Query 015759
Match_columns 401
No_of_seqs 225 out of 2624
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:18:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1E-73 2.3E-78 488.4 32.6 375 2-382 91-465 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 4.4E-63 9.6E-68 450.3 34.1 344 2-346 121-470 (519)
3 KOG0340 ATP-dependent RNA heli 100.0 1.1E-63 2.3E-68 422.1 25.7 367 2-374 37-411 (442)
4 COG0513 SrmB Superfamily II DN 100.0 1.8E-60 3.8E-65 451.9 36.5 334 2-341 59-398 (513)
5 PRK04837 ATP-dependent RNA hel 100.0 5.2E-60 1.1E-64 444.4 38.1 350 2-352 38-390 (423)
6 KOG0338 ATP-dependent RNA heli 100.0 6.8E-61 1.5E-65 422.6 29.1 344 2-348 211-560 (691)
7 KOG0328 Predicted ATP-dependen 100.0 1.9E-61 4.1E-66 396.4 23.6 339 3-348 58-397 (400)
8 PRK10590 ATP-dependent RNA hel 100.0 2.1E-59 4.5E-64 442.8 36.4 344 2-346 31-374 (456)
9 KOG0342 ATP-dependent RNA heli 100.0 7.7E-59 1.7E-63 408.7 32.5 352 2-355 112-468 (543)
10 PRK11634 ATP-dependent RNA hel 100.0 7.2E-58 1.6E-62 441.8 40.2 340 2-348 36-376 (629)
11 PRK04537 ATP-dependent RNA hel 100.0 3.7E-58 8E-63 441.6 37.5 346 2-347 39-387 (572)
12 PRK11776 ATP-dependent RNA hel 100.0 5.5E-58 1.2E-62 435.2 37.7 337 2-346 34-371 (460)
13 KOG0333 U5 snRNP-like RNA heli 100.0 1E-58 2.2E-63 410.2 29.1 337 1-338 274-638 (673)
14 PTZ00110 helicase; Provisional 100.0 9.4E-58 2E-62 437.5 37.6 342 2-345 160-505 (545)
15 KOG0326 ATP-dependent RNA heli 100.0 9.7E-60 2.1E-64 392.8 20.3 337 2-346 115-451 (459)
16 PRK11192 ATP-dependent RNA hel 100.0 3.8E-57 8.3E-62 427.0 37.9 339 2-343 31-371 (434)
17 KOG0343 RNA Helicase [RNA proc 100.0 2.2E-57 4.7E-62 404.0 30.8 347 2-352 99-450 (758)
18 KOG0345 ATP-dependent RNA heli 100.0 4.5E-57 9.7E-62 395.1 29.0 331 3-334 37-374 (567)
19 PLN00206 DEAD-box ATP-dependen 100.0 3.1E-56 6.8E-61 426.0 36.8 342 2-345 151-496 (518)
20 PRK01297 ATP-dependent RNA hel 100.0 1.7E-55 3.6E-60 419.2 40.4 349 2-352 117-469 (475)
21 KOG0335 ATP-dependent RNA heli 100.0 9.1E-56 2E-60 395.6 29.7 343 2-345 104-465 (482)
22 KOG0348 ATP-dependent RNA heli 100.0 4.6E-56 1E-60 394.2 26.4 333 3-335 168-565 (708)
23 KOG0346 RNA helicase [RNA proc 100.0 4.2E-55 9E-60 379.6 30.2 359 2-360 49-454 (569)
24 PTZ00424 helicase 45; Provisio 100.0 5.8E-54 1.3E-58 402.7 36.8 339 2-347 58-397 (401)
25 KOG0339 ATP-dependent RNA heli 100.0 6.4E-53 1.4E-57 371.9 32.6 348 1-350 252-601 (731)
26 KOG0336 ATP-dependent RNA heli 100.0 6.6E-54 1.4E-58 369.1 25.2 340 4-345 252-593 (629)
27 KOG0332 ATP-dependent RNA heli 100.0 1.2E-52 2.6E-57 357.3 24.5 334 3-345 121-465 (477)
28 KOG0347 RNA helicase [RNA proc 100.0 3E-53 6.6E-58 377.4 20.5 370 1-371 210-619 (731)
29 KOG0341 DEAD-box protein abstr 100.0 2.2E-53 4.7E-58 363.6 15.1 340 3-344 201-549 (610)
30 KOG0350 DEAD-box ATP-dependent 100.0 1.9E-51 4E-56 362.3 26.1 327 7-338 181-554 (620)
31 TIGR03817 DECH_helic helicase/ 100.0 5.9E-50 1.3E-54 394.2 34.0 344 2-360 44-424 (742)
32 KOG0334 RNA helicase [RNA proc 100.0 3.9E-50 8.5E-55 384.0 29.2 342 2-344 395-740 (997)
33 KOG0327 Translation initiation 100.0 1.5E-49 3.3E-54 340.9 24.5 338 3-349 57-395 (397)
34 KOG0337 ATP-dependent RNA heli 100.0 3.9E-49 8.4E-54 340.8 20.1 333 3-341 52-385 (529)
35 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-47 3E-52 363.3 31.0 311 2-334 19-343 (470)
36 PLN03137 ATP-dependent DNA hel 100.0 3.9E-47 8.5E-52 372.4 32.4 311 2-334 468-797 (1195)
37 KOG4284 DEAD box protein [Tran 100.0 3.8E-48 8.1E-53 350.7 22.1 316 3-326 56-381 (980)
38 PRK11057 ATP-dependent DNA hel 100.0 8E-46 1.7E-50 360.1 32.0 308 2-332 33-351 (607)
39 TIGR01389 recQ ATP-dependent D 100.0 2.5E-45 5.3E-50 357.9 31.1 308 2-332 21-339 (591)
40 KOG0344 ATP-dependent RNA heli 100.0 2E-45 4.3E-50 331.5 23.3 341 2-343 166-514 (593)
41 PRK13767 ATP-dependent helicas 100.0 4.6E-44 9.9E-49 359.4 34.2 318 2-321 40-395 (876)
42 TIGR00580 mfd transcription-re 100.0 2.9E-43 6.2E-48 349.9 32.6 291 9-324 472-770 (926)
43 PRK09751 putative ATP-dependen 100.0 2.7E-42 5.8E-47 351.9 37.0 327 14-345 1-408 (1490)
44 PRK10689 transcription-repair 100.0 3.6E-42 7.8E-47 349.2 32.0 290 10-324 622-919 (1147)
45 COG0514 RecQ Superfamily II DN 100.0 8.1E-43 1.8E-47 323.9 24.3 312 2-336 25-349 (590)
46 PRK02362 ski2-like helicase; P 100.0 3.3E-42 7.2E-47 343.1 30.2 303 6-324 36-397 (737)
47 COG1201 Lhr Lhr-like helicases 100.0 1.6E-41 3.5E-46 326.5 31.4 314 2-323 30-361 (814)
48 PRK10917 ATP-dependent DNA hel 100.0 3.3E-41 7.2E-46 331.1 34.0 289 10-322 283-587 (681)
49 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.3E-41 2.8E-46 329.0 29.3 308 2-323 23-390 (844)
50 PRK00254 ski2-like helicase; P 100.0 1.3E-40 2.9E-45 330.7 32.4 301 5-325 35-389 (720)
51 COG1111 MPH1 ERCC4-like helica 100.0 4E-40 8.6E-45 292.9 31.8 308 9-327 29-484 (542)
52 TIGR00643 recG ATP-dependent D 100.0 3.4E-40 7.3E-45 322.1 32.6 290 10-322 257-564 (630)
53 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.4E-40 9.6E-45 324.0 32.4 300 2-326 10-338 (819)
54 PHA02653 RNA helicase NPH-II; 100.0 9.6E-40 2.1E-44 314.3 32.4 312 2-333 172-523 (675)
55 PRK11664 ATP-dependent RNA hel 100.0 4.3E-40 9.3E-45 324.9 28.6 299 2-325 13-340 (812)
56 PRK09401 reverse gyrase; Revie 100.0 1.1E-39 2.4E-44 331.8 31.8 271 3-296 89-410 (1176)
57 PRK01172 ski2-like helicase; P 100.0 1.6E-39 3.5E-44 321.8 27.8 301 3-324 31-378 (674)
58 TIGR01587 cas3_core CRISPR-ass 100.0 8E-39 1.7E-43 295.4 26.0 299 11-324 1-336 (358)
59 PHA02558 uvsW UvsW helicase; P 100.0 1.7E-38 3.6E-43 302.8 25.2 289 3-315 123-443 (501)
60 KOG0329 ATP-dependent RNA heli 100.0 4.2E-40 9.1E-45 267.2 11.0 302 3-346 73-378 (387)
61 COG1204 Superfamily II helicas 100.0 9.1E-38 2E-42 304.7 25.8 304 4-321 42-405 (766)
62 TIGR03714 secA2 accessory Sec 100.0 5.3E-36 1.1E-40 287.3 34.4 305 8-326 82-539 (762)
63 PRK12898 secA preprotein trans 100.0 5.8E-37 1.3E-41 290.6 27.2 307 3-326 112-588 (656)
64 TIGR01054 rgy reverse gyrase. 100.0 2E-36 4.4E-41 308.5 31.8 270 3-295 87-408 (1171)
65 PRK14701 reverse gyrase; Provi 100.0 4.8E-37 1E-41 318.9 27.0 305 2-327 87-459 (1638)
66 PRK09200 preprotein translocas 100.0 1.3E-35 2.9E-40 287.2 33.8 305 5-326 89-543 (790)
67 PRK13766 Hef nuclease; Provisi 100.0 1.4E-35 3.1E-40 299.1 35.0 306 10-326 30-481 (773)
68 TIGR00963 secA preprotein tran 100.0 2.6E-35 5.7E-40 280.7 31.1 305 5-326 67-519 (745)
69 COG1202 Superfamily II helicas 100.0 2.3E-36 4.9E-41 271.5 20.6 303 6-324 229-553 (830)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 3.4E-35 7.4E-40 268.2 28.8 285 3-309 6-357 (357)
71 COG1205 Distinct helicase fami 100.0 2.1E-35 4.5E-40 292.2 27.4 324 4-337 80-437 (851)
72 KOG0354 DEAD-box like helicase 100.0 6.8E-35 1.5E-39 274.4 25.3 308 4-324 73-529 (746)
73 COG1200 RecG RecG-like helicas 100.0 1.9E-34 4.2E-39 267.5 27.3 321 10-372 284-621 (677)
74 TIGR00603 rad25 DNA repair hel 100.0 1E-34 2.2E-39 278.5 24.7 293 10-330 274-613 (732)
75 KOG0952 DNA/RNA helicase MER3/ 100.0 4E-34 8.6E-39 272.7 26.9 323 5-331 122-498 (1230)
76 PRK11131 ATP-dependent RNA hel 100.0 5.1E-34 1.1E-38 286.7 26.4 295 2-326 82-413 (1294)
77 KOG0351 ATP-dependent DNA heli 100.0 2E-34 4.4E-39 283.2 20.7 309 4-334 274-602 (941)
78 KOG0349 Putative DEAD-box RNA 100.0 5E-34 1.1E-38 248.3 19.7 287 46-333 286-624 (725)
79 KOG0352 ATP-dependent DNA heli 100.0 2.7E-34 5.9E-39 249.5 16.7 307 6-333 33-371 (641)
80 PRK04914 ATP-dependent helicas 100.0 7.6E-33 1.6E-37 274.6 29.2 321 9-340 169-619 (956)
81 COG1197 Mfd Transcription-repa 100.0 6.5E-33 1.4E-37 271.2 27.3 327 10-374 616-950 (1139)
82 TIGR00595 priA primosomal prot 100.0 1.1E-30 2.4E-35 247.1 30.6 286 13-321 1-378 (505)
83 PRK05580 primosome assembly pr 100.0 3.2E-30 6.9E-35 252.6 32.9 293 9-324 162-549 (679)
84 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6.5E-31 1.4E-35 265.4 28.0 299 2-326 75-406 (1283)
85 PRK13104 secA preprotein trans 100.0 9.2E-30 2E-34 246.3 33.1 303 9-326 95-589 (896)
86 COG1061 SSL2 DNA or RNA helica 100.0 5.1E-31 1.1E-35 246.5 23.2 276 9-311 55-376 (442)
87 KOG0951 RNA helicase BRR2, DEA 100.0 9.5E-31 2.1E-35 253.0 25.5 316 6-326 322-704 (1674)
88 PRK09694 helicase Cas3; Provis 100.0 9.3E-30 2E-34 251.1 27.8 295 8-313 300-664 (878)
89 KOG0353 ATP-dependent DNA heli 100.0 1.8E-30 4E-35 222.8 16.8 307 4-327 104-470 (695)
90 PRK12906 secA preprotein trans 100.0 1.5E-28 3.3E-33 236.7 29.7 300 12-326 96-555 (796)
91 PRK12904 preprotein translocas 100.0 1.3E-28 2.8E-33 238.1 29.1 301 11-326 96-575 (830)
92 COG4098 comFA Superfamily II D 100.0 2.4E-27 5.2E-32 201.2 27.8 295 3-327 110-419 (441)
93 PLN03142 Probable chromatin-re 100.0 1.9E-27 4.2E-32 237.0 27.5 303 7-324 186-599 (1033)
94 PRK13107 preprotein translocas 100.0 7.2E-27 1.6E-31 225.6 30.1 303 9-326 95-593 (908)
95 PRK11448 hsdR type I restricti 100.0 4.9E-27 1.1E-31 238.5 27.8 292 9-313 433-802 (1123)
96 KOG0947 Cytoplasmic exosomal R 100.0 1.1E-27 2.5E-32 226.6 20.8 301 3-324 306-723 (1248)
97 PRK12899 secA preprotein trans 100.0 4.5E-26 9.8E-31 220.5 32.0 121 2-134 100-228 (970)
98 KOG0948 Nuclear exosomal RNA h 100.0 1.3E-27 2.9E-32 220.9 16.2 295 6-323 141-538 (1041)
99 cd00268 DEADc DEAD-box helicas 100.0 1.8E-26 3.8E-31 196.0 20.1 173 3-180 30-202 (203)
100 COG4581 Superfamily II RNA hel 99.9 1.8E-26 3.9E-31 226.1 22.8 300 5-323 130-536 (1041)
101 KOG0385 Chromatin remodeling c 99.9 2.3E-25 5E-30 206.9 26.5 304 5-326 182-601 (971)
102 COG1643 HrpA HrpA-like helicas 99.9 3.4E-25 7.3E-30 215.8 26.6 301 2-325 58-388 (845)
103 COG1203 CRISPR-associated heli 99.9 1E-25 2.2E-30 223.1 20.8 306 11-324 216-550 (733)
104 KOG0950 DNA polymerase theta/e 99.9 1.8E-25 3.9E-30 212.9 21.3 313 2-331 233-618 (1008)
105 KOG0922 DEAH-box RNA helicase 99.9 4.7E-25 1E-29 203.3 22.1 299 2-326 59-392 (674)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 1.3E-25 2.8E-30 185.1 15.8 158 3-168 8-168 (169)
107 COG1110 Reverse gyrase [DNA re 99.9 2E-24 4.3E-29 207.0 25.2 265 6-295 94-416 (1187)
108 COG1198 PriA Primosomal protei 99.9 6.4E-23 1.4E-27 197.1 24.2 295 9-325 217-604 (730)
109 TIGR01407 dinG_rel DnaQ family 99.9 5E-22 1.1E-26 200.9 31.9 119 216-337 673-829 (850)
110 KOG0384 Chromodomain-helicase 99.9 1.1E-23 2.4E-28 204.7 17.5 305 5-325 385-812 (1373)
111 TIGR00348 hsdR type I site-spe 99.9 4.6E-22 1E-26 195.2 28.2 284 9-311 263-634 (667)
112 PRK12900 secA preprotein trans 99.9 4.1E-22 8.8E-27 193.8 27.0 124 202-327 581-714 (1025)
113 KOG0387 Transcription-coupled 99.9 1E-21 2.2E-26 183.6 26.3 304 6-327 221-661 (923)
114 TIGR00631 uvrb excinuclease AB 99.9 1.4E-21 3.1E-26 189.5 25.9 131 203-334 426-563 (655)
115 PRK12326 preprotein translocas 99.9 7.7E-21 1.7E-25 180.0 29.6 300 12-326 94-549 (764)
116 KOG0923 mRNA splicing factor A 99.9 4.3E-22 9.3E-27 182.5 19.9 297 2-323 273-605 (902)
117 PRK07246 bifunctional ATP-depe 99.9 1.6E-20 3.6E-25 187.4 31.5 329 4-352 259-813 (820)
118 COG0556 UvrB Helicase subunit 99.9 7.3E-21 1.6E-25 171.0 24.5 166 153-326 387-559 (663)
119 COG4096 HsdR Type I site-speci 99.9 3.9E-22 8.4E-27 188.5 17.0 285 3-311 178-525 (875)
120 KOG0920 ATP-dependent RNA heli 99.9 1.8E-21 4E-26 189.2 21.9 305 2-324 181-544 (924)
121 KOG0390 DNA repair protein, SN 99.9 1.3E-20 2.9E-25 180.2 27.3 309 8-325 262-708 (776)
122 PRK13103 secA preprotein trans 99.9 2.5E-20 5.5E-25 180.8 29.0 303 9-326 95-593 (913)
123 KOG0392 SNF2 family DNA-depend 99.9 4.2E-21 9.2E-26 186.5 20.4 306 11-325 996-1455(1549)
124 KOG0924 mRNA splicing factor A 99.9 7.4E-21 1.6E-25 175.0 18.1 296 3-324 365-697 (1042)
125 KOG0949 Predicted helicase, DE 99.9 4.7E-20 1E-24 175.8 23.7 149 5-164 522-673 (1330)
126 KOG0926 DEAH-box RNA helicase 99.9 2.4E-21 5.2E-26 181.0 14.4 304 2-323 264-703 (1172)
127 KOG0953 Mitochondrial RNA heli 99.9 1.3E-20 2.8E-25 169.9 18.5 282 8-340 190-489 (700)
128 KOG0389 SNF2 family DNA-depend 99.9 3.5E-20 7.6E-25 173.3 20.9 307 8-327 417-891 (941)
129 PRK08074 bifunctional ATP-depe 99.9 4.5E-19 9.7E-24 180.3 30.1 121 216-336 751-907 (928)
130 CHL00122 secA preprotein trans 99.8 1E-18 2.2E-23 169.0 28.3 264 4-283 84-490 (870)
131 PRK12903 secA preprotein trans 99.8 1E-18 2.2E-23 168.1 27.7 301 10-326 92-541 (925)
132 KOG1123 RNA polymerase II tran 99.8 3.5E-20 7.5E-25 165.1 15.6 297 10-333 321-662 (776)
133 KOG4150 Predicted ATP-dependen 99.8 7.3E-20 1.6E-24 165.5 14.0 356 3-368 295-686 (1034)
134 TIGR03117 cas_csf4 CRISPR-asso 99.8 1.2E-17 2.6E-22 159.8 28.3 107 216-324 469-616 (636)
135 KOG1000 Chromatin remodeling p 99.8 3.5E-19 7.6E-24 158.6 16.0 297 5-320 210-597 (689)
136 PRK12902 secA preprotein trans 99.8 3.2E-17 6.8E-22 158.5 29.7 114 9-133 98-217 (939)
137 smart00487 DEXDc DEAD-like hel 99.8 2.4E-18 5.3E-23 145.5 18.6 173 3-183 17-191 (201)
138 cd00079 HELICc Helicase superf 99.8 8.9E-19 1.9E-23 137.7 13.6 118 203-320 12-131 (131)
139 cd00046 DEXDc DEAD-like helica 99.8 3.2E-18 6.9E-23 136.5 17.0 144 10-162 1-144 (144)
140 PRK05298 excinuclease ABC subu 99.8 3.1E-18 6.6E-23 167.8 18.9 142 205-347 432-589 (652)
141 PF00271 Helicase_C: Helicase 99.8 5.6E-19 1.2E-23 125.0 7.9 78 235-312 1-78 (78)
142 KOG0925 mRNA splicing factor A 99.8 2.3E-17 5.1E-22 146.8 19.4 287 3-324 56-387 (699)
143 COG4889 Predicted helicase [Ge 99.8 4.4E-19 9.6E-24 167.5 8.8 293 14-319 185-583 (1518)
144 KOG0388 SNF2 family DNA-depend 99.7 7E-16 1.5E-20 143.1 21.4 124 202-325 1027-1155(1185)
145 COG1199 DinG Rad3-related DNA 99.7 2.2E-15 4.7E-20 150.0 25.9 121 216-339 478-634 (654)
146 KOG0386 Chromatin remodeling c 99.7 5.2E-17 1.1E-21 155.9 13.0 296 6-320 410-832 (1157)
147 PRK11747 dinG ATP-dependent DN 99.7 2E-14 4.3E-19 142.2 30.1 105 216-324 533-674 (697)
148 PRK14873 primosome assembly pr 99.7 7.3E-15 1.6E-19 142.7 25.9 137 13-169 164-310 (665)
149 PRK12901 secA preprotein trans 99.7 1.2E-14 2.6E-19 142.4 25.3 110 215-326 626-743 (1112)
150 KOG0391 SNF2 family DNA-depend 99.7 7E-15 1.5E-19 142.9 22.6 123 202-324 1259-1387(1958)
151 KOG4439 RNA polymerase II tran 99.7 2.4E-15 5.3E-20 139.6 18.6 104 215-318 744-850 (901)
152 PF02399 Herpes_ori_bp: Origin 99.7 1.4E-14 3E-19 139.0 23.7 288 10-323 50-387 (824)
153 smart00490 HELICc helicase sup 99.7 4.6E-16 1E-20 111.3 8.4 81 232-312 2-82 (82)
154 PF04851 ResIII: Type III rest 99.6 1.1E-15 2.4E-20 127.5 11.3 137 9-163 25-183 (184)
155 KOG1015 Transcription regulato 99.6 1.9E-14 4.1E-19 137.5 20.3 120 204-323 1127-1276(1567)
156 KOG1002 Nucleotide excision re 99.6 4.3E-14 9.3E-19 126.5 21.0 110 216-325 637-750 (791)
157 TIGR00604 rad3 DNA repair heli 99.6 1E-13 2.3E-18 138.2 25.7 109 216-324 521-674 (705)
158 TIGR02562 cas3_yersinia CRISPR 99.6 1E-14 2.2E-19 143.6 17.7 291 12-313 434-881 (1110)
159 KOG0951 RNA helicase BRR2, DEA 99.6 1.4E-13 3.1E-18 135.3 23.2 297 6-331 1156-1501(1674)
160 PF06862 DUF1253: Protein of u 99.6 3.7E-12 7.9E-17 116.5 28.7 289 43-331 34-422 (442)
161 COG0610 Type I site-specific r 99.6 1.1E-12 2.4E-17 133.2 27.4 298 8-322 272-651 (962)
162 PF07652 Flavi_DEAD: Flaviviru 99.5 4.1E-14 9E-19 107.8 8.2 137 7-167 2-141 (148)
163 COG0653 SecA Preprotein transl 99.5 4.4E-12 9.5E-17 122.9 20.2 306 5-325 89-546 (822)
164 COG0553 HepA Superfamily II DN 99.5 5.2E-12 1.1E-16 130.8 21.5 123 203-325 692-823 (866)
165 PF00176 SNF2_N: SNF2 family N 99.4 3.3E-12 7.2E-17 115.3 11.4 149 7-163 23-173 (299)
166 smart00489 DEXDc3 DEAD-like he 99.2 6.1E-11 1.3E-15 105.2 10.3 64 3-69 21-84 (289)
167 smart00488 DEXDc2 DEAD-like he 99.2 6.1E-11 1.3E-15 105.2 10.3 64 3-69 21-84 (289)
168 KOG1016 Predicted DNA helicase 99.2 1.9E-09 4.2E-14 102.0 18.0 105 217-321 719-844 (1387)
169 KOG2340 Uncharacterized conser 99.1 4.2E-09 9E-14 95.9 14.3 306 23-328 248-672 (698)
170 KOG0921 Dosage compensation co 98.9 2.2E-08 4.7E-13 96.6 12.1 305 2-322 386-772 (1282)
171 COG3587 Restriction endonuclea 98.8 4.3E-07 9.4E-12 87.7 18.7 69 268-336 484-565 (985)
172 PF07517 SecA_DEAD: SecA DEAD- 98.8 5.5E-08 1.2E-12 84.1 11.1 113 11-134 92-210 (266)
173 PRK15483 type III restriction- 98.8 8E-08 1.7E-12 95.9 13.3 146 8-164 58-240 (986)
174 KOG1001 Helicase-like transcri 98.8 3.6E-08 7.8E-13 96.0 10.6 100 218-317 540-641 (674)
175 KOG0952 DNA/RNA helicase MER3/ 98.7 3.3E-09 7.2E-14 103.8 1.3 128 8-146 942-1070(1230)
176 PF13307 Helicase_C_2: Helicas 98.7 9.7E-08 2.1E-12 77.7 8.2 108 215-324 7-150 (167)
177 PF13872 AAA_34: P-loop contai 98.5 5.5E-07 1.2E-11 78.1 9.8 147 9-169 62-227 (303)
178 TIGR00596 rad1 DNA repair prot 98.5 7.3E-06 1.6E-10 82.0 18.9 66 96-162 7-72 (814)
179 PF13086 AAA_11: AAA domain; P 98.3 2.3E-06 5.1E-11 74.1 8.3 63 5-68 12-75 (236)
180 PF09848 DUF2075: Uncharacteri 98.3 2.5E-06 5.5E-11 78.5 8.7 109 10-148 2-117 (352)
181 PF13245 AAA_19: Part of AAA d 98.2 3E-06 6.5E-11 58.6 5.8 53 9-66 9-62 (76)
182 KOG1132 Helicase of the DEAD s 98.2 5.7E-06 1.2E-10 80.5 8.8 71 2-72 33-136 (945)
183 PF02562 PhoH: PhoH-like prote 98.1 1.3E-06 2.8E-11 72.6 2.7 135 3-160 13-154 (205)
184 PF13604 AAA_30: AAA domain; P 98.1 2.1E-05 4.7E-10 65.8 8.9 46 11-65 20-65 (196)
185 KOG1802 RNA helicase nonsense 98.1 1.6E-05 3.4E-10 75.1 8.4 66 5-82 421-486 (935)
186 PRK10536 hypothetical protein; 98.0 8.2E-06 1.8E-10 69.7 5.6 133 3-157 68-208 (262)
187 KOG1803 DNA helicase [Replicat 98.0 1.9E-05 4E-10 74.1 8.2 49 10-67 202-250 (649)
188 PF12340 DUF3638: Protein of u 98.0 2.4E-05 5.1E-10 65.6 7.6 120 7-135 39-186 (229)
189 smart00492 HELICc3 helicase su 98.0 6.6E-05 1.4E-09 58.9 9.5 94 230-323 4-137 (141)
190 PRK04296 thymidine kinase; Pro 98.0 3.9E-05 8.5E-10 63.9 8.5 37 9-54 2-38 (190)
191 smart00491 HELICc2 helicase su 97.9 5.6E-05 1.2E-09 59.4 8.4 95 229-323 3-138 (142)
192 COG3421 Uncharacterized protei 97.9 0.00015 3.3E-09 68.0 11.7 142 14-164 2-167 (812)
193 PRK12723 flagellar biosynthesi 97.9 0.0003 6.5E-09 64.8 13.6 131 8-172 173-308 (388)
194 PF13401 AAA_22: AAA domain; P 97.9 9E-05 1.9E-09 57.7 8.7 37 123-162 89-125 (131)
195 TIGR01447 recD exodeoxyribonuc 97.9 0.00012 2.6E-09 71.4 11.1 135 5-161 156-295 (586)
196 PRK14722 flhF flagellar biosyn 97.9 0.00018 3.8E-09 65.7 11.2 134 6-173 134-269 (374)
197 PRK06526 transposase; Provisio 97.8 0.0001 2.3E-09 64.1 8.6 25 4-28 93-117 (254)
198 TIGR00376 DNA helicase, putati 97.8 0.00015 3.3E-09 71.6 10.6 53 8-69 172-224 (637)
199 KOG0298 DEAD box-containing he 97.8 9.3E-05 2E-09 75.0 8.6 161 6-171 371-559 (1394)
200 PRK11889 flhF flagellar biosyn 97.8 0.00056 1.2E-08 62.3 12.4 130 8-173 240-374 (436)
201 COG1419 FlhF Flagellar GTP-bin 97.7 0.00034 7.4E-09 63.5 11.0 132 8-173 202-335 (407)
202 PRK10875 recD exonuclease V su 97.7 0.00021 4.5E-09 69.9 10.4 133 6-161 164-301 (615)
203 PRK08181 transposase; Validate 97.7 0.00026 5.7E-09 62.0 9.3 110 6-166 103-213 (269)
204 PF13871 Helicase_C_4: Helicas 97.7 0.00011 2.4E-09 63.7 6.7 79 258-336 52-142 (278)
205 PF00448 SRP54: SRP54-type pro 97.7 0.00029 6.2E-09 58.8 8.7 124 11-168 3-131 (196)
206 KOG1131 RNA polymerase II tran 97.6 0.00037 8E-09 64.4 9.4 59 5-68 31-89 (755)
207 PRK14974 cell division protein 97.6 0.0016 3.6E-08 58.8 13.3 131 9-173 140-275 (336)
208 TIGR01448 recD_rel helicase, p 97.5 0.00044 9.5E-09 69.5 9.7 114 6-161 335-452 (720)
209 PRK05703 flhF flagellar biosyn 97.5 0.0021 4.6E-08 60.4 13.7 133 7-173 219-354 (424)
210 cd00009 AAA The AAA+ (ATPases 97.5 0.00074 1.6E-08 53.4 8.6 17 9-25 19-35 (151)
211 KOG0989 Replication factor C, 97.5 0.00048 1E-08 59.7 7.4 45 117-162 125-169 (346)
212 smart00382 AAA ATPases associa 97.4 0.0005 1.1E-08 54.0 7.3 41 9-58 2-42 (148)
213 PF00308 Bac_DnaA: Bacterial d 97.4 0.001 2.2E-08 56.7 8.8 107 11-166 36-144 (219)
214 cd01124 KaiC KaiC is a circadi 97.4 0.0028 6E-08 52.7 10.9 50 11-70 1-50 (187)
215 PRK05642 DNA replication initi 97.3 0.0022 4.8E-08 55.3 9.5 44 121-164 97-141 (234)
216 cd01120 RecA-like_NTPases RecA 97.3 0.0069 1.5E-07 48.8 12.0 38 12-58 2-39 (165)
217 PRK09183 transposase/IS protei 97.3 0.0041 9E-08 54.5 11.2 24 5-28 98-121 (259)
218 PRK12377 putative replication 97.2 0.0026 5.6E-08 55.0 9.3 47 9-65 101-147 (248)
219 PRK06731 flhF flagellar biosyn 97.2 0.011 2.5E-07 51.7 13.3 130 8-173 74-208 (270)
220 PRK08084 DNA replication initi 97.2 0.0021 4.6E-08 55.5 8.7 19 8-26 44-62 (235)
221 COG1875 NYN ribonuclease and A 97.2 0.0015 3.2E-08 58.2 7.6 43 12-60 248-290 (436)
222 PRK08727 hypothetical protein; 97.2 0.0026 5.6E-08 54.9 9.1 46 121-166 93-140 (233)
223 COG2256 MGS1 ATPase related to 97.2 0.002 4.3E-08 58.2 8.2 47 10-68 49-95 (436)
224 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.0026 5.6E-08 54.7 8.9 19 8-26 37-55 (226)
225 PRK00149 dnaA chromosomal repl 97.2 0.006 1.3E-07 58.3 12.1 49 10-66 149-197 (450)
226 PF05127 Helicase_RecD: Helica 97.2 0.00015 3.4E-09 58.6 1.1 124 13-163 1-124 (177)
227 COG1435 Tdk Thymidine kinase [ 97.1 0.0087 1.9E-07 48.7 11.0 107 9-150 4-110 (201)
228 PF00580 UvrD-helicase: UvrD/R 97.1 0.00091 2E-08 60.7 6.0 113 8-131 12-125 (315)
229 PRK06893 DNA replication initi 97.1 0.003 6.5E-08 54.4 8.8 45 120-164 90-136 (229)
230 PRK06921 hypothetical protein; 97.1 0.0023 5E-08 56.2 8.1 46 8-62 116-161 (266)
231 PRK14087 dnaA chromosomal repl 97.1 0.0059 1.3E-07 58.0 11.3 110 10-166 142-253 (450)
232 PRK08116 hypothetical protein; 97.1 0.0048 1E-07 54.3 10.0 47 9-65 114-160 (268)
233 PRK07952 DNA replication prote 97.1 0.0092 2E-07 51.5 11.3 109 10-167 100-210 (244)
234 COG1484 DnaC DNA replication p 97.0 0.004 8.8E-08 54.3 8.8 52 7-68 103-154 (254)
235 TIGR00362 DnaA chromosomal rep 97.0 0.0074 1.6E-07 56.9 11.3 45 10-62 137-181 (405)
236 PRK14088 dnaA chromosomal repl 97.0 0.01 2.2E-07 56.3 12.1 48 10-65 131-178 (440)
237 PF00004 AAA: ATPase family as 97.0 0.011 2.4E-07 45.7 10.5 14 12-25 1-14 (132)
238 KOG0383 Predicted helicase [Ge 97.0 2.3E-05 5E-10 76.0 -5.7 64 216-280 630-696 (696)
239 PRK14723 flhF flagellar biosyn 97.0 0.0074 1.6E-07 60.1 11.1 132 8-173 184-317 (767)
240 PRK14956 DNA polymerase III su 97.0 0.0022 4.7E-08 60.4 7.0 19 10-28 41-59 (484)
241 PRK08533 flagellar accessory p 97.0 0.013 2.8E-07 50.4 11.2 55 6-70 21-75 (230)
242 PRK12726 flagellar biosynthesi 96.9 0.014 3E-07 53.3 11.1 122 6-163 203-328 (407)
243 PTZ00293 thymidine kinase; Pro 96.9 0.0096 2.1E-07 49.8 9.4 40 8-56 3-42 (211)
244 PRK00771 signal recognition pa 96.9 0.02 4.3E-07 53.9 12.6 51 122-172 176-227 (437)
245 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0075 1.6E-07 61.1 10.5 46 9-63 368-413 (744)
246 PRK12727 flagellar biosynthesi 96.8 0.021 4.5E-07 54.5 12.3 24 5-28 346-369 (559)
247 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0094 2E-07 51.6 9.5 54 7-70 19-72 (237)
248 PRK14721 flhF flagellar biosyn 96.8 0.024 5.3E-07 52.9 12.6 133 6-172 188-322 (420)
249 PRK14086 dnaA chromosomal repl 96.8 0.009 1.9E-07 58.1 10.0 108 11-167 316-425 (617)
250 TIGR01547 phage_term_2 phage t 96.8 0.0061 1.3E-07 57.3 8.8 145 12-173 4-151 (396)
251 cd01122 GP4d_helicase GP4d_hel 96.8 0.018 3.9E-07 51.0 11.4 55 6-69 27-81 (271)
252 PRK12422 chromosomal replicati 96.8 0.013 2.8E-07 55.5 10.9 109 10-169 142-252 (445)
253 PRK08903 DnaA regulatory inact 96.8 0.01 2.2E-07 51.1 9.3 19 8-26 41-59 (227)
254 PF06745 KaiC: KaiC; InterPro 96.8 0.0034 7.3E-08 54.0 6.3 136 6-162 16-160 (226)
255 KOG1805 DNA replication helica 96.8 0.0041 8.9E-08 62.0 7.3 112 6-135 682-810 (1100)
256 PF13173 AAA_14: AAA domain 96.8 0.02 4.3E-07 44.2 10.0 40 121-164 61-100 (128)
257 PF05496 RuvB_N: Holliday junc 96.8 0.0032 6.8E-08 52.8 5.6 17 10-26 51-67 (233)
258 PRK13889 conjugal transfer rel 96.7 0.0082 1.8E-07 61.9 9.7 50 5-63 357-407 (988)
259 PF14617 CMS1: U3-containing 9 96.7 0.0039 8.5E-08 53.6 6.3 85 45-131 125-211 (252)
260 PRK11823 DNA repair protein Ra 96.7 0.013 2.8E-07 55.7 10.2 54 7-70 78-131 (446)
261 PHA02544 44 clamp loader, smal 96.7 0.01 2.3E-07 53.9 9.4 40 121-161 100-139 (316)
262 cd01121 Sms Sms (bacterial rad 96.7 0.018 3.8E-07 53.2 10.5 55 6-70 79-133 (372)
263 PRK06835 DNA replication prote 96.7 0.012 2.7E-07 53.2 9.3 47 8-64 182-228 (329)
264 TIGR02881 spore_V_K stage V sp 96.7 0.022 4.9E-07 50.1 10.7 19 8-26 41-59 (261)
265 PRK11331 5-methylcytosine-spec 96.6 0.0046 1E-07 57.6 6.3 24 3-26 188-211 (459)
266 PRK13342 recombination factor 96.6 0.02 4.4E-07 54.0 10.8 17 10-26 37-53 (413)
267 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.026 5.7E-07 48.6 10.7 55 6-70 17-71 (229)
268 COG3973 Superfamily I DNA and 96.6 0.0073 1.6E-07 57.3 7.4 61 8-71 225-285 (747)
269 PRK00411 cdc6 cell division co 96.6 0.016 3.4E-07 54.5 9.9 17 9-25 55-71 (394)
270 PLN03025 replication factor C 96.6 0.026 5.6E-07 51.3 10.9 41 120-162 98-138 (319)
271 KOG0991 Replication factor C, 96.6 0.0063 1.4E-07 50.8 6.1 35 118-153 110-144 (333)
272 PRK07003 DNA polymerase III su 96.6 0.0073 1.6E-07 59.7 7.5 43 120-164 118-160 (830)
273 PHA03333 putative ATPase subun 96.5 0.03 6.6E-07 54.6 11.0 55 9-71 187-241 (752)
274 CHL00181 cbbX CbbX; Provisiona 96.5 0.035 7.7E-07 49.4 10.9 21 8-28 58-78 (287)
275 PRK14964 DNA polymerase III su 96.5 0.013 2.9E-07 55.7 8.6 19 10-28 36-54 (491)
276 PRK12724 flagellar biosynthesi 96.5 0.056 1.2E-06 50.2 12.3 53 120-172 298-355 (432)
277 PHA03368 DNA packaging termina 96.5 0.02 4.3E-07 55.6 9.5 135 9-164 254-392 (738)
278 PRK07764 DNA polymerase III su 96.5 0.011 2.5E-07 60.0 8.3 43 120-164 119-161 (824)
279 TIGR01425 SRP54_euk signal rec 96.5 0.068 1.5E-06 50.0 12.8 133 10-173 101-235 (429)
280 COG0593 DnaA ATPase involved i 96.4 0.018 4E-07 53.1 8.9 48 121-168 175-224 (408)
281 PRK08939 primosomal protein Dn 96.4 0.028 6.1E-07 50.4 10.0 110 8-168 155-267 (306)
282 PRK06995 flhF flagellar biosyn 96.4 0.017 3.7E-07 54.8 8.7 22 7-28 254-275 (484)
283 PRK13826 Dtr system oriT relax 96.4 0.029 6.2E-07 58.5 11.0 47 8-63 396-442 (1102)
284 PRK14958 DNA polymerase III su 96.4 0.018 3.8E-07 55.6 8.9 39 120-159 118-156 (509)
285 PRK10919 ATP-dependent DNA hel 96.4 0.0082 1.8E-07 60.2 6.9 57 9-70 15-71 (672)
286 PRK06645 DNA polymerase III su 96.4 0.02 4.4E-07 54.9 9.1 19 10-28 44-62 (507)
287 PRK14960 DNA polymerase III su 96.3 0.01 2.2E-07 58.0 6.9 41 120-162 117-157 (702)
288 TIGR00064 ftsY signal recognit 96.3 0.1 2.2E-06 46.0 12.8 49 120-168 153-208 (272)
289 PRK07994 DNA polymerase III su 96.3 0.015 3.2E-07 57.3 8.0 33 120-153 118-150 (647)
290 PRK13341 recombination factor 96.3 0.031 6.6E-07 56.2 10.4 17 10-26 53-69 (725)
291 PF05621 TniB: Bacterial TniB 96.3 0.018 3.9E-07 50.7 7.6 54 10-68 62-118 (302)
292 PRK05563 DNA polymerase III su 96.2 0.025 5.5E-07 55.3 9.2 19 10-28 39-57 (559)
293 PRK10867 signal recognition pa 96.2 0.074 1.6E-06 50.0 11.9 19 10-28 101-119 (433)
294 PF05970 PIF1: PIF1-like helic 96.2 0.0085 1.9E-07 55.4 5.7 47 7-62 20-66 (364)
295 PRK06067 flagellar accessory p 96.2 0.082 1.8E-06 45.7 11.5 54 7-70 23-76 (234)
296 PRK04195 replication factor C 96.2 0.021 4.5E-07 55.1 8.5 18 9-26 39-56 (482)
297 PTZ00112 origin recognition co 96.2 0.086 1.9E-06 53.2 12.6 24 11-35 782-806 (1164)
298 PRK12323 DNA polymerase III su 96.2 0.015 3.3E-07 56.7 7.3 43 119-163 122-164 (700)
299 PRK14965 DNA polymerase III su 96.2 0.035 7.7E-07 54.6 10.0 43 119-163 117-159 (576)
300 KOG0739 AAA+-type ATPase [Post 96.2 0.19 4E-06 43.9 12.8 128 4-184 156-300 (439)
301 PHA00729 NTP-binding motif con 96.1 0.046 1E-06 46.3 9.0 17 10-26 18-34 (226)
302 TIGR02760 TraI_TIGR conjugativ 96.1 0.84 1.8E-05 51.6 20.8 220 10-267 447-686 (1960)
303 cd00984 DnaB_C DnaB helicase C 96.1 0.043 9.3E-07 47.7 9.2 42 6-55 10-51 (242)
304 PRK12402 replication factor C 96.1 0.026 5.7E-07 51.8 8.0 40 120-161 124-163 (337)
305 PRK14952 DNA polymerase III su 96.0 0.033 7.1E-07 54.5 8.9 43 119-163 116-158 (584)
306 PRK11054 helD DNA helicase IV; 96.0 0.012 2.5E-07 58.9 5.9 68 8-80 208-275 (684)
307 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.039 8.5E-07 48.4 8.6 39 7-54 34-72 (259)
308 TIGR02655 circ_KaiC circadian 96.0 0.054 1.2E-06 52.2 10.2 55 6-70 260-314 (484)
309 TIGR03499 FlhF flagellar biosy 96.0 0.019 4E-07 51.1 6.6 22 7-28 192-213 (282)
310 PRK08691 DNA polymerase III su 96.0 0.017 3.8E-07 56.8 6.8 40 119-159 117-156 (709)
311 TIGR00959 ffh signal recogniti 96.0 0.11 2.3E-06 48.9 11.8 19 10-28 100-118 (428)
312 PRK13833 conjugal transfer pro 96.0 0.0083 1.8E-07 54.0 4.1 47 5-58 140-186 (323)
313 PRK14959 DNA polymerase III su 96.0 0.028 6.1E-07 54.9 7.9 19 10-28 39-57 (624)
314 KOG0738 AAA+-type ATPase [Post 95.9 0.028 6.2E-07 50.7 7.2 16 10-25 246-261 (491)
315 PF01695 IstB_IS21: IstB-like 95.9 0.0098 2.1E-07 48.9 4.1 48 5-62 43-90 (178)
316 PRK14962 DNA polymerase III su 95.9 0.027 5.9E-07 53.7 7.5 19 10-28 37-55 (472)
317 PRK14961 DNA polymerase III su 95.9 0.027 5.8E-07 52.2 7.3 19 10-28 39-57 (363)
318 PRK14949 DNA polymerase III su 95.9 0.032 6.9E-07 56.5 8.0 43 120-164 118-160 (944)
319 PRK14951 DNA polymerase III su 95.8 0.026 5.7E-07 55.4 7.3 41 120-162 123-163 (618)
320 PRK14955 DNA polymerase III su 95.8 0.032 7E-07 52.3 7.7 19 10-28 39-57 (397)
321 TIGR02782 TrbB_P P-type conjug 95.8 0.013 2.9E-07 52.4 4.6 47 5-58 128-174 (299)
322 TIGR01075 uvrD DNA helicase II 95.8 0.034 7.3E-07 56.5 8.0 58 9-71 17-74 (715)
323 PRK13851 type IV secretion sys 95.8 0.0073 1.6E-07 54.9 2.9 44 5-58 158-201 (344)
324 KOG1133 Helicase of the DEAD s 95.7 2 4.3E-05 42.2 18.8 106 216-324 628-780 (821)
325 COG1474 CDC6 Cdc6-related prot 95.7 0.19 4.2E-06 46.3 12.0 27 10-37 43-69 (366)
326 PRK05986 cob(I)alamin adenolsy 95.7 0.041 8.8E-07 45.2 6.8 146 8-173 21-169 (191)
327 PRK11773 uvrD DNA-dependent he 95.7 0.038 8.2E-07 56.2 8.2 58 9-71 22-79 (721)
328 PRK06620 hypothetical protein; 95.7 0.026 5.6E-07 47.9 5.9 16 10-25 45-60 (214)
329 PRK14963 DNA polymerase III su 95.7 0.041 8.9E-07 53.0 7.9 19 10-28 37-55 (504)
330 PRK13531 regulatory ATPase Rav 95.7 0.029 6.3E-07 52.9 6.7 25 2-26 32-56 (498)
331 TIGR02928 orc1/cdc6 family rep 95.7 0.12 2.6E-06 48.0 10.9 24 10-34 41-64 (365)
332 PF03354 Terminase_1: Phage Te 95.7 0.051 1.1E-06 52.4 8.5 58 10-72 23-80 (477)
333 PRK13894 conjugal transfer ATP 95.7 0.0084 1.8E-07 54.0 2.9 47 5-58 144-190 (319)
334 cd03115 SRP The signal recogni 95.7 0.87 1.9E-05 37.1 14.8 51 120-170 81-132 (173)
335 PRK05896 DNA polymerase III su 95.7 0.035 7.6E-07 54.0 7.2 19 10-28 39-57 (605)
336 PRK09111 DNA polymerase III su 95.6 0.029 6.3E-07 55.1 6.7 40 119-159 130-169 (598)
337 PRK14873 primosome assembly pr 95.6 0.11 2.4E-06 51.8 10.7 92 201-293 170-265 (665)
338 PRK10917 ATP-dependent DNA hel 95.6 0.072 1.6E-06 53.7 9.6 76 216-291 309-389 (681)
339 TIGR01074 rep ATP-dependent DN 95.6 0.049 1.1E-06 55.0 8.5 59 8-71 13-71 (664)
340 KOG2028 ATPase related to the 95.6 0.04 8.7E-07 49.3 6.6 50 10-68 163-212 (554)
341 cd00561 CobA_CobO_BtuR ATP:cor 95.6 0.089 1.9E-06 42.0 8.1 54 119-172 93-148 (159)
342 KOG1513 Nuclear helicase MOP-3 95.6 0.018 3.9E-07 56.4 4.8 54 260-313 850-911 (1300)
343 PRK14969 DNA polymerase III su 95.5 0.066 1.4E-06 52.0 8.6 40 119-159 117-156 (527)
344 TIGR00416 sms DNA repair prote 95.5 0.1 2.2E-06 49.8 9.5 55 6-70 91-145 (454)
345 TIGR02688 conserved hypothetic 95.5 0.055 1.2E-06 50.1 7.3 26 3-28 203-228 (449)
346 TIGR02639 ClpA ATP-dependent C 95.5 0.13 2.9E-06 52.3 10.9 19 8-26 202-220 (731)
347 PRK05580 primosome assembly pr 95.4 0.15 3.3E-06 51.3 11.1 92 201-293 172-266 (679)
348 TIGR02012 tigrfam_recA protein 95.4 0.031 6.7E-07 50.2 5.6 46 7-61 53-98 (321)
349 PRK14948 DNA polymerase III su 95.4 0.097 2.1E-06 51.9 9.5 19 10-28 39-57 (620)
350 TIGR00767 rho transcription te 95.4 0.085 1.8E-06 48.6 8.4 21 5-25 164-184 (415)
351 PHA00350 putative assembly pro 95.4 0.13 2.9E-06 47.5 9.7 17 12-28 4-20 (399)
352 PRK11034 clpA ATP-dependent Cl 95.4 0.073 1.6E-06 53.9 8.7 19 8-26 206-224 (758)
353 COG0470 HolB ATPase involved i 95.4 0.07 1.5E-06 48.6 8.0 40 120-161 108-147 (325)
354 PRK05973 replicative DNA helic 95.4 0.04 8.7E-07 47.2 5.9 55 6-70 61-115 (237)
355 cd01128 rho_factor Transcripti 95.4 0.087 1.9E-06 45.7 8.0 21 4-24 11-31 (249)
356 PRK14957 DNA polymerase III su 95.4 0.067 1.4E-06 51.9 8.0 40 119-159 117-156 (546)
357 COG1066 Sms Predicted ATP-depe 95.4 0.18 3.8E-06 46.2 10.0 93 7-136 91-183 (456)
358 PRK09376 rho transcription ter 95.3 0.12 2.6E-06 47.5 9.1 23 3-25 163-185 (416)
359 COG1444 Predicted P-loop ATPas 95.3 0.11 2.3E-06 51.8 9.3 125 11-163 233-357 (758)
360 PF03237 Terminase_6: Terminas 95.3 0.41 8.8E-06 44.4 13.2 145 13-177 1-154 (384)
361 PRK13900 type IV secretion sys 95.3 0.015 3.2E-07 52.9 3.3 43 6-58 157-199 (332)
362 PRK08451 DNA polymerase III su 95.3 0.075 1.6E-06 51.3 8.1 40 119-159 115-154 (535)
363 COG0552 FtsY Signal recognitio 95.3 0.36 7.7E-06 43.1 11.5 131 11-173 141-280 (340)
364 PRK07940 DNA polymerase III su 95.3 0.11 2.4E-06 48.4 8.9 45 120-166 116-160 (394)
365 TIGR00643 recG ATP-dependent D 95.2 0.11 2.4E-06 52.0 9.2 76 216-291 283-363 (630)
366 TIGR00595 priA primosomal prot 95.2 0.16 3.4E-06 49.2 10.0 91 202-293 8-101 (505)
367 PRK08760 replicative DNA helic 95.2 0.13 2.7E-06 49.5 9.2 115 6-134 226-352 (476)
368 PRK14950 DNA polymerase III su 95.2 0.096 2.1E-06 51.8 8.6 19 10-28 39-57 (585)
369 TIGR03600 phage_DnaB phage rep 95.1 0.15 3.2E-06 48.4 9.6 117 6-135 191-319 (421)
370 TIGR02397 dnaX_nterm DNA polym 95.1 0.051 1.1E-06 50.3 6.4 17 10-26 37-53 (355)
371 PF13177 DNA_pol3_delta2: DNA 95.1 0.23 5.1E-06 40.0 9.4 41 120-161 101-141 (162)
372 COG1110 Reverse gyrase [DNA re 95.1 0.069 1.5E-06 54.1 7.3 72 206-277 114-191 (1187)
373 COG4626 Phage terminase-like p 95.1 0.19 4.2E-06 47.8 10.0 130 10-160 87-223 (546)
374 PRK06904 replicative DNA helic 95.1 0.22 4.8E-06 47.7 10.6 118 6-135 218-348 (472)
375 COG1219 ClpX ATP-dependent pro 95.1 0.017 3.7E-07 50.7 2.8 27 7-35 95-121 (408)
376 PF01443 Viral_helicase1: Vira 95.1 0.032 6.8E-07 48.2 4.5 14 12-25 1-14 (234)
377 PRK04328 hypothetical protein; 95.1 0.049 1.1E-06 47.5 5.7 54 7-70 21-74 (249)
378 TIGR00665 DnaB replicative DNA 95.0 0.16 3.6E-06 48.3 9.6 115 6-134 192-318 (434)
379 TIGR00708 cobA cob(I)alamin ad 95.0 0.094 2E-06 42.5 6.7 54 119-172 95-150 (173)
380 KOG0298 DEAD box-containing he 95.0 0.041 8.8E-07 56.8 5.5 98 214-315 1218-1315(1394)
381 COG2805 PilT Tfp pilus assembl 95.0 0.043 9.3E-07 47.9 4.8 25 12-37 128-152 (353)
382 PRK09354 recA recombinase A; P 95.0 0.069 1.5E-06 48.5 6.4 44 8-60 59-102 (349)
383 TIGR03015 pepcterm_ATPase puta 95.0 0.14 2.9E-06 45.3 8.3 16 10-25 44-59 (269)
384 PRK10416 signal recognition pa 94.9 0.74 1.6E-05 41.7 13.0 46 120-165 195-247 (318)
385 COG0467 RAD55 RecA-superfamily 94.9 0.057 1.2E-06 47.5 5.7 57 6-72 20-76 (260)
386 PF05729 NACHT: NACHT domain 94.9 0.24 5.2E-06 39.8 9.1 24 12-36 3-26 (166)
387 TIGR03689 pup_AAA proteasome A 94.9 0.16 3.5E-06 48.8 9.0 18 8-25 215-232 (512)
388 PRK03992 proteasome-activating 94.9 0.1 2.2E-06 48.8 7.6 18 8-25 164-181 (389)
389 TIGR00678 holB DNA polymerase 94.9 0.1 2.3E-06 43.3 7.0 24 10-34 15-38 (188)
390 TIGR02785 addA_Gpos recombinat 94.9 0.089 1.9E-06 56.7 8.0 113 8-132 13-126 (1232)
391 TIGR00635 ruvB Holliday juncti 94.8 0.17 3.6E-06 45.7 8.6 17 10-26 31-47 (305)
392 PRK07133 DNA polymerase III su 94.8 0.12 2.5E-06 51.6 7.9 19 10-28 41-59 (725)
393 PHA02533 17 large terminase pr 94.7 0.17 3.6E-06 49.2 8.7 132 9-161 74-209 (534)
394 PRK09087 hypothetical protein; 94.7 0.11 2.4E-06 44.5 6.8 16 10-25 45-60 (226)
395 KOG0058 Peptide exporter, ABC 94.7 0.091 2E-06 51.5 6.7 42 119-161 620-661 (716)
396 TIGR02868 CydC thiol reductant 94.7 0.052 1.1E-06 53.2 5.3 39 119-157 486-524 (529)
397 PF03969 AFG1_ATPase: AFG1-lik 94.7 0.21 4.5E-06 46.0 8.8 111 7-165 60-171 (362)
398 PF03796 DnaB_C: DnaB-like hel 94.6 0.1 2.2E-06 45.8 6.7 116 7-135 17-144 (259)
399 PRK13695 putative NTPase; Prov 94.6 0.44 9.5E-06 39.0 10.0 17 11-27 2-18 (174)
400 CHL00176 ftsH cell division pr 94.6 0.17 3.7E-06 50.3 8.7 17 9-25 216-232 (638)
401 PRK14971 DNA polymerase III su 94.6 0.2 4.3E-06 49.7 9.1 41 119-161 119-159 (614)
402 PRK07004 replicative DNA helic 94.6 0.21 4.6E-06 47.7 9.0 116 6-134 210-337 (460)
403 COG0466 Lon ATP-dependent Lon 94.6 0.11 2.4E-06 50.8 7.0 50 97-150 396-446 (782)
404 TIGR01243 CDC48 AAA family ATP 94.6 0.28 6E-06 50.2 10.4 19 7-25 210-228 (733)
405 PRK00440 rfc replication facto 94.6 0.38 8.3E-06 43.6 10.5 38 121-159 102-139 (319)
406 COG1618 Predicted nucleotide k 94.6 0.062 1.4E-06 42.4 4.4 118 10-148 6-129 (179)
407 COG2909 MalT ATP-dependent tra 94.6 0.078 1.7E-06 52.8 6.1 43 121-163 129-171 (894)
408 KOG1513 Nuclear helicase MOP-3 94.5 0.015 3.3E-07 56.9 1.2 138 12-162 292-454 (1300)
409 KOG0741 AAA+-type ATPase [Post 94.5 0.34 7.5E-06 45.8 9.7 36 10-56 539-574 (744)
410 COG1198 PriA Primosomal protei 94.5 0.14 3E-06 51.2 7.7 95 196-291 222-319 (730)
411 PRK05748 replicative DNA helic 94.5 0.26 5.5E-06 47.2 9.4 116 6-134 200-327 (448)
412 TIGR03345 VI_ClpV1 type VI sec 94.5 0.44 9.5E-06 49.3 11.6 18 9-26 208-225 (852)
413 PF00437 T2SE: Type II/IV secr 94.5 0.034 7.4E-07 49.2 3.3 44 6-58 124-167 (270)
414 TIGR01073 pcrA ATP-dependent D 94.5 0.14 2.9E-06 52.4 7.9 59 8-71 16-74 (726)
415 PRK04841 transcriptional regul 94.4 0.38 8.2E-06 50.6 11.4 43 121-163 121-163 (903)
416 TIGR03346 chaperone_ClpB ATP-d 94.4 0.3 6.5E-06 50.7 10.3 19 8-26 193-211 (852)
417 PRK06647 DNA polymerase III su 94.4 0.15 3.3E-06 49.9 7.8 19 10-28 39-57 (563)
418 PRK14954 DNA polymerase III su 94.4 0.15 3.3E-06 50.3 7.8 19 10-28 39-57 (620)
419 CHL00095 clpC Clp protease ATP 94.4 0.13 2.7E-06 53.2 7.6 19 8-26 199-217 (821)
420 PRK07471 DNA polymerase III su 94.3 0.31 6.8E-06 45.0 9.3 42 119-161 139-180 (365)
421 PF06733 DEAD_2: DEAD_2; Inte 94.3 0.021 4.6E-07 46.8 1.5 44 92-135 115-159 (174)
422 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.3 0.17 3.7E-06 39.9 6.6 43 119-164 86-128 (144)
423 PTZ00454 26S protease regulato 94.3 0.38 8.3E-06 45.0 9.8 19 7-25 177-195 (398)
424 PRK12608 transcription termina 94.3 0.4 8.6E-06 44.0 9.5 21 5-25 129-149 (380)
425 PRK08006 replicative DNA helic 94.2 0.55 1.2E-05 45.0 11.0 116 7-134 222-349 (471)
426 PRK09112 DNA polymerase III su 94.2 0.15 3.2E-06 46.8 6.9 40 119-159 139-178 (351)
427 TIGR03880 KaiC_arch_3 KaiC dom 94.2 0.13 2.8E-06 44.1 6.2 54 7-70 14-67 (224)
428 TIGR00763 lon ATP-dependent pr 94.2 0.19 4.1E-06 51.6 8.3 18 8-25 346-363 (775)
429 PRK08840 replicative DNA helic 94.2 0.49 1.1E-05 45.3 10.4 117 6-134 214-342 (464)
430 PRK05298 excinuclease ABC subu 94.2 0.26 5.5E-06 49.5 8.9 50 11-72 34-83 (652)
431 TIGR01241 FtsH_fam ATP-depende 94.1 0.28 6.2E-06 47.6 9.0 17 9-25 88-104 (495)
432 COG2255 RuvB Holliday junction 94.1 0.14 3.1E-06 44.4 6.0 16 11-26 54-69 (332)
433 PRK00080 ruvB Holliday junctio 94.1 0.18 3.9E-06 46.1 7.2 17 10-26 52-68 (328)
434 PRK08506 replicative DNA helic 94.1 0.31 6.7E-06 46.8 9.0 115 6-134 189-315 (472)
435 TIGR00580 mfd transcription-re 94.1 0.17 3.7E-06 52.5 7.7 76 216-291 499-579 (926)
436 PF03266 NTPase_1: NTPase; In 94.0 0.056 1.2E-06 43.9 3.4 28 120-147 94-123 (168)
437 COG4962 CpaF Flp pilus assembl 94.0 0.04 8.8E-07 49.1 2.7 48 3-60 166-214 (355)
438 PRK14953 DNA polymerase III su 94.0 0.14 3.1E-06 49.2 6.6 17 12-28 41-57 (486)
439 PRK09165 replicative DNA helic 94.0 0.41 8.8E-06 46.3 9.7 124 6-134 214-354 (497)
440 COG1200 RecG RecG-like helicas 94.0 0.36 7.9E-06 47.2 9.1 78 214-291 308-390 (677)
441 PRK14712 conjugal transfer nic 94.0 0.34 7.3E-06 52.8 9.8 50 9-63 852-901 (1623)
442 PRK05636 replicative DNA helic 94.0 0.35 7.6E-06 46.7 9.2 115 7-134 263-388 (505)
443 PF13555 AAA_29: P-loop contai 94.0 0.085 1.8E-06 34.5 3.4 18 8-25 22-39 (62)
444 cd01126 TraG_VirD4 The TraG/Tr 94.0 0.028 6E-07 52.6 1.7 49 11-70 1-49 (384)
445 TIGR02655 circ_KaiC circadian 93.9 0.12 2.5E-06 50.0 5.8 57 6-71 18-74 (484)
446 PHA00012 I assembly protein 93.9 2.1 4.4E-05 38.4 12.8 53 118-171 78-136 (361)
447 COG4555 NatA ABC-type Na+ tran 93.9 0.18 4E-06 41.5 5.9 54 119-172 149-202 (245)
448 PF02534 T4SS-DNA_transf: Type 93.9 0.044 9.6E-07 52.8 2.9 50 10-70 45-94 (469)
449 KOG0701 dsRNA-specific nucleas 93.8 0.034 7.3E-07 59.5 2.1 99 214-312 289-399 (1606)
450 COG1132 MdlB ABC-type multidru 93.8 0.14 3.1E-06 50.7 6.4 39 119-157 481-519 (567)
451 PRK05595 replicative DNA helic 93.8 0.35 7.6E-06 46.2 8.8 54 7-69 199-252 (444)
452 PF10593 Z1: Z1 domain; Inter 93.8 0.49 1.1E-05 40.8 8.7 97 231-334 101-203 (239)
453 KOG0733 Nuclear AAA ATPase (VC 93.7 0.45 9.8E-06 45.9 9.0 48 119-166 602-659 (802)
454 KOG0744 AAA+-type ATPase [Post 93.7 0.6 1.3E-05 41.5 9.1 73 7-83 175-258 (423)
455 PRK06305 DNA polymerase III su 93.7 0.2 4.3E-06 47.8 6.8 19 10-28 40-58 (451)
456 PRK10865 protein disaggregatio 93.6 0.48 1E-05 49.2 10.0 19 8-26 198-216 (857)
457 TIGR02525 plasmid_TraJ plasmid 93.6 0.095 2.1E-06 48.3 4.4 27 8-35 148-174 (372)
458 PRK13897 type IV secretion sys 93.6 0.063 1.4E-06 52.8 3.3 52 8-70 157-208 (606)
459 PF02572 CobA_CobO_BtuR: ATP:c 93.5 0.9 1.9E-05 36.8 9.4 141 12-172 6-149 (172)
460 PF10412 TrwB_AAD_bind: Type I 93.5 0.13 2.9E-06 48.0 5.2 53 3-64 9-61 (386)
461 PRK06321 replicative DNA helic 93.4 0.86 1.9E-05 43.7 10.7 114 7-134 224-349 (472)
462 KOG0734 AAA+-type ATPase conta 93.4 0.43 9.3E-06 45.3 8.2 46 120-165 395-450 (752)
463 PRK14970 DNA polymerase III su 93.4 0.52 1.1E-05 43.8 9.1 17 10-26 40-56 (367)
464 PRK13709 conjugal transfer nic 93.4 0.57 1.2E-05 51.7 10.4 50 9-63 984-1033(1747)
465 COG2804 PulE Type II secretory 93.4 0.082 1.8E-06 49.8 3.6 23 12-35 261-283 (500)
466 TIGR01243 CDC48 AAA family ATP 93.4 0.39 8.4E-06 49.1 8.8 18 8-25 486-503 (733)
467 COG2109 BtuR ATP:corrinoid ade 93.4 0.62 1.3E-05 37.9 8.0 143 12-173 31-176 (198)
468 cd01393 recA_like RecA is a b 93.3 0.25 5.4E-06 42.4 6.4 47 7-56 17-63 (226)
469 cd01131 PilT Pilus retraction 93.3 0.13 2.7E-06 43.2 4.4 22 12-34 4-25 (198)
470 KOG2228 Origin recognition com 93.3 1.1 2.4E-05 40.1 10.1 18 8-25 48-65 (408)
471 TIGR02788 VirB11 P-type DNA tr 93.2 0.079 1.7E-06 47.8 3.3 20 6-25 141-160 (308)
472 cd01127 TrwB Bacterial conjuga 93.2 0.11 2.4E-06 49.0 4.3 49 4-61 37-85 (410)
473 TIGR02858 spore_III_AA stage I 93.2 0.32 6.9E-06 42.8 6.8 16 10-25 112-127 (270)
474 TIGR00614 recQ_fam ATP-depende 93.1 5 0.00011 38.8 15.5 60 216-275 50-109 (470)
475 PF01637 Arch_ATPase: Archaeal 93.1 0.44 9.6E-06 40.8 7.7 17 9-25 20-36 (234)
476 PRK05707 DNA polymerase III su 93.1 0.68 1.5E-05 42.1 9.0 43 119-163 104-146 (328)
477 KOG1132 Helicase of the DEAD s 93.0 4.2 9E-05 41.2 14.6 107 216-323 560-721 (945)
478 PF01078 Mg_chelatase: Magnesi 93.0 0.058 1.3E-06 44.9 1.9 21 5-25 18-38 (206)
479 COG0630 VirB11 Type IV secreto 93.0 0.078 1.7E-06 47.8 2.8 44 5-58 139-182 (312)
480 PF04665 Pox_A32: Poxvirus A32 92.9 0.15 3.3E-06 43.7 4.3 36 10-54 14-49 (241)
481 TIGR01420 pilT_fam pilus retra 92.9 0.15 3.2E-06 46.9 4.6 43 8-58 121-163 (343)
482 PF12846 AAA_10: AAA-like doma 92.9 0.19 4E-06 45.2 5.3 42 10-60 2-43 (304)
483 PF05876 Terminase_GpA: Phage 92.9 0.12 2.5E-06 50.7 4.0 108 10-134 34-147 (557)
484 cd01130 VirB11-like_ATPase Typ 92.9 0.066 1.4E-06 44.4 2.0 21 5-25 21-41 (186)
485 PRK08699 DNA polymerase III su 92.9 0.96 2.1E-05 41.1 9.6 42 120-163 112-153 (325)
486 TIGR02784 addA_alphas double-s 92.8 0.25 5.3E-06 53.2 6.7 104 5-114 6-125 (1141)
487 TIGR02524 dot_icm_DotB Dot/Icm 92.8 0.15 3.3E-06 46.8 4.5 27 8-35 133-159 (358)
488 cd03239 ABC_SMC_head The struc 92.8 0.16 3.4E-06 41.8 4.1 41 120-160 115-156 (178)
489 TIGR02237 recomb_radB DNA repa 92.7 0.2 4.3E-06 42.4 4.9 40 7-55 10-49 (209)
490 PHA02542 41 41 helicase; Provi 92.7 0.52 1.1E-05 45.1 8.1 52 7-68 188-239 (473)
491 PRK08769 DNA polymerase III su 92.7 0.89 1.9E-05 41.1 9.1 41 119-160 111-151 (319)
492 cd03222 ABC_RNaseL_inhibitor T 92.7 0.38 8.1E-06 39.5 6.2 47 119-165 87-134 (177)
493 PRK07773 replicative DNA helic 92.6 0.57 1.2E-05 48.9 8.8 116 6-134 214-340 (886)
494 TIGR00602 rad24 checkpoint pro 92.6 0.64 1.4E-05 46.1 8.7 18 9-26 110-127 (637)
495 PRK10689 transcription-repair 92.6 0.41 8.8E-06 51.1 7.8 76 216-291 648-728 (1147)
496 PRK13764 ATPase; Provisional 92.6 0.18 4E-06 49.3 4.9 27 7-34 255-281 (602)
497 cd00983 recA RecA is a bacter 92.5 0.3 6.5E-06 44.1 5.8 46 7-61 53-98 (325)
498 COG0606 Predicted ATPase with 92.5 0.068 1.5E-06 49.8 1.8 21 5-25 194-214 (490)
499 COG0464 SpoVK ATPases of the A 92.5 1 2.2E-05 43.8 10.0 44 121-164 335-388 (494)
500 COG0541 Ffh Signal recognition 92.4 2.1 4.5E-05 39.9 11.0 133 10-173 101-235 (451)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-73 Score=488.36 Aligned_cols=375 Identities=66% Similarity=1.011 Sum_probs=362.8
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
-||.+++|+|||..|.||||||.+|++|++++++..+ ..++++|++|||+|+.|+.+.++.++...++++..+.
T Consensus 91 aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p------~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lv 164 (476)
T KOG0330|consen 91 AIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP------KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLV 164 (476)
T ss_pred hcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC------CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEe
Confidence 3799999999999999999999999999999999866 6789999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
||.+...+...+...++|+|+||++|++++.+.+.|.+..++++|+||||++++..|.+.+..|+..+|..+|.+++|||
T Consensus 165 GG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsAT 244 (476)
T KOG0330|consen 165 GGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSAT 244 (476)
T ss_pred cCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEee
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
++..+..+....+.+|..+.+...+...+.+.+.|.+++..+|..++.+++++..+.++||||+++..+.+++-.|+..|
T Consensus 245 Mt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg 324 (476)
T KOG0330|consen 245 MTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLG 324 (476)
T ss_pred cchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
+.+..+||+|++..|...++.|++|.++||+|||++++|+|+|.+++|||||.|.+..+|+||+||++|.|..|.+++++
T Consensus 325 ~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlV 404 (476)
T KOG0330|consen 325 FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLV 404 (476)
T ss_pred cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhcCCcccccCCCC
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTEAKRISQMTIKDSGNKRRRKGGDE 382 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (401)
+.+|.+.+.+||..++++++.++.+.+.+..+.+++.++.+.+.+.++..|.++.++++++
T Consensus 405 tqyDve~~qrIE~~~gkkl~~~~~~~~~~~~l~erv~eA~~~a~m~~ke~~~~~g~~~~~~ 465 (476)
T KOG0330|consen 405 TQYDVELVQRIEHALGKKLPEYKVDKNEVMSLNERVAEAQKEAGMEMKELGKRKGKRPQGD 465 (476)
T ss_pred ehhhhHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHHHHHHhccchhhhccccCCCCccc
Confidence 9999999999999999999999999999999999999999999999999988885554443
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-63 Score=450.31 Aligned_cols=344 Identities=37% Similarity=0.558 Sum_probs=315.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
-+|+++.|+|++..|.||||||++|++|++..+...........++++||++|||+||.|+...+.+++...+++..+++
T Consensus 121 ~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvy 200 (519)
T KOG0331|consen 121 GWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVY 200 (519)
T ss_pred ccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEe
Confidence 36799999999999999999999999999999987433333346889999999999999999999999999899999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC-CCCceEEEEee
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQTYLFSA 160 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SA 160 (401)
||.+...+...+..+.+|+|+||+++.+++.... ..+..+.++|+||||+|++.+|.+.+..|++.+ ++..|++++||
T Consensus 201 GG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~-~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~sa 279 (519)
T KOG0331|consen 201 GGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS-LNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSA 279 (519)
T ss_pred CCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC-ccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEee
Confidence 9999999999999999999999999999998866 689999999999999999999999999999999 55558999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccc--cccccceEEEEEcCCCChhHHHHHHHHhc---CCCCEEEEecchHHHHHHHH
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKY--STVDTLKQQYRFVPAKYKDCYLVYILTEV---SASSTMVFTRTCDATRLLAL 235 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~ivf~~~~~~~~~l~~ 235 (401)
|+|..+..+...++.+|..+.+.... ....++.|....++...|...+..++... .++++||||+|++.|++++.
T Consensus 280 Twp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~ 359 (519)
T KOG0331|consen 280 TWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELAR 359 (519)
T ss_pred eccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHH
Confidence 99999999999999999999887553 56678888888888888888888888766 57799999999999999999
Q ss_pred HHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCc
Q 015759 236 MLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG 315 (401)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g 315 (401)
.++..++++..+||+.++.+|..+++.|++|++.|||||+++++|+|+|++++|||||+|.++++|+||+||+||.|+.|
T Consensus 360 ~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G 439 (519)
T KOG0331|consen 360 NLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKG 439 (519)
T ss_pred HHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHHHhCCCCCCCCCC
Q 015759 316 VAISLVNQYELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 316 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
.+++|+...+......+.+.+......++..
T Consensus 440 ~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~ 470 (519)
T KOG0331|consen 440 TAITFFTSDNAKLARELIKVLREAGQTVPPD 470 (519)
T ss_pred eEEEEEeHHHHHHHHHHHHHHHHccCCCChH
Confidence 9999999999988888888886665555554
No 3
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-63 Score=422.09 Aligned_cols=367 Identities=49% Similarity=0.728 Sum_probs=341.9
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.+|.++.|+|||-+|.||||||.+|.+|+++++.+++ .+..++|++||++|+.|+.+.+...+...+++++++.
T Consensus 37 cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP------~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~viv 110 (442)
T KOG0340|consen 37 CIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP------YGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIV 110 (442)
T ss_pred hhHHHhcccccccccccCCCcchhhhHHHHHhhccCC------CcceEEEecchHHHHHHHHHHHHHhcccccceEEEEE
Confidence 4799999999999999999999999999999999877 8889999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCC---CCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEE
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK---GFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~---~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 158 (401)
||.+...+...+.+.+|++|+||+++.+++.... ...++++.++|+|||+++++..|.+.+..+.+.+|..+|.++|
T Consensus 111 GG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlf 190 (442)
T KOG0340|consen 111 GGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLF 190 (442)
T ss_pred ccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEE
Confidence 9999999999999999999999999999998863 2467899999999999999999999999999999999999999
Q ss_pred eecCchHHHHHHHHhcCC--CeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcC---CCCEEEEecchHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVS---ASSTMVFTRTCDATRLL 233 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~ivf~~~~~~~~~l 233 (401)
|||+.+.+..+...-... ...+.........+.+.+.|..++...+..++..++.... .+.++||+|+..+|+.+
T Consensus 191 SATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l 270 (442)
T KOG0340|consen 191 SATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLL 270 (442)
T ss_pred EeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHH
Confidence 999999888776665554 3444555566677888999999999999999999998663 57899999999999999
Q ss_pred HHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 234 ALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
+..|+..++.+..+||.|++.+|...+.+|+++..+|||||+++++|+|+|.++.|||||.|.++.+|+||+||+.|+|+
T Consensus 271 ~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR 350 (442)
T KOG0340|consen 271 SMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGR 350 (442)
T ss_pred HHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 015759 314 TGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTEAKRISQMTIKDSGNK 374 (401)
Q Consensus 314 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (401)
.|.+++++.+.|.+.+..+++..++++.+.+.....+...+..+..+++.+.+.+.++|+.
T Consensus 351 ~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~akrea~m~m~~~~F~ 411 (442)
T KOG0340|consen 351 KGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVAKREAEMKMDNNGFG 411 (442)
T ss_pred CcceEEEechhhHHHHHHHHHHHhcccccccccchhhheehhhHHHHHHHHHHHhhhcchh
Confidence 9999999999999999999999999999999999888889999999999999999888653
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-60 Score=451.92 Aligned_cols=334 Identities=45% Similarity=0.695 Sum_probs=310.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCcee-EEEEcCcHHHHHHHHHHHHHhccCC-CceEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFF-ACVLSPTRELAIQISEQFEALGSGI-SLRCAV 79 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~-~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~ 79 (401)
.||.++.|+|+++.|+||||||++|++|+++.+..... .... +||++|||+||.|+++.+..++... ++++..
T Consensus 59 ~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~-----~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~ 133 (513)
T COG0513 59 AIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE-----RKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAV 133 (513)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc-----cCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEE
Confidence 47899999999999999999999999999999663211 1111 9999999999999999999999887 799999
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
++||.+...+...+..+++|+|+||+++++++... .+.+..+.++|+||||+|++.+|.+.+..++..+|..+|+++||
T Consensus 134 i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfS 212 (513)
T COG0513 134 VYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFS 212 (513)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEe
Confidence 99999999888888888999999999999999987 47899999999999999999999999999999999999999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEeccccc--ccccceEEEEEcCCCC-hhHHHHHHHHhcCCCCEEEEecchHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~ 236 (401)
||++..+..+...++.+|..+.+..... ....+.+.+..++... |...+..++......++||||+++..++.++..
T Consensus 213 AT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~ 292 (513)
T COG0513 213 ATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAES 292 (513)
T ss_pred cCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 9999999999999999998888775544 7789999999999876 999999999988888999999999999999999
Q ss_pred HHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCce
Q 015759 237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV 316 (401)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~ 316 (401)
|...|+.+..+||++++.+|.+.++.|++|+.+|||||+++++|||+|++++|||||.|.+++.|+||+||+||.|..|.
T Consensus 293 l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ 372 (513)
T COG0513 293 LRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGV 372 (513)
T ss_pred HHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccc-cHHHHHHHHHHhCCCCC
Q 015759 317 AISLVNQY-ELEWYLQIEKLIGKKLP 341 (401)
Q Consensus 317 ~i~~~~~~-~~~~~~~~~~~~~~~~~ 341 (401)
+++|+.+. +...+..+++.++..++
T Consensus 373 ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 373 AISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999986 89999999999877655
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.2e-60 Score=444.36 Aligned_cols=350 Identities=34% Similarity=0.498 Sum_probs=310.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhc-CCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~-~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
.+|.+++|+|++++||||||||++|++|+++.+....... ....++++||++||++|+.|+++.+..+....++++..+
T Consensus 38 aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~ 117 (423)
T PRK04837 38 ALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLA 117 (423)
T ss_pred HHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEE
Confidence 4688999999999999999999999999999988644321 112457899999999999999999999988889999999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCC--CceEEEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--MRQTYLF 158 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~ 158 (401)
+|+.....+...+..+++|+|+||+++.+++.... +.+.+++++|+||||++++.+|...+..++..++. ..+.+++
T Consensus 118 ~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~-~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~ 196 (423)
T PRK04837 118 YGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNH-INLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLF 196 (423)
T ss_pred ECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEE
Confidence 99988877777777789999999999999887643 67899999999999999999999999999998874 4568999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
|||++..+..+....+.+|..+...........+.+.+.......+...+..++......++||||+++..|+.+++.|.
T Consensus 197 SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~ 276 (423)
T PRK04837 197 SATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA 276 (423)
T ss_pred eccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHH
Confidence 99999999999888888888877665555555666666666666677778888877778899999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEE
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAI 318 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i 318 (401)
..|+.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|+.|.++
T Consensus 277 ~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai 356 (423)
T PRK04837 277 ADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSI 356 (423)
T ss_pred hCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHhCCCCCCCCCCHHHHHH
Q 015759 319 SLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLL 352 (401)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (401)
+|+.+.+...+..+++.++..++..+.+.+++..
T Consensus 357 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 390 (423)
T PRK04837 357 SLACEEYALNLPAIETYIGHSIPVSKYDSDALLT 390 (423)
T ss_pred EEeCHHHHHHHHHHHHHhCCCCCCccCChhhhhh
Confidence 9999999999999999999998888777766654
No 6
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-61 Score=422.58 Aligned_cols=344 Identities=42% Similarity=0.629 Sum_probs=317.9
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
-||.++-|+|++.+|.||||||.+|++|+++++++.+..- ...+|||+||||+|+.|++...++++....|.++.+.
T Consensus 211 ~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~---~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~v 287 (691)
T KOG0338|consen 211 TIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKV---AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAV 287 (691)
T ss_pred cccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccC---cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeee
Confidence 3788899999999999999999999999999999876543 6778999999999999999999999988899999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
||.+...+...++..+||+|+||++|.+|+.+.+.|.++++.++|+||||+|++.+|.+.+..|+..+|+++|.++||||
T Consensus 288 GGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSAT 367 (691)
T KOG0338|consen 288 GGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSAT 367 (691)
T ss_pred cCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC---CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA---KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
++..+..+...-+..|+.+.+.+.......+.+.|..+.. ..+...+..++.......+|||+.|.+.|..+.-.|-
T Consensus 368 MteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllG 447 (691)
T KOG0338|consen 368 MTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLG 447 (691)
T ss_pred hHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHH
Confidence 9999999999999999999999888777777777766653 3467778888887788999999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEE
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAI 318 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i 318 (401)
-.|..+.-+||.+++.+|...++.|++++++|||||+++++|+|++++.+||||+.|.+.+.|+||+||+.|+|+.|.++
T Consensus 448 Llgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV 527 (691)
T KOG0338|consen 448 LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV 527 (691)
T ss_pred HhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHH---hCCCCCCCCCCHH
Q 015759 319 SLVNQYELEWYLQIEKL---IGKKLPEFPAEEE 348 (401)
Q Consensus 319 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 348 (401)
+|+.+.+...++.+.+. .+.++..-.++++
T Consensus 528 tlvgE~dRkllK~iik~~~~a~~klk~R~i~~~ 560 (691)
T KOG0338|consen 528 TLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPE 560 (691)
T ss_pred EEeccccHHHHHHHHhhhhhcccchhhcCCCHH
Confidence 99999999999998877 3444444444433
No 7
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-61 Score=396.44 Aligned_cols=339 Identities=33% Similarity=0.534 Sum_probs=319.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|++++|+|++++|..|+|||.+|.+.+++.+.-.. ...++||++|||+|+.|+.+.+..++...++.+..+.|
T Consensus 58 i~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~------r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacig 131 (400)
T KOG0328|consen 58 IPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV------RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIG 131 (400)
T ss_pred hhhhhcccceEEEecCCCCceEEEEeeeeeeccccc------ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEec
Confidence 688999999999999999999999888887665432 55789999999999999999999999999999999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
|.+..+....+..+.+++.+||+++++.+.... +.-..+.++|+||+|.|++.+|..++-.+++.+|+..|++++|||+
T Consensus 132 g~n~gedikkld~G~hvVsGtPGrv~dmikr~~-L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl 210 (400)
T KOG0328|consen 132 GKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS-LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL 210 (400)
T ss_pred CCccchhhhhhcccceEeeCCCchHHHHHHhcc-ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC
Confidence 999888888888899999999999999888755 6778899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC-ChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
|.++.++...+..+|..+.+.........+.++|..+..+ +|...+..+.....-.+.+|||||+..+.++.+.+++..
T Consensus 211 p~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~n 290 (400)
T KOG0328|consen 211 PHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN 290 (400)
T ss_pred cHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhC
Confidence 9999999999999999999998888888999999998765 599999999888888999999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
..|...||+|++++|.++++.|++|+.+|||+|++.++|+|+|.+++|||||+|-+.+.|+||+||.||+|++|.++-|+
T Consensus 291 ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFV 370 (400)
T KOG0328|consen 291 FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 370 (400)
T ss_pred ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCCHH
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAEEE 348 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (401)
..+|...+.+++++++..+.++|+.-.
T Consensus 371 k~~d~~~lrdieq~yst~i~emp~nva 397 (400)
T KOG0328|consen 371 KSDDLRILRDIEQYYSTQIDEMPMNVA 397 (400)
T ss_pred cHHHHHHHHHHHHHHhhhcccccchhh
Confidence 999999999999999999999998743
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.1e-59 Score=442.84 Aligned_cols=344 Identities=38% Similarity=0.578 Sum_probs=309.1
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.+|.+++|+|++++||||||||++|++|+++.+.............++||++||++|+.|+.+.++.+....++.+..++
T Consensus 31 ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~ 110 (456)
T PRK10590 31 AIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVF 110 (456)
T ss_pred HHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 46889999999999999999999999999999876432222223468999999999999999999999888889999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.+...+...+...++|+|+||++|++++.... +.++.+++||+||||++++.+|...+..++..++...|++++|||
T Consensus 111 gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~-~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT 189 (456)
T PRK10590 111 GGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA-VKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSAT 189 (456)
T ss_pred CCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC-cccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCC
Confidence 9998888777777889999999999999877644 578899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
+++.+..+...++.++..+...........+.+.+..++...+...+..++......++||||+++..++.+++.|...+
T Consensus 190 ~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g 269 (456)
T PRK10590 190 FSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG 269 (456)
T ss_pred CcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC
Confidence 99999999999998988887766655666777888888877777888888877778899999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
+.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+|+.|.++.+|+||+||+||.|..|.+++++
T Consensus 270 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 270 IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCC
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
..++...+..+++.++..++....+
T Consensus 350 ~~~d~~~~~~ie~~l~~~~~~~~~~ 374 (456)
T PRK10590 350 CVDEHKLLRDIEKLLKKEIPRIAIP 374 (456)
T ss_pred cHHHHHHHHHHHHHhcCCCcccccC
Confidence 9999999999999998887655444
No 9
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.7e-59 Score=408.74 Aligned_cols=352 Identities=39% Similarity=0.586 Sum_probs=313.1
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~ 80 (401)
.|+.++.|+|+++.|-||+|||++|++|+++.+...+.... .+..++|+||||+|+.|++.+++++.... ++.+..+
T Consensus 112 ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r--~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~v 189 (543)
T KOG0342|consen 112 TIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR--NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIV 189 (543)
T ss_pred hcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC--CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEE
Confidence 47889999999999999999999999999999987654333 67779999999999999999999988776 8999999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
.||.+.......+..+++|+|+||++|++++.+.+.+.+.+.+++|+||||++++.+|...+..|+..+|+.+|.++|||
T Consensus 190 iGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSA 269 (543)
T KOG0342|consen 190 IGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSA 269 (543)
T ss_pred eCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeC
Confidence 99999988888888899999999999999999998888888899999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhcCC-CeEEEeccc--ccccccceEEEEEcCCCChhHHHHHHHHhcCC-CCEEEEecchHHHHHHHHH
Q 015759 161 TMTKKVKKLQRACLKN-PVKIEAASK--YSTVDTLKQQYRFVPAKYKDCYLVYILTEVSA-SSTMVFTRTCDATRLLALM 236 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~ivf~~~~~~~~~l~~~ 236 (401)
|.++.++.+....+.. +..+..... ....+.+.|.|..++...+...+..+++.+.. .++||||+|+.....+++.
T Consensus 270 T~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~l 349 (543)
T KOG0342|consen 270 TQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAEL 349 (543)
T ss_pred CCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHH
Confidence 9999999999988765 666655543 44567888989999998888888888887765 9999999999999999999
Q ss_pred HHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCce
Q 015759 237 LRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV 316 (401)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~ 316 (401)
|+....+|..+||+.++..|..+..+|++.+.-||+||+++++|+|+|++++||+||+|.++++|+||+||+||.|+.|.
T Consensus 350 L~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 350 LNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred HhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Q 015759 317 AISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLE 355 (401)
Q Consensus 317 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (401)
+++++.|.+..+++.+++.--..++-.+...+++....+
T Consensus 430 alL~l~p~El~Flr~LK~lpl~~~e~~~~~~~~v~~~~~ 468 (543)
T KOG0342|consen 430 ALLLLAPWELGFLRYLKKLPLEEFEFPPLKPEDVQSQLE 468 (543)
T ss_pred EEEEeChhHHHHHHHHhhCCCcccCCCCCCHHHHHHHHH
Confidence 999999999999999984333333333344444444333
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.2e-58 Score=441.77 Aligned_cols=340 Identities=39% Similarity=0.578 Sum_probs=309.6
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~ 80 (401)
.||.+++|+|+|++||||||||++|++|+++.+.... ..+++||++||++|+.|+++.+..+.... ++.+..+
T Consensus 36 ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~------~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~ 109 (629)
T PRK11634 36 CIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVAL 109 (629)
T ss_pred HHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc------CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEE
Confidence 4688899999999999999999999999998875432 45689999999999999999999887654 7899999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
+|+.+...+...+..+++|+|+||+++.+++.... +.++++.+||+||||++++.+|...+..++..+|...|+++|||
T Consensus 110 ~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~-l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSA 188 (629)
T PRK11634 110 YGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT-LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSA 188 (629)
T ss_pred ECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEc
Confidence 99998888887888889999999999999987754 57889999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhc
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL 240 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 240 (401)
|++..+..+...++.++..+...........+.+.+..+....+...+..++......++||||+++..++.+++.|.+.
T Consensus 189 T~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~ 268 (629)
T PRK11634 189 TMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN 268 (629)
T ss_pred cCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC
Confidence 99999999999999999888777666566677788888888788888888888877889999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 015759 241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
++.+..+|++|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||.|.+++.|+||+||+||.|+.|.++++
T Consensus 269 g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 269 GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHhCCCCCCCCCCHH
Q 015759 321 VNQYELEWYLQIEKLIGKKLPEFPAEEE 348 (401)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (401)
+.+.+...+..+++.++..+++.+.+..
T Consensus 349 v~~~e~~~l~~ie~~~~~~i~~~~~p~~ 376 (629)
T PRK11634 349 VENRERRLLRNIERTMKLTIPEVELPNA 376 (629)
T ss_pred echHHHHHHHHHHHHhCCCcceecCCcH
Confidence 9999999999999999988877655443
No 11
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.7e-58 Score=441.58 Aligned_cols=346 Identities=38% Similarity=0.530 Sum_probs=308.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhh-cCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAEN-QRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~-~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
.||.+++|+|++++||||||||++|++|+++.++..... .......++||++||++|+.|+++.+.+++...++++..+
T Consensus 39 ~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l 118 (572)
T PRK04537 39 TLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALV 118 (572)
T ss_pred HHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEE
Confidence 478899999999999999999999999999988754321 1111357899999999999999999999998889999999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCC--CceEEEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--MRQTYLF 158 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~ 158 (401)
+|+.....+...+...++|+|+||++|++++.....+.+..+++|||||+|++++.+|...+..++..++. ..|+++|
T Consensus 119 ~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~ 198 (572)
T PRK04537 119 YGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLF 198 (572)
T ss_pred ECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEE
Confidence 99999888777777789999999999999987765567888999999999999999999999999999886 6799999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
|||++..+..+...++..+..+...........+.+.+.......+...+..++....+.++||||+++..++.+++.|.
T Consensus 199 SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~ 278 (572)
T PRK04537 199 SATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLE 278 (572)
T ss_pred eCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHH
Confidence 99999999999888888887776655555555677777777777778888888887788899999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEE
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAI 318 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i 318 (401)
+.++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|++++||+||.|.+..+|+||+||+||.|+.|.++
T Consensus 279 ~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai 358 (572)
T PRK04537 279 RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358 (572)
T ss_pred HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHhCCCCCCCCCCH
Q 015759 319 SLVNQYELEWYLQIEKLIGKKLPEFPAEE 347 (401)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (401)
+|+.+.+...+..+++.++..++..+...
T Consensus 359 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~~ 387 (572)
T PRK04537 359 SFACERYAMSLPDIEAYIEQKIPVEPVTA 387 (572)
T ss_pred EEecHHHHHHHHHHHHHHcCCCCccccCh
Confidence 99999999999999999888776555544
No 12
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.5e-58 Score=435.23 Aligned_cols=337 Identities=37% Similarity=0.539 Sum_probs=306.6
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~ 80 (401)
.+|.+++|+|++++||||||||++|++|+++.+.... ...++||++||++|+.|+.+.++.++... ++++..+
T Consensus 34 ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~------~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~ 107 (460)
T PRK11776 34 SLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR------FRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTL 107 (460)
T ss_pred HHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc------CCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 3678899999999999999999999999999875432 35679999999999999999999887644 6899999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
+|+.+...+...+..+++|+|+||+++.+++.... +.+.++++||+||+|++++.+|...+..++..++...|++++||
T Consensus 108 ~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~-~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SA 186 (460)
T PRK11776 108 CGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT-LDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSA 186 (460)
T ss_pred ECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC-ccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEe
Confidence 99999888888888889999999999999887644 57889999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhc
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL 240 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 240 (401)
|+++.+..+...++.+|..+...... ....+.+.+..++...+...+..++......++||||++++.++.+++.|.+.
T Consensus 187 T~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~ 265 (460)
T PRK11776 187 TYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ 265 (460)
T ss_pred cCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC
Confidence 99999999999999999888776554 34457788888888788888999888888899999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 015759 241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||.|.+...|+||+||+||.|+.|.++++
T Consensus 266 ~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 266 GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHhCCCCCCCCCC
Q 015759 321 VNQYELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
+.+.+...+..+++.++..++..+.+
T Consensus 346 ~~~~e~~~~~~i~~~~~~~~~~~~l~ 371 (460)
T PRK11776 346 VAPEEMQRANAIEDYLGRKLNWEPLP 371 (460)
T ss_pred EchhHHHHHHHHHHHhCCCCceecCC
Confidence 99999999999999999887766554
No 13
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1e-58 Score=410.19 Aligned_cols=337 Identities=36% Similarity=0.595 Sum_probs=316.6
Q ss_pred CccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhh--h-cCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceE
Q 015759 1 MLLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAE--N-QRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRC 77 (401)
Q Consensus 1 ~~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~--~-~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~ 77 (401)
+.+|..++.+|+|..|.||||||++|++|++.++.+.+. . .+...++.+++++|||+|++|+.++-.+|+..+++++
T Consensus 274 ~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~ 353 (673)
T KOG0333|consen 274 QAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRT 353 (673)
T ss_pred hhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceE
Confidence 457889999999999999999999999999999988663 2 3456899999999999999999999999999999999
Q ss_pred EEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCC-----
Q 015759 78 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM----- 152 (401)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~----- 152 (401)
..+.||.+..++...+..+|+|+|+||++|++.+.+.- +-++...++|+|||++|.+.+|.+.+..++..+|..
T Consensus 354 vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~-lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~ 432 (673)
T KOG0333|consen 354 VSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY-LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPD 432 (673)
T ss_pred EEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH-HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCC
Confidence 99999999999888888999999999999999988754 567889999999999999999999999999988721
Q ss_pred --------------------ceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHH
Q 015759 153 --------------------RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 212 (401)
Q Consensus 153 --------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 212 (401)
+|.+.||||+++.++.++..++.+|..+.......+.+.+.|.+..+..+.+...+..++
T Consensus 433 tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil 512 (673)
T KOG0333|consen 433 TDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEIL 512 (673)
T ss_pred ccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEe
Q 015759 213 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292 (401)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~ 292 (401)
......++|||+|+++.|+.+++.|.+.|+.++.+||+-++++|+..++.|++|..+|||||+++++|||+|++.+||||
T Consensus 513 ~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlViny 592 (673)
T KOG0333|consen 513 ESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINY 592 (673)
T ss_pred HhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeec
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCC
Q 015759 293 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK 338 (401)
Q Consensus 293 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 338 (401)
|.+.|.++|.|||||+||+|+.|.+++|+.+.+...++++.+.+..
T Consensus 593 dmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 593 DMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred chhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988888887753
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9.4e-58 Score=437.50 Aligned_cols=342 Identities=37% Similarity=0.528 Sum_probs=301.3
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.+|.+++|+|+|++||||||||++|++|++..+...... ....++.+|||+||++|+.|+.+.+.+++...++++..++
T Consensus 160 aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~-~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~ 238 (545)
T PTZ00110 160 GWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL-RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAY 238 (545)
T ss_pred HHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc-cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEe
Confidence 368899999999999999999999999999887653211 1124678999999999999999999999888889999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.+...+...+..+++|+|+||++|.+.+.... ..+..+++||+||||++++.+|...+..++..+++.+|++++|||
T Consensus 239 gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~-~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT 317 (545)
T PTZ00110 239 GGVPKRGQIYALRRGVEILIACPGRLIDFLESNV-TNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSAT 317 (545)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC-CChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeC
Confidence 9998887777788889999999999999887754 468899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcC-CCeEEEecccc-cccccceEEEEEcCCCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHH
Q 015759 162 MTKKVKKLQRACLK-NPVKIEAASKY-STVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALML 237 (401)
Q Consensus 162 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l 237 (401)
++..+..+...++. .+..+...... .....+.+.+..+....+...+..++... .+.++||||++++.|+.+++.|
T Consensus 318 ~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L 397 (545)
T PTZ00110 318 WPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKEL 397 (545)
T ss_pred CCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHH
Confidence 99999998888775 46666554332 33456677777777777777777777655 5789999999999999999999
Q ss_pred HhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceE
Q 015759 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA 317 (401)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 317 (401)
...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||.|.+.++|+||+||+||.|+.|.+
T Consensus 398 ~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a 477 (545)
T PTZ00110 398 RLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS 477 (545)
T ss_pred HHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHhCCCCCCCCC
Q 015759 318 ISLVNQYELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 318 i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
++|+++.+......+.+.+......+|.
T Consensus 478 i~~~~~~~~~~~~~l~~~l~~~~q~vp~ 505 (545)
T PTZ00110 478 YTFLTPDKYRLARDLVKVLREAKQPVPP 505 (545)
T ss_pred EEEECcchHHHHHHHHHHHHHccCCCCH
Confidence 9999999999989998888776666654
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-60 Score=392.77 Aligned_cols=337 Identities=32% Similarity=0.576 Sum_probs=319.5
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.||.++.|+|+++.|..|+|||.+|++|+++.+.... ...+++|++|||+||.|+...+.++++..++.+...+
T Consensus 115 sIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~------~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvtt 188 (459)
T KOG0326|consen 115 SIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK------NVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTT 188 (459)
T ss_pred ccceeecchhhhhhccCCCCCccceechhhhhcCccc------cceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEec
Confidence 4789999999999999999999999999999987655 6778999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
||++.......+.+..+++|+||++++++....- ..+++..++|+||||.+++..|.+.+..++..+|+.+|++++|||
T Consensus 189 GGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV-a~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 189 GGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV-ADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred CCcccccceeeecCceEEEEcCChhHHHHHhccc-ccchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecc
Confidence 9999988888888899999999999999887754 478899999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
+|-.+..+...++.+|..+..-.+. ....+.++|.++.+..|..-+..++....-.+.|||||+...++.+|..+.+.|
T Consensus 268 FP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelG 346 (459)
T KOG0326|consen 268 FPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELG 346 (459)
T ss_pred cchhHHHHHHHhccCcceeehhhhh-hhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhcc
Confidence 9999999999999999999877654 456788999999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
+.|..+|+.|.+++|..++..|++|.|+.||||+.+.+|||++.+++|||||.|.++++|+||+||.||+|..|.++.++
T Consensus 347 yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLi 426 (459)
T KOG0326|consen 347 YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLI 426 (459)
T ss_pred chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCC
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
.-+|...+.++++.++..+.++|..
T Consensus 427 tyedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 427 TYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ehhhhhhHHHHHHHhccccccCCCc
Confidence 9999999999999999999988864
No 16
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.8e-57 Score=426.99 Aligned_cols=339 Identities=36% Similarity=0.554 Sum_probs=300.8
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.+|++++|+|++++||||+|||++|++|+++.+...... .....++||++||++|+.|+.+.+..+....++++..++
T Consensus 31 ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~--~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~ 108 (434)
T PRK11192 31 AIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR--KSGPPRILILTPTRELAMQVADQARELAKHTHLDIATIT 108 (434)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc--CCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 367888999999999999999999999999988753221 113568999999999999999999999888899999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.....+...+...++|+|+||++|++++.... +.+..+++||+||||++++.+|...+..+...++...|+++||||
T Consensus 109 gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~-~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT 187 (434)
T PRK11192 109 GGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN-FDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSAT 187 (434)
T ss_pred CCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-cCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEee
Confidence 9999888877777789999999999999887754 578899999999999999999999999999999888999999999
Q ss_pred Cch-HHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHh
Q 015759 162 MTK-KVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN 239 (401)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~ 239 (401)
++. .+..+....+.++..+...........+.+.+..++. ..+...+..++......++||||++++.++.+++.|..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~ 267 (434)
T PRK11192 188 LEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRK 267 (434)
T ss_pred cCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHh
Confidence 975 5777888888888888776665555667777766654 45667777777766788999999999999999999999
Q ss_pred cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 015759 240 LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAIS 319 (401)
Q Consensus 240 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~ 319 (401)
.++.+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+||.|.+...|+||+||+||.|..|.+++
T Consensus 268 ~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 268 AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccHHHHHHHHHHhCCCCCCC
Q 015759 320 LVNQYELEWYLQIEKLIGKKLPEF 343 (401)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~ 343 (401)
++...|...+..+++++...+...
T Consensus 348 l~~~~d~~~~~~i~~~~~~~~~~~ 371 (434)
T PRK11192 348 LVEAHDHLLLGKIERYIEEPLKAR 371 (434)
T ss_pred EecHHHHHHHHHHHHHHhcccccc
Confidence 999999999999998887766543
No 17
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-57 Score=403.96 Aligned_cols=347 Identities=37% Similarity=0.567 Sum_probs=312.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.||+++.|+|++..|.||||||++|++|+++.+.+..=... .|--+||++|||+||.|+++.+.+.+....+....+.
T Consensus 99 ~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~--DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLii 176 (758)
T KOG0343|consen 99 TIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPT--DGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLII 176 (758)
T ss_pred hcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCC--CCceeEEecchHHHHHHHHHHHHHHhhccccccceee
Confidence 47999999999999999999999999999999987432211 5666999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
||.........+ ++.+|+||||++|+.|+.....+...++.++|+||||++++++|...+..|++.+|+.+|+++||||
T Consensus 177 GG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSAT 255 (758)
T KOG0343|consen 177 GGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSAT 255 (758)
T ss_pred cCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecc
Confidence 998866555544 4599999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEec--ccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHh
Q 015759 162 MTKKVKKLQRACLKNPVKIEAA--SKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN 239 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~ 239 (401)
.+..+..+++..+.+|..+.+- .....+.++.|.|..++...|...+..++..+...+.|||++|++++..+++.+++
T Consensus 256 qt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~r 335 (758)
T KOG0343|consen 256 QTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCR 335 (758)
T ss_pred cchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHh
Confidence 9999999999999999877655 33567789999999999999999999999999999999999999999999999988
Q ss_pred c--CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceE
Q 015759 240 L--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA 317 (401)
Q Consensus 240 ~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 317 (401)
. |+.+..+||.|++..|..++..|...+.-||+||+++++|+|+|.+++||++|-|.++++|+||+||+.|.+..|.+
T Consensus 336 lrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~s 415 (758)
T KOG0343|consen 336 LRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGES 415 (758)
T ss_pred cCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCce
Confidence 6 78899999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEEecccc-HHHHHHHHHHhCCCCCCCCCCHHHHHH
Q 015759 318 ISLVNQYE-LEWYLQIEKLIGKKLPEFPAEEEEVLL 352 (401)
Q Consensus 318 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (401)
++++.|.+ ..++..+++.. .++.+...+++....
T Consensus 416 ll~L~psEeE~~l~~Lq~k~-I~i~~i~i~~~k~~~ 450 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKK-IPIKEIKIDPEKLTS 450 (758)
T ss_pred EEEEcchhHHHHHHHHHHcC-CCHHhhccCHHHhhh
Confidence 99999987 55555555543 666666665555443
No 18
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-57 Score=395.12 Aligned_cols=331 Identities=39% Similarity=0.587 Sum_probs=297.1
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC-CCceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG-ISLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~-~~i~~~~~~ 81 (401)
||++++++|+++.|+||||||++|++|+++.+.+....... ....+||++|||+|+.|+.+.+..|... .++++..+.
T Consensus 37 IPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~-~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~v 115 (567)
T KOG0345|consen 37 IPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP-GQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLV 115 (567)
T ss_pred hHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc-cceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEe
Confidence 78999999999999999999999999999998654432221 1346899999999999999999988766 589999999
Q ss_pred cCCChHHHHHHhC-CCCCEEEECchHHHHHHhc-CCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 82 GGVDMMQQTLALG-KRPHIVVATPGRLMDHLTN-TKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~-~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
||.+.......+. .+++|+|+||++|.+.+.. ...+++.++.++|+||||++++.+|...+..|++.+|+.+.+=+||
T Consensus 116 GG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFS 195 (567)
T KOG0345|consen 116 GGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFS 195 (567)
T ss_pred cCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccccccccc
Confidence 9988877766654 4688999999999999887 3445677999999999999999999999999999999999999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEeccccc--ccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYS--TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l 237 (401)
||....+..+....+.+|..+.+..... .+..+...|..++...|...+..++......++|||++|+..++..+..+
T Consensus 196 ATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~ 275 (567)
T KOG0345|consen 196 ATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLF 275 (567)
T ss_pred chhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHH
Confidence 9999999999999999999998887665 66778889999999999999999999999999999999999999999998
Q ss_pred Hhc--CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCc
Q 015759 238 RNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG 315 (401)
Q Consensus 238 ~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g 315 (401)
... ...++.+||.|.+..|..+++.|.+....+|+|||++++|+|+|++++||+||+|.++..|+||+||++|.|+.|
T Consensus 276 ~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G 355 (567)
T KOG0345|consen 276 SRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREG 355 (567)
T ss_pred HHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCcc
Confidence 876 568899999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHH
Q 015759 316 VAISLVNQYELEWYLQIEK 334 (401)
Q Consensus 316 ~~i~~~~~~~~~~~~~~~~ 334 (401)
.+++|+.+.+..+...+.-
T Consensus 356 ~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 356 NAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred ceEEEecccHHHHHHHHHh
Confidence 9999999977666555443
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.1e-56 Score=425.98 Aligned_cols=342 Identities=32% Similarity=0.497 Sum_probs=298.7
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhc-CCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ-RTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~-~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
.+|.+++|+|++++||||||||++|++|++..+....... ....++++||++||++|+.|+.+.++.+....++++..+
T Consensus 151 aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~ 230 (518)
T PLN00206 151 AIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALV 230 (518)
T ss_pred HHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 4688899999999999999999999999999887532111 112567899999999999999999999988888899999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
.||.....+...+..+++|+|+||++|.+.+.... ..+.++++||+||||++++.+|...+..++..++ .+|++++||
T Consensus 231 ~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~-~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SA 308 (518)
T PLN00206 231 VGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD-IELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSA 308 (518)
T ss_pred ECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC-ccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEe
Confidence 99988877777777889999999999999888753 5789999999999999999999999999998886 478999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcC--CCCEEEEecchHHHHHHHHHHH
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVS--ASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
|+++.+..+...+..++..+...........+.+.+..++...+...+..++.... ..++||||+++..++.+++.|.
T Consensus 309 Tl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~ 388 (518)
T PLN00206 309 TVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAIT 388 (518)
T ss_pred eCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHh
Confidence 99999999999999888888877666666667777777877777777777776543 4689999999999999999997
Q ss_pred h-cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceE
Q 015759 239 N-LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA 317 (401)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 317 (401)
. .++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.+..+|+||+||+||.|..|.+
T Consensus 389 ~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~a 468 (518)
T PLN00206 389 VVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTA 468 (518)
T ss_pred hccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEE
Confidence 5 589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHhCCCCCCCCC
Q 015759 318 ISLVNQYELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 318 i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
++|+++++...+..+.+.+...-..+|.
T Consensus 469 i~f~~~~~~~~~~~l~~~l~~~~~~vp~ 496 (518)
T PLN00206 469 IVFVNEEDRNLFPELVALLKSSGAAIPR 496 (518)
T ss_pred EEEEchhHHHHHHHHHHHHHHcCCCCCH
Confidence 9999999888888888877654444443
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-55 Score=419.17 Aligned_cols=349 Identities=36% Similarity=0.543 Sum_probs=303.5
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCC-CCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRT-VPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
.++++++|+|+|+.+|||||||++|++|++..+......... ....++||++||++|+.|+.+.++.+....++.+..+
T Consensus 117 ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~ 196 (475)
T PRK01297 117 VLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTF 196 (475)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEE
Confidence 467889999999999999999999999999998865321111 1257899999999999999999999988888999999
Q ss_pred EcCCChHHHHHHh-CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCC--CceEEE
Q 015759 81 VGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--MRQTYL 157 (401)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~ 157 (401)
+|+.+...+...+ ...++|+|+||++|++++..+. ..+.++++|||||+|++.+.++...+..++..++. ..|+++
T Consensus 197 ~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~-~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~ 275 (475)
T PRK01297 197 VGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE-VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLL 275 (475)
T ss_pred EccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-cccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEE
Confidence 9998776655554 3468999999999998877654 46889999999999999999999999999988864 469999
Q ss_pred EeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHH
Q 015759 158 FSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237 (401)
Q Consensus 158 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l 237 (401)
+|||++.++..+...+..++..+...........+.+.+..+....+...+..++......++||||++++.++.+++.|
T Consensus 276 ~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L 355 (475)
T PRK01297 276 FSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERL 355 (475)
T ss_pred EEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999888887776655555566677777777777778888888777789999999999999999999
Q ss_pred HhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceE
Q 015759 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA 317 (401)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 317 (401)
.+.++.+..+||+++.++|.++++.|++|++++||||+++++|+|+|++++||+|+.|.+..+|+||+||+||.|++|.+
T Consensus 356 ~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~ 435 (475)
T PRK01297 356 VKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS 435 (475)
T ss_pred HHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHhCCCCCCCCCCHHHHHH
Q 015759 318 ISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLL 352 (401)
Q Consensus 318 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (401)
++++.++|...+..+++.++..++ ....+.+++.
T Consensus 436 i~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~ 469 (475)
T PRK01297 436 ISFAGEDDAFQLPEIEELLGRKIS-CEMPPAELLK 469 (475)
T ss_pred EEEecHHHHHHHHHHHHHhCCCCc-ccCCcHHHhh
Confidence 999999999999999999998875 3333444433
No 21
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-56 Score=395.64 Aligned_cols=343 Identities=37% Similarity=0.529 Sum_probs=310.6
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcC----CCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQR----TVPAFFACVLSPTRELAIQISEQFEALGSGISLRC 77 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~----~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~ 77 (401)
-||.+..|++++++|+||+|||.+|++|++.+++....... ....++++|++|||+|+.|++++.+++....++++
T Consensus 104 sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~ 183 (482)
T KOG0335|consen 104 SIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKS 183 (482)
T ss_pred ccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccccee
Confidence 47889999999999999999999999999999998643221 11368999999999999999999999998889999
Q ss_pred EEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCC----C
Q 015759 78 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPR----M 152 (401)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~----~ 152 (401)
...+|+.+.-.+......+|+|+|+||++|.+.+.... +.+++.+++|+||||+|++ .+|.+.+..++..... .
T Consensus 184 ~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~-i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~ 262 (482)
T KOG0335|consen 184 VVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK-ISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNN 262 (482)
T ss_pred eeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce-eehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccc
Confidence 99999999888888889999999999999999887755 6899999999999999999 9999999999988753 6
Q ss_pred ceEEEEeecCchHHHHHHHHhcCC-CeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcC----CC-----CEEE
Q 015759 153 RQTYLFSATMTKKVKKLQRACLKN-PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVS----AS-----STMV 222 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~-----~~iv 222 (401)
+|.++||||++.++..+...++.+ ...+.+........++.+...++....|...+..++.... .+ +++|
T Consensus 263 ~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlv 342 (482)
T KOG0335|consen 263 RQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLV 342 (482)
T ss_pred eeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEE
Confidence 799999999999999998888886 7888888888889999999999999999999999887443 23 7999
Q ss_pred EecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHH
Q 015759 223 FTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302 (401)
Q Consensus 223 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~ 302 (401)
||.+++.|..++..|...++.+..+||+-++.+|.+.++.|+.|.+.+||||+++++|+|+|++++||+||.|.+..+|+
T Consensus 343 FvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~Yv 422 (482)
T KOG0335|consen 343 FVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYV 422 (482)
T ss_pred EeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCC
Q 015759 303 HRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 303 Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
||+||+||.|+.|.+..|++..+....+.+.+.+...-.++|.
T Consensus 423 HRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~ 465 (482)
T KOG0335|consen 423 HRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQ 465 (482)
T ss_pred HhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcH
Confidence 9999999999999999999988888877777776554444443
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-56 Score=394.16 Aligned_cols=333 Identities=37% Similarity=0.563 Sum_probs=292.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~~ 81 (401)
||.+++|+|++|.++||||||++|++|+++.+......-....|.-+||++|||+|+.|+++.++++...+ .|-...+.
T Consensus 168 IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lm 247 (708)
T KOG0348|consen 168 IPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLM 247 (708)
T ss_pred hhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceee
Confidence 78999999999999999999999999999999875543334478889999999999999999999987654 67788899
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-----------
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP----------- 150 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~----------- 150 (401)
||.....+...++.+++|+|+||++|.+++.+...+.++.++.+|+||+|++++.+|...+..|++.+.
T Consensus 248 GGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~ 327 (708)
T KOG0348|consen 248 GGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPK 327 (708)
T ss_pred cccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhccccc
Confidence 999988888899999999999999999999999989999999999999999999999999999988762
Q ss_pred --CCceEEEEeecCchHHHHHHHHhcCCCeEEEeccc-------------------------ccccccceEEEEEcCCCC
Q 015759 151 --RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK-------------------------YSTVDTLKQQYRFVPAKY 203 (401)
Q Consensus 151 --~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 203 (401)
...|.+++|||+++.+..+....+.+|..+..... ...++.+.+.|..+|.+.
T Consensus 328 lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL 407 (708)
T KOG0348|consen 328 LPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL 407 (708)
T ss_pred ccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCch
Confidence 23578999999999999999999999988772110 223345678888899888
Q ss_pred hhHHHHHHHHh----cCCCCEEEEecchHHHHHHHHHHHhc----------------------CCceEeecCCCCHHHHH
Q 015759 204 KDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNL----------------------GQRAIPISGHMSQSKRL 257 (401)
Q Consensus 204 ~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~ 257 (401)
+...+..++.. ....++|||+++.+.+++-+..|... +..+..+||.|++++|.
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 87776666653 35678999999999999988888653 34588999999999999
Q ss_pred HHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHH
Q 015759 258 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKL 335 (401)
Q Consensus 258 ~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~ 335 (401)
.+++.|...+..||+|||++++|+|+|++++||+||+|.++++|+||+||+.|.|.+|.+++|..|.+.+++..++..
T Consensus 488 s~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 488 SVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999989999999999999999999999999999999999999999999999999999999999988777654
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-55 Score=379.62 Aligned_cols=359 Identities=33% Similarity=0.457 Sum_probs=313.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC--CceEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI--SLRCAV 79 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~--~i~~~~ 79 (401)
.||.++.|+|++..|.||||||.+|++|+++.+++.........++.++|++||++|++|++..+.++.... .++...
T Consensus 49 aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~n 128 (569)
T KOG0346|consen 49 AIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAIN 128 (569)
T ss_pred ccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 489999999999999999999999999999999987766566688999999999999999999998875433 366666
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
+.++.+.......+.+.++|+|+||++++.++..+....+..+.++|+||||.++..+|.+.+..+.+.+|+..|.++||
T Consensus 129 l~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmS 208 (569)
T KOG0346|consen 129 LASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMS 208 (569)
T ss_pred hhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchhhheeeh
Confidence 66666666666778888999999999999999987756788999999999999999999999999999999999999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccc-cccccceEEEEEcCCCChhHHHHHHHH-hcCCCCEEEEecchHHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPAKYKDCYLVYILT-EVSASSTMVFTRTCDATRLLALML 237 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~l 237 (401)
||+++++..+...++.+|..+...... ...+.+.|++..|.+..|...+..+++ ..-.++.|||+|+...+..+.-.|
T Consensus 209 ATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfL 288 (569)
T KOG0346|consen 209 ATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFL 288 (569)
T ss_pred hhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHH
Confidence 999999999999999999998776554 345778899999998888877777776 346889999999999999999999
Q ss_pred HhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-----------------------------------CCCCCC
Q 015759 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----------------------------------ASRGLD 282 (401)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-----------------------------------~~~Gid 282 (401)
.+.|+..++++|.|+.+.|..+++.|++|-.+++|||+. .++|||
T Consensus 289 eqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGID 368 (569)
T KOG0346|consen 289 EQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGID 368 (569)
T ss_pred HHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhcccc
Confidence 999999999999999999999999999999999999991 678999
Q ss_pred CCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCC--------CCCCCCCCHHHHHHHH
Q 015759 283 IPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK--------KLPEFPAEEEEVLLLL 354 (401)
Q Consensus 283 ~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 354 (401)
+.++++|+|||.|.++..|+||+||++|.+++|.+++|+.|.+..-...++..+.. .+.+++...+++....
T Consensus 369 F~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~~~~qilqPY~f~~eevesfr 448 (569)
T KOG0346|consen 369 FHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQEGRQILQPYQFRMEEVESFR 448 (569)
T ss_pred chheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhhcCccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999887755555544422 4666777777777654
Q ss_pred HHHHHH
Q 015759 355 ERVTEA 360 (401)
Q Consensus 355 ~~~~~~ 360 (401)
-+..++
T Consensus 449 yR~eD~ 454 (569)
T KOG0346|consen 449 YRAEDA 454 (569)
T ss_pred HHHHHH
Confidence 444443
No 24
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.8e-54 Score=402.74 Aligned_cols=339 Identities=32% Similarity=0.510 Sum_probs=298.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.++.+++|+|++++||||||||++|++|++..+.... .+.++||++|+++|+.|+.+.+..++...++.+..+.
T Consensus 58 ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~------~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~ 131 (401)
T PTZ00424 58 GIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL------NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACV 131 (401)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC------CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEE
Confidence 3677899999999999999999999999998764322 4667999999999999999999998877788888889
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.........+..+++|+|+||+++.+.+.... +.++++++||+||+|++.+.++...+..++..+++..|++++|||
T Consensus 132 g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 210 (401)
T PTZ00424 132 GGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH-LRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSAT 210 (401)
T ss_pred CCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC-cccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEec
Confidence 9888777777777778999999999998887644 568899999999999999988988899999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhc
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL 240 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 240 (401)
+++....+...+...+..+...........+.+.+..++. ..+...+..++......++||||++++.++.+++.|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~ 290 (401)
T PTZ00424 211 MPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER 290 (401)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC
Confidence 9999888888888888776655544445556666665554 345566666666667789999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 015759 241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++++
T Consensus 291 ~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 291 DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHhCCCCCCCCCCH
Q 015759 321 VNQYELEWYLQIEKLIGKKLPEFPAEE 347 (401)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (401)
+.+.+.+.+..+++.++..+++.+.+.
T Consensus 371 ~~~~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 371 VTPDDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred EcHHHHHHHHHHHHHHCCcccccCcch
Confidence 999999999999999999888776653
No 25
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-53 Score=371.90 Aligned_cols=348 Identities=35% Similarity=0.501 Sum_probs=315.1
Q ss_pred CccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 1 MLLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 1 ~~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
+.||..+.|++++-.|.||||||.+|+.|++..++..++-.+ ..++..||+|||++|+.|++.++++|++.++++++.+
T Consensus 252 qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~-g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ 330 (731)
T KOG0339|consen 252 QALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKP-GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAV 330 (731)
T ss_pred cccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcC-CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEe
Confidence 468899999999999999999999999999999987665432 2678899999999999999999999999999999999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
+||.+.+++...+..++.||||||++|++++.... ..+.+..++|+||+++|.+.+|.+++..|...+.+.+|+++|||
T Consensus 331 ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa-tn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsa 409 (731)
T KOG0339|consen 331 YGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA-TNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSA 409 (731)
T ss_pred ecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc-ccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeec
Confidence 99999999999999999999999999999988754 58899999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCC-hhHHHHHHHH-hcCCCCEEEEecchHHHHHHHHHHH
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDCYLVYILT-EVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
|++..++.+.+.++.+|+.+...........+.|.+..++... |...+...|. -...+++|+|+.-...++.++..|+
T Consensus 410 Tf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lk 489 (731)
T KOG0339|consen 410 TFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLK 489 (731)
T ss_pred cchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhc
Confidence 9999999999999999999988877778888888888887754 4444444443 3467899999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEE
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAI 318 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i 318 (401)
-.++++..+||++.+.+|.+++..|+++.+.|||+|+...+|+|++.+..||+||.-.+.+.|.||+||+||.|.+|.++
T Consensus 490 lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvay 569 (731)
T KOG0339|consen 490 LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAY 569 (731)
T ss_pred cccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccHHHHHHHHHHhCCCCCCCCCCHHHH
Q 015759 319 SLVNQYELEWYLQIEKLIGKKLPEFPAEEEEV 350 (401)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (401)
+++.+.|..+.-.+-..+.-.-..+|.+.-++
T Consensus 570 TlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 570 TLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred EEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 99999999888888877766555565554333
No 26
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.6e-54 Score=369.12 Aligned_cols=340 Identities=35% Similarity=0.495 Sum_probs=302.6
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
|.+++|+|++.+|.||+|||++||+|.+..+...+....+..++.+|+++||++|+.|+.-+..++..+ +++..++.|+
T Consensus 252 PI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygg 330 (629)
T KOG0336|consen 252 PILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGG 330 (629)
T ss_pred ceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecC
Confidence 678999999999999999999999999988887776666668899999999999999999888887644 6888889999
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
.+...+...+..+.+|+++||++|.++.... ...+..+.++|+||||+|++.+|.+++..++-.+.+.+|+++.|||+|
T Consensus 331 gnR~eqie~lkrgveiiiatPgrlndL~~~n-~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP 409 (629)
T KOG0336|consen 331 GNRNEQIEDLKRGVEIIIATPGRLNDLQMDN-VINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWP 409 (629)
T ss_pred CCchhHHHHHhcCceEEeeCCchHhhhhhcC-eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCc
Confidence 9999999999999999999999999976654 368899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCeEEEecccc-cccccceEEEEEcCCCChhHHHHHHHHhc-CCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 164 KKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
+.+..+...++.+|..+.+...+ .....+.+.+....++.+...+..++... ...++||||..+..|+.|+.-|.-.|
T Consensus 410 ~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g 489 (629)
T KOG0336|consen 410 EGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG 489 (629)
T ss_pred hHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc
Confidence 99999999999999988777654 34456667664334455666666665544 67899999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
+.+-.+||+-++.+|+..++.|++|+++|||+|+.+++|+|+++++||+|||+|.+.++|+||+||+||.|+.|.+++++
T Consensus 490 i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~l 569 (629)
T KOG0336|consen 490 ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFL 569 (629)
T ss_pred cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCC
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
..+|......+.+.+...-.++|.
T Consensus 570 t~~D~~~a~eLI~ILe~aeQevPd 593 (629)
T KOG0336|consen 570 TRNDWSMAEELIQILERAEQEVPD 593 (629)
T ss_pred ehhhHHHHHHHHHHHHHhhhhCcH
Confidence 999998888888877765555543
No 27
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=357.29 Aligned_cols=334 Identities=30% Similarity=0.464 Sum_probs=295.9
Q ss_pred ccccc--CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 3 LWFCD--AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 3 l~~~~--~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
||+++ ..+|+|.++..|+|||.+|.+.++.++.... ..++++.++||++||.|..+.+.+++...++...+.
T Consensus 121 LPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~------~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~ya 194 (477)
T KOG0332|consen 121 LPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV------VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYA 194 (477)
T ss_pred cchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc------cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEE
Confidence 56555 4599999999999999999999998876544 678899999999999999999999998888887776
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEe
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
..+.....- -.-..+|+|+||+.+.++....+.+.+..+.++|+|||+.|++ .+|.+.-..|...+|+..|++++|
T Consensus 195 ir~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFS 271 (477)
T KOG0332|consen 195 IRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFS 271 (477)
T ss_pred ecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeee
Confidence 655421110 0113579999999999999886667889999999999999988 679999999999999999999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC-ChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
||+...+..++.....++..+....+.....++.+.|..|+.. .|...+..+.....-++.||||.|++.|.+++..+.
T Consensus 272 ATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~ 351 (477)
T KOG0332|consen 272 ATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMR 351 (477)
T ss_pred chhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHH
Confidence 9999999999999999999999999888999999999999864 577778887777788999999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC------ChhHHHHHhhhcccCC
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIHRVGRTARAG 312 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~------s~~~~~Q~~GR~~R~g 312 (401)
+.|+.|..+||+|...+|..++.+|+.|..+|||+|+++++|||++.+++|||||+|. +++.|+||+||+||+|
T Consensus 352 ~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG 431 (477)
T KOG0332|consen 352 AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG 431 (477)
T ss_pred hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999994 6789999999999999
Q ss_pred CCceEEEEeccc-cHHHHHHHHHHhCCCCCCCCC
Q 015759 313 RTGVAISLVNQY-ELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 313 ~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (401)
+.|.++.+++.. +.+.+..|+++++..+.....
T Consensus 432 kkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~ 465 (477)
T KOG0332|consen 432 KKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDP 465 (477)
T ss_pred ccceEEEeecccCcHHHHHHHHHHHhhcceecCC
Confidence 999999999875 667888999999877665544
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-53 Score=377.43 Aligned_cols=370 Identities=38% Similarity=0.595 Sum_probs=313.7
Q ss_pred CccccccCC-ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhc-----CCCCce--eEEEEcCcHHHHHHHHHHHHHhccC
Q 015759 1 MLLWFCDAG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQ-----RTVPAF--FACVLSPTRELAIQISEQFEALGSG 72 (401)
Q Consensus 1 ~~l~~~~~g-~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~-----~~~~~~--~~lil~P~~~L~~q~~~~l~~~~~~ 72 (401)
++||++..| .|++..|.||||||++|-+|+++.+.+..+.. ....++ -.||++|||+||.|+...+......
T Consensus 210 l~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~ 289 (731)
T KOG0347|consen 210 LVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEK 289 (731)
T ss_pred hcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccc
Confidence 468888888 99999999999999999999999666532211 111333 4999999999999999999999998
Q ss_pred CCceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCC--CCCCccEEEEcchhhccccccHHHHHHHHHhCC
Q 015759 73 ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGF--SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 150 (401)
Q Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 150 (401)
.++++..++||.....+.+.+...++|||+||++|+..+.....+ .+.++.++|+||+|+|...++...+..++..+.
T Consensus 290 t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~ 369 (731)
T KOG0347|consen 290 TQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLN 369 (731)
T ss_pred cCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998876542 578899999999999999999999999988775
Q ss_pred -----CCceEEEEeecCchH---------------------HHHHHHHh--cCCCeEEEecccccccccceEEEEEcCCC
Q 015759 151 -----RMRQTYLFSATMTKK---------------------VKKLQRAC--LKNPVKIEAASKYSTVDTLKQQYRFVPAK 202 (401)
Q Consensus 151 -----~~~~~i~~SAT~~~~---------------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (401)
..+|.+.||||++-. ++.++... ...|..+...........+......|+..
T Consensus 370 e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~ 449 (731)
T KOG0347|consen 370 EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPL 449 (731)
T ss_pred hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCcc
Confidence 446999999997421 22233322 24566666666666666777777888888
Q ss_pred ChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCC
Q 015759 203 YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 282 (401)
Q Consensus 203 ~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid 282 (401)
.|..++++++..+ ++++|||||++..+..++-+|+..++....+|..|.+..|-..+++|++....|||||+++++|+|
T Consensus 450 eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLD 528 (731)
T KOG0347|consen 450 EKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLD 528 (731)
T ss_pred ccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCC
Confidence 8888888777654 577999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHHHH
Q 015759 283 IPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK--KLPEFPAEEEEVLLLLERVTEA 360 (401)
Q Consensus 283 ~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 360 (401)
+|++.|||||-.|.+.+.|+||.||+.|++..|..++++.|.+...+..+.+-+.. .++-+|+...-...+.+++.-|
T Consensus 529 Ip~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA 608 (731)
T KOG0347|consen 529 IPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLA 608 (731)
T ss_pred CCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888864 4566788655555667788888
Q ss_pred hhhhhhhhhhc
Q 015759 361 KRISQMTIKDS 371 (401)
Q Consensus 361 ~~~~~~~~~~~ 371 (401)
.++....++..
T Consensus 609 ~ei~~~e~k~~ 619 (731)
T KOG0347|consen 609 REIDKLEIKSK 619 (731)
T ss_pred HHHHHhhhhhh
Confidence 88777776654
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.2e-53 Score=363.63 Aligned_cols=340 Identities=36% Similarity=0.570 Sum_probs=301.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhh--cCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC------C
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAEN--QRTVPAFFACVLSPTRELAIQISEQFEALGSGI------S 74 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~--~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~------~ 74 (401)
||.+++|+|.|-.|-||||||++|.+|++...+..... .....++-.||+||+|+|+.|.++.+..+...+ .
T Consensus 201 lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 201 LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 68899999999999999999999999999988875432 123367889999999999999999888775332 5
Q ss_pred ceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCce
Q 015759 75 LRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQ 154 (401)
Q Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 154 (401)
++...+.||.+...+....+.+.+|+|+||++|.+.+.... .++.-.+++.+||||+|.+.+|...+..+++.+...+|
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~-~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQ 359 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI-MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQ 359 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh-ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhh
Confidence 78889999999999999999999999999999999988754 57777889999999999999999999999999999999
Q ss_pred EEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHH
Q 015759 155 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLA 234 (401)
Q Consensus 155 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~ 234 (401)
+++||||+|..++.+....+..|..+++.......-++.+...++..+.|..++...+.. ...+++|||..+..++.+.
T Consensus 360 TLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQK-T~PpVLIFaEkK~DVD~Ih 438 (610)
T KOG0341|consen 360 TLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQK-TSPPVLIFAEKKADVDDIH 438 (610)
T ss_pred eeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhcc-CCCceEEEeccccChHHHH
Confidence 999999999999999999999999999998887777777777777788887777776654 4568999999999999999
Q ss_pred HHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCC
Q 015759 235 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT 314 (401)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~ 314 (401)
++|--.|..++.+||+-++++|...++.|+.|+.+|||+|++++.|+|+|++.+|||||.|...+.|+||+||+||.|+.
T Consensus 439 EYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~ 518 (610)
T KOG0341|consen 439 EYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKT 518 (610)
T ss_pred HHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccc-cHHHHHHHHHHhCCCCCCCC
Q 015759 315 GVAISLVNQY-ELEWYLQIEKLIGKKLPEFP 344 (401)
Q Consensus 315 g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~ 344 (401)
|.+.+|++.. +...+.++...+...-.++|
T Consensus 519 GiATTfINK~~~esvLlDLK~LL~EakQ~vP 549 (610)
T KOG0341|consen 519 GIATTFINKNQEESVLLDLKHLLQEAKQEVP 549 (610)
T ss_pred ceeeeeecccchHHHHHHHHHHHHHhhccCC
Confidence 9999999875 55566666665544333333
No 30
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-51 Score=362.26 Aligned_cols=327 Identities=36% Similarity=0.581 Sum_probs=281.9
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..++|+.|.||||||||++|.+|+++.+.+.+- ..-+++|++|+++|+.|+++.+..+....++.++.+.|..+.
T Consensus 181 ~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl 255 (620)
T KOG0350|consen 181 SRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSL 255 (620)
T ss_pred CCCCceEEecCCCCCceeeehhHHHHHHccCCc-----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccch
Confidence 358999999999999999999999998876533 568899999999999999999999999999999999998888
Q ss_pred HHHHHHhCC-CC----CEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-----------
Q 015759 87 MQQTLALGK-RP----HIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP----------- 150 (401)
Q Consensus 87 ~~~~~~~~~-~~----~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~----------- 150 (401)
..+...+.. .+ ||+|+||++|.+|+.+.+.+.+.+++++||||||++++..|...+..+...+.
T Consensus 256 ~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~ni 335 (620)
T KOG0350|consen 256 EDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNI 335 (620)
T ss_pred HHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhh
Confidence 777766654 33 89999999999999998889999999999999999998766655544433221
Q ss_pred -----------------------CCceEEEEeecCchHHHHHHHHhcCCCeEEEec----ccccccccceEEEEEcCCCC
Q 015759 151 -----------------------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAA----SKYSTVDTLKQQYRFVPAKY 203 (401)
Q Consensus 151 -----------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 203 (401)
+..+.+.+|||+...-..+...-+..|....+. ..+..+..+.+.+..+....
T Consensus 336 i~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~ 415 (620)
T KOG0350|consen 336 IRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF 415 (620)
T ss_pred hhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccccc
Confidence 112468889998887778888888888666555 34556667777777778888
Q ss_pred hhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH----hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCC
Q 015759 204 KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR----NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279 (401)
Q Consensus 204 ~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~ 279 (401)
+...+..++......++|+|+++.+.+.+++..|+ .....+..+.|.++...|.+.++.|..|++.+|||++++++
T Consensus 416 kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laR 495 (620)
T KOG0350|consen 416 KPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALAR 495 (620)
T ss_pred chHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhc
Confidence 89999999999999999999999999999999887 33566777999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCC
Q 015759 280 GLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGK 338 (401)
Q Consensus 280 Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~ 338 (401)
|+|+.+++.|||||+|.+...|+||+||++|+|+.|.|+++++..+...+.++-+..+.
T Consensus 496 GiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 496 GIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred CCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999988888777776654
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=5.9e-50 Score=394.18 Aligned_cols=344 Identities=20% Similarity=0.235 Sum_probs=261.3
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.++++++|+|+++.+|||||||++|++|+++.+... .+.++||++||++|+.|+.+.+++++ ..++++..+.
T Consensus 44 ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-------~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~ 115 (742)
T TIGR03817 44 AAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-------PRATALYLAPTKALAADQLRAVRELT-LRGVRPATYD 115 (742)
T ss_pred HHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-------CCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEe
Confidence 367889999999999999999999999999998753 45689999999999999999999987 4478888888
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcC-CC--CCCCCccEEEEcchhhccccccHHHHHHHHH-------hCCC
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT-KG--FSLGTLKYLVLDEADRLLNDDFEKSLDEILN-------VIPR 151 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~-~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~-------~~~~ 151 (401)
|+.+... ...+...++|+|+||+++...+... .. ..++++++||+||+|.+.+ .|+..+..++. ..+.
T Consensus 116 Gdt~~~~-r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~g~ 193 (742)
T TIGR03817 116 GDTPTEE-RRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARYGA 193 (742)
T ss_pred CCCCHHH-HHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhcCC
Confidence 8877543 3445566999999999997543321 11 1367899999999998865 46655444433 3456
Q ss_pred CceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-----------------CChhHHHHHHHHh
Q 015759 152 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-----------------KYKDCYLVYILTE 214 (401)
Q Consensus 152 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~l~~ 214 (401)
.+|++++|||+++..+ ....++..+..+ +...... ........+.+. ..+...+..++.
T Consensus 194 ~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~- 269 (742)
T TIGR03817 194 SPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSP-RGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA- 269 (742)
T ss_pred CCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCC-cCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH-
Confidence 6899999999988755 455666666443 2222211 122222222221 012223333333
Q ss_pred cCCCCEEEEecchHHHHHHHHHHHhc--------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCC
Q 015759 215 VSASSTMVFTRTCDATRLLALMLRNL--------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 286 (401)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~ 286 (401)
.+.++||||+|++.++.++..|++. +..+..+||++++++|.+++++|++|+.++||||+++++|||++++
T Consensus 270 -~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~v 348 (742)
T TIGR03817 270 -EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGL 348 (742)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccc
Confidence 3689999999999999999998764 5678899999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhHHHHHhhhcccCCCCceEEEEec--cccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Q 015759 287 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN--QYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTEA 360 (401)
Q Consensus 287 ~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (401)
++||+++.|.+..+|+||+||+||.|+.|.++++.. +.|...+..+++.++..++....+.+....+..++..+
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~~~~n~~il~~hl~~a 424 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVFDPDNPYVLGPHLCCA 424 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccceeCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999886 45666777788888887776544433333333333333
No 32
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-50 Score=383.98 Aligned_cols=342 Identities=34% Similarity=0.534 Sum_probs=310.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
-||++..|+|||.+|-||||||++|++|++..+...+... .+.++.++|++||++|+.|+.+++++|...++++++..+
T Consensus 395 AiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~-~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vy 473 (997)
T KOG0334|consen 395 AIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLE-EGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVY 473 (997)
T ss_pred hcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChh-hCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEec
Confidence 3799999999999999999999999999996665543322 335999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC--CCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG--FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
|+.....+...++.++.|+||||+++++.+..... ..+....++|+||+|+|.+.+|.++...|+..+++.+|++++|
T Consensus 474 gg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfS 553 (997)
T KOG0334|consen 474 GGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFS 553 (997)
T ss_pred CCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhh
Confidence 99999999999999999999999999998865443 2445556999999999999999999999999999999999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcC-CCChhHHHHHHHHhc-CCCCEEEEecchHHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALML 237 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~l 237 (401)
||++..+..+....+..|+.+.+.........+.+.+..++ +..|...+..++... ...++||||...+.|..+.+.|
T Consensus 554 atfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 554 ATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred hhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHH
Confidence 99999999999999999999888887777888999999998 677888888888755 5789999999999999999999
Q ss_pred HhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceE
Q 015759 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA 317 (401)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~ 317 (401)
.+.|+.+..+||+-+..+|..+++.|+++.+.+||+|+.+++|+|++.+..|||||.|...++|+||.||+||.|..|.+
T Consensus 634 ~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~A 713 (997)
T KOG0334|consen 634 QKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAA 713 (997)
T ss_pred HhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccHHHHHHHHHHhCCCCCCCC
Q 015759 318 ISLVNQYELEWYLQIEKLIGKKLPEFP 344 (401)
Q Consensus 318 i~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (401)
++|+.+++..+...|.+.+...-...|
T Consensus 714 vtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 714 VTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred EEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 999999999999999999943333333
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-49 Score=340.90 Aligned_cols=338 Identities=35% Similarity=0.556 Sum_probs=312.8
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+.++.+|.|+++++++|+|||.+|++++++.+.-.. ...++++++|+++|+.|..+....++...+.++..+.|
T Consensus 57 I~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~------ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~ig 130 (397)
T KOG0327|consen 57 ILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSV------KETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIG 130 (397)
T ss_pred ccccccCCceeEeeeccccchhhhHHHHHhhcCcch------HHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecC
Confidence 456789999999999999999999999998874332 56679999999999999999999999888999999999
Q ss_pred CCChHHHHHHh-CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 83 GVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 83 ~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
+.....+...+ ...++|+++||+++.+.+... .+....+.++|+||++.++..+|.+.+..+...+|+..|++++|||
T Consensus 131 g~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT 209 (397)
T KOG0327|consen 131 GTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSAT 209 (397)
T ss_pred cccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeeccc
Confidence 98887555444 346899999999999988876 5677889999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
.+.++....+.+..+|..+.+.........+.+.|..+..+.|...+..+.. .-.+.++|||+++.+..+...|..++
T Consensus 210 ~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~ 287 (397)
T KOG0327|consen 210 MPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHG 287 (397)
T ss_pred CcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCC
Confidence 9999999999999999999998888888899999999998888888888887 67889999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
..+..+|++|.+.+|..++..|+.|..+|||+|+.+++|+|+..+..|++|+.|...+.|.||+||+||.|.+|.++.++
T Consensus 288 ~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v 367 (397)
T KOG0327|consen 288 FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFV 367 (397)
T ss_pred ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCCHHH
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAEEEE 349 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (401)
...+...+++++++++..++++|....+
T Consensus 368 ~~~d~~~lk~ie~~y~~~i~e~p~~~~~ 395 (397)
T KOG0327|consen 368 TEEDVRDLKDIEKFYNTPIEELPSNFAD 395 (397)
T ss_pred hHhhHHHHHhHHHhcCCcceecccchhh
Confidence 9999999999999999999999987544
No 34
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-49 Score=340.81 Aligned_cols=333 Identities=38% Similarity=0.601 Sum_probs=311.7
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.++.|++++..+-||||||.+|++|+++.+..... .+.++++++||++|+.|..+..+.++...+++.+.+.|
T Consensus 52 ipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~-----~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~g 126 (529)
T KOG0337|consen 52 IPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQ-----TGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVG 126 (529)
T ss_pred ccceeeccccceeeecCCcchhhHHHHHHHHHhhccc-----cccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcc
Confidence 6899999999999999999999999999999986542 67889999999999999999999999999999999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.+..++...+..++|||++||+++........ +.++.+.+|||||++++...+|.+.+..++..+|..+|.++||||+
T Consensus 127 gD~~eeqf~~l~~npDii~ATpgr~~h~~vem~-l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl 205 (529)
T KOG0337|consen 127 GDSIEEQFILLNENPDIIIATPGRLLHLGVEMT-LTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL 205 (529)
T ss_pred cchHHHHHHHhccCCCEEEecCceeeeeehhee-ccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC
Confidence 999999999998889999999999987665544 6789999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhc-CCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
|..+..+.+..+.+|..+....+....+.++..+..+....|..++..++... ...+++|||.+...++.+...|...|
T Consensus 206 p~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g 285 (529)
T KOG0337|consen 206 PRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG 285 (529)
T ss_pred chhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcC
Confidence 99999999999999999988777777778888899999999999999988865 45789999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
+.+..++|.|++..|...+..|..++..+||.|+.+.+|+|+|..+.|||||.|.+...|+||+||+.|.|..|.+|.++
T Consensus 286 ~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V 365 (529)
T KOG0337|consen 286 GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLV 365 (529)
T ss_pred CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCC
Q 015759 322 NQYELEWYLQIEKLIGKKLP 341 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~ 341 (401)
.+++..++.++..+++.++.
T Consensus 366 ~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 366 ASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred ecccchhhhhhhhhcCCcee
Confidence 99999999999999887654
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-47 Score=363.31 Aligned_cols=311 Identities=19% Similarity=0.233 Sum_probs=239.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.++++++|+|+++.+|||+|||++|++|++. .+..+||++|+++|+.|+.+.+..+ ++....+.
T Consensus 19 ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------------~~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~ 82 (470)
T TIGR00614 19 VINAVLLGRDCFVVMPTGGGKSLCYQLPALC------------SDGITLVISPLISLMEDQVLQLKAS----GIPATFLN 82 (470)
T ss_pred HHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------------cCCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEe
Confidence 4678899999999999999999999999875 3446899999999999999998865 47777777
Q ss_pred cCCChHHHHH----HhCCCCCEEEECchHHHHHHhcCCCC-CCCCccEEEEcchhhccccc--cHHHHHH---HHHhCCC
Q 015759 82 GGVDMMQQTL----ALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDD--FEKSLDE---ILNVIPR 151 (401)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~--~~~~~~~---i~~~~~~ 151 (401)
++........ ......+|+++||+++.........+ ...++++|||||||++.+++ |++.+.. +...+|
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~- 161 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFP- 161 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcC-
Confidence 7766543222 12345899999999975322110111 45678999999999988754 5665544 344454
Q ss_pred CceEEEEeecCchHHHHHHHHhc--CCCeEEEecccccccccceEEEEEcCCC-ChhHHHHHHHH-hcCCCCEEEEecch
Q 015759 152 MRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILT-EVSASSTMVFTRTC 227 (401)
Q Consensus 152 ~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~-~~~~~~~ivf~~~~ 227 (401)
..+++++|||+++.+.......+ ..+..+..... ..++ .+...+.. .....+...+. ...+..+||||+++
T Consensus 162 ~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl--~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~ 236 (470)
T TIGR00614 162 NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNL--YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSR 236 (470)
T ss_pred CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCc--EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcH
Confidence 45699999999988765544443 33433322211 1222 22222222 22333444444 45666779999999
Q ss_pred HHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhh
Q 015759 228 DATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGR 307 (401)
Q Consensus 228 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR 307 (401)
+.++.+++.|++.|+.+..+|++|+..+|..+++.|.+|+++|||||+++++|+|+|++++||++++|.|.+.|+||+||
T Consensus 237 ~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GR 316 (470)
T TIGR00614 237 KKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGR 316 (470)
T ss_pred HHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEeccccHHHHHHHHH
Q 015759 308 TARAGRTGVAISLVNQYELEWYLQIEK 334 (401)
Q Consensus 308 ~~R~g~~g~~i~~~~~~~~~~~~~~~~ 334 (401)
+||.|..|.+++++++.|...+..+..
T Consensus 317 aGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 317 AGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred cCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999988777666654
No 36
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.9e-47 Score=372.40 Aligned_cols=311 Identities=21% Similarity=0.253 Sum_probs=240.1
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+|++++.|+|+++.+|||+|||++|++|++. ....+|||+|+++|+.++...+... ++....+.
T Consensus 468 aI~aiL~GrDVLVimPTGSGKSLcYQLPAL~------------~~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~ 531 (1195)
T PLN03137 468 IINATMSGYDVFVLMPTGGGKSLTYQLPALI------------CPGITLVISPLVSLIQDQIMNLLQA----NIPAASLS 531 (1195)
T ss_pred HHHHHHcCCCEEEEcCCCccHHHHHHHHHHH------------cCCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEE
Confidence 5788999999999999999999999999985 3346999999999998777776653 58888899
Q ss_pred cCCChHHHHHHhC------CCCCEEEECchHHHH--HHhc-CCCC-CCCCccEEEEcchhhccccc--cHHHHHHH---H
Q 015759 82 GGVDMMQQTLALG------KRPHIVVATPGRLMD--HLTN-TKGF-SLGTLKYLVLDEADRLLNDD--FEKSLDEI---L 146 (401)
Q Consensus 82 ~~~~~~~~~~~~~------~~~~Iii~T~~~l~~--~~~~-~~~~-~~~~~~~iIiDE~h~~~~~~--~~~~~~~i---~ 146 (401)
++.....+...+. ...+|+++||+++.. .+.. ...+ ....+.+|||||||++..++ |++.+..+ .
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 9887665543332 468999999999852 1111 1111 23457899999999998865 77766653 3
Q ss_pred HhCCCCceEEEEeecCchHHHHHHHHhcCC--CeEEEecccccccccceEEEEEcCCCCh-hHHHHHHHHh-cCCCCEEE
Q 015759 147 NVIPRMRQTYLFSATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQQYRFVPAKYK-DCYLVYILTE-VSASSTMV 222 (401)
Q Consensus 147 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~-~~~~~~iv 222 (401)
..++ ..+++++|||+++.+...+...+.. +..+... ....+ ..|..++...+ ...+..++.. ..+.+.||
T Consensus 612 ~~fp-~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S---f~RpN--L~y~Vv~k~kk~le~L~~~I~~~~~~esgII 685 (1195)
T PLN03137 612 QKFP-NIPVLALTATATASVKEDVVQALGLVNCVVFRQS---FNRPN--LWYSVVPKTKKCLEDIDKFIKENHFDECGII 685 (1195)
T ss_pred HhCC-CCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc---cCccc--eEEEEeccchhHHHHHHHHHHhcccCCCcee
Confidence 4444 4678999999998887755554432 2222111 11112 23433443322 2334444443 34678999
Q ss_pred EecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHH
Q 015759 223 FTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302 (401)
Q Consensus 223 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~ 302 (401)
||++++.++.+++.|...|+.+..+|++|++.+|..++++|..|+++|||||+++++|||+|++++||+|+.|.|.+.|+
T Consensus 686 YC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYy 765 (1195)
T PLN03137 686 YCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYH 765 (1195)
T ss_pred EeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCceEEEEeccccHHHHHHHHH
Q 015759 303 HRVGRTARAGRTGVAISLVNQYELEWYLQIEK 334 (401)
Q Consensus 303 Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~ 334 (401)
|++||+||.|..|.|+++++..|...+..+..
T Consensus 766 QriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 766 QECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred hhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999998877666555543
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.8e-48 Score=350.71 Aligned_cols=316 Identities=28% Similarity=0.478 Sum_probs=289.0
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~~ 81 (401)
||++..|-|+||++..|+|||++|...+++.+.... ...+.+||+|||+++-|+.+.+.+++..+ +.++.++.
T Consensus 56 IP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~------~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 56 IPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS------SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred hhhhhcccceEEEecCCCCceEEEEeeeehhcCccc------CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 789999999999999999999999988888765433 67789999999999999999999998744 89999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEee
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
||+........+. .++|+|+||+++..++..+- +..++++++|+||||.+++ ..|...+..|++.+|..+|++.+||
T Consensus 130 GGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~-~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SA 207 (980)
T KOG4284|consen 130 GGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGA-MNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSA 207 (980)
T ss_pred cCchhhhhhhhhh-hceEEecCchHHHHHHHhcC-CCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEec
Confidence 9998877666665 48999999999999877754 6899999999999999998 7899999999999999999999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC--------ChhHHHHHHHHhcCCCCEEEEecchHHHHH
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK--------YKDCYLVYILTEVSASSTMVFTRTCDATRL 232 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~ 232 (401)
|.+..+.+.+..++.+|..+.........-.+++++...+.. .|...+..++...+-.+.||||+....|+-
T Consensus 208 TYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~ 287 (980)
T KOG4284|consen 208 TYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEP 287 (980)
T ss_pred cCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhH
Confidence 999999999999999999999988888888999988877753 366667778888899999999999999999
Q ss_pred HHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCC
Q 015759 233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG 312 (401)
Q Consensus 233 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g 312 (401)
++..|+..|+.|..+.|.|++.+|..+++.+++-.++|||+|+.-++|||-++++.|||.|+|.+.++|.||+||+||+|
T Consensus 288 ~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG 367 (980)
T KOG4284|consen 288 IATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG 367 (980)
T ss_pred HHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccccH
Q 015759 313 RTGVAISLVNQYEL 326 (401)
Q Consensus 313 ~~g~~i~~~~~~~~ 326 (401)
..|.+++++.....
T Consensus 368 ~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 368 AHGAAVTLLEDERE 381 (980)
T ss_pred ccceeEEEeccchh
Confidence 99999999976543
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=8e-46 Score=360.07 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=239.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++++++|+|+++.+|||+|||++|++|++. ....+||++|+++|+.|+.+.++.. ++....+.
T Consensus 33 ai~~il~g~dvlv~apTGsGKTl~y~lpal~------------~~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~ 96 (607)
T PRK11057 33 IIDAVLSGRDCLVVMPTGGGKSLCYQIPALV------------LDGLTLVVSPLISLMKDQVDQLLAN----GVAAACLN 96 (607)
T ss_pred HHHHHHcCCCEEEEcCCCchHHHHHHHHHHH------------cCCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEc
Confidence 4678899999999999999999999999885 3346899999999999999999875 46777777
Q ss_pred cCCChHHHHH----HhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc--cHHHHHH---HHHhCCCC
Q 015759 82 GGVDMMQQTL----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD--FEKSLDE---ILNVIPRM 152 (401)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~---i~~~~~~~ 152 (401)
++........ ......+++++||+++....... .+...++++|||||||++..++ |++.+.. +...+| .
T Consensus 97 s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~-~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p-~ 174 (607)
T PRK11057 97 STQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE-HLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFP-T 174 (607)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH-HHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCC-C
Confidence 7765543322 12345789999999986321111 1234578999999999988754 5555443 444444 4
Q ss_pred ceEEEEeecCchHHHHHHHHhc--CCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHH
Q 015759 153 RQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDAT 230 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~ 230 (401)
.+++++|||+++.........+ .++...... .. ..++ .+..+........+...+....+.++||||++++.+
T Consensus 175 ~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~-~~--r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~ 249 (607)
T PRK11057 175 LPFMALTATADDTTRQDIVRLLGLNDPLIQISS-FD--RPNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV 249 (607)
T ss_pred CcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-CC--CCcc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 6799999999887655433332 334332211 11 1122 233334444445566666667788999999999999
Q ss_pred HHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhccc
Q 015759 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTAR 310 (401)
Q Consensus 231 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R 310 (401)
+.+++.|++.|+.+..+|++|+..+|..+++.|..|+.+|||||+++++|+|+|++++||+|+.|.|.+.|+|++||+||
T Consensus 250 e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 250 EDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (607)
T ss_pred HHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccccHHHHHHH
Q 015759 311 AGRTGVAISLVNQYELEWYLQI 332 (401)
Q Consensus 311 ~g~~g~~i~~~~~~~~~~~~~~ 332 (401)
.|.+|.+++++++.|...+..+
T Consensus 330 ~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 330 DGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred CCCCceEEEEeCHHHHHHHHHH
Confidence 9999999999998886655544
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.5e-45 Score=357.92 Aligned_cols=308 Identities=20% Similarity=0.312 Sum_probs=244.2
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++++++|+|+++++|||+|||++|++|++. ....++|++|+++|+.|+.+.++.+ ++.+..++
T Consensus 21 ~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------------~~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~ 84 (591)
T TIGR01389 21 IISHVLDGRDVLVVMPTGGGKSLCYQVPALL------------LKGLTVVISPLISLMKDQVDQLRAA----GVAAAYLN 84 (591)
T ss_pred HHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------------cCCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEe
Confidence 4678899999999999999999999999874 3345899999999999999999875 47788888
Q ss_pred cCCChHHHHHH----hCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhcccc--ccHHHHHHH---HHhCCCC
Q 015759 82 GGVDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND--DFEKSLDEI---LNVIPRM 152 (401)
Q Consensus 82 ~~~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~--~~~~~~~~i---~~~~~~~ 152 (401)
++.+....... .....+|+++||+++....... .+...++++|||||||++..+ .|++.+..+ ...++..
T Consensus 85 s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~-~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~ 163 (591)
T TIGR01389 85 STLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN-MLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQV 163 (591)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH-HHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCC
Confidence 88766543322 2346899999999985432221 134567899999999998774 466665554 4445544
Q ss_pred ceEEEEeecCchHHHHHHHHhcC--CCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHH
Q 015759 153 RQTYLFSATMTKKVKKLQRACLK--NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDAT 230 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~ 230 (401)
+ ++++|||++..+.......+. .+..+... .......+.......+...+...+....+.++||||++++.+
T Consensus 164 ~-vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-----~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~ 237 (591)
T TIGR01389 164 P-RIALTATADAETRQDIRELLRLADANEFITS-----FDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKV 237 (591)
T ss_pred C-EEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-----CCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 4 999999999887766555543 33322211 111122344444455666677777776788999999999999
Q ss_pred HHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhccc
Q 015759 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTAR 310 (401)
Q Consensus 231 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R 310 (401)
+.+++.|...|+.+..+|++|+.++|..+++.|.+|+++|||||+++++|+|+|++++||+|++|.|.+.|.|++||+||
T Consensus 238 e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR 317 (591)
T TIGR01389 238 EELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGR 317 (591)
T ss_pred HHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccccHHHHHHH
Q 015759 311 AGRTGVAISLVNQYELEWYLQI 332 (401)
Q Consensus 311 ~g~~g~~i~~~~~~~~~~~~~~ 332 (401)
.|..+.+++++++.|...+..+
T Consensus 318 ~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 318 DGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred CCCCceEEEecCHHHHHHHHHH
Confidence 9999999999988775544443
No 40
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-45 Score=331.52 Aligned_cols=341 Identities=30% Similarity=0.427 Sum_probs=290.9
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc--cCCCceEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG--SGISLRCAV 79 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~--~~~~i~~~~ 79 (401)
.+|.++.+++++.|+|||+|||++|++|++..+..... .....+-+++|+.|+++|+.|++.++.++. ...+.+...
T Consensus 166 aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~-~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~ 244 (593)
T KOG0344|consen 166 AIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ-EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQ 244 (593)
T ss_pred hhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc-ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhh
Confidence 46788999999999999999999999999999886543 122267899999999999999999999998 555555555
Q ss_pred EEcCCChHH-HHHHhCCCCCEEEECchHHHHHHhcCC-CCCCCCccEEEEcchhhcccc-ccHHHHHHHHHhCCC-CceE
Q 015759 80 LVGGVDMMQ-QTLALGKRPHIVVATPGRLMDHLTNTK-GFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIPR-MRQT 155 (401)
Q Consensus 80 ~~~~~~~~~-~~~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~ 155 (401)
+........ ........++|+++||.++...+...+ ...+..+..+|+||+|.+... .|..++..+++.+.. ...+
T Consensus 245 ~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~ 324 (593)
T KOG0344|consen 245 FSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRV 324 (593)
T ss_pred cccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhh
Confidence 444322211 111222358899999999999887653 246889999999999999998 899999999888753 3457
Q ss_pred EEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHH
Q 015759 156 YLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLA 234 (401)
Q Consensus 156 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~ 234 (401)
-+||||.+.++++.+......+..+.+.........+.|...++-. ..|...+..++...-..+++||+.+.+.|..|.
T Consensus 325 a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~ 404 (593)
T KOG0344|consen 325 ALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLF 404 (593)
T ss_pred hhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHH
Confidence 7899999999999999999999999998888888888888877754 678888888888888999999999999999999
Q ss_pred HHH-HhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 235 LML-RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 235 ~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
..| .-.++.+.++||+.++.+|.+.+++|+.|+++|||||+.+++|+|+.+++.|||||.|.+...|+||+||+||.|+
T Consensus 405 ~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 405 EELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGR 484 (593)
T ss_pred HHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCC
Confidence 999 6678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccHHHHHHHHHHhCCCCCCC
Q 015759 314 TGVAISLVNQYELEWYLQIEKLIGKKLPEF 343 (401)
Q Consensus 314 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (401)
.|.+++|+.+.+...++.+.......--++
T Consensus 485 ~g~Aitfytd~d~~~ir~iae~~~~sG~ev 514 (593)
T KOG0344|consen 485 SGKAITFYTDQDMPRIRSIAEVMEQSGCEV 514 (593)
T ss_pred CcceEEEeccccchhhhhHHHHHHHcCCcc
Confidence 999999999999998888877765533333
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.6e-44 Score=359.38 Aligned_cols=318 Identities=23% Similarity=0.306 Sum_probs=229.7
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH-------h----c
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-------L----G 70 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~-------~----~ 70 (401)
.++.+++|+|++++||||||||++|++|++..+...........+.++||++|+++|+.|+++.+.+ + +
T Consensus 40 Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g 119 (876)
T PRK13767 40 AIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERG 119 (876)
T ss_pred HHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3577889999999999999999999999999887543221112467899999999999999886653 2 1
Q ss_pred cCC-CceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC-CCCCCccEEEEcchhhccccccHHHHH----H
Q 015759 71 SGI-SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLD----E 144 (401)
Q Consensus 71 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~----~ 144 (401)
... ++++..++|+.+...+...+...++|+|+||++|..++..... ..+.++++||+||+|.+.+..++..+. .
T Consensus 120 ~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~r 199 (876)
T PRK13767 120 EELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLER 199 (876)
T ss_pred CCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHH
Confidence 233 6789999999988777777777899999999999876654321 146789999999999998766655444 4
Q ss_pred HHHhCCCCceEEEEeecCchHHHHHHHHhcC-------CCeEEEecccccccccceEE-----EEEcCCCChhHHHHHHH
Q 015759 145 ILNVIPRMRQTYLFSATMTKKVKKLQRACLK-------NPVKIEAASKYSTVDTLKQQ-----YRFVPAKYKDCYLVYIL 212 (401)
Q Consensus 145 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l 212 (401)
+....++..|++++|||+++. ......... .+..+. .........+... ............+...+
T Consensus 200 L~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L 277 (876)
T PRK13767 200 LEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKVISPVDDLIHTPAEEISEALYETL 277 (876)
T ss_pred HHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEEeccCccccccccchhHHHHHHHH
Confidence 444444667999999998762 222222211 111111 1110000000000 00011111112222222
Q ss_pred Hh--cCCCCEEEEecchHHHHHHHHHHHhc------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCC
Q 015759 213 TE--VSASSTMVFTRTCDATRLLALMLRNL------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP 284 (401)
Q Consensus 213 ~~--~~~~~~ivf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~ 284 (401)
.. ..+.++||||||+..|+.++..|++. +..+..+||+++.++|..+++.|++|++++||||+.+++|||+|
T Consensus 278 ~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip 357 (876)
T PRK13767 278 HELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIG 357 (876)
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCC
Confidence 22 14678999999999999999999873 46799999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCChhHHHHHhhhcccCC-CCceEEEEe
Q 015759 285 SVDMVINYDIPTNSKDYIHRVGRTARAG-RTGVAISLV 321 (401)
Q Consensus 285 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~g-~~g~~i~~~ 321 (401)
++++||+++.|.++.+|+||+||+||.+ ..+.++++.
T Consensus 358 ~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 358 YIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999999874 333444333
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.9e-43 Score=349.94 Aligned_cols=291 Identities=20% Similarity=0.224 Sum_probs=228.5
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
++|++++||||+|||.+|+++++..+. .+.+++|++||++|+.|+++.++++....++++..++|+.+...
T Consensus 472 ~~d~Ll~adTGsGKT~val~a~l~al~---------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e 542 (926)
T TIGR00580 472 PMDRLVCGDVGFGKTEVAMRAAFKAVL---------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKE 542 (926)
T ss_pred cCCEEEECCCCccHHHHHHHHHHHHHH---------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHH
Confidence 379999999999999999999888775 45789999999999999999999988878899999988776544
Q ss_pred HHHH---hC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 89 QTLA---LG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 89 ~~~~---~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
.... +. ..++|+|+||..+ . ..+.+.+++++|+||+|++ +......+..++...|+++||||+.+
T Consensus 543 ~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpip 611 (926)
T TIGR00580 543 QNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIP 611 (926)
T ss_pred HHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCH
Confidence 3322 22 3589999999532 2 2346889999999999984 33344555666777899999999988
Q ss_pred HHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHH-hcCCCCEEEEecchHHHHHHHHHHHhc--C
Q 015759 165 KVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT-EVSASSTMVFTRTCDATRLLALMLRNL--G 241 (401)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~l~~~--~ 241 (401)
....+......++..+....... ..+...+..... ......+.. ...++++++||++++.++.+++.|++. +
T Consensus 612 rtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~---~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~ 686 (926)
T TIGR00580 612 RTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP---ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPE 686 (926)
T ss_pred HHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH---HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCC
Confidence 76666555555666555433221 123333222211 111112222 235789999999999999999999985 6
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC-ChhHHHHHhhhcccCCCCceEEEE
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
..+..+||+|+..+|.+++++|.+|+.+|||||+++++|+|+|++++||+++.|. +..+|.|++||+||.|+.|.|+++
T Consensus 687 ~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill 766 (926)
T TIGR00580 687 ARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLL 766 (926)
T ss_pred CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEE
Confidence 7899999999999999999999999999999999999999999999999999864 678999999999999999999999
Q ss_pred eccc
Q 015759 321 VNQY 324 (401)
Q Consensus 321 ~~~~ 324 (401)
+.+.
T Consensus 767 ~~~~ 770 (926)
T TIGR00580 767 YPHQ 770 (926)
T ss_pred ECCc
Confidence 8765
No 43
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.7e-42 Score=351.86 Aligned_cols=327 Identities=20% Similarity=0.222 Sum_probs=235.7
Q ss_pred EEcCCCcHHHHHHHHHHHHHHHHHhhhc----CCCCceeEEEEcCcHHHHHHHHHHHHHhc------------cCCCceE
Q 015759 14 GLAQTGSGKTGAFALPILQALLEIAENQ----RTVPAFFACVLSPTRELAIQISEQFEALG------------SGISLRC 77 (401)
Q Consensus 14 i~a~tGsGKT~~~~~~~~~~~~~~~~~~----~~~~~~~~lil~P~~~L~~q~~~~l~~~~------------~~~~i~~ 77 (401)
|+||||||||++|.+|++..++...... ....+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999998643110 11245789999999999999999887421 1247899
Q ss_pred EEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH----HHHHHHHHhCCCCc
Q 015759 78 AVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE----KSLDEILNVIPRMR 153 (401)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~----~~~~~i~~~~~~~~ 153 (401)
..++|+.+...+...+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+..++ ..+.++...+++..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888777777789999999999988776543336889999999999999875443 45666666677778
Q ss_pred eEEEEeecCchHHHHHHHHhcC-CCeEEEecccccccccceEEEEEcCCCC---------------------hhHHHHHH
Q 015759 154 QTYLFSATMTKKVKKLQRACLK-NPVKIEAASKYSTVDTLKQQYRFVPAKY---------------------KDCYLVYI 211 (401)
Q Consensus 154 ~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~ 211 (401)
|+|++|||+.+. +++.+.... .+..+... .......+.. +..+.... .......+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~~-~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVNP-PAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEECC-CCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 444443322 24444221 1111111211 11111100 00111122
Q ss_pred HHh-cCCCCEEEEecchHHHHHHHHHHHhcC---------------------------------CceEeecCCCCHHHHH
Q 015759 212 LTE-VSASSTMVFTRTCDATRLLALMLRNLG---------------------------------QRAIPISGHMSQSKRL 257 (401)
Q Consensus 212 l~~-~~~~~~ivf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~ 257 (401)
+.. ..+.++||||||++.|+.++..|++.. ..+..+||+++.++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 256889999999999999999997642 1256889999999999
Q ss_pred HHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCC-CCceEEEEeccccHHH----HHHH
Q 015759 258 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG-RTGVAISLVNQYELEW----YLQI 332 (401)
Q Consensus 258 ~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g-~~g~~i~~~~~~~~~~----~~~~ 332 (401)
.+++.|++|+.++||||+.++.|||++++++||+++.|.++.+|+||+||+||.. ..+.++ +.+.+... ..-+
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl--i~p~~r~dlle~~~~v 395 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL--FFPRTRRDLVDSAVIV 395 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE--EEeCcHHHHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999963 223444 33322222 2235
Q ss_pred HHHhCCCCCCCCC
Q 015759 333 EKLIGKKLPEFPA 345 (401)
Q Consensus 333 ~~~~~~~~~~~~~ 345 (401)
+.++...++....
T Consensus 396 e~~l~g~iE~~~~ 408 (1490)
T PRK09751 396 ECMFAGRLENLTP 408 (1490)
T ss_pred HHHhcCCCCccCC
Confidence 6667666665544
No 44
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.6e-42 Score=349.19 Aligned_cols=290 Identities=20% Similarity=0.183 Sum_probs=229.1
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
+|++++||||+|||.+|+.+++..+. .+.+++|++||++|+.|+++.+.+.....++++..++++.+...+
T Consensus 622 ~d~Ll~a~TGsGKT~val~aa~~~~~---------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~ 692 (1147)
T PRK10689 622 MDRLVCGDVGFGKTEVAMRAAFLAVE---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQ 692 (1147)
T ss_pred CCEEEEcCCCcCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHH
Confidence 89999999999999999887776543 567899999999999999999998776678888889888777665
Q ss_pred HHHhC----CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 90 TLALG----KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 90 ~~~~~----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
...+. ..++|+|+||+.+ . ..+.+.+++++|+||+|++.. .....+..++...|++++|||+++.
T Consensus 693 ~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrfG~-----~~~e~lk~l~~~~qvLl~SATpipr 761 (1147)
T PRK10689 693 TQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRFGV-----RHKERIKAMRADVDILTLTATPIPR 761 (1147)
T ss_pred HHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhcch-----hHHHHHHhcCCCCcEEEEcCCCCHH
Confidence 54332 3689999999744 2 224678899999999998622 2234456677888999999999888
Q ss_pred HHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHH-hcCCCCEEEEecchHHHHHHHHHHHhc--CC
Q 015759 166 VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT-EVSASSTMVFTRTCDATRLLALMLRNL--GQ 242 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~l~~~--~~ 242 (401)
...+....+.++..+....... ..+...+...... .....++. ...+++++||||+++.++.+++.|++. +.
T Consensus 762 tl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~---~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~ 836 (1147)
T PRK10689 762 TLNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSL---VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 (1147)
T ss_pred HHHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcH---HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 7777777777777775543321 2233333322211 11112222 225689999999999999999999987 77
Q ss_pred ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC-CChhHHHHHhhhcccCCCCceEEEEe
Q 015759 243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 243 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p-~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
.+..+||+|+..+|.+++.+|.+|+.+|||||+++++|+|+|++++||..+.. .+...|+|++||+||.|+.|.|++++
T Consensus 837 ~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 89999999999999999999999999999999999999999999999966553 56788999999999999999999988
Q ss_pred ccc
Q 015759 322 NQY 324 (401)
Q Consensus 322 ~~~ 324 (401)
.+.
T Consensus 917 ~~~ 919 (1147)
T PRK10689 917 PHP 919 (1147)
T ss_pred CCC
Confidence 654
No 45
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.1e-43 Score=323.93 Aligned_cols=312 Identities=23% Similarity=0.288 Sum_probs=244.6
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+|.++++|+|+++..|||.|||++|.+|++-. ...+|||+|..+|.+.+.+.++..+ +....+.
T Consensus 25 vI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------------~G~TLVVSPLiSLM~DQV~~l~~~G----i~A~~ln 88 (590)
T COG0514 25 IIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------------EGLTLVVSPLISLMKDQVDQLEAAG----IRAAYLN 88 (590)
T ss_pred HHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------------CCCEEEECchHHHHHHHHHHHHHcC----ceeehhh
Confidence 56788999999999999999999999998863 3368999999999999999999864 7888888
Q ss_pred cCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc--cHHHHHHHHH---hCCCC
Q 015759 82 GGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD--FEKSLDEILN---VIPRM 152 (401)
Q Consensus 82 ~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~i~~---~~~~~ 152 (401)
+..+..+....+ ....++++-+|+++..-.... .+.-..+.+++|||||+++.++ |++.+..+-. .+| .
T Consensus 89 S~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~-~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~-~ 166 (590)
T COG0514 89 STLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE-LLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP-N 166 (590)
T ss_pred cccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH-HHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCC-C
Confidence 876655544332 335799999999985432211 1234568899999999999875 8888776644 455 4
Q ss_pred ceEEEEeecCchHHHHHHHHhcCC--CeEEEecccccccccceEEEEEcCCCChhHHHHHHH--HhcCCCCEEEEecchH
Q 015759 153 RQTYLFSATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL--TEVSASSTMVFTRTCD 228 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~~ivf~~~~~ 228 (401)
.+++.+|||.++.+...+...+.- +..+. ...+. +++ .|..++...-...+..+. .....++.||||.|++
T Consensus 167 ~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~-~sfdR--pNi--~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk 241 (590)
T COG0514 167 PPVLALTATATPRVRDDIREQLGLQDANIFR-GSFDR--PNL--ALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRK 241 (590)
T ss_pred CCEEEEeCCCChHHHHHHHHHhcCCCcceEE-ecCCC--chh--hhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHH
Confidence 569999999998887766655532 22322 21111 122 222222211111111222 2556778999999999
Q ss_pred HHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhc
Q 015759 229 ATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRT 308 (401)
Q Consensus 229 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~ 308 (401)
.++.+++.|...|+.+..+|++|+.++|..+.++|..++..|+|||.++++|||-|++++||||+.|.|.+.|.|-+|||
T Consensus 242 ~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRA 321 (590)
T COG0514 242 KVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRA 321 (590)
T ss_pred hHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeccccHHHHHHHHHHh
Q 015759 309 ARAGRTGVAISLVNQYELEWYLQIEKLI 336 (401)
Q Consensus 309 ~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 336 (401)
||.|....|++++++.|..+...+.+..
T Consensus 322 GRDG~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 322 GRDGLPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred cCCCCcceEEEeeccccHHHHHHHHHhh
Confidence 9999999999999999987777666543
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.3e-42 Score=343.05 Aligned_cols=303 Identities=24% Similarity=0.290 Sum_probs=225.8
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|+|++++||||||||++|.++++..+. .+.++||++|+++|+.|+++.++.+.. .++++..++|+..
T Consensus 36 ~~~g~nvlv~APTGSGKTlia~lail~~l~---------~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~ 105 (737)
T PRK02362 36 LLDGKNLLAAIPTASGKTLIAELAMLKAIA---------RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYD 105 (737)
T ss_pred HhCCCcEEEECCCcchHHHHHHHHHHHHHh---------cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcC
Confidence 678999999999999999999999998875 456799999999999999999998753 4789999999865
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC---CCCceEEEEeecC
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI---PRMRQTYLFSATM 162 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~ 162 (401)
.... ....++|+|+||+++..++.+.. ..++++++||+||+|.+.+.+++..+..++..+ ++..|++++|||+
T Consensus 106 ~~~~---~l~~~~IiV~Tpek~~~llr~~~-~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl 181 (737)
T PRK02362 106 SRDE---WLGDNDIIVATSEKVDSLLRNGA-PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI 181 (737)
T ss_pred cccc---ccCCCCEEEECHHHHHHHHhcCh-hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC
Confidence 4332 22358999999999988777644 357889999999999998888888887776554 4567999999999
Q ss_pred chHHHHHHHHhcCC--------CeEEEecccccccccceEEEEEcCCCChhHHHHHHHHh-cCCCCEEEEecchHHHHHH
Q 015759 163 TKKVKKLQRACLKN--------PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE-VSASSTMVFTRTCDATRLL 233 (401)
Q Consensus 163 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ivf~~~~~~~~~l 233 (401)
++. ..+. .++.. |..+.......................+...+..+... ..++++||||++++.|+.+
T Consensus 182 ~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~ 259 (737)
T PRK02362 182 GNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGF 259 (737)
T ss_pred CCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHH
Confidence 752 2222 22221 11111000000000000000011111112222222221 2678999999999999998
Q ss_pred HHHHHhcC------------------------------------CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCC
Q 015759 234 ALMLRNLG------------------------------------QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 277 (401)
Q Consensus 234 ~~~l~~~~------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~ 277 (401)
+..|.... ..+..+|++|+..+|..+++.|++|.++|||||+++
T Consensus 260 a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tl 339 (737)
T PRK02362 260 AKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTL 339 (737)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhh
Confidence 88876431 368899999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEE----ec-----CCCChhHHHHHhhhcccCCCC--ceEEEEeccc
Q 015759 278 SRGLDIPSVDMVIN----YD-----IPTNSKDYIHRVGRTARAGRT--GVAISLVNQY 324 (401)
Q Consensus 278 ~~Gid~~~~~~vi~----~~-----~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~ 324 (401)
++|+|+|..++||. || .|.+..+|.||+|||||.|.+ |.+++++...
T Consensus 340 a~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 340 AAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred hhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 99999999999997 66 588999999999999999865 8898888664
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=326.52 Aligned_cols=314 Identities=24% Similarity=0.344 Sum_probs=245.8
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.+|.+.+|+|+++.||||||||+++.+|++..+.... ......+..+||++|.++|..++.+.++.++..+|+.+.+.|
T Consensus 30 a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~-~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRh 108 (814)
T COG1201 30 AIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG-KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRH 108 (814)
T ss_pred HHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc-CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceec
Confidence 3678899999999999999999999999999999863 222225788999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC-CCCCCccEEEEcchhhccccccHHH----HHHHHHhCCCCceEE
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKS----LDEILNVIPRMRQTY 156 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~----~~~i~~~~~~~~~~i 156 (401)
|+++...+.....+.+||+|+||++|.-.+...+. -.+.++.+||+||+|.+...-.+.+ +.++....+ ..|.+
T Consensus 109 GDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-~~qRI 187 (814)
T COG1201 109 GDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG-DFQRI 187 (814)
T ss_pred CCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-ccEEE
Confidence 99999999999999999999999999777765332 2578999999999999887555544 445555555 78999
Q ss_pred EEeecCchHHHHHHHHhcCC--CeEEEecccccccccceEEEE-EcCC--------CChhHHHHHHHHhcCCCCEEEEec
Q 015759 157 LFSATMTKKVKKLQRACLKN--PVKIEAASKYSTVDTLKQQYR-FVPA--------KYKDCYLVYILTEVSASSTMVFTR 225 (401)
Q Consensus 157 ~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~l~~~l~~~~~~~~ivf~~ 225 (401)
++|||..+. ....+..... +..+....... ....... ..+. ......+..+++. ...++||+|
T Consensus 188 GLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k---~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~N 261 (814)
T COG1201 188 GLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAK---KLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTN 261 (814)
T ss_pred eehhccCCH-HHHHHHhcCCCCceEEEEcccCC---cceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEe
Confidence 999998743 3333333332 23332222111 1111111 1111 1112223333333 348999999
Q ss_pred chHHHHHHHHHHHhcC-CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHH
Q 015759 226 TCDATRLLALMLRNLG-QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHR 304 (401)
Q Consensus 226 ~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~ 304 (401)
|+..|+.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+++|||+.++.|||+.+++.||+++.|.++..++||
T Consensus 262 TR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQR 341 (814)
T COG1201 262 TRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQR 341 (814)
T ss_pred ChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHh
Confidence 9999999999999987 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccC-CCCceEEEEecc
Q 015759 305 VGRTARA-GRTGVAISLVNQ 323 (401)
Q Consensus 305 ~GR~~R~-g~~g~~i~~~~~ 323 (401)
+||+|+. +...+++++...
T Consensus 342 iGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 342 IGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccccccccCCcccEEEEecC
Confidence 9999975 444666665544
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.3e-41 Score=331.14 Aligned_cols=289 Identities=20% Similarity=0.254 Sum_probs=218.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
.+.+++||||||||++|++|++..+. .+.+++|++||++|+.|+++.++++....++++..++|+.+....
T Consensus 283 ~~~Ll~~~TGSGKT~va~~~il~~~~---------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r 353 (681)
T PRK10917 283 MNRLLQGDVGSGKTVVAALAALAAIE---------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKER 353 (681)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHH---------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHH
Confidence 58999999999999999999988764 567899999999999999999999988888999999999886443
Q ss_pred HH---HhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 90 TL---ALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 90 ~~---~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
.. .+. ..++|+|+||+.+.+ ...+.+++++|+||+|++... ....+...+..+++++||||+.+.
T Consensus 354 ~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~~-----qr~~l~~~~~~~~iL~~SATp~pr 422 (681)
T PRK10917 354 REILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGVE-----QRLALREKGENPHVLVMTATPIPR 422 (681)
T ss_pred HHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhHH-----HHHHHHhcCCCCCEEEEeCCCCHH
Confidence 33 222 359999999987633 235778999999999986332 222333344457899999999776
Q ss_pred HHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHh-cCCCCEEEEecch--------HHHHHHHHH
Q 015759 166 VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE-VSASSTMVFTRTC--------DATRLLALM 236 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ivf~~~~--------~~~~~l~~~ 236 (401)
...+......+...+..... ....+... ..........+..+... ..+.+++|||+.+ ..++.+++.
T Consensus 423 tl~~~~~g~~~~s~i~~~p~--~r~~i~~~--~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~ 498 (681)
T PRK10917 423 TLAMTAYGDLDVSVIDELPP--GRKPITTV--VIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEE 498 (681)
T ss_pred HHHHHHcCCCceEEEecCCC--CCCCcEEE--EeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHH
Confidence 54443322222222221111 11122222 22233333333333332 3677999999954 456677888
Q ss_pred HHhc--CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC-ChhHHHHHhhhcccCCC
Q 015759 237 LRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAGR 313 (401)
Q Consensus 237 l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~g~ 313 (401)
|.+. +..+..+||+|+..+|.+++++|++|+.+|||||+++++|+|+|++++||+++.|. +...+.|++||+||.|.
T Consensus 499 L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 499 LQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred HHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC
Confidence 8776 46899999999999999999999999999999999999999999999999999986 67889999999999999
Q ss_pred CceEEEEec
Q 015759 314 TGVAISLVN 322 (401)
Q Consensus 314 ~g~~i~~~~ 322 (401)
.|.|++++.
T Consensus 579 ~g~~ill~~ 587 (681)
T PRK10917 579 QSYCVLLYK 587 (681)
T ss_pred ceEEEEEEC
Confidence 999999995
No 49
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.3e-41 Score=329.00 Aligned_cols=308 Identities=22% Similarity=0.219 Sum_probs=230.3
Q ss_pred ccccccCCc-cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-------
Q 015759 2 LLWFCDAGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI------- 73 (401)
Q Consensus 2 ~l~~~~~g~-~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~------- 73 (401)
++|.++.|+ ++++.+|||||||.++.++.+.. ... .....++++++|||+|+.|+++.+.+++..+
T Consensus 23 ~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~-----~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~ 96 (844)
T TIGR02621 23 LAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG-----AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVE 96 (844)
T ss_pred HHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc-----ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhh
Confidence 466778888 58888999999999766544422 111 1133455668899999999999999887644
Q ss_pred ----------------CceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCC---C-----C---CCCCccEEE
Q 015759 74 ----------------SLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK---G-----F---SLGTLKYLV 126 (401)
Q Consensus 74 ----------------~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~---~-----~---~~~~~~~iI 126 (401)
++++..++||.+...+...+..+++|||+|++.+........ . + .+.++.++|
T Consensus 97 ~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LV 176 (844)
T TIGR02621 97 AALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIV 176 (844)
T ss_pred hhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEE
Confidence 488999999999999999998899999999765533221100 0 0 257789999
Q ss_pred EcchhhccccccHHHHHHHHHhC--CCC---ceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC
Q 015759 127 LDEADRLLNDDFEKSLDEILNVI--PRM---RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA 201 (401)
Q Consensus 127 iDE~h~~~~~~~~~~~~~i~~~~--~~~---~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (401)
+|||| ++.+|...+..|++.+ ++. +|+++||||++.++..+...+..++..+...........+.+ +..++.
T Consensus 177 LDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q-~v~v~~ 253 (844)
T TIGR02621 177 HDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK-LVPPSD 253 (844)
T ss_pred Eehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEE-EEecCh
Confidence 99999 5778999999999964 332 599999999998888777777767766555443333334444 333343
Q ss_pred CChhHHHHHHH---HhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHH-----HHHhhccC----CC--
Q 015759 202 KYKDCYLVYIL---TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRL-----GALNKFKA----GE-- 267 (401)
Q Consensus 202 ~~~~~~l~~~l---~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----~~-- 267 (401)
..+...+...+ ....++++||||||++.|+.+++.|++.++ ..+||+|++.+|. .++++|++ +.
T Consensus 254 e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~ 331 (844)
T TIGR02621 254 EKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRA 331 (844)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccc
Confidence 33332222221 223567899999999999999999998876 8999999999999 78899987 43
Q ss_pred -----ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCC-ceEEEEecc
Q 015759 268 -----CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT-GVAISLVNQ 323 (401)
Q Consensus 268 -----~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~-g~~i~~~~~ 323 (401)
..|||||+++++|+|++. ++||++..| .+.|+||+||+||.|+. +..+.++..
T Consensus 332 ~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 332 RPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 679999999999999976 888887766 68999999999999975 444555533
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-40 Score=330.74 Aligned_cols=301 Identities=21% Similarity=0.253 Sum_probs=227.5
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
.+.+|+|+++++|||||||++|.+|++..+.. .+.++||++|+++|+.|+++.+..+. ..++++..++|+.
T Consensus 35 ~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--------~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~ 105 (720)
T PRK00254 35 GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--------EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDY 105 (720)
T ss_pred HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--------cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCC
Confidence 36889999999999999999999999988764 45689999999999999999998864 4578999999987
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
..... ....++|+|+||+++..++.... ..++++++||+||+|.+.+.+++..+..++..++...|++++|||+++
T Consensus 106 ~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~-~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n 181 (720)
T PRK00254 106 DSTDE---WLGKYDIIIATAEKFDSLLRHGS-SWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGN 181 (720)
T ss_pred CCchh---hhccCCEEEEcHHHHHHHHhCCc-hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCC
Confidence 65332 22458999999999988776543 357899999999999998888999999999999888999999999975
Q ss_pred HHHHHHHHhcCCCeEEEeccccccccc----ceEEEEEcCCCCh-------hHHHHHHHHhcCCCCEEEEecchHHHHHH
Q 015759 165 KVKKLQRACLKNPVKIEAASKYSTVDT----LKQQYRFVPAKYK-------DCYLVYILTEVSASSTMVFTRTCDATRLL 233 (401)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~l~~~l~~~~~~~~ivf~~~~~~~~~l 233 (401)
. ..+.. ++....... ...+... ..+.+...+.... ...+...+. .+.++||||+|++.|+.+
T Consensus 182 ~-~~la~-wl~~~~~~~---~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~ 254 (720)
T PRK00254 182 A-EELAE-WLNAELVVS---DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKE 254 (720)
T ss_pred H-HHHHH-HhCCccccC---CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHH
Confidence 3 33333 333221110 0011000 0011111111110 111222222 468999999999999887
Q ss_pred HHHHHhc---------------------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCC
Q 015759 234 ALMLRNL---------------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 280 (401)
Q Consensus 234 ~~~l~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~G 280 (401)
+..|... ...+..+|++|++++|..+++.|++|.++|||||+++++|
T Consensus 255 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~G 334 (720)
T PRK00254 255 ALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAG 334 (720)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhh
Confidence 7666321 2358899999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE-------ecCC-CChhHHHHHhhhcccCC--CCceEEEEecccc
Q 015759 281 LDIPSVDMVIN-------YDIP-TNSKDYIHRVGRTARAG--RTGVAISLVNQYE 325 (401)
Q Consensus 281 id~~~~~~vi~-------~~~p-~s~~~~~Q~~GR~~R~g--~~g~~i~~~~~~~ 325 (401)
+|+|..++||. ++.| .+..+|.||+||+||.| ..|.+++++...+
T Consensus 335 vnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 335 INLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999984 3333 35679999999999976 4589999987654
No 51
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-40 Score=292.95 Aligned_cols=308 Identities=25% Similarity=0.276 Sum_probs=228.8
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
.+|.+++.|||.|||.++++.+..++.. .+.++|+++||+-|+.|.++.+.++.....-.+..++|......
T Consensus 29 ~~NtLvvlPTGLGKT~IA~~V~~~~l~~--------~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~ 100 (542)
T COG1111 29 FKNTLVVLPTGLGKTFIAAMVIANRLRW--------FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEE 100 (542)
T ss_pred hcCeEEEecCCccHHHHHHHHHHHHHHh--------cCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHH
Confidence 4699999999999999988766656554 33389999999999999999999987766668889999888777
Q ss_pred HHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHHHH
Q 015759 89 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKK 168 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 168 (401)
+...|. ..+|+|+||+.+.+-+..+. +++.++.++||||||+.........+...+....+++.++++||||..+.+.
T Consensus 101 R~~~w~-~~kVfvaTPQvveNDl~~Gr-id~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ek 178 (542)
T COG1111 101 REELWA-KKKVFVATPQVVENDLKAGR-IDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEK 178 (542)
T ss_pred HHHHHh-hCCEEEeccHHHHhHHhcCc-cChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHH
Confidence 666665 48999999999999888765 6899999999999999877555555555555556667799999997543332
Q ss_pred ---HHHHhcCCCeEEEeccccccccc---ceEEEEEcC------------------------------------------
Q 015759 169 ---LQRACLKNPVKIEAASKYSTVDT---LKQQYRFVP------------------------------------------ 200 (401)
Q Consensus 169 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------------------------------------ 200 (401)
.++...-..+.+..+......+. ....+..++
T Consensus 179 I~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~ 258 (542)
T COG1111 179 IQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLE 258 (542)
T ss_pred HHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHH
Confidence 22222111111111110000000 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015759 201 -------------------------------------------------------------------------------- 200 (401)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (401)
T Consensus 259 ~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~ 338 (542)
T COG1111 259 LRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLI 338 (542)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHH
Confidence
Q ss_pred -------CCChhHHHHHHH----HhcCCCCEEEEecchHHHHHHHHHHHhcCCceE-ee--------cCCCCHHHHHHHH
Q 015759 201 -------AKYKDCYLVYIL----TEVSASSTMVFTRTCDATRLLALMLRNLGQRAI-PI--------SGHMSQSKRLGAL 260 (401)
Q Consensus 201 -------~~~~~~~l~~~l----~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~-~~--------~~~~~~~~r~~~~ 260 (401)
...|...+..++ ....+.++|||++.+.+|+.+.+.|.+.+..+. .+ ..+|++.++.+++
T Consensus 339 ~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI 418 (542)
T COG1111 339 RADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEII 418 (542)
T ss_pred HhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHH
Confidence 001111111122 223567899999999999999999999988774 22 2569999999999
Q ss_pred hhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHH
Q 015759 261 NKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 327 (401)
Q Consensus 261 ~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 327 (401)
+.|++|+++|||||+++++|+|+|.++.||+|++..|+-.++||.||+||. +.|.+++++...+.+
T Consensus 419 ~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtrd 484 (542)
T COG1111 419 DQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTRD 484 (542)
T ss_pred HHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCchH
Confidence 999999999999999999999999999999999999999999999999995 789999999887443
No 52
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.4e-40 Score=322.08 Aligned_cols=290 Identities=19% Similarity=0.247 Sum_probs=215.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
.+.+++||||||||++|+++++..+. .+.+++|++||++|+.|+++.++++....++++..++|+.+....
T Consensus 257 ~~~Ll~g~TGSGKT~va~l~il~~~~---------~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r 327 (630)
T TIGR00643 257 MNRLLQGDVGSGKTLVAALAMLAAIE---------AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRR 327 (630)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHHHH---------cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHH
Confidence 46899999999999999999888765 566899999999999999999999988888999999999876553
Q ss_pred HHH---h-CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC--CCceEEEEeecCc
Q 015759 90 TLA---L-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP--RMRQTYLFSATMT 163 (401)
Q Consensus 90 ~~~---~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~ 163 (401)
... + ...++|+|+||+.+.+ ...+.++++||+||+|++..... ..+..... ..+++++||||+.
T Consensus 328 ~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~qr----~~l~~~~~~~~~~~~l~~SATp~ 397 (630)
T TIGR00643 328 KELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVEQR----KKLREKGQGGFTPHVLVMSATPI 397 (630)
T ss_pred HHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHHHH----HHHHHhcccCCCCCEEEEeCCCC
Confidence 322 2 2358999999987743 24578899999999998643322 22222222 2567999999987
Q ss_pred hHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHh-cCCCCEEEEecch--------HHHHHHH
Q 015759 164 KKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE-VSASSTMVFTRTC--------DATRLLA 234 (401)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ivf~~~~--------~~~~~l~ 234 (401)
+....+......+...+...... ...+... .+....+...+..+... ..+.+++|||+.. ..++.++
T Consensus 398 prtl~l~~~~~l~~~~i~~~p~~--r~~i~~~--~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~ 473 (630)
T TIGR00643 398 PRTLALTVYGDLDTSIIDELPPG--RKPITTV--LIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALY 473 (630)
T ss_pred cHHHHHHhcCCcceeeeccCCCC--CCceEEE--EeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHH
Confidence 65443322111111111111110 1112222 22233333333333333 2578999999875 4566777
Q ss_pred HHHHhc--CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC-ChhHHHHHhhhcccC
Q 015759 235 LMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARA 311 (401)
Q Consensus 235 ~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~ 311 (401)
+.|.+. ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.|++||+||.
T Consensus 474 ~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 553 (630)
T TIGR00643 474 ERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG 553 (630)
T ss_pred HHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC
Confidence 777764 67899999999999999999999999999999999999999999999999999986 688899999999999
Q ss_pred CCCceEEEEec
Q 015759 312 GRTGVAISLVN 322 (401)
Q Consensus 312 g~~g~~i~~~~ 322 (401)
|+.|.|++++.
T Consensus 554 g~~g~~il~~~ 564 (630)
T TIGR00643 554 DHQSYCLLVYK 564 (630)
T ss_pred CCCcEEEEEEC
Confidence 99999999983
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.4e-40 Score=324.00 Aligned_cols=300 Identities=20% Similarity=0.242 Sum_probs=231.8
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHH-HhccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-ALGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~-~~~~~~~i~~~~~ 80 (401)
|+.++.+++++|++|+||||||+++.+++++... .+.+++|+.|+++++.|+++++. .++...+..+.+.
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 4567778999999999999999999999887652 34579999999999999999985 4444455566555
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchh-hccccccHH-HHHHHHHhCCCCceEEEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEK-SLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h-~~~~~~~~~-~~~~i~~~~~~~~~~i~~ 158 (401)
.+... .....++|+|+|++.|++.+.... .+.++++|||||+| +.++.++.. .+..+...+++..|+++|
T Consensus 81 vr~~~------~~s~~t~I~v~T~G~Llr~l~~d~--~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGEN------KVSRRTRLEVVTEGILTRMIQDDP--ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred Ecccc------ccCCCCcEEEECCcHHHHHHhhCc--ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 54432 223457899999999999887744 68899999999999 466655543 345566667778899999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChh-----HHHHHHHHhcCCCCEEEEecchHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD-----CYLVYILTEVSASSTMVFTRTCDATRLL 233 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~ivf~~~~~~~~~l 233 (401)
|||++... ...++.++..+....... .+.+.|...+...+. ..+..++.. ..+++|||+++..+++.+
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr~~---pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGRSF---PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRV 225 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCcce---eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHH
Confidence 99998753 345555555555443322 244455444333221 122233322 468899999999999999
Q ss_pred HHHHHh---cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC--------------
Q 015759 234 ALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT-------------- 296 (401)
Q Consensus 234 ~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~-------------- 296 (401)
++.|.+ .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|++++||+++.|.
T Consensus 226 ~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 305 (819)
T TIGR01970 226 QEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLE 305 (819)
T ss_pred HHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceee
Confidence 999987 478899999999999999999999999999999999999999999999999999874
Q ss_pred ----ChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 297 ----NSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 297 ----s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
|..++.||.||+||. .+|.||.+++..+.
T Consensus 306 ~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 306 TVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred EEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 234689999999998 79999999987653
No 54
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.6e-40 Score=314.34 Aligned_cols=312 Identities=16% Similarity=0.107 Sum_probs=225.6
Q ss_pred ccccccCCccEEEEcCCCcHHHHHH---------HHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAF---------ALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 72 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~---------~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~ 72 (401)
+++.+++|+++|++|+||||||.+. ++|.+..+..-. ......++++++|+++|+.|+...+.+....
T Consensus 172 il~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~---~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~ 248 (675)
T PHA02653 172 IFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID---PNFIERPIVLSLPRVALVRLHSITLLKSLGF 248 (675)
T ss_pred HHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc---cccCCcEEEEECcHHHHHHHHHHHHHHHhCc
Confidence 5788999999999999999999873 223333221100 0114568999999999999999998765432
Q ss_pred ---CCceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC
Q 015759 73 ---ISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI 149 (401)
Q Consensus 73 ---~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~ 149 (401)
.+..+...+|+.+..... ......+|+++|++... ..+..+++||+||||++...+ +.+..++...
T Consensus 249 ~~~~g~~v~v~~Gg~~~~~~~-t~~k~~~Ilv~T~~L~l--------~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~ 317 (675)
T PHA02653 249 DEIDGSPISLKYGSIPDELIN-TNPKPYGLVFSTHKLTL--------NKLFDYGTVIIDEVHEHDQIG--DIIIAVARKH 317 (675)
T ss_pred cccCCceEEEEECCcchHHhh-cccCCCCEEEEeCcccc--------cccccCCEEEccccccCccch--hHHHHHHHHh
Confidence 356788889987732112 22235789999975311 146789999999999876643 4555555433
Q ss_pred -CCCceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC----------CChhHHHHHHHHh--cC
Q 015759 150 -PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA----------KYKDCYLVYILTE--VS 216 (401)
Q Consensus 150 -~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~l~~--~~ 216 (401)
++.+|+++||||++.++..+ ..++.++..+..... ....+.+.+..... ..+...+..+... ..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~ 394 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPK 394 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhccc
Confidence 34468999999999887776 567777877776532 22345555543221 1122222222222 23
Q ss_pred CCCEEEEecchHHHHHHHHHHHhc--CCceEeecCCCCHHHHHHHHhhc-cCCCceEEEEcCCCCCCCCCCCCCEEEEec
Q 015759 217 ASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKF-KAGECNILICTDVASRGLDIPSVDMVINYD 293 (401)
Q Consensus 217 ~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~ 293 (401)
++++||||+++.+++.+++.|++. ++.+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|++++||+++
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G 472 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTG 472 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECC
Confidence 578999999999999999999987 68999999999975 4566776 689999999999999999999999999998
Q ss_pred ---CCC---------ChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHH
Q 015759 294 ---IPT---------NSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 333 (401)
Q Consensus 294 ---~p~---------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~ 333 (401)
.|. |.++|.||+||+||. ++|.|+.++++.+...+.++.
T Consensus 473 ~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 473 RVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 554 788999999999998 789999999877654444443
No 55
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=4.3e-40 Score=324.90 Aligned_cols=299 Identities=19% Similarity=0.260 Sum_probs=230.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH-hccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~-~~~~~~i~~~~~ 80 (401)
|+.++.++++++++||||||||++|.+++++... ...+++|+.|+|+++.|+++.+.+ ++...+..+...
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~---------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG---------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC---------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 4567788999999999999999999988886532 234799999999999999999854 555556677776
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhh-ccccccH-HHHHHHHHhCCCCceEEEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFE-KSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~-~~~~~i~~~~~~~~~~i~~ 158 (401)
.++.+.. ....+|+|+||++|++.+.... .+.++++|||||+|. .++.++. ..+..+...+++..|+++|
T Consensus 84 vr~~~~~------~~~t~I~v~T~G~Llr~l~~d~--~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 84 MRAESKV------GPNTRLEVVTEGILTRMIQRDP--ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred ecCcccc------CCCCcEEEEChhHHHHHHhhCC--CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 6654321 2346899999999999888644 688999999999996 3443332 2344566667778899999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhH-----HHHHHHHhcCCCCEEEEecchHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDC-----YLVYILTEVSASSTMVFTRTCDATRLL 233 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~ivf~~~~~~~~~l 233 (401)
|||++.. . ...++.++..+....... .+.+.|...+...+.. .+..++. ...+.+|||+++..+++.+
T Consensus 156 SATl~~~--~-l~~~~~~~~~I~~~gr~~---pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l 228 (812)
T PRK11664 156 SATLDND--R-LQQLLPDAPVIVSEGRSF---PVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRV 228 (812)
T ss_pred ecCCCHH--H-HHHhcCCCCEEEecCccc---cceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHH
Confidence 9999864 2 244555555554443321 3455555454433322 2222222 2468999999999999999
Q ss_pred HHHHHh---cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC--------------
Q 015759 234 ALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT-------------- 296 (401)
Q Consensus 234 ~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~-------------- 296 (401)
++.|.+ .++.+..+||+++.++|..++..|.+|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 229 ~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~ 308 (812)
T PRK11664 229 QEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLV 308 (812)
T ss_pred HHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeE
Confidence 999987 577899999999999999999999999999999999999999999999999987764
Q ss_pred ----ChhHHHHHhhhcccCCCCceEEEEecccc
Q 015759 297 ----NSKDYIHRVGRTARAGRTGVAISLVNQYE 325 (401)
Q Consensus 297 ----s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 325 (401)
|.++|.||.||+||. .+|.||.++++.+
T Consensus 309 ~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 309 TQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred EEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 335799999999998 5999999998664
No 56
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.1e-39 Score=331.81 Aligned_cols=271 Identities=21% Similarity=0.281 Sum_probs=211.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.++.|+|++++||||+|||. |.+++...+.. .+.+++|++||++|+.|+++.+++++...++.+..+.+
T Consensus 89 i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--------~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g 159 (1176)
T PRK09401 89 AKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--------KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYY 159 (1176)
T ss_pred HHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEc
Confidence 5678999999999999999996 45555544432 46789999999999999999999998877888877776
Q ss_pred CCCh-----HHHHHHhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-----------cccH-HHHHH
Q 015759 83 GVDM-----MQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-----------DDFE-KSLDE 144 (401)
Q Consensus 83 ~~~~-----~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~-~~~~~ 144 (401)
+... ......+. ..++|+|+||++|.+++.. +....++++|+||||++++ .+|. +.+..
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~ 236 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEK 236 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHH
Confidence 6532 11222233 4689999999999988762 4556799999999999986 4563 56777
Q ss_pred HHHhCCC------------------------CceEEEEeecCchH-HHHHHHHhcCCCeEEEecccccccccceEEEEEc
Q 015759 145 ILNVIPR------------------------MRQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV 199 (401)
Q Consensus 145 i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (401)
++..++. ..|++++|||+++. +.. ..+.++..+.+........++.+.+..+
T Consensus 237 i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~rnI~~~yi~~ 313 (1176)
T PRK09401 237 AMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLRNIVDSYIVD 313 (1176)
T ss_pred HHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccCCceEEEEEc
Confidence 7766654 67999999999864 332 2234444555555555556777777766
Q ss_pred CCCChhHHHHHHHHhcCCCCEEEEecchHH---HHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEE---
Q 015759 200 PAKYKDCYLVYILTEVSASSTMVFTRTCDA---TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC--- 273 (401)
Q Consensus 200 ~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~--- 273 (401)
+ .+...+..++.... .++||||++... ++.+++.|+..|+.+..+||+| .+.+++|++|+++||||
T Consensus 314 ~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas 385 (1176)
T PRK09401 314 E--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVAS 385 (1176)
T ss_pred c--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecC
Confidence 5 45666777776554 689999999777 9999999999999999999999 23459999999999999
Q ss_pred -cCCCCCCCCCCC-CCEEEEecCCC
Q 015759 274 -TDVASRGLDIPS-VDMVINYDIPT 296 (401)
Q Consensus 274 -T~~~~~Gid~~~-~~~vi~~~~p~ 296 (401)
|+++++|||+|+ +++||||+.|.
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCC
Confidence 689999999999 89999999996
No 57
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-39 Score=321.78 Aligned_cols=301 Identities=18% Similarity=0.249 Sum_probs=219.9
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.+|+|+++++|||||||+++.++++..+. .+.+++|++|+++|+.|+++.+.++. ..++++...+|
T Consensus 31 i~~l~~~~nvlv~apTGSGKTl~a~lail~~l~---------~~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G 100 (674)
T PRK01172 31 IEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL---------AGLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIG 100 (674)
T ss_pred HHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH---------hCCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeC
Confidence 556789999999999999999999998888765 34579999999999999999998764 35788888888
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHh---CCCCceEEEEe
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV---IPRMRQTYLFS 159 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~---~~~~~~~i~~S 159 (401)
+...... ....++|+|+||+++...+...+ ..+.++++||+||+|.+.+.+++..+..++.. +++..|++++|
T Consensus 101 ~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~-~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lS 176 (674)
T PRK01172 101 DYDDPPD---FIKRYDVVILTSEKADSLIHHDP-YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALS 176 (674)
T ss_pred CCCCChh---hhccCCEEEECHHHHHHHHhCCh-hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEe
Confidence 7654322 12358999999999988776654 35788999999999999888888777777654 34567899999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEE-----EEcCCC-ChhHHHHHHHHh--cCCCCEEEEecchHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY-----RFVPAK-YKDCYLVYILTE--VSASSTMVFTRTCDATR 231 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~ 231 (401)
||+++. ..+.. ++.... +... .. ...+.... ...... .....+..++.. ..++++||||++++.++
T Consensus 177 ATl~n~-~~la~-wl~~~~-~~~~--~r-~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~ 250 (674)
T PRK01172 177 ATVSNA-NELAQ-WLNASL-IKSN--FR-PVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAE 250 (674)
T ss_pred CccCCH-HHHHH-HhCCCc-cCCC--CC-CCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHH
Confidence 999753 33333 332211 1000 00 00011000 001111 111112223332 35789999999999999
Q ss_pred HHHHHHHhc-------------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCC
Q 015759 232 LLALMLRNL-------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV 286 (401)
Q Consensus 232 ~l~~~l~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~ 286 (401)
.++..|.+. ...+..+|++++.++|..+++.|++|.++|||||+++++|+|+|+.
T Consensus 251 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~ 330 (674)
T PRK01172 251 DYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR 330 (674)
T ss_pred HHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce
Confidence 999888653 1247889999999999999999999999999999999999999986
Q ss_pred CEEEEec---------CCCChhHHHHHhhhcccCCC--CceEEEEeccc
Q 015759 287 DMVINYD---------IPTNSKDYIHRVGRTARAGR--TGVAISLVNQY 324 (401)
Q Consensus 287 ~~vi~~~---------~p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~ 324 (401)
.+|| .+ .|.+..+|.||+|||||.|. .|.+++++...
T Consensus 331 ~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 331 LVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred EEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 5554 33 35688899999999999985 46677776543
No 58
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=8e-39 Score=295.42 Aligned_cols=299 Identities=19% Similarity=0.146 Sum_probs=207.8
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH---
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM--- 87 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~--- 87 (401)
++++.||||||||++|+++++..+... ...+++|++|+++|+.|+++.+..+... .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHh
Confidence 589999999999999999999775432 5668999999999999999999987432 334444433210
Q ss_pred ---------HHHHH------hCCCCCEEEECchHHHHHHhcC-CC--CCC--CCccEEEEcchhhccccccHHHHHHHHH
Q 015759 88 ---------QQTLA------LGKRPHIVVATPGRLMDHLTNT-KG--FSL--GTLKYLVLDEADRLLNDDFEKSLDEILN 147 (401)
Q Consensus 88 ---------~~~~~------~~~~~~Iii~T~~~l~~~~~~~-~~--~~~--~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 147 (401)
..... .....+|+++||+++...+... .. +.+ -..++||+||+|.+.+.++.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 00000 0124679999999998876652 11 111 123789999999887755444 555544
Q ss_pred hCC-CCceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcC--CCChhHHHHHHHHh-cCCCCEEEE
Q 015759 148 VIP-RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP--AKYKDCYLVYILTE-VSASSTMVF 223 (401)
Q Consensus 148 ~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~-~~~~~~ivf 223 (401)
.++ ...|++++|||+++.+..+.......+......... ......+.+.... ...+...+..++.. ..++++|||
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf 228 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE-ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAII 228 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc-ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEE
Confidence 443 457899999999977766655543221111111000 0001122222222 22344555555544 357899999
Q ss_pred ecchHHHHHHHHHHHhcCC--ceEeecCCCCHHHHHH----HHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCC
Q 015759 224 TRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLG----ALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTN 297 (401)
Q Consensus 224 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s 297 (401)
|++++.++.+++.|++.+. .+..+||+++..+|.+ +++.|++++..+||||+++++|+|++ +++||++..|
T Consensus 229 ~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~-- 305 (358)
T TIGR01587 229 VNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP-- 305 (358)
T ss_pred ECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--
Confidence 9999999999999998776 4999999999999976 48899999999999999999999995 8888888765
Q ss_pred hhHHHHHhhhcccCCCC----ceEEEEeccc
Q 015759 298 SKDYIHRVGRTARAGRT----GVAISLVNQY 324 (401)
Q Consensus 298 ~~~~~Q~~GR~~R~g~~----g~~i~~~~~~ 324 (401)
++.|+||+||+||.|+. |.++++....
T Consensus 306 ~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 306 IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 78999999999999854 3566665543
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.7e-38 Score=302.79 Aligned_cols=289 Identities=15% Similarity=0.171 Sum_probs=204.8
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.++.+++.++++|||+|||.++.. +....... ...++||++||++|+.||.+.+++++......+..+.+
T Consensus 123 v~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~-------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~ 194 (501)
T PHA02558 123 VYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN-------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYS 194 (501)
T ss_pred HHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc-------CCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEec
Confidence 34566788999999999999987644 22222221 23379999999999999999999987543344545555
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
|.... ...+|+|+||+++.+... ..+.++++||+||||++.... +..++..+++.++++++|||+
T Consensus 195 g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLTATp 259 (501)
T PHA02558 195 GTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLTGSL 259 (501)
T ss_pred CcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEeccC
Confidence 54321 247899999999866432 136789999999999987644 456666666677899999999
Q ss_pred chHHHHHH--HHhcCCCeEEEeccc-------------------ccccc--cc-eEEE-----EEcCCCChhHHHHHHHH
Q 015759 163 TKKVKKLQ--RACLKNPVKIEAASK-------------------YSTVD--TL-KQQY-----RFVPAKYKDCYLVYILT 213 (401)
Q Consensus 163 ~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~--~~-~~~~-----~~~~~~~~~~~l~~~l~ 213 (401)
........ ...++ +........ ..... .+ ...+ .......+...+..+..
T Consensus 260 ~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~ 338 (501)
T PHA02558 260 RDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLAL 338 (501)
T ss_pred CCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHH
Confidence 65322111 11111 111111100 00000 00 0000 00111122333333332
Q ss_pred h--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEc-CCCCCCCCCCCCCEEE
Q 015759 214 E--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT-DVASRGLDIPSVDMVI 290 (401)
Q Consensus 214 ~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T-~~~~~Gid~~~~~~vi 290 (401)
. ..+.+++|||+++++++.+++.|++.+.++..+||+++.++|..+++.|++|+..||||| +++++|+|+|++++||
T Consensus 339 ~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vI 418 (501)
T PHA02558 339 KLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVI 418 (501)
T ss_pred HHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEE
Confidence 2 246789999999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred EecCCCChhHHHHHhhhcccCCCCc
Q 015759 291 NYDIPTNSKDYIHRVGRTARAGRTG 315 (401)
Q Consensus 291 ~~~~p~s~~~~~Q~~GR~~R~g~~g 315 (401)
+++++.|...|+||+||++|.+..+
T Consensus 419 l~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 419 FAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999987544
No 60
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-40 Score=267.16 Aligned_cols=302 Identities=31% Similarity=0.529 Sum_probs=260.4
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~~ 81 (401)
||...-|.|++.+|..|.|||.+|++..++.+..-. ....+|++|.||+|+-|+.++...|.... ++++.++.
T Consensus 73 ipqailgmdvlcqaksgmgktavfvl~tlqqiepv~------g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFf 146 (387)
T KOG0329|consen 73 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD------GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFF 146 (387)
T ss_pred hhHHhhcchhheecccCCCceeeeehhhhhhcCCCC------CeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 566777999999999999999999999888875332 45678999999999999999888887654 78999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEee
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
||.........+.+-++|+|+||++++.+..+.. +.+.++...|+|||+.++. -..+..+..+.+..|...|+..+||
T Consensus 147 GG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~-l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsa 225 (387)
T KOG0329|consen 147 GGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS-LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 225 (387)
T ss_pred cceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc-CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeee
Confidence 9999998888888889999999999998777654 7899999999999998876 4577889999999999999999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccc-cccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHh
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN 239 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~ 239 (401)
|++.++...+..++.+|..+.+..+. -....++++|....+..|...+..++....-.+++||+.++....
T Consensus 226 tlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~-------- 297 (387)
T KOG0329|consen 226 TLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS-------- 297 (387)
T ss_pred ecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh--------
Confidence 99999999999999999888776553 445678889999999999999999999999999999999876500
Q ss_pred cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEE
Q 015759 240 LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAIS 319 (401)
Q Consensus 240 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~ 319 (401)
| +.+ +|+|+.+++|+|+..++.++|||.|.++++|+||.||+||.|.+|.+++
T Consensus 298 -----------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglait 350 (387)
T KOG0329|consen 298 -----------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 350 (387)
T ss_pred -----------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceee
Confidence 2 224 8999999999999999999999999999999999999999999999999
Q ss_pred Eeccc-cHHHHHHHHHHhCCCCCCCCCC
Q 015759 320 LVNQY-ELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 320 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
+++.. +...+..+.+.+...+.++|.+
T Consensus 351 fvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 351 FVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred hhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99865 5566666666666665555543
No 61
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9.1e-38 Score=304.65 Aligned_cols=304 Identities=22% Similarity=0.265 Sum_probs=227.1
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
+-+.+|+|++|++|||||||+++++.++..+.+ .+.+++|+||+++|+.|.++++..+ ..+|+++...+|+
T Consensus 42 ~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~--------~~~k~vYivPlkALa~Ek~~~~~~~-~~~GirV~~~TgD 112 (766)
T COG1204 42 KGLLSDENVLISAPTGSGKTLIALLAILSTLLE--------GGGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGISTGD 112 (766)
T ss_pred ccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh--------cCCcEEEEeChHHHHHHHHHHhhhH-HhcCCEEEEecCC
Confidence 345568999999999999999999999998876 3678999999999999999999933 4568999999999
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCC---ceEEEEee
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM---RQTYLFSA 160 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~---~~~i~~SA 160 (401)
........ .+++|+|+||+++.....+... .+..+++||+||+|.+.+...++.+..+....... .|++++||
T Consensus 113 ~~~~~~~l---~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSA 188 (766)
T COG1204 113 YDLDDERL---ARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSA 188 (766)
T ss_pred cccchhhh---ccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEee
Confidence 77544222 3689999999999887777664 67889999999999777776888888877665433 68999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEec-ccccccccceEEEEEcCCCC-------hhHHHHHHHHh-cCCCCEEEEecchHHHH
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAA-SKYSTVDTLKQQYRFVPAKY-------KDCYLVYILTE-VSASSTMVFTRTCDATR 231 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~l~~-~~~~~~ivf~~~~~~~~ 231 (401)
|+++. .++....-.++..-... ..........+.+....... ....+...+.. ..+++++|||++++.+.
T Consensus 189 TlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 189 TLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred ecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 99874 33333222222211111 11111112222233222222 23333333333 36789999999999999
Q ss_pred HHHHHHHhc-------------------------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEc
Q 015759 232 LLALMLRNL-------------------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICT 274 (401)
Q Consensus 232 ~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T 274 (401)
..++.+... ...+..+|.+++.++|..+.+.|+.|.++||+||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 998888731 1246789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCEEE----Eec-----CCCChhHHHHHhhhcccCCCC--ceEEEEe
Q 015759 275 DVASRGLDIPSVDMVI----NYD-----IPTNSKDYIHRVGRTARAGRT--GVAISLV 321 (401)
Q Consensus 275 ~~~~~Gid~~~~~~vi----~~~-----~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~ 321 (401)
+.++.|+|+|.-.++| .|+ .+.+.-++.|++|||||.|-+ |.++++.
T Consensus 348 pTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 348 PTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred hHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 9999999999877666 366 456788999999999999844 6676666
No 62
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=5.3e-36 Score=287.29 Aligned_cols=305 Identities=17% Similarity=0.168 Sum_probs=221.1
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC--
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD-- 85 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~-- 85 (401)
-++..|+.++||+|||++|++|++...+ .+..++|++|+++|+.|+++++..+...+++.+..+.++..
T Consensus 82 l~~G~Iaem~TGeGKTLta~Lpa~l~aL---------~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~ 152 (762)
T TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNAL---------TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDE 152 (762)
T ss_pred hcCCceeEecCCcchHHHHHHHHHHHhh---------cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCcc
Confidence 3444799999999999999999877665 45569999999999999999999998888999988776521
Q ss_pred -hHHHHHHhCCCCCEEEECchHH-HHHHhcC-----CCCCCCCccEEEEcchhhccccc----------------cHHHH
Q 015759 86 -MMQQTLALGKRPHIVVATPGRL-MDHLTNT-----KGFSLGTLKYLVLDEADRLLNDD----------------FEKSL 142 (401)
Q Consensus 86 -~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~-----~~~~~~~~~~iIiDE~h~~~~~~----------------~~~~~ 142 (401)
..........+++|+++||++| .+++... ....+..+.++|+||||.++-.. +....
T Consensus 153 ~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~ 232 (762)
T TIGR03714 153 EYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIA 232 (762)
T ss_pred ccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHH
Confidence 2222233335799999999999 4545321 12346788999999999853211 00111
Q ss_pred HHHHHhCCCC----------------------------------------------------------------------
Q 015759 143 DEILNVIPRM---------------------------------------------------------------------- 152 (401)
Q Consensus 143 ~~i~~~~~~~---------------------------------------------------------------------- 152 (401)
..+...+...
T Consensus 233 ~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD 312 (762)
T TIGR03714 233 DTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLD 312 (762)
T ss_pred HHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEE
Confidence 1111111100
Q ss_pred -----------------------------------------------ceEEEEeecCchHHHHHHHHhcCCCeEEEeccc
Q 015759 153 -----------------------------------------------RQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185 (401)
Q Consensus 153 -----------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
..+.+||+|......++...+.-.... ++..
T Consensus 313 ~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~--IPt~ 390 (762)
T TIGR03714 313 RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVK--IPTN 390 (762)
T ss_pred CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEE--cCCC
Confidence 256777777655555555443222222 2221
Q ss_pred ccccccceEEEEEcCCCChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhc
Q 015759 186 YSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 263 (401)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 263 (401)
............+.....|...+...+.. ..+.++||||++++.++.++..|.+.|+.+..+|+++...++..+...+
T Consensus 391 kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag 470 (762)
T TIGR03714 391 KPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAG 470 (762)
T ss_pred CCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcC
Confidence 11111111223344445566667666654 4688999999999999999999999999999999999999988888888
Q ss_pred cCCCceEEEEcCCCCCCCCCC---------CCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 264 KAGECNILICTDVASRGLDIP---------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 264 ~~~~~~vLv~T~~~~~Gid~~---------~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
+.| .|+|||+++++|+|++ ++++|++++.|....+ .||+||+||.|.+|.++++++.+|.
T Consensus 471 ~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 471 QKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 777 7999999999999999 8999999999988766 9999999999999999999988664
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.8e-37 Score=290.58 Aligned_cols=307 Identities=21% Similarity=0.204 Sum_probs=233.1
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.++.|+ |..+.||+|||++|.+|++...+ .++.++|++||++||.|.++++..+...+++++..+.|
T Consensus 112 ~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al---------~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~g 180 (656)
T PRK12898 112 GLALLSGR--LAEMQTGEGKTLTATLPAGTAAL---------AGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVE 180 (656)
T ss_pred HHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh---------cCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 45677888 99999999999999999998765 56789999999999999999999999888999999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHH-HHHHhcCCC------------------------CCCCCccEEEEcchhhcccc-
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKG------------------------FSLGTLKYLVLDEADRLLND- 136 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~~------------------------~~~~~~~~iIiDE~h~~~~~- 136 (401)
+.+.. ......+++|+++|...| .+++...-. .-...+.+.||||+|.++=+
T Consensus 181 g~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDe 258 (656)
T PRK12898 181 DQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDE 258 (656)
T ss_pred CCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeecc
Confidence 97654 333345699999998877 444433210 11355789999999962210
Q ss_pred -----------------ccHHHHHHHHHhC--------------------------------C-----------------
Q 015759 137 -----------------DFEKSLDEILNVI--------------------------------P----------------- 150 (401)
Q Consensus 137 -----------------~~~~~~~~i~~~~--------------------------------~----------------- 150 (401)
.+......+...+ +
T Consensus 259 artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al 338 (656)
T PRK12898 259 ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQAL 338 (656)
T ss_pred CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHH
Confidence 0000000000000 0
Q ss_pred -------C-------------------------------------------------------------CceEEEEeecC
Q 015759 151 -------R-------------------------------------------------------------MRQTYLFSATM 162 (401)
Q Consensus 151 -------~-------------------------------------------------------------~~~~i~~SAT~ 162 (401)
+ ...+.+||||.
T Consensus 339 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa 418 (656)
T PRK12898 339 SALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTA 418 (656)
T ss_pred HHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcC
Confidence 0 03578999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhc
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL 240 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~ 240 (401)
.....++...+..++..+...... .....+.+..+....|...+...+... .+.++||||+|++.++.+++.|.+.
T Consensus 419 ~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~ 496 (656)
T PRK12898 419 REVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREA 496 (656)
T ss_pred hHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 988888888887777666544433 222334455566666777777777654 3678999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCC---CCC-----EEEEecCCCChhHHHHHhhhcccCC
Q 015759 241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP---SVD-----MVINYDIPTNSKDYIHRVGRTARAG 312 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~---~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~g 312 (401)
|+.+..+|++++..++ .+..|..+...|+|||+++++|+|++ ++. +||+++.|.|...|.||+||+||.|
T Consensus 497 gi~~~~Lhg~~~~rE~--~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG 574 (656)
T PRK12898 497 GLPHQVLNAKQDAEEA--AIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQG 574 (656)
T ss_pred CCCEEEeeCCcHHHHH--HHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCC
Confidence 9999999999765544 44455555557999999999999998 565 9999999999999999999999999
Q ss_pred CCceEEEEeccccH
Q 015759 313 RTGVAISLVNQYEL 326 (401)
Q Consensus 313 ~~g~~i~~~~~~~~ 326 (401)
++|.++++++.+|.
T Consensus 575 ~~G~s~~~is~eD~ 588 (656)
T PRK12898 575 DPGSYEAILSLEDD 588 (656)
T ss_pred CCeEEEEEechhHH
Confidence 99999999998663
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2e-36 Score=308.49 Aligned_cols=270 Identities=20% Similarity=0.286 Sum_probs=204.2
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEE---E
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCA---V 79 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~---~ 79 (401)
++.++.|+|++++||||+|||+ |.+++...+.. .+.+++|++||++|+.|+++.+++++...++.+. .
T Consensus 87 i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~ 157 (1171)
T TIGR01054 87 AKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--------KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGA 157 (1171)
T ss_pred HHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--------cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeee
Confidence 5678899999999999999997 56666655432 4678999999999999999999999876665543 4
Q ss_pred EEcCCChHHHHH---HhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-----------cccHHH-HH
Q 015759 80 LVGGVDMMQQTL---ALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-----------DDFEKS-LD 143 (401)
Q Consensus 80 ~~~~~~~~~~~~---~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~~-~~ 143 (401)
++|+.+...+.. .+. .+++|+|+||++|.+++.... . .++++|+||||++++ .+|.+. +.
T Consensus 158 ~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~ 233 (1171)
T TIGR01054 158 YHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIE 233 (1171)
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHH
Confidence 678877654432 222 358999999999988776522 2 799999999999987 456542 33
Q ss_pred HHH----------------------HhCCCCce--EEEEeecC-chHHHHHHHHhcCCCeEEEecccccccccceEEEEE
Q 015759 144 EIL----------------------NVIPRMRQ--TYLFSATM-TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRF 198 (401)
Q Consensus 144 ~i~----------------------~~~~~~~~--~i~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (401)
.++ +.+++..| ++++|||. +..... .++.+...+.+........++.+.+..
T Consensus 234 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~~~~~r~I~~~~~~ 310 (1171)
T TIGR01054 234 KAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGGSDTLRNVVDVYVE 310 (1171)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCccccccceEEEEEe
Confidence 332 23444444 56789994 543322 334555556665555555677777664
Q ss_pred cCCCChhHHHHHHHHhcCCCCEEEEecch---HHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEE--
Q 015759 199 VPAKYKDCYLVYILTEVSASSTMVFTRTC---DATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC-- 273 (401)
Q Consensus 199 ~~~~~~~~~l~~~l~~~~~~~~ivf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~-- 273 (401)
... +...+..++... +.++||||++. +.|+.+++.|.+.|+.+..+||+++ +..++.|++|+++||||
T Consensus 311 ~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~~vLVata 383 (1171)
T TIGR01054 311 DED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEIDVLIGVA 383 (1171)
T ss_pred ccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCCCEEEEec
Confidence 443 234455666554 46899999999 9999999999999999999999997 36899999999999999
Q ss_pred --cCCCCCCCCCCC-CCEEEEecCC
Q 015759 274 --TDVASRGLDIPS-VDMVINYDIP 295 (401)
Q Consensus 274 --T~~~~~Gid~~~-~~~vi~~~~p 295 (401)
|+.+++|+|+|+ +++|||||.|
T Consensus 384 ~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 384 SYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred cccCcccccCCCCccccEEEEECCC
Confidence 489999999999 8999999887
No 65
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.8e-37 Score=318.85 Aligned_cols=305 Identities=19% Similarity=0.186 Sum_probs=231.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC--CceEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI--SLRCAV 79 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~--~i~~~~ 79 (401)
.+|.+++|+|++++||||+|||++++++++.... .+.++||++||++|+.|+.+.++.++... ++.+..
T Consensus 87 ~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---------~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~ 157 (1638)
T PRK14701 87 WAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---------KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVY 157 (1638)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---------cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEE
Confidence 4678999999999999999999965554443221 46689999999999999999999987654 567788
Q ss_pred EEcCCChHHHHH---HhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-----------cccHHHHHH
Q 015759 80 LVGGVDMMQQTL---ALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-----------DDFEKSLDE 144 (401)
Q Consensus 80 ~~~~~~~~~~~~---~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~~~~~ 144 (401)
++|+.+...+.. .+. ..++|+|+||+++.+.+... ...+++++|+||||+++. .+|.+.+..
T Consensus 158 ~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~ 234 (1638)
T PRK14701 158 YHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIE 234 (1638)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceeccccccccchhhhcCCChHHHHH
Confidence 899987765432 233 35899999999998766542 126789999999999976 367666653
Q ss_pred ----HHH----------------------hCCCCce-EEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEE
Q 015759 145 ----ILN----------------------VIPRMRQ-TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYR 197 (401)
Q Consensus 145 ----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (401)
++. .+++.+| .+.+|||.++... ....+.++..+.+........++.+.|.
T Consensus 235 ~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi 312 (1638)
T PRK14701 235 KAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYL 312 (1638)
T ss_pred HHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEE
Confidence 321 2344555 5779999986311 1233456667777666666677777777
Q ss_pred EcCCCChhHHHHHHHHhcCCCCEEEEecchHH---HHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEc
Q 015759 198 FVPAKYKDCYLVYILTEVSASSTMVFTRTCDA---TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT 274 (401)
Q Consensus 198 ~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T 274 (401)
.+....+ ..+..++... +.++||||++++. |+.+++.|.+.|+.+..+|++ |...+++|++|+++|||||
T Consensus 313 ~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT 385 (1638)
T PRK14701 313 NPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGV 385 (1638)
T ss_pred ECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEe
Confidence 6654434 4566666655 5789999999764 689999999999999999995 8899999999999999999
Q ss_pred ----CCCCCCCCCCC-CCEEEEecCCC---ChhHHHHHh-------------hhcccCCCCceEEEEeccccHH
Q 015759 275 ----DVASRGLDIPS-VDMVINYDIPT---NSKDYIHRV-------------GRTARAGRTGVAISLVNQYELE 327 (401)
Q Consensus 275 ----~~~~~Gid~~~-~~~vi~~~~p~---s~~~~~Q~~-------------GR~~R~g~~g~~i~~~~~~~~~ 327 (401)
+.+++|||+|+ +++|||||.|. +.+.|.|-. ||++|.|....++..+...+..
T Consensus 386 ~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 386 ATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred cCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHH
Confidence 47899999999 99999999998 877666654 9999999776665444444433
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-35 Score=287.23 Aligned_cols=305 Identities=17% Similarity=0.202 Sum_probs=226.8
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
++..|+ |+.+.||+|||+++++|++...+ .+..++|++||+.||.|.++++..+...+++++..+.|+.
T Consensus 89 ~l~~G~--Iaem~TGeGKTL~a~lp~~l~al---------~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~ 157 (790)
T PRK09200 89 VLHEGN--IAEMQTGEGKTLTATMPLYLNAL---------EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDI 157 (790)
T ss_pred HHcCCc--eeeecCCCcchHHHHHHHHHHHH---------cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCC
Confidence 445555 99999999999999999987666 5778999999999999999999999999999999999998
Q ss_pred C-hHHHHHHhCCCCCEEEECchHH-HHHHhcCC-----CCCCCCccEEEEcchhhccccc----------------cHHH
Q 015759 85 D-MMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLNDD----------------FEKS 141 (401)
Q Consensus 85 ~-~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~----------------~~~~ 141 (401)
+ ....... ..++|+++||+.| .+++...- ...+..+.++|+||+|.++=.. +...
T Consensus 158 ~~~~~r~~~--y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~ 235 (790)
T PRK09200 158 DDASEKKAI--YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHI 235 (790)
T ss_pred CcHHHHHHh--cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHHH
Confidence 8 4333322 3599999999988 44444321 1245788999999999733110 0011
Q ss_pred HHHHHHhCCC--------------------------------------------------------C-------------
Q 015759 142 LDEILNVIPR--------------------------------------------------------M------------- 152 (401)
Q Consensus 142 ~~~i~~~~~~--------------------------------------------------------~------------- 152 (401)
...+...+.. .
T Consensus 236 ~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~iv 315 (790)
T PRK09200 236 AAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLV 315 (790)
T ss_pred HHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEE
Confidence 1111111100 0
Q ss_pred ------------------------------------------------ceEEEEeecCchHHHHHHHHhcCCCeEEEecc
Q 015759 153 ------------------------------------------------RQTYLFSATMTKKVKKLQRACLKNPVKIEAAS 184 (401)
Q Consensus 153 ------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
..+.+||+|....-.++...+.-....+ +.
T Consensus 316 D~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~I--Pt 393 (790)
T PRK09200 316 DRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQI--PT 393 (790)
T ss_pred ECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEEC--CC
Confidence 2467788887655555544443322222 22
Q ss_pred cccccccceEEEEEcCCCChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhh
Q 015759 185 KYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNK 262 (401)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 262 (401)
...................|...+...+.. ..+.++||||+|++.++.+++.|.+.|+.+..+|+++...++..+...
T Consensus 394 ~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~a 473 (790)
T PRK09200 394 NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEA 473 (790)
T ss_pred CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHc
Confidence 211111111223344555677777776654 368899999999999999999999999999999999999888888888
Q ss_pred ccCCCceEEEEcCCCCCCCCC---CCCC-----EEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 263 FKAGECNILICTDVASRGLDI---PSVD-----MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 263 f~~~~~~vLv~T~~~~~Gid~---~~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
+..| .|+|||+++++|+|+ |++. +||+++.|.+...|.||+||+||.|++|.++++++.+|.
T Consensus 474 g~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 474 GQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 8776 799999999999999 6888 999999999999999999999999999999999987654
No 67
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.4e-35 Score=299.13 Aligned_cols=306 Identities=27% Similarity=0.325 Sum_probs=221.4
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
+|+++++|||+|||.++++++...+. . .+.++||++||++|+.|+.+.++++....+..+..++|+.+....
T Consensus 30 ~n~lv~~ptG~GKT~~a~~~i~~~l~-~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r 101 (773)
T PRK13766 30 KNTLVVLPTGLGKTAIALLVIAERLH-K-------KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKR 101 (773)
T ss_pred CCeEEEcCCCccHHHHHHHHHHHHHH-h-------CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHH
Confidence 39999999999999998887776652 1 567899999999999999999998765444577888888776544
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHH---
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKV--- 166 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~--- 166 (401)
... ...++|+|+||+.+.+.+.... +.+.++++|||||||++........+...+....+.+.++++||||....
T Consensus 102 ~~~-~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~~~~i 179 (773)
T PRK13766 102 AEL-WEKAKVIVATPQVIENDLIAGR-ISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSDEEKI 179 (773)
T ss_pred HHH-HhCCCEEEECHHHHHHHHHcCC-CChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCCHHHH
Confidence 333 3458999999999988776543 57788999999999998764433344444444445567999999984322
Q ss_pred HHHHHHhcCCCeEEEeccc--------------------------------------------ccc--cc----------
Q 015759 167 KKLQRACLKNPVKIEAASK--------------------------------------------YST--VD---------- 190 (401)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~--~~---------- 190 (401)
.............+..... ... ..
T Consensus 180 ~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~ 259 (773)
T PRK13766 180 KEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLG 259 (773)
T ss_pred HHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHH
Confidence 2222221100000000000 000 00
Q ss_pred ---cceEEE-----------------------------------------------------------------------
Q 015759 191 ---TLKQQY----------------------------------------------------------------------- 196 (401)
Q Consensus 191 ---~~~~~~----------------------------------------------------------------------- 196 (401)
.+....
T Consensus 260 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 339 (773)
T PRK13766 260 LQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKA 339 (773)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHH
Confidence 000000
Q ss_pred -EEcCCCChhHHHHHHHHh----cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCC--------CCHHHHHHHHhhc
Q 015759 197 -RFVPAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGH--------MSQSKRLGALNKF 263 (401)
Q Consensus 197 -~~~~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~~~~~r~~~~~~f 263 (401)
.......|...+..++.. ..+.++||||+++.+++.+++.|...++.+..++|. +++.+|..++++|
T Consensus 340 ~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F 419 (773)
T PRK13766 340 KELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKF 419 (773)
T ss_pred HhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHH
Confidence 000011233333444433 467899999999999999999999999999888886 8999999999999
Q ss_pred cCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 264 KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 264 ~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
++|+.++||+|+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.+++++.....
T Consensus 420 ~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 420 RAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred HcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 9999999999999999999999999999999999999999999999986 4888888876543
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.6e-35 Score=280.73 Aligned_cols=305 Identities=18% Similarity=0.183 Sum_probs=228.0
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
++..|+ |..++||+|||+++.+|++...+ .+..++|++||..||.|.++++..+...+++++..+.|+.
T Consensus 67 ~l~~G~--Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~ 135 (745)
T TIGR00963 67 ALHKGK--IAEMKTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGM 135 (745)
T ss_pred hhcCCc--eeeecCCCccHHHHHHHHHHHHH---------hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 344454 99999999999999999965555 4556999999999999999999999999999999999998
Q ss_pred ChHHHHHHhCCCCCEEEECchHH-HHHHhcCC-----CCCCCCccEEEEcchhhccccccH----------------HHH
Q 015759 85 DMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLLNDDFE----------------KSL 142 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~~~----------------~~~ 142 (401)
+...+.... .++|+++||.+| .+++...- ...+..+.++|+||+|+++-...+ ...
T Consensus 136 ~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a 213 (745)
T TIGR00963 136 SPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQA 213 (745)
T ss_pred CHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHH
Confidence 865554444 489999999999 88877642 235688999999999974321000 000
Q ss_pred HHHHHhCC--------------------------------------------------------C---------------
Q 015759 143 DEILNVIP--------------------------------------------------------R--------------- 151 (401)
Q Consensus 143 ~~i~~~~~--------------------------------------------------------~--------------- 151 (401)
..+...+. +
T Consensus 214 ~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD 293 (745)
T TIGR00963 214 NRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVD 293 (745)
T ss_pred HHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEE
Confidence 00000000 0
Q ss_pred ----------------------------------------------CceEEEEeecCchHHHHHHHHhcCCCeEEEeccc
Q 015759 152 ----------------------------------------------MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185 (401)
Q Consensus 152 ----------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
...+.+||+|......++...+.-+...+.....
T Consensus 294 ~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp 373 (745)
T TIGR00963 294 EFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRP 373 (745)
T ss_pred CCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCC
Confidence 0256788888876655665555444333322222
Q ss_pred ccccccceEEEEEcCCCChhHHHHHHH--HhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhc
Q 015759 186 YSTVDTLKQQYRFVPAKYKDCYLVYIL--TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 263 (401)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 263 (401)
....+.. ...+.....|...+...+ .+..+.++||||+++..++.+++.|.+.|+.+..+|++ ..+|+..+..|
T Consensus 374 ~~R~d~~--d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ 449 (745)
T TIGR00963 374 VIRKDLS--DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQ 449 (745)
T ss_pred eeeeeCC--CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHh
Confidence 1111111 122222333444444444 24478999999999999999999999999999999999 77899999999
Q ss_pred cCCCceEEEEcCCCCCCCCCCC-------CCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 264 KAGECNILICTDVASRGLDIPS-------VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 264 ~~~~~~vLv~T~~~~~Gid~~~-------~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
..+...|+|||+++++|+|++. ..+||+++.|.|...|.|+.||+||.|.+|.+.++++.+|.
T Consensus 450 ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 450 AGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred cCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999988 45999999999999999999999999999999999988764
No 69
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=271.48 Aligned_cols=303 Identities=22% Similarity=0.225 Sum_probs=237.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+++|.|.+++++|+||||++.-++-+..++. .+.+.|+++|..+||+|-++.++.--..+++.+..-.|...
T Consensus 229 LLeG~nllVVSaTasGKTLIgElAGi~~~l~--------~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~sr 300 (830)
T COG1202 229 LLEGENLLVVSATASGKTLIGELAGIPRLLS--------GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSR 300 (830)
T ss_pred cccCCceEEEeccCCCcchHHHhhCcHHHHh--------CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhh
Confidence 6799999999999999999988888888876 68889999999999999999998765677888888777644
Q ss_pred hHHHHH----HhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHh---CCCCceEEEE
Q 015759 86 MMQQTL----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV---IPRMRQTYLF 158 (401)
Q Consensus 86 ~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~---~~~~~~~i~~ 158 (401)
...... .....+||||+|++-+...+.... .+.+++.|||||+|.+-+...++-+..++.. +-+..|.+++
T Consensus 301 Ik~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~--~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~L 378 (830)
T COG1202 301 IKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK--DLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYL 378 (830)
T ss_pred hcccCCccccCCCCCCcEEEeechhHHHHHHcCC--cccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEE
Confidence 433321 122368999999999988777764 6889999999999988776666665555443 3456899999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcC-CCChhHHHHHHHHhc--------CCCCEEEEecchHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKYKDCYLVYILTEV--------SASSTMVFTRTCDA 229 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~--------~~~~~ivf~~~~~~ 229 (401)
|||..+. .+++..+.-+...+. ..+-.+..+..++. ...|...+..+.+.. ..+++|||++|++.
T Consensus 379 SATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr 452 (830)
T COG1202 379 SATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRR 452 (830)
T ss_pred EeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhh
Confidence 9998654 455555444444432 22234455566665 455666666555422 46799999999999
Q ss_pred HHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEE----EecCCCChhHHHHHh
Q 015759 230 TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI----NYDIPTNSKDYIHRV 305 (401)
Q Consensus 230 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi----~~~~p~s~~~~~Q~~ 305 (401)
|..++..|...|+.+..+|++++-.+|..+...|.+++..++|+|-+++.|+|+|.-.+++ .-.-..|+.+|.|++
T Consensus 453 ~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~ 532 (830)
T COG1202 453 CHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQML 532 (830)
T ss_pred HHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998654432 122335899999999
Q ss_pred hhcccCCC--CceEEEEeccc
Q 015759 306 GRTARAGR--TGVAISLVNQY 324 (401)
Q Consensus 306 GR~~R~g~--~g~~i~~~~~~ 324 (401)
||+||.+- .|++++++.+.
T Consensus 533 GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 533 GRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cccCCCCcccCceEEEEecCC
Confidence 99999984 49999998764
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=3.4e-35 Score=268.16 Aligned_cols=285 Identities=16% Similarity=0.175 Sum_probs=193.2
Q ss_pred cccccCCc--cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC----CCce
Q 015759 3 LWFCDAGK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG----ISLR 76 (401)
Q Consensus 3 l~~~~~g~--~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~----~~i~ 76 (401)
++++.++. ++++++|||+|||.+|++|++. ...++++++|+++|++|+++.++.+... .+..
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 34556665 3889999999999999988874 2335899999999999999999887632 2456
Q ss_pred EEEEEcCCChHH--------------------HHHHhCCCCCEEEECchHHHHHHhcC---CCC----CCCCccEEEEcc
Q 015759 77 CAVLVGGVDMMQ--------------------QTLALGKRPHIVVATPGRLMDHLTNT---KGF----SLGTLKYLVLDE 129 (401)
Q Consensus 77 ~~~~~~~~~~~~--------------------~~~~~~~~~~Iii~T~~~l~~~~~~~---~~~----~~~~~~~iIiDE 129 (401)
+..+.|...... +.......+.|+++||+.|...+... +.. .+..+++||+||
T Consensus 74 v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE 153 (357)
T TIGR03158 74 LLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDE 153 (357)
T ss_pred EEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEec
Confidence 666666522210 01111236789999999997655431 110 247899999999
Q ss_pred hhhccccccH-----HHHHHHHHhCCCCceEEEEeecCchHHHHHHHHh--cCCCeEEEeccccc---------------
Q 015759 130 ADRLLNDDFE-----KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC--LKNPVKIEAASKYS--------------- 187 (401)
Q Consensus 130 ~h~~~~~~~~-----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~--------------- 187 (401)
+|.+...... .....++.......+++++|||+++.+...+... ++.+..........
T Consensus 154 ~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~ 233 (357)
T TIGR03158 154 FHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQS 233 (357)
T ss_pred ccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccc
Confidence 9976543221 1223333333334689999999998877776654 33333221111000
Q ss_pred ---ccccceEEEEEcCCCChhHHHHHHHH-------hcCCCCEEEEecchHHHHHHHHHHHhcC--CceEeecCCCCHHH
Q 015759 188 ---TVDTLKQQYRFVPAKYKDCYLVYILT-------EVSASSTMVFTRTCDATRLLALMLRNLG--QRAIPISGHMSQSK 255 (401)
Q Consensus 188 ---~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~~ivf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~ 255 (401)
....+.+.+.. ....+...+..++. ...++++||||+++..++.+++.|++.+ ..+..+||.+++.+
T Consensus 234 ~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 234 FRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred cceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 00133333333 33334433322222 2356799999999999999999999865 57888999999998
Q ss_pred HHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcc
Q 015759 256 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTA 309 (401)
Q Consensus 256 r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~ 309 (401)
|.+. ++..|||||+++++|+|++.. +|| ++ |.+.+.|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8755 367899999999999999876 555 45 889999999999986
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.1e-35 Score=292.16 Aligned_cols=324 Identities=24% Similarity=0.307 Sum_probs=248.9
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCC--ceEEEEE
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS--LRCAVLV 81 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~--i~~~~~~ 81 (401)
..+.+|+|++|+.|||||||.+|++|+++.++..+ ..++|++.||++|++++.++++++....+ +....++
T Consensus 80 ~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-------~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~ 152 (851)
T COG1205 80 RLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP-------SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYT 152 (851)
T ss_pred HHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc-------CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeec
Confidence 35678999999999999999999999999999864 44799999999999999999999987776 8889999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC---CCCCCccEEEEcchhhccccccHHHHHH----H---HHhCCC
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG---FSLGTLKYLVLDEADRLLNDDFEKSLDE----I---LNVIPR 151 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~----i---~~~~~~ 151 (401)
|+...........+.++|+++||+||...+..... +.+.++++||+||+|.. .-.|+..+.. + +...+.
T Consensus 153 Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~GS~vA~llRRL~~~~~~~~~ 231 (851)
T COG1205 153 GDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQGSEVALLLRRLLRRLRRYGS 231 (851)
T ss_pred CCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccchhHHHHHHHHHHHHHhccCC
Confidence 99988888777888999999999999885554332 24677999999999943 3334444333 3 333456
Q ss_pred CceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC---------CChhHHHHHHHHh--cCCCCE
Q 015759 152 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA---------KYKDCYLVYILTE--VSASST 220 (401)
Q Consensus 152 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~l~~--~~~~~~ 220 (401)
..|+++.|||..+. .++...+.+......+.... ............+. .........+... ..+-++
T Consensus 232 ~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g-~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~t 309 (851)
T COG1205 232 PLQIICTSATLANP-GEFAEELFGRDFEVPVDEDG-SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQT 309 (851)
T ss_pred CceEEEEeccccCh-HHHHHHhcCCcceeeccCCC-CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceE
Confidence 78999999998665 45555566655555433332 22333334444441 1223333333332 378899
Q ss_pred EEEecchHHHHHHH----HHHHhcC----CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEe
Q 015759 221 MVFTRTCDATRLLA----LMLRNLG----QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY 292 (401)
Q Consensus 221 ivf~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~ 292 (401)
|+|+.+++.++.++ ..+...+ ..+..+++++...+|.++...|+.|+..++++|++++.|+|+.+++.||.+
T Consensus 310 L~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~ 389 (851)
T COG1205 310 LVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAY 389 (851)
T ss_pred EEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhc
Confidence 99999999999987 4454555 568899999999999999999999999999999999999999999999999
Q ss_pred cCCC-ChhHHHHHhhhcccCCCCceEEEEeccc--cHHHHHHHHHHhC
Q 015759 293 DIPT-NSKDYIHRVGRTARAGRTGVAISLVNQY--ELEWYLQIEKLIG 337 (401)
Q Consensus 293 ~~p~-s~~~~~Q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~~~~~~ 337 (401)
+.|. +..++.|+.||+||.++.+..+.+...+ +..+....+..+.
T Consensus 390 g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 390 GYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred CCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999 8999999999999999777776666533 4445555555555
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.8e-35 Score=274.36 Aligned_cols=308 Identities=27% Similarity=0.288 Sum_probs=211.1
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
||+ |+|+||++|||+|||.+++..++.++-.. +..++|+++|++-|+.|+...+..++.. -.+....|+
T Consensus 73 ~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-------p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~ 141 (746)
T KOG0354|consen 73 PAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWR-------PKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGD 141 (746)
T ss_pred Hhh--cCCeEEEeecCCCccchHHHHHHHHHhcC-------CcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccC
Confidence 445 99999999999999998877666655433 5578999999999999999777777644 455555666
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhCCCCceEEEEeecC
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
.........+....+|+|+||+.+.+.+.......++.+.++||||||+..... +...+...+..-....|++++|||+
T Consensus 142 ~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASp 221 (746)
T KOG0354|consen 142 TVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASP 221 (746)
T ss_pred ccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCC
Confidence 443333334445689999999999998887655457889999999999876644 4444445555444444999999997
Q ss_pred chHHHHHHHHhcCCCe-------------------------------------------------------EEEecc---
Q 015759 163 TKKVKKLQRACLKNPV-------------------------------------------------------KIEAAS--- 184 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~--- 184 (401)
............+-.. .+....
T Consensus 222 G~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~ 301 (746)
T KOG0354|consen 222 GSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSY 301 (746)
T ss_pred CccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccc
Confidence 6443332222100000 000000
Q ss_pred -------cccccccce--EE--------------------EEEcC-----------------------------------
Q 015759 185 -------KYSTVDTLK--QQ--------------------YRFVP----------------------------------- 200 (401)
Q Consensus 185 -------~~~~~~~~~--~~--------------------~~~~~----------------------------------- 200 (401)
......+.. +. ..+++
T Consensus 302 ~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~ 381 (746)
T KOG0354|consen 302 EQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMN 381 (746)
T ss_pred cchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHH
Confidence 000000000 00 00000
Q ss_pred -----------CCChhHHHHHHH----HhcCCCCEEEEecchHHHHHHHHHHHhc---CCceEee--------cCCCCHH
Q 015759 201 -----------AKYKDCYLVYIL----TEVSASSTMVFTRTCDATRLLALMLRNL---GQRAIPI--------SGHMSQS 254 (401)
Q Consensus 201 -----------~~~~~~~l~~~l----~~~~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~--------~~~~~~~ 254 (401)
...|...+..++ ...+..++||||.+++.|..+...|.+. |+....+ ..+|++.
T Consensus 382 ~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk 461 (746)
T KOG0354|consen 382 ELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQK 461 (746)
T ss_pred hhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHH
Confidence 000111111111 1225578999999999999999999832 2222222 3479999
Q ss_pred HHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccc
Q 015759 255 KRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 255 ~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
++.++++.|++|+.+|||||+++++|+|++.|+.||-||...|+-.++||.|| ||. +.|.++++....
T Consensus 462 ~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 462 EQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred HHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 99999999999999999999999999999999999999999999999999999 996 468888887743
No 73
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.9e-34 Score=267.46 Aligned_cols=321 Identities=20% Similarity=0.232 Sum_probs=238.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
.+=+++|+.|||||++++++++..+. .|.++..++||..||+|.++.+.++...+++++..++|.......
T Consensus 284 M~RLlQGDVGSGKTvVA~laml~ai~---------~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r 354 (677)
T COG1200 284 MNRLLQGDVGSGKTVVALLAMLAAIE---------AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKAR 354 (677)
T ss_pred hHHHhccCcCCCHHHHHHHHHHHHHH---------cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHH
Confidence 35578999999999999998888776 788999999999999999999999999999999999999876655
Q ss_pred HHHh----CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCC-CceEEEEeecCch
Q 015759 90 TLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR-MRQTYLFSATMTK 164 (401)
Q Consensus 90 ~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 164 (401)
...+ ....+|+|+|..-+.+ ...|.++.++|+||-|++ +-.-...+..-.. .+.++.|||||.+
T Consensus 355 ~~~l~~l~~G~~~ivVGTHALiQd------~V~F~~LgLVIiDEQHRF-----GV~QR~~L~~KG~~~Ph~LvMTATPIP 423 (677)
T COG1200 355 KEILEQLASGEIDIVVGTHALIQD------KVEFHNLGLVIIDEQHRF-----GVHQRLALREKGEQNPHVLVMTATPIP 423 (677)
T ss_pred HHHHHHHhCCCCCEEEEcchhhhc------ceeecceeEEEEeccccc-----cHHHHHHHHHhCCCCCcEEEEeCCCch
Confidence 4433 3368999999654422 357889999999999984 4444444444444 5679999999988
Q ss_pred HHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhc-CCCCEEEEecchH--------HHHHHHH
Q 015759 165 KVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCD--------ATRLLAL 235 (401)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~~~--------~~~~l~~ 235 (401)
..-.+....--+-..+. +... ......-..++.+.....+..+.... .+.++.+.|+-++ .|..+++
T Consensus 424 RTLAlt~fgDldvS~Id---ElP~-GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~ 499 (677)
T COG1200 424 RTLALTAFGDLDVSIID---ELPP-GRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYE 499 (677)
T ss_pred HHHHHHHhccccchhhc---cCCC-CCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHH
Confidence 75555443322222221 1111 11122234445555555555555544 6789999999755 4566777
Q ss_pred HHHhc--CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC-CChhHHHHHhhhcccCC
Q 015759 236 MLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAG 312 (401)
Q Consensus 236 ~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p-~s~~~~~Q~~GR~~R~g 312 (401)
.|+.. +..+..+||.|+.+++.+++++|++|+.+|||||.+++.|+|+|+.+++|..++- ...+++.|..||+||.+
T Consensus 500 ~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~ 579 (677)
T COG1200 500 ELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD 579 (677)
T ss_pred HHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCC
Confidence 77754 4569999999999999999999999999999999999999999999999988765 57889999999999999
Q ss_pred CCceEEEEeccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 015759 313 RTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTEAKRISQMTIKDSG 372 (401)
Q Consensus 313 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (401)
..+.|++++.+...+. -.+-+..+.+..+....+..+++-+|
T Consensus 580 ~qSyC~Ll~~~~~~~~------------------a~~RL~im~~t~DGF~IAE~DLklRG 621 (677)
T COG1200 580 LQSYCVLLYKPPLSEV------------------AKQRLKIMRETTDGFVIAEEDLKLRG 621 (677)
T ss_pred cceEEEEEeCCCCChh------------------HHHHHHHHHhcCCcceehhhhHhccC
Confidence 9999999998775221 12233344555556666666665543
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-34 Score=278.49 Aligned_cols=293 Identities=17% Similarity=0.174 Sum_probs=200.1
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
++.++++|||+|||++.+..+ .. ...++||+||+..|+.||.+++.++.......+..++|+....
T Consensus 274 r~GIIvLPtGaGKTlvai~aa-~~-----------l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-- 339 (732)
T TIGR00603 274 RSGIIVLPCGAGKSLVGVTAA-CT-----------VKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-- 339 (732)
T ss_pred CCcEEEeCCCCChHHHHHHHH-HH-----------hCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc--
Confidence 478999999999999866432 22 2345999999999999999999998654445666666653321
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcC-------CCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNT-------KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~-------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
.....+|+|+|++++....... ..+.-..+++||+||+|++.... +..++..++.. ..+++||||
T Consensus 340 ---~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il~~l~a~-~RLGLTATP 411 (732)
T TIGR00603 340 ---FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVLTIVQAH-CKLGLTATL 411 (732)
T ss_pred ---cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHHHhcCcC-cEEEEeecC
Confidence 1224789999999875432111 11223568999999999885544 44455554433 379999999
Q ss_pred chHHHH--HHHHhcCCCeEEEecccc----cccccceEEEEEcC-----------------------CCChhHHHHHHHH
Q 015759 163 TKKVKK--LQRACLKNPVKIEAASKY----STVDTLKQQYRFVP-----------------------AKYKDCYLVYILT 213 (401)
Q Consensus 163 ~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------------------~~~~~~~l~~~l~ 213 (401)
...-.. ....++ .|..+...-.. .....+...-..++ ...|...+..++.
T Consensus 412 ~ReD~~~~~L~~Li-GP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~ 490 (732)
T TIGR00603 412 VREDDKITDLNFLI-GPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIR 490 (732)
T ss_pred cccCCchhhhhhhc-CCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHH
Confidence 642211 122222 23322221100 00001111111111 1123333444555
Q ss_pred hc--CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCC-CceEEEEcCCCCCCCCCCCCCEEE
Q 015759 214 EV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECNILICTDVASRGLDIPSVDMVI 290 (401)
Q Consensus 214 ~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vLv~T~~~~~Gid~~~~~~vi 290 (401)
.+ .+.++||||.+...++.+++.|. +..+||+++..+|.+++++|+++ .+++||+|+++.+|+|+|++++||
T Consensus 491 ~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI 565 (732)
T TIGR00603 491 FHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLI 565 (732)
T ss_pred HHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEE
Confidence 43 67899999999999999988872 45689999999999999999865 789999999999999999999999
Q ss_pred EecCCC-ChhHHHHHhhhcccCCCCce-------EEEEeccccHHHHH
Q 015759 291 NYDIPT-NSKDYIHRVGRTARAGRTGV-------AISLVNQYELEWYL 330 (401)
Q Consensus 291 ~~~~p~-s~~~~~Q~~GR~~R~g~~g~-------~i~~~~~~~~~~~~ 330 (401)
+++.|. |...|+||+||++|.+..+. .|+++++++.+...
T Consensus 566 ~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 566 QISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred EeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 999985 99999999999999976554 38888887655433
No 75
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4e-34 Score=272.72 Aligned_cols=323 Identities=21% Similarity=0.267 Sum_probs=235.2
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhh-hcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAE-NQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~-~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
+...+.|+||+||||+|||..|++.++..+..+.. ........+++|++|+++||.++++.+.+-....++.+..++|+
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 56688999999999999999999999988876322 12233678899999999999999999988777789999999999
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCC--CCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-------CCce
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTK--GFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-------RMRQ 154 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~--~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-------~~~~ 154 (401)
........ ..++|+|+||+++.-.-+... ...++.+.+||+||+| ++....++.++.|..+.. ...+
T Consensus 202 ~ql~~tei---~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVH-lLhd~RGpvlEtiVaRtlr~vessqs~IR 277 (1230)
T KOG0952|consen 202 TQLTKTEI---ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVH-LLHDDRGPVLETIVARTLRLVESSQSMIR 277 (1230)
T ss_pred chhhHHHH---HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeeh-hhcCcccchHHHHHHHHHHHHHhhhhheE
Confidence 77655442 358999999999733222211 1246788999999999 667778888888766543 4457
Q ss_pred EEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC---ChhHHH-----HHHHH-hcCCCCEEEEec
Q 015759 155 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK---YKDCYL-----VYILT-EVSASSTMVFTR 225 (401)
Q Consensus 155 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l-----~~~l~-~~~~~~~ivf~~ 225 (401)
++++|||+|+...-......+.+..+..-...+.+-.+.+.+...+.. ...... ...+. ...+.+++|||.
T Consensus 278 ivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvh 357 (1230)
T KOG0952|consen 278 IVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVH 357 (1230)
T ss_pred EEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 999999998854333222223234444444444445555666555544 111111 11122 236899999999
Q ss_pred chHHHHHHHHHHHhc-----------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCC
Q 015759 226 TCDATRLLALMLRNL-----------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 282 (401)
Q Consensus 226 ~~~~~~~l~~~l~~~-----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid 282 (401)
++..+...|+.|.+. .....++|.+|...+|..+...|..|.++||+||..++.|+|
T Consensus 358 sR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVN 437 (1230)
T KOG0952|consen 358 SRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVN 437 (1230)
T ss_pred cChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccC
Confidence 999988888888654 124678899999999999999999999999999999999999
Q ss_pred CCCCCEEEE----ecCC------CChhHHHHHhhhcccCC--CCceEEEEeccccHHHHHH
Q 015759 283 IPSVDMVIN----YDIP------TNSKDYIHRVGRTARAG--RTGVAISLVNQYELEWYLQ 331 (401)
Q Consensus 283 ~~~~~~vi~----~~~p------~s~~~~~Q~~GR~~R~g--~~g~~i~~~~~~~~~~~~~ 331 (401)
+|.-.++|- ||.. .+..+.+|..|||||.. ..|.++.+.+.+-.+.+..
T Consensus 438 LPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 438 LPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYES 498 (1230)
T ss_pred CcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHH
Confidence 986555553 3322 24567899999999975 5688888887665544433
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.1e-34 Score=286.70 Aligned_cols=295 Identities=24% Similarity=0.330 Sum_probs=206.2
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC----cHHHHHHHHHHHHH-hccCCCce
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP----TRELAIQISEQFEA-LGSGISLR 76 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P----~~~L~~q~~~~l~~-~~~~~~i~ 76 (401)
|++++.+++.++++|+||||||+. +|.+.. .... .....+++.-| +++|+.++++++.. ++...|..
T Consensus 82 Il~ai~~~~VviI~GeTGSGKTTq--lPq~ll--e~g~----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 82 ILEAIRDHQVVIVAGETGSGKTTQ--LPKICL--ELGR----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHhCCeEEEECCCCCCHHHH--HHHHHH--HcCC----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 456777888899999999999984 553322 1110 01223445557 45777888877764 44333332
Q ss_pred EEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchh-hccccccHHH-HHHHHHhCCCCce
Q 015759 77 CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEKS-LDEILNVIPRMRQ 154 (401)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h-~~~~~~~~~~-~~~i~~~~~~~~~ 154 (401)
+.. . ......++|+++||++|++.+...+ .+..+++|||||+| ++++.+|... +..++... +..|
T Consensus 154 vrf--~--------~~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlK 220 (1294)
T PRK11131 154 VRF--N--------DQVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLK 220 (1294)
T ss_pred ecC--c--------cccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHHHHHHhhhcC-CCce
Confidence 210 1 1112468999999999999988755 48899999999999 5777666542 33333332 3468
Q ss_pred EEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCC---hhHHHHHHH------HhcCCCCEEEEec
Q 015759 155 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY---KDCYLVYIL------TEVSASSTMVFTR 225 (401)
Q Consensus 155 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l------~~~~~~~~ivf~~ 225 (401)
+++||||++. ..+...+...| .+.+..... .+...|....... +...+..++ .....+.+|||++
T Consensus 221 vILmSATid~--e~fs~~F~~ap-vI~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAP-IIEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCC-EEEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999975 35555554444 344443322 2444554443221 122222222 1235688999999
Q ss_pred chHHHHHHHHHHHhcCCc---eEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecC--------
Q 015759 226 TCDATRLLALMLRNLGQR---AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI-------- 294 (401)
Q Consensus 226 ~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~-------- 294 (401)
+..+++.+++.|.+.+.. +..+||+++.++|..+++. .|..+|+|||+++++|+|+|++++||+++.
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999999999988764 6789999999999999886 477899999999999999999999999862
Q ss_pred -------C---CChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 295 -------P---TNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 295 -------p---~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
| .|.++|.||+||+||. .+|.||.++++.+.
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 3 4557899999999998 68999999987653
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2e-34 Score=283.15 Aligned_cols=309 Identities=21% Similarity=0.264 Sum_probs=238.9
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
-+++.|+|+++.+|||.||+++|.+|++- .+.-+|||.|..+|.+.+...+... +|....+.++
T Consensus 274 ~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l------------~~gitvVISPL~SLm~DQv~~L~~~----~I~a~~L~s~ 337 (941)
T KOG0351|consen 274 NATLSGKDCFVLMPTGGGKSLCYQLPALL------------LGGVTVVISPLISLMQDQVTHLSKK----GIPACFLSSI 337 (941)
T ss_pred HHHHcCCceEEEeecCCceeeEeeccccc------------cCCceEEeccHHHHHHHHHHhhhhc----Ccceeecccc
Confidence 37889999999999999999999999875 4557899999999988888777443 5888889988
Q ss_pred CChHHHHHH---hC-C--CCCEEEECchHHHHHHhcC-CCCCCCC---ccEEEEcchhhccc--cccHHHHHHHHH---h
Q 015759 84 VDMMQQTLA---LG-K--RPHIVVATPGRLMDHLTNT-KGFSLGT---LKYLVLDEADRLLN--DDFEKSLDEILN---V 148 (401)
Q Consensus 84 ~~~~~~~~~---~~-~--~~~Iii~T~~~l~~~~~~~-~~~~~~~---~~~iIiDE~h~~~~--~~~~~~~~~i~~---~ 148 (401)
.....+... +. . ..+|++.||+++...-.-. ....+.. +.++|+||||+... +.|++.+..+.. .
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~ 417 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR 417 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh
Confidence 877533322 22 2 5789999999985422211 0112333 78999999999877 457777776543 3
Q ss_pred CCCCceEEEEeecCchHHHHHHHHhc--CCCeEEEecccccccccceEEEEEcCCCChh---HHHHHHHHhcCCCCEEEE
Q 015759 149 IPRMRQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAKYKD---CYLVYILTEVSASSTMVF 223 (401)
Q Consensus 149 ~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~ivf 223 (401)
.+. ..++.+|||.+..+..-+-..+ .++..+.. .....++ .|...+.+.+. ..+......++....|||
T Consensus 418 ~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~---sfnR~NL--~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIY 491 (941)
T KOG0351|consen 418 FPG-VPFIALTATATERVREDVIRSLGLRNPELFKS---SFNRPNL--KYEVSPKTDKDALLDILEESKLRHPDQSGIIY 491 (941)
T ss_pred CCC-CCeEEeehhccHHHHHHHHHHhCCCCcceecc---cCCCCCc--eEEEEeccCccchHHHHHHhhhcCCCCCeEEE
Confidence 444 4699999999888877555444 34443321 1222233 33333333222 223333345578899999
Q ss_pred ecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHH
Q 015759 224 TRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303 (401)
Q Consensus 224 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q 303 (401)
|.++.+++.++..|...++.+..||.+|+..+|..+...|..++++|+|||=++++|||-|+++.||||..|.|.+.|.|
T Consensus 492 C~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQ 571 (941)
T KOG0351|consen 492 CLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQ 571 (941)
T ss_pred eCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCceEEEEeccccHHHHHHHHH
Q 015759 304 RVGRTARAGRTGVAISLVNQYELEWYLQIEK 334 (401)
Q Consensus 304 ~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~ 334 (401)
-+|||||.|....|++|+...|...+..+..
T Consensus 572 E~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 572 EAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred hccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999887666555543
No 78
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=5e-34 Score=248.29 Aligned_cols=287 Identities=31% Similarity=0.469 Sum_probs=227.5
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhcc---CCCceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCc
Q 015759 46 AFFACVLSPTRELAIQISEQFEALGS---GISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTL 122 (401)
Q Consensus 46 ~~~~lil~P~~~L~~q~~~~l~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 122 (401)
.+..+|+-|+++|++|....+++|-. +..++...+.|+.....+...+.++.+|+|+||+++.+.+.... +.+...
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~-~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL-VTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc-eeeeee
Confidence 67789999999999999997776643 33466667888888888888888999999999999999887755 567889
Q ss_pred cEEEEcchhhccccccHHHHHHHHHhCC------CCceEEEEeecCc-hHHHHHHHHhcCCCeEEEecccccccccceEE
Q 015759 123 KYLVLDEADRLLNDDFEKSLDEILNVIP------RMRQTYLFSATMT-KKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ 195 (401)
Q Consensus 123 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~------~~~~~i~~SAT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (401)
.++++||++.++..++.+.+.++...+| ...|.+.+|||+. -++..+.+..+.-|..+....++..++.+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 9999999999999999988888887776 3358999999974 23444555555666666666555555555444
Q ss_pred EEEcCCCC---------------------------------------hhHHHHHHHHhcCCCCEEEEecchHHHHHHHHH
Q 015759 196 YRFVPAKY---------------------------------------KDCYLVYILTEVSASSTMVFTRTCDATRLLALM 236 (401)
Q Consensus 196 ~~~~~~~~---------------------------------------~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~ 236 (401)
...+.... +-++-...++.+.-.+.||||.|+..|+.+.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 44333210 011112233445668899999999999999999
Q ss_pred HHhcC---CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 237 LRNLG---QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 237 l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
+.+.| +.++.+|++..+.+|.+.+++|++++++.||||+++++|+|+.++..+||+.+|.....|+||+||+||+.+
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAER 604 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhh
Confidence 98875 578999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceEEEEeccccHHHHHHHH
Q 015759 314 TGVAISLVNQYELEWYLQIE 333 (401)
Q Consensus 314 ~g~~i~~~~~~~~~~~~~~~ 333 (401)
-|.+|+++.......++...
T Consensus 605 mglaislvat~~ekvwyh~c 624 (725)
T KOG0349|consen 605 MGLAISLVATVPEKVWYHWC 624 (725)
T ss_pred cceeEEEeeccchheeehhh
Confidence 89999988644333333333
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-34 Score=249.49 Aligned_cols=307 Identities=21% Similarity=0.268 Sum_probs=226.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
...++|+.|++|||+||+++|.+|.+.. +...+|++|..+|+.++.+.|.++ .+++..+.+..+
T Consensus 33 VK~k~DVyVsMPTGaGKSLCyQLPaL~~------------~gITIV~SPLiALIkDQiDHL~~L----KVp~~SLNSKlS 96 (641)
T KOG0352|consen 33 VKRKCDVYVSMPTGAGKSLCYQLPALVH------------GGITIVISPLIALIKDQIDHLKRL----KVPCESLNSKLS 96 (641)
T ss_pred HhccCcEEEeccCCCchhhhhhchHHHh------------CCeEEEehHHHHHHHHHHHHHHhc----CCchhHhcchhh
Confidence 4567999999999999999999998873 336899999999999999988875 356666666555
Q ss_pred hHHHHHHh------CCCCCEEEECchHHHH-----HHhcCCCCCCCCccEEEEcchhhcccc--ccHHHHH---HHHHhC
Q 015759 86 MMQQTLAL------GKRPHIVVATPGRLMD-----HLTNTKGFSLGTLKYLVLDEADRLLND--DFEKSLD---EILNVI 149 (401)
Q Consensus 86 ~~~~~~~~------~~~~~Iii~T~~~l~~-----~~~~~~~~~~~~~~~iIiDE~h~~~~~--~~~~~~~---~i~~~~ 149 (401)
..++.+.+ +....+++.||++... .+..- ..-..+.++|+||+|+...+ .|++.+- .+.+.+
T Consensus 97 t~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L--~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~ 174 (641)
T KOG0352|consen 97 TVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL--ANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC 174 (641)
T ss_pred HHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH--hhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhC
Confidence 54444332 2356799999997422 22211 12345789999999988774 4666544 445555
Q ss_pred CCCceEEEEeecCchHHHHHHH--HhcCCCeEEEecccccccccceEEE-EEcCCCChhHHHHHHHHh------------
Q 015759 150 PRMRQTYLFSATMTKKVKKLQR--ACLKNPVKIEAASKYSTVDTLKQQY-RFVPAKYKDCYLVYILTE------------ 214 (401)
Q Consensus 150 ~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~------------ 214 (401)
+.. .-+.+|||.++.+++.+. ..+.+|..+.........--+...+ ..+. .....+.++-.+
T Consensus 175 ~~v-pwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~--D~~~~LaDF~~~~LG~~~~~~~~~ 251 (641)
T KOG0352|consen 175 PGV-PWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFIT--DCLTVLADFSSSNLGKHEKASQNK 251 (641)
T ss_pred CCC-ceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhh--hHhHhHHHHHHHhcCChhhhhcCC
Confidence 543 478999999998877443 3456666554333221100000000 0000 011112111111
Q ss_pred -cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEec
Q 015759 215 -VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 293 (401)
Q Consensus 215 -~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~ 293 (401)
...+-.||||.|+++++.++-.|...|+++..+|.++...+|.++.+.|.+++..|+++|..+++|+|-|+++.||+++
T Consensus 252 K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~ 331 (641)
T KOG0352|consen 252 KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWS 331 (641)
T ss_pred CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecC
Confidence 1235679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHH
Q 015759 294 IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIE 333 (401)
Q Consensus 294 ~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~ 333 (401)
.|.+..-|.|-.||+||.|+.+.|-++++.+|...+..+.
T Consensus 332 ~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 332 PSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred chhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999998877666553
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.6e-33 Score=274.58 Aligned_cols=321 Identities=17% Similarity=0.152 Sum_probs=207.6
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
...+|+..++|.|||..+.+.+-..+.. . ...++|||||. .|..||..++.+.. ++....+.++.....
T Consensus 169 ~~R~LLADEvGLGKTIeAglil~~l~~~-g------~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~~i~~~~~~~~~ 237 (956)
T PRK04914 169 APRVLLADEVGLGKTIEAGMIIHQQLLT-G------RAERVLILVPE-TLQHQWLVEMLRRF---NLRFSLFDEERYAEA 237 (956)
T ss_pred CCCEEEEeCCcCcHHHHHHHHHHHHHHc-C------CCCcEEEEcCH-HHHHHHHHHHHHHh---CCCeEEEcCcchhhh
Confidence 3579999999999999876644333332 2 44679999997 79999999997543 344444433321110
Q ss_pred H--HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc--cHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 89 Q--TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD--FEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 89 ~--~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
. ........+++|+|++.+...-.....+.-..+++||+||||++.... -...+..+.....+...++++||||..
T Consensus 238 ~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q 317 (956)
T PRK04914 238 QHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQ 317 (956)
T ss_pred cccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCccc
Confidence 0 001112468999999987642111111223468999999999986311 111222222222233458999999742
Q ss_pred -HH------------------HHHHHH-------------hc-CCCe---------------------------------
Q 015759 165 -KV------------------KKLQRA-------------CL-KNPV--------------------------------- 178 (401)
Q Consensus 165 -~~------------------~~~~~~-------------~~-~~~~--------------------------------- 178 (401)
.. ..+... ++ ..+.
T Consensus 318 ~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~ 397 (956)
T PRK04914 318 LGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQA 397 (956)
T ss_pred CCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHH
Confidence 00 001000 00 0000
Q ss_pred ----------------EEEecccc----cccccceEEEE-------------------------------------EcCC
Q 015759 179 ----------------KIEAASKY----STVDTLKQQYR-------------------------------------FVPA 201 (401)
Q Consensus 179 ----------------~~~~~~~~----~~~~~~~~~~~-------------------------------------~~~~ 201 (401)
.+-..+.. ..+....+.+. ....
T Consensus 398 ~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~~~~~~~~~~~ 477 (956)
T PRK04914 398 ARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQEFEDNATWWNF 477 (956)
T ss_pred HHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHHHHhhhhhcccc
Confidence 00000000 00000000000 0111
Q ss_pred CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHH-HhcCCceEeecCCCCHHHHHHHHhhccCC--CceEEEEcCCCC
Q 015759 202 KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML-RNLGQRAIPISGHMSQSKRLGALNKFKAG--ECNILICTDVAS 278 (401)
Q Consensus 202 ~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vLv~T~~~~ 278 (401)
..|...+..+++...+.++||||+++..+..+++.| ...|+.+..+||+|+..+|.++++.|+++ .+.|||||++++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 224445666666667889999999999999999999 46799999999999999999999999984 589999999999
Q ss_pred CCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCC
Q 015759 279 RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKL 340 (401)
Q Consensus 279 ~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 340 (401)
+|+|++.+++||+||+||++..|.||+||++|.|+.+.+.+++...+......+.+.+...+
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999988777665554445555666555544
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=6.5e-33 Score=271.15 Aligned_cols=327 Identities=21% Similarity=0.232 Sum_probs=252.4
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
.|=+|||+.|-|||.+++-+++..++ .+++|.|+|||.-|++|.++.+.+...++++++..+..=.+..++
T Consensus 616 MDRLiCGDVGFGKTEVAmRAAFkAV~---------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~ 686 (1139)
T COG1197 616 MDRLICGDVGFGKTEVAMRAAFKAVM---------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQ 686 (1139)
T ss_pred chheeecCcCCcHHHHHHHHHHHHhc---------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHH
Confidence 57799999999999999888888877 788999999999999999999999989999999998877666655
Q ss_pred HHHhC----CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 90 TLALG----KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 90 ~~~~~----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
...+. ...||||+|+- ++.. ...|.+++++||||-|++ +-.-++-+..+..+..++-+||||.+.
T Consensus 687 ~~il~~la~G~vDIvIGTHr----LL~k--dv~FkdLGLlIIDEEqRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPR 755 (1139)
T COG1197 687 KEILKGLAEGKVDIVIGTHR----LLSK--DVKFKDLGLLIIDEEQRF-----GVKHKEKLKELRANVDVLTLSATPIPR 755 (1139)
T ss_pred HHHHHHHhcCCccEEEechH----hhCC--CcEEecCCeEEEechhhc-----CccHHHHHHHHhccCcEEEeeCCCCcc
Confidence 54432 37899999943 3333 457899999999999984 444444444555556699999999999
Q ss_pred HHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHh-cCCCCEEEEecchHHHHHHHHHHHhc--CC
Q 015759 166 VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNL--GQ 242 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~l~~~--~~ 242 (401)
.-.|.-..+++...+........+ ...++........-..+++. ..++++...+|.++..+.+++.|++. ..
T Consensus 756 TL~Msm~GiRdlSvI~TPP~~R~p-----V~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa 830 (1139)
T COG1197 756 TLNMSLSGIRDLSVIATPPEDRLP-----VKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEA 830 (1139)
T ss_pred hHHHHHhcchhhhhccCCCCCCcc-----eEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCce
Confidence 888888888887777655443221 12222222222222223333 36889999999999999999999987 45
Q ss_pred ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC-CChhHHHHHhhhcccCCCCceEEEEe
Q 015759 243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-TNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 243 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p-~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
.+.+.||.|+..+-++++..|.+|+.+|||||.+++.|||+|+++++|.-+.. ...+++.|..||+||..+.++||+++
T Consensus 831 rI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 831 RIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred EEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEee
Confidence 68899999999999999999999999999999999999999999988866544 68899999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhhhhhhcCCc
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTEAKRISQMTIKDSGNK 374 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (401)
.+.. .+.+.....-+.+..+.++....+.|..+++.+|.-
T Consensus 911 p~~k-------------~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeIRGaG 950 (1139)
T COG1197 911 PPQK-------------ALTEDAEKRLEAIASFTELGAGFKLAMHDLEIRGAG 950 (1139)
T ss_pred cCcc-------------ccCHHHHHHHHHHHhhhhcCchHHHHhcchhccccc
Confidence 8763 222222223334445566777777888888776543
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-30 Score=247.06 Aligned_cols=286 Identities=21% Similarity=0.193 Sum_probs=192.7
Q ss_pred EEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHH
Q 015759 13 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 92 (401)
Q Consensus 13 ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 92 (401)
++.||||||||.+|+..+... +. .+.++||++|+++|+.|+++.+++.. +..+..++++.+.......
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~--------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LA--------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HH--------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHH
Confidence 478999999999987654433 33 56789999999999999999998754 4678889998776544332
Q ss_pred ----hCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhcccccc------HHHHHHHHHhCCCCceEEEEeecC
Q 015759 93 ----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDF------EKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 93 ----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~------~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
.....+|+|+|+..+. ..+.++++|||||.|.....+. ...+..+.... ...+++++|||+
T Consensus 69 ~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SATP 139 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSATP 139 (505)
T ss_pred HHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCCC
Confidence 2346899999988662 2577899999999997654221 11222333333 456799999998
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCC-----hhHHHHHHHHhc-CCCCEEEEecchHH-------
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-----KDCYLVYILTEV-SASSTMVFTRTCDA------- 229 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~~~-~~~~~ivf~~~~~~------- 229 (401)
+.+....... +....+...............+.....+. ....+..+.... .++++|||+|++..
T Consensus 140 sles~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 140 SLESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred CHHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 7554333321 22222222111111111111111111111 112222232333 56789999776543
Q ss_pred -----------------------------------------------------HHHHHHHHHhc--CCceEeecCCCCHH
Q 015759 230 -----------------------------------------------------TRLLALMLRNL--GQRAIPISGHMSQS 254 (401)
Q Consensus 230 -----------------------------------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~ 254 (401)
.+.+.+.|++. +.++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 47788888877 67899999998876
Q ss_pred HH--HHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEE--ecCCCC----------hhHHHHHhhhcccCCCCceEEEE
Q 015759 255 KR--LGALNKFKAGECNILICTDVASRGLDIPSVDMVIN--YDIPTN----------SKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 255 ~r--~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~--~~~p~s----------~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
.+ +++++.|.+|+.+|||+|++++.|+|+|++++|+. +|...+ ...|.|++||+||.++.|.+++.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 65 88999999999999999999999999999998864 443222 35689999999999989998865
Q ss_pred e
Q 015759 321 V 321 (401)
Q Consensus 321 ~ 321 (401)
.
T Consensus 378 t 378 (505)
T TIGR00595 378 T 378 (505)
T ss_pred e
Confidence 5
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=3.2e-30 Score=252.64 Aligned_cols=293 Identities=20% Similarity=0.189 Sum_probs=200.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
++++++.||||||||.+|+.++...+. .+.++||++|+++|+.|+.+.+++.. +..+..++|+.+...
T Consensus 162 ~~~~Ll~~~TGSGKT~v~l~~i~~~l~---------~g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~ 229 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVYLQAIAEVLA---------QGKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGE 229 (679)
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHH
Confidence 588999999999999999887666554 56789999999999999999998754 468889999987654
Q ss_pred HHHH----hCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH------HHHHHHHHhCCCCceEEEE
Q 015759 89 QTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE------KSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 89 ~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~------~~~~~i~~~~~~~~~~i~~ 158 (401)
+... .....+|+|+|++.+. ..+.++++||+||+|.....+.. ..+. +........+++++
T Consensus 230 r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~ra~~~~~~~il~ 300 (679)
T PRK05580 230 RLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVRAKLENIPVVLG 300 (679)
T ss_pred HHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHHhhccCCCEEEE
Confidence 4332 2346899999998762 35788999999999976542211 1222 22333456789999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC--------ChhHHHHHHHHhc-CCCCEEEEecch--
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK--------YKDCYLVYILTEV-SASSTMVFTRTC-- 227 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~l~~~-~~~~~ivf~~~~-- 227 (401)
|||++.+....... +....+...................... .....+..+.+.. .+.++|||+|.+
T Consensus 301 SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy 378 (679)
T PRK05580 301 SATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGY 378 (679)
T ss_pred cCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 99987654443332 2222222222111000111111111100 1112222222222 456788887642
Q ss_pred ----------------------------------------------------------HHHHHHHHHHHhc--CCceEee
Q 015759 228 ----------------------------------------------------------DATRLLALMLRNL--GQRAIPI 247 (401)
Q Consensus 228 ----------------------------------------------------------~~~~~l~~~l~~~--~~~~~~~ 247 (401)
..++.+++.|++. +.++..+
T Consensus 379 ~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~ 458 (679)
T PRK05580 379 APFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRI 458 (679)
T ss_pred CCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEE
Confidence 1356778888776 7789999
Q ss_pred cCCCC--HHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecC--CCCh----------hHHHHHhhhcccCCC
Q 015759 248 SGHMS--QSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI--PTNS----------KDYIHRVGRTARAGR 313 (401)
Q Consensus 248 ~~~~~--~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~--p~s~----------~~~~Q~~GR~~R~g~ 313 (401)
|+++. .++++++++.|.+|+.+|||+|+++++|+|+|+++.|+.+|. +.+. ..|.|++||+||.++
T Consensus 459 ~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~ 538 (679)
T PRK05580 459 DRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEK 538 (679)
T ss_pred eccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCC
Confidence 99986 467899999999999999999999999999999999865544 3322 568999999999999
Q ss_pred CceEEEEeccc
Q 015759 314 TGVAISLVNQY 324 (401)
Q Consensus 314 ~g~~i~~~~~~ 324 (401)
.|.++......
T Consensus 539 ~g~viiqT~~p 549 (679)
T PRK05580 539 PGEVLIQTYHP 549 (679)
T ss_pred CCEEEEEeCCC
Confidence 99999766543
No 84
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.5e-31 Score=265.39 Aligned_cols=299 Identities=21% Similarity=0.290 Sum_probs=208.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh-ccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL-GSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~-~~~~~i~~~~~ 80 (401)
|+.++.+++.++|+|+||||||+. +|.+. +.... .....+++.-|.+.-+..+++++.+. +...+-.+.+-
T Consensus 75 Il~~l~~~~vvii~g~TGSGKTTq--lPq~l--le~~~----~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 75 IAEAIAENQVVIIAGETGSGKTTQ--LPKIC--LELGR----GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHhCceEEEeCCCCCCcHHH--HHHHH--HHcCC----CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 455677788899999999999985 34332 21110 02336777889998888888776553 33333333322
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchh-hccccccHHH-HHHHHHhCCCCceEEEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD-RLLNDDFEKS-LDEILNVIPRMRQTYLF 158 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h-~~~~~~~~~~-~~~i~~~~~~~~~~i~~ 158 (401)
....+ .....+.|.++|++.|++.+...+ .+..+++|||||+| +.++.++... +..++...+ ..++++|
T Consensus 147 vR~~~------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rp-dLKlIlm 217 (1283)
T TIGR01967 147 VRFHD------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRP-DLKIIIT 217 (1283)
T ss_pred EcCCc------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCC-CCeEEEE
Confidence 21111 112357899999999999887765 47899999999999 5777666543 556655543 5689999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC------ChhHHHHHHHH---hcCCCCEEEEecchHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK------YKDCYLVYILT---EVSASSTMVFTRTCDA 229 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~l~---~~~~~~~ivf~~~~~~ 229 (401)
|||+.. ..+...+...| .+.+.....+ +...|...... .....+...+. ....+.+|||+++..+
T Consensus 218 SATld~--~~fa~~F~~ap-vI~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~E 291 (1283)
T TIGR01967 218 SATIDP--ERFSRHFNNAP-IIEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGERE 291 (1283)
T ss_pred eCCcCH--HHHHHHhcCCC-EEEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHH
Confidence 999974 45555554444 3444433222 23334333211 11122222222 2256899999999999
Q ss_pred HHHHHHHHHhcC---CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC-----------
Q 015759 230 TRLLALMLRNLG---QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP----------- 295 (401)
Q Consensus 230 ~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p----------- 295 (401)
++.+++.|.+.+ ..+..+||+++.++|..++..+ +..+|++||+++++|+|+|++++||+++.+
T Consensus 292 I~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~ 369 (1283)
T TIGR01967 292 IRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKV 369 (1283)
T ss_pred HHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCc
Confidence 999999999874 3588899999999999987654 236899999999999999999999998843
Q ss_pred -------CChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 296 -------TNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 296 -------~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
.|.++|.||.||+||.+ +|.||.++++.+.
T Consensus 370 ~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 370 QRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred cccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 36679999999999997 9999999986653
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.2e-30 Score=246.27 Aligned_cols=303 Identities=17% Similarity=0.197 Sum_probs=216.9
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
.+.-|..++||+|||++|.+|++..++ .+..++|++||++||.|.++++..+...+++.+..+.|+.+...
T Consensus 95 h~G~Iaem~TGeGKTL~a~Lpa~~~al---------~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~ 165 (896)
T PRK13104 95 HEGNIAEMRTGEGKTLVATLPAYLNAI---------SGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKE 165 (896)
T ss_pred ccCccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHH
Confidence 345588999999999999999998776 44569999999999999999999999999999999999987766
Q ss_pred HHHHhCCCCCEEEECchHH-HHHHhcCCCCCC-----CCccEEEEcchhhccccc----------------cHHHHHHHH
Q 015759 89 QTLALGKRPHIVVATPGRL-MDHLTNTKGFSL-----GTLKYLVLDEADRLLNDD----------------FEKSLDEIL 146 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l-~~~~~~~~~~~~-----~~~~~iIiDE~h~~~~~~----------------~~~~~~~i~ 146 (401)
+.... .++|+++||+.| .+++.....+.+ ..+.++|+||+|.++=+. .......+.
T Consensus 166 r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v 243 (896)
T PRK13104 166 KQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLI 243 (896)
T ss_pred HHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHH
Confidence 55544 589999999999 888877633333 578999999999743210 111111111
Q ss_pred HhCCCC--------------------------------------------------------------------------
Q 015759 147 NVIPRM-------------------------------------------------------------------------- 152 (401)
Q Consensus 147 ~~~~~~-------------------------------------------------------------------------- 152 (401)
..+...
T Consensus 244 ~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV 323 (896)
T PRK13104 244 PQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIV 323 (896)
T ss_pred HHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 111100
Q ss_pred --------------------------------------------------------ceEEEEeecCchHHHHHHHHhcCC
Q 015759 153 --------------------------------------------------------RQTYLFSATMTKKVKKLQRACLKN 176 (401)
Q Consensus 153 --------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~ 176 (401)
..+.+||+|......++...+.-.
T Consensus 324 ~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~ 403 (896)
T PRK13104 324 KDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLE 403 (896)
T ss_pred ECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCC
Confidence 123444444433333333333222
Q ss_pred CeEEEecccccccccceEEEEEcCCCChhHHHHHHHH--hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHH
Q 015759 177 PVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQS 254 (401)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 254 (401)
...+........ .......+.....|...+...+. +..+.|+||||+|++.++.++..|.+.|+.+.++|+++...
T Consensus 404 Vv~IPtnkp~~R--~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~ 481 (896)
T PRK13104 404 VVVIPTNRSMIR--KDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEK 481 (896)
T ss_pred EEECCCCCCcce--ecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChH
Confidence 222211111110 00111222222334444444342 44789999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCceEEEEcCCCCCCCCCCC--------------------------------------CCEEEEecCCC
Q 015759 255 KRLGALNKFKAGECNILICTDVASRGLDIPS--------------------------------------VDMVINYDIPT 296 (401)
Q Consensus 255 ~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~--------------------------------------~~~vi~~~~p~ 296 (401)
++..+.+.|+.| .|+|||+++++|+|+.= -=+||-...+.
T Consensus 482 Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe 559 (896)
T PRK13104 482 EAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHE 559 (896)
T ss_pred HHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCc
Confidence 999999999999 49999999999999841 11677788888
Q ss_pred ChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 297 NSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 297 s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
|..---|..||+||-|.+|.+..+++-+|.
T Consensus 560 srRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 560 SRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 888889999999999999999999887654
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=5.1e-31 Score=246.48 Aligned_cols=276 Identities=21% Similarity=0.248 Sum_probs=190.8
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
++..++++|||+|||.+++..+. . ....+|||||+++|+.||++.+.++.... -.+..+.|+.....
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~-~-----------~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~ 121 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIA-E-----------LKRSTLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKELE 121 (442)
T ss_pred CCceEEEeCCCCCHHHHHHHHHH-H-----------hcCCEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceeccC
Confidence 88999999999999998655333 2 23339999999999999998888765321 12333333322211
Q ss_pred HHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHHH-
Q 015759 89 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVK- 167 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~- 167 (401)
. ..|.|+|.+++.... ....+..+.+++||+||||++.+..+......+....+ ++++||||+..-.
T Consensus 122 ------~-~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~----~LGLTATp~R~D~~ 189 (442)
T COG1061 122 ------P-AKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYP----RLGLTATPEREDGG 189 (442)
T ss_pred ------C-CcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccc----eeeeccCceeecCC
Confidence 1 369999999987742 11113345799999999999877666555555444333 8999999863321
Q ss_pred --HHHHHhcCCCeEEEeccccccc----ccceEEEEEcC--------------------------------------CCC
Q 015759 168 --KLQRACLKNPVKIEAASKYSTV----DTLKQQYRFVP--------------------------------------AKY 203 (401)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------------------------------------~~~ 203 (401)
......++ +..+......... ....-....+. ...
T Consensus 190 ~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (442)
T COG1061 190 RIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASER 268 (442)
T ss_pred chhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHH
Confidence 11111111 2333322111000 00000001110 001
Q ss_pred hhHHHHHHHHhc-CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCC
Q 015759 204 KDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 282 (401)
Q Consensus 204 ~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid 282 (401)
+...+..++..+ .+.+++|||.+..++..++..+...+. +..+.+..+..+|..+++.|+.|..++|+++.++.+|+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvD 347 (442)
T COG1061 269 KIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVD 347 (442)
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceec
Confidence 111222233333 477999999999999999999998888 889999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCCCChhHHHHHhhhcccC
Q 015759 283 IPSVDMVINYDIPTNSKDYIHRVGRTARA 311 (401)
Q Consensus 283 ~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 311 (401)
+|+++++|...+..|...|.||+||..|.
T Consensus 348 iP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 348 IPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred CCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999994
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=9.5e-31 Score=252.97 Aligned_cols=316 Identities=20% Similarity=0.254 Sum_probs=236.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhc--CCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ--RTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~--~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
+....|+++|||||+|||..+++.+++.+..+.... -+....+++|++|+++|++.|...+-+....+++.|...+|+
T Consensus 322 l~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD 401 (1674)
T KOG0951|consen 322 LRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGD 401 (1674)
T ss_pred hcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEeccc
Confidence 345588999999999999999999999888755422 223566899999999999999999999888899999999998
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCC-CCCccEEEEcchhhccccccHHHHHHHHHhC-------CCCceE
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFS-LGTLKYLVLDEADRLLNDDFEKSLDEILNVI-------PRMRQT 155 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~-~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-------~~~~~~ 155 (401)
........ .+.+|+||||+..--.-.+..... .+-++++|+||.| |+.+..++.+..+.... ...+..
T Consensus 402 ~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses~~e~~Rl 477 (1674)
T KOG0951|consen 402 SQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSESTEEGSRL 477 (1674)
T ss_pred ccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhhcccCcee
Confidence 66443332 258899999999844433322222 3457899999999 66777888887765543 234679
Q ss_pred EEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChh--------HHHHHHHHhcCCCCEEEEecch
Q 015759 156 YLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD--------CYLVYILTEVSASSTMVFTRTC 227 (401)
Q Consensus 156 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~l~~~~~~~~ivf~~~~ 227 (401)
+++|||+|+...-..... .++..+......+.+-.+.+.++.+..+... .....++.+...+++|||+.++
T Consensus 478 VGLSATLPNy~DV~~Fl~-v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsR 556 (1674)
T KOG0951|consen 478 VGLSATLPNYEDVASFLR-VDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSR 556 (1674)
T ss_pred eeecccCCchhhhHHHhc-cCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 999999998643322222 2233333333344555667777776654322 3345667777889999999999
Q ss_pred HHHHHHHHHHHhc-------------------------------------CCceEeecCCCCHHHHHHHHhhccCCCceE
Q 015759 228 DATRLLALMLRNL-------------------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNI 270 (401)
Q Consensus 228 ~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 270 (401)
+++.+.|+.++.. .+.++++|.+|+..+|..+.+.|.+|.++|
T Consensus 557 kET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqv 636 (1674)
T KOG0951|consen 557 KETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQV 636 (1674)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeE
Confidence 9888888777631 567889999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCEEEE----ecC------CCChhHHHHHhhhcccCCCC--ceEEEEeccccH
Q 015759 271 LICTDVASRGLDIPSVDMVIN----YDI------PTNSKDYIHRVGRTARAGRT--GVAISLVNQYEL 326 (401)
Q Consensus 271 Lv~T~~~~~Gid~~~~~~vi~----~~~------p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~~~ 326 (401)
|++|-.+++|+|+|.-+++|- ||+ +.++.+..|++||+||.+.+ |..++..+..+.
T Consensus 637 lvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~ 704 (1674)
T KOG0951|consen 637 LVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSEL 704 (1674)
T ss_pred EEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHh
Confidence 999999999999988777763 443 35788999999999998754 555555554443
No 88
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=9.3e-30 Score=251.14 Aligned_cols=295 Identities=20% Similarity=0.173 Sum_probs=193.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC--CceEEEEEcCCC
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI--SLRCAVLVGGVD 85 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~--~i~~~~~~~~~~ 85 (401)
++..+|+.||||+|||.+++.++. .+.... ...+++|..||+++++|+++++.++.... ...+...||...
T Consensus 300 ~pgl~ileApTGsGKTEAAL~~A~-~l~~~~------~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~ 372 (878)
T PRK09694 300 QPGLTIIEAPTGSGKTEAALAYAW-RLIDQG------LADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSR 372 (878)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHH-HHHHhC------CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcch
Confidence 456799999999999999876544 343322 34679999999999999999988643221 245667776543
Q ss_pred hHHHH---------------------HHhC---C---CCCEEEECchHHHHHHhcCCCCCCCCc----cEEEEcchhhcc
Q 015759 86 MMQQT---------------------LALG---K---RPHIVVATPGRLMDHLTNTKGFSLGTL----KYLVLDEADRLL 134 (401)
Q Consensus 86 ~~~~~---------------------~~~~---~---~~~Iii~T~~~l~~~~~~~~~~~~~~~----~~iIiDE~h~~~ 134 (401)
..... ..+. + -.+|+|||.++++......+...+..+ ++|||||+|.+
T Consensus 373 l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy- 451 (878)
T PRK09694 373 FNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY- 451 (878)
T ss_pred hhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-
Confidence 21100 0010 1 268999999999865554332222223 48999999954
Q ss_pred ccccHHHHHHHHHhCC-CCceEEEEeecCchHHHHHHHHhcCCC----------eEEEecc---cccccc------cceE
Q 015759 135 NDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRACLKNP----------VKIEAAS---KYSTVD------TLKQ 194 (401)
Q Consensus 135 ~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~----------~~~~~~~---~~~~~~------~~~~ 194 (401)
+......+..++..+. ....+++||||+|..........+... ....... ...... ....
T Consensus 452 D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~ 531 (878)
T PRK09694 452 DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARF 531 (878)
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcce
Confidence 5444455666665543 345699999999987765433321110 0000000 000000 0111
Q ss_pred EE--EEc--CC-CChhHHHHHHHHh-cCCCCEEEEecchHHHHHHHHHHHhcC---CceEeecCCCCHHHH----HHHHh
Q 015759 195 QY--RFV--PA-KYKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNLG---QRAIPISGHMSQSKR----LGALN 261 (401)
Q Consensus 195 ~~--~~~--~~-~~~~~~l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r----~~~~~ 261 (401)
.+ ... .. ......+..++.. ..+++++|||||++.|+.+++.|++.+ ..+..+|+.++..+| .++++
T Consensus 532 ~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~ 611 (878)
T PRK09694 532 TIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIE 611 (878)
T ss_pred EEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 11 111 11 1122334444443 357789999999999999999999865 579999999999999 45677
Q ss_pred hc-cCCC---ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 262 KF-KAGE---CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 262 ~f-~~~~---~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
.| ++|+ ..|||||++++.|+|+ +++++|....| .+.++||+||++|.+.
T Consensus 612 ~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 612 NFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 88 5565 4799999999999999 68999988777 6789999999999875
No 89
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=222.84 Aligned_cols=307 Identities=21% Similarity=0.254 Sum_probs=224.5
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
.+.+.|+++++..|||.||+++|.+|++. ....+||+||..+|++...-.+++++ +....+...
T Consensus 104 n~~ma~ed~~lil~tgggkslcyqlpal~------------adg~alvi~plislmedqil~lkqlg----i~as~lnan 167 (695)
T KOG0353|consen 104 NATMAGEDAFLILPTGGGKSLCYQLPALC------------ADGFALVICPLISLMEDQILQLKQLG----IDASMLNAN 167 (695)
T ss_pred hhhhccCceEEEEeCCCccchhhhhhHHh------------cCCceEeechhHHHHHHHHHHHHHhC----cchhhccCc
Confidence 35678999999999999999999999886 45568999999999999999998875 444444433
Q ss_pred CChHH---HHHHh---CCCCCEEEECchHHHHHHhc----CCCCCCCCccEEEEcchhhcccc--ccHHHHHH--HHHhC
Q 015759 84 VDMMQ---QTLAL---GKRPHIVVATPGRLMDHLTN----TKGFSLGTLKYLVLDEADRLLND--DFEKSLDE--ILNVI 149 (401)
Q Consensus 84 ~~~~~---~~~~~---~~~~~Iii~T~~~l~~~~~~----~~~~~~~~~~~iIiDE~h~~~~~--~~~~~~~~--i~~~~ 149 (401)
.+..+ -.... ..+..+++.||+++...-.. .+.+....+.+|-+||+|+...+ .|++.+.. ++.+.
T Consensus 168 sske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq 247 (695)
T KOG0353|consen 168 SSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ 247 (695)
T ss_pred ccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh
Confidence 33221 11111 22567999999987442211 11245677899999999988764 45555443 34443
Q ss_pred CCCceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC--ChhHHHHHHHH-hcCCCCEEEEecc
Q 015759 150 PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK--YKDCYLVYILT-EVSASSTMVFTRT 226 (401)
Q Consensus 150 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~-~~~~~~~ivf~~~ 226 (401)
-+..+++++|||.+..+.......+.-...+..... ...+++.-....-|.. .-.+.+..+++ ...+...||||-+
T Consensus 248 f~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~-fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~s 326 (695)
T KOG0353|consen 248 FKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG-FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFS 326 (695)
T ss_pred CCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEec
Confidence 345569999999988776655554432211111111 1122222222222222 22233333333 4577889999999
Q ss_pred hHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHH---
Q 015759 227 CDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH--- 303 (401)
Q Consensus 227 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q--- 303 (401)
++.++.++..|+.+|+....+|..|.+.+|..+-+.|..|++.|+|+|-++++|||-|+++.||+...|.|.+.|.|
T Consensus 327 q~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasa 406 (695)
T KOG0353|consen 327 QKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASA 406 (695)
T ss_pred cccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------------------HhhhcccCCCCceEEEEeccccHH
Q 015759 304 ----------------------------------------RVGRTARAGRTGVAISLVNQYELE 327 (401)
Q Consensus 304 ----------------------------------------~~GR~~R~g~~g~~i~~~~~~~~~ 327 (401)
-.||+||.+.+..|++++.-.|..
T Consensus 407 rillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 407 RILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred HHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 569999999999999998755543
No 90
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.5e-28 Score=236.72 Aligned_cols=300 Identities=18% Similarity=0.191 Sum_probs=218.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 91 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 91 (401)
-|..+.||+|||+++.+|++..++ .+..+-+++|+..||.|-++++..+...+|+++..+.++.+......
T Consensus 96 ~iaEm~TGEGKTLvA~l~a~l~al---------~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~ 166 (796)
T PRK12906 96 NIAEMKTGEGKTLTATLPVYLNAL---------TGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRA 166 (796)
T ss_pred CcccccCCCCCcHHHHHHHHHHHH---------cCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHH
Confidence 389999999999999998888877 67789999999999999999999999999999999998877665554
Q ss_pred HhCCCCCEEEECchHHH-HHHhcCC-----CCCCCCccEEEEcchhhccccc----------------cHHHHHHHHHhC
Q 015759 92 ALGKRPHIVVATPGRLM-DHLTNTK-----GFSLGTLKYLVLDEADRLLNDD----------------FEKSLDEILNVI 149 (401)
Q Consensus 92 ~~~~~~~Iii~T~~~l~-~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~----------------~~~~~~~i~~~~ 149 (401)
.. .++|+++|...|- +++...- ......+.+.||||+|.++=.. ....+..+...+
T Consensus 167 ~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l 244 (796)
T PRK12906 167 AY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTL 244 (796)
T ss_pred Hh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHH
Confidence 44 5899999988762 3333211 1123567899999999632110 000000110000
Q ss_pred C-------------------------------------------------------------------CC----------
Q 015759 150 P-------------------------------------------------------------------RM---------- 152 (401)
Q Consensus 150 ~-------------------------------------------------------------------~~---------- 152 (401)
. +.
T Consensus 245 ~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V 324 (796)
T PRK12906 245 IKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEV 324 (796)
T ss_pred HhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEE
Confidence 0 00
Q ss_pred ---------------------------------------------------ceEEEEeecCchHHHHHHHHhcCCCeEEE
Q 015759 153 ---------------------------------------------------RQTYLFSATMTKKVKKLQRACLKNPVKIE 181 (401)
Q Consensus 153 ---------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 181 (401)
.++.+||+|......++...+.-....+
T Consensus 325 ~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~I- 403 (796)
T PRK12906 325 LIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITI- 403 (796)
T ss_pred EEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEc-
Confidence 2466777777655555544443332222
Q ss_pred ecccccccccceEEEEEcCCCChhHHHHHHHH--hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHH
Q 015759 182 AASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGA 259 (401)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 259 (401)
+..............+.....|...+...+. +..+.++||||+|+..++.+++.|.+.|+.+..+|+++...++..+
T Consensus 404 -Ptnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii 482 (796)
T PRK12906 404 -PTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEII 482 (796)
T ss_pred -CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHH
Confidence 2211111111111222333445556666664 3478999999999999999999999999999999999998888888
Q ss_pred HhhccCCCceEEEEcCCCCCCCCCC---CCC-----EEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 260 LNKFKAGECNILICTDVASRGLDIP---SVD-----MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 260 ~~~f~~~~~~vLv~T~~~~~Gid~~---~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
...++.|. |+|||+++++|.|++ ++. +||+++.|.|...+.|+.||+||.|.+|.+.++++.+|.
T Consensus 483 ~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 483 MNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccch
Confidence 88888875 999999999999994 788 999999999999999999999999999999999987753
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.3e-28 Score=238.11 Aligned_cols=301 Identities=20% Similarity=0.193 Sum_probs=223.6
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
.-|..++||+|||+++.+|++...+ .+..+-|++||..||.|.++++..+...+++++..+.|+.+...+.
T Consensus 96 G~Iaem~TGeGKTLva~lpa~l~aL---------~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~ 166 (830)
T PRK12904 96 GKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERR 166 (830)
T ss_pred CchhhhhcCCCcHHHHHHHHHHHHH---------cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHH
Confidence 3488999999999999999975544 4445789999999999999999999999999999999998887766
Q ss_pred HHhCCCCCEEEECchHH-HHHHhcCCC-----CCCCCccEEEEcchhhccccc----------------cHHHHHHHHHh
Q 015759 91 LALGKRPHIVVATPGRL-MDHLTNTKG-----FSLGTLKYLVLDEADRLLNDD----------------FEKSLDEILNV 148 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l-~~~~~~~~~-----~~~~~~~~iIiDE~h~~~~~~----------------~~~~~~~i~~~ 148 (401)
... .++|+++||..| .+++..... .....+.++|+||+|.++=.. +...+..+...
T Consensus 167 ~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~ 244 (830)
T PRK12904 167 EAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPT 244 (830)
T ss_pred Hhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHh
Confidence 665 489999999999 888875432 235678999999999733110 11111111111
Q ss_pred CCCC----------------------------------------------------------------------------
Q 015759 149 IPRM---------------------------------------------------------------------------- 152 (401)
Q Consensus 149 ~~~~---------------------------------------------------------------------------- 152 (401)
+...
T Consensus 245 l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~ 324 (830)
T PRK12904 245 LEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRL 324 (830)
T ss_pred cCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcc
Confidence 1000
Q ss_pred -----------------------------------------ceEEEEeecCchHHHHHHHHhcCCCeEEEeccccccccc
Q 015759 153 -----------------------------------------RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDT 191 (401)
Q Consensus 153 -----------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (401)
..+.+||+|......++...+.-+...+......... .
T Consensus 325 ~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~-d 403 (830)
T PRK12904 325 MPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRI-D 403 (830)
T ss_pred CCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeee-e
Confidence 2466777777665555555543333333221111111 1
Q ss_pred ceEEEEEcCCCChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCce
Q 015759 192 LKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 269 (401)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 269 (401)
. ....+.....|...+...+.. ..+.++||||+|+..++.+++.|.+.|+.+..+|++ ..+|+..+..|..+...
T Consensus 404 ~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~ 480 (830)
T PRK12904 404 H-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA 480 (830)
T ss_pred C-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce
Confidence 1 112233344566666666644 578899999999999999999999999999999996 77899999999999999
Q ss_pred EEEEcCCCCCCCCCCCC--------------------------------------CEEEEecCCCChhHHHHHhhhcccC
Q 015759 270 ILICTDVASRGLDIPSV--------------------------------------DMVINYDIPTNSKDYIHRVGRTARA 311 (401)
Q Consensus 270 vLv~T~~~~~Gid~~~~--------------------------------------~~vi~~~~p~s~~~~~Q~~GR~~R~ 311 (401)
|+|||+++++|+|++-- =+||-...|.|..---|..||+||-
T Consensus 481 VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQ 560 (830)
T PRK12904 481 VTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQ 560 (830)
T ss_pred EEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccC
Confidence 99999999999998532 1788888899998899999999999
Q ss_pred CCCceEEEEeccccH
Q 015759 312 GRTGVAISLVNQYEL 326 (401)
Q Consensus 312 g~~g~~i~~~~~~~~ 326 (401)
|.+|.+..+++-+|.
T Consensus 561 GdpGss~f~lSleD~ 575 (830)
T PRK12904 561 GDPGSSRFYLSLEDD 575 (830)
T ss_pred CCCCceeEEEEcCcH
Confidence 999999999887653
No 92
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.4e-27 Score=201.19 Aligned_cols=295 Identities=19% Similarity=0.251 Sum_probs=208.0
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+..+.+.++.|++|-||+|||.. +...++.+++ .|.++.+.+|....+.+++.++++... +..+..++|
T Consensus 110 ~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~--------~G~~vciASPRvDVclEl~~Rlk~aF~--~~~I~~Lyg 178 (441)
T COG4098 110 VQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN--------QGGRVCIASPRVDVCLELYPRLKQAFS--NCDIDLLYG 178 (441)
T ss_pred HHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh--------cCCeEEEecCcccchHHHHHHHHHhhc--cCCeeeEec
Confidence 44567889999999999999986 5556666665 788899999999999999999988654 467788888
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+..... ..+++|+|..+|++.. +.+|++|+||+|.+.-..-......+.........++++|||+
T Consensus 179 ~S~~~f-------r~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp 243 (441)
T COG4098 179 DSDSYF-------RAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATP 243 (441)
T ss_pred CCchhc-------cccEEEEehHHHHHHH--------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCC
Confidence 755432 2679999988887643 3478999999996544333334444555566666799999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChh-------HHHHHHHHh--cCCCCEEEEecchHHHHHH
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD-------CYLVYILTE--VSASSTMVFTRTCDATRLL 233 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~l~~--~~~~~~ivf~~~~~~~~~l 233 (401)
+..++.-..........+ .......+...-.+.+...-.|. ..+...+.. ..+.+++||+++.+..+.+
T Consensus 244 ~k~l~r~~~~g~~~~~kl--p~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~ 321 (441)
T COG4098 244 TKKLERKILKGNLRILKL--PARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQV 321 (441)
T ss_pred hHHHHHHhhhCCeeEeec--chhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHH
Confidence 987776555433322332 22222212222222222221111 123333332 2568999999999999999
Q ss_pred HHHHHhc-CC-ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC--CChhHHHHHhhhcc
Q 015759 234 ALMLRNL-GQ-RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP--TNSKDYIHRVGRTA 309 (401)
Q Consensus 234 ~~~l~~~-~~-~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p--~s~~~~~Q~~GR~~ 309 (401)
+..|++. +. .....|+. +..|.+..+.|++|+..+||+|.++++|+.+|++++.+.-.-. .+.+.++|..||+|
T Consensus 322 a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvG 399 (441)
T COG4098 322 AAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVG 399 (441)
T ss_pred HHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhcc
Confidence 9999553 33 33566665 5678899999999999999999999999999999987753322 67889999999999
Q ss_pred cCCC--CceEEEEeccccHH
Q 015759 310 RAGR--TGVAISLVNQYELE 327 (401)
Q Consensus 310 R~g~--~g~~i~~~~~~~~~ 327 (401)
|.-. .|.+..|...-...
T Consensus 400 Rs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 400 RSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred CCCcCCCCcEEEEeccchHH
Confidence 9753 36776665544433
No 93
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.9e-27 Score=237.01 Aligned_cols=303 Identities=18% Similarity=0.243 Sum_probs=204.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
.+|.++|++..+|.|||+..+. ++..+..... ....+|||||. ++..||.+++.+|... +++..++|....
T Consensus 186 ~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~-----~~gp~LIVvP~-SlL~nW~~Ei~kw~p~--l~v~~~~G~~~e 256 (1033)
T PLN03142 186 ENGINGILADEMGLGKTLQTIS-LLGYLHEYRG-----ITGPHMVVAPK-STLGNWMNEIRRFCPV--LRAVKFHGNPEE 256 (1033)
T ss_pred hcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcC-----CCCCEEEEeCh-HHHHHHHHHHHHHCCC--CceEEEeCCHHH
Confidence 4788999999999999997543 4444432211 33458999996 5779999999999753 677777776543
Q ss_pred HHHH---HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 87 MQQT---LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 87 ~~~~---~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
.... .......+|+|+|++++...... +.-..+++||+||+|++-... ......+..+... ..+++||||.
T Consensus 257 R~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~a~-~RLLLTGTPl 330 (1033)
T PLN03142 257 RAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFSTN-YRLLITGTPL 330 (1033)
T ss_pred HHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCHH--HHHHHHHHHhhcC-cEEEEecCCC
Confidence 2221 11234689999999998765433 223358899999999886633 2344444555433 3689999973
Q ss_pred h-HHHHHHHH---h-------------------------------------------------cCCCe--EEEecccc--
Q 015759 164 K-KVKKLQRA---C-------------------------------------------------LKNPV--KIEAASKY-- 186 (401)
Q Consensus 164 ~-~~~~~~~~---~-------------------------------------------------~~~~~--~~~~~~~~-- 186 (401)
. .+.++... . +.... .+.+....
T Consensus 331 qNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Q 410 (1033)
T PLN03142 331 QNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQ 410 (1033)
T ss_pred CCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHH
Confidence 2 11111000 0 00000 00000000
Q ss_pred ------------------cccc---cc--------eEEE---------------EEcCCCChhHHHHHHHHhc--CCCCE
Q 015759 187 ------------------STVD---TL--------KQQY---------------RFVPAKYKDCYLVYILTEV--SASST 220 (401)
Q Consensus 187 ------------------~~~~---~~--------~~~~---------------~~~~~~~~~~~l~~~l~~~--~~~~~ 220 (401)
.... ++ .+.+ ..+....|...+..++... .+.++
T Consensus 411 k~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KV 490 (1033)
T PLN03142 411 KQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRV 490 (1033)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeE
Confidence 0000 00 0000 0011234555556665543 57899
Q ss_pred EEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCC---CceEEEEcCCCCCCCCCCCCCEEEEecCCCC
Q 015759 221 MVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG---ECNILICTDVASRGLDIPSVDMVINYDIPTN 297 (401)
Q Consensus 221 ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s 297 (401)
|||++.......+.++|...++.++.++|.++..+|..+++.|++. ...+|++|.+++.|||+..+++||+||++|+
T Consensus 491 LIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWN 570 (1033)
T PLN03142 491 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWN 570 (1033)
T ss_pred EeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCC
Confidence 9999999999999999999999999999999999999999999763 2457899999999999999999999999999
Q ss_pred hhHHHHHhhhcccCCCCce--EEEEeccc
Q 015759 298 SKDYIHRVGRTARAGRTGV--AISLVNQY 324 (401)
Q Consensus 298 ~~~~~Q~~GR~~R~g~~g~--~i~~~~~~ 324 (401)
+....|++||++|.|+... ++.++...
T Consensus 571 P~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 571 PQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred hHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999997644 45555544
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=7.2e-27 Score=225.64 Aligned_cols=303 Identities=17% Similarity=0.192 Sum_probs=212.9
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
.+.-|..++||.|||+++.+|++..++ .+..+.||+|+..||.|..+++..+...+++++..+.++.+...
T Consensus 95 ~~G~IaEm~TGEGKTL~a~lp~~l~al---------~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~ 165 (908)
T PRK13107 95 DSNRIAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQE 165 (908)
T ss_pred cCCccccccCCCCchHHHHHHHHHHHh---------cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHH
Confidence 455688999999999999999988776 55569999999999999999999999889999999998877643
Q ss_pred HHHHhCCCCCEEEECchHH-HHHHhcCCCCC-----CCCccEEEEcchhhccccc----------------cHHHHHHHH
Q 015759 89 QTLALGKRPHIVVATPGRL-MDHLTNTKGFS-----LGTLKYLVLDEADRLLNDD----------------FEKSLDEIL 146 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l-~~~~~~~~~~~-----~~~~~~iIiDE~h~~~~~~----------------~~~~~~~i~ 146 (401)
... ...++|+++||+.| .+++...-... ...+.++|+||+|.++-.. ....+..+.
T Consensus 166 r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v 243 (908)
T PRK13107 166 KKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLI 243 (908)
T ss_pred HHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHH
Confidence 322 23689999999999 88777652222 2678899999999754321 001111111
Q ss_pred HhCC--------------------CC------------------------------------------------------
Q 015759 147 NVIP--------------------RM------------------------------------------------------ 152 (401)
Q Consensus 147 ~~~~--------------------~~------------------------------------------------------ 152 (401)
..+. +.
T Consensus 244 ~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d 323 (908)
T PRK13107 244 PNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKD 323 (908)
T ss_pred HHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcC
Confidence 1100 00
Q ss_pred -------------------------------------------------------------ceEEEEeecCchHHHHHHH
Q 015759 153 -------------------------------------------------------------RQTYLFSATMTKKVKKLQR 171 (401)
Q Consensus 153 -------------------------------------------------------------~~~i~~SAT~~~~~~~~~~ 171 (401)
..+.+||+|......++..
T Consensus 324 ~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~ 403 (908)
T PRK13107 324 VDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQH 403 (908)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHH
Confidence 1234444444433333333
Q ss_pred HhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHH--hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecC
Q 015759 172 ACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249 (401)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~ 249 (401)
.+.-+...+......... .... ..+.....|...+..-+. +..+.++||||+|++.++.++..|...++.+..+|+
T Consensus 404 iY~l~Vv~IPTnkp~~R~-d~~d-~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLna 481 (908)
T PRK13107 404 IYGLDTVVVPTNRPMVRK-DMAD-LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNA 481 (908)
T ss_pred HhCCCEEECCCCCCccce-eCCC-cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccC
Confidence 322222222111111111 1111 111112223333333333 347889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCC-------------------------------------CCEEEEe
Q 015759 250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS-------------------------------------VDMVINY 292 (401)
Q Consensus 250 ~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~-------------------------------------~~~vi~~ 292 (401)
+++..++..+.+.|+.|. |+|||+++++|.|+.= -=+||-.
T Consensus 482 k~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgT 559 (908)
T PRK13107 482 KFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGT 559 (908)
T ss_pred cccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEec
Confidence 999999999999999997 9999999999999851 1278888
Q ss_pred cCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 293 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 293 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
..+.|..---|..||+||-|.+|.+..+++-+|.
T Consensus 560 erheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 560 ERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred ccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 8888888889999999999999999999987664
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=4.9e-27 Score=238.45 Aligned_cols=292 Identities=17% Similarity=0.221 Sum_probs=184.2
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
.+++++++|||||||.+++. ++..++... ...++|+++|+.+|+.|+.+.+..+..........+.+....
T Consensus 433 ~r~~Ll~maTGSGKT~tai~-li~~L~~~~------~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L-- 503 (1123)
T PRK11448 433 QREILLAMATGTGKTRTAIA-LMYRLLKAK------RFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGL-- 503 (1123)
T ss_pred cCCeEEEeCCCCCHHHHHHH-HHHHHHhcC------ccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhh--
Confidence 47899999999999988543 455555432 456899999999999999999988743211111111111000
Q ss_pred HHHHhCCCCCEEEECchHHHHHHhcC----CCCCCCCccEEEEcchhhcccc---------------ccHHHHHHHHHhC
Q 015759 89 QTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLND---------------DFEKSLDEILNVI 149 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~~iIiDE~h~~~~~---------------~~~~~~~~i~~~~ 149 (401)
..........|+|+|+++|.+.+... ..+.+..+++||+||||+.... .+...+..++..+
T Consensus 504 ~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF 583 (1123)
T PRK11448 504 EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF 583 (1123)
T ss_pred hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc
Confidence 01111235789999999997765322 1135678999999999985320 1134566666654
Q ss_pred CCCceEEEEeecCchHHHHHHHH--------------hcC---CCeEEEeccccc-----cc---ccceE---EE--EEc
Q 015759 150 PRMRQTYLFSATMTKKVKKLQRA--------------CLK---NPVKIEAASKYS-----TV---DTLKQ---QY--RFV 199 (401)
Q Consensus 150 ~~~~~~i~~SAT~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~-----~~---~~~~~---~~--~~~ 199 (401)
. ...++|||||......+... ++. .|..+....... .. ..+.. .+ ...
T Consensus 584 d--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l 661 (1123)
T PRK11448 584 D--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATL 661 (1123)
T ss_pred C--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccC
Confidence 3 34799999996433221111 011 122222100000 00 00000 00 000
Q ss_pred CCCC--h-------------hHH-HHHH---HHhcCCCCEEEEecchHHHHHHHHHHHhc------C---CceEeecCCC
Q 015759 200 PAKY--K-------------DCY-LVYI---LTEVSASSTMVFTRTCDATRLLALMLRNL------G---QRAIPISGHM 251 (401)
Q Consensus 200 ~~~~--~-------------~~~-l~~~---l~~~~~~~~ivf~~~~~~~~~l~~~l~~~------~---~~~~~~~~~~ 251 (401)
+... . ... +..+ +....++++||||.++++|+.+++.|.+. + ..+..++|+.
T Consensus 662 ~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~ 741 (1123)
T PRK11448 662 EDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSI 741 (1123)
T ss_pred cHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCc
Confidence 1000 0 000 1111 12224579999999999999999887763 1 2456688887
Q ss_pred CHHHHHHHHhhccCCCc-eEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 252 SQSKRLGALNKFKAGEC-NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 252 ~~~~r~~~~~~f~~~~~-~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
+ ++..++++|+++.. .|+|+++++.+|+|+|.+++||+++++.|...|.|++||+.|...
T Consensus 742 ~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 742 D--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred c--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 5 46789999999876 689999999999999999999999999999999999999999753
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=226.57 Aligned_cols=301 Identities=18% Similarity=0.194 Sum_probs=215.8
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+.++..|.+++|.|+|.+|||+++-.++...-. ...+++|-+|-++|.+|-++.+++-....+ .++|
T Consensus 306 i~~lerg~SVFVAAHTSAGKTvVAEYAialaq~---------h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTG 372 (1248)
T KOG0947|consen 306 IYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK---------HMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTG 372 (1248)
T ss_pred HHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh---------hccceEecchhhhhccchHHHHHHhccccc----eeec
Confidence 346789999999999999999986554433322 677899999999999999999988655433 6777
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.... .++.++|+|-+.|.+.+-++.. -..++..|||||+|.+.+...+-.+++++-.+|++.++|++|||.
T Consensus 373 Dvqin-------PeAsCLIMTTEILRsMLYrgad-liRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 373 DVQIN-------PEASCLIMTTEILRSMLYRGAD-LIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred ceeeC-------CCcceEeehHHHHHHHHhcccc-hhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 64432 3578999999999998887664 467899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcC------------------------------------------
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP------------------------------------------ 200 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 200 (401)
|+..+-.-...--+...+.+......+-.+.+++..-.
T Consensus 445 PN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~r 524 (1248)
T KOG0947|consen 445 PNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGR 524 (1248)
T ss_pred CChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccc
Confidence 87644322211111111111111001111111100000
Q ss_pred ---------------------C--CChhHHHHHH---HHhcCCCCEEEEecchHHHHHHHHHHHhc--------------
Q 015759 201 ---------------------A--KYKDCYLVYI---LTEVSASSTMVFTRTCDATRLLALMLRNL-------------- 240 (401)
Q Consensus 201 ---------------------~--~~~~~~l~~~---l~~~~~~~~ivf~~~~~~~~~l~~~l~~~-------------- 240 (401)
. ..+......+ +....--+++|||-+++.|++.+++|...
T Consensus 525 gs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lf 604 (1248)
T KOG0947|consen 525 GSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLF 604 (1248)
T ss_pred cccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHH
Confidence 0 0000112222 23334568999999999999999999643
Q ss_pred -------------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEec--
Q 015759 241 -------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD-- 293 (401)
Q Consensus 241 -------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~-- 293 (401)
...++++||++-+--++-+.-.|+.|-++||+||..+++|+|+|.-.+|+.--
T Consensus 605 l~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~K 684 (1248)
T KOG0947|consen 605 LSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRK 684 (1248)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhh
Confidence 22477899999999989999999999999999999999999998776666311
Q ss_pred ------CCCChhHHHHHhhhcccCCCC--ceEEEEeccc
Q 015759 294 ------IPTNSKDYIHRVGRTARAGRT--GVAISLVNQY 324 (401)
Q Consensus 294 ------~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~ 324 (401)
.-..+.+|.|++|||||.|-+ |.+++++...
T Consensus 685 hDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 685 HDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 114688999999999999954 7777766543
No 97
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.5e-26 Score=220.47 Aligned_cols=121 Identities=22% Similarity=0.267 Sum_probs=103.8
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++.++.+++++..++||+|||++|++|++..++. +..++||+||++||.|.++++..+...+++++..+.
T Consensus 100 ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 100 ILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred HhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh---------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 46888899999999999999999999999988763 224889999999999999999999988899999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHH-HHHHhcCCCCCCC-------CccEEEEcchhhcc
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTKGFSLG-------TLKYLVLDEADRLL 134 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~~~~~~-------~~~~iIiDE~h~~~ 134 (401)
||.+...+...+ .++|+|+||++| .+++.... +.++ .+.++|+||||.++
T Consensus 171 GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~-~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 171 SGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNS-IATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCC-CCcCHHHhhcccccEEEEechhhhh
Confidence 999887776555 499999999999 99888753 2333 56899999999754
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.3e-27 Score=220.88 Aligned_cols=295 Identities=19% Similarity=0.219 Sum_probs=217.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+.++.+++|.|+|.+|||.++-.++...+- ...+++|-+|-++|.+|-++++..-... +...+|+.+
T Consensus 141 idr~eSVLVSAHTSAGKTVVAeYAIA~sLr---------~kQRVIYTSPIKALSNQKYREl~~EF~D----VGLMTGDVT 207 (1041)
T KOG0948|consen 141 IDRGESVLVSAHTSAGKTVVAEYAIAMSLR---------EKQRVIYTSPIKALSNQKYRELLEEFKD----VGLMTGDVT 207 (1041)
T ss_pred hcCCceEEEEeecCCCcchHHHHHHHHHHH---------hcCeEEeeChhhhhcchhHHHHHHHhcc----cceeeccee
Confidence 568899999999999999987776555544 5668999999999999999998875544 344566544
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
.. ..+..+|+|.+.|...+-++.. -+..+..||+||+|.|-+...+-.|+.-+-.+|.+.+.+++|||+|+.
T Consensus 208 In-------P~ASCLVMTTEILRsMLYRGSE-vmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATiPNA 279 (1041)
T KOG0948|consen 208 IN-------PDASCLVMTTEILRSMLYRGSE-VMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATIPNA 279 (1041)
T ss_pred eC-------CCCceeeeHHHHHHHHHhccch-HhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccCCCH
Confidence 32 2477999999999988877654 578899999999999999999989999888999999999999999876
Q ss_pred HHH--HHHHhcCCCeEEEecccccccccceEE---------EEEcCCCC-------------------------------
Q 015759 166 VKK--LQRACLKNPVKIEAASKYSTVDTLKQQ---------YRFVPAKY------------------------------- 203 (401)
Q Consensus 166 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~------------------------------- 203 (401)
.+- .....-..|..+... ++.+-.++++ |..++.+.
T Consensus 280 ~qFAeWI~~ihkQPcHVVYT--dyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~ 357 (1041)
T KOG0948|consen 280 RQFAEWICHIHKQPCHVVYT--DYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGR 357 (1041)
T ss_pred HHHHHHHHHHhcCCceEEee--cCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccc
Confidence 443 222233333322211 1222222222 12222111
Q ss_pred ------------hhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhc-------------------------------
Q 015759 204 ------------KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL------------------------------- 240 (401)
Q Consensus 204 ------------~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~------------------------------- 240 (401)
....+...+-.....++|||+-++++|+.+|-.+.+.
T Consensus 358 kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPq 437 (1041)
T KOG0948|consen 358 KGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQ 437 (1041)
T ss_pred cCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchH
Confidence 0112222333445678999999999999999887653
Q ss_pred --------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC--------CChhHHHHH
Q 015759 241 --------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP--------TNSKDYIHR 304 (401)
Q Consensus 241 --------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p--------~s~~~~~Q~ 304 (401)
...+.++|+++-+--++-+.-.|+.|-+++|.||..++.|+|+|.-++|+..-.- .|..+|+|+
T Consensus 438 ie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQM 517 (1041)
T KOG0948|consen 438 IENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQM 517 (1041)
T ss_pred HHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEe
Confidence 2246789999999888888889999999999999999999999987777642211 366799999
Q ss_pred hhhcccCCCC--ceEEEEecc
Q 015759 305 VGRTARAGRT--GVAISLVNQ 323 (401)
Q Consensus 305 ~GR~~R~g~~--g~~i~~~~~ 323 (401)
.|||||.|.+ |.||+++++
T Consensus 518 SGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 518 SGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred cccccccCCCCCceEEEEecC
Confidence 9999999954 888888874
No 99
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=1.8e-26 Score=195.99 Aligned_cols=173 Identities=50% Similarity=0.743 Sum_probs=151.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.+|+|+++.+|||+|||++|++|+++.+..... ..+++++|++|+++|+.|+.+.++.+....++.+..++|
T Consensus 30 ~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~----~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 105 (203)
T cd00268 30 IPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK----KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYG 105 (203)
T ss_pred HHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc----cCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEEC
Confidence 4566789999999999999999999999998876520 156789999999999999999999998777889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+..+++|+|+||+++.+.+.... ..+.+++++|+||+|.+.+.++...+..+.+.+++.+|++++|||+
T Consensus 106 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~ 184 (203)
T cd00268 106 GTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK-LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATM 184 (203)
T ss_pred CCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC-CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccC
Confidence 988777666666679999999999999887755 5788999999999999988889999999999999899999999999
Q ss_pred chHHHHHHHHhcCCCeEE
Q 015759 163 TKKVKKLQRACLKNPVKI 180 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (401)
++....+...++.++..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 185 PKEVRDLARKFLRNPVRI 202 (203)
T ss_pred CHHHHHHHHHHCCCCEEe
Confidence 999999998888887664
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.8e-26 Score=226.13 Aligned_cols=300 Identities=19% Similarity=0.219 Sum_probs=215.8
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
.+..|.+++++||||+|||.+.-.++...+. .+.+++|.+|.++|.+|.++.+........-.+..++|+.
T Consensus 130 ~Ler~esVlV~ApTssGKTvVaeyAi~~al~---------~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv 200 (1041)
T COG4581 130 ILERGESVLVCAPTSSGKTVVAEYAIALALR---------DGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDV 200 (1041)
T ss_pred HHhCCCcEEEEccCCCCcchHHHHHHHHHHH---------cCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecce
Confidence 5778999999999999999987665555544 5666999999999999999988764432211245566664
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
+.. ..+.++|+|-+.|.+.+.... ..+..+..||+||+|.+.+...+..++.++-.+|+..+++++|||.++
T Consensus 201 ~IN-------~~A~clvMTTEILRnMlyrg~-~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N 272 (1041)
T COG4581 201 SIN-------PDAPCLVMTTEILRNMLYRGS-ESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATVPN 272 (1041)
T ss_pred eeC-------CCCceEEeeHHHHHHHhccCc-ccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCCCC
Confidence 432 357899999999988887764 468899999999999999999999999999999999999999999976
Q ss_pred HHHH--HHHHhcCCCeEEEecccccccccceEEEE-------EcCCCCh-------------------------------
Q 015759 165 KVKK--LQRACLKNPVKIEAASKYSTVDTLKQQYR-------FVPAKYK------------------------------- 204 (401)
Q Consensus 165 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~------------------------------- 204 (401)
..+- .+...-..+..+.... ..+..+.+++. .++...+
T Consensus 273 ~~EF~~Wi~~~~~~~~~vv~t~--~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 350 (1041)
T COG4581 273 AEEFAEWIQRVHSQPIHVVSTE--HRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRY 350 (1041)
T ss_pred HHHHHHHHHhccCCCeEEEeec--CCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccc
Confidence 5432 2222222222222111 11111211111 1111110
Q ss_pred ----------------hHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhc----------------------------
Q 015759 205 ----------------DCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL---------------------------- 240 (401)
Q Consensus 205 ----------------~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~---------------------------- 240 (401)
...+...+...+.-++|+|+-++..|+.++..+...
T Consensus 351 a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~ 430 (1041)
T COG4581 351 ARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDR 430 (1041)
T ss_pred cccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhh
Confidence 011223333345668999999999999888777521
Q ss_pred CC-------------ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEE----ec----CCCChh
Q 015759 241 GQ-------------RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YD----IPTNSK 299 (401)
Q Consensus 241 ~~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~----~~----~p~s~~ 299 (401)
+. .+.++|++|=+..|..+...|+.|-.+|+++|.+++.|+|+|.-++|+- +| .+.++.
T Consensus 431 ~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~g 510 (1041)
T COG4581 431 ELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPG 510 (1041)
T ss_pred cCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChh
Confidence 11 2458899999999999999999999999999999999999987776652 22 335789
Q ss_pred HHHHHhhhcccCCCC--ceEEEEecc
Q 015759 300 DYIHRVGRTARAGRT--GVAISLVNQ 323 (401)
Q Consensus 300 ~~~Q~~GR~~R~g~~--g~~i~~~~~ 323 (401)
+|.|..||+||.|.+ |.++++..+
T Consensus 511 Ey~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 511 EYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHhhhhhccccccccceEEEecCC
Confidence 999999999999965 777777443
No 101
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=2.3e-25 Score=206.89 Aligned_cols=304 Identities=20% Similarity=0.263 Sum_probs=217.3
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
...+|-|+|+...+|.|||+.. ++++.++..... .....||+||...| ..|.+++++|.. ++++..++|+.
T Consensus 182 l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~-----~~GPfLVi~P~StL-~NW~~Ef~rf~P--~l~~~~~~Gdk 252 (971)
T KOG0385|consen 182 LYENGINGILADEMGLGKTLQT-ISLLGYLKGRKG-----IPGPFLVIAPKSTL-DNWMNEFKRFTP--SLNVVVYHGDK 252 (971)
T ss_pred HHhcCcccEeehhcccchHHHH-HHHHHHHHHhcC-----CCCCeEEEeeHhhH-HHHHHHHHHhCC--CcceEEEeCCH
Confidence 4567889999999999999873 445555554221 23347999998877 889999999986 48889999986
Q ss_pred ChHH---HHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 85 DMMQ---QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 85 ~~~~---~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
.... +........+|+|+|+++.++--.- +.--.+.++||||+|++-+.. ..+..+++.+.... .+++|+|
T Consensus 253 ~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~~n-rLLlTGT 326 (971)
T KOG0385|consen 253 EERAALRRDIMLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKTDN-RLLLTGT 326 (971)
T ss_pred HHHHHHHHHhhccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhhhcchh--hHHHHHHHHhcccc-eeEeeCC
Confidence 4332 2222334789999999998664222 334468999999999987643 34445555554333 5778888
Q ss_pred CchH-HHH------------------------------------------------------------------------
Q 015759 162 MTKK-VKK------------------------------------------------------------------------ 168 (401)
Q Consensus 162 ~~~~-~~~------------------------------------------------------------------------ 168 (401)
|..+ +.+
T Consensus 327 PLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~ 406 (971)
T KOG0385|consen 327 PLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSS 406 (971)
T ss_pred cccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchH
Confidence 4211 100
Q ss_pred ---------------------------------HHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhc
Q 015759 169 ---------------------------------LQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV 215 (401)
Q Consensus 169 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 215 (401)
..+..+.+|..+...... ......-..+....|...+..++...
T Consensus 407 mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg---~pyttdehLv~nSGKm~vLDkLL~~L 483 (971)
T KOG0385|consen 407 MQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG---PPYTTDEHLVTNSGKMLVLDKLLPKL 483 (971)
T ss_pred HHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC---CCCCcchHHHhcCcceehHHHHHHHH
Confidence 011112223222221111 11111122333456777777777654
Q ss_pred --CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCC---ceEEEEcCCCCCCCCCCCCCEEE
Q 015759 216 --SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE---CNILICTDVASRGLDIPSVDMVI 290 (401)
Q Consensus 216 --~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vLv~T~~~~~Gid~~~~~~vi 290 (401)
.+++||||.+.....+.+.+++.-.++..+.+.|.++.++|...++.|.... .-+|++|.+++.|||+..+++||
T Consensus 484 k~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI 563 (971)
T KOG0385|consen 484 KEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI 563 (971)
T ss_pred HhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE
Confidence 7899999999999999999999999999999999999999999999998744 34789999999999999999999
Q ss_pred EecCCCChhHHHHHhhhcccCCCC--ceEEEEeccccH
Q 015759 291 NYDIPTNSKDYIHRVGRTARAGRT--GVAISLVNQYEL 326 (401)
Q Consensus 291 ~~~~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~~~ 326 (401)
.||..|+|..-+|+..||+|.|+. ..++.++.+...
T Consensus 564 lyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 564 LYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred EecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 999999999999999999999975 455666766543
No 102
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=3.4e-25 Score=215.84 Aligned_cols=301 Identities=22% Similarity=0.282 Sum_probs=215.1
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH-hccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~-~~~~~~i~~~~~ 80 (401)
|+.++.+.+-++|.||||||||+..-..+++.... .+..+.+.-|.|--|..+++++.+ ++...|-.|.+-
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--------~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~ 129 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--------IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYS 129 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--------cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEE
Confidence 45567788999999999999999755544443321 456789999999888888877765 444444334333
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhh-ccccccH-HHHHHHHHhCCCCceEEEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFE-KSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~-~~~~~i~~~~~~~~~~i~~ 158 (401)
..-.+ .......|-++|.+.|++.+..++ .++.+++||+||+|+ .++..+. -.+..++..++..-++|.|
T Consensus 130 iRfe~------~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 130 IRFES------KVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred EEeec------cCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 22111 122357899999999999999876 588999999999994 2332222 2344556666656779999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcC-CCC-hhHHHHHH---HHhcCCCCEEEEecchHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP-AKY-KDCYLVYI---LTEVSASSTMVFTRTCDATRLL 233 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~---l~~~~~~~~ivf~~~~~~~~~l 233 (401)
|||+..+ .+ ..++.+...+.+....++ +...|.... .++ -...+... ......+.+|||.+...+.+..
T Consensus 202 SATld~~--rf-s~~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 202 SATLDAE--RF-SAYFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred ecccCHH--HH-HHHcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 9999763 33 444554555555544433 233342222 222 22222222 2334688999999999999999
Q ss_pred HHHHHh----cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC--------------
Q 015759 234 ALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-------------- 295 (401)
Q Consensus 234 ~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p-------------- 295 (401)
++.|.+ ....++.+||.++.+++.++++--..|..+|++||++++.++.+|++.+||.-+.-
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999998 35789999999999999998887777877799999999999999999999974422
Q ss_pred ----CChhHHHHHhhhcccCCCCceEEEEecccc
Q 015759 296 ----TNSKDYIHRVGRTARAGRTGVAISLVNQYE 325 (401)
Q Consensus 296 ----~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 325 (401)
-|-++.-||.|||||.+ +|.||-+++.++
T Consensus 356 ~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~ 388 (845)
T COG1643 356 ETEPISKASADQRAGRAGRTG-PGICYRLYSEED 388 (845)
T ss_pred eEEEechhhhhhhccccccCC-CceEEEecCHHH
Confidence 35567889999999976 899999998754
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=1e-25 Score=223.09 Aligned_cols=306 Identities=19% Similarity=0.173 Sum_probs=199.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
.+++.||||+|||.+.+.++........ ....+++++.|+++++++++++++++....++.....+|........
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~-----~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~ 290 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKI-----KLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLL 290 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhccc-----cccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhh
Confidence 7899999999999999888877766521 15678999999999999999999987655433333234433221111
Q ss_pred HH--------------hCCCCCEEEECchHHHHHHhcCCCCC-C--CCccEEEEcchhhccccccHHHHHHHHHhCC-CC
Q 015759 91 LA--------------LGKRPHIVVATPGRLMDHLTNTKGFS-L--GTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RM 152 (401)
Q Consensus 91 ~~--------------~~~~~~Iii~T~~~l~~~~~~~~~~~-~--~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~ 152 (401)
.. ...-..+.++||............+. + -..+++|+||+|.+.+......+..++..+. ..
T Consensus 291 ~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g 370 (733)
T COG1203 291 EPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAG 370 (733)
T ss_pred ccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCC
Confidence 11 00022345555555444222211111 0 1236899999997666533333333333332 34
Q ss_pred ceEEEEeecCchHHHHHHHHhcCCCeEEEecccccc---cccceEE-EEEcCCCChhHHHHHH-HHhcCCCCEEEEecch
Q 015759 153 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYST---VDTLKQQ-YRFVPAKYKDCYLVYI-LTEVSASSTMVFTRTC 227 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~l~~~-l~~~~~~~~ivf~~~~ 227 (401)
..++++|||+|+...+.................... ....... ................ .....+.+++|.|||+
T Consensus 371 ~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV 450 (733)
T COG1203 371 VPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTV 450 (733)
T ss_pred CCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecH
Confidence 569999999999999888887766554443321000 0000000 0000000000111111 1223678999999999
Q ss_pred HHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhcc----CCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHH
Q 015759 228 DATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFK----AGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303 (401)
Q Consensus 228 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q 303 (401)
..|.++++.|+..+..++.+||.+...+|.+.++.+. .+...|+|||++++.|+|+ +.+.+|.= +...+.++|
T Consensus 451 ~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe--~aPidSLIQ 527 (733)
T COG1203 451 DRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITE--LAPIDSLIQ 527 (733)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeec--CCCHHHHHH
Confidence 9999999999998888999999999999988887544 4677899999999999999 68888743 455788999
Q ss_pred HhhhcccCC--CCceEEEEeccc
Q 015759 304 RVGRTARAG--RTGVAISLVNQY 324 (401)
Q Consensus 304 ~~GR~~R~g--~~g~~i~~~~~~ 324 (401)
|+||++|.| ..|.++++...+
T Consensus 528 R~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 528 RAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHhhcccccCCceeEeeccc
Confidence 999999999 567777776544
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=212.92 Aligned_cols=313 Identities=18% Similarity=0.174 Sum_probs=220.8
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.++.++.++|+|..+||+.|||+++-+.++..++. ..+.++.+.|-.+.++.-...+..+....|+.+....
T Consensus 233 s~~~~~e~~nliys~Pts~gktlvaeilml~~~l~--------~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~ 304 (1008)
T KOG0950|consen 233 SLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC--------RRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYA 304 (1008)
T ss_pred cchhhhcccceEEeCCCccchHHHHHHHHHHHHHH--------HhhceeEecceeehhHHHHhhhhhhccccCCcchhhc
Confidence 46778899999999999999999999888888876 5566899999999999999999999888899988888
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHh---cCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC-----CCCc
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLT---NTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-----PRMR 153 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~---~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-----~~~~ 153 (401)
|..+..... ...++.|||.++-..... ... .+..+++||+||.|.+.+.+.+..++.++..+ ....
T Consensus 305 g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g--~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~ 378 (1008)
T KOG0950|consen 305 GRFPPEKRR----KRESVAIATIEKANSLINSLIEQG--RLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSV 378 (1008)
T ss_pred ccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcC--CccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccce
Confidence 765543322 246799999997544333 222 46778999999999999988888877776543 2335
Q ss_pred eEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHH-------------------H-
Q 015759 154 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL-------------------T- 213 (401)
Q Consensus 154 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-------------------~- 213 (401)
|+++||||+++. .+...++.............-...+.......... +...+..+- .
T Consensus 379 ~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~te 455 (1008)
T KOG0950|consen 379 QIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTE 455 (1008)
T ss_pred eEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhh
Confidence 799999999763 22233222111110000000000000000000000 111111111 1
Q ss_pred -hcCCCCEEEEecchHHHHHHHHHHHhc--------------------------------------CCceEeecCCCCHH
Q 015759 214 -EVSASSTMVFTRTCDATRLLALMLRNL--------------------------------------GQRAIPISGHMSQS 254 (401)
Q Consensus 214 -~~~~~~~ivf~~~~~~~~~l~~~l~~~--------------------------------------~~~~~~~~~~~~~~ 254 (401)
...+.++||||++++.|+.++..+... .+.+..+|.+++.+
T Consensus 456 t~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~e 535 (1008)
T KOG0950|consen 456 TAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSE 535 (1008)
T ss_pred hhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccc
Confidence 113456999999999998888655321 44688999999999
Q ss_pred HHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEe---c-CCCChhHHHHHhhhcccCCCC--ceEEEEeccccHHH
Q 015759 255 KRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINY---D-IPTNSKDYIHRVGRTARAGRT--GVAISLVNQYELEW 328 (401)
Q Consensus 255 ~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~---~-~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~~~~~ 328 (401)
+|+.+...|++|-..|+++|+.+..|+|+|..++++-. + ...+..+|.|++|||||+|-+ |.+++++.+.+...
T Consensus 536 ER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 536 EREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred hHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhH
Confidence 99999999999999999999999999999988888742 1 224667999999999999854 88999998888665
Q ss_pred HHH
Q 015759 329 YLQ 331 (401)
Q Consensus 329 ~~~ 331 (401)
+..
T Consensus 616 ~~~ 618 (1008)
T KOG0950|consen 616 VRE 618 (1008)
T ss_pred HHH
Confidence 553
No 105
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4.7e-25 Score=203.33 Aligned_cols=299 Identities=20% Similarity=0.307 Sum_probs=207.9
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHH-HhccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-ALGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~-~~~~~~~i~~~~~ 80 (401)
||.++.+++-+||.|+||||||+..- +.+.+..-. ...++.+.-|.|.-|..++++.. +.+..+|-.+.+.
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQip----QyL~eaG~~----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQIP----QYLAEAGFA----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCccccHh----HHHHhcccc----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 45677788999999999999998733 333332211 22238899999988888877664 3444444333332
Q ss_pred E--cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhc-c-ccccHHHHHHHHHhCCCCceEE
Q 015759 81 V--GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-L-NDDFEKSLDEILNVIPRMRQTY 156 (401)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~-~-~~~~~~~~~~i~~~~~~~~~~i 156 (401)
. .+.+. ....|.++|.++|++.+..++ .+..+++||+||||.= + .+-..-.++.++...+. -.++
T Consensus 131 IRFed~ts--------~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~-LklI 199 (674)
T KOG0922|consen 131 IRFEDSTS--------KDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD-LKLI 199 (674)
T ss_pred EEecccCC--------CceeEEEecchHHHHHHhcCC--ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC-ceEE
Confidence 2 22111 247899999999999988877 5789999999999941 1 11122234444444433 3699
Q ss_pred EEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHH---HHHHhcCCCCEEEEecchHHHHH
Q 015759 157 LFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLV---YILTEVSASSTMVFTRTCDATRL 232 (401)
Q Consensus 157 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~---~~l~~~~~~~~ivf~~~~~~~~~ 232 (401)
.+|||+.. +.+..++.....+.+.....+ +...|..-+. ++-...+. ++....+.+.+|||....++.+.
T Consensus 200 imSATlda---~kfS~yF~~a~i~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~ 273 (674)
T KOG0922|consen 200 IMSATLDA---EKFSEYFNNAPILTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEA 273 (674)
T ss_pred EEeeeecH---HHHHHHhcCCceEeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHH
Confidence 99999974 344455555455555544433 2223333222 22233333 33334577899999999999999
Q ss_pred HHHHHHhc----CC----ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEec--------C--
Q 015759 233 LALMLRNL----GQ----RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD--------I-- 294 (401)
Q Consensus 233 l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~--------~-- 294 (401)
+++.|.+. +. -+..+||.++.+++.++++--..|..+|+++|++++..+.++++.+||.-+ +
T Consensus 274 ~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~ 353 (674)
T KOG0922|consen 274 ACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRT 353 (674)
T ss_pred HHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecccc
Confidence 99988775 21 246789999999999999888889999999999999999999999999633 2
Q ss_pred --------CCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 295 --------PTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 295 --------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
|-|-..-.||.|||||.| +|+|+.+++..+.
T Consensus 354 g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 354 GLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred CccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 346778899999999986 8999999987653
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.3e-25 Score=185.08 Aligned_cols=158 Identities=35% Similarity=0.456 Sum_probs=132.1
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.+|+++++.||||+|||++++++++..+.+. ...++++++|+++|++|..+.+..++...++++..+++
T Consensus 8 ~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 8 IEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-------KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp HHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred HHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-------CCceEEEEeecccccccccccccccccccccccccccc
Confidence 55677899999999999999999999999887753 23389999999999999999999998877889999999
Q ss_pred CCChH-HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCC--CceEEEEe
Q 015759 83 GVDMM-QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--MRQTYLFS 159 (401)
Q Consensus 83 ~~~~~-~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~S 159 (401)
+.... .....+..+++|+|+||++|.+.+..... .+.++++||+||+|.+....+...+..+...+.+ ..+++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred cccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 88755 33344445699999999999999888543 5667999999999998888888888888888743 47899999
Q ss_pred ecCchHHHH
Q 015759 160 ATMTKKVKK 168 (401)
Q Consensus 160 AT~~~~~~~ 168 (401)
||++..++.
T Consensus 160 AT~~~~~~~ 168 (169)
T PF00270_consen 160 ATLPSNVEK 168 (169)
T ss_dssp SSSTHHHHH
T ss_pred eCCChhHhh
Confidence 999966554
No 107
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2e-24 Score=206.97 Aligned_cols=265 Identities=23% Similarity=0.277 Sum_probs=183.4
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCC-ceEEE-EEcC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRCAV-LVGG 83 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~-i~~~~-~~~~ 83 (401)
+..|+++-+.||||.|||+..++ +...+.. .++++++++||..|+.|+++.+.+++...+ ..+.. +|+.
T Consensus 94 ~~rg~SFaiiAPTGvGKTTfg~~-~sl~~a~--------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~ 164 (1187)
T COG1110 94 LVRGKSFAIIAPTGVGKTTFGLL-MSLYLAK--------KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSA 164 (1187)
T ss_pred HHcCCceEEEcCCCCchhHHHHH-HHHHHHh--------cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccc
Confidence 56899999999999999975433 2222222 678999999999999999999999875443 33332 6676
Q ss_pred CChHHHHHH----hCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-----------cHH-------H
Q 015759 84 VDMMQQTLA----LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-----------FEK-------S 141 (401)
Q Consensus 84 ~~~~~~~~~----~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----------~~~-------~ 141 (401)
.+....... .....+|+|+|.+-|...+..-. -.++++|++|++|.++..+ |.. .
T Consensus 165 l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~ 241 (1187)
T COG1110 165 LPTKEKEEALERIESGDFDILITTSQFLSKRFEELS---KLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYE 241 (1187)
T ss_pred cchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHH
Confidence 554443322 23479999999888877666533 2468999999999755432 111 0
Q ss_pred ----------------HHHHHHh--------CCCCceEEEEeecCchHH--HHHHHHhcCCCeEEEecccccccccceEE
Q 015759 142 ----------------LDEILNV--------IPRMRQTYLFSATMTKKV--KKLQRACLKNPVKIEAASKYSTVDTLKQQ 195 (401)
Q Consensus 142 ----------------~~~i~~~--------~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (401)
+.+++.. -.+..+++..|||..+.- ..+....+ .+.+........++.+.
T Consensus 242 ~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLl----gFevG~~~~~LRNIvD~ 317 (1187)
T COG1110 242 LIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELL----GFEVGSGGEGLRNIVDI 317 (1187)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHh----CCccCccchhhhheeee
Confidence 0011110 123357999999985432 12222222 22333333344455555
Q ss_pred EEEcCCCChhHHHHHHHHhcCCCCEEEEecc---hHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEE
Q 015759 196 YRFVPAKYKDCYLVYILTEVSASSTMVFTRT---CDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI 272 (401)
Q Consensus 196 ~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv 272 (401)
|... .....+..+++.... ..|||++. ++.+++++++|+.+|+++..+|+.- ...++.|..|++++||
T Consensus 318 y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~-----~~~le~F~~GeidvLV 388 (1187)
T COG1110 318 YVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK-----EEALEDFEEGEVDVLV 388 (1187)
T ss_pred eccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc-----hhhhhhhccCceeEEE
Confidence 5444 344445556665544 78999999 9999999999999999999998853 6789999999999998
Q ss_pred EcC----CCCCCCCCCC-CCEEEEecCC
Q 015759 273 CTD----VASRGLDIPS-VDMVINYDIP 295 (401)
Q Consensus 273 ~T~----~~~~Gid~~~-~~~vi~~~~p 295 (401)
++. .+-+|+|+|. +.++|+++.|
T Consensus 389 GvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 389 GVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EecccccceeecCCchhheeEEEEecCC
Confidence 854 7899999998 8899999988
No 108
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.4e-23 Score=197.14 Aligned_cols=295 Identities=21% Similarity=0.210 Sum_probs=193.5
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
-+..++.+.||||||.+|+-.+-..+. .++++|+++|..+|..|+.++++... +.++..+|++.+..+
T Consensus 217 ~~~~Ll~GvTGSGKTEvYl~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf~~rF---g~~v~vlHS~Ls~~e 284 (730)
T COG1198 217 FAPFLLDGVTGSGKTEVYLEAIAKVLA---------QGKQVLVLVPEIALTPQLLARFKARF---GAKVAVLHSGLSPGE 284 (730)
T ss_pred ccceeEeCCCCCcHHHHHHHHHHHHHH---------cCCEEEEEeccccchHHHHHHHHHHh---CCChhhhcccCChHH
Confidence 367899999999999998775544443 78899999999999999999999865 468888999877665
Q ss_pred HHHHh----CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhcccc---ccHHHHH--HHHHhCCCCceEEEEe
Q 015759 89 QTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND---DFEKSLD--EILNVIPRMRQTYLFS 159 (401)
Q Consensus 89 ~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~---~~~~~~~--~i~~~~~~~~~~i~~S 159 (401)
....| ..+..|||+|-..+ ..+|.++++||+||-|.-... +.+.... .+...-...+++++-|
T Consensus 285 r~~~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgS 356 (730)
T COG1198 285 RYRVWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGS 356 (730)
T ss_pred HHHHHHHHhcCCceEEEEechhh--------cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEec
Confidence 44443 35789999994443 347899999999999954331 1111111 2222223456799999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC---C----hhHHHHHHHHh-cCCCCEEEEecchHH--
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK---Y----KDCYLVYILTE-VSASSTMVFTRTCDA-- 229 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~l~~~l~~-~~~~~~ivf~~~~~~-- 229 (401)
||++-+-.... ..+....+...............+..+..+ . ....+..+-.. ..++++|+|.|.+..
T Consensus 357 ATPSLES~~~~--~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~ 434 (730)
T COG1198 357 ATPSLESYANA--ESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAP 434 (730)
T ss_pred CCCCHHHHHhh--hcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccc
Confidence 99865433332 222233333333322111222222222221 1 12222222222 256777777775443
Q ss_pred ----------------------------------------------------------HHHHHHHHHhc--CCceEeecC
Q 015759 230 ----------------------------------------------------------TRLLALMLRNL--GQRAIPISG 249 (401)
Q Consensus 230 ----------------------------------------------------------~~~l~~~l~~~--~~~~~~~~~ 249 (401)
++++.+.|++. +..+..+.+
T Consensus 435 ~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~ 514 (730)
T COG1198 435 LLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDS 514 (730)
T ss_pred eeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEcc
Confidence 34555555544 456777777
Q ss_pred CCCHHH--HHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC------------ChhHHHHHhhhcccCCCCc
Q 015759 250 HMSQSK--RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT------------NSKDYIHRVGRTARAGRTG 315 (401)
Q Consensus 250 ~~~~~~--r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~------------s~~~~~Q~~GR~~R~g~~g 315 (401)
+.+... -+..+..|.+|+.+|||.|+++..|.|+|+++.|...|... ....+.|..||+||.+++|
T Consensus 515 Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G 594 (730)
T COG1198 515 DTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPG 594 (730)
T ss_pred ccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCC
Confidence 765533 46778999999999999999999999999999877655432 2235679999999999999
Q ss_pred eEEEEecccc
Q 015759 316 VAISLVNQYE 325 (401)
Q Consensus 316 ~~i~~~~~~~ 325 (401)
.+++-....+
T Consensus 595 ~VvIQT~~P~ 604 (730)
T COG1198 595 EVVIQTYNPD 604 (730)
T ss_pred eEEEEeCCCC
Confidence 9887765444
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=5e-22 Score=200.95 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=87.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCC--EE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD--MV 289 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~--~v 289 (401)
.+++++||+++.+..+.+++.|... ++. ++..+.. ..|.+++++|++++..||++|+.+++|+|+|+.. .|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 5679999999999999999999762 333 3333333 5788999999999999999999999999999855 67
Q ss_pred EEecCCCCh------------------------------hHHHHHhhhcccCCCCceEEEEeccc--cHHHHHHHHHHhC
Q 015759 290 INYDIPTNS------------------------------KDYIHRVGRTARAGRTGVAISLVNQY--ELEWYLQIEKLIG 337 (401)
Q Consensus 290 i~~~~p~s~------------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~~~~~~ 337 (401)
|....|... ..+.|.+||.-|..++.-++++++.. ...+-+.+.+.+.
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 777777421 13469999999988765556666654 3334445555443
No 110
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=1.1e-23 Score=204.69 Aligned_cols=305 Identities=21% Similarity=0.237 Sum_probs=205.7
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
...+++|||+...+|.|||+.- +..+..+..... .....||++|...+ ..|.+++..|. .+++.+++|+.
T Consensus 385 ~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~-----~~gpflvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~ 454 (1373)
T KOG0384|consen 385 SWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQ-----IHGPFLVVVPLSTI-TAWEREFETWT---DMNVIVYHGNL 454 (1373)
T ss_pred HHHhcccceehhhcCCCcchHH-HHHHHHHHHhhh-----ccCCeEEEeehhhh-HHHHHHHHHHh---hhceeeeecch
Confidence 4568999999999999999763 334555544322 22337899998764 67888888886 58899999987
Q ss_pred ChHHHHHHh----CC-----CCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceE
Q 015759 85 DMMQQTLAL----GK-----RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQT 155 (401)
Q Consensus 85 ~~~~~~~~~----~~-----~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 155 (401)
......... .. ..+++++|++.++.-... +.--.+.++++||||++-+..- .+-..+..+.... .
T Consensus 455 ~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~~~--~l~~~l~~f~~~~-r 528 (1373)
T KOG0384|consen 455 ESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKNDES--KLYESLNQFKMNH-R 528 (1373)
T ss_pred hHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCchHH--HHHHHHHHhcccc-e
Confidence 765443332 11 478999999998553332 2333578999999999876331 2222244443322 5
Q ss_pred EEEeecCch-HHHHHHHHhc-CCCe-------------------------------------------------EEEec-
Q 015759 156 YLFSATMTK-KVKKLQRACL-KNPV-------------------------------------------------KIEAA- 183 (401)
Q Consensus 156 i~~SAT~~~-~~~~~~~~~~-~~~~-------------------------------------------------~~~~~- 183 (401)
+++|+||-. ++.++..... ..|. .+.+.
T Consensus 529 llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVel 608 (1373)
T KOG0384|consen 529 LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVEL 608 (1373)
T ss_pred eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeeh
Confidence 788888632 2222221110 0000 00000
Q ss_pred ----------------------ccccccc--cc--------eEEEEEcC-----------------------CCChhHHH
Q 015759 184 ----------------------SKYSTVD--TL--------KQQYRFVP-----------------------AKYKDCYL 208 (401)
Q Consensus 184 ----------------------~~~~~~~--~~--------~~~~~~~~-----------------------~~~~~~~l 208 (401)
.....+. ++ .|.|.+-+ ...|...+
T Consensus 609 s~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLL 688 (1373)
T KOG0384|consen 609 SDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLL 688 (1373)
T ss_pred hHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeH
Confidence 0000000 00 01111111 11122223
Q ss_pred HHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCC---CceEEEEcCCCCCCCCC
Q 015759 209 VYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG---ECNILICTDVASRGLDI 283 (401)
Q Consensus 209 ~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vLv~T~~~~~Gid~ 283 (401)
..+|.. ..+++||||.+.+.....|+++|...+++.-.+.|....+.|+..+..|.+. ...+|+||.+++.|||+
T Consensus 689 DKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINL 768 (1373)
T KOG0384|consen 689 DKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINL 768 (1373)
T ss_pred HHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccc
Confidence 333332 2678999999999999999999999999999999999999999999999873 45689999999999999
Q ss_pred CCCCEEEEecCCCChhHHHHHhhhcccCCCC--ceEEEEecccc
Q 015759 284 PSVDMVINYDIPTNSKDYIHRVGRTARAGRT--GVAISLVNQYE 325 (401)
Q Consensus 284 ~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~~ 325 (401)
..+++||.||..|+|..-+|+..||+|.|+. ..+|.|++...
T Consensus 769 atADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 769 ATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999976 56778887653
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=4.6e-22 Score=195.22 Aligned_cols=284 Identities=19% Similarity=0.187 Sum_probs=168.2
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
++..++++|||||||++++..+ ..+.... ...++|+|+|+.+|..|+.+.+..++... . .+..+...
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la-~~l~~~~------~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~-~-----~~~~s~~~ 329 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAA-RKALELL------KNPKVFFVVDRRELDYQLMKEFQSLQKDC-A-----ERIESIAE 329 (667)
T ss_pred CceeEEEEecCCCccHHHHHHH-HHHHhhc------CCCeEEEEECcHHHHHHHHHHHHhhCCCC-C-----cccCCHHH
Confidence 4689999999999999866533 4443322 56789999999999999999999886321 0 11111111
Q ss_pred HHHHh-CCCCCEEEECchHHHHHHhcC-CCCCCCCc-cEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 89 QTLAL-GKRPHIVVATPGRLMDHLTNT-KGFSLGTL-KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 89 ~~~~~-~~~~~Iii~T~~~l~~~~~~~-~~~~~~~~-~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
....+ .....|+|+|.++|.+.+... ..+..... .+||+||||+.....+. ..+...+|. ...++|||||...
T Consensus 330 L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~---~~l~~~~p~-a~~lGfTaTP~~~ 405 (667)
T TIGR00348 330 LKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA---KNLKKALKN-ASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH---HHHHhhCCC-CcEEEEeCCCccc
Confidence 11222 234789999999997644321 11121112 38999999986543332 233345554 4589999999542
Q ss_pred HHH----HHHHhcCCCeEEEecccccccccc--eEEEEEcCC-----CCh------------------------------
Q 015759 166 VKK----LQRACLKNPVKIEAASKYSTVDTL--KQQYRFVPA-----KYK------------------------------ 204 (401)
Q Consensus 166 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~------------------------------ 204 (401)
... ......+.+... ........+.. .-.|..... ..+
T Consensus 406 ~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (667)
T TIGR00348 406 KDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQK 484 (667)
T ss_pred ccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 111 111001111111 00000000000 000100000 000
Q ss_pred -----------hHHHHHHHHhc------CCCCEEEEecchHHHHHHHHHHHhc-----CCceEeecCCCCHH--------
Q 015759 205 -----------DCYLVYILTEV------SASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQS-------- 254 (401)
Q Consensus 205 -----------~~~l~~~l~~~------~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~-------- 254 (401)
......++.+. .+.+.+|+|.++..|..+++.|.+. +.....+++..+.+
T Consensus 485 ~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~ 564 (667)
T TIGR00348 485 TKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNK 564 (667)
T ss_pred HHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHH
Confidence 00011111111 2489999999999999999988665 23445555543322
Q ss_pred -------------HHHHHHhhccC-CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccC
Q 015759 255 -------------KRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 311 (401)
Q Consensus 255 -------------~r~~~~~~f~~-~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 311 (401)
....++++|++ +..++||+++++.+|+|.|.+++++. |.|.....++|.+||+.|.
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyl-dKplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 565 HIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYL-DKPLKYHGLLQAIARTNRI 634 (667)
T ss_pred HhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEE-eccccccHHHHHHHHhccc
Confidence 12468889976 67899999999999999999999985 5565556789999999994
No 112
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=4.1e-22 Score=193.79 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=109.2
Q ss_pred CChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCC
Q 015759 202 KYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASR 279 (401)
Q Consensus 202 ~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~ 279 (401)
..|...+...+.. ..+.++||||+|++.++.+++.|...|+.+..+|+ .+.+|+..+..|..+...|+|||+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 3455666666643 37889999999999999999999999999999997 5789999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHH
Q 015759 280 GLDIP---SVD-----MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 327 (401)
Q Consensus 280 Gid~~---~~~-----~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 327 (401)
|+|++ .+. +||.++.|.|...|.|++||+||.|.+|.++++++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99998 443 4588999999999999999999999999999999987643
No 113
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1e-21 Score=183.63 Aligned_cols=304 Identities=19% Similarity=0.210 Sum_probs=207.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
-.+++.-|+...+|.|||... +..+..+.+... ....+|||||. .++.||.+++..|... +++.++|+..+
T Consensus 221 ~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k-----~~~paLIVCP~-Tii~qW~~E~~~w~p~--~rv~ilh~t~s 291 (923)
T KOG0387|consen 221 YCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGK-----LTKPALIVCPA-TIIHQWMKEFQTWWPP--FRVFILHGTGS 291 (923)
T ss_pred HhccCCCeecccccCccchhH-HHHHHHHhhccc-----ccCceEEEccH-HHHHHHHHHHHHhCcc--eEEEEEecCCc
Confidence 346677899999999999874 335555554321 33569999995 6889999999999754 78888888665
Q ss_pred h---------HHHHH----HhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCC
Q 015759 86 M---------MQQTL----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM 152 (401)
Q Consensus 86 ~---------~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~ 152 (401)
. ..... .......|+|+|++.+.- .. ..+.-..++++|+||.|++-+++- .+...+..++.
T Consensus 292 ~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~-d~l~~~~W~y~ILDEGH~IrNpns--~islackki~T- 365 (923)
T KOG0387|consen 292 GARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QG-DDLLGILWDYVILDEGHRIRNPNS--KISLACKKIRT- 365 (923)
T ss_pred ccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cC-cccccccccEEEecCcccccCCcc--HHHHHHHhccc-
Confidence 2 11111 122356799999988733 22 223345689999999998776543 22223333332
Q ss_pred ceEEEEeecCch-HHHHH--------------------------------------------------------------
Q 015759 153 RQTYLFSATMTK-KVKKL-------------------------------------------------------------- 169 (401)
Q Consensus 153 ~~~i~~SAT~~~-~~~~~-------------------------------------------------------------- 169 (401)
.+.+++|+||.. .+.++
T Consensus 366 ~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K 445 (923)
T KOG0387|consen 366 VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMK 445 (923)
T ss_pred cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 235566666321 11111
Q ss_pred -----------------------------------------------------HHHhcCCCeEEEecccccccccceEEE
Q 015759 170 -----------------------------------------------------QRACLKNPVKIEAASKYSTVDTLKQQY 196 (401)
Q Consensus 170 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (401)
....|++|..+....+.... ...+
T Consensus 446 ~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~---~~D~ 522 (923)
T KOG0387|consen 446 SDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ---GPDY 522 (923)
T ss_pred HHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccccc---CCCc
Confidence 11112222222211100000 0001
Q ss_pred -EEcCCCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHH-hcCCceEeecCCCCHHHHHHHHhhccCCCc--eE
Q 015759 197 -RFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLR-NLGQRAIPISGHMSQSKRLGALNKFKAGEC--NI 270 (401)
Q Consensus 197 -~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~v 270 (401)
-.+....|...+..++... .+.++++|..++.....+...|. ..|+.+..+.|..+...|..++++|++++. -+
T Consensus 523 ~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VF 602 (923)
T KOG0387|consen 523 EGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVF 602 (923)
T ss_pred CCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEE
Confidence 1122345677777777644 67799999999999999999998 689999999999999999999999998763 36
Q ss_pred EEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCC--ceEEEEeccccHH
Q 015759 271 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT--GVAISLVNQYELE 327 (401)
Q Consensus 271 Lv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~~~~ 327 (401)
|++|.+++.|+|+.+++-||.|||.|+|..-.|..-|+.|.|++ -.+|.+++....+
T Consensus 603 LLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 603 LLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred EEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 89999999999999999999999999999999999999999965 4566677766544
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=1.4e-21 Score=189.52 Aligned_cols=131 Identities=21% Similarity=0.317 Sum_probs=114.2
Q ss_pred ChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCC
Q 015759 203 YKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 280 (401)
Q Consensus 203 ~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~G 280 (401)
.+...+...+.. ..+.+++|||++++.++.+++.|.+.|+.+..+|++++..+|.+++..|+.|++.|||||+.+++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 334444444443 367889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEec-----CCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHH
Q 015759 281 LDIPSVDMVINYD-----IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEK 334 (401)
Q Consensus 281 id~~~~~~vi~~~-----~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~ 334 (401)
+|+|++++|+++| .|.+...|+|++||+||. ..|.++++++..+..+...+.+
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999999988 799999999999999997 5899999999876555554444
No 115
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=7.7e-21 Score=180.01 Aligned_cols=300 Identities=18% Similarity=0.129 Sum_probs=201.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTL 91 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~ 91 (401)
-|..+.||+|||+++.+|++..++ .+..+.+++|+..||.|-++++..+...+++++..+.++.+......
T Consensus 94 ~VaEM~TGEGKTLvA~l~a~l~AL---------~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~ 164 (764)
T PRK12326 94 DVIEMATGEGKTLAGAIAAAGYAL---------QGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRA 164 (764)
T ss_pred CcccccCCCCHHHHHHHHHHHHHH---------cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHH
Confidence 477899999999999998887776 67789999999999999999999998889999999998877665555
Q ss_pred HhCCCCCEEEECchHH-HHHHhcC-----CCCCCCCccEEEEcchhhccccc---------------cHHHHHHHHHhCC
Q 015759 92 ALGKRPHIVVATPGRL-MDHLTNT-----KGFSLGTLKYLVLDEADRLLNDD---------------FEKSLDEILNVIP 150 (401)
Q Consensus 92 ~~~~~~~Iii~T~~~l-~~~~~~~-----~~~~~~~~~~iIiDE~h~~~~~~---------------~~~~~~~i~~~~~ 150 (401)
.. .++|+++|...| .+++... .......+.+.|+||+|.++-.. ....+..+...+.
T Consensus 165 aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~ 242 (764)
T PRK12326 165 AY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLR 242 (764)
T ss_pred HH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcC
Confidence 54 489999998765 2222211 11224568899999999632110 0011111111111
Q ss_pred CC------------------------------------------------------------------------------
Q 015759 151 RM------------------------------------------------------------------------------ 152 (401)
Q Consensus 151 ~~------------------------------------------------------------------------------ 152 (401)
..
T Consensus 243 ~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm 322 (764)
T PRK12326 243 EGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIA 322 (764)
T ss_pred cCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcC
Confidence 00
Q ss_pred ----------------------------------------ceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccc
Q 015759 153 ----------------------------------------RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTL 192 (401)
Q Consensus 153 ----------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (401)
..+.+||+|......++...+.-+...+......... ..
T Consensus 323 ~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~-d~ 401 (764)
T PRK12326 323 QLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIRE-DE 401 (764)
T ss_pred CCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceee-cC
Confidence 2466777776655555555443332222111111111 11
Q ss_pred eEEEEEcCCCChhHHHHHHH-H-hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceE
Q 015759 193 KQQYRFVPAKYKDCYLVYIL-T-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 270 (401)
Q Consensus 193 ~~~~~~~~~~~~~~~l~~~l-~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 270 (401)
.. ..+.....|...+..-+ . +..+.|+||.+.+++..+.+++.|.+.|++..+++......+-.-+-+.=+.| .|
T Consensus 402 ~d-~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~g--aV 478 (764)
T PRK12326 402 AD-RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYG--AV 478 (764)
T ss_pred CC-ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCC--cE
Confidence 11 11222223333333332 2 34789999999999999999999999999999999875544422222222223 59
Q ss_pred EEEcCCCCCCCCCCC---------------CCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 271 LICTDVASRGLDIPS---------------VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 271 Lv~T~~~~~Gid~~~---------------~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
.|||+++++|.|+.- -=+||-...+.|..---|..||+||-|.+|.+..+++-+|.
T Consensus 479 TIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 479 TVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred EEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 999999999999851 12788888999999999999999999999999999887653
No 116
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=4.3e-22 Score=182.53 Aligned_cols=297 Identities=20% Similarity=0.267 Sum_probs=204.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHH-HhccCCCce--EE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-ALGSGISLR--CA 78 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~-~~~~~~~i~--~~ 78 (401)
+|.++..++-+||.|.||||||+..- +.+.+..-.. .++++-+--|.|.-|..++.+.. +++..+|-. +.
T Consensus 273 ll~av~e~QVLiI~GeTGSGKTTQiP----QyL~EaGytk---~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYs 345 (902)
T KOG0923|consen 273 LLKAVKEHQVLIIVGETGSGKTTQIP----QYLYEAGYTK---GGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYS 345 (902)
T ss_pred HHHHHHhCcEEEEEcCCCCCcccccc----HHHHhccccc---CCceEeecCcchHHHHHHHHHHHHHhCcccccccceE
Confidence 45677788899999999999998732 3333322221 56668888999998888876654 344333211 11
Q ss_pred EEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhc-cc-cccHHHHHHHHHhCCCCceEE
Q 015759 79 VLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LN-DDFEKSLDEILNVIPRMRQTY 156 (401)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~-~~-~~~~~~~~~i~~~~~~~~~~i 156 (401)
+-..+.+ ....-+-++|.++|++-+...+ .+..+++|||||||.- +. .-+...+..|.... +.-.++
T Consensus 346 IRFEdcT--------SekTvlKYMTDGmLlREfL~ep--dLasYSViiiDEAHERTL~TDILfgLvKDIar~R-pdLKll 414 (902)
T KOG0923|consen 346 IRFEDCT--------SEKTVLKYMTDGMLLREFLSEP--DLASYSVIIVDEAHERTLHTDILFGLVKDIARFR-PDLKLL 414 (902)
T ss_pred EEecccc--------CcceeeeeecchhHHHHHhccc--cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-CcceEE
Confidence 1111111 1235678999999999888766 6889999999999941 11 22233344444444 345699
Q ss_pred EEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHh---cCCCCEEEEecchHHHHH
Q 015759 157 LFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTE---VSASSTMVFTRTCDATRL 232 (401)
Q Consensus 157 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~---~~~~~~ivf~~~~~~~~~ 232 (401)
+.|||+..+ -+..++.+...+.+....++ +..+|...|+ .+-...+..+++. .+.+.+|||....++.+.
T Consensus 415 IsSAT~DAe---kFS~fFDdapIF~iPGRRyP---Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt 488 (902)
T KOG0923|consen 415 ISSATMDAE---KFSAFFDDAPIFRIPGRRYP---VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIET 488 (902)
T ss_pred eeccccCHH---HHHHhccCCcEEeccCcccc---eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHH
Confidence 999998753 33344444444444444333 3344555554 3444555555543 367889999999888877
Q ss_pred HHHHHHhc---------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEec----------
Q 015759 233 LALMLRNL---------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD---------- 293 (401)
Q Consensus 233 l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~---------- 293 (401)
..+.|.+. .+-++.+|+.++.+.+..+++--.+|-.+|++||++++..+.++++.+||.-+
T Consensus 489 ~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynpr 568 (902)
T KOG0923|consen 489 VKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPR 568 (902)
T ss_pred HHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCC
Confidence 77766553 23478899999999999998888888899999999999999999999999633
Q ss_pred --------CCCChhHHHHHhhhcccCCCCceEEEEecc
Q 015759 294 --------IPTNSKDYIHRVGRTARAGRTGVAISLVNQ 323 (401)
Q Consensus 294 --------~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 323 (401)
.|.|-..-.||.||+||.| +|+|+.+++.
T Consensus 569 tGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 569 TGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred cCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 2345567789999999987 8999999973
No 117
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.89 E-value=1.6e-20 Score=187.37 Aligned_cols=329 Identities=20% Similarity=0.227 Sum_probs=198.8
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH-HHHHHHhccCCCceEEEEEc
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-SEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-~~~l~~~~~~~~i~~~~~~~ 82 (401)
.++.+++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+ .+.+..+...+++++..+.|
T Consensus 259 ~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----------~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~~~~~~~kg 328 (820)
T PRK07246 259 EDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----------DQRQIIVSVPTKILQDQIMAEEVKAIQEVFHIDCHSLKG 328 (820)
T ss_pred HHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----------CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 3567889999999999999999999988643 356799999999999999 46677766666777777776
Q ss_pred CCChH-----------------------------------------------HHHH------------------------
Q 015759 83 GVDMM-----------------------------------------------QQTL------------------------ 91 (401)
Q Consensus 83 ~~~~~-----------------------------------------------~~~~------------------------ 91 (401)
+.++. ..+.
T Consensus 329 ~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~~cf~~~ar 408 (820)
T PRK07246 329 PQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYDYDFWKRSY 408 (820)
T ss_pred CcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcchhhHHHHHH
Confidence 54330 0000
Q ss_pred HhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-----c-------HH-------------------
Q 015759 92 ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-----F-------EK------------------- 140 (401)
Q Consensus 92 ~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~-------~~------------------- 140 (401)
.-...++|+|+++..|...+.... .+...+.+||||||++.+.. . ..
T Consensus 409 ~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 486 (820)
T PRK07246 409 EKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSGPLPLLQKRLLE 486 (820)
T ss_pred HHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 001156899999998888765544 36789999999999754310 0 00
Q ss_pred -------------------------------HHHHH--------HHh---------------------------------
Q 015759 141 -------------------------------SLDEI--------LNV--------------------------------- 148 (401)
Q Consensus 141 -------------------------------~~~~i--------~~~--------------------------------- 148 (401)
.+..+ ...
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~l~~~pl~v~~~ 566 (820)
T PRK07246 487 SISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTYLNSASKAFTHF 566 (820)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeEEEeeeCcHHHH
Confidence 00000 000
Q ss_pred ---CCCCceEEEEeecCc--hHHHHHHHHhcCCCeEEEecccccccccceEEEEEc----CCC---ChhHH---HHHHHH
Q 015759 149 ---IPRMRQTYLFSATMT--KKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFV----PAK---YKDCY---LVYILT 213 (401)
Q Consensus 149 ---~~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~---l~~~l~ 213 (401)
+++...++++|||++ +... +.....-+........ ...-.+....+ +.. ....+ +...+.
T Consensus 567 ~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~----~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~ 641 (820)
T PRK07246 567 SQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE----KDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLE 641 (820)
T ss_pred HHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC----CChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHH
Confidence 001135788888885 3222 3222221111111110 11111112121 211 11111 111111
Q ss_pred --hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCC--CCEE
Q 015759 214 --EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS--VDMV 289 (401)
Q Consensus 214 --~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~--~~~v 289 (401)
...+++++|+++|.+..+.+++.|......+ ...|... .+.+++++|++++..||++|+.+++|+|+|+ ...|
T Consensus 642 ~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~v 718 (820)
T PRK07246 642 ELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIE 718 (820)
T ss_pred HHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEE
Confidence 1357899999999999999999997665444 3334322 2466899999988899999999999999974 4556
Q ss_pred EEecCCCC-h-----------------------------hHHHHHhhhcccCCCCceEEEEeccc--cHHHHHHHHHHhC
Q 015759 290 INYDIPTN-S-----------------------------KDYIHRVGRTARAGRTGVAISLVNQY--ELEWYLQIEKLIG 337 (401)
Q Consensus 290 i~~~~p~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~~~~~~ 337 (401)
|....|.. + -.+.|.+||.-|...+--+++++++. ...+-+.+.+.+.
T Consensus 719 iI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 719 VITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 67776742 1 13469999999987654456666654 3344455555554
Q ss_pred CCCCCCCCCHHHHHH
Q 015759 338 KKLPEFPAEEEEVLL 352 (401)
Q Consensus 338 ~~~~~~~~~~~~~~~ 352 (401)
...+......+++..
T Consensus 799 ~~~~~~~~~~~~~~~ 813 (820)
T PRK07246 799 EEFLISQQNFSDVLV 813 (820)
T ss_pred CCCccccCCHHHHHH
Confidence 433333334444433
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.89 E-value=7.3e-21 Score=171.02 Aligned_cols=166 Identities=22% Similarity=0.261 Sum_probs=124.0
Q ss_pred ceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHH--hcCCCCEEEEecchHHH
Q 015759 153 RQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDAT 230 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~ 230 (401)
+|++++||||.+.-.+.... +.....+.... .+.-....-|......-+..-+. ...+.+++|-+=|++.|
T Consensus 387 ~q~i~VSATPg~~E~e~s~~---~vveQiIRPTG----LlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGG---NVVEQIIRPTG----LLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhccC---ceeEEeecCCC----CCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 58999999997753332221 11111111111 11111222233333333333333 23679999999999999
Q ss_pred HHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC-----CChhHHHHHh
Q 015759 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP-----TNSKDYIHRV 305 (401)
Q Consensus 231 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p-----~s~~~~~Q~~ 305 (401)
+.+.++|.+.|+.+..+|++...-+|.+++..++.|.++|||+.+.+-+|+|+|.+..|..+|.. .|..+++|.+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988855 6888999999
Q ss_pred hhcccCCCCceEEEEeccccH
Q 015759 306 GRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 306 GR~~R~g~~g~~i~~~~~~~~ 326 (401)
|||.|. -.|.++++.+.-..
T Consensus 540 GRAARN-~~GkvIlYAD~iT~ 559 (663)
T COG0556 540 GRAARN-VNGKVILYADKITD 559 (663)
T ss_pred HHHhhc-cCCeEEEEchhhhH
Confidence 999995 47999998875433
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.89 E-value=3.9e-22 Score=188.49 Aligned_cols=285 Identities=19% Similarity=0.228 Sum_probs=184.0
Q ss_pred cccccCCc-cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 3 LWFCDAGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~-~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
++++.+|+ .+|+++.||+|||.+++ .++..+++.. ..+++|+|+-+++|+.|.+..+..+...- -....+.
T Consensus 178 ~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~------~~KRVLFLaDR~~Lv~QA~~af~~~~P~~-~~~n~i~ 249 (875)
T COG4096 178 IEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSG------WVKRVLFLADRNALVDQAYGAFEDFLPFG-TKMNKIE 249 (875)
T ss_pred HHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcc------hhheeeEEechHHHHHHHHHHHHHhCCCc-cceeeee
Confidence 45566664 49999999999999854 4777777765 67889999999999999999988876432 1222222
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcC----CCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEE
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYL 157 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 157 (401)
+.... ..+.|.++|++++....... ..+....+++||+||||+-....+. .++..+... .++
T Consensus 250 ~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~dYFdA~--~~g 315 (875)
T COG4096 250 DKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SILDYFDAA--TQG 315 (875)
T ss_pred cccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHHHHHHHH--HHh
Confidence 21111 14789999999998877654 2245667999999999987655555 444444332 345
Q ss_pred EeecCchHHHHHHHHhc-CCCeEEE------------------ecc----cccccccc--------------eEEEEEcC
Q 015759 158 FSATMTKKVKKLQRACL-KNPVKIE------------------AAS----KYSTVDTL--------------KQQYRFVP 200 (401)
Q Consensus 158 ~SAT~~~~~~~~~~~~~-~~~~~~~------------------~~~----~~~~~~~~--------------~~~~~~~~ 200 (401)
+||||...+..-.-.++ +.|.... +.. ........ .+.+...+
T Consensus 316 LTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d 395 (875)
T COG4096 316 LTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARD 395 (875)
T ss_pred hccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccc
Confidence 59998764443222222 2222111 100 00000000 00000011
Q ss_pred CC------ChhHHHH----HHHHh--cC--CCCEEEEecchHHHHHHHHHHHhc-----CCceEeecCCCCHHHHHHHHh
Q 015759 201 AK------YKDCYLV----YILTE--VS--ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALN 261 (401)
Q Consensus 201 ~~------~~~~~l~----~~l~~--~~--~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~ 261 (401)
.+ .....+. ..+.. .. -+++||||.+..+|+.+.+.|.+. |--+..+.++-... ...+.
T Consensus 396 ~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id 473 (875)
T COG4096 396 FDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALID 473 (875)
T ss_pred cchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHH
Confidence 00 0112222 22222 11 468999999999999999999875 23366666664333 44555
Q ss_pred hccC--CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccC
Q 015759 262 KFKA--GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 311 (401)
Q Consensus 262 ~f~~--~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 311 (401)
.|.. .-.+|.|+.+++..|+|+|.|-.++++..-.|...|.|++||.-|.
T Consensus 474 ~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 474 NFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred HHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 5654 3356999999999999999999999999999999999999999996
No 120
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.89 E-value=1.8e-21 Score=189.22 Aligned_cols=305 Identities=19% Similarity=0.237 Sum_probs=210.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH-hccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~-~~~~~~i~~~~~ 80 (401)
||-++.+.+.++|.|.||+|||+.....+++...... ...++++--|.|.-|..++++... .+...+-.+..-
T Consensus 181 Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYq 254 (924)
T KOG0920|consen 181 ILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG------AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQ 254 (924)
T ss_pred HHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC------CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEE
Confidence 4567788999999999999999986666666655443 556688899999888888887754 333334333333
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhh-ccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
.+-.+ .......+.+||.+.|++.+...+ .+..+..||+||+|. -.+..|-..+...+-...+.-++++||
T Consensus 255 vrl~~------~~s~~t~L~fcTtGvLLr~L~~~~--~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMS 326 (924)
T KOG0920|consen 255 VRLES------KRSRETRLLFCTTGVLLRRLQSDP--TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMS 326 (924)
T ss_pred Eeeec------ccCCceeEEEecHHHHHHHhccCc--ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEee
Confidence 22211 112247799999999999998855 578899999999994 233444444333333334566899999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccc----------------cceEE------------EEEcCCCChhHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVD----------------TLKQQ------------YRFVPAKYKDCYLVYI 211 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~------------~~~~~~~~~~~~l~~~ 211 (401)
||... +....+++....+.+.....+.. ...+. ......+.....+..+
T Consensus 327 AT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~l 403 (924)
T KOG0920|consen 327 ATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDL 403 (924)
T ss_pred eecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHH
Confidence 99873 33344444444443332211110 00000 0011111223333333
Q ss_pred H----HhcCCCCEEEEecchHHHHHHHHHHHhc-------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCC
Q 015759 212 L----TEVSASSTMVFTRTCDATRLLALMLRNL-------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 280 (401)
Q Consensus 212 l----~~~~~~~~ivf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~G 280 (401)
+ .....+.+|||.+...+...+.+.|... ..-+..+|+.|+..+++.+......|..+|+++|++++.+
T Consensus 404 i~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETS 483 (924)
T KOG0920|consen 404 IEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETS 483 (924)
T ss_pred HHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhc
Confidence 3 3345788999999999999999999753 2457889999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE--------ecCCC----------ChhHHHHHhhhcccCCCCceEEEEeccc
Q 015759 281 LDIPSVDMVIN--------YDIPT----------NSKDYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 281 id~~~~~~vi~--------~~~p~----------s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
|.++++-+||. ||+-. |...-.||.||+||. ..|.||.+++..
T Consensus 484 ITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 484 ITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred ccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 99999999996 44332 344567999999997 589999998754
No 121
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=1.3e-20 Score=180.24 Aligned_cols=309 Identities=17% Similarity=0.168 Sum_probs=195.2
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh-
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM- 86 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~- 86 (401)
....||+.-.+|+|||+. +++.++.+++....... .-.+.|||+| ..|+..|++++.+|.....+....+.+....
T Consensus 262 ~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~-~~~k~lVV~P-~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~ 338 (776)
T KOG0390|consen 262 NSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKP-LINKPLVVAP-SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSS 338 (776)
T ss_pred CCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccc-cccccEEEcc-HHHHHHHHHHHHHhccccccceeeeecccchh
Confidence 345699999999999987 45566666664411000 2277999999 5799999999999987556777777777664
Q ss_pred -HHHH--H---HhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 87 -MQQT--L---ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 87 -~~~~--~---~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
.... . ...-...|.+.+++.+.++... +....++++|+||.|++-+.. ..+...+..+.- +..|++|+
T Consensus 339 w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~~--s~~~kaL~~l~t-~rRVLLSG 412 (776)
T KOG0390|consen 339 WIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNSD--SLTLKALSSLKT-PRRVLLTG 412 (776)
T ss_pred hhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccchh--hHHHHHHHhcCC-CceEEeeC
Confidence 1111 1 1111456889999999776655 345678999999999865522 123333333332 33678888
Q ss_pred cCch-HHHHH---------------------------------------------------HHHh---------------
Q 015759 161 TMTK-KVKKL---------------------------------------------------QRAC--------------- 173 (401)
Q Consensus 161 T~~~-~~~~~---------------------------------------------------~~~~--------------- 173 (401)
|+.. ++.++ ...+
T Consensus 413 Tp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~ 492 (776)
T KOG0390|consen 413 TPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPG 492 (776)
T ss_pred CcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCC
Confidence 8421 11111 1111
Q ss_pred --------------------------------------------cCCCeEEEecccccc---c---c------cceEEEE
Q 015759 174 --------------------------------------------LKNPVKIEAASKYST---V---D------TLKQQYR 197 (401)
Q Consensus 174 --------------------------------------------~~~~~~~~~~~~~~~---~---~------~~~~~~~ 197 (401)
+.+|..+........ . . .......
T Consensus 493 k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 572 (776)
T KOG0390|consen 493 KYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAG 572 (776)
T ss_pred ceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccc
Confidence 111111110000000 0 0 0000000
Q ss_pred EcCCCChhHHHHHHHH---hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCc---eEE
Q 015759 198 FVPAKYKDCYLVYILT---EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC---NIL 271 (401)
Q Consensus 198 ~~~~~~~~~~l~~~l~---~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vL 271 (401)
......+...+..++. .....++++..|.....+.+...++-.|+.+..++|.|+..+|+.+++.|++... -.|
T Consensus 573 ~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfL 652 (776)
T KOG0390|consen 573 DGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFL 652 (776)
T ss_pred cchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEE
Confidence 0001122333333332 2233445555666677777777777779999999999999999999999997443 366
Q ss_pred EEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEE--EEecccc
Q 015759 272 ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAI--SLVNQYE 325 (401)
Q Consensus 272 v~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i--~~~~~~~ 325 (401)
.+|-++++||++-+++.||.+|++|+|+.-.|+++|+.|.|++-.|+ .++....
T Consensus 653 lSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 653 LSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred EecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCC
Confidence 78889999999999999999999999999999999999999875554 5555443
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.5e-20 Score=180.78 Aligned_cols=303 Identities=17% Similarity=0.163 Sum_probs=206.8
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
.+.-|..+.||+|||+++.+|++...+ .+..+.+++|+..||.|-++++..+...+++++..+.++.+...
T Consensus 95 h~G~iaEM~TGEGKTLvA~l~a~l~al---------~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~e 165 (913)
T PRK13103 95 HEGKIAEMRTGEGKTLVGTLAVYLNAL---------SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEE 165 (913)
T ss_pred ccCccccccCCCCChHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHH
Confidence 455688999999999999999887766 67789999999999999999999999999999999988877666
Q ss_pred HHHHhCCCCCEEEECchHH-HHHHhcCCC-----CCCCCccEEEEcchhhccccc----------------cH-------
Q 015759 89 QTLALGKRPHIVVATPGRL-MDHLTNTKG-----FSLGTLKYLVLDEADRLLNDD----------------FE------- 139 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l-~~~~~~~~~-----~~~~~~~~iIiDE~h~~~~~~----------------~~------- 139 (401)
....+. ++|+++|..-| .++|...-. .....+.++||||+|.++=+. ..
T Consensus 166 rr~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v 243 (913)
T PRK13103 166 KRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLI 243 (913)
T ss_pred HHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHH
Confidence 555544 89999998876 333332211 123678999999999732100 00
Q ss_pred H------------------------------------HHHHHH-------------------------HhC------CCC
Q 015759 140 K------------------------------------SLDEIL-------------------------NVI------PRM 152 (401)
Q Consensus 140 ~------------------------------------~~~~i~-------------------------~~~------~~~ 152 (401)
. .+..++ ..+ .+.
T Consensus 244 ~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d 323 (913)
T PRK13103 244 PRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRN 323 (913)
T ss_pred HHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0 000000 000 000
Q ss_pred -------------------------------------------------------------ceEEEEeecCchHHHHHHH
Q 015759 153 -------------------------------------------------------------RQTYLFSATMTKKVKKLQR 171 (401)
Q Consensus 153 -------------------------------------------------------------~~~i~~SAT~~~~~~~~~~ 171 (401)
..+.+||+|......++..
T Consensus 324 ~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~ 403 (913)
T PRK13103 324 VEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQ 403 (913)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHH
Confidence 2466777777666555555
Q ss_pred HhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHH--hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecC
Q 015759 172 ACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG 249 (401)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~ 249 (401)
.+.-+...+......... ... ...+.....|...+..-+. +..+.|+||-+.|++..+.+++.|++.|+..-+++.
T Consensus 404 iY~l~Vv~IPTnkP~~R~-D~~-d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNA 481 (913)
T PRK13103 404 IYGLDVVVIPPNKPLARK-DFN-DLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNA 481 (913)
T ss_pred HhCCCEEECCCCCCcccc-cCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhcc
Confidence 544333333222221111 111 1222223334444443333 337899999999999999999999999999888888
Q ss_pred CCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCC-------------------------------------CCCEEEEe
Q 015759 250 HMSQSKRLGALNKFKAGECNILICTDVASRGLDIP-------------------------------------SVDMVINY 292 (401)
Q Consensus 250 ~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~-------------------------------------~~~~vi~~ 292 (401)
.....+-.-+-+.=+.| .|.|||+++++|.|+. +-=+||-.
T Consensus 482 k~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgT 559 (913)
T PRK13103 482 KYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIAS 559 (913)
T ss_pred ccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEee
Confidence 75544433333222223 5999999999999983 11277888
Q ss_pred cCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 293 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 293 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
..+.|..---|..||+||-|.+|.+..+++-+|.
T Consensus 560 erheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 560 ERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred ccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 8899998889999999999999999999887653
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.88 E-value=4.2e-21 Score=186.45 Aligned_cols=306 Identities=17% Similarity=0.185 Sum_probs=198.1
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
+-|+|.++|.|||+..+..+.....+.............||+||. .|+.-|..++.+|+.. +++..+.|........
T Consensus 996 HGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~l 1072 (1549)
T KOG0392|consen 996 HGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERREL 1072 (1549)
T ss_pred cceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHH
Confidence 468899999999998655444444433222222233348999995 7999999999999876 6777777776665555
Q ss_pred HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch-HHHHH
Q 015759 91 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK-KVKKL 169 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~ 169 (401)
+.-.+.++|+|++++.+.+-.... .-..+.++|+||.|-+-+. ...+....+.+.... .+.+|+||.. ++.++
T Consensus 1073 R~q~~~~~iiVtSYDv~RnD~d~l---~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~h-RLILSGTPIQNnvleL 1146 (1549)
T KOG0392|consen 1073 RDQYKNANIIVTSYDVVRNDVDYL---IKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRANH-RLILSGTPIQNNVLEL 1146 (1549)
T ss_pred HhhccccceEEeeHHHHHHHHHHH---HhcccceEEecCcceecch--HHHHHHHHHHHhhcc-eEEeeCCCcccCHHHH
Confidence 555556899999999997655442 2235779999999965442 222333333332222 5788999421 11111
Q ss_pred HHHh-------------------------------------------------------------c--------------
Q 015759 170 QRAC-------------------------------------------------------------L-------------- 174 (401)
Q Consensus 170 ~~~~-------------------------------------------------------------~-------------- 174 (401)
...+ +
T Consensus 1147 WSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCe 1226 (1549)
T KOG0392|consen 1147 WSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCE 1226 (1549)
T ss_pred HHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeec
Confidence 0000 0
Q ss_pred -------------CC---CeEEEeccccccccc-----------ce----EE-EEEc-----------------------
Q 015759 175 -------------KN---PVKIEAASKYSTVDT-----------LK----QQ-YRFV----------------------- 199 (401)
Q Consensus 175 -------------~~---~~~~~~~~~~~~~~~-----------~~----~~-~~~~----------------------- 199 (401)
.. ............... .+ +. +..-
T Consensus 1227 Ls~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi 1306 (1549)
T KOG0392|consen 1227 LSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDI 1306 (1549)
T ss_pred cCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHh
Confidence 00 000000000000000 00 00 0000
Q ss_pred CCCChhHHHHHHHHhc----------------CCCCEEEEecchHHHHHHHHHHHhc-C--CceEeecCCCCHHHHHHHH
Q 015759 200 PAKYKDCYLVYILTEV----------------SASSTMVFTRTCDATRLLALMLRNL-G--QRAIPISGHMSQSKRLGAL 260 (401)
Q Consensus 200 ~~~~~~~~l~~~l~~~----------------~~~~~ivf~~~~~~~~~l~~~l~~~-~--~~~~~~~~~~~~~~r~~~~ 260 (401)
....|..++..++..+ .+++++|||+-+...+.+.+-|-+. - +....+.|..++.+|.++.
T Consensus 1307 ~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV 1386 (1549)
T KOG0392|consen 1307 QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIV 1386 (1549)
T ss_pred hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHH
Confidence 0122445555666544 2468999999999999988776554 2 3344889999999999999
Q ss_pred hhccCC-CceEE-EEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCce--EEEEecccc
Q 015759 261 NKFKAG-ECNIL-ICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV--AISLVNQYE 325 (401)
Q Consensus 261 ~~f~~~-~~~vL-v~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~--~i~~~~~~~ 325 (401)
++|+++ .++|| .+|.+++.|+|+.++++||+++-.|+|-.-+|...||+|.|++-. ++.++....
T Consensus 1387 ~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1387 ERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred HHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 999997 68876 667799999999999999999999999999999999999998744 455666553
No 124
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=7.4e-21 Score=174.98 Aligned_cols=296 Identities=20% Similarity=0.290 Sum_probs=193.4
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH-hccCCCceEEE--
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAV-- 79 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~-~~~~~~i~~~~-- 79 (401)
|..+..++-++|.+.||||||+.. .+.+...... .+..+-+--|.|.-|..+++++.+ ++..+|-.+.+
T Consensus 365 l~~ir~n~vvvivgETGSGKTTQl----~QyL~edGY~----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 365 LSVIRENQVVVIVGETGSGKTTQL----AQYLYEDGYA----DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred HHHHhhCcEEEEEecCCCCchhhh----HHHHHhcccc----cCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 455667888999999999999973 3444443322 233466777999999888877654 44333322222
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhc-cccc-cHHHHHHHHHhCCCCceEEE
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDD-FEKSLDEILNVIPRMRQTYL 157 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~-~~~~~~~i~~~~~~~~~~i~ 157 (401)
-..+.+. ....|-++|.+.|++-..... .+.++++||+||||.- ++.. ..-.+..++.. .+...+|.
T Consensus 437 RFEdvT~--------~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliV 505 (1042)
T KOG0924|consen 437 RFEDVTS--------EDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIV 505 (1042)
T ss_pred EeeecCC--------CceeEEEeccchHHHHHhhhh--hhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEE
Confidence 2222111 235688999999987665544 5789999999999942 1111 11122222222 23457999
Q ss_pred EeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHH---hcCCCCEEEEecchHHHHHH
Q 015759 158 FSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILT---EVSASSTMVFTRTCDATRLL 233 (401)
Q Consensus 158 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~---~~~~~~~ivf~~~~~~~~~l 233 (401)
.|||+.. +.+.+ ++++...+......++. ...+...+- ++-...+...+. ....+.++||....+..+-.
T Consensus 506 tSATm~a--~kf~n-fFgn~p~f~IpGRTyPV---~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t 579 (1042)
T KOG0924|consen 506 TSATMDA--QKFSN-FFGNCPQFTIPGRTYPV---EIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECT 579 (1042)
T ss_pred eeccccH--HHHHH-HhCCCceeeecCCccce---EEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHH
Confidence 9999865 34433 44444444444443332 222222222 122222333332 22557899999887766655
Q ss_pred HHHHHhc----------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEec----------
Q 015759 234 ALMLRNL----------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD---------- 293 (401)
Q Consensus 234 ~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~---------- 293 (401)
+..++.. +..+..+++.++.+-+.++++.-..|..+++|||++++..+.+|++.+||.-+
T Consensus 580 ~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~ 659 (1042)
T KOG0924|consen 580 CDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPR 659 (1042)
T ss_pred HHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccc
Confidence 5554432 56789999999999998998888888899999999999999999999999744
Q ss_pred --------CCCChhHHHHHhhhcccCCCCceEEEEeccc
Q 015759 294 --------IPTNSKDYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 294 --------~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
.|.|-..--||.|||||.| +|.||.++...
T Consensus 660 ~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 660 IGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 3345667789999999987 89999999763
No 125
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=4.7e-20 Score=175.82 Aligned_cols=149 Identities=20% Similarity=0.226 Sum_probs=108.6
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc-CCCceEEEEEcC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS-GISLRCAVLVGG 83 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~-~~~i~~~~~~~~ 83 (401)
..-.+++++|+|||.+|||.+ ...+++.+++.. ....+++++|+++|+.|+...+..... ..-.+...+.|.
T Consensus 522 svDr~eSavIVAPTSaGKTfi-sfY~iEKVLRes------D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ 594 (1330)
T KOG0949|consen 522 SVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRES------DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGD 594 (1330)
T ss_pred hhhcccceEEEeeccCCceec-cHHHHHHHHhhc------CCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhh
Confidence 345788999999999999985 556778888765 566799999999999999887766542 211222333333
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcC--CCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNT--KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
.+...+.. ...|+|+|+-|+.+-..+... .......+++||+||+|.+....-+-.+..++...+ ++++++|||
T Consensus 595 ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L~LSAT 670 (1330)
T KOG0949|consen 595 LTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFLVLSAT 670 (1330)
T ss_pred hhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCeeEEecc
Confidence 33222221 225999999999998877763 223578899999999999888777777777777765 569999999
Q ss_pred Cch
Q 015759 162 MTK 164 (401)
Q Consensus 162 ~~~ 164 (401)
..+
T Consensus 671 igN 673 (1330)
T KOG0949|consen 671 IGN 673 (1330)
T ss_pred cCC
Confidence 743
No 126
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.4e-21 Score=181.04 Aligned_cols=304 Identities=21% Similarity=0.258 Sum_probs=194.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCC--ceEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS--LRCAV 79 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~--i~~~~ 79 (401)
|+++|..+--+||||.||||||+..--.+.++-..... ...+..+=|--|.|.-|..++++...-...++ +.+.+
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~---~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqI 340 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQ---SSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQI 340 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCcc---CCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEE
Confidence 56788888889999999999998733323322221111 11233577888998777776665543222233 33333
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC-------CC-
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-------PR- 151 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-------~~- 151 (401)
-+.++ ......|-++|.+.|++-+.+. |.+..++.||+||||.-.- +.+.+..+++++ .+
T Consensus 341 Rfd~t--------i~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k~~ke 408 (1172)
T KOG0926|consen 341 RFDGT--------IGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQKYYKE 408 (1172)
T ss_pred Eeccc--------cCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHHHhhh
Confidence 33332 2235789999999999988764 4688999999999995211 223333333221 11
Q ss_pred -----CceEEEEeecCchH-HHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHH---HHHHHHhcCCCCEEE
Q 015759 152 -----MRQTYLFSATMTKK-VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY---LVYILTEVSASSTMV 222 (401)
Q Consensus 152 -----~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~iv 222 (401)
.-..|+||||+.-+ ..+-...+-..|..+.+....++ ...|+-...+.++-... ...+.+..+.+.+||
T Consensus 409 ~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfP--VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILV 486 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFP--VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILV 486 (1172)
T ss_pred hcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCc--eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEE
Confidence 23589999997422 11111222233445555544332 22222222333333333 333445668999999
Q ss_pred EecchHHHHHHHHHHHhc--------------------------------------------------------------
Q 015759 223 FTRTCDATRLLALMLRNL-------------------------------------------------------------- 240 (401)
Q Consensus 223 f~~~~~~~~~l~~~l~~~-------------------------------------------------------------- 240 (401)
|+-...++..+++.|++.
T Consensus 487 FvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ra 566 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRA 566 (1172)
T ss_pred EEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhh
Confidence 999999999999988753
Q ss_pred -------------------------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCC
Q 015759 241 -------------------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDI 283 (401)
Q Consensus 241 -------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~ 283 (401)
..-|..+++-++..++.++++.-..|..-++|+|++++..+.+
T Consensus 567 a~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI 646 (1172)
T KOG0926|consen 567 AFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI 646 (1172)
T ss_pred hhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc
Confidence 0114556666777777788777778888899999999999999
Q ss_pred CCCCEEEEe--------cCCCCh----------hHHHHHhhhcccCCCCceEEEEecc
Q 015759 284 PSVDMVINY--------DIPTNS----------KDYIHRVGRTARAGRTGVAISLVNQ 323 (401)
Q Consensus 284 ~~~~~vi~~--------~~p~s~----------~~~~Q~~GR~~R~g~~g~~i~~~~~ 323 (401)
|++.+||.. |.-.++ ..--||+|||||.| .|.||.+++.
T Consensus 647 PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 647 PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred CCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999999973 333333 33459999999987 8999998864
No 127
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=1.3e-20 Score=169.92 Aligned_cols=282 Identities=20% Similarity=0.272 Sum_probs=188.6
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
..|-++-+|||.||||+- +++++. ..+..++.-|.+-||.+++++++..+ +.+..++|.....
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~---------~aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~ 252 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLK---------SAKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRF 252 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHh---------hhccceecchHHHHHHHHHHHhhhcC----CCccccccceeee
Confidence 456678889999999987 456655 44557999999999999999999864 7777788764432
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHHH
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 167 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 167 (401)
.... ...+..+-||-++.. .-..+++.|+||++.|.+.+.+-.+.+.+--+...- +-++. - +.+.
T Consensus 253 ~~~~--~~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE-iHLCG-e--psvl 317 (700)
T KOG0953|consen 253 VLDN--GNPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE-IHLCG-E--PSVL 317 (700)
T ss_pred cCCC--CCcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh-hhccC-C--chHH
Confidence 2111 224678888977651 123578999999999998877767666543332111 11111 1 2223
Q ss_pred HHHHHhcC---CCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCc-
Q 015759 168 KLQRACLK---NPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR- 243 (401)
Q Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~- 243 (401)
.+.+..+. +...+. .|.....-.-...+..-+.....+.++|. -+++....+...+.+.|..
T Consensus 318 dlV~~i~k~TGd~vev~-------------~YeRl~pL~v~~~~~~sl~nlk~GDCvV~-FSkk~I~~~k~kIE~~g~~k 383 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVR-------------EYERLSPLVVEETALGSLSNLKPGDCVVA-FSKKDIFTVKKKIEKAGNHK 383 (700)
T ss_pred HHHHHHHhhcCCeeEEE-------------eecccCcceehhhhhhhhccCCCCCeEEE-eehhhHHHHHHHHHHhcCcc
Confidence 33333322 222221 12111111111123333445555556553 4667888888999888776
Q ss_pred eEeecCCCCHHHHHHHHhhccC--CCceEEEEcCCCCCCCCCCCCCEEEEecCC---------CChhHHHHHhhhcccCC
Q 015759 244 AIPISGHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDIP---------TNSKDYIHRVGRTARAG 312 (401)
Q Consensus 244 ~~~~~~~~~~~~r~~~~~~f~~--~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~g 312 (401)
+++++|.++++.|.+-...|++ ++++|||||+++++|+|+ +++.||+++.- .+..+..|.+|||||.|
T Consensus 384 ~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 384 CAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred eEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 9999999999999999999998 899999999999999999 89999988754 45678899999999998
Q ss_pred C---CceEEEEeccccHHHHHHHHHHhCCCC
Q 015759 313 R---TGVAISLVNQYELEWYLQIEKLIGKKL 340 (401)
Q Consensus 313 ~---~g~~i~~~~~~~~~~~~~~~~~~~~~~ 340 (401)
. .|.+-++..+ .+..+.+.+..+.
T Consensus 463 s~~~~G~vTtl~~e----DL~~L~~~l~~p~ 489 (700)
T KOG0953|consen 463 SKYPQGEVTTLHSE----DLKLLKRILKRPV 489 (700)
T ss_pred cCCcCceEEEeeHh----hHHHHHHHHhCCc
Confidence 4 3555555433 2444555554443
No 128
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.86 E-value=3.5e-20 Score=173.31 Aligned_cols=307 Identities=20% Similarity=0.286 Sum_probs=203.5
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
.+-+.|+...+|.|||.. +++.+..+..... +++ =|||||...| +.|.+++.+|+.. +++..++|.....
T Consensus 417 ~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-----~gp-HLVVvPsSTl-eNWlrEf~kwCPs--l~Ve~YyGSq~ER 486 (941)
T KOG0389|consen 417 KKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-----PGP-HLVVVPSSTL-ENWLREFAKWCPS--LKVEPYYGSQDER 486 (941)
T ss_pred ccccceehhhccCcchhH-HHHHHHHHHHcCC-----CCC-cEEEecchhH-HHHHHHHHHhCCc--eEEEeccCcHHHH
Confidence 566789999999999976 3445555554331 333 3899999876 8899999999864 8999999988655
Q ss_pred HHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 88 QQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 88 ~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
.+.+.. ...++|+++|+......-.....+.-.+++++|+||+|.+-+.. ..-+..+...- ..+.+++|+||-
T Consensus 487 ~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~--An~RlLLTGTPL 563 (941)
T KOG0389|consen 487 RELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN--ANFRLLLTGTPL 563 (941)
T ss_pred HHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc--ccceEEeeCCcc
Confidence 443332 22789999998876432222222445678999999999655532 22233333322 233677788842
Q ss_pred h-HHHHHHHHh----------------------------------------------------------cCC-C---eEE
Q 015759 164 K-KVKKLQRAC----------------------------------------------------------LKN-P---VKI 180 (401)
Q Consensus 164 ~-~~~~~~~~~----------------------------------------------------------~~~-~---~~~ 180 (401)
. ++.+++... +.. | ..+
T Consensus 564 QNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~I 643 (941)
T KOG0389|consen 564 QNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRI 643 (941)
T ss_pred cccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcccee
Confidence 1 111100000 000 0 000
Q ss_pred E-e-----------------------ccccccccc---------------c-eEEE------------------------
Q 015759 181 E-A-----------------------ASKYSTVDT---------------L-KQQY------------------------ 196 (401)
Q Consensus 181 ~-~-----------------------~~~~~~~~~---------------~-~~~~------------------------ 196 (401)
. . ......... + +..|
T Consensus 644 e~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~q 723 (941)
T KOG0389|consen 644 EYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQ 723 (941)
T ss_pred EeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHH
Confidence 0 0 000000000 0 0000
Q ss_pred ---------------------------E----EcCCCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhcCCc
Q 015759 197 ---------------------------R----FVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQR 243 (401)
Q Consensus 197 ---------------------------~----~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~ 243 (401)
. .+-...|...+..+|... .+++++||.........+...|...++.
T Consensus 724 yIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ 803 (941)
T KOG0389|consen 724 YIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYK 803 (941)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCce
Confidence 0 000122334444455433 5689999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHhhccCCC--ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCC--ceEEE
Q 015759 244 AIPISGHMSQSKRLGALNKFKAGE--CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT--GVAIS 319 (401)
Q Consensus 244 ~~~~~~~~~~~~r~~~~~~f~~~~--~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--g~~i~ 319 (401)
...+.|.....+|+.++..|...+ .-+|++|.+++-|||+..+++||.+|...+|-+-.|+--||+|.|+. -.++.
T Consensus 804 ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~r 883 (941)
T KOG0389|consen 804 YLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYR 883 (941)
T ss_pred EEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEE
Confidence 999999999999999999998755 34789999999999999999999999999999999999999999964 56677
Q ss_pred EeccccHH
Q 015759 320 LVNQYELE 327 (401)
Q Consensus 320 ~~~~~~~~ 327 (401)
+++....+
T Consensus 884 LItk~TIE 891 (941)
T KOG0389|consen 884 LITKSTIE 891 (941)
T ss_pred EEecCcHH
Confidence 78776543
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.86 E-value=4.5e-19 Score=180.31 Aligned_cols=121 Identities=14% Similarity=0.213 Sum_probs=89.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCC--ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCC--CCEEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS--VDMVIN 291 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~--~~~vi~ 291 (401)
.+++++|+++|.+..+.+++.|..... ...++.-+++...|.+++++|+.++..||++|..+++|+|+|+ +.+||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567999999999999999999976532 1233433444456788999999988889999999999999998 578888
Q ss_pred ecCCCC-hh-----------------------------HHHHHhhhcccCCCCceEEEEeccc--cHHHHHHHHHHh
Q 015759 292 YDIPTN-SK-----------------------------DYIHRVGRTARAGRTGVAISLVNQY--ELEWYLQIEKLI 336 (401)
Q Consensus 292 ~~~p~s-~~-----------------------------~~~Q~~GR~~R~g~~g~~i~~~~~~--~~~~~~~~~~~~ 336 (401)
...|.. +. .+.|.+||.-|..++.-++++++.. ...+-+.+.+.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sL 907 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESL 907 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhC
Confidence 887752 21 2369999999988664456666654 333444454444
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.85 E-value=1e-18 Score=168.98 Aligned_cols=264 Identities=19% Similarity=0.160 Sum_probs=168.5
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
-.+.-.+.-|..+.||.|||+++.+|+.-..+ .+..|-|++++..||.+-++++..+...+|+.+..+.++
T Consensus 84 g~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL---------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~ 154 (870)
T CHL00122 84 GGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL---------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEG 154 (870)
T ss_pred hhHhhcCCccccccCCCCchHHHHHHHHHHHh---------cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCC
Confidence 33444577899999999999999998875555 567799999999999999999999888889999998887
Q ss_pred CChHHHHHHhCCCCCEEEECchHHH-HHHhcC----C-CCCCCCccEEEEcchhhccccc----------------cHH-
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLM-DHLTNT----K-GFSLGTLKYLVLDEADRLLNDD----------------FEK- 140 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~----~-~~~~~~~~~iIiDE~h~~~~~~----------------~~~- 140 (401)
.+........ .++|+++|...|- +++... . ......+.+.|+||+|.++=+. ...
T Consensus 155 ~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~~ 232 (870)
T CHL00122 155 MSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIV 232 (870)
T ss_pred CChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccchHHHHH
Confidence 7766555444 4899999986542 222221 1 1124568899999999622100 000
Q ss_pred ------------------------------------------------HHHHHHHhC------CC---------------
Q 015759 141 ------------------------------------------------SLDEILNVI------PR--------------- 151 (401)
Q Consensus 141 ------------------------------------------------~~~~i~~~~------~~--------------- 151 (401)
.+..+...+ .+
T Consensus 233 ~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iVD 312 (870)
T CHL00122 233 ADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVD 312 (870)
T ss_pred HHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEE
Confidence 000000000 00
Q ss_pred ----------------------------------------------CceEEEEeecCchHHHHHHHHhcCCCeEEEeccc
Q 015759 152 ----------------------------------------------MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185 (401)
Q Consensus 152 ----------------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
...+.+||+|......++...+.-+...+.....
T Consensus 313 e~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp 392 (870)
T CHL00122 313 EFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRP 392 (870)
T ss_pred CCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCC
Confidence 0357788888876655555544333333222211
Q ss_pred ccccccceEEEEEcCCCChhH-HHHHHHH-hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCC--HHHHHHHHh
Q 015759 186 YSTVDTLKQQYRFVPAKYKDC-YLVYILT-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMS--QSKRLGALN 261 (401)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~-~l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~r~~~~~ 261 (401)
... .... ...+.....|.. .+..+.. +..+.|+||-|.|++..+.+++.|.+.|++..+++..-. ..|- +++.
T Consensus 393 ~~R-~d~~-d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA-~IIA 469 (870)
T CHL00122 393 MLR-KDLP-DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRES-EIVA 469 (870)
T ss_pred ccc-eeCC-CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHH-HHHH
Confidence 111 1111 112222222333 3333333 347889999999999999999999999999999998742 2332 2332
Q ss_pred hccCCC-ceEEEEcCCCCCCCCC
Q 015759 262 KFKAGE-CNILICTDVASRGLDI 283 (401)
Q Consensus 262 ~f~~~~-~~vLv~T~~~~~Gid~ 283 (401)
. .|+ -.|.|||+++++|.|+
T Consensus 470 ~--AG~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 470 Q--AGRKGSITIATNMAGRGTDI 490 (870)
T ss_pred h--cCCCCcEEEeccccCCCcCe
Confidence 2 233 3599999999999887
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1e-18 Score=168.08 Aligned_cols=301 Identities=17% Similarity=0.141 Sum_probs=200.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
+.-|..+.||-|||+++.+|+.-..+ .+..|-|++...-||..=++++..+...+|+.+..+..+.+....
T Consensus 92 ~G~IAEMkTGEGKTLvAtLpayLnAL---------~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~r 162 (925)
T PRK12903 92 LGSVAEMKTGEGKTITSIAPVYLNAL---------TGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLK 162 (925)
T ss_pred cCCeeeecCCCCccHHHHHHHHHHHh---------cCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHH
Confidence 33578999999999999988876665 667788999999999988888888878889999988877665554
Q ss_pred HHHhCCCCCEEEECchHH-HHHHhcCCC-----CCCCCccEEEEcchhhccccc----------------cHHHHHHHHH
Q 015759 90 TLALGKRPHIVVATPGRL-MDHLTNTKG-----FSLGTLKYLVLDEADRLLNDD----------------FEKSLDEILN 147 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l-~~~~~~~~~-----~~~~~~~~iIiDE~h~~~~~~----------------~~~~~~~i~~ 147 (401)
.... .++|+++|...| .+++...-. .-...+.+.||||+|.++=.. +......+..
T Consensus 163 r~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~ 240 (925)
T PRK12903 163 REAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVR 240 (925)
T ss_pred HHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHH
Confidence 4444 489999998775 334432211 124567899999999632100 0011111111
Q ss_pred hCCC----------------------------------------------------------------------------
Q 015759 148 VIPR---------------------------------------------------------------------------- 151 (401)
Q Consensus 148 ~~~~---------------------------------------------------------------------------- 151 (401)
.+..
T Consensus 241 ~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~ 320 (925)
T PRK12903 241 TLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRI 320 (925)
T ss_pred hccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCC
Confidence 1100
Q ss_pred ----------------------------------------CceEEEEeecCchHHHHHHHHhcCCCeEEEeccccccccc
Q 015759 152 ----------------------------------------MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDT 191 (401)
Q Consensus 152 ----------------------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (401)
...+.+||+|....-.++...+.-....+.........+.
T Consensus 321 m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~ 400 (925)
T PRK12903 321 MEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDE 400 (925)
T ss_pred CCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeC
Confidence 0246677777766555555544333333322111111111
Q ss_pred ceEEEEEcCCCChhHHHHHHHH--hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCC-c
Q 015759 192 LKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE-C 268 (401)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~ 268 (401)
.. ..+.....|...+...+. +..+.|+||.|.|++.++.+++.|.+.|+...+++......+-.-+. ..|+ -
T Consensus 401 ~d--~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa---~AG~~G 475 (925)
T PRK12903 401 PD--SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIA---KAGQKG 475 (925)
T ss_pred CC--cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHH---hCCCCC
Confidence 11 122223334334443333 33788999999999999999999999999999999875433322222 3343 3
Q ss_pred eEEEEcCCCCCCCCCCCCC--------EEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 269 NILICTDVASRGLDIPSVD--------MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 269 ~vLv~T~~~~~Gid~~~~~--------~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
.|.|||+++++|.|+.--. +||....|.|..---|..||+||-|.+|.+..+++-+|.
T Consensus 476 aVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 476 AITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred eEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 6999999999999995222 888899999988888999999999999999888876653
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=3.5e-20 Score=165.14 Aligned_cols=297 Identities=19% Similarity=0.201 Sum_probs=196.9
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
++-||+.|+|+|||++.+-++.- -.+++|++|.+..-++||...+..|....+-.++.++++...
T Consensus 321 RSGiIVLPCGAGKtLVGvTAa~t------------ikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke--- 385 (776)
T KOG1123|consen 321 RSGIIVLPCGAGKTLVGVTAACT------------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKE--- 385 (776)
T ss_pred cCceEEEecCCCCceeeeeeeee------------ecccEEEEecCccCHHHHHHHHHhhcccCccceEEeeccccc---
Confidence 67899999999999875443221 567799999999999999999999987666677777766443
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCC-------CCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTK-------GFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~-------~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
....++.|+|+|+.++...-.+.. .+.-..++++++||+|.+...-|+..+..+.... .+++|||+
T Consensus 386 --~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATL 458 (776)
T KOG1123|consen 386 --RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATL 458 (776)
T ss_pred --cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEE
Confidence 233578999999998743211110 0224578999999999877666766666554443 57999997
Q ss_pred chHHHHHHHH-hcCCCeEEEec----ccccccccceEEEEEcCC-----------------------CChhHHHHHHH--
Q 015759 163 TKKVKKLQRA-CLKNPVKIEAA----SKYSTVDTLKQQYRFVPA-----------------------KYKDCYLVYIL-- 212 (401)
Q Consensus 163 ~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----------------------~~~~~~l~~~l-- 212 (401)
-.+-...... ++-.|..+... ........++..-.+|+- -.|......++
T Consensus 459 vREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~ 538 (776)
T KOG1123|consen 459 VREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKF 538 (776)
T ss_pred eeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHH
Confidence 4432221111 01111111000 000001111111122221 11222222232
Q ss_pred HhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccC-CCceEEEEcCCCCCCCCCCCCCEEEE
Q 015759 213 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVIN 291 (401)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vLv~T~~~~~Gid~~~~~~vi~ 291 (401)
....+.++|||..++-....++-.|.+ -.++|..++.+|.++++.|+- ..++.+..+.++...+|+|..+++|+
T Consensus 539 HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ 613 (776)
T KOG1123|consen 539 HERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ 613 (776)
T ss_pred HHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEE
Confidence 234789999999998877777777654 478899999999999999985 56788888899999999999999998
Q ss_pred ecCCC-ChhHHHHHhhhcccCCC------CceEEEEeccccHHHHHHHH
Q 015759 292 YDIPT-NSKDYIHRVGRTARAGR------TGVAISLVNQYELEWYLQIE 333 (401)
Q Consensus 292 ~~~p~-s~~~~~Q~~GR~~R~g~------~g~~i~~~~~~~~~~~~~~~ 333 (401)
..... |-.+-.||+||+.|+-+ ....+++++.+..+++..-.
T Consensus 614 ISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStK 662 (776)
T KOG1123|consen 614 ISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTK 662 (776)
T ss_pred EcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhh
Confidence 76553 55677899999999742 24567888877766655443
No 133
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=7.3e-20 Score=165.47 Aligned_cols=356 Identities=12% Similarity=0.076 Sum_probs=247.2
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC---CCceEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG---ISLRCAV 79 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~---~~i~~~~ 79 (401)
|..+-+|+++++.-.|.+||++++.+......... +....++..|+.++++...+.+.-.... ..-.++-
T Consensus 295 ~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-------~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~ 367 (1034)
T KOG4150|consen 295 LKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-------HATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVE 367 (1034)
T ss_pred HhhhhhcccccccchhhcCCccCcccchhhhhhcC-------cccceecchhHHHHhhccCCceEEEEEehhhhhcceee
Confidence 34567899999999999999999888777665543 4455889999999987765543321111 1112333
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCC-C--CCCCCccEEEEcchhhccccccH----HHHHHHHHhC---
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTK-G--FSLGTLKYLVLDEADRLLNDDFE----KSLDEILNVI--- 149 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~-~--~~~~~~~~iIiDE~h~~~~~~~~----~~~~~i~~~~--- 149 (401)
...+.+........+.+.+++++.|++......... . ..+-...++++||+|.... -++ ..+.++.+.+
T Consensus 368 ~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 368 MSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLF-PTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred cccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeec-chhhHHHHHHHHHHHHHHHH
Confidence 344555555555556678999999998866543322 1 1233456889999995433 222 2333333332
Q ss_pred --CCCceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC---------ChhHHHHHHHHh--cC
Q 015759 150 --PRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK---------YKDCYLVYILTE--VS 216 (401)
Q Consensus 150 --~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~--~~ 216 (401)
....|++-.|||....+..+.+.+.-+...+. ..+.++..-.+...+.|.- .+......++.+ ..
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li--~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~ 524 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANLSELELV--TIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH 524 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEE--EecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc
Confidence 23458899999998877766665543333222 2233334445555555531 122223333332 26
Q ss_pred CCCEEEEecchHHHHHHHHHHHhc----CC----ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCE
Q 015759 217 ASSTMVFTRTCDATRLLALMLRNL----GQ----RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM 288 (401)
Q Consensus 217 ~~~~ivf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~ 288 (401)
+-++|-||++++.|+.+....++. +. .+..+.|+...++|.++....-.|+..-+|+|++++.|||+.+++.
T Consensus 525 ~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDA 604 (1034)
T KOG4150|consen 525 GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDA 604 (1034)
T ss_pred CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccccee
Confidence 789999999999998876655443 21 3567789999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhHHHHHhhhcccCCCCceEEEEe--ccccHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhh
Q 015759 289 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLV--NQYELEWYLQIEKLIGKKLPEFPAEEEEVLLLLERVTEAKRISQM 366 (401)
Q Consensus 289 vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (401)
|++.++|.|...+.|..||+||..+++.++.+. .|-|..++...+..++.+-.++.++......+..++..|.-+-++
T Consensus 605 Vl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELPI 684 (1034)
T KOG4150|consen 605 VLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELPI 684 (1034)
T ss_pred EEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCcc
Confidence 999999999999999999999999887765554 456788888888888888888888877777777788777655444
Q ss_pred hh
Q 015759 367 TI 368 (401)
Q Consensus 367 ~~ 368 (401)
.+
T Consensus 685 N~ 686 (1034)
T KOG4150|consen 685 NL 686 (1034)
T ss_pred cc
Confidence 43
No 134
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.82 E-value=1.2e-17 Score=159.82 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=79.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccC----CCceEEEEcCCCCCCCCC--------
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA----GECNILICTDVASRGLDI-------- 283 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vLv~T~~~~~Gid~-------- 283 (401)
.++.++|.+.+....+.+++.|...-.....+.|+.+ .+..++++|+. +...||++|+.+++|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 6778999999999999999999764323344455432 34668888887 468899999999999999
Q ss_pred CC--CCEEEEecCCCChh-------------------------HHHHHhhhcccCCCC--ceEEEEeccc
Q 015759 284 PS--VDMVINYDIPTNSK-------------------------DYIHRVGRTARAGRT--GVAISLVNQY 324 (401)
Q Consensus 284 ~~--~~~vi~~~~p~s~~-------------------------~~~Q~~GR~~R~g~~--g~~i~~~~~~ 324 (401)
|+ +++||...+|+.+. .+.|-+||.-|...+ --++.++++.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 34 88999888885332 346889999998766 4455555554
No 135
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=3.5e-19 Score=158.56 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=194.5
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
++..|-.+++...+|.|||+.++.- ..... ..-..||+||. ++-..|++.++.|..... .+.+..++.
T Consensus 210 aL~RgGR~llADeMGLGKTiQAlaI--A~yyr--------aEwplliVcPA-svrftWa~al~r~lps~~-pi~vv~~~~ 277 (689)
T KOG1000|consen 210 ALERGGRILLADEMGLGKTIQALAI--ARYYR--------AEWPLLIVCPA-SVRFTWAKALNRFLPSIH-PIFVVDKSS 277 (689)
T ss_pred HHhcCCeEEEecccccchHHHHHHH--HHHHh--------hcCcEEEEecH-HHhHHHHHHHHHhccccc-ceEEEeccc
Confidence 5678899999999999999986542 22222 22238999996 567889999999876432 233444432
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc-
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT- 163 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~- 163 (401)
.... .+-....|.|.+++++..+-.. +.-..+.+||+||+|.+-+. -......+...+.....++++|+|+.
T Consensus 278 D~~~---~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvILLSGTPav 350 (689)
T KOG1000|consen 278 DPLP---DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVILLSGTPAV 350 (689)
T ss_pred CCcc---ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEEecCCccc
Confidence 2211 1112356999999988664433 23446889999999966553 33335555555555566899999962
Q ss_pred ---h---------------HHHHHHHHhcCC---CeEEEeccc------------------------ccccccceEEEEE
Q 015759 164 ---K---------------KVKKLQRACLKN---PVKIEAASK------------------------YSTVDTLKQQYRF 198 (401)
Q Consensus 164 ---~---------------~~~~~~~~~~~~---~~~~~~~~~------------------------~~~~~~~~~~~~~ 198 (401)
. +..++...++.. +..+..... ..-+..-++..+.
T Consensus 351 SRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~ 430 (689)
T KOG1000|consen 351 SRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYV 430 (689)
T ss_pred CCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEE
Confidence 1 111222222210 000000000 0000111111111
Q ss_pred cCC---------------------C----------------ChhHHHHH-HHH-----hcCCCCEEEEecchHHHHHHHH
Q 015759 199 VPA---------------------K----------------YKDCYLVY-ILT-----EVSASSTMVFTRTCDATRLLAL 235 (401)
Q Consensus 199 ~~~---------------------~----------------~~~~~l~~-~l~-----~~~~~~~ivf~~~~~~~~~l~~ 235 (401)
+.. . .|...+.+ ++. ..++.+.+||+.-....+.+..
T Consensus 431 ~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~ 510 (689)
T KOG1000|consen 431 SGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQV 510 (689)
T ss_pred cCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHH
Confidence 111 0 01111111 222 2367799999999999999999
Q ss_pred HHHhcCCceEeecCCCCHHHHHHHHhhccCCC-ceE-EEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 236 MLRNLGQRAIPISGHMSQSKRLGALNKFKAGE-CNI-LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~v-Lv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
.+.+.++....+.|..++.+|....+.|+..+ ..| +++..+++.|+++...+.|++..++|++.-++|.=.|++|.|+
T Consensus 511 ~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQ 590 (689)
T KOG1000|consen 511 EVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQ 590 (689)
T ss_pred HHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccc
Confidence 99999999999999999999999999999754 443 5677799999999999999999999999999999999999998
Q ss_pred CceEEEE
Q 015759 314 TGVAISL 320 (401)
Q Consensus 314 ~g~~i~~ 320 (401)
.+.+.+.
T Consensus 591 kssV~v~ 597 (689)
T KOG1000|consen 591 KSSVFVQ 597 (689)
T ss_pred cceeeEE
Confidence 7655443
No 136
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3.2e-17 Score=158.50 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=90.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
.+.-|..+.||.|||+++.+|+.-..+ .++.|-|++++..||..=++++..+...+|+.+..+.++.+...
T Consensus 98 h~G~IAEM~TGEGKTL~atlpaylnAL---------~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~e 168 (939)
T PRK12902 98 HEGQIAEMKTGEGKTLVATLPSYLNAL---------TGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEE 168 (939)
T ss_pred cCCceeeecCCCChhHHHHHHHHHHhh---------cCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHH
Confidence 566788999999999999999887776 67779999999999999999999888888999999887766554
Q ss_pred HHHHhCCCCCEEEECchHH-----HHHHhcCC-CCCCCCccEEEEcchhhc
Q 015759 89 QTLALGKRPHIVVATPGRL-----MDHLTNTK-GFSLGTLKYLVLDEADRL 133 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l-----~~~~~~~~-~~~~~~~~~iIiDE~h~~ 133 (401)
.... -.+||+++|+..| .+.+.... ......+.+.||||+|.+
T Consensus 169 rr~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 169 RKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 4433 3699999999887 44444321 123567889999999963
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.81 E-value=2.4e-18 Score=145.55 Aligned_cols=173 Identities=38% Similarity=0.524 Sum_probs=132.4
Q ss_pred cccccCC-ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 3 LWFCDAG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g-~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
++.+... +++++.+|||+|||.+++.+++..+... ...+++|++|+..++.|+...+..+............
T Consensus 17 ~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-------~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (201)
T smart00487 17 IEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-------KGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLY 89 (201)
T ss_pred HHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-------CCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 3455566 8999999999999998888777766542 2467999999999999999999987755442333344
Q ss_pred cCCChHHHHHHhCCCC-CEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 82 GGVDMMQQTLALGKRP-HIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
++.............. +++++|++.+.+...... .....++++|+||+|.+....+...+..++..+++..+++++||
T Consensus 90 ~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 168 (201)
T smart00487 90 GGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSA 168 (201)
T ss_pred CCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEec
Confidence 4444333333444444 999999999999887754 45677899999999988765778888888888877788999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEec
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAA 183 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
|++.........+......+...
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 169 TPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred CCchhHHHHHHHhcCCCEEEeCC
Confidence 99988888888877766555444
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=8.9e-19 Score=137.74 Aligned_cols=118 Identities=37% Similarity=0.615 Sum_probs=108.5
Q ss_pred ChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCC
Q 015759 203 YKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRG 280 (401)
Q Consensus 203 ~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~G 280 (401)
.+...+...+... .++++||||++...++.+++.|.+.+..+..+|++++..+|..+++.|.++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5666677776655 47899999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 015759 281 LDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 281 id~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
+|+|++++||++++|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988877653
No 139
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.80 E-value=3.2e-18 Score=136.47 Aligned_cols=144 Identities=44% Similarity=0.576 Sum_probs=111.7
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
+++++.+|||+|||.+++..+....... ...+++|++|++.++.|+.+.+..+... ++.+..+.+.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHH
Confidence 5789999999999999877766655431 4567999999999999999999887754 6778888887766655
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
........+|+++|++++........ .....++++|+||+|.+....+...............+++++||||
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55556679999999999988776654 3456788999999998877665554333444455667899999996
No 140
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.80 E-value=3.1e-18 Score=167.76 Aligned_cols=142 Identities=22% Similarity=0.296 Sum_probs=124.3
Q ss_pred hHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCC
Q 015759 205 DCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLD 282 (401)
Q Consensus 205 ~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid 282 (401)
...+...+.. ..+.+++|||++.+.++.+++.|.+.|+.+..+|++++..+|..++..|+.|++.|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 3344444433 25788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecC-----CCChhHHHHHhhhcccCCCCceEEEEecc---------ccHHHHHHHHHHhCCCCCCCCCCH
Q 015759 283 IPSVDMVINYDI-----PTNSKDYIHRVGRTARAGRTGVAISLVNQ---------YELEWYLQIEKLIGKKLPEFPAEE 347 (401)
Q Consensus 283 ~~~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 347 (401)
+|++++||++|. |.+...|+||+||+||. ..|.++++++. .+....++++..++.+...+|...
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 999999999885 78999999999999995 68999999984 566777888888888888777654
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.78 E-value=5.6e-19 Score=125.03 Aligned_cols=78 Identities=41% Similarity=0.722 Sum_probs=75.5
Q ss_pred HHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCC
Q 015759 235 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG 312 (401)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g 312 (401)
+.|+..++.+..+||+++..+|..+++.|.+++..|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367889999999999999999999999999999999999999999999999999999999999999999999999986
No 142
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=2.3e-17 Score=146.81 Aligned_cols=287 Identities=18% Similarity=0.212 Sum_probs=185.0
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh-----ccCCCc--
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL-----GSGISL-- 75 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~-----~~~~~i-- 75 (401)
+..+.+++-++++|.||||||...--+++...... ...+..--|.+.-+.+++.+...- +...|.
T Consensus 56 ~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--------~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGysI 127 (699)
T KOG0925|consen 56 LKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--------LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSI 127 (699)
T ss_pred HHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--------ccceeecCchHHHHHHHHHHHHHHhccccchhccccc
Confidence 45677889999999999999998766667666653 234667778888887777665432 222111
Q ss_pred eEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhh--ccccccHHHHHHHHHhCCCCc
Q 015759 76 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR--LLNDDFEKSLDEILNVIPRMR 153 (401)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~--~~~~~~~~~~~~i~~~~~~~~ 153 (401)
+..-+++. +.-+-+||.++|++-..+.+ .+..+++||+||+|. +....+.-.++.+....| .-
T Consensus 128 rfEdC~~~------------~T~Lky~tDgmLlrEams~p--~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dL 192 (699)
T KOG0925|consen 128 RFEDCTSP------------NTLLKYCTDGMLLREAMSDP--LLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DL 192 (699)
T ss_pred cccccCCh------------hHHHHHhcchHHHHHHhhCc--ccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-Cc
Confidence 11111111 11133788888888777766 478899999999994 222223334555555554 56
Q ss_pred eEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChh-HHHH---HHHHhcCCCCEEEEecchHH
Q 015759 154 QTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKD-CYLV---YILTEVSASSTMVFTRTCDA 229 (401)
Q Consensus 154 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~---~~l~~~~~~~~ivf~~~~~~ 229 (401)
+++.+|||... .-...++.++..+.+.... .+...|..-+..... ..+. ++......+.++||....++
T Consensus 193 k~vvmSatl~a---~Kfq~yf~n~Pll~vpg~~----PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeee 265 (699)
T KOG0925|consen 193 KLVVMSATLDA---EKFQRYFGNAPLLAVPGTH----PVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEE 265 (699)
T ss_pred eEEEeecccch---HHHHHHhCCCCeeecCCCC----ceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHH
Confidence 79999999864 2345556666666665421 222233322322222 2222 22333367889999999999
Q ss_pred HHHHHHHHHhc---------CCceEeecCCCCHHHHHHHHhhccC-----CCceEEEEcCCCCCCCCCCCCCEEEEec--
Q 015759 230 TRLLALMLRNL---------GQRAIPISGHMSQSKRLGALNKFKA-----GECNILICTDVASRGLDIPSVDMVINYD-- 293 (401)
Q Consensus 230 ~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~-----~~~~vLv~T~~~~~Gid~~~~~~vi~~~-- 293 (401)
.+..++.+... ...|..+| +.+...+++-... -..+|+|+|++++..+.++++.+||.-+
T Consensus 266 Ie~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~ 341 (699)
T KOG0925|consen 266 IEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFS 341 (699)
T ss_pred HHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchh
Confidence 88888877643 23566777 3333444332221 1247999999999999999999998633
Q ss_pred ----------------CCCChhHHHHHhhhcccCCCCceEEEEeccc
Q 015759 294 ----------------IPTNSKDYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 294 ----------------~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
.|.|..+-.||.||+||. .+|+|+.++.+.
T Consensus 342 kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 342 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred hhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 345667788999999995 589999999753
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=99.78 E-value=4.4e-19 Score=167.49 Aligned_cols=293 Identities=19% Similarity=0.231 Sum_probs=170.8
Q ss_pred EEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH-----
Q 015759 14 GLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ----- 88 (401)
Q Consensus 14 i~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~----- 88 (401)
+.+.+|+|||.+.+- +.+++. ..++|+++|+.+|..|..++...- ....++...++++.....
T Consensus 185 LIMAcGTGKTfTsLk-isEala----------~~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDi 252 (1518)
T COG4889 185 LIMACGTGKTFTSLK-ISEALA----------AARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDI 252 (1518)
T ss_pred EEEecCCCccchHHH-HHHHHh----------hhheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCcccccccccc
Confidence 456799999998654 555553 456999999999988876665442 223556555555443210
Q ss_pred --------------------HHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHh
Q 015759 89 --------------------QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV 148 (401)
Q Consensus 89 --------------------~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 148 (401)
.......+--||++|++.+...-...+ ..+..+++||+||||+.....+...-..-...
T Consensus 253 k~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe-~G~~~fDliicDEAHRTtGa~~a~dd~saFt~ 331 (1518)
T COG4889 253 KASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQE-AGLDEFDLIICDEAHRTTGATLAGDDKSAFTR 331 (1518)
T ss_pred ccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHH-cCCCCccEEEecchhccccceecccCccccee
Confidence 111122245699999999877554433 46889999999999985442211100000000
Q ss_pred CC-----CCceEEEEeecCchHHHHHHHHh---------------------------------cCCCeEEEecccccccc
Q 015759 149 IP-----RMRQTYLFSATMTKKVKKLQRAC---------------------------------LKNPVKIEAASKYSTVD 190 (401)
Q Consensus 149 ~~-----~~~~~i~~SAT~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 190 (401)
.. +....++|||||.-.-+...... +.+..++..........
T Consensus 332 vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~ 411 (1518)
T COG4889 332 VHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIA 411 (1518)
T ss_pred ecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhh
Confidence 00 11236789999732111111111 11111111110000000
Q ss_pred cceEEEEEcCC-CChhHHHHHHH-------Hhc--------------CCCCEEEEecchHHHHHHHHHHHhc--------
Q 015759 191 TLKQQYRFVPA-KYKDCYLVYIL-------TEV--------------SASSTMVFTRTCDATRLLALMLRNL-------- 240 (401)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~l~~~l-------~~~--------------~~~~~ivf~~~~~~~~~l~~~l~~~-------- 240 (401)
...+....-+. .....-...++ +.. +-.+.|-||.+.++...+++.+...
T Consensus 412 ~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~El 491 (1518)
T COG4889 412 GVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEEL 491 (1518)
T ss_pred hhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000011 11111111111 110 1135688999988887777666431
Q ss_pred -------CCceEeecCCCCHHHHHHHHh---hccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhccc
Q 015759 241 -------GQRAIPISGHMSQSKRLGALN---KFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTAR 310 (401)
Q Consensus 241 -------~~~~~~~~~~~~~~~r~~~~~---~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R 310 (401)
.+.+....|.|+.-+|...++ .|...+|+||--..++++|+|+|.++.||++++-.+..+.+|.+||+.|
T Consensus 492 k~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMR 571 (1518)
T COG4889 492 KKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMR 571 (1518)
T ss_pred HhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHH
Confidence 334566678899888865554 4567889999999999999999999999999999999999999999999
Q ss_pred CCC---CceEEE
Q 015759 311 AGR---TGVAIS 319 (401)
Q Consensus 311 ~g~---~g~~i~ 319 (401)
... .|+.|+
T Consensus 572 Ka~gK~yGYIIL 583 (1518)
T COG4889 572 KAKGKKYGYIIL 583 (1518)
T ss_pred hCcCCccceEEE
Confidence 752 255544
No 144
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.73 E-value=7e-16 Score=143.12 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=108.4
Q ss_pred CChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCce-EEEEcCCCC
Q 015759 202 KYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN-ILICTDVAS 278 (401)
Q Consensus 202 ~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vLv~T~~~~ 278 (401)
..|...+..++... .++++++|++..+....+.++|.-.++....+.|.....+|..++.+|+..++- +|++|.+++
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 44555566666544 688999999999999999999999999999999999999999999999997765 579999999
Q ss_pred CCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCC--ceEEEEecccc
Q 015759 279 RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT--GVAISLVNQYE 325 (401)
Q Consensus 279 ~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~~ 325 (401)
.|||+..++.||+||..|++..-.|...|++|.|+. ..++.++....
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 999999999999999999999999999999999964 55666666554
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.72 E-value=2.2e-15 Score=150.04 Aligned_cols=121 Identities=20% Similarity=0.224 Sum_probs=85.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCc-eEeecCCCCHHHHHHHHhhccCCCc-eEEEEcCCCCCCCCCCC--CCEEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQR-AIPISGHMSQSKRLGALNKFKAGEC-NILICTDVASRGLDIPS--VDMVIN 291 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vLv~T~~~~~Gid~~~--~~~vi~ 291 (401)
.+++++||++|.+.++.+++.+...... ....++..+ +...++.|.++.- .++|+|..+++|+|+|+ +..||.
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4559999999999999999999887653 334444443 3478888887655 89999999999999998 578888
Q ss_pred ecCCCC-h-----------------------------hHHHHHhhhcccCCCCceEEEEeccccH--HHHHHHHHHhCCC
Q 015759 292 YDIPTN-S-----------------------------KDYIHRVGRTARAGRTGVAISLVNQYEL--EWYLQIEKLIGKK 339 (401)
Q Consensus 292 ~~~p~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~~~~--~~~~~~~~~~~~~ 339 (401)
...|.. + ..+.|.+||+-|...+.-++++++..-. .+-+.+-+.+...
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPF 634 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCC
Confidence 888853 1 1457999999997666555555555422 2334444444433
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=5.2e-17 Score=155.91 Aligned_cols=296 Identities=19% Similarity=0.241 Sum_probs=192.4
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
..++=|-|+...+|.|||.. .+.++.++++.+.. .+ ..||++|+..| ..|..++..|.. .+......|...
T Consensus 410 yNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~----~G-P~LvivPlstL-~NW~~Ef~kWaP--Sv~~i~YkGtp~ 480 (1157)
T KOG0386|consen 410 YNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM----QG-PFLIIVPLSTL-VNWSSEFPKWAP--SVQKIQYKGTPQ 480 (1157)
T ss_pred cCCCcccccchhcccchHHH-HHHHHHHHHHHccc----CC-CeEEecccccc-CCchhhcccccc--ceeeeeeeCCHH
Confidence 34566789999999999987 45566677766542 23 35899999888 457788888864 355555555432
Q ss_pred hHH--HHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 86 MMQ--QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 86 ~~~--~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
... ........++|+++|++.+.. ....+.--++.++||||.|+|.+.. ..+...++..-.....+++|+|+.
T Consensus 481 ~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~~q~RLLLTGTPL 555 (1157)
T KOG0386|consen 481 QRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYRAQRRLLLTGTPL 555 (1157)
T ss_pred HHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchh--hHHHHHhhccccchhhhhhcCChh
Confidence 211 112223578999999998754 1111233357799999999976632 122222221111112334444421
Q ss_pred ---------------------------------------------------------------------------hHHHH
Q 015759 164 ---------------------------------------------------------------------------KKVKK 168 (401)
Q Consensus 164 ---------------------------------------------------------------------------~~~~~ 168 (401)
+.++.
T Consensus 556 QN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~ 635 (1157)
T KOG0386|consen 556 QNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVED 635 (1157)
T ss_pred hhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhH
Confidence 00000
Q ss_pred ------------------------------------------HHHHhcCCCeEEEecccccccccceEE---EEEcCCCC
Q 015759 169 ------------------------------------------LQRACLKNPVKIEAASKYSTVDTLKQQ---YRFVPAKY 203 (401)
Q Consensus 169 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 203 (401)
..+..|++|..+.-... .+... ...+....
T Consensus 636 viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~-----~~~~~~~~~dL~R~sG 710 (1157)
T KOG0386|consen 636 VIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN-----SYTLHYDIKDLVRVSG 710 (1157)
T ss_pred hhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc-----ccccccChhHHHHhcc
Confidence 00011111111100000 00000 01122344
Q ss_pred hhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCc---eEEEEcCCCC
Q 015759 204 KDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC---NILICTDVAS 278 (401)
Q Consensus 204 ~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vLv~T~~~~ 278 (401)
|...+..++-.. .+++++.||........+..+|.-.++....+.|....++|...++.|..... .+|.+|.+++
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 556666666543 68999999999999999999999999999999999999999999999997553 3789999999
Q ss_pred CCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 015759 279 RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 279 ~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
.|+|+..++.||.||..|++....|+.-|++|.|+.-.|-++
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~ 832 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVL 832 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeee
Confidence 999999999999999999999999999999999976544443
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.71 E-value=2e-14 Score=142.16 Aligned_cols=105 Identities=23% Similarity=0.345 Sum_probs=77.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc-CCceEeecCCCCHHHHHHHHhhcc----CCCceEEEEcCCCCCCCCCCC--CCE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFK----AGECNILICTDVASRGLDIPS--VDM 288 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vLv~T~~~~~Gid~~~--~~~ 288 (401)
.++.++|+++|.+..+.++..|... +.. ....+. ..+.++++.|+ .++..||++|..+++|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 4556899999999999999998753 333 333443 24567776665 467789999999999999998 788
Q ss_pred EEEecCCCC-hh-----------------------------HHHHHhhhcccCCCCceEEEEeccc
Q 015759 289 VINYDIPTN-SK-----------------------------DYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 289 vi~~~~p~s-~~-----------------------------~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
||....|.. +. .+.|.+||.-|..++.-+++++++.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 998887752 11 2358899999987664456666654
No 148
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.70 E-value=7.3e-15 Score=142.71 Aligned_cols=137 Identities=15% Similarity=0.067 Sum_probs=94.4
Q ss_pred EEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHH
Q 015759 13 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 92 (401)
Q Consensus 13 ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 92 (401)
+..+.+|||||.+|+-.+-.. +. .++++||++|...|+.|+.+.++..+. +-.+..+|++.+...+...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~-l~--------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAAT-LR--------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHH-HH--------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHH
Confidence 344446999999987754444 43 677899999999999999999998653 1468889998877654443
Q ss_pred h----CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc---cH---HHHHHHHHhCCCCceEEEEeecC
Q 015759 93 L----GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD---FE---KSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 93 ~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~---~~---~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+ .....|+|+|-..+ ..++.++++||+||-|.-...+ .+ ..+...... .....+++-|||+
T Consensus 233 w~~~~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~-~~~~~lvLgSaTP 303 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH-QHGCALLIGGHAR 303 (665)
T ss_pred HHHHhCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH-HcCCcEEEECCCC
Confidence 3 34689999994443 3478899999999999533211 11 122222222 2345699999998
Q ss_pred chHHHHH
Q 015759 163 TKKVKKL 169 (401)
Q Consensus 163 ~~~~~~~ 169 (401)
+-+....
T Consensus 304 Sles~~~ 310 (665)
T PRK14873 304 TAEAQAL 310 (665)
T ss_pred CHHHHHH
Confidence 7654443
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1.2e-14 Score=142.43 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=91.3
Q ss_pred cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCC--------CC
Q 015759 215 VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP--------SV 286 (401)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~--------~~ 286 (401)
..+.|+||-+.|++..+.+++.|...|+..-+++......+-.-+-+.=+.| .|-|||+++++|.|+. +-
T Consensus 626 ~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GG 703 (1112)
T PRK12901 626 EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGG 703 (1112)
T ss_pred HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCC
Confidence 3789999999999999999999999999988888876655544443433334 5999999999999995 22
Q ss_pred CEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 287 DMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 287 ~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
=+||-...+.|..---|..||+||-|.+|.+..+++-+|.
T Consensus 704 L~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 704 LAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 3788888999999999999999999999999988887653
No 150
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.69 E-value=7e-15 Score=142.93 Aligned_cols=123 Identities=20% Similarity=0.291 Sum_probs=107.0
Q ss_pred CChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCC--ceEEEEcCCC
Q 015759 202 KYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE--CNILICTDVA 277 (401)
Q Consensus 202 ~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vLv~T~~~ 277 (401)
..|...+.-+|... .++++|||+...+..+.|...|.-+|+....+.|..+.++|+.++++|+... ...+++|..+
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 34566666666644 6889999999999999999999999999999999999999999999999754 4577899999
Q ss_pred CCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCC--ceEEEEeccc
Q 015759 278 SRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT--GVAISLVNQY 324 (401)
Q Consensus 278 ~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~--g~~i~~~~~~ 324 (401)
+.|||+.+.+.||+||..|++.--.|..-||+|.|+. -..|.+++..
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999999999999999999964 5566777654
No 151
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=2.4e-15 Score=139.55 Aligned_cols=104 Identities=15% Similarity=0.242 Sum_probs=90.9
Q ss_pred cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccC--CCce-EEEEcCCCCCCCCCCCCCEEEE
Q 015759 215 VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA--GECN-ILICTDVASRGLDIPSVDMVIN 291 (401)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~-vLv~T~~~~~Gid~~~~~~vi~ 291 (401)
....+++|..........+...+++.|.....++|.....+|+.+++.|.. |..+ .|++-.+++.|+|+.+.+|+|.
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 356778887777777888889999999999999999999999999999975 4345 4578889999999999999999
Q ss_pred ecCCCChhHHHHHhhhcccCCCCceEE
Q 015759 292 YDIPTNSKDYIHRVGRTARAGRTGVAI 318 (401)
Q Consensus 292 ~~~p~s~~~~~Q~~GR~~R~g~~g~~i 318 (401)
+|..|++.--.|.+.|+.|.|++..++
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceE
Confidence 999999999999999999999765544
No 152
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.68 E-value=1.4e-14 Score=139.02 Aligned_cols=288 Identities=15% Similarity=0.233 Sum_probs=182.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
.-.+|.+|+|||||.+..- .+...+.. +..++|+++..++|+.++...++..+-. ++....-.++...
T Consensus 50 ~V~vVRSpMGTGKTtaLi~-wLk~~l~~-------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i--- 117 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIR-WLKDALKN-------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYII--- 117 (824)
T ss_pred CeEEEECCCCCCcHHHHHH-HHHHhccC-------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccc---
Confidence 4467789999999987544 33333221 5678999999999999999999875321 2221111111000
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHH-------HHHHhCCCCceEEEEeecC
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLD-------EILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~-------~i~~~~~~~~~~i~~SAT~ 162 (401)
-....+-++++.++|.+.... .+.++++||+||+-..+.+-+.+.+. .+...+.+...+|++-||+
T Consensus 118 ---~~~~~~rLivqIdSL~R~~~~----~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 118 ---DGRPYDRLIVQIDSLHRLDGS----LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred ---cccccCeEEEEehhhhhcccc----cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 011357888888888664321 36679999999999776654433332 2334455666799999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC------------------------------------CChhH
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA------------------------------------KYKDC 206 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~ 206 (401)
.+...+++...........+.+.+....-........+. .....
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 999999888865443322222222221111111111111 01123
Q ss_pred HHHHHHHhc-CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCC
Q 015759 207 YLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPS 285 (401)
Q Consensus 207 ~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~ 285 (401)
+...++... .+.++-||++|...++.+++........+..+++..+..+. +.| ++.+|++-|+++..|+++..
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEeccch
Confidence 333344433 56778889999999999999999999999999887765522 334 46799999999999999865
Q ss_pred --CCEEEEecCC----CChhHHHHHhhhcccCCCCceEEEEecc
Q 015759 286 --VDMVINYDIP----TNSKDYIHRVGRTARAGRTGVAISLVNQ 323 (401)
Q Consensus 286 --~~~vi~~~~p----~s~~~~~Q~~GR~~R~g~~g~~i~~~~~ 323 (401)
.+.|+-|=.| .+..+..|.+||+-... ....++.++.
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 4455555334 23446799999985554 4556666654
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.66 E-value=4.6e-16 Score=111.35 Aligned_cols=81 Identities=47% Similarity=0.820 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccC
Q 015759 232 LLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARA 311 (401)
Q Consensus 232 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 311 (401)
.+++.|+..++.+..+||+++..+|..+++.|.++...+|++|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 015759 312 G 312 (401)
Q Consensus 312 g 312 (401)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 154
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.65 E-value=1.1e-15 Score=127.53 Aligned_cols=137 Identities=21% Similarity=0.213 Sum_probs=88.7
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEE---------
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAV--------- 79 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~--------- 79 (401)
++++++.+|||+|||.+++..+. .+. . +++|++|+..|+.|+.+.+..+.... .....
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~~~~-~l~---------~--~~l~~~p~~~l~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALALIL-ELA---------R--KVLIVAPNISLLEQWYDEFDDFGSEK-YNFFEKSIKPAYDS 91 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHHHHH-HHH---------C--EEEEEESSHHHHHHHHHHHHHHSTTS-EEEEE--GGGCCE-
T ss_pred CCCEEEEECCCCCcChhhhhhhh-ccc---------c--ceeEecCHHHHHHHHHHHHHHhhhhh-hhhccccccccccc
Confidence 68999999999999998764333 332 2 79999999999999999997665432 11110
Q ss_pred ---EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC----------CCCCCccEEEEcchhhccccccHHHHHHHH
Q 015759 80 ---LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG----------FSLGTLKYLVLDEADRLLNDDFEKSLDEIL 146 (401)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~----------~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 146 (401)
..................+++++|.+++......... .....+++||+||+|++....- +..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~ 168 (184)
T PF04851_consen 92 KEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREII 168 (184)
T ss_dssp SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHH
Confidence 0111111122233344688999999999887654221 2345678999999998755441 34444
Q ss_pred HhCCCCceEEEEeecCc
Q 015759 147 NVIPRMRQTYLFSATMT 163 (401)
Q Consensus 147 ~~~~~~~~~i~~SAT~~ 163 (401)
. .+...+++|||||.
T Consensus 169 ~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 169 E--FKAAFILGLTATPF 183 (184)
T ss_dssp H--SSCCEEEEEESS-S
T ss_pred c--CCCCeEEEEEeCcc
Confidence 4 34456999999986
No 155
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.65 E-value=1.9e-14 Score=137.53 Aligned_cols=120 Identities=22% Similarity=0.260 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhc----------------------CCceEeecCCCCHHHHHHH
Q 015759 204 KDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL----------------------GQRAIPISGHMSQSKRLGA 259 (401)
Q Consensus 204 ~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~ 259 (401)
|...+..++..+ -+.+.|||.++......+..+|.-. |...+.+.|......|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 445566666644 5889999999999888888887532 5567888999999999999
Q ss_pred HhhccCCC----ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceE--EEEecc
Q 015759 260 LNKFKAGE----CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVA--ISLVNQ 323 (401)
Q Consensus 260 ~~~f~~~~----~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~--i~~~~~ 323 (401)
..+|++.. ...||+|.+++.|||+-.++.||.||..|+|.--.|.+=|+.|+|+..-| |.|+..
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAq 1276 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQ 1276 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhc
Confidence 99998743 34899999999999999999999999999999999999999999976444 444443
No 156
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.64 E-value=4.3e-14 Score=126.51 Aligned_cols=110 Identities=18% Similarity=0.279 Sum_probs=96.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCC-Cce-EEEEcCCCCCCCCCCCCCEEEEec
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG-ECN-ILICTDVASRGLDIPSVDMVINYD 293 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vLv~T~~~~~Gid~~~~~~vi~~~ 293 (401)
..-+.|||.+.....+.+.-.|.+.|..++-+.|.|++..|...++.|.+. +|. .|++-.+++..+|+....+|+..|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 345789999999999999999999999999999999999999999999874 455 468888999999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCC--CceEEEEecccc
Q 015759 294 IPTNSKDYIHRVGRTARAGR--TGVAISLVNQYE 325 (401)
Q Consensus 294 ~p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~~ 325 (401)
+-|++.--.|...|++|.|+ +-.++.|+-+..
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 99999999999999999996 456777776664
No 157
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=1e-13 Score=138.19 Aligned_cols=109 Identities=18% Similarity=0.259 Sum_probs=78.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCc------eEeecCCCCHHHHHHHHhhccC----CCceEEEEc--CCCCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQR------AIPISGHMSQSKRLGALNKFKA----GECNILICT--DVASRGLDI 283 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~r~~~~~~f~~----~~~~vLv~T--~~~~~Gid~ 283 (401)
.++.++||++|....+.+++.+.+.+.. -.++...-...++..+++.|.. +.-.||+|+ ..+++|||+
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 4688999999999999999888765321 1122222222577889999964 455699998 799999999
Q ss_pred CC--CCEEEEecCCC-Ch------------------------------hHHHHHhhhcccCCCCceEEEEeccc
Q 015759 284 PS--VDMVINYDIPT-NS------------------------------KDYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 284 ~~--~~~vi~~~~p~-s~------------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
++ ++.||.++.|. ++ ..+.|.+||+-|..++--++++++..
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 98 78899999886 21 12359999999987765566666554
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.63 E-value=1e-14 Score=143.58 Aligned_cols=291 Identities=19% Similarity=0.126 Sum_probs=166.9
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH-
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT- 90 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~- 90 (401)
++--|-||+|||++=.- ++..+.. +..+.++.|..-.|.|..|.-+.+++-..--+-.++++.|+.....-.
T Consensus 434 ~vNMASTGcGKT~aNAR-ImyaLsd------~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e 506 (1110)
T TIGR02562 434 GVNMASTGCGKTLANAR-AMYALRD------DKQGARFAIALGLRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFD 506 (1110)
T ss_pred EEEecCCCcchHHHHHH-HHHHhCC------CCCCceEEEEccccceeccchHHHHHhcCCCccceEEEECHHHHHHHHH
Confidence 34459999999985322 2222221 126778899999999999999999876543344556666653221000
Q ss_pred ------------------------------------------HHhC--------CCCCEEEECchHHHHHHhcCC--CCC
Q 015759 91 ------------------------------------------LALG--------KRPHIVVATPGRLMDHLTNTK--GFS 118 (401)
Q Consensus 91 ------------------------------------------~~~~--------~~~~Iii~T~~~l~~~~~~~~--~~~ 118 (401)
..+. -.+.++|||++.++......+ ...
T Consensus 507 ~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~ 586 (1110)
T TIGR02562 507 LSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHI 586 (1110)
T ss_pred HHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhH
Confidence 0000 034699999999987763322 111
Q ss_pred CC----CccEEEEcchhhccccccHHHHHHHHHhCC-CCceEEEEeecCchHHHHHHHHh-----------cCC---CeE
Q 015759 119 LG----TLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKVKKLQRAC-----------LKN---PVK 179 (401)
Q Consensus 119 ~~----~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~-----------~~~---~~~ 179 (401)
+. .-+.|||||+|. ++......+..++..+. -...++++|||+|+.+....... .+. +..
T Consensus 587 l~ll~La~svlVlDEVHa-YD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~ 665 (1110)
T TIGR02562 587 APMLRLMSSDLILDEPDD-YEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLN 665 (1110)
T ss_pred HHHHHhcCCCEEEECCcc-CCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 11 125899999994 44434444555554322 12459999999998765432221 121 111
Q ss_pred EEec---cccc----------------------------ccccceEEEEEcCCCCh-----hHHHHHH-----H---Hhc
Q 015759 180 IEAA---SKYS----------------------------TVDTLKQQYRFVPAKYK-----DCYLVYI-----L---TEV 215 (401)
Q Consensus 180 ~~~~---~~~~----------------------------~~~~~~~~~~~~~~~~~-----~~~l~~~-----l---~~~ 215 (401)
+... .... .+..-...+..++.... ...+... + ..+
T Consensus 666 i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h 745 (1110)
T TIGR02562 666 ICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAH 745 (1110)
T ss_pred eeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 1100 0000 00001111222222211 1111111 1 111
Q ss_pred ----C-CCC----EEEEecchHHHHHHHHHHHhc----C--CceEeecCCCCHHHHHHHHhhc-----------------
Q 015759 216 ----S-ASS----TMVFTRTCDATRLLALMLRNL----G--QRAIPISGHMSQSKRLGALNKF----------------- 263 (401)
Q Consensus 216 ----~-~~~----~ivf~~~~~~~~~l~~~l~~~----~--~~~~~~~~~~~~~~r~~~~~~f----------------- 263 (401)
+ .++ .+|-+++++.+-.++..|-.. + +.++++|+......|..+.++.
T Consensus 746 ~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~ 825 (1110)
T TIGR02562 746 AQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDE 825 (1110)
T ss_pred CccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHH
Confidence 1 222 366777777777777666543 3 3478899999888887666443
Q ss_pred -----cC----CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 264 -----KA----GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 264 -----~~----~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
.+ +...|+|+|++++.|+|+ +.+.+| ..|.+....+|++||+.|.+.
T Consensus 826 i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 826 IIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred HHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 11 356799999999999999 677775 456778999999999999874
No 159
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=1.4e-13 Score=135.31 Aligned_cols=297 Identities=17% Similarity=0.234 Sum_probs=195.3
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHH-HHhccCCCceEEEEEcCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF-EALGSGISLRCAVLVGGV 84 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l-~~~~~~~~i~~~~~~~~~ 84 (401)
...+.++++.+|+|||||.++-++++. +....++++++|..+.+...++.. +++....|..+..+.|..
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~l~----------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~ 1225 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELALLR----------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET 1225 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHhcC----------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc
Confidence 346688999999999999987665554 126778999999999888776555 456666788888888887
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHH------HHHHHHhCCCCceEEEE
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKS------LDEILNVIPRMRQTYLF 158 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~------~~~i~~~~~~~~~~i~~ 158 (401)
+.... +....+|+|+||+++... + ..+..++.|.||.|.+.+ ..+.. +..+...+-+..+++.+
T Consensus 1226 s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~l 1295 (1674)
T KOG0951|consen 1226 SLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVAL 1295 (1674)
T ss_pred ccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEe
Confidence 65433 334578999999998654 2 467789999999997653 22222 45555556666678888
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCC---------hhHHHHHHHHhcCCCCEEEEecchHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY---------KDCYLVYILTEVSASSTMVFTRTCDA 229 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~l~~~~~~~~ivf~~~~~~ 229 (401)
|..+.+. ..+ ..+.....++........ ........+.... +..+..-.-....+.+.+||+++++.
T Consensus 1296 s~~lana-~d~--ig~s~~~v~Nf~p~~R~~-Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~ 1371 (1674)
T KOG0951|consen 1296 SSSLANA-RDL--IGASSSGVFNFSPSVRPV-PLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKH 1371 (1674)
T ss_pred ehhhccc-hhh--ccccccceeecCcccCCC-ceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchh
Confidence 8876542 122 222333333333332222 2222222222221 11111112223367899999999999
Q ss_pred HHHHHHHHHhc----------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCC
Q 015759 230 TRLLALMLRNL----------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVD 287 (401)
Q Consensus 230 ~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~ 287 (401)
|..++.-+-.. .....+-|.+++..+...+-..|..|.+.|+|...- ..|+-. ..+
T Consensus 1372 ~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~-~~~ 1449 (1674)
T KOG0951|consen 1372 ARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKL-KAH 1449 (1674)
T ss_pred hhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccc-cce
Confidence 88776544211 122333388999999888889999999999988776 667666 344
Q ss_pred EEEE-----ec------CCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHH
Q 015759 288 MVIN-----YD------IPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQ 331 (401)
Q Consensus 288 ~vi~-----~~------~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~ 331 (401)
.||. || .+.+..++.|+.|++.| .|.|+++++....++++.
T Consensus 1450 lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1450 LVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred EEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 4443 33 33567889999999988 568999998887666544
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.59 E-value=3.7e-12 Score=116.53 Aligned_cols=289 Identities=22% Similarity=0.198 Sum_probs=197.6
Q ss_pred CCCceeEEEEcCcHHHHHHHHHHHHHhccC-C------------Cce------EEEEEcCCChHHHHHH-----------
Q 015759 43 TVPAFFACVLSPTRELAIQISEQFEALGSG-I------------SLR------CAVLVGGVDMMQQTLA----------- 92 (401)
Q Consensus 43 ~~~~~~~lil~P~~~L~~q~~~~l~~~~~~-~------------~i~------~~~~~~~~~~~~~~~~----------- 92 (401)
....++||||+|+|..|-++.+.+.++... . ++. ...-............
T Consensus 34 GftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Fr 113 (442)
T PF06862_consen 34 GFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFR 113 (442)
T ss_pred CCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEE
Confidence 346889999999999999999988876543 1 100 0000000000000000
Q ss_pred -----------h---CCCCCEEEECchHHHHHHhc----CCC-CCCCCccEEEEcchhhccccccHHH--HHHHHHhCCC
Q 015759 93 -----------L---GKRPHIVVATPGRLMDHLTN----TKG-FSLGTLKYLVLDEADRLLNDDFEKS--LDEILNVIPR 151 (401)
Q Consensus 93 -----------~---~~~~~Iii~T~~~l~~~~~~----~~~-~~~~~~~~iIiDE~h~~~~~~~~~~--~~~i~~~~~~ 151 (401)
+ ...+|||||+|=-|...+.. ... -.++++.++|+|.+|.+.-.+|... +...++..|+
T Consensus 114 lGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 114 LGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCC
Confidence 0 12679999999998776663 111 2478999999999997666554332 2223333332
Q ss_pred ---------------------CceEEEEeecCchHHHHHHHHhcCCCeEE-Eec--cc-----ccccccceEEEEEcCCC
Q 015759 152 ---------------------MRQTYLFSATMTKKVKKLQRACLKNPVKI-EAA--SK-----YSTVDTLKQQYRFVPAK 202 (401)
Q Consensus 152 ---------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~--~~-----~~~~~~~~~~~~~~~~~ 202 (401)
.+|++++|+...+++..+....+.+.... ... .. ......+.|.+...+..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 25999999999999999998866554221 111 11 12234556666665532
Q ss_pred Ch-------hHH----HHHHHH-hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceE
Q 015759 203 YK-------DCY----LVYILT-EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 270 (401)
Q Consensus 203 ~~-------~~~----l~~~l~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 270 (401)
.. ..+ +...+. ......+|||+++--.--.+.++|++.++..+.++...+..+-.+.-..|..|+..+
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceE
Confidence 21 111 112222 456688999999999999999999999999999999999999999999999999999
Q ss_pred EEEcC--CCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC------CceEEEEeccccHHHHHH
Q 015759 271 LICTD--VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR------TGVAISLVNQYELEWYLQ 331 (401)
Q Consensus 271 Lv~T~--~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~------~g~~i~~~~~~~~~~~~~ 331 (401)
|+.|. -.-+-..+.++++||+|.+|..+.-|...++-.+.... ...|.++++..|.-.+..
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 99998 45556778899999999999999988887765544332 468889998887654443
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.59 E-value=1.1e-12 Score=133.25 Aligned_cols=298 Identities=17% Similarity=0.154 Sum_probs=173.6
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
.++.-+|+.-+|||||++.+. +...+.... ..+.+++|+-++.|-.|+.+.+..++....... ...+..
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~-~A~~l~~~~------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~ 340 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFK-LARLLLELP------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTS 340 (962)
T ss_pred cCCceEEEeecCCchHHHHHH-HHHHHHhcc------CCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHH
Confidence 457799999999999998554 444444433 788899999999999999999999875432211 233333
Q ss_pred HHHHHhCC-CCCEEEECchHHHHHHhcCCCC-CCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 88 QQTLALGK-RPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 88 ~~~~~~~~-~~~Iii~T~~~l~~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
.-...+.. ...|+|+|.++|.......... .-.+--+||+||||+. .++..-..+...+++ ...++||+||...
T Consensus 341 ~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~~-a~~~gFTGTPi~~ 416 (962)
T COG0610 341 ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALKK-AIFIGFTGTPIFK 416 (962)
T ss_pred HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhcc-ceEEEeeCCcccc
Confidence 33333433 3589999999998877654111 1223347888999974 344455555556655 5589999998533
Q ss_pred HHHH-HHHhcCCCeEEEeccccccc-ccceEEEEEc-C-----CCCh-h-------------------------------
Q 015759 166 VKKL-QRACLKNPVKIEAASKYSTV-DTLKQQYRFV-P-----AKYK-D------------------------------- 205 (401)
Q Consensus 166 ~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-----~~~~-~------------------------------- 205 (401)
-..- ....++.............. ..+...|... . .+.+ .
T Consensus 417 ~d~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 496 (962)
T COG0610 417 EDKDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAM 496 (962)
T ss_pred ccccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhc
Confidence 2222 12333333322222111111 1111111111 0 0000 0
Q ss_pred ------HHHHHHH----H-hcCCCCEEEEecchHHHHHHHHHHHhcCC---------c-eEee-------------cCCC
Q 015759 206 ------CYLVYIL----T-EVSASSTMVFTRTCDATRLLALMLRNLGQ---------R-AIPI-------------SGHM 251 (401)
Q Consensus 206 ------~~l~~~l----~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~~---------~-~~~~-------------~~~~ 251 (401)
.....+. . .....++++.++++..+..+++....... . +..+ |..
T Consensus 497 ~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~- 575 (962)
T COG0610 497 LAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK- 575 (962)
T ss_pred chHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-
Confidence 0000011 1 22456778888887755444444322100 0 0000 111
Q ss_pred CHHHHHHHHhhc--cCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC----CceEEEEec
Q 015759 252 SQSKRLGALNKF--KAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR----TGVAISLVN 322 (401)
Q Consensus 252 ~~~~r~~~~~~f--~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~----~g~~i~~~~ 322 (401)
....+.....+| .+...++||.++++-+|+|-|.+++++ +|.|.-.-.++|.+.|+.|.-. .|.++.++.
T Consensus 576 ~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 576 LKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 122233444553 345688999999999999999999887 7899888899999999999742 255555555
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.52 E-value=4.1e-14 Score=107.77 Aligned_cols=137 Identities=19% Similarity=0.162 Sum_probs=83.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
.+|+--++..++|+|||.-.+.-++...+. .+.++|||.|||.++..+.+.|+.. ++++.....+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~--------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~--- 66 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIK--------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM--- 66 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHH--------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHH--------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeee---
Confidence 356677889999999998766655655554 7888999999999999999888754 2322211000
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH---HHHHHHHHhCCCCceEEEEeecCc
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE---KSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~---~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
. ....+.-|-++|+..+...+.+. ....++++||+||||. .+..-- ..+... ... ....++++|||+|
T Consensus 67 -~---~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~-~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 67 -R---THFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHF-TDPTSIAARGYLREL-AES-GEAKVIFMTATPP 137 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT---SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-T
T ss_pred -c---cccCCCcccccccHHHHHHhcCc--ccccCccEEEEecccc-CCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCC
Confidence 0 11234678899999998887773 3578999999999994 342211 122222 122 2246999999998
Q ss_pred hHHH
Q 015759 164 KKVK 167 (401)
Q Consensus 164 ~~~~ 167 (401)
....
T Consensus 138 G~~~ 141 (148)
T PF07652_consen 138 GSED 141 (148)
T ss_dssp T---
T ss_pred CCCC
Confidence 7643
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.48 E-value=4.4e-12 Score=122.90 Aligned_cols=306 Identities=19% Similarity=0.179 Sum_probs=187.5
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
.+.-+..-+.-+-||-|||+++.+|+.-..+ .+..+.+++..--|+.--++++..+...+++.+.....+.
T Consensus 89 ~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL---------~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m 159 (822)
T COG0653 89 GIVLHLGDIAEMRTGEGKTLVATLPAYLNAL---------AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGM 159 (822)
T ss_pred hhhhcCCceeeeecCCchHHHHHHHHHHHhc---------CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCC
Confidence 3444566788999999999999998887766 6667899999999999989999988888899999988887
Q ss_pred ChHHHHHHhCCCCCEEEECchHH-HHHHhcC-----CCCCCCCccEEEEcchhhcccc----------------ccHHHH
Q 015759 85 DMMQQTLALGKRPHIVVATPGRL-MDHLTNT-----KGFSLGTLKYLVLDEADRLLND----------------DFEKSL 142 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~-----~~~~~~~~~~iIiDE~h~~~~~----------------~~~~~~ 142 (401)
+...+.... .+||.++|-..| .+++... .......+.+.|+||++.++=. .+...+
T Consensus 160 ~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~ 237 (822)
T COG0653 160 SPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYKKV 237 (822)
T ss_pred ChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchHHHHH
Confidence 666555544 489999997655 2222211 1112345788899999863210 112222
Q ss_pred HHHHHhCCCC----------------------------------------------------------------------
Q 015759 143 DEILNVIPRM---------------------------------------------------------------------- 152 (401)
Q Consensus 143 ~~i~~~~~~~---------------------------------------------------------------------- 152 (401)
..+...+...
T Consensus 238 ~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD 317 (822)
T COG0653 238 DDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVD 317 (822)
T ss_pred HHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEe
Confidence 2232222111
Q ss_pred -----------------------------------------------ceEEEEeecCchHHHHHHHHhcCCCeEEEeccc
Q 015759 153 -----------------------------------------------RQTYLFSATMTKKVKKLQRACLKNPVKIEAASK 185 (401)
Q Consensus 153 -----------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
....+||+|...+..++...+......+.....
T Consensus 318 ~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp 397 (822)
T COG0653 318 EFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRP 397 (822)
T ss_pred cccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCCCc
Confidence 011222222222222222222111111111111
Q ss_pred ccccccceEEEEEcCCCChhHHHHHHHH--hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhc
Q 015759 186 YSTVDTLKQQYRFVPAKYKDCYLVYILT--EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 263 (401)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 263 (401)
....+. ....+.....|...+...+. +..+.|+||-+.+++..+.+.+.|.+.|++..+++..-...+-+.+.+.-
T Consensus 398 ~~R~D~--~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG 475 (822)
T COG0653 398 IIRLDE--PDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAG 475 (822)
T ss_pred ccCCCC--ccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcC
Confidence 110000 01111112233333333332 34789999999999999999999999999998888887644444443333
Q ss_pred cCCCceEEEEcCCCCCCCCCCCCC-----------EEEEecCCCChhHHHHHhhhcccCCCCceEEEEecccc
Q 015759 264 KAGECNILICTDVASRGLDIPSVD-----------MVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE 325 (401)
Q Consensus 264 ~~~~~~vLv~T~~~~~Gid~~~~~-----------~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 325 (401)
+.| .|-|||+++++|-|+.--. +||--....|-.---|..||+||.|.+|.+-.+++-+|
T Consensus 476 ~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 476 QPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred CCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 333 5889999999999984211 45544444555555699999999998888877776544
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=5.2e-12 Score=130.84 Aligned_cols=123 Identities=21% Similarity=0.289 Sum_probs=103.5
Q ss_pred ChhHHHHHHH-H--hcCCC--CEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCC--CceEEEEcC
Q 015759 203 YKDCYLVYIL-T--EVSAS--STMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG--ECNILICTD 275 (401)
Q Consensus 203 ~~~~~l~~~l-~--~~~~~--~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vLv~T~ 275 (401)
.+...+..++ . ...+. ++++|++.......+...+...++....++|.++...|...+++|.++ ..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 3455555555 2 22455 899999999999999999999998999999999999999999999986 445778888
Q ss_pred CCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCce--EEEEecccc
Q 015759 276 VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV--AISLVNQYE 325 (401)
Q Consensus 276 ~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~--~i~~~~~~~ 325 (401)
+++.|+|+...++||++|+.|++....|+..|+.|.|++.. ++.++..+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 99999999999999999999999999999999999997644 455555543
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.38 E-value=3.3e-12 Score=115.29 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=87.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
...+.+|++.++|+|||...+. ++..+...... .....+||+||. .+..||..++.++.....+++..+.+....
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~---~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~ 97 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQ---RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSER 97 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTT---SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHH
T ss_pred cCCCCEEEEECCCCCchhhhhh-hhhhhhhcccc---ccccceeEeecc-chhhhhhhhhcccccccccccccccccccc
Confidence 4567899999999999987654 34433332110 012249999999 788999999999986545677777776522
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhc--CCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTN--TKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~--~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
...........+++|+|++.+...... ...+...++++||+||+|.+.+.. ......+..+. ....+++||||.
T Consensus 98 ~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~--s~~~~~l~~l~-~~~~~lLSgTP~ 173 (299)
T PF00176_consen 98 RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD--SKRYKALRKLR-ARYRWLLSGTPI 173 (299)
T ss_dssp HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT--SHHHHHHHCCC-ECEEEEE-SS-S
T ss_pred ccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc--ccccccccccc-cceEEeeccccc
Confidence 222233344689999999999710000 000112348999999999884422 23333333354 455889999984
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.22 E-value=6.1e-11 Score=105.16 Aligned_cols=64 Identities=27% Similarity=0.115 Sum_probs=50.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
...+.+|+++++.||||+|||+++++|++.++....... .+.+++|+++|..+.+|....+++.
T Consensus 21 ~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 21 KRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHHhc
Confidence 345678999999999999999999999988766532110 1247999999999999988777765
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.22 E-value=6.1e-11 Score=105.16 Aligned_cols=64 Identities=27% Similarity=0.115 Sum_probs=50.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
...+.+|+++++.||||+|||+++++|++.++....... .+.+++|+++|..+.+|....+++.
T Consensus 21 ~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~---~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 21 KRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI---QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc---cccceeEEeccHHHHHHHHHHHHhc
Confidence 345678999999999999999999999988766532110 1247999999999999988777765
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.18 E-value=1.9e-09 Score=101.96 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=87.5
Q ss_pred CCCEEEEecchHHHHHHHHHHHhcCC------------------ceEeecCCCCHHHHHHHHhhccCCC---ceEEEEcC
Q 015759 217 ASSTMVFTRTCDATRLLALMLRNLGQ------------------RAIPISGHMSQSKRLGALNKFKAGE---CNILICTD 275 (401)
Q Consensus 217 ~~~~ivf~~~~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~~~---~~vLv~T~ 275 (401)
+.++|+|..+......+.+.|.+..+ ....+.|..+..+|++++++|.+.- .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 56889999998888888888876522 2346677788899999999998632 35889999
Q ss_pred CCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 276 VASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 276 ~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
++..|+|+-+.+.++.+|..|++..-.|.+-|+.|.|+...|+++-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 9999999999999999999999999999999999999876666543
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.2e-09 Score=95.86 Aligned_cols=306 Identities=23% Similarity=0.247 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHhhh----------------------cCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCc-eEE-
Q 015759 23 TGAFALPILQALLEIAEN----------------------QRTVPAFFACVLSPTRELAIQISEQFEALGSGISL-RCA- 78 (401)
Q Consensus 23 T~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i-~~~- 78 (401)
+..|++-++..+++..+. +-....++||||||+|+-|-.+...+..+..+.+- +..
T Consensus 248 R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V 327 (698)
T KOG2340|consen 248 RSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEV 327 (698)
T ss_pred hhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhh
Confidence 456888888888764320 01225788999999999999999988876332210 000
Q ss_pred -------EEEcC----------------------CCh--------HHHHHHh---CCCCCEEEECchHHHHHHhcCC---
Q 015759 79 -------VLVGG----------------------VDM--------MQQTLAL---GKRPHIVVATPGRLMDHLTNTK--- 115 (401)
Q Consensus 79 -------~~~~~----------------------~~~--------~~~~~~~---~~~~~Iii~T~~~l~~~~~~~~--- 115 (401)
.-.++ +.. ......+ ...+||+||+|--|.-.+.+..
T Consensus 328 ~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkk 407 (698)
T KOG2340|consen 328 WNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKK 407 (698)
T ss_pred hhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCccc
Confidence 00111 100 0011111 1268999999998866665321
Q ss_pred -CC-CCCCccEEEEcchhhccccccHHHHHHH--HHhCCCC---------------------ceEEEEeecCchHHHHHH
Q 015759 116 -GF-SLGTLKYLVLDEADRLLNDDFEKSLDEI--LNVIPRM---------------------RQTYLFSATMTKKVKKLQ 170 (401)
Q Consensus 116 -~~-~~~~~~~iIiDE~h~~~~~~~~~~~~~i--~~~~~~~---------------------~~~i~~SAT~~~~~~~~~ 170 (401)
.+ .++.+.++|||-+|.++..+|...+.-+ +..+|.. +|+++||+-..+....+.
T Consensus 408 rd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~f 487 (698)
T KOG2340|consen 408 RDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLF 487 (698)
T ss_pred ccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHH
Confidence 12 3678899999999988777765443322 3333322 488899988888888888
Q ss_pred HHhcCCCeEEEeccccccccc-------ceEEEEEcC--C--C---Chh-HHHHHHH---HhcCCCCEEEEecchHHHHH
Q 015759 171 RACLKNPVKIEAASKYSTVDT-------LKQQYRFVP--A--K---YKD-CYLVYIL---TEVSASSTMVFTRTCDATRL 232 (401)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~--~---~~~-~~l~~~l---~~~~~~~~ivf~~~~~~~~~ 232 (401)
...+.+....-.......... +.|.+.... . + .+. -++..++ .......+|||.++--.--+
T Consensus 488 n~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVR 567 (698)
T KOG2340|consen 488 NQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVR 567 (698)
T ss_pred HHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHH
Confidence 877765432211111111111 111111111 1 1 111 1122222 22234568999999988889
Q ss_pred HHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC--CCCCCCCCCCCCEEEEecCCCChhHHH---HHhhh
Q 015759 233 LALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD--VASRGLDIPSVDMVINYDIPTNSKDYI---HRVGR 307 (401)
Q Consensus 233 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~--~~~~Gid~~~~~~vi~~~~p~s~~~~~---Q~~GR 307 (401)
+.+++++.++....++.-.+...-.+.-+.|..|+..||+-|. -.-+-.++.+++.||+|.+|..|.-|. .+.+|
T Consensus 568 vRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k 647 (698)
T KOG2340|consen 568 VRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDK 647 (698)
T ss_pred HHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhh
Confidence 9999999998888888877777777777889999999999998 455668899999999999999988765 45556
Q ss_pred cccCCC----CceEEEEeccccHHH
Q 015759 308 TARAGR----TGVAISLVNQYELEW 328 (401)
Q Consensus 308 ~~R~g~----~g~~i~~~~~~~~~~ 328 (401)
+.-.|+ ...|.++++..|.-.
T Consensus 648 ~~~~gn~d~d~~t~~ilytKyD~i~ 672 (698)
T KOG2340|consen 648 TTSQGNTDLDIFTVRILYTKYDRIR 672 (698)
T ss_pred hhccCCccccceEEEEEeechhhHH
Confidence 544332 245777777766443
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.88 E-value=2.2e-08 Score=96.56 Aligned_cols=305 Identities=18% Similarity=0.234 Sum_probs=175.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH-hccCCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~-~~~~~~i~~~~~ 80 (401)
|+.+...+.-+++.+.||+|||..+.-.+++.++.+... ...-+.+.-|++..+..+++++.+ -+...+-.+..-
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g----~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG----ASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc----ccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 345566777899999999999999888888888765421 344467788888877777776543 222111111110
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHH-HHHHHHHh----------
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEK-SLDEILNV---------- 148 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~-~~~~i~~~---------- 148 (401)
.. .........-.|..||-+-++..+.+. +..+.++|+||.|..-- ..|-. .+..+...
T Consensus 462 vR-----f~Sa~prpyg~i~fctvgvllr~~e~g----lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lms 532 (1282)
T KOG0921|consen 462 VR-----FDSATPRPYGSIMFCTVGVLLRMMENG----LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMS 532 (1282)
T ss_pred cc-----ccccccccccceeeeccchhhhhhhhc----ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhh
Confidence 00 000011113458999999998877763 44677899999995321 11211 11111111
Q ss_pred -----------CCCCceEEEEeecCchHHHHHHHHhcCCCeEEE-----------eccccccccc-c-eEEEEEcCCC--
Q 015759 149 -----------IPRMRQTYLFSATMTKKVKKLQRACLKNPVKIE-----------AASKYSTVDT-L-KQQYRFVPAK-- 202 (401)
Q Consensus 149 -----------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-~-~~~~~~~~~~-- 202 (401)
+...++..+.++|++-.. +....+..+...- .......... - +..-..++..
T Consensus 533 atIdTd~f~~~f~~~p~~~~~grt~pvq~--F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 533 ATIDTDLFTNFFSSIPDVTVHGRTFPVQS--FFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred cccchhhhhhhhccccceeeccccccHHH--HHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhc
Confidence 122234455555554321 1111111111000 0000000000 0 0000000000
Q ss_pred -------------C-hhHHHHHHHH----hcCCCCEEEEecchHHHHHHHHHHHhc-------CCceEeecCCCCHHHHH
Q 015759 203 -------------Y-KDCYLVYILT----EVSASSTMVFTRTCDATRLLALMLRNL-------GQRAIPISGHMSQSKRL 257 (401)
Q Consensus 203 -------------~-~~~~l~~~l~----~~~~~~~ivf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~ 257 (401)
. -...+..++. ..-.+-+++|.+-......|...|..+ .+.....|+.....+..
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqr 690 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQR 690 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhh
Confidence 0 0011111222 223567899999998888888877654 45678889999999999
Q ss_pred HHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC------------------CChhHHHHHhhhcccCCCCceEEE
Q 015759 258 GALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP------------------TNSKDYIHRVGRTARAGRTGVAIS 319 (401)
Q Consensus 258 ~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p------------------~s~~~~~Q~~GR~~R~g~~g~~i~ 319 (401)
++.+-...|..+++++|.+.+..+.+.++..||..+.. .|....+||.||+||. ++|.|+.
T Consensus 691 kvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~ 769 (1282)
T KOG0921|consen 691 KVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFH 769 (1282)
T ss_pred hccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccccccc
Confidence 99999999999999999999998888776666643311 2455678999999996 4788877
Q ss_pred Eec
Q 015759 320 LVN 322 (401)
Q Consensus 320 ~~~ 322 (401)
+++
T Consensus 770 lcs 772 (1282)
T KOG0921|consen 770 LCS 772 (1282)
T ss_pred ccH
Confidence 764
No 171
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.82 E-value=4.3e-07 Score=87.67 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=54.0
Q ss_pred ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCC--CCce-----------EEEEeccccHHHHHHHHH
Q 015759 268 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAG--RTGV-----------AISLVNQYELEWYLQIEK 334 (401)
Q Consensus 268 ~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g--~~g~-----------~i~~~~~~~~~~~~~~~~ 334 (401)
.+.+.+-.++-+|+|=|++=.++-+....|...=.|-+||..|.. +.|. -.++++..+.+....+.+
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lqk 563 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQK 563 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHHH
Confidence 689999999999999999999999999999989999999999963 2222 234556666666666655
Q ss_pred Hh
Q 015759 335 LI 336 (401)
Q Consensus 335 ~~ 336 (401)
..
T Consensus 564 EI 565 (985)
T COG3587 564 EI 565 (985)
T ss_pred HH
Confidence 44
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.80 E-value=5.5e-08 Score=84.06 Aligned_cols=113 Identities=20% Similarity=0.204 Sum_probs=85.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
.-|+...||-|||++..+|+.-..+ .+..|-|++.+..|+..=++++..+...+|+.+..+.++.+...+.
T Consensus 92 G~laEm~TGEGKTli~~l~a~~~AL---------~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~ 162 (266)
T PF07517_consen 92 GRLAEMKTGEGKTLIAALPAALNAL---------QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERR 162 (266)
T ss_dssp TSEEEESTTSHHHHHHHHHHHHHHT---------TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHH
T ss_pred ceeEEecCCCCcHHHHHHHHHHHHH---------hcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHH
Confidence 3389999999999998887776666 6777999999999999999999998888899999999988765544
Q ss_pred HHhCCCCCEEEECchHHHH-HHhcCC----CC-CCCCccEEEEcchhhcc
Q 015759 91 LALGKRPHIVVATPGRLMD-HLTNTK----GF-SLGTLKYLVLDEADRLL 134 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~-~~~~~~----~~-~~~~~~~iIiDE~h~~~ 134 (401)
... .++|+++|...|.- ++...- .. ....++++||||+|.++
T Consensus 163 ~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 163 EAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 443 37899999988743 333211 11 24678999999999754
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.79 E-value=8e-08 Score=95.93 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHH-----Hhc----cCCCceEE
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE-----ALG----SGISLRCA 78 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~-----~~~----~~~~i~~~ 78 (401)
...++.+.++||+|||.+|+-.++..... - ...++||+||+.++.+.+...++ .+. ....+.+.
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~-~------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQK-Y------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHH-c------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 34689999999999999988766554332 2 45679999999999888776654 111 12235565
Q ss_pred EEEcCC-------ChHHHHHHh--C-----CCCCEEEECchHHHHHHhcCCC----------CCCC----CccEEEEcch
Q 015759 79 VLVGGV-------DMMQQTLAL--G-----KRPHIVVATPGRLMDHLTNTKG----------FSLG----TLKYLVLDEA 130 (401)
Q Consensus 79 ~~~~~~-------~~~~~~~~~--~-----~~~~Iii~T~~~l~~~~~~~~~----------~~~~----~~~~iIiDE~ 130 (401)
.+.++. ......... . ...+|+++|.++|......... .++. .--+||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 665443 111111111 1 1468999999988553210000 1111 1137999999
Q ss_pred hhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 131 DRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 131 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
|++-.. ...+..+ ..+.+.. ++.+|||.+.
T Consensus 211 h~~~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred CCCCcc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 987442 2345555 4444444 6779999976
No 174
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.78 E-value=3.6e-08 Score=96.00 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=89.5
Q ss_pred CCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCC-ce-EEEEcCCCCCCCCCCCCCEEEEecCC
Q 015759 218 SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE-CN-ILICTDVASRGLDIPSVDMVINYDIP 295 (401)
Q Consensus 218 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vLv~T~~~~~Gid~~~~~~vi~~~~p 295 (401)
.+++||++-...+..+...|...++....+.|.|+...|...+..|..+. .. .+++..++..|+|+..+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999988999999999999999999999998543 22 45888899999999999999999999
Q ss_pred CChhHHHHHhhhcccCCCCceE
Q 015759 296 TNSKDYIHRVGRTARAGRTGVA 317 (401)
Q Consensus 296 ~s~~~~~Q~~GR~~R~g~~g~~ 317 (401)
|++....|.+-|++|.|+.-.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v 641 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPV 641 (674)
T ss_pred cChHHHHHHHHHHHHhccccee
Confidence 9999999999999999976444
No 175
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.72 E-value=3.3e-09 Score=103.78 Aligned_cols=128 Identities=24% Similarity=0.291 Sum_probs=94.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
-..++++-+|||+|||++|-+.++..+... ++.++++++|..+|+..-.+...+.....++++.-+.|+....
T Consensus 942 td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-------p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd 1014 (1230)
T KOG0952|consen 942 TDLNFLLGAPTGSGKTVVAELAIFRALSYY-------PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD 1014 (1230)
T ss_pred cchhhhhcCCccCcchhHHHHHHHHHhccC-------CCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC
Confidence 346788999999999999988766655443 6688999999999998877776654444478888888876654
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCC-CCCCccEEEEcchhhccccccHHHHHHHH
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFEKSLDEIL 146 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 146 (401)
.. .. ..++++|+||+++..+..++... -++++..+|+||.|. ...++++.+..+.
T Consensus 1015 ~~--~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl-lg~~rgPVle~iv 1070 (1230)
T KOG0952|consen 1015 VK--AV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL-LGEDRGPVLEVIV 1070 (1230)
T ss_pred hh--he-ecCceEEcccccccCccccccchhhhccccceeeccccc-ccCCCcceEEEEe
Confidence 21 11 35899999999998877754432 467889999999995 4555555555443
No 176
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.66 E-value=9.7e-08 Score=77.72 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=75.3
Q ss_pred cCCCCEEEEecchHHHHHHHHHHHhcCC--ceEeecCCCCHHHHHHHHhhccCCCceEEEEcC--CCCCCCCCCC--CCE
Q 015759 215 VSASSTMVFTRTCDATRLLALMLRNLGQ--RAIPISGHMSQSKRLGALNKFKAGECNILICTD--VASRGLDIPS--VDM 288 (401)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~--~~~~Gid~~~--~~~ 288 (401)
..++.++||++|....+.+.+.++.... ...++.. +..++..+++.|.+++..||+++. .+++|+|+++ ++.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 3458999999999999999999987642 1222222 355778899999999999999999 9999999997 778
Q ss_pred EEEecCCCChh------------------------------HHHHHhhhcccCCCCceEEEEeccc
Q 015759 289 VINYDIPTNSK------------------------------DYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 289 vi~~~~p~s~~------------------------------~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
||....|.... ...|.+||+-|..++--++++++..
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 99988885211 2358999999988776666677664
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.54 E-value=5.5e-07 Score=78.13 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=97.6
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
+..+++-..||.||--...--+++.++. ..++.|+++.+..|.....+.++.++.. .+.+..+..-...
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~--------Gr~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~-- 130 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLR--------GRKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG-- 130 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHc--------CCCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC--
Confidence 4668889999999987766656776664 4557999999999999999999988754 3444433321100
Q ss_pred HHHHhCCCCCEEEECchHHHHHHhcCCC--CC---------CCCccEEEEcchhhcccccc--------HHHHHHHHHhC
Q 015759 89 QTLALGKRPHIVVATPGRLMDHLTNTKG--FS---------LGTLKYLVLDEADRLLNDDF--------EKSLDEILNVI 149 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~~---------~~~~~~iIiDE~h~~~~~~~--------~~~~~~i~~~~ 149 (401)
....-...|+++|+..|......... -. -..-.+|||||||...+... +..+..+-+.+
T Consensus 131 --~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L 208 (303)
T PF13872_consen 131 --DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL 208 (303)
T ss_pred --cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC
Confidence 00112456999999998776532111 01 12336999999998766432 23455566778
Q ss_pred CCCceEEEEeecCchHHHHH
Q 015759 150 PRMRQTYLFSATMTKKVKKL 169 (401)
Q Consensus 150 ~~~~~~i~~SAT~~~~~~~~ 169 (401)
|+.+ ++++|||...+..++
T Consensus 209 P~AR-vvY~SATgasep~Nm 227 (303)
T PF13872_consen 209 PNAR-VVYASATGASEPRNM 227 (303)
T ss_pred CCCc-EEEecccccCCCcee
Confidence 7665 999999986544433
No 178
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.54 E-value=7.3e-06 Score=82.04 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=54.9
Q ss_pred CCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 96 RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 96 ~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
...|+++||..+..-+..+. +++..+..|||||||++........+.+++....+..-+.+||+.|
T Consensus 7 ~ggi~~~T~rIl~~DlL~~r-i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGI-IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCC-CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 46799999999988777655 6889999999999999988766677777777777777799999995
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.32 E-value=2.3e-06 Score=74.08 Aligned_cols=63 Identities=21% Similarity=0.225 Sum_probs=41.2
Q ss_pred cccCCcc-EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 5 FCDAGKD-LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 5 ~~~~g~~-~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
.+++... .+|.||+|+|||.+.. .++..+...........+.++|+++|+..-+.++.+.+.+
T Consensus 12 ~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 12 SALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4455666 8999999999997643 3444442110000011778899999999999999999888
No 180
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.31 E-value=2.5e-06 Score=78.48 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=69.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
+-++|.|.+|||||+.++- ++..+.... .+..++++++...|...+.+.+......
T Consensus 2 ~v~~I~G~aGTGKTvla~~-l~~~l~~~~------~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------- 57 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALN-LAKELQNSE------EGKKVLYLCGNHPLRNKLREQLAKKYNP----------------- 57 (352)
T ss_pred eEEEEEecCCcCHHHHHHH-HHHHhhccc------cCCceEEEEecchHHHHHHHHHhhhccc-----------------
Confidence 4578999999999987543 344441111 5677899999999988888888764300
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-------cHHHHHHHHHh
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-------FEKSLDEILNV 148 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-------~~~~~~~i~~~ 148 (401)
......+..+..+.+.... .......+++|||||||++.... ....+..++..
T Consensus 58 -----~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0112334445555443331 11246789999999999987731 23556666655
No 181
>PF13245 AAA_19: Part of AAA domain
Probab=98.24 E-value=3e-06 Score=58.57 Aligned_cols=53 Identities=30% Similarity=0.439 Sum_probs=37.4
Q ss_pred Ccc-EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHH
Q 015759 9 GKD-LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 66 (401)
Q Consensus 9 g~~-~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l 66 (401)
+.+ ++|.||+|||||.+.+-. +..+.... .. .+.++++++|++..+.++.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~-i~~l~~~~---~~-~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAAR-IAELLAAR---AD-PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHH-HHHHHHHh---cC-CCCeEEEECCCHHHHHHHHHHH
Confidence 444 556999999999775443 33333211 11 2667999999999999998888
No 182
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.21 E-value=5.7e-06 Score=80.53 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=51.5
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhh---------c--------------------CC----CCcee
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAEN---------Q--------------------RT----VPAFF 48 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~---------~--------------------~~----~~~~~ 48 (401)
||..+..+.++++.+|||+|||++.+...+.+..+.... . .. ...++
T Consensus 33 vl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~~~~ipk 112 (945)
T KOG1132|consen 33 VLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIACYTGIPK 112 (945)
T ss_pred HHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCccccccCCce
Confidence 345667889999999999999999876666655442200 0 00 13677
Q ss_pred EEEEcCcHHHHHHHHHHHHHhccC
Q 015759 49 ACVLSPTRELAIQISEQFEALGSG 72 (401)
Q Consensus 49 ~lil~P~~~L~~q~~~~l~~~~~~ 72 (401)
+.|-+-|-.-..|+.+++++.+..
T Consensus 113 IyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 113 IYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred EEEecchHHHHHHHHHHHhhcCCC
Confidence 888888888899999999987654
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.14 E-value=1.3e-06 Score=72.56 Aligned_cols=135 Identities=19% Similarity=0.105 Sum_probs=63.9
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH-------HHHHHHhccCCCc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-------SEQFEALGSGISL 75 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-------~~~l~~~~~~~~i 75 (401)
+.++.+.+-+++.||.|||||+.++..+++.+... ...+++|.-|..+..+.+ .+.+.-+...+.-
T Consensus 13 ~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-------~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d 85 (205)
T PF02562_consen 13 LDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-------EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYD 85 (205)
T ss_dssp HHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-------S-SEEEEEE-S--TT----SS---------TTTHHHHH
T ss_pred HHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------CCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 34556677899999999999999888888777652 566788888877532211 1111101000000
Q ss_pred eEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceE
Q 015759 76 RCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQT 155 (401)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 155 (401)
....+.+.... ..+.....|-+.++..+ ++ ..++ -.+||+|||+.+ -...+..++.++....++
T Consensus 86 ~l~~~~~~~~~----~~~~~~~~Ie~~~~~~i-----RG--rt~~-~~~iIvDEaQN~----t~~~~k~ilTR~g~~ski 149 (205)
T PF02562_consen 86 ALEELFGKEKL----EELIQNGKIEIEPLAFI-----RG--RTFD-NAFIIVDEAQNL----TPEELKMILTRIGEGSKI 149 (205)
T ss_dssp HHTTTS-TTCH----HHHHHTTSEEEEEGGGG-----TT----B--SEEEEE-SGGG------HHHHHHHHTTB-TT-EE
T ss_pred HHHHHhChHhH----HHHhhcCeEEEEehhhh-----cC--cccc-ceEEEEecccCC----CHHHHHHHHcccCCCcEE
Confidence 00000011111 11112345666664433 11 2333 379999999976 345677788888887766
Q ss_pred EEEee
Q 015759 156 YLFSA 160 (401)
Q Consensus 156 i~~SA 160 (401)
+++.-
T Consensus 150 i~~GD 154 (205)
T PF02562_consen 150 IITGD 154 (205)
T ss_dssp EEEE-
T ss_pred EEecC
Confidence 65543
No 184
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.08 E-value=2.1e-05 Score=65.78 Aligned_cols=46 Identities=24% Similarity=0.221 Sum_probs=32.2
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 65 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 65 (401)
-+++.||.|+|||++ +..+...+.. .+.++++++||...+..+.+.
T Consensus 20 ~~~l~G~aGtGKT~~-l~~~~~~~~~--------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTL-LKALAEALEA--------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp EEEEEESTTSTHHHH-HHHHHHHHHH--------TT--EEEEESSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHH-HHHHHHHHHh--------CCCeEEEECCcHHHHHHHHHh
Confidence 477889999999975 3334443333 567899999999987776665
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.06 E-value=1.6e-05 Score=75.08 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=48.3
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+.++..--||+||+|+|||.+..--+++. .+. ....+|+++|+..-+.|+++.+.+-+ +++.-+..
T Consensus 421 ~VL~rplsLIQGPPGTGKTvtsa~IVyhl-~~~-------~~~~VLvcApSNiAVDqLaeKIh~tg----LKVvRl~a 486 (935)
T KOG1802|consen 421 HVLQRPLSLIQGPPGTGKTVTSATIVYHL-ARQ-------HAGPVLVCAPSNIAVDQLAEKIHKTG----LKVVRLCA 486 (935)
T ss_pred HHHcCCceeeecCCCCCceehhHHHHHHH-HHh-------cCCceEEEcccchhHHHHHHHHHhcC----ceEeeeeh
Confidence 45666778999999999998754433333 222 56679999999999999999998754 55555544
No 186
>PRK10536 hypothetical protein; Provisional
Probab=98.04 E-value=8.2e-06 Score=69.74 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=68.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHH-------HHHHHHHhccCCCc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ-------ISEQFEALGSGISL 75 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-------~~~~l~~~~~~~~i 75 (401)
+.++.++..+++.||+|+|||+..+...++.+... ...+++|.-|+.+..+. ..+.+.-|...+--
T Consensus 68 l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-------~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D 140 (262)
T PRK10536 68 LKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-------DVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYD 140 (262)
T ss_pred HHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-------CeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHH
Confidence 34566778899999999999998766666555432 34556666666542211 11111111110000
Q ss_pred eEEEEEcCCChHHHHHHh-CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCce
Q 015759 76 RCAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQ 154 (401)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 154 (401)
....+.+... ....+ .....|-|..... +.. . .+ .-++||+||++.+. ...+..++..++...+
T Consensus 141 ~L~~~~~~~~---~~~~~~~~~~~Iei~~l~y----mRG-r--tl-~~~~vIvDEaqn~~----~~~~k~~ltR~g~~sk 205 (262)
T PRK10536 141 VLVRRLGASF---MQYCLRPEIGKVEIAPFAY----MRG-R--TF-ENAVVILDEAQNVT----AAQMKMFLTRLGENVT 205 (262)
T ss_pred HHHHHhChHH---HHHHHHhccCcEEEecHHH----hcC-C--cc-cCCEEEEechhcCC----HHHHHHHHhhcCCCCE
Confidence 0000011100 01011 1123455555322 222 2 23 24799999999763 3577788888887775
Q ss_pred EEE
Q 015759 155 TYL 157 (401)
Q Consensus 155 ~i~ 157 (401)
+++
T Consensus 206 ~v~ 208 (262)
T PRK10536 206 VIV 208 (262)
T ss_pred EEE
Confidence 554
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.03 E-value=1.9e-05 Score=74.09 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=39.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~ 67 (401)
.-.++.||+|+|||.+... ++..+.. .+.++|+++||..-+..+.+++.
T Consensus 202 ~l~~I~GPPGTGKT~TlvE-iI~qlvk--------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVE-IISQLVK--------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CceEeeCCCCCCceeeHHH-HHHHHHH--------cCCeEEEEcCchHHHHHHHHHhc
Confidence 4478899999999998655 4444443 77899999999999999998754
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.00 E-value=2.4e-05 Score=65.64 Aligned_cols=120 Identities=21% Similarity=0.247 Sum_probs=74.0
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc-cCCCceEE--EEEcC
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG-SGISLRCA--VLVGG 83 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~-~~~~i~~~--~~~~~ 83 (401)
.+|+|.+.+.-+|.|||.+ ++|++..++.+ ...-+.+++| ++|..|....+.... .-++-++. .+...
T Consensus 39 ~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd-------g~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~ 109 (229)
T PF12340_consen 39 PSGKNSVMQLNMGEGKTSV-IVPMLALALAD-------GSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRS 109 (229)
T ss_pred CCCCCeEeeecccCCccch-HHHHHHHHHcC-------CCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCC
Confidence 4689999999999999987 67788877764 3455777888 679999998887643 22333333 33333
Q ss_pred CChHH----HH----HHhCCCCCEEEECchHHHHHHhcC-------CC----------CCCCCccEEEEcchhhccc
Q 015759 84 VDMMQ----QT----LALGKRPHIVVATPGRLMDHLTNT-------KG----------FSLGTLKYLVLDEADRLLN 135 (401)
Q Consensus 84 ~~~~~----~~----~~~~~~~~Iii~T~~~l~~~~~~~-------~~----------~~~~~~~~iIiDE~h~~~~ 135 (401)
..... .. ........|+++||+.++...... .. -.+.....=|+||+|..++
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 110 TPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 22211 11 112235679999999875543221 10 0123344568899886554
No 189
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.99 E-value=6.6e-05 Score=58.90 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCC------ceEeecCCCCHHHHHHHHhhccCCC-ceEEEEcCCCCCCCCCCC--CCEEEEecCCCC-h-
Q 015759 230 TRLLALMLRNLGQ------RAIPISGHMSQSKRLGALNKFKAGE-CNILICTDVASRGLDIPS--VDMVINYDIPTN-S- 298 (401)
Q Consensus 230 ~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~~~-~~vLv~T~~~~~Gid~~~--~~~vi~~~~p~s-~- 298 (401)
.+.++..+.+.+. .-.++..+.+..+...+++.|.... ..||+++.-+++|+|+|+ ++.||....|.. +
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3445555555443 2233444455556788889998754 379999988999999998 678888887742 1
Q ss_pred -----------------------------hHHHHHhhhcccCCCCceEEEEecc
Q 015759 299 -----------------------------KDYIHRVGRTARAGRTGVAISLVNQ 323 (401)
Q Consensus 299 -----------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~ 323 (401)
..+.|.+||+-|..++--++++++.
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 1235889999998766445555544
No 190
>PRK04296 thymidine kinase; Provisional
Probab=97.97 E-value=3.9e-05 Score=63.88 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=25.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 54 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 54 (401)
|.-.++.||+|+|||+.++- ++.++.. .+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~-~~~~~~~--------~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQ-RAYNYEE--------RGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHH-HHHHHHH--------cCCeEEEEec
Confidence 45578899999999976443 3333332 5667888866
No 191
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.95 E-value=5.6e-05 Score=59.42 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCC---ceEeecCCCCHHHHHHHHhhccCCCc---eEEEEcCC--CCCCCCCCC--CCEEEEecCCCC-
Q 015759 229 ATRLLALMLRNLGQ---RAIPISGHMSQSKRLGALNKFKAGEC---NILICTDV--ASRGLDIPS--VDMVINYDIPTN- 297 (401)
Q Consensus 229 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~---~vLv~T~~--~~~Gid~~~--~~~vi~~~~p~s- 297 (401)
..+.+++.+++.+. ...++..+....+...+++.|.+... .||+++.- +++|+|+|+ ++.||....|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34556666665543 12223323333344678888887543 68888876 999999998 678888888742
Q ss_pred ---h---------------------------hHHHHHhhhcccCCCCceEEEEecc
Q 015759 298 ---S---------------------------KDYIHRVGRTARAGRTGVAISLVNQ 323 (401)
Q Consensus 298 ---~---------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~ 323 (401)
+ ..+.|.+||+-|..++--++++++.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 1 1235899999998766555666654
No 192
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00015 Score=68.01 Aligned_cols=142 Identities=21% Similarity=0.149 Sum_probs=71.7
Q ss_pred EEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc-cCCCceEEEEEcCCChH----H
Q 015759 14 GLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG-SGISLRCAVLVGGVDMM----Q 88 (401)
Q Consensus 14 i~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~-~~~~i~~~~~~~~~~~~----~ 88 (401)
..+.||||||+++...++...-. .....|+.|.....++.....+..-. ..+-..-.+..++.... .
T Consensus 2 f~matgsgkt~~ma~lil~~y~k--------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK--------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh--------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeec
Confidence 45789999999866555543332 44557777777666665544332110 00000000001111000 0
Q ss_pred HHHHhCCCCCEEEECchHHHHHHhcCCC--C---CCCCccEEEE-cchhhccccc-------------cHHHHHHHHHhC
Q 015759 89 QTLALGKRPHIVVATPGRLMDHLTNTKG--F---SLGTLKYLVL-DEADRLLNDD-------------FEKSLDEILNVI 149 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~--~---~~~~~~~iIi-DE~h~~~~~~-------------~~~~~~~i~~~~ 149 (401)
......+...|+++|.+.|...+.+.+. . ++.+..+|.+ ||+|++-... |...+...+..
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~- 152 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ- 152 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-
Confidence 0001223567999999998776655332 1 3444555544 9999875421 22222211221
Q ss_pred CCCceEEEEeecCch
Q 015759 150 PRMRQTYLFSATMTK 164 (401)
Q Consensus 150 ~~~~~~i~~SAT~~~ 164 (401)
.+..-++.+|||.+.
T Consensus 153 nkd~~~lef~at~~k 167 (812)
T COG3421 153 NKDNLLLEFSATIPK 167 (812)
T ss_pred CCCceeehhhhcCCc
Confidence 223347889999884
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.0003 Score=64.79 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=68.8
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEE-cCc-HHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVL-SPT-RELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil-~P~-~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
.++.+++.||||+|||++..-.+......... .+.++.++ +.+ +.-+. +.++.++...++.+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-----~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~------ 238 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDD-----KSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA------ 238 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhcc-----CCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe------
Confidence 35679999999999998865433222211100 23334433 333 22222 2255554444444321
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhCC-CCceEEEEeecCc
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIP-RMRQTYLFSATMT 163 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~ 163 (401)
+-+++.+...+.. +.+.++|++|++.+..... .-..+..++.... +....+.+|||..
T Consensus 239 ---------------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 239 ---------------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred ---------------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 2234444444433 3568899999999765321 2234455555443 3245789999985
Q ss_pred h-HHHHHHHH
Q 015759 164 K-KVKKLQRA 172 (401)
Q Consensus 164 ~-~~~~~~~~ 172 (401)
. .+......
T Consensus 299 ~~~~~~~~~~ 308 (388)
T PRK12723 299 TSDVKEIFHQ 308 (388)
T ss_pred HHHHHHHHHH
Confidence 4 33444443
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.88 E-value=9e-05 Score=57.70 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=24.0
Q ss_pred cEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 123 KYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 123 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
.+||+||+|++.. ...+..+........-.+.+++|+
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 6899999998642 455555555554444456666665
No 195
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.87 E-value=0.00012 Score=71.37 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=77.4
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
.++.++-++|.|++|+|||++. ..++..+....... ...++++++||-.-+..+.+.+......++..
T Consensus 156 ~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~~---~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-------- 223 (586)
T TIGR01447 156 LALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPKQ---GKLRIALAAPTGKAAARLAESLRKAVKNLAAA-------- 223 (586)
T ss_pred HHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhcccc---CCCcEEEECCcHHHHHHHHHHHHhhhcccccc--------
Confidence 3456778999999999999863 33444443321100 12579999999988888877776543222110
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCC-----CCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-----FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-----~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
. .......+-..|..+++........ -....+++|||||+- |.+ ...+..+++.++...++|++.
T Consensus 224 ~------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd---~~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 224 E------ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVD---LPLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred h------hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCC---HHHHHHHHHhcCCCCEEEEEC
Confidence 0 0000111224454444432211100 123357899999999 444 346777788888888777665
Q ss_pred ec
Q 015759 160 AT 161 (401)
Q Consensus 160 AT 161 (401)
=.
T Consensus 294 D~ 295 (586)
T TIGR01447 294 DK 295 (586)
T ss_pred Ch
Confidence 44
No 196
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00018 Score=65.74 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=68.6
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|+.+++.||||+|||++....+...+... ...++.+++. ...-.--.+.++.++...++.+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~-------G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~------- 198 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRF-------GASKVALLTT-DSYRIGGHEQLRIFGKILGVPVH------- 198 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEec-ccccccHHHHHHHHHHHcCCceE-------
Confidence 45688999999999999987554333322221 1134444432 22211123444444433334332
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
.+.+++.+...+.. +.+.++|+||.+-+... ......+..+.........++.+|||...
T Consensus 199 --------------~~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 199 --------------AVKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred --------------ecCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 23344444333332 34568999999974422 22233333333323333457889999854
Q ss_pred HH-HHHHHHh
Q 015759 165 KV-KKLQRAC 173 (401)
Q Consensus 165 ~~-~~~~~~~ 173 (401)
.. .+....+
T Consensus 260 ~~l~evi~~f 269 (374)
T PRK14722 260 DTLNEVVQAY 269 (374)
T ss_pred HHHHHHHHHH
Confidence 43 3344443
No 197
>PRK06526 transposase; Provisional
Probab=97.81 E-value=0.0001 Score=64.07 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.4
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
..+..++++++.||+|+|||..+..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH
Confidence 3456789999999999999986544
No 198
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.80 E-value=0.00015 Score=71.62 Aligned_cols=53 Identities=15% Similarity=0.230 Sum_probs=40.9
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
....++|.||+|+|||.+..- ++..+.. .+.++|+++||..-+.++.+.+...
T Consensus 172 ~~~~~lI~GpPGTGKT~t~~~-ii~~~~~--------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 172 SKDLFLIHGPPGTGKTRTLVE-LIRQLVK--------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCeEEEEcCCCCCHHHHHHH-HHHHHHH--------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 336789999999999987544 3434333 4568999999999999999988763
No 199
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.77 E-value=9.3e-05 Score=74.99 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=99.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHH---------hhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCce
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEI---------AENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLR 76 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~---------~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~ 76 (401)
...|++++..-..|.|||..-+...+...-.. .........+.+||+||. ++..||.+++.+.... +++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~-~lK 448 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS-LLK 448 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc-cce
Confidence 34678889999999999988654433321110 011122245568999996 5779999999987654 378
Q ss_pred EEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC-------------CCC------CCccEEEEcchhhccccc
Q 015759 77 CAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-------------FSL------GTLKYLVLDEADRLLNDD 137 (401)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-------------~~~------~~~~~iIiDE~h~~~~~~ 137 (401)
+..+.|-.+.......-...+|||++|++.|.+-+..... ... -.+=.|++|||+. +..
T Consensus 449 v~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQM-ves- 526 (1394)
T KOG0298|consen 449 VLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQM-VES- 526 (1394)
T ss_pred EEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHh-hcc-
Confidence 8877774332111111123699999999999775543311 001 1123589999994 443
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCchHHHHHHH
Q 015759 138 FEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQR 171 (401)
Q Consensus 138 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 171 (401)
-.....++...++... .-.+|+||...+..+..
T Consensus 527 ssS~~a~M~~rL~~in-~W~VTGTPiq~Iddl~~ 559 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHAIN-RWCVTGTPIQKIDDLFP 559 (1394)
T ss_pred hHHHHHHHHHHhhhhc-eeeecCCchhhhhhhHH
Confidence 3445566666665433 56889998766555433
No 200
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00056 Score=62.28 Aligned_cols=130 Identities=17% Similarity=0.202 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC-c-H-HHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP-T-R-ELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P-~-~-~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
+++.+.+.||||+|||++....+. .+.. .+.++.++.. + | ..++|+...... .++.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~-~L~~--------~GkkVglI~aDt~RiaAvEQLk~yae~----lgipv------- 299 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW-QFHG--------KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEV------- 299 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH-HHHH--------cCCcEEEEecCCcchHHHHHHHHHhhh----cCCcE-------
Confidence 346789999999999987554332 2221 4444554443 2 2 344554443332 22222
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
++..+|..+.+.+.... ...++++|+||-+-+... ...-..+..++....+..-++.+|||..
T Consensus 300 --------------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk 363 (436)
T PRK11889 300 --------------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 363 (436)
T ss_pred --------------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC
Confidence 22346666666554422 112578999998876543 2223334444444434444667888765
Q ss_pred -hHHHHHHHHh
Q 015759 164 -KKVKKLQRAC 173 (401)
Q Consensus 164 -~~~~~~~~~~ 173 (401)
..+......+
T Consensus 364 ~~d~~~i~~~F 374 (436)
T PRK11889 364 SKDMIEIITNF 374 (436)
T ss_pred hHHHHHHHHHh
Confidence 4445555544
No 201
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.75 E-value=0.00034 Score=63.52 Aligned_cols=132 Identities=19% Similarity=0.246 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
+++.+.+.||||.|||++..-.+....+... ..+..+|-+-|--. --.+.|+.++.-+++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~------~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~---------- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK------KKKVAIITTDTYRI--GAVEQLKTYADIMGVPL---------- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc------CcceEEEEeccchh--hHHHHHHHHHHHhCCce----------
Confidence 4888999999999999986554444432221 23334444443211 12344444444334433
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhc-cccccHHHHHHHHHhCCCCceEEEEeecCc-hH
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDDFEKSLDEILNVIPRMRQTYLFSATMT-KK 165 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~ 165 (401)
.++-+|.-|...+.. +.+.++|.+|=+-+- .+......+..+.+.-.+..-.+.+|||.. .+
T Consensus 264 -----------~vv~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 264 -----------EVVYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred -----------EEecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 455566666665543 556789999977643 333344556666655555556788999975 44
Q ss_pred HHHHHHHh
Q 015759 166 VKKLQRAC 173 (401)
Q Consensus 166 ~~~~~~~~ 173 (401)
+.+....+
T Consensus 328 lkei~~~f 335 (407)
T COG1419 328 LKEIIKQF 335 (407)
T ss_pred HHHHHHHh
Confidence 55555544
No 202
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.74 E-value=0.00021 Score=69.93 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=76.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
.+.++-++|.|++|+|||++.. .++..+..... ....++++++||..-+..+.+.+.......++. .
T Consensus 164 a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~----~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-----~--- 230 (615)
T PRK10875 164 ALTRRISVISGGPGTGKTTTVA-KLLAALIQLAD----GERCRIRLAAPTGKAAARLTESLGKALRQLPLT-----D--- 230 (615)
T ss_pred HhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcC----CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc-----h---
Confidence 3456679999999999998632 24444433110 034578999999998888888776543322211 0
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCC-----CCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKG-----FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-----~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
... .....-..|..+++........ ...-.+++|||||+- |.+ ...+..++..+++..++|++.=
T Consensus 231 ---~~~---~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd---~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 231 ---EQK---KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVD---LPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred ---hhh---hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-ccc---HHHHHHHHHhcccCCEEEEecc
Confidence 000 0011123344444332111110 122346899999999 444 4566778888888887777655
Q ss_pred c
Q 015759 161 T 161 (401)
Q Consensus 161 T 161 (401)
.
T Consensus 301 ~ 301 (615)
T PRK10875 301 R 301 (615)
T ss_pred h
Confidence 4
No 203
>PRK08181 transposase; Validated
Probab=97.69 E-value=0.00026 Score=61.97 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=60.5
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..++++++.||+|+|||..+.. +...+.. .+..+++ ++..+|+.++......
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~--------~g~~v~f-~~~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAA-IGLALIE--------NGWRVLF-TRTTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHH-HHHHHHH--------cCCceee-eeHHHHHHHHHHHHhC-----------------
Confidence 34788999999999999975443 3333332 3444544 4455666655432110
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
.+.+.+++. +...+++|+||.+...... ....+..+++..-....+++.|-.++.
T Consensus 156 ----------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 156 ----------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred ----------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 012222221 3357799999999654432 233555555543333446555555554
Q ss_pred HH
Q 015759 165 KV 166 (401)
Q Consensus 165 ~~ 166 (401)
..
T Consensus 212 ~w 213 (269)
T PRK08181 212 EW 213 (269)
T ss_pred HH
Confidence 43
No 204
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.68 E-value=0.00011 Score=63.74 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=59.0
Q ss_pred HHHhhccCCCceEEEEcCCCCCCCCCCC--------CCEEEEecCCCChhHHHHHhhhcccCCCC-ceEEEEeccc---c
Q 015759 258 GALNKFKAGECNILICTDVASRGLDIPS--------VDMVINYDIPTNSKDYIHRVGRTARAGRT-GVAISLVNQY---E 325 (401)
Q Consensus 258 ~~~~~f~~~~~~vLv~T~~~~~Gid~~~--------~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~-g~~i~~~~~~---~ 325 (401)
...++|.+|+.+|+|-+++++.|+.+.. -++-|.+.+|||.+..+|..||++|.|+. .-.|.++..+ |
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4567999999999999999999999863 23667899999999999999999999974 3334443322 4
Q ss_pred HHHHHHHHHHh
Q 015759 326 LEWYLQIEKLI 336 (401)
Q Consensus 326 ~~~~~~~~~~~ 336 (401)
......+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.66 E-value=0.00029 Score=58.82 Aligned_cols=124 Identities=21% Similarity=0.238 Sum_probs=65.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCc--H-HHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT--R-ELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~--~-~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
-++++||||+|||.+..-.+..... .+.++.+++-. | .-.+|+....+.+ ++.+........
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~---------~~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~~-- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKL---------KGKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTESD-- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH---------TT--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTSC--
T ss_pred EEEEECCCCCchHhHHHHHHHHHhh---------ccccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcchh--
Confidence 4788999999999985543333222 23344444432 2 3334444333333 444433211111
Q ss_pred HHHHHhCCCCCEEEECchHH-HHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 88 QQTLALGKRPHIVVATPGRL-MDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l-~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
|..+ .+.+.. +..+++++|+||-+.+... ......+..+.....+..-.+.+|||...+
T Consensus 68 ----------------~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 68 ----------------PAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp ----------------HHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred ----------------hHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 1111 122222 1234578999999875543 344566777777776666688999998665
Q ss_pred HHH
Q 015759 166 VKK 168 (401)
Q Consensus 166 ~~~ 168 (401)
...
T Consensus 129 ~~~ 131 (196)
T PF00448_consen 129 DLE 131 (196)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 206
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.63 E-value=0.00037 Score=64.37 Aligned_cols=59 Identities=19% Similarity=0.051 Sum_probs=42.5
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
.+..+-++++.+|+|+|||.+.+..++...++.++ ...+.++.+-|..=++....+++.
T Consensus 31 sLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~-----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 31 SLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred hhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-----ccceEEEecCcchHHHHHHHHHHH
Confidence 45678889999999999999877767776666543 445677777776655555555554
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.60 E-value=0.0016 Score=58.83 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=73.5
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCc---HHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT---RELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~---~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+.-+++.|++|+|||++... +...+.. .+.+++++... ..-.+|+......+ ++.+.....+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiak-LA~~l~~--------~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK-LAYYLKK--------NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGA- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHH--------cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCC-
Confidence 34588899999999986443 2233322 44556666543 34456665555543 33332211110
Q ss_pred hHHHHHHhCCCCCEEEECchH-HHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 86 MMQQTLALGKRPHIVVATPGR-LMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~-l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
.|.. +.+.+... .....++|++|.++++.. ..+...+..+.....+...++.++||..
T Consensus 206 -----------------dp~~v~~~ai~~~---~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 -----------------DPAAVAYDAIEHA---KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred -----------------CHHHHHHHHHHHH---HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 1111 11212211 123567999999997753 4555667777777766677888899876
Q ss_pred hHHHHHHHHh
Q 015759 164 KKVKKLQRAC 173 (401)
Q Consensus 164 ~~~~~~~~~~ 173 (401)
.+.......+
T Consensus 266 ~d~~~~a~~f 275 (336)
T PRK14974 266 NDAVEQAREF 275 (336)
T ss_pred hhHHHHHHHH
Confidence 6555444443
No 208
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.54 E-value=0.00044 Score=69.50 Aligned_cols=114 Identities=21% Similarity=0.178 Sum_probs=64.0
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..++-+++.|++|+|||.+. -.++..+.... ....+++++||-.-+..+.+.. +...
T Consensus 335 ~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~------~~~~v~l~ApTg~AA~~L~e~~-------g~~a-------- 392 (720)
T TIGR01448 335 AIQHKVVILTGGPGTGKTTIT-RAIIELAEELG------GLLPVGLAAPTGRAAKRLGEVT-------GLTA-------- 392 (720)
T ss_pred HHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC------CCceEEEEeCchHHHHHHHHhc-------CCcc--------
Confidence 345678999999999999753 33333332210 1156889999988776544332 1111
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcC----CCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
.|..+++...... ..-.....++||+||++.+ + ...+..++..++...+++++.=+
T Consensus 393 ----------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMv-d---~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 393 ----------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMM-D---TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ----------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccC-C---HHHHHHHHHhCCCCCEEEEECcc
Confidence 1111111110000 0001235789999999954 4 23556677778877777766544
No 209
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.54 E-value=0.0021 Score=60.35 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=68.0
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..|+.+++.||||+|||++....+....... .+.++.++.-...- .-..+.+..++...++.+.
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r-~~a~eqL~~~a~~~~vp~~-------- 282 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYR-IGAVEQLKTYAKIMGIPVE-------- 282 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccH-HHHHHHHHHHHHHhCCceE--------
Confidence 4577899999999999987554333222111 33445444432110 0012333333322233221
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHH-hCCCCceEEEEeecCch
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILN-VIPRMRQTYLFSATMTK 164 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~-~~~~~~~~i~~SAT~~~ 164 (401)
.+.+++.+...+.. +...++|+||.+-+... ......+..++. ...+....+.+|||...
T Consensus 283 -------------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 283 -------------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred -------------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 22344445444443 33578999999875322 222344555555 22233457889998764
Q ss_pred -HHHHHHHHh
Q 015759 165 -KVKKLQRAC 173 (401)
Q Consensus 165 -~~~~~~~~~ 173 (401)
.+......+
T Consensus 345 ~~l~~~~~~f 354 (424)
T PRK05703 345 EDLKDIYKHF 354 (424)
T ss_pred HHHHHHHHHh
Confidence 444444443
No 210
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.48 E-value=0.00074 Score=53.41 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=15.5
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 78899999999999974
No 211
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.46 E-value=0.00048 Score=59.68 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 117 FSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 117 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
...+.+.++|+||||.|....| ..+.+.+...++...+++++.-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq-~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQ-AALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHHHH-HHHHHHHhccccceEEEEEcCCh
Confidence 3566789999999998766443 45555566666665566655543
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.0005 Score=53.96 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=25.7
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
+..+++.||+|+|||..... +...+.. ....++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~--------~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGP--------PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCC--------CCCCEEEECCEEcc
Confidence 67899999999999985322 2222211 11247777776644
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.40 E-value=0.001 Score=56.72 Aligned_cols=107 Identities=19% Similarity=0.193 Sum_probs=62.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
.+++.||+|+|||.. +..+...+.... ++.+++++.. .+........++.-
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~------~~~~v~y~~~-~~f~~~~~~~~~~~--------------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH------PGKRVVYLSA-EEFIREFADALRDG--------------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC------TTS-EEEEEH-HHHHHHHHHHHHTT---------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc------ccccceeecH-HHHHHHHHHHHHcc---------------------
Confidence 489999999999984 444444444332 4556776654 45555555555431
Q ss_pred HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhcccc-ccHHHHHHHHHhCC-CCceEEEEeecCchHH
Q 015759 91 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND-DFEKSLDEILNVIP-RMRQTYLFSATMTKKV 166 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 166 (401)
..+.+.+ .+...+++++|++|.+... .+...+..+++.+. ...++++.|...|..+
T Consensus 87 ------------~~~~~~~--------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 87 ------------EIEEFKD--------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ------------SHHHHHH--------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ------------cchhhhh--------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 1122222 2346789999999987663 34455555555543 3446666665666543
No 214
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.36 E-value=0.0028 Score=52.68 Aligned_cols=50 Identities=20% Similarity=0.136 Sum_probs=34.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
.+++.||+|+|||...+-.+...+ . .+..++|++.. +-..++.+.+..++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~--------~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-A--------RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-H--------CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 368999999999986544333333 2 55668888664 55677777777664
No 215
>PRK05642 DNA replication initiation factor; Validated
Probab=97.26 E-value=0.0022 Score=55.32 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=27.9
Q ss_pred CccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 121 TLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
..+++|+|++|.+.. ..+...+..+++.+......+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 457899999997644 34455566777665443335666666544
No 216
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.26 E-value=0.0069 Score=48.83 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=23.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
+++.||+|+|||..... +...+.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~--------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIAT--------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHh--------cCCEEEEEECCcch
Confidence 67899999999985433 3332222 35557777665444
No 217
>PRK09183 transposase/IS protein; Provisional
Probab=97.25 E-value=0.0041 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.1
Q ss_pred cccCCccEEEEcCCCcHHHHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
.+.+|.++++.||+|+|||..+..
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHH
Confidence 367889999999999999986544
No 218
>PRK12377 putative replication protein; Provisional
Probab=97.21 E-value=0.0026 Score=55.05 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=29.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 65 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 65 (401)
..++++.||+|+|||..+. .+...+.. .+..+ +.++..+|..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~--------~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLA--------KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH--------cCCCe-EEEEHHHHHHHHHHH
Confidence 4689999999999997543 34444443 34444 444555666665444
No 219
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.21 E-value=0.011 Score=51.74 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=69.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC-cH--HHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP-TR--ELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P-~~--~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
++..+.+.+|+|+|||..+...+. .+.. .+..+.++.. +. ..+.||....... ++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~-~l~~--------~~~~v~~i~~D~~ri~~~~ql~~~~~~~----~~~~~------ 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW-QFHG--------KKKTVGFITTDHSRIGTVQQLQDYVKTI----GFEVI------ 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH-HHHH--------cCCeEEEEecCCCCHHHHHHHHHHhhhc----CceEE------
Confidence 447899999999999986554322 2221 2333444433 22 4556665444332 22221
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
...+++.+.+.+.... ....+++|++|-+-+... ...-..+..++....+..-.+.+|||..
T Consensus 135 ---------------~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 135 ---------------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred ---------------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 1124555544443211 123578999999876532 2333444455554444444677999865
Q ss_pred -hHHHHHHHHh
Q 015759 164 -KKVKKLQRAC 173 (401)
Q Consensus 164 -~~~~~~~~~~ 173 (401)
.+.......+
T Consensus 198 ~~d~~~~~~~f 208 (270)
T PRK06731 198 SKDMIEIITNF 208 (270)
T ss_pred HHHHHHHHHHh
Confidence 4555555554
No 220
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.20 E-value=0.0021 Score=55.50 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.++++.||+|+|||...
T Consensus 44 ~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4468999999999999753
No 221
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.19 E-value=0.0015 Score=58.17 Aligned_cols=43 Identities=23% Similarity=0.075 Sum_probs=34.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 60 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 60 (401)
|.+.|+.|||||+.++.+.+.+.+..+ ...++++.=|+..+.+
T Consensus 248 V~L~G~AGtGKTlLALaAgleqv~e~~------~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 248 VSLGGKAGTGKTLLALAAGLEQVLERK------RYRKIIVTRPTVPVGE 290 (436)
T ss_pred EEeeccCCccHhHHHHHHHHHHHHHHh------hhceEEEecCCcCccc
Confidence 677899999999999988888888766 5667788777766543
No 222
>PRK08727 hypothetical protein; Validated
Probab=97.18 E-value=0.0026 Score=54.91 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=24.8
Q ss_pred CccEEEEcchhhcccc-ccHHHHHHHHHhCC-CCceEEEEeecCchHH
Q 015759 121 TLKYLVLDEADRLLND-DFEKSLDEILNVIP-RMRQTYLFSATMTKKV 166 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 166 (401)
+.++||+||+|.+... .+...+..+++.+. +..++++.|-.++...
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 4578999999977542 23334444444432 2233544444445444
No 223
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.002 Score=58.19 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=29.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
.+.|++||+|+|||..+-+ +... .+..+.-+..+.+=+.++.+.+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l------iA~~------~~~~f~~~sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL------IAGT------TNAAFEALSAVTSGVKDLREIIEE 95 (436)
T ss_pred ceeEEECCCCCCHHHHHHH------HHHh------hCCceEEeccccccHHHHHHHHHH
Confidence 6899999999999975432 2111 333455666666555555555544
No 224
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.16 E-value=0.0026 Score=54.70 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.3
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.++++.||+|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999754
No 225
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.16 E-value=0.006 Score=58.29 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=29.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 66 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l 66 (401)
..+++.||+|+|||... ..+...+.... .+.+++++ +...+..++...+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~------~~~~v~yi-~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN------PNAKVVYV-TSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC------CCCeEEEE-EHHHHHHHHHHHH
Confidence 46999999999999753 33444443321 34556666 4455555544444
No 226
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.15 E-value=0.00015 Score=58.64 Aligned_cols=124 Identities=21% Similarity=0.195 Sum_probs=53.6
Q ss_pred EEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHH
Q 015759 13 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLA 92 (401)
Q Consensus 13 ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 92 (401)
++.|+-|-|||.+.-+.+.. +... ...+++|.+|+.+=++.+.+.+..-....+.+....... ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS------------EEEE-SS--S-HHHHHCC--------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHHh-------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---cccccc
Confidence 57899999999875543332 2221 235799999999887877776655433333222000000 000000
Q ss_pred hCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 93 LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 93 ~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
......|-+..|+.+.. .....+++|||||=.+ --+.+..++...+ .++||.|..
T Consensus 70 ~~~~~~i~f~~Pd~l~~--------~~~~~DlliVDEAAaI----p~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELLA--------EKPQADLLIVDEAAAI----PLPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp ---CCC--B--HHHHCC--------T----SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred ccccceEEEECCHHHHh--------CcCCCCEEEEechhcC----CHHHHHHHHhhCC----EEEEEeecc
Confidence 11245677777776522 1224589999999955 3445666654433 568888874
No 227
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0087 Score=48.73 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=64.1
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
|+=.++.||+.||||...+. .+.+... .+.++++..|...- .+ +.....-+.|.+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~----r~~~~~~-----~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~--- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLR----RARRYKE-----AGMKVLVFKPAIDT---------RY----GVGKVSSRIGLS--- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHH----HHHHHHH-----cCCeEEEEeccccc---------cc----ccceeeeccCCc---
Confidence 44568899999999986433 2222222 67789999985431 01 111111111111
Q ss_pred HHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC
Q 015759 89 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 150 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 150 (401)
...++|-.+..+.+.+..... ....++|.|||++ +++...-..+..+.+.+.
T Consensus 59 -------~~A~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQ-F~~~~~v~~l~~lad~lg 110 (201)
T COG1435 59 -------SEAVVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQ-FFDEELVYVLNELADRLG 110 (201)
T ss_pred -------ccceecCChHHHHHHHHhccc--CCCcCEEEEehhH-hCCHHHHHHHHHHHhhcC
Confidence 134666677777777776442 2237899999999 666666666777776654
No 228
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.12 E-value=0.00091 Score=60.66 Aligned_cols=113 Identities=24% Similarity=0.207 Sum_probs=65.6
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
...+++|.|.+|||||.+.+.-+...+.... ....++|++++|+..+.++.+++.......... .....
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~------~~~~~ 80 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-----VPPERILVLTFTNAAAQEMRERIRELLEEEQQE------SSDNE 80 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC------CTT-H
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-----CChHHheecccCHHHHHHHHHHHHHhcCccccc------ccccc
Confidence 4688999999999999986554444443321 255669999999999999999998854321100 00000
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCC-CCccEEEEcchh
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSL-GTLKYLVLDEAD 131 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~-~~~~~iIiDE~h 131 (401)
...........+.|+|.+.+...+........ -.-.+-++|+..
T Consensus 81 ~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 81 RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 11111112356889999888665543211111 122456777766
No 229
>PRK06893 DNA replication initiation factor; Validated
Probab=97.11 E-value=0.003 Score=54.36 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=27.9
Q ss_pred CCccEEEEcchhhccc-cccHHHHHHHHHhCCC-CceEEEEeecCch
Q 015759 120 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIPR-MRQTYLFSATMTK 164 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 164 (401)
.+.+++++||+|.+.. ..+...+..+++.+.. ..+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 3567999999997753 3344455555554432 3346677777644
No 230
>PRK06921 hypothetical protein; Provisional
Probab=97.11 E-value=0.0023 Score=56.21 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=28.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 62 (401)
.+.++++.||+|+|||..+ ..+...+... .+..++++. ..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~-------~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK-------KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh-------cCceEEEEE-HHHHHHHH
Confidence 4688999999999999753 3344444431 145566654 34554443
No 231
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.10 E-value=0.0059 Score=57.97 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=59.4
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
..+++.|++|+|||... ..+...+.... ++.+++++.+ ..+..++...+....
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~------~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF------SDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC------CCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 45899999999999743 33444333222 4566777655 556666655554210
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCC-CCceEEEEeecCchHH
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIP-RMRQTYLFSATMTKKV 166 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 166 (401)
...+.+.. .+.+.+++|+||+|.+.. ......+..+++.+. ...|+++.|-.+|..+
T Consensus 195 ------------~~~~~~~~--------~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ------------KEIEQFKN--------EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ------------hHHHHHHH--------HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 00111111 134577999999997654 223344555554433 3335555444444433
No 232
>PRK08116 hypothetical protein; Validated
Probab=97.10 E-value=0.0048 Score=54.34 Aligned_cols=47 Identities=23% Similarity=0.180 Sum_probs=28.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 65 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 65 (401)
+..+++.|++|+|||..+. ++...+.. .+..+++ .+..++..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~--------~~~~v~~-~~~~~ll~~i~~~ 160 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIE--------KGVPVIF-VNFPQLLNRIKST 160 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHH--------cCCeEEE-EEHHHHHHHHHHH
Confidence 3459999999999998643 35555543 2334444 4445555544433
No 233
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.08 E-value=0.0092 Score=51.54 Aligned_cols=109 Identities=18% Similarity=0.309 Sum_probs=58.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
..+++.|++|+|||..+. .+...+.. .+..++++ +...|...+...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~--------~g~~v~~i-t~~~l~~~l~~~~~~--------------------- 148 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL--------RGKSVLII-TVADIMSAMKDTFSN--------------------- 148 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh--------cCCeEEEE-EHHHHHHHHHHHHhh---------------------
Confidence 579999999999997643 34444443 34455555 434443333322210
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHH-HHHHHHHhC-CCCceEEEEeecCchHHH
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEK-SLDEILNVI-PRMRQTYLFSATMTKKVK 167 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~-~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 167 (401)
. -.+.+.+++. +...+++||||++......|.. .+..++... .....+++.|--.+..+.
T Consensus 149 -------~---~~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 149 -------S---ETSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred -------c---cccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0 0112223222 3467899999999765544443 455555543 223446555555444443
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.004 Score=54.26 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=36.0
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
.++.++++.||+|+|||..+.. +...+.. .+.+ ++.+++.+|+.++......
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~A-i~~~l~~--------~g~s-v~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIA-IGNELLK--------AGIS-VLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHH-HHHHHHH--------cCCe-EEEEEHHHHHHHHHHHHhc
Confidence 3789999999999999986443 4444442 3444 4556777887777766653
No 235
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.02 E-value=0.0074 Score=56.87 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=27.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 62 (401)
..+++.||+|+|||... ..+...+.... .+..++++.. ..+..++
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~------~~~~v~yi~~-~~~~~~~ 181 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN------PNAKVVYVSS-EKFTNDF 181 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC------CCCcEEEEEH-HHHHHHH
Confidence 45899999999999853 33444444321 3556777643 3444433
No 236
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.02 E-value=0.01 Score=56.30 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=28.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQ 65 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 65 (401)
..+++.||+|+|||... ..+...+.... ++.+++++.. ..+..+....
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~------~~~~v~yi~~-~~f~~~~~~~ 178 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNE------PDLRVMYITS-EKFLNDLVDS 178 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhC------CCCeEEEEEH-HHHHHHHHHH
Confidence 46999999999999853 33444444321 3456777654 3444444333
No 237
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.01 E-value=0.011 Score=45.73 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.5
Q ss_pred EEEEcCCCcHHHHH
Q 015759 12 LIGLAQTGSGKTGA 25 (401)
Q Consensus 12 ~ii~a~tGsGKT~~ 25 (401)
+++.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999974
No 238
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.01 E-value=2.3e-05 Score=76.01 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=57.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccC---CCceEEEEcCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA---GECNILICTDVASRG 280 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vLv~T~~~~~G 280 (401)
.++++++|.......+.+..++...+ ....+.|..+..+|+..+.+|+. .+...|.+|.+++.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 68899999999999999999998888 88899999999999999999985 345689999998766
No 239
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0074 Score=60.13 Aligned_cols=132 Identities=19% Similarity=0.170 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
.|+-+.+.||||+|||+++...+....... .+.++.++.-...- .-..+.++.++...++.+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-------G~kkV~lit~Dt~R-igA~eQL~~~a~~~gvpv---------- 245 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVARE-------GADQLALLTTDSFR-IGALEQLRIYGRILGVPV---------- 245 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHc-------CCCeEEEecCcccc-hHHHHHHHHHHHhCCCCc----------
Confidence 467789999999999987654332221111 22345444432211 001233344433333322
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCch-H
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK-K 165 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~ 165 (401)
.++.+|+.+.+.+.. +.+.++|+||=+-+... ......+..+.....+...++.+|||... .
T Consensus 246 -----------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~ 309 (767)
T PRK14723 246 -----------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT 309 (767)
T ss_pred -----------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH
Confidence 223366666665553 33567999998875532 22334444444444455568888888743 3
Q ss_pred HHHHHHHh
Q 015759 166 VKKLQRAC 173 (401)
Q Consensus 166 ~~~~~~~~ 173 (401)
+.+....+
T Consensus 310 l~~i~~~f 317 (767)
T PRK14723 310 LNEVVHAY 317 (767)
T ss_pred HHHHHHHH
Confidence 44444444
No 240
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0022 Score=60.40 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.4
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|+.||.|+|||.++.+
T Consensus 41 ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999986544
No 241
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.95 E-value=0.013 Score=50.42 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=35.5
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+..|.-+++.||+|+|||+..+..+.. .+. .+.++++++... -..+..+.+..++
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~-~~~--------~g~~~~yi~~e~-~~~~~~~~~~~~g 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYG-FLQ--------NGYSVSYVSTQL-TTTEFIKQMMSLG 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH-HHh--------CCCcEEEEeCCC-CHHHHHHHHHHhC
Confidence 456888999999999999864332332 322 456678888543 3456666665544
No 242
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.014 Score=53.28 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=63.4
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC-cH--HHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP-TR--ELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P-~~--~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+..++.+++.||+|+|||.+....+. .+.. .+.++.++.- +. .-++||....+. .++.+.
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~-~l~~--------~g~~V~lItaDtyR~gAveQLk~yae~----lgvpv~---- 265 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGW-QLLK--------QNRTVGFITTDTFRSGAVEQFQGYADK----LDVELI---- 265 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHH-HHHH--------cCCeEEEEeCCccCccHHHHHHHHhhc----CCCCEE----
Confidence 34678899999999999987554332 2222 3344544443 32 123455443333 233221
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeec
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
+..+|+.+.+.+.... .....++|+||=+-+... ......+..+.....+..-.+.+|||
T Consensus 266 -----------------~~~dp~dL~~al~~l~--~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag 326 (407)
T PRK12726 266 -----------------VATSPAELEEAVQYMT--YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG 326 (407)
T ss_pred -----------------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc
Confidence 2234555554443321 124578899997765422 23334445555554443335566765
Q ss_pred Cc
Q 015759 162 MT 163 (401)
Q Consensus 162 ~~ 163 (401)
..
T Consensus 327 ~~ 328 (407)
T PRK12726 327 MK 328 (407)
T ss_pred cc
Confidence 54
No 243
>PTZ00293 thymidine kinase; Provisional
Probab=96.89 E-value=0.0096 Score=49.76 Aligned_cols=40 Identities=15% Similarity=0.075 Sum_probs=27.4
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 56 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 56 (401)
.|+--++.||++||||.-.+-. +..... .+.+++++-|..
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~-i~~y~~--------ag~kv~~~kp~~ 42 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRL-VKRFTY--------SEKKCVVIKYSK 42 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHH-HHHHHH--------cCCceEEEEecc
Confidence 4666788999999999764332 222222 567788998865
No 244
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.88 E-value=0.02 Score=53.87 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=31.7
Q ss_pred ccEEEEcchhhcc-ccccHHHHHHHHHhCCCCceEEEEeecCchHHHHHHHH
Q 015759 122 LKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 172 (401)
Q Consensus 122 ~~~iIiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 172 (401)
.++||+|.+-+.. +...-..+..+.....+..-++.++||...+.......
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 3799999996442 23344455666666555556788888876544444443
No 245
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.88 E-value=0.0075 Score=61.07 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=31.9
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 63 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 63 (401)
++-++|.|++|+|||++ +-.+...+.. .+.++++++||-.-+..+.
T Consensus 368 ~~~~il~G~aGTGKTtl-l~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTM-LKAAREAWEA--------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCEEEEEecCCCCHHHH-HHHHHHHHHh--------CCCeEEEEeCcHHHHHHHH
Confidence 45689999999999975 3333333322 5677999999987655554
No 246
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.021 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.5
Q ss_pred cccCCccEEEEcCCCcHHHHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
.+..|+.+.+.||+|+|||.....
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHH
Confidence 345788999999999999987544
No 247
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.83 E-value=0.0094 Score=51.61 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=38.9
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
..|..++|.||+|+|||...+..+...+. .+..+++++- .+-..|+.+.+..++
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~---------~ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 46889999999999999865544444332 4666888875 456678888777765
No 248
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.024 Score=52.86 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=65.6
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|.-+.+.||||+|||++....+-..+.... ...-.++.+.+.-. -..+.+..++...++.+..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~------~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~------ 253 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHG------ADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRS------ 253 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEecCCcch--hHHHHHHHHHHHcCCceec------
Confidence 346778999999999999875432222222211 12234455554222 1223344444333443322
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
+.++..+...+. .+.+.+++++|.+-+.-. ......+..+.....+...++.+|||...
T Consensus 254 ---------------v~~~~dl~~al~-----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~ 313 (420)
T PRK14721 254 ---------------IKDIADLQLMLH-----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG 313 (420)
T ss_pred ---------------CCCHHHHHHHHH-----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH
Confidence 222333332222 245678899998643211 11223344433323344557889999754
Q ss_pred H-HHHHHHH
Q 015759 165 K-VKKLQRA 172 (401)
Q Consensus 165 ~-~~~~~~~ 172 (401)
. +.+....
T Consensus 314 ~~~~~~~~~ 322 (420)
T PRK14721 314 DTLDEVISA 322 (420)
T ss_pred HHHHHHHHH
Confidence 3 4444443
No 249
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.82 E-value=0.009 Score=58.06 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=58.7
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
.+++.|++|+|||... ..+...+.... .+.+++++. ..+++.++...+..-
T Consensus 316 pL~LyG~sGsGKTHLL-~AIa~~a~~~~------~g~~V~Yit-aeef~~el~~al~~~--------------------- 366 (617)
T PRK14086 316 PLFIYGESGLGKTHLL-HAIGHYARRLY------PGTRVRYVS-SEEFTNEFINSIRDG--------------------- 366 (617)
T ss_pred cEEEECCCCCCHHHHH-HHHHHHHHHhC------CCCeEEEee-HHHHHHHHHHHHHhc---------------------
Confidence 4899999999999742 23344333211 345566654 455655554444320
Q ss_pred HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhCCC-CceEEEEeecCchHHH
Q 015759 91 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIPR-MRQTYLFSATMTKKVK 167 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~ 167 (401)
..+.|.+ .+.++++|||||+|.+.... +...+..+++.+.. ..++++.|-..+..+.
T Consensus 367 ------------~~~~f~~--------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 367 ------------KGDSFRR--------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred ------------cHHHHHH--------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 0111211 13457899999999775532 33445555554433 3556655554555443
No 250
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.81 E-value=0.0061 Score=57.31 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=79.7
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH-HHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE-LAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
.++.|..|||||.+....++..++... .+.+++++-|+.. |...+...+......+++....-....+. .
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~---~ 74 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM---E 74 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc---E
Confidence 578899999999998887777777642 3567888888876 55556666665544434332111111110 0
Q ss_pred HHhCC-CCCEEEECc-hHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHHHH
Q 015759 91 LALGK-RPHIVVATP-GRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKK 168 (401)
Q Consensus 91 ~~~~~-~~~Iii~T~-~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 168 (401)
..... +..|++..- +...+ + .....++.+.+||+..+....+...+.++ +. +.....+++|.||......
T Consensus 75 i~~~~~g~~i~f~g~~d~~~~-i-----k~~~~~~~~~idEa~~~~~~~~~~l~~rl-r~-~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 75 IKILNTGKKFIFKGLNDKPNK-L-----KSGAGIAIIWFEEASQLTFEDIKELIPRL-RE-TGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EEecCCCeEEEeecccCChhH-h-----hCcceeeeehhhhhhhcCHHHHHHHHHHh-hc-cCCccEEEEEcCcCCCccH
Confidence 00111 344555553 22211 1 12334689999999987544343333332 11 1222247899998654334
Q ss_pred HHHHh
Q 015759 169 LQRAC 173 (401)
Q Consensus 169 ~~~~~ 173 (401)
+...+
T Consensus 147 ~~~~f 151 (396)
T TIGR01547 147 VKKRF 151 (396)
T ss_pred HHHHH
Confidence 44433
No 251
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.81 E-value=0.018 Score=51.01 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=34.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
+..|.-+++.||+|+|||...+..+...+.. .+..+++++--. -..++..++...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--------~g~~vl~iS~E~-~~~~~~~r~~~~ 81 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ--------HGVRVGTISLEE-PVVRTARRLLGQ 81 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--------cCceEEEEEccc-CHHHHHHHHHHH
Confidence 4577889999999999997654433333221 256688876533 345555555443
No 252
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.81 E-value=0.013 Score=55.53 Aligned_cols=109 Identities=13% Similarity=0.170 Sum_probs=57.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
..+++.||+|+|||... ..+...+.. .+.+++++.. ..+..+....+.. +
T Consensus 142 npl~L~G~~G~GKTHLl-~Ai~~~l~~--------~~~~v~yi~~-~~f~~~~~~~l~~--------------~------ 191 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM-QAAVHALRE--------SGGKILYVRS-ELFTEHLVSAIRS--------------G------ 191 (445)
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHHHH--------cCCCEEEeeH-HHHHHHHHHHHhc--------------c------
Confidence 45999999999999753 334444432 3455666654 4454443333321 0
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhC-CCCceEEEEeecCchHHH
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVI-PRMRQTYLFSATMTKKVK 167 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 167 (401)
..+.+.. .+...+++++||+|.+.... ....+..+++.+ ....++++.|-+.+..+.
T Consensus 192 -------------~~~~f~~--------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 192 -------------EMQRFRQ--------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred -------------hHHHHHH--------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 0111111 13357899999999775532 233444444332 233455555545555554
Q ss_pred HH
Q 015759 168 KL 169 (401)
Q Consensus 168 ~~ 169 (401)
.+
T Consensus 251 ~l 252 (445)
T PRK12422 251 AM 252 (445)
T ss_pred hh
Confidence 43
No 253
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.78 E-value=0.01 Score=51.08 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=16.0
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+..+++.||+|+|||..+
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999753
No 254
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.78 E-value=0.0034 Score=54.00 Aligned_cols=136 Identities=15% Similarity=0.138 Sum_probs=70.7
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCC-----ceEEEE
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-----LRCAVL 80 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~-----i~~~~~ 80 (401)
+..|..+++.||+|+|||...+-.+...+.. .+..+++++-. +-.+++.+.+..++.... -....+
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~--------~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~ 86 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKN--------FGEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKII 86 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHH--------HT--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEE
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhh--------cCCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEE
Confidence 3467899999999999998655444444432 14568888754 445777788776642210 011111
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc----cccHHHHHHHHHhCCCCceEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN----DDFEKSLDEILNVIPRMRQTY 156 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~----~~~~~~~~~i~~~~~~~~~~i 156 (401)
........ .. -..++.+...+... +.-...+.+|+|-...+.. ..++..+..+...+.....+.
T Consensus 87 d~~~~~~~--------~~--~~~~~~l~~~i~~~--i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ 154 (226)
T PF06745_consen 87 DAFPERIG--------WS--PNDLEELLSKIREA--IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTT 154 (226)
T ss_dssp ESSGGGST---------T--SCCHHHHHHHHHHH--HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEE
T ss_pred eccccccc--------cc--ccCHHHHHHHHHHH--HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 11100000 00 11233333333221 0111237999999987722 334556666666665555566
Q ss_pred EEeecC
Q 015759 157 LFSATM 162 (401)
Q Consensus 157 ~~SAT~ 162 (401)
++++..
T Consensus 155 llt~~~ 160 (226)
T PF06745_consen 155 LLTSEM 160 (226)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 677663
No 255
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.77 E-value=0.0041 Score=61.98 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=70.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE-----
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL----- 80 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~----- 80 (401)
+....-.+|.|=+|+|||.+... ++..+.. .++++|+.+=|..-+..+.-.|+.+. +...-+
T Consensus 682 L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~--------~gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~k 748 (1100)
T KOG1805|consen 682 LAAEDYALILGMPGTGKTTTISL-LIKILVA--------LGKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEK 748 (1100)
T ss_pred HhccchheeecCCCCCchhhHHH-HHHHHHH--------cCCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccc
Confidence 34445578889999999987554 3443333 78889999999998888887777653 221111
Q ss_pred ----------EcCCC--hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc
Q 015759 81 ----------VGGVD--MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 135 (401)
Q Consensus 81 ----------~~~~~--~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~ 135 (401)
..+.+ .........+.+.||.||=--+ +++.|....+|+.|+|||-.+.-
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi-----~~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI-----NHPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC-----CchhhhccccCEEEEcccccccc
Confidence 11111 1112223334678888882221 23445567799999999997543
No 256
>PF13173 AAA_14: AAA domain
Probab=96.76 E-value=0.02 Score=44.24 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=26.8
Q ss_pred CccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 121 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
.-.+|++||+|.+. +|...+..+.+.. +..++ .+|++...
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~i-i~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKI-ILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceE-EEEccchH
Confidence 34589999999874 4778888888865 23434 45555433
No 257
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.76 E-value=0.0032 Score=52.81 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.2
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
.++|++||+|+|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 36999999999999753
No 258
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.75 E-value=0.0082 Score=61.94 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=33.4
Q ss_pred cccCCc-cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHH
Q 015759 5 FCDAGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 63 (401)
Q Consensus 5 ~~~~g~-~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 63 (401)
.++.++ -+++.|+.|+|||++ +-.+...+ .. .+.+++.++||-.-+..+.
T Consensus 357 ~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e~-------~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 357 HVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-EA-------AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred HHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-HH-------cCCeEEEecCcHHHHHHHh
Confidence 344544 478999999999985 33333333 22 5678999999987655443
No 259
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.74 E-value=0.0039 Score=53.59 Aligned_cols=85 Identities=29% Similarity=0.330 Sum_probs=64.3
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC-ChHHHHHHhC-CCCCEEEECchHHHHHHhcCCCCCCCCc
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV-DMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTL 122 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~ 122 (401)
..+.+||||.+-.-+-.+.+.++.+... +..+.-+.+.. ...++...+. ...+|.||||+++..++..+. +.++.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~-L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA-LSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC-CCcccC
Confidence 5778999999998899999999887421 23444455554 4444555554 368999999999999987654 789999
Q ss_pred cEEEEcchh
Q 015759 123 KYLVLDEAD 131 (401)
Q Consensus 123 ~~iIiDE~h 131 (401)
.+||+|--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999877
No 260
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.73 E-value=0.013 Score=55.69 Aligned_cols=54 Identities=24% Similarity=0.164 Sum_probs=36.1
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
..|.-+++.|++|+|||...+. +...+.. .+.+++|+.-. +-..|+..+...++
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq-~a~~~a~--------~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQ-VAARLAA--------AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 4577889999999999986443 2322221 45578888764 44577777766654
No 261
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.73 E-value=0.01 Score=53.86 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=26.8
Q ss_pred CccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 121 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
..++||+||+|.+........+..++...+...++++ +++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Il-t~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFII-TAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEE-EcC
Confidence 4679999999987444455566777777666665544 444
No 262
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.68 E-value=0.018 Score=53.18 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=35.6
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+..|.-+++.|++|+|||...+. +...+.. .+.+++|+.-. +-..|+..+...++
T Consensus 79 i~~GslvLI~G~pG~GKStLllq-~a~~~a~--------~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQ-VAARLAK--------RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 34578899999999999986443 2333322 34568888764 34567766666553
No 263
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.68 E-value=0.012 Score=53.21 Aligned_cols=47 Identities=26% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 64 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 64 (401)
.++++++.||||+|||..+. .+...++. .+..|++ .+...|..++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~--------~g~~V~y-~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLD--------RGKSVIY-RTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH--------CCCeEEE-EEHHHHHHHHHH
Confidence 46899999999999998533 34444443 4455555 444566555543
No 264
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.65 E-value=0.022 Score=50.08 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
...++++.||+|+|||..+
T Consensus 41 ~~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred CcceEEEEcCCCCCHHHHH
Confidence 3467999999999999864
No 265
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.63 E-value=0.0046 Score=57.62 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=20.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+..+..++++++.||+|+|||..+
T Consensus 188 ~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 188 LKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHH
Confidence 456678999999999999999764
No 266
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.62 E-value=0.02 Score=54.04 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.7
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
.++++.||+|+|||..+
T Consensus 37 ~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 37 SSMILWGPPGTGKTTLA 53 (413)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999754
No 267
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.62 E-value=0.026 Score=48.56 Aligned_cols=55 Identities=18% Similarity=0.060 Sum_probs=34.6
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+..|..+++.||+|+|||...+..+...+ . .+..+++++. .+...++.+....++
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~--------~g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGL-R--------DGDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHH-h--------cCCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 34688999999999999976543333322 2 3445777765 334466666555544
No 268
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.60 E-value=0.0073 Score=57.34 Aligned_cols=61 Identities=30% Similarity=0.232 Sum_probs=44.4
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
.++-++|+|..|||||.+++.-+ .+++..-. ....++.+||+.|.+.+..-+.+.|=+++.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRv-AyLlY~~R--~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRV-AYLLYGYR--GPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHH-HHHHhccc--cccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 45678999999999999876543 33443221 122455599999999999988888887764
No 269
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.59 E-value=0.016 Score=54.54 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
..++++.||+|+|||.+
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999985
No 270
>PLN03025 replication factor C subunit; Provisional
Probab=96.59 E-value=0.026 Score=51.32 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=24.9
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
...+++|+||+|.+.... ...+..++...+.... +.++++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~-~il~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTR-FALACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCce-EEEEeCC
Confidence 357899999999875433 3445555555555443 4444443
No 271
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.58 E-value=0.0063 Score=50.82 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=23.2
Q ss_pred CCCCccEEEEcchhhccccccHHHHHHHHHhCCCCc
Q 015759 118 SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 153 (401)
Q Consensus 118 ~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~ 153 (401)
+.....+||+||||.|.+ +....+.+......+..
T Consensus 110 p~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~tt 144 (333)
T KOG0991|consen 110 PPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTT 144 (333)
T ss_pred CCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccc
Confidence 446778999999997755 44555666555554444
No 272
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.0073 Score=59.74 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=25.8
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
..++++||||+|.|....+... .+++..-+.+. ++++++|-+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NAL-LKtLEEPP~~v-~FILaTtd~~ 160 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAM-LKTLEEPPPHV-KFILATTDPQ 160 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHH-HHHHHhcCCCe-EEEEEECChh
Confidence 4578999999998766544433 33455544444 4455555433
No 273
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.50 E-value=0.03 Score=54.64 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=39.7
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
.+--++.+|-|.|||.+..+.+.. ++.. .+.+++|.+|...-+.++.+.+.....
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~-La~f-------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAA-MISF-------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHH-HHHh-------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 344567899999999876554443 3321 356799999999888888888776654
No 274
>CHL00181 cbbX CbbX; Provisional
Probab=96.49 E-value=0.035 Score=49.40 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=17.1
Q ss_pred CCccEEEEcCCCcHHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~ 28 (401)
.|.++++.||+|+|||..+-.
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 466799999999999986543
No 275
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.013 Score=55.70 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.2
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|++||.|+|||.++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~Ari 54 (491)
T PRK14964 36 QSILLVGASGVGKTTCARI 54 (491)
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 5799999999999987554
No 276
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.056 Score=50.17 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=30.7
Q ss_pred CCccEEEEcchhhcc-ccccHHHHHHHHHhCC---CCceEEEEeecCch-HHHHHHHH
Q 015759 120 GTLKYLVLDEADRLL-NDDFEKSLDEILNVIP---RMRQTYLFSATMTK-KVKKLQRA 172 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~-~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~-~~~~~~~~ 172 (401)
...++|+||=+-+.. +......+..++.... +...++.+|||... .+......
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~ 355 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 357899999766442 2333344555555432 23357888999866 44444443
No 277
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.45 E-value=0.02 Score=55.63 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=80.2
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC-C-CceEEEEEcCCCh
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG-I-SLRCAVLVGGVDM 86 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~-~-~i~~~~~~~~~~~ 86 (401)
.+--++..|-=.|||.... +++..++... .+.+++|.+|.+.-++.+++++...... . +-.+....| ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATF------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhC------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 4556677888899998655 5666555433 6888999999999999999988876432 1 111111222 111
Q ss_pred HHHHHHhCCC--CCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 87 MQQTLALGKR--PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 87 ~~~~~~~~~~--~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
...+.++ ..|.++| . .+.....=..++++|+|||+-+.+..+...+-.+.. ..++++++|.|.+.
T Consensus 326 ---~i~f~nG~kstI~FaS------a-rntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~---~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFAS------S-HNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQ---TNCKIIFVSSTNTG 392 (738)
T ss_pred ---EEEecCCCccEEEEEe------c-cCCCCccCCcccEEEEechhhCCHHHHHHHHHHHhc---cCccEEEEecCCCC
Confidence 0011112 2455553 1 111222334789999999997655444444422222 36789999999654
No 278
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.011 Score=60.03 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=26.6
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
..++++||||+|.|.... ...+.+++...+....+|+.+ |-..
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CChh
Confidence 568899999999876543 334555555555555444443 5433
No 279
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.45 E-value=0.068 Score=50.02 Aligned_cols=133 Identities=13% Similarity=0.198 Sum_probs=66.2
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
.-++++|++|+|||++..-.+. .+ .. .+.++++++.-.--. --.++++.++...++.+.....+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~-~l-~~-------~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~d---- 166 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY-YY-QR-------KGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESD---- 166 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HH-HH-------CCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCC----
Confidence 4578999999999987543222 22 21 455666665422111 1223444444434454433222211
Q ss_pred HHHhCCCCCEEEECchHHH-HHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCchHHH
Q 015759 90 TLALGKRPHIVVATPGRLM-DHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 167 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~-~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 167 (401)
|..+. +.+.. +.-..+++||+|=+-++.. ...-..+..+.....+...++.++||......
T Consensus 167 --------------p~~i~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~ 229 (429)
T TIGR01425 167 --------------PVKIASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE 229 (429)
T ss_pred --------------HHHHHHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH
Confidence 11110 11111 0113467888887765433 23445556666666555567788888765444
Q ss_pred HHHHHh
Q 015759 168 KLQRAC 173 (401)
Q Consensus 168 ~~~~~~ 173 (401)
.....+
T Consensus 230 ~~a~~F 235 (429)
T TIGR01425 230 AQAKAF 235 (429)
T ss_pred HHHHHH
Confidence 444433
No 280
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.44 E-value=0.018 Score=53.07 Aligned_cols=48 Identities=19% Similarity=0.242 Sum_probs=31.9
Q ss_pred CccEEEEcchhhcccc-ccHHHHHHHHHhCCC-CceEEEEeecCchHHHH
Q 015759 121 TLKYLVLDEADRLLND-DFEKSLDEILNVIPR-MRQTYLFSATMTKKVKK 168 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~~~~ 168 (401)
++++++||+++.+... .+...+..+++.+.. ..|+++.|..+|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 6889999999977663 445556666665543 34777777666665543
No 281
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.43 E-value=0.028 Score=50.44 Aligned_cols=110 Identities=17% Similarity=0.174 Sum_probs=58.1
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
.++++++.||+|+|||..+. ++...+.. .+..+.++. ..+|+.++...+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~-Aia~~l~~--------~g~~v~~~~-~~~l~~~lk~~~~~------------------- 205 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLA-AIANELAK--------KGVSSTLLH-FPEFIRELKNSISD------------------- 205 (306)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHH--------cCCCEEEEE-HHHHHHHHHHHHhc-------------------
Confidence 46789999999999998643 34444442 344444442 23455444433210
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH--HHHHHHHHhC-CCCceEEEEeecCch
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILNVI-PRMRQTYLFSATMTK 164 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~-~~~~~~i~~SAT~~~ 164 (401)
.+...+++ .+.+.+++|+||........|. ..+..|+... .....+++.|--...
T Consensus 206 --------------~~~~~~l~--------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~ 263 (306)
T PRK08939 206 --------------GSVKEKID--------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFD 263 (306)
T ss_pred --------------CcHHHHHH--------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHH
Confidence 01122222 2446789999999854333343 3455565433 233445555554444
Q ss_pred HHHH
Q 015759 165 KVKK 168 (401)
Q Consensus 165 ~~~~ 168 (401)
.+..
T Consensus 264 el~~ 267 (306)
T PRK08939 264 ELEH 267 (306)
T ss_pred HHHH
Confidence 4443
No 282
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.017 Score=54.84 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=18.2
Q ss_pred cCCccEEEEcCCCcHHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
..|+-+.+.||||+|||++...
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHH
Confidence 3567789999999999997654
No 283
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.40 E-value=0.029 Score=58.51 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=33.0
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 63 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 63 (401)
.++-+++.|+.|+|||++ +-.+...+.. .+.+++.++||-.-+..+.
T Consensus 396 ~~r~~~v~G~AGTGKTt~-l~~~~~~~e~--------~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 396 PARIAAVVGRAGAGKTTM-MKAAREAWEA--------AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred cCCeEEEEeCCCCCHHHH-HHHHHHHHHH--------cCCeEEEEcCcHHHHHHHH
Confidence 356689999999999975 3334433322 5778999999987665543
No 284
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.39 E-value=0.018 Score=55.62 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
..++++||||+|.+....+. .+...+...|....+++.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 46789999999977654443 3444555555555444433
No 285
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.39 E-value=0.0082 Score=60.23 Aligned_cols=57 Identities=23% Similarity=0.159 Sum_probs=42.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
...++|.|.+|||||.+...-+. +++... .....++|+++.|+..+.++.+++.+..
T Consensus 15 ~g~~lV~AgpGSGKT~vL~~Ria-~Li~~~----~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITNKIA-HLIRGC----GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCEEEEecCCCCHHHHHHHHHH-HHHHhc----CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 46789999999999998554433 333221 1145679999999999999999998764
No 286
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.02 Score=54.94 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|++||.|+|||.++-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999987544
No 287
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.01 Score=57.99 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=24.4
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
..++++||||+|++....+ ..+..++...+... .+++++|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v-~FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHV-KFLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCc-EEEEEECC
Confidence 4578999999997755443 34444455544444 34444453
No 288
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.34 E-value=0.1 Score=46.04 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=30.3
Q ss_pred CCccEEEEcchhhccc-cccHHHHHHHHHhCC------CCceEEEEeecCchHHHH
Q 015759 120 GTLKYLVLDEADRLLN-DDFEKSLDEILNVIP------RMRQTYLFSATMTKKVKK 168 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~~~~ 168 (401)
..+++||+|=+-+... ......+..+.+..+ +...++.++||...+...
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~ 208 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALE 208 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHH
Confidence 4578999998775532 334445566655544 445578888886554333
No 289
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.015 Score=57.29 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=20.6
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCc
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 153 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~ 153 (401)
..+.++||||+|+|....+...+ +.+..-|...
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALL-KtLEEPp~~v 150 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALL-KTLEEPPEHV 150 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHH-HHHHcCCCCe
Confidence 46789999999987655443333 3444444443
No 290
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.31 E-value=0.031 Score=56.21 Aligned_cols=17 Identities=35% Similarity=0.329 Sum_probs=14.9
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
.++++.||+|+|||..+
T Consensus 53 ~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 53 GSLILYGPPGVGKTTLA 69 (725)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 47999999999999754
No 291
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.29 E-value=0.018 Score=50.69 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=32.9
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhh-hc--CCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAE-NQ--RTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~-~~--~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
.+++++|+||.|||.. +++...... .. ....-+-+++-+|...=...++..+-.
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 6899999999999974 344443221 11 111235566777776655666665543
No 292
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.025 Score=55.31 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.5
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+..|++||.|+|||.++-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999986544
No 293
>PRK10867 signal recognition particle protein; Provisional
Probab=96.24 E-value=0.074 Score=50.03 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.6
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
.-++++|++|+|||++..-
T Consensus 101 ~vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4578899999999987554
No 294
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.23 E-value=0.0085 Score=55.44 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=33.3
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 62 (401)
..+.++++.||.|+|||+.+ -.+...+.. .+..+++++||-.-|..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~--~~i~~~~~~-------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLI--KAIIDYLRS-------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred cCCcEEEEEcCCCCChhHHH--HHHHHHhcc-------ccceEEEecchHHHHHhc
Confidence 57889999999999999742 222222221 456799999998766555
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.23 E-value=0.082 Score=45.68 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=36.4
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
..|.-+++.|++|+|||......+...+. .+.+++++.-... ..++.+.+..++
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK---------QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh---------CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 45788999999999999865443333322 4566777776543 467777777764
No 296
>PRK04195 replication factor C large subunit; Provisional
Probab=96.23 E-value=0.021 Score=55.13 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.6
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
.+.+++.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999753
No 297
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.23 E-value=0.086 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=17.0
Q ss_pred cE-EEEcCCCcHHHHHHHHHHHHHHH
Q 015759 11 DL-IGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 11 ~~-ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
++ +|.|+||+|||++.- .++..+.
T Consensus 782 nvLYIyG~PGTGKTATVK-~VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVY-SVIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHH
Confidence 44 599999999998743 3455443
No 298
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.015 Score=56.68 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=24.7
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
...++++||||+|.|....+.. +.+.+..-+....+ ++..|-+
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~F-ILaTtep 164 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKF-ILATTDP 164 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceE-EEEeCCh
Confidence 3467899999999876554433 33334443444434 4444433
No 299
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.035 Score=54.58 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=24.9
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
...++++||||+|.+.... ...+...+..-+....+ ++.+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~f-Il~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKF-IFATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEE-EEEeCCh
Confidence 4578899999999765433 33444444544444433 3444533
No 300
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.19 Score=43.95 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=70.3
Q ss_pred ccccCCc-----cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEE
Q 015759 4 WFCDAGK-----DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCA 78 (401)
Q Consensus 4 ~~~~~g~-----~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~ 78 (401)
|.+-.|+ .+++.+|+|+||++.+ -+... ......+-+.+..|+..|.-+-.++..+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLA--KAVAT-----------EAnSTFFSvSSSDLvSKWmGESEkLVkn------ 216 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLA--KAVAT-----------EANSTFFSVSSSDLVSKWMGESEKLVKN------ 216 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHH--HHHHh-----------hcCCceEEeehHHHHHHHhccHHHHHHH------
Confidence 4555554 4999999999999642 22221 1123667777888888776655554211
Q ss_pred EEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc---cHHHHHHH----HHhC--
Q 015759 79 VLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD---FEKSLDEI----LNVI-- 149 (401)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~---~~~~~~~i----~~~~-- 149 (401)
|..+.. -+..++|.|||+|.+.... -.....+| +-.+
T Consensus 217 ----------------------------LFemAR------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 217 ----------------------------LFEMAR------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG 262 (439)
T ss_pred ----------------------------HHHHHH------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc
Confidence 111122 2346689999999765522 11222222 2221
Q ss_pred --CCCceEEEEeecCchHHH-HHHHHhcCCCeEEEecc
Q 015759 150 --PRMRQTYLFSATMTKKVK-KLQRACLKNPVKIEAAS 184 (401)
Q Consensus 150 --~~~~~~i~~SAT~~~~~~-~~~~~~~~~~~~~~~~~ 184 (401)
....-++.+.||..+... ..++..+...+.+....
T Consensus 263 VG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe 300 (439)
T KOG0739|consen 263 VGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPE 300 (439)
T ss_pred cccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCc
Confidence 122358899999876543 34444444444444443
No 301
>PHA00729 NTP-binding motif containing protein
Probab=96.13 E-value=0.046 Score=46.26 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.9
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
.++++.|++|+|||..+
T Consensus 18 ~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 58999999999999753
No 302
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.10 E-value=0.84 Score=51.62 Aligned_cols=220 Identities=16% Similarity=0.165 Sum_probs=104.0
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
+=.+|.|+.|+|||.+ +-.+.. +.+. .+.++++++||..-+.++.+....... +....
T Consensus 447 ~v~ii~G~aGTGKTt~-l~~l~~-~~~~-------~G~~V~~lAPTgrAA~~L~e~~g~~A~-------------Ti~~~ 504 (1960)
T TIGR02760 447 RFIIINGFGGTGSTEI-AQLLLH-LASE-------QGYEIQIITAGSLSAQELRQKIPRLAS-------------TFITW 504 (1960)
T ss_pred CeEEEEECCCCCHHHH-HHHHHH-HHHh-------cCCeEEEEeCCHHHHHHHHHHhcchhh-------------hHHHH
Confidence 5688899999999975 333333 3322 577899999999877666654321110 00000
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC-CCCceEEEEeecC------
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQTYLFSATM------ 162 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~------ 162 (401)
...+.. ..-..|...|+ . ....+..-++|||||+-.+ + ...+..++... +...+++++.=+-
T Consensus 505 l~~l~~--~~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl-~---~~~~~~Ll~~a~~~garvVlvGD~~QL~sV~ 573 (1960)
T TIGR02760 505 VKNLFN--DDQDHTVQGLL---D--KSSPFSNKDIFVVDEANKL-S---NNELLKLIDKAEQHNSKLILLNDSAQRQGMS 573 (1960)
T ss_pred HHhhcc--cccchhHHHhh---c--ccCCCCCCCEEEEECCCCC-C---HHHHHHHHHHHhhcCCEEEEEcChhhcCccc
Confidence 000000 11122323332 1 1123456789999999955 3 22444555433 3456677666552
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHH-HHHhc-CCCCEEEEecchHHHHHHHHHHHh-
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVY-ILTEV-SASSTMVFTRTCDATRLLALMLRN- 239 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~-~~~~~ivf~~~~~~~~~l~~~l~~- 239 (401)
+......+.... ...............+ .+...+...+...+.. .+... ....++|+..+......+....+.
T Consensus 574 aG~~f~~L~~~g--v~t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~t~~dr~~Ln~~iR~~ 649 (1960)
T TIGR02760 574 AGSAIDLLKEGG--VTTYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNA 649 (1960)
T ss_pred cchHHHHHHHCC--CcEEEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcCCcHHHHHHHHHHHHH
Confidence 122222322211 1111111111111111 1111112122222222 22222 344689999987777666655543
Q ss_pred ---cCC------ceEeec-CCCCHHHHHHHHhhccCCC
Q 015759 240 ---LGQ------RAIPIS-GHMSQSKRLGALNKFKAGE 267 (401)
Q Consensus 240 ---~~~------~~~~~~-~~~~~~~r~~~~~~f~~~~ 267 (401)
.|. ....+. ..++..++. ....|+.|.
T Consensus 650 L~~~G~L~~~~~~~~~L~p~~lt~~e~r-~~~~Yr~Gd 686 (1960)
T TIGR02760 650 LKQEGQLSRQEVTVPTLKPVNLTGIQRR-NAAHYKQGM 686 (1960)
T ss_pred HHHcCCcCCCceEEEEeccCCCCHHHHh-hHhhcCCCC
Confidence 332 233333 346666665 336666654
No 303
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.09 E-value=0.043 Score=47.66 Aligned_cols=42 Identities=17% Similarity=-0.028 Sum_probs=28.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 55 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 55 (401)
+..|.-++|.|++|+|||...+-.+...+.. .+..+++++.-
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~--------~g~~vly~s~E 51 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKK--------QGKPVLFFSLE 51 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCceEEEeCC
Confidence 5678889999999999997644433333322 25668888853
No 304
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.06 E-value=0.026 Score=51.76 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
...++||+||+|.+.. .....+..++...+....+++ +++
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEE-EeC
Confidence 4567999999997643 233455556665555554444 444
No 305
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.033 Score=54.46 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=24.6
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
....+++||||+|.+.... ...+...+...+...-+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CCh
Confidence 3568899999999775543 333344444444444333333 443
No 306
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.04 E-value=0.012 Score=58.92 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=46.1
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
...+++|.|.+|||||.+...- +.+++.... ..+.++|+++.++..+..+.+++.......++.+..+
T Consensus 208 ~~~~~lV~agaGSGKT~vl~~r-~ayLl~~~~----~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~v~TF 275 (684)
T PRK11054 208 GEDSLLVLAGAGSGKTSVLVAR-AGWLLARGQ----AQPEQILLLAFGRQAAEEMDERIRERLGTEDITARTF 275 (684)
T ss_pred CCCCeEEEEeCCCCHHHHHHHH-HHHHHHhCC----CCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcEEEeH
Confidence 3457899999999999885443 333333211 1455799999999999999999877543334444443
No 307
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.04 E-value=0.039 Score=48.40 Aligned_cols=39 Identities=8% Similarity=-0.147 Sum_probs=26.8
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 54 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 54 (401)
..|.-++|.||+|+|||...+..+...+. .+.++++++-
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~---------~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS---------RGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh---------CCCcEEEEEe
Confidence 46788999999999999864443333222 4556788774
No 308
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.03 E-value=0.054 Score=52.23 Aligned_cols=55 Identities=18% Similarity=0.073 Sum_probs=40.0
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+..|.-+++.+|+|+|||+..+..+...+ . .+.+++|++- .+-..|+.+.++.++
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~-~--------~ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENAC-A--------NKERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 45678899999999999986544333332 2 4556888774 566789999888775
No 309
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.02 E-value=0.019 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=18.0
Q ss_pred cCCccEEEEcCCCcHHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
..++.+++.||||+|||++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3567899999999999987544
No 310
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.017 Score=56.83 Aligned_cols=40 Identities=23% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
+...+++||||+|.+....+ ..+.+.+...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 35678999999997654333 33444444445555444433
No 311
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.01 E-value=0.11 Score=48.92 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.7
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
.-++++|++|+|||++..-
T Consensus 100 ~vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGK 118 (428)
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4588999999999987554
No 312
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.97 E-value=0.0083 Score=53.96 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=32.1
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
++..+++++++|+||||||.. +-.++..+.... ...+++.+-.+.||
T Consensus 140 ~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~------~~~rivtiEd~~El 186 (323)
T PRK13833 140 AIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA------PEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC------CCceEEEecCCccc
Confidence 455788999999999999974 344444443211 34567777777776
No 313
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.028 Score=54.95 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.8
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|+.||.|+|||.++.+
T Consensus 39 ha~Lf~GPpG~GKTtiAri 57 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARI 57 (624)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4588999999999987554
No 314
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.028 Score=50.67 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.6
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
|.+++.||+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 7899999999999974
No 315
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.92 E-value=0.0098 Score=48.85 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=28.8
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI 62 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 62 (401)
.+.+++++++.||+|+|||..+.. +...+.. .+..++++ +..+|...+
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~--------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVA-IANEAIR--------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHH-HHHHHHH--------TT--EEEE-EHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHH-HHHHhcc--------CCcceeEe-ecCceeccc
Confidence 456789999999999999987544 4444443 44455554 555665554
No 316
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.027 Score=53.73 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.2
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|++||+|+|||..+.+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999986543
No 317
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.027 Score=52.17 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=15.0
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+++.||+|+|||..+..
T Consensus 39 h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3469999999999986443
No 318
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.032 Score=56.50 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
..+.++||||+|.|....+ ..+.+++..-+....+|+ ..|-+.
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFIL-aTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLL-ATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEE-ECCCch
Confidence 4678999999997744333 333344444444443333 344333
No 319
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.026 Score=55.41 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
..++++||||+|.|....+.. +...+..-|....+ ++.+|-
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~f-IL~Ttd 163 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKF-VLATTD 163 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEE-EEEECC
Confidence 468899999999876544332 33333333444434 344453
No 320
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.032 Score=52.30 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=15.7
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|++||+|+|||.++.+
T Consensus 39 ha~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4588999999999987554
No 321
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.77 E-value=0.013 Score=52.37 Aligned_cols=47 Identities=32% Similarity=0.371 Sum_probs=32.0
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
++..+++++++||||||||.. +-.++..+.... ...+++++-.+.++
T Consensus 128 ~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~------~~~ri~tiEd~~El 174 (299)
T TIGR02782 128 AVLARKNILVVGGTGSGKTTL-ANALLAEIAKND------PTDRVVIIEDTREL 174 (299)
T ss_pred HHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC------CCceEEEECCchhh
Confidence 345678999999999999974 333444433211 34578888887776
No 322
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.76 E-value=0.034 Score=56.54 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=43.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
..+++|.|.+|||||.+...-+ .+++... .....++|+++.|+..|.++.+++.++..
T Consensus 17 ~g~~lV~AgaGSGKT~~L~~Ri-a~Li~~~----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 17 PGNLLVLAGAGSGKTRVLTHRI-AWLLSVE----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred CCCEEEEecCCCCHHHHHHHHH-HHHHHcC----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4679999999999999854433 3333321 11456799999999999999999988754
No 323
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.75 E-value=0.0073 Score=54.93 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=30.1
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
++..+++++++||||||||.. +-.++..+- ...+++.+-.+.+|
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~---------~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIP---------PQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccC---------CCCCEEEECCCccc
Confidence 345789999999999999974 333333321 33457777777766
No 324
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.74 E-value=2 Score=42.18 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=73.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCce-------EeecCCCCHHHHHHHHhhccC----CCceEEEE--cCCCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRA-------IPISGHMSQSKRLGALNKFKA----GECNILIC--TDVASRGLD 282 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~~r~~~~~~f~~----~~~~vLv~--T~~~~~Gid 282 (401)
-++.+++|+++.+....+...+.+.|+-. ..+-...+ -..+++.|.. |.-.+|.| -.-+++|||
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 35889999999999999999888765531 12222222 2445555543 44345544 558899999
Q ss_pred CCC--CCEEEEecCCCC----hh----------------------------HHHHHhhhcccCCCCceEEEEeccc
Q 015759 283 IPS--VDMVINYDIPTN----SK----------------------------DYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 283 ~~~--~~~vi~~~~p~s----~~----------------------------~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
+.+ ++.|+.++.|.. ++ ..-|.+|||-|..++-.++.+++..
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 987 788999998853 10 1239999999998888888888765
No 325
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.19 Score=46.34 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=19.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEI 37 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~ 37 (401)
.|+++.||||+|||.+. ..++..+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 57999999999999863 3355555443
No 326
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.73 E-value=0.041 Score=45.24 Aligned_cols=146 Identities=16% Similarity=0.089 Sum_probs=75.1
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHH-HHHHHHHhccCCCceEEEEEcCCCh
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ-ISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
.+.++++..++|.|||.+++--++..+. .+.+|+++-=.+.-..+ -...+.++. ++.....-.+...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g---------~G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVG---------HGKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTW 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHH---------CCCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCcc
Confidence 4578999999999999987765665554 66677776443321000 112222221 2332221111010
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH--HHHHHHHHhCCCCceEEEEeecCch
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
.. ....--.......++.... .+.-..+++||+||+-...+.++- ..+..++...|...-+|+..-.+|+
T Consensus 89 ~~------~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 89 ET------QDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred cC------CCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 00 0000000011111222211 112357899999999987776653 4566677777766655555555667
Q ss_pred HHHHHHHHh
Q 015759 165 KVKKLQRAC 173 (401)
Q Consensus 165 ~~~~~~~~~ 173 (401)
.+.+.++..
T Consensus 161 ~Lie~ADlV 169 (191)
T PRK05986 161 ELIEAADLV 169 (191)
T ss_pred HHHHhCchh
Confidence 666665543
No 327
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.72 E-value=0.038 Score=56.19 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=43.2
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
..+++|.|.+|||||.+...-+. +++... .....++|+++-|+..|.++.+++.++..
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVHRIA-WLMQVE----NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred CCCEEEEecCCCCHHHHHHHHHH-HHHHcC----CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 46899999999999998544333 333211 11456799999999999999999988754
No 328
>PRK06620 hypothetical protein; Validated
Probab=95.72 E-value=0.026 Score=47.93 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=14.2
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
..++++||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999985
No 329
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.041 Score=53.02 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.2
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+++.||+|+|||.++..
T Consensus 37 ha~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARL 55 (504)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3459999999999987543
No 330
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.71 E-value=0.029 Score=52.95 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHH
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~ 26 (401)
++-+++.|.++++.||+|+|||..+
T Consensus 32 ll~aalag~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 32 CLLAALSGESVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHccCCCEEEECCCChhHHHHH
Confidence 3457789999999999999999853
No 331
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.71 E-value=0.12 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=17.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQAL 34 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~ 34 (401)
.++++.||+|+|||.+. ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 67999999999999753 3344444
No 332
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.69 E-value=0.051 Score=52.37 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=42.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 72 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~ 72 (401)
+.+++.-|=|-|||......++-.+.-.. ..+..++++++++.-+..+++.+..+...
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g-----~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDG-----EPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCC-----ccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56888889999999765543333332211 15778999999999999999999887643
No 333
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.67 E-value=0.0084 Score=54.05 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=31.9
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
++..+++++++|+||||||.. +-.++..+.... ...+++++-.+.+|
T Consensus 144 ~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~------~~~rivtIEd~~El 190 (319)
T PRK13894 144 AVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD------PTERVFIIEDTGEI 190 (319)
T ss_pred HHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC------CCceEEEEcCCCcc
Confidence 456889999999999999964 444444332111 34567777777776
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.67 E-value=0.87 Score=37.09 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=26.1
Q ss_pred CCccEEEEcchhhcc-ccccHHHHHHHHHhCCCCceEEEEeecCchHHHHHH
Q 015759 120 GTLKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQ 170 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 170 (401)
...+++|+|...... +......+..+........-++.+++....+.....
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~ 132 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQA 132 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHH
Confidence 356789999988542 222333344444433333445666665444433333
No 335
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.035 Score=54.01 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.8
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|+.||.|+|||..+..
T Consensus 39 hA~Lf~GP~GvGKTTlA~~ 57 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKI 57 (605)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999986544
No 336
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.64 E-value=0.029 Score=55.09 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
+...+++||||+|.+....+ ..+...+...+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 45688999999997754333 33334445555555444433
No 337
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.63 E-value=0.11 Score=51.77 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=74.5
Q ss_pred CCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhc-C-CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC
Q 015759 201 AKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-G-QRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 276 (401)
Q Consensus 201 ~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~ 276 (401)
...|.+....++... .+.++||.++....+..+.+.|++. + ..+..+|+++++.+|.+...+..+|+.+|+|+|..
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 456777777766543 5778999999999999999999865 3 57999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCEEEEec
Q 015759 277 ASRGLDIPSVDMVINYD 293 (401)
Q Consensus 277 ~~~Gid~~~~~~vi~~~ 293 (401)
+. =.-++++..||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 42 24556677777654
No 338
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.62 E-value=0.072 Score=53.74 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=64.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHh----cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-CCCCCCCCCCCEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-ASRGLDIPSVDMVI 290 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-~~~Gid~~~~~~vi 290 (401)
.+.++++.+||..-|...++.+++ .++.+..++|+++..+|...+..+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 567899999999998887777654 4688999999999999999999999999999999984 44457788888877
Q ss_pred E
Q 015759 291 N 291 (401)
Q Consensus 291 ~ 291 (401)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 339
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.61 E-value=0.049 Score=55.03 Aligned_cols=59 Identities=22% Similarity=0.148 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
...+++|.|.+|||||.+.+.-+.. ++... .....++|+++.|+..+.++.+++.+...
T Consensus 13 ~~~~~~V~Ag~GSGKT~~L~~ri~~-ll~~~----~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 13 VTGPCLVLAGAGSGKTRVITNKIAY-LIQNC----GYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHHH-HHHhc----CCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 3568999999999999885543333 33221 11456699999999999999999987643
No 340
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.58 E-value=0.04 Score=49.33 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=31.0
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
-++|++||+|+|||..+ +++...... ...+.+=+.-|.+-+.++...+++
T Consensus 163 pSmIlWGppG~GKTtlA------rlia~tsk~---~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLA------RLIASTSKK---HSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHH------HHHHhhcCC---CceEEEEEeccccchHHHHHHHHH
Confidence 46899999999999743 222211111 334566667777666666666654
No 341
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.57 E-value=0.089 Score=42.03 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred CCCccEEEEcchhhcccccc--HHHHHHHHHhCCCCceEEEEeecCchHHHHHHHH
Q 015759 119 LGTLKYLVLDEADRLLNDDF--EKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 172 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 172 (401)
...+++||+||+-.....++ .+.+..+++..|...-+|+.+-.+|+.+.+.++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 45789999999997766544 3566777788877766766666677777666544
No 342
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.56 E-value=0.018 Score=56.38 Aligned_cols=54 Identities=30% Similarity=0.490 Sum_probs=47.2
Q ss_pred HhhccCCCceEEEEcCCCCCCCCCCCCCEE--------EEecCCCChhHHHHHhhhcccCCC
Q 015759 260 LNKFKAGECNILICTDVASRGLDIPSVDMV--------INYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 260 ~~~f~~~~~~vLv~T~~~~~Gid~~~~~~v--------i~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
-++|..|+..|-|-+.+++.||.+..-+.| |.+.+|||.+.-+|..||++|..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 468999999999999999999999765433 558999999999999999999875
No 343
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.066 Score=52.05 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
....+++||||+|.+....+. .+...+...|....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~n-aLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHHH-HHHHHHhCCCCCEEEEEEe
Confidence 356789999999987654433 3333344444444444443
No 344
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.47 E-value=0.1 Score=49.77 Aligned_cols=55 Identities=20% Similarity=0.125 Sum_probs=36.5
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+..|.-+++.|++|+|||...+. +...+.. .+.+++|+... +-..|+..+...++
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq-~a~~~a~--------~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQ-VACQLAK--------NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 34678899999999999986443 3333322 34468888864 44577776666553
No 345
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.46 E-value=0.055 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHH
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
++.+.++.|++..||+|+|||..|..
T Consensus 203 ~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 203 LPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 46778999999999999999977654
No 346
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.46 E-value=0.13 Score=52.32 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.1
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
...|+++.||+|+|||...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 3578999999999999753
No 347
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.44 E-value=0.15 Score=51.31 Aligned_cols=92 Identities=18% Similarity=0.242 Sum_probs=70.2
Q ss_pred CCChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHh-cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCC
Q 015759 201 AKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 277 (401)
Q Consensus 201 ~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~ 277 (401)
...|.......+.. ..+.++||.++++..+.++++.|++ .+..+..+||+++..+|.+.+.....|+.+|+|+|...
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 34455444333321 2467899999999999999999977 47889999999999999999999999999999999843
Q ss_pred CCCCCCCCCCEEEEec
Q 015759 278 SRGLDIPSVDMVINYD 293 (401)
Q Consensus 278 ~~Gid~~~~~~vi~~~ 293 (401)
. -..+.++..||.-+
T Consensus 252 l-~~p~~~l~liVvDE 266 (679)
T PRK05580 252 L-FLPFKNLGLIIVDE 266 (679)
T ss_pred h-cccccCCCEEEEEC
Confidence 2 24566778777544
No 348
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.43 E-value=0.031 Score=50.21 Aligned_cols=46 Identities=17% Similarity=0.066 Sum_probs=30.6
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 61 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 61 (401)
..|+-+.|.+|+|+|||...+..+. .... .+..++++.....+-.+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~-~~~~--------~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIA-EAQK--------AGGTAAFIDAEHALDPV 98 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH-HHHH--------cCCcEEEEcccchhHHH
Confidence 4567889999999999986544333 3332 45667888766555443
No 349
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.41 E-value=0.097 Score=51.85 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.7
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 5679999999999986544
No 350
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.41 E-value=0.085 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.135 Sum_probs=18.5
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
.+-.|+.+++.||+|+|||..
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred EeCCCCEEEEECCCCCChhHH
Confidence 456899999999999999974
No 351
>PHA00350 putative assembly protein
Probab=95.41 E-value=0.13 Score=47.55 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=14.2
Q ss_pred EEEEcCCCcHHHHHHHH
Q 015759 12 LIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~ 28 (401)
.++.|.+|||||+-++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 57899999999987654
No 352
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.39 E-value=0.073 Score=53.87 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=16.2
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
...|+++.||+|+|||..+
T Consensus 206 ~~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3578999999999999753
No 353
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.07 Score=48.59 Aligned_cols=40 Identities=28% Similarity=0.494 Sum_probs=24.2
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
....+||+||++.|.. +....+...+..-+... .+++++.
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~-~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNT-RFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCe-EEEEEcC
Confidence 5688999999997754 33344444444444444 4444444
No 354
>PRK05973 replicative DNA helicase; Provisional
Probab=95.38 E-value=0.04 Score=47.25 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=38.4
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+..|.-++|.|++|+|||...+..+...+. .+.+++|++---. .+|+.+++..++
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---------~Ge~vlyfSlEes-~~~i~~R~~s~g 115 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK---------SGRTGVFFTLEYT-EQDVRDRLRALG 115 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---------cCCeEEEEEEeCC-HHHHHHHHHHcC
Confidence 457788999999999999865543433332 4556788765433 578888887764
No 355
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.37 E-value=0.087 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=18.7
Q ss_pred ccccCCccEEEEcCCCcHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTG 24 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~ 24 (401)
-.+..|+.+++.||.|+|||.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cccCCCCEEEEECCCCCCHHH
Confidence 356789999999999999996
No 356
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.37 E-value=0.067 Score=51.88 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
.....++||||+|++....+ ..+...+...|....+++.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 35678999999998755433 33444445444444344433
No 357
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.18 Score=46.22 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=59.8
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..|.=++|-+.+|.|||+.. +-+...+.. .+ ++||++-- +-..|+.-+...++-..
T Consensus 91 V~Gs~iLIgGdPGIGKSTLL-LQva~~lA~--------~~-~vLYVsGE-ES~~QiklRA~RL~~~~------------- 146 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLL-LQVAARLAK--------RG-KVLYVSGE-ESLQQIKLRADRLGLPT------------- 146 (456)
T ss_pred ccccEEEEccCCCCCHHHHH-HHHHHHHHh--------cC-cEEEEeCC-cCHHHHHHHHHHhCCCc-------------
Confidence 46777899999999999863 334444442 33 79999885 45699998888875221
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhcccc
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND 136 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 136 (401)
.++.+...-.+.+.+.. +.-.+.+++|+|-++.+...
T Consensus 147 ----------~~l~l~aEt~~e~I~~~---l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 ----------NNLYLLAETNLEDIIAE---LEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred ----------cceEEehhcCHHHHHHH---HHhcCCCEEEEeccceeecc
Confidence 23444433333333332 12245789999999977664
No 358
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.35 E-value=0.12 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=19.3
Q ss_pred cccccCCccEEEEcCCCcHHHHH
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~ 25 (401)
|-.+-.|+..+|.||.|+|||..
T Consensus 163 l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 163 IAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred ecccccCceEEEeCCCCCChhHH
Confidence 34566899999999999999964
No 359
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.34 E-value=0.11 Score=51.80 Aligned_cols=125 Identities=22% Similarity=0.223 Sum_probs=73.4
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
-+++.|+-|=|||.+.-+.+ ..+.+.. ...+++|.+|+.+-++.+.+.+.+-....|.+..+.....-.. .
T Consensus 233 ~~vlTAdRGRGKSA~lGi~~-~~~~~~~------~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~~--~ 303 (758)
T COG1444 233 ALVLTADRGRGKSAALGIAL-AAAARLA------GSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGEI--R 303 (758)
T ss_pred eEEEEcCCCCcHhHHHhHHH-HHHHHhc------CCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccce--e
Confidence 68889999999998877655 2332211 2458999999999888887766654433333221111110000 0
Q ss_pred HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 91 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
....+...|=+-+|+... ..-+++|||||=-+ --+.+..+....+ .++||.|..
T Consensus 304 ~~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI----plplL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 304 EVSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI----PLPLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred eecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC----ChHHHHHHHhhcC----ceEEEeeec
Confidence 000012234455555431 12679999999854 4556777766644 678899974
No 360
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.33 E-value=0.41 Score=44.44 Aligned_cols=145 Identities=15% Similarity=0.091 Sum_probs=64.5
Q ss_pred EEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHH----HHHHHHHhccCCCceEEEE-EcCCChH
Q 015759 13 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ----ISEQFEALGSGISLRCAVL-VGGVDMM 87 (401)
Q Consensus 13 ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q----~~~~l~~~~~~~~i~~~~~-~~~~~~~ 87 (401)
++.++.|+|||......++..++..+ ....++++ |+..-+.+ ....+..+... .+....- ..+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE-
Confidence 46789999999988777777766532 22455555 55544444 23334444333 1222211 011000
Q ss_pred HHHHHhCCCCCEEEECchH--HHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC--c
Q 015759 88 QQTLALGKRPHIVVATPGR--LMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM--T 163 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~--l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~--~ 163 (401)
.+.++..|.+.+.+. -...+.. ..++++++||+-...+..+...+........... .+.+|.|+ .
T Consensus 72 ----~~~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~ 140 (384)
T PF03237_consen 72 ----ILPNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPG 140 (384)
T ss_dssp ----EETTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SS
T ss_pred ----EecCceEEEEeccccccccccccc------cccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCC
Confidence 012345566666332 1112222 3577999999887666555555544444443322 22444443 3
Q ss_pred hHHHHHHHHhcCCC
Q 015759 164 KKVKKLQRACLKNP 177 (401)
Q Consensus 164 ~~~~~~~~~~~~~~ 177 (401)
.....+........
T Consensus 141 ~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 141 GWFYEIFQRNLDDD 154 (384)
T ss_dssp SHHHHHHHHHHCTS
T ss_pred CceeeeeehhhcCC
Confidence 34444555444444
No 361
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.33 E-value=0.015 Score=52.86 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=28.5
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
+..+++++++|+||||||.. +-.++..+- ...+++.+=-+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip---------~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP---------AIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC---------CCCeEEEecCCCcc
Confidence 45789999999999999974 343443332 34456666555554
No 362
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.075 Score=51.27 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=24.7
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
.....++||||+|.+.... ...+...+...|+...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3568899999999775433 334444455555555444444
No 363
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.30 E-value=0.36 Score=43.12 Aligned_cols=131 Identities=19% Similarity=0.228 Sum_probs=72.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE-EcCCChHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL-VGGVDMMQQ 89 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~-~~~~~~~~~ 89 (401)
-++++|-.|+|||++..- +..++.. .+.++++.+--.--+ --.++|+.|+...++.+..- .|+.
T Consensus 141 Vil~vGVNG~GKTTTIaK-LA~~l~~--------~g~~VllaA~DTFRA-aAiEQL~~w~er~gv~vI~~~~G~D----- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTIAK-LAKYLKQ--------QGKSVLLAAGDTFRA-AAIEQLEVWGERLGVPVISGKEGAD----- 205 (340)
T ss_pred EEEEEecCCCchHhHHHH-HHHHHHH--------CCCeEEEEecchHHH-HHHHHHHHHHHHhCCeEEccCCCCC-----
Confidence 478889999999997543 3333332 666777666533221 12334444444444554432 1221
Q ss_pred HHHhCCCCCEEEECchHH-HHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCc------eEEEEeec
Q 015759 90 TLALGKRPHIVVATPGRL-MDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMR------QTYLFSAT 161 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l-~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~------~~i~~SAT 161 (401)
|..+ .+.+.. ....++++|++|=|-++-. .++-..+..|.+.+.+.. -++.+-||
T Consensus 206 --------------pAaVafDAi~~---Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 206 --------------PAAVAFDAIQA---AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred --------------cHHHHHHHHHH---HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 2211 222222 1345788999999998765 556677777777665433 34455888
Q ss_pred CchHHHHHHHHh
Q 015759 162 MTKKVKKLQRAC 173 (401)
Q Consensus 162 ~~~~~~~~~~~~ 173 (401)
...+-....+.+
T Consensus 269 tGqnal~QAk~F 280 (340)
T COG0552 269 TGQNALSQAKIF 280 (340)
T ss_pred cChhHHHHHHHH
Confidence 766544444443
No 364
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.11 Score=48.37 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=26.7
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHH
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKV 166 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 166 (401)
....++||||+|.|..... ..+-..+..-+... ++++++|-+..+
T Consensus 116 ~~~kViiIDead~m~~~aa-naLLk~LEep~~~~-~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAA-NALLKAVEEPPPRT-VWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHHH-HHHHHHhhcCCCCC-eEEEEECChHHC
Confidence 4678999999998855433 33444444444444 555666554433
No 365
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.20 E-value=0.11 Score=52.00 Aligned_cols=76 Identities=17% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHh----cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-CCCCCCCCCCCEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-ASRGLDIPSVDMVI 290 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-~~~Gid~~~~~~vi 290 (401)
.+.++++.+||..-|...++.+++ .|+.+..++|+++..+|...++...+|+.+|+|+|.. +...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 567999999999999888777665 3789999999999999999999999999999999994 44457777788777
Q ss_pred E
Q 015759 291 N 291 (401)
Q Consensus 291 ~ 291 (401)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 366
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.19 E-value=0.16 Score=49.24 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=69.3
Q ss_pred CChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhc-CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCC
Q 015759 202 KYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS 278 (401)
Q Consensus 202 ~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~ 278 (401)
..|.......+.. ..+.++++.+++...+.++++.|++. +..+..+||+++..+|.+...+..+|+.+|+|+|...-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 4455544433322 24678999999999999999999764 67899999999999999999999999999999998432
Q ss_pred CCCCCCCCCEEEEec
Q 015759 279 RGLDIPSVDMVINYD 293 (401)
Q Consensus 279 ~Gid~~~~~~vi~~~ 293 (401)
. ..+.++..||.-+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 3566777777533
No 367
>PRK08760 replicative DNA helicase; Provisional
Probab=95.18 E-value=0.13 Score=49.47 Aligned_cols=115 Identities=18% Similarity=0.070 Sum_probs=60.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|.=++|.|+||.|||...+-.+...+.. .+..+++++.-- -..|+..++.......+. ..+..+..
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~--------~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~--~~i~~g~l 294 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIK--------SKKGVAVFSMEM-SASQLAMRLISSNGRINA--QRLRTGAL 294 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHh--------cCCceEEEeccC-CHHHHHHHHHHhhCCCcH--HHHhcCCC
Confidence 3456778889999999997654433332222 345577776643 346777777655433221 11222221
Q ss_pred hHHHHH-------HhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 86 MMQQTL-------ALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 86 ~~~~~~-------~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
....+. .+. +..+.|. |++.+...+.... .-..+++||||=.+.+.
T Consensus 295 ~~~e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 295 EDEDWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 111111 111 2445544 3344433333221 12347899999999664
No 368
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.096 Score=51.78 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.4
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|+.||.|+|||.++..
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARI 57 (585)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4469999999999986544
No 369
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.15 E-value=0.15 Score=48.43 Aligned_cols=117 Identities=17% Similarity=0.065 Sum_probs=58.3
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|.=+++.|+||+|||...+-.+...... .+..+++++.- .-..|+..++-..... +....+..+.-
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~--------~g~~v~~fSlE-m~~~~l~~Rl~~~~~~--v~~~~~~~~~l 259 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR--------EGKPVLFFSLE-MSAEQLGERLLASKSG--INTGNIRTGRF 259 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEECC-CCHHHHHHHHHHHHcC--CCHHHHhcCCC
Confidence 4567778999999999997644433232222 45567777643 3445666555433222 22222222221
Q ss_pred hHHHH-------HHhCCCCCEEEECc-----hHHHHHHhcCCCCCCCCccEEEEcchhhccc
Q 015759 86 MMQQT-------LALGKRPHIVVATP-----GRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 135 (401)
Q Consensus 86 ~~~~~-------~~~~~~~~Iii~T~-----~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~ 135 (401)
....+ ..+. +.++.|... +.+...+.... .....+++||||=.|.+..
T Consensus 260 ~~~~~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 260 NDSDFNRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIK-RKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEecccccCC
Confidence 11111 1121 244555432 33333332211 0122588999999987653
No 370
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.14 E-value=0.051 Score=50.27 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.3
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+.+++.||+|+|||..+
T Consensus 37 ~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIA 53 (355)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45799999999999754
No 371
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.12 E-value=0.23 Score=40.04 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=26.3
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
...+++||||+|.|... ....+.+.+..-|....++++|..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECC
Confidence 56889999999976443 445566666666666645444443
No 372
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.12 E-value=0.069 Score=54.13 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC-----CceEe-ecCCCCHHHHHHHHhhccCCCceEEEEcCCC
Q 015759 206 CYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG-----QRAIP-ISGHMSQSKRLGALNKFKAGECNILICTDVA 277 (401)
Q Consensus 206 ~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~ 277 (401)
..+..+.....+.++++.+||..-+.++++.|++.. ..+.. +|+.++..++++.+++|.+|+.+|||+|+.+
T Consensus 114 g~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 114 GLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 334455556677999999999999998888887653 33333 8999999999999999999999999999854
No 373
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.12 E-value=0.19 Score=47.81 Aligned_cols=130 Identities=12% Similarity=0.033 Sum_probs=72.2
Q ss_pred ccEEEEcCCCcHHHHHHH-HHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 10 KDLIGLAQTGSGKTGAFA-LPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~-~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
+-++|..|-+-|||..+. +.+...+.... .+..+.|++|+.+-+.+....++....... ..
T Consensus 87 ~e~fI~v~RkngKt~l~A~i~~~~~l~~~~------~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~-~l----------- 148 (546)
T COG4626 87 KEAFIFIPRKNGKSTLAAGIMMTALLLNWR------SGAGIYILAPSVEQAANSFNPARDMVKRDD-DL----------- 148 (546)
T ss_pred EEEEEEEecCCchHHHHHHHHHHHHHhhhh------cCCcEEEEeccHHHHHHhhHHHHHHHHhCc-ch-----------
Confidence 457899999999997655 32222333332 677899999999999998888887653321 00
Q ss_pred HHHHhCCCCC---EEEECchHHHHHHhcC-CCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC--CCceEEEEee
Q 015759 89 QTLALGKRPH---IVVATPGRLMDHLTNT-KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP--RMRQTYLFSA 160 (401)
Q Consensus 89 ~~~~~~~~~~---Iii~T~~~l~~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SA 160 (401)
........+ |...--...+..+... ....=.+..+.|+||.|.....+ ..+..+...+. +..++++.|.
T Consensus 149 -~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 149 -RDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred -hhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 000001111 2222111222222221 11233456799999999765543 45555555443 3455666665
No 374
>PRK06904 replicative DNA helicase; Validated
Probab=95.11 E-value=0.22 Score=47.69 Aligned_cols=118 Identities=18% Similarity=0.101 Sum_probs=61.0
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC--
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG-- 83 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~-- 83 (401)
+..|.=+++.|.||.|||..++- +...+... .+..+++++.- .-..|+..++-..... +....+..+
T Consensus 218 l~~G~LiiIaarPg~GKTafaln-ia~~~a~~-------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~g~~ 286 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMN-LCENAAMA-------SEKPVLVFSLE-MPAEQIMMRMLASLSR--VDQTKIRTGQN 286 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHH-HHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHhhCC--CCHHHhccCCC
Confidence 34566688899999999975443 33333211 35557777664 4467777776654332 222222222
Q ss_pred CChHHH------HHHhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhccc
Q 015759 84 VDMMQQ------TLALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN 135 (401)
Q Consensus 84 ~~~~~~------~~~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~ 135 (401)
.+.... ...+....++.|- |++.+........ .....+++||||=.+.+..
T Consensus 287 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 287 LDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 222111 1122223446663 4444443332211 0123578999999997643
No 375
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.017 Score=50.69 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=20.4
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
++..|+++.||||||||+.+. .+..++
T Consensus 95 L~KSNILLiGPTGsGKTlLAq--TLAk~L 121 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ--TLAKIL 121 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH--HHHHHh
Confidence 467899999999999997533 444444
No 376
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.08 E-value=0.032 Score=48.19 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=12.3
Q ss_pred EEEEcCCCcHHHHH
Q 015759 12 LIGLAQTGSGKTGA 25 (401)
Q Consensus 12 ~ii~a~tGsGKT~~ 25 (401)
++|.|++|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 377
>PRK04328 hypothetical protein; Provisional
Probab=95.07 E-value=0.049 Score=47.53 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=36.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
..|..+++.||+|+|||...+..+...+. .+..++|++ +.+-..++.+.+..++
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~---------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQ---------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHh---------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 36788999999999999764443333332 455577776 4445567777777765
No 378
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.03 E-value=0.16 Score=48.33 Aligned_cols=115 Identities=17% Similarity=0.056 Sum_probs=59.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE-cCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV-GGV 84 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~-~~~ 84 (401)
+..|.=++|.|+||+|||...+-.+...+.. .+..+++++.-- -..|+.+++.......+ ...+. |..
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--------~g~~vl~~SlEm-~~~~i~~R~~~~~~~v~--~~~~~~g~l 260 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK--------EGKPVAFFSLEM-SAEQLAMRMLSSESRVD--SQKLRTGKL 260 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--------CCCeEEEEeCcC-CHHHHHHHHHHHhcCCC--HHHhccCCC
Confidence 4567778999999999997644333332221 345577776643 45666666655443322 11121 222
Q ss_pred ChHHH------HHHhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 85 DMMQQ------TLALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 85 ~~~~~------~~~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
+.... ...+. +..+.|. |++.+...+.... .-..+++||||=.+.+.
T Consensus 261 ~~~~~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 261 SDEDWEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 22111 11122 2345542 3344444333211 11247899999998664
No 379
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.02 E-value=0.094 Score=42.46 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=37.4
Q ss_pred CCCccEEEEcchhhccccccH--HHHHHHHHhCCCCceEEEEeecCchHHHHHHHH
Q 015759 119 LGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 172 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 172 (401)
-..+++||+||+-...+.++- +.+..++...|....+++..-.+|+.+.++++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 357899999999977775543 456677777777765665555567766666554
No 380
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.02 E-value=0.041 Score=56.81 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=75.5
Q ss_pred hcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEec
Q 015759 214 EVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD 293 (401)
Q Consensus 214 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~ 293 (401)
.....++|+|+.....-..+...+...++......+ .++-...+..|++=. ..|+-+...+-|+|+-...+|+..+
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~I~-clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKSID-CLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhcccce-EEEEEeccCcccccHHhhhhhheec
Confidence 345678999999887777777777766665544433 233355677777622 3557788889999999999999999
Q ss_pred CCCChhHHHHHhhhcccCCCCc
Q 015759 294 IPTNSKDYIHRVGRTARAGRTG 315 (401)
Q Consensus 294 ~p~s~~~~~Q~~GR~~R~g~~g 315 (401)
+-.++.+-.|.+||+.|.|++.
T Consensus 1294 PiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1294 PILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred cccCchHHHhhhhhhhhccccc
Confidence 9999999999999999999763
No 381
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.97 E-value=0.043 Score=47.92 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEI 37 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~ 37 (401)
++|.||||||||++ +..++.++..+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 77889999999987 55577777654
No 382
>PRK09354 recA recombinase A; Provisional
Probab=94.97 E-value=0.069 Score=48.51 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=31.2
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 60 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 60 (401)
.|+-+.|.+|+|+|||...+..+.+.. . .+..++|+..-..+-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~-~--------~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ-K--------AGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H--------cCCcEEEECCccchHH
Confidence 467888999999999987554433332 2 5667888888776654
No 383
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.95 E-value=0.14 Score=45.32 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=14.0
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
..+++.||+|+|||+.
T Consensus 44 ~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 44 GFILITGEVGAGKTTL 59 (269)
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3688999999999975
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.95 E-value=0.74 Score=41.68 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=28.1
Q ss_pred CCccEEEEcchhhccc-cccHHHHHHHHHhC------CCCceEEEEeecCchH
Q 015759 120 GTLKYLVLDEADRLLN-DDFEKSLDEILNVI------PRMRQTYLFSATMTKK 165 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~------~~~~~~i~~SAT~~~~ 165 (401)
.++++||+|=+-++.. ......+..+...+ .+...++.++||...+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 4678999998876543 33334555554432 2333578889996543
No 385
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.91 E-value=0.057 Score=47.49 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=39.5
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 72 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~ 72 (401)
+..|+.++|.|++|+|||...+-.+...+. .+..+++++- .+...++.+.+..++..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~---------~ge~vlyvs~-~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAR---------EGEPVLYVST-EESPEELLENARSFGWD 76 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHh---------cCCcEEEEEe-cCCHHHHHHHHHHcCCC
Confidence 457899999999999999864443333322 4455777765 56678888888776544
No 386
>PF05729 NACHT: NACHT domain
Probab=94.89 E-value=0.24 Score=39.82 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=16.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLE 36 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~ 36 (401)
++|.|++|+|||... ..+...+..
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHh
Confidence 789999999999753 334444443
No 387
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.89 E-value=0.16 Score=48.76 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+++.||+|+|||+.
T Consensus 215 ~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCcceEEECCCCCcHHHH
Confidence 457899999999999974
No 388
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.88 E-value=0.1 Score=48.77 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+++.||+|+|||+.
T Consensus 164 ~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCCceEEECCCCCChHHH
Confidence 457899999999999975
No 389
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.87 E-value=0.1 Score=43.26 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=17.3
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQAL 34 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~ 34 (401)
+.+++.||+|+|||..+.. +...+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~-~~~~l 38 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALA-LAKAL 38 (188)
T ss_pred eEEEEECCCCCCHHHHHHH-HHHHH
Confidence 5689999999999975433 33443
No 390
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.86 E-value=0.089 Score=56.73 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=68.4
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
.|++++|.|..|||||.+.+--++..+.... ...++|+++=|+..+.++.+++.+..... +. ......
T Consensus 13 ~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~------~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~~-----~~p~~~ 80 (1232)
T TIGR02785 13 RGQNILVSASAGSGKTAVLVERIIKKILRGV------DIDRLLVVTFTNAAAREMKERIEEALQKA-LQ-----QEPNSK 80 (1232)
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC------CHhhEEEEeccHHHHHHHHHHHHHHHHHH-Hh-----cCchhH
Confidence 6889999999999999986665555554321 33569999999999999888887643211 00 000001
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCC-CccEEEEcchhh
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLG-TLKYLVLDEADR 132 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~-~~~~iIiDE~h~ 132 (401)
.....+..-...-|+|.+.|...+.....+.+. +..+=|.||...
T Consensus 81 ~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 81 HLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 111112222457799999987666543322111 123446887774
No 391
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.78 E-value=0.17 Score=45.75 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.6
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
.++++.||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
No 392
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.75 E-value=0.12 Score=51.65 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=15.2
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+-.|+.||.|+|||.++-+
T Consensus 41 HAYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3468999999999987544
No 393
>PHA02533 17 large terminase protein; Provisional
Probab=94.72 E-value=0.17 Score=49.23 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=71.1
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCC--ceEEEEEcCCCh
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS--LRCAVLVGGVDM 86 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~--i~~~~~~~~~~~ 86 (401)
++-.++..+=..|||.+....++..++.. .+..+++++|+..-+..+.+.++.+....+ +.......+
T Consensus 74 ~R~~ii~~aRq~GKStl~a~~al~~a~~~-------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~i~~~~--- 143 (534)
T PHA02533 74 NRFNACNLSRQLGKTTVVAIFLLHYVCFN-------KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQPGIVEWN--- 143 (534)
T ss_pred CeEEEEEEcCcCChHHHHHHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcceeecC---
Confidence 45557788889999988765454444422 456899999999999888888876543221 110000000
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCC--CceEEEEeec
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--MRQTYLFSAT 161 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT 161 (401)
.....+.+++.|.+.|.+. ....=.+.+++++||+|.+.+ +...+..+...+.. ..+++++|.+
T Consensus 144 -~~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~iiiSTp 209 (534)
T PHA02533 144 -KGSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKIIITSTP 209 (534)
T ss_pred -ccEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEEEEECC
Confidence 0111123455554544221 111112467899999996543 33444444444432 2334444444
No 394
>PRK09087 hypothetical protein; Validated
Probab=94.72 E-value=0.11 Score=44.54 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.9
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
.-++++||+|+|||..
T Consensus 45 ~~l~l~G~~GsGKThL 60 (226)
T PRK09087 45 PVVVLAGPVGSGKTHL 60 (226)
T ss_pred CeEEEECCCCCCHHHH
Confidence 3499999999999984
No 395
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=0.091 Score=51.46 Aligned_cols=42 Identities=33% Similarity=0.374 Sum_probs=33.1
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
+.+..++|+|||-..+|..-...++..++.+...+ .+++-|.
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~r-TVlvIAH 661 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGR-TVLVIAH 661 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCC-eEEEEeh
Confidence 56788999999999999888888888887776664 5565554
No 396
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.65 E-value=0.052 Score=53.24 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=24.6
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEE
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYL 157 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 157 (401)
+.+.+++|+||+-.-+|......+.+.+..+.+.+-++.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIi 524 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVV 524 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 456778888888877776666666555555444443433
No 397
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.65 E-value=0.21 Score=46.02 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=60.3
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
...+.+-+.|++|.|||.. +.......... .+.+ ++--+...++.+.+.++. ++..
T Consensus 60 ~~~~GlYl~G~vG~GKT~L-----md~f~~~lp~~---~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~- 115 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTML-----MDLFYDSLPIK---RKRR----VHFHEFMLDVHSRLHQLR-----------GQDD- 115 (362)
T ss_pred CCCceEEEECCCCCchhHH-----HHHHHHhCCcc---cccc----ccccHHHHHHHHHHHHHh-----------CCCc-
Confidence 4578899999999999973 22222211100 1112 133466677777777653 1100
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-CCceEEEEeecCchH
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKK 165 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~ 165 (401)
- ...+.+.+ .....++.|||+| +.+..-.-.+..++..+- ...-++..|-++|++
T Consensus 116 ------------~----l~~va~~l-------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 116 ------------P----LPQVADEL-------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred ------------c----HHHHHHHH-------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 0 01111111 2345689999999 556555556666666553 334455555555554
No 398
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.64 E-value=0.1 Score=45.84 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=58.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..|.=+++.|+||.|||..++-.+...+.. .+..+++++.--. ..++..++-...... ....+..+...
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~--------~~~~vly~SlEm~-~~~l~~R~la~~s~v--~~~~i~~g~l~ 85 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALN--------GGYPVLYFSLEMS-EEELAARLLARLSGV--PYNKIRSGDLS 85 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHT--------TSSEEEEEESSS--HHHHHHHHHHHHHTS--THHHHHCCGCH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHh--------cCCeEEEEcCCCC-HHHHHHHHHHHhhcc--hhhhhhccccC
Confidence 455668899999999998765544444432 2467888887432 344554444332222 11111112111
Q ss_pred HHHHH-------HhCCCCCEE-EECch----HHHHHHhcCCCCCCCCccEEEEcchhhccc
Q 015759 87 MQQTL-------ALGKRPHIV-VATPG----RLMDHLTNTKGFSLGTLKYLVLDEADRLLN 135 (401)
Q Consensus 87 ~~~~~-------~~~~~~~Ii-i~T~~----~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~ 135 (401)
..... .+. ...++ ..+|. .+...+..... ....+++||||=.|.+..
T Consensus 86 ~~e~~~~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 86 DEEFERLQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp HHHHHHHHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBT
T ss_pred HHHHHHHHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcC
Confidence 11111 122 23344 33333 44444332211 126788999999997665
No 399
>PRK13695 putative NTPase; Provisional
Probab=94.62 E-value=0.44 Score=38.96 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.1
Q ss_pred cEEEEcCCCcHHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~ 27 (401)
++++.+++|+|||+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999998543
No 400
>CHL00176 ftsH cell division protein; Validated
Probab=94.61 E-value=0.17 Score=50.25 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
.+++++.||+|+|||+.
T Consensus 216 p~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLL 232 (638)
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999974
No 401
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.2 Score=49.69 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=25.0
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
+...+++||||+|.+.... ...+...+...|... ++++.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 4678899999999875432 334444455544444 4445555
No 402
>PRK07004 replicative DNA helicase; Provisional
Probab=94.59 E-value=0.21 Score=47.75 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=59.0
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE-EcCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL-VGGV 84 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~-~~~~ 84 (401)
+..|.=+++.|.||+|||...+-.+...... .+..+++++.- .-..|+..++-..... +....+ .|..
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--------~~~~v~~fSlE-M~~~ql~~R~la~~~~--v~~~~i~~g~l 278 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--------YGLPVAVFSME-MPGTQLAMRMLGSVGR--LDQHRMRTGRL 278 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH--------cCCeEEEEeCC-CCHHHHHHHHHHhhcC--CCHHHHhcCCC
Confidence 4467778999999999997644333322222 34556776553 3456666666433222 222212 1222
Q ss_pred ChHHHH------HHhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 85 DMMQQT------LALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 85 ~~~~~~------~~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
+..... ..+. +..+.|. |+..+......... ....+++||||=.+.+.
T Consensus 279 ~~~e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 279 TDEDWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMS 337 (460)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhcc
Confidence 221111 1222 3456653 33344333322110 12357899999999765
No 403
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.11 Score=50.83 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=36.8
Q ss_pred CCEEEEC-chHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC
Q 015759 97 PHIVVAT-PGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 150 (401)
Q Consensus 97 ~~Iii~T-~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 150 (401)
..-.|+. |+++...+..... .--++.+||+|.|..+..++.-.+++..+.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~----~NPv~LLDEIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGV----KNPVFLLDEIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred cccccccCChHHHHHHHHhCC----cCCeEEeechhhccCCCCCChHHHHHhhcC
Confidence 3345554 9999888876442 123789999999999888888888887775
No 404
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.59 E-value=0.28 Score=50.18 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=16.5
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..++.+++.||+|+|||+.
T Consensus 210 ~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCceEEEECCCCCChHHH
Confidence 4568899999999999974
No 405
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.58 E-value=0.38 Score=43.61 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=23.0
Q ss_pred CccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 121 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
..++|++||+|.+.... ...+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46799999999774432 334555555555555454433
No 406
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.062 Score=42.38 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=58.9
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
..+++.+++|+|||+. +.-+.+.+... .-.-.=+++|- .+.-+...++++.-+..+.....-
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~-------g~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~la 67 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK-------GYKVGGFITPE----------VREGGKRIGFKIVDLATGEEGILA 67 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc-------CceeeeEEeee----------eecCCeEeeeEEEEccCCceEEEE
Confidence 5689999999999975 44455555432 11122344542 223344446666665544221110
Q ss_pred HHHhCCCCCEEEECchHHHHHHhcC----CCCCCCCccEEEEcchhhc--cccccHHHHHHHHHh
Q 015759 90 TLALGKRPHIVVATPGRLMDHLTNT----KGFSLGTLKYLVLDEADRL--LNDDFEKSLDEILNV 148 (401)
Q Consensus 90 ~~~~~~~~~Iii~T~~~l~~~~~~~----~~~~~~~~~~iIiDE~h~~--~~~~~~~~~~~i~~~ 148 (401)
.. .....-|+-+.-..+.+..- -.-.+..-|++|+||+--| ....|...+..++..
T Consensus 68 ~~---~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 68 RV---GFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred Ec---CCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 00 01122223332222222210 0002345789999999854 345677777777654
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.58 E-value=0.078 Score=52.80 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=36.5
Q ss_pred CccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 121 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
..-++|+|+.|.+.+......+..+++..|.+-..++.|=+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3458999999999999999999999999999887777776643
No 408
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.53 E-value=0.015 Score=56.87 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=81.5
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC----CChH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG----VDMM 87 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~----~~~~ 87 (401)
++|-...|.||--+..--+++..+. ..+++||+.-+..|--+..+.|+..+.. +|.+..+..- .+..
T Consensus 292 fLiGDGAGVGKGRTvAgiIfeNyLk--------GRKrAlW~SVSsDLKfDAERDL~DigA~-~I~V~alnK~KYakIss~ 362 (1300)
T KOG1513|consen 292 FLIGDGAGVGKGRTVAGIIFENYLK--------GRKRALWFSVSSDLKFDAERDLRDIGAT-GIAVHALNKFKYAKISSK 362 (1300)
T ss_pred eeeccCcccCCCceeEEEEehhhhc--------ccceeEEEEeccccccchhhchhhcCCC-Cccceehhhccccccccc
Confidence 5555455555543322224555554 6778999999999988877788877643 4555443210 0110
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCC-C--C---------CCCccEEEEcchhhccc---------cccHHHHHHHH
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKG-F--S---------LGTLKYLVLDEADRLLN---------DDFEKSLDEIL 146 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~--~---------~~~~~~iIiDE~h~~~~---------~~~~~~~~~i~ 146 (401)
+. .. -...|+++|+..|+.-...... + . -..=++|||||||...+ .-.+..+-.+-
T Consensus 363 en-~n--~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQ 439 (1300)
T KOG1513|consen 363 EN-TN--TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQ 439 (1300)
T ss_pred cc-CC--ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHH
Confidence 10 01 1245999999988654332111 0 0 01226899999996443 12356677777
Q ss_pred HhCCCCceEEEEeecC
Q 015759 147 NVIPRMRQTYLFSATM 162 (401)
Q Consensus 147 ~~~~~~~~~i~~SAT~ 162 (401)
..+|+.+ +++-|||=
T Consensus 440 k~LP~AR-VVYASATG 454 (1300)
T KOG1513|consen 440 KKLPNAR-VVYASATG 454 (1300)
T ss_pred HhCCCce-EEEeeccC
Confidence 8888755 89999994
No 409
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.34 Score=45.82 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=23.3
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 56 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 56 (401)
.++++.||+|||||..+.-.++. . .-+.+=+++|..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~-----S------~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALS-----S------DFPFVKIISPED 574 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhh-----c------CCCeEEEeChHH
Confidence 46899999999999753322221 1 445566777754
No 410
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.14 Score=51.19 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=75.3
Q ss_pred EEEcCCCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhc-CCceEeecCCCCHHHHHHHHhhccCCCceEEE
Q 015759 196 YRFVPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAGECNILI 272 (401)
Q Consensus 196 ~~~~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv 272 (401)
+..+..+.|.+....++... .+.++||.++.+.....+.+.++.. |.++.++|+++++.+|.....+...|+.+|+|
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVI 301 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVI 301 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEE
Confidence 44556677887777777644 6789999999998887777777654 88999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCEEEE
Q 015759 273 CTDVASRGLDIPSVDMVIN 291 (401)
Q Consensus 273 ~T~~~~~Gid~~~~~~vi~ 291 (401)
.|..+- -.-++++..+|.
T Consensus 302 GtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 302 GTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred Eechhh-cCchhhccEEEE
Confidence 998432 234556676664
No 411
>PRK05748 replicative DNA helicase; Provisional
Probab=94.49 E-value=0.26 Score=47.19 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=59.0
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|.-++|.|+||.|||...+- ++..+... .+..+++++.- .-..|+..++...... +....+..+.-
T Consensus 200 ~~~G~livIaarpg~GKT~~al~-ia~~~a~~-------~g~~v~~fSlE-ms~~~l~~R~l~~~~~--v~~~~i~~~~l 268 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALN-IAQNVATK-------TDKNVAIFSLE-MGAESLVMRMLCAEGN--IDAQRLRTGQL 268 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHH-HHHHHHHh-------CCCeEEEEeCC-CCHHHHHHHHHHHhcC--CCHHHhhcCCC
Confidence 45677789999999999976443 33332211 35557776653 3456777666432222 22211112221
Q ss_pred hHHHHH-------HhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 86 MMQQTL-------ALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 86 ~~~~~~-------~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
....+. .+. +..+.|. |++.+...+..... ....+++||||=.|.+.
T Consensus 269 ~~~e~~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 269 TDDDWPKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcC
Confidence 111211 122 3445553 33444433322111 11257899999999764
No 412
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.49 E-value=0.44 Score=49.31 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.5
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
..|+++.||+|+|||...
T Consensus 208 ~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVV 225 (852)
T ss_pred cCceeEECCCCCCHHHHH
Confidence 468999999999999753
No 413
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.48 E-value=0.034 Score=49.21 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=29.3
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
+..+.+++++||||||||... ..++..+.. ...+++++-.+.++
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~--------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPP--------EDERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHT--------TTSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchHH-HHHhhhccc--------cccceEEeccccce
Confidence 356899999999999999753 334444331 22567777766665
No 414
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.46 E-value=0.14 Score=52.36 Aligned_cols=59 Identities=25% Similarity=0.293 Sum_probs=43.0
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
...+++|.|.+|||||.+...-+.. ++... .....++|+++-|+..+.++.+++.++..
T Consensus 16 ~~g~~lV~AgaGSGKT~~l~~ria~-Li~~~----~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 16 TEGPLLIMAGAGSGKTRVLTHRIAH-LIAEK----NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHH-HHHcC----CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3467999999999999985544333 33211 11445799999999999999999987753
No 415
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.43 E-value=0.38 Score=50.65 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=33.6
Q ss_pred CccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 121 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
.--+||||++|.+.+......+..++...|....+++.|-+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999987666667788888888888887877776643
No 416
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.42 E-value=0.3 Score=50.71 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=16.1
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.|.++.||+|+|||...
T Consensus 193 ~~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCCceEEEcCCCCCHHHHH
Confidence 4478999999999999753
No 417
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.42 E-value=0.15 Score=49.88 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.4
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+..|+.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4478999999999986544
No 418
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.15 Score=50.30 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=15.8
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+..|++||.|+|||.++.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4588999999999987554
No 419
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.40 E-value=0.13 Score=53.23 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.3
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
...|+++.||+|+|||..+
T Consensus 199 ~~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIA 217 (821)
T ss_pred ccCCeEEECCCCCCHHHHH
Confidence 4568999999999999764
No 420
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.34 E-value=0.31 Score=44.99 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=24.4
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
.....++||||+|.+.... ...+-+.+...+....++++|..
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 3567899999999774433 33444444554444434444433
No 421
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.32 E-value=0.021 Score=46.80 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=28.0
Q ss_pred HhCCCCCEEEECchHHHHHHhcCCCC-CCCCccEEEEcchhhccc
Q 015759 92 ALGKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLN 135 (401)
Q Consensus 92 ~~~~~~~Iii~T~~~l~~~~~~~~~~-~~~~~~~iIiDE~h~~~~ 135 (401)
.....++|||+++..|++-....... ....-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 33346899999999886644332211 123457999999998755
No 422
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.31 E-value=0.17 Score=39.92 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=29.1
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
..+.+++++||.-.-++......+..++..+. . .+++++.-.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th~~~ 128 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSHDRY 128 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEECCHH
Confidence 44667999999998888776777777766653 2 4555554333
No 423
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.28 E-value=0.38 Score=44.97 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.6
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..++.+++.||+|+|||+.
T Consensus 177 ~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCceEEEECCCCCCHHHH
Confidence 3568899999999999985
No 424
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.25 E-value=0.4 Score=43.97 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=18.5
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
.+-.|+..+|.||+|+|||..
T Consensus 129 PiGkGQR~LIvG~pGtGKTTL 149 (380)
T PRK12608 129 PIGKGQRGLIVAPPRAGKTVL 149 (380)
T ss_pred ecCCCceEEEECCCCCCHHHH
Confidence 456899999999999999975
No 425
>PRK08006 replicative DNA helicase; Provisional
Probab=94.24 E-value=0.55 Score=45.03 Aligned_cols=116 Identities=16% Similarity=0.051 Sum_probs=59.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE-cCCC
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV-GGVD 85 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~-~~~~ 85 (401)
..|.=++|.|.||.|||..++-.+...... .+..+++++.- .-..|+..++-..... +....+. |..+
T Consensus 222 ~~G~LiiIaarPgmGKTafalnia~~~a~~--------~g~~V~~fSlE-M~~~ql~~Rlla~~~~--v~~~~i~~~~l~ 290 (471)
T PRK08006 222 QPSDLIIVAARPSMGKTTFAMNLCENAAML--------QDKPVLIFSLE-MPGEQIMMRMLASLSR--VDQTRIRTGQLD 290 (471)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEecc-CCHHHHHHHHHHHhcC--CCHHHhhcCCCC
Confidence 456668889999999997654433332222 35567777664 3456777666544322 2222222 2222
Q ss_pred hHHHH------HHhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 86 MMQQT------LALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 86 ~~~~~------~~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
..... ..+.....+.|- |+..+........ .....+++||||=.|.+.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF-REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHHcc
Confidence 22111 112123455554 3333333332211 012358899999999764
No 426
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.24 E-value=0.15 Score=46.84 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
.....++||||+|.|..... ..+-..+..-+....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~aa-naLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAA-NAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 35678999999998754433 34444555544444445554
No 427
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.19 E-value=0.13 Score=44.08 Aligned_cols=54 Identities=20% Similarity=0.132 Sum_probs=37.1
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
..|..+++.|++|+|||...+..+...+. .+..+++++... -..++.+.+..++
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~---------~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLK---------NGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---------CCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 35788999999999999764433333222 455678877654 5688888887764
No 428
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.18 E-value=0.19 Score=51.57 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
+|..+++.||+|+|||..
T Consensus 346 ~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSL 363 (775)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 456799999999999975
No 429
>PRK08840 replicative DNA helicase; Provisional
Probab=94.16 E-value=0.49 Score=45.26 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=58.7
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|.=+++.|.||.|||..++-.+...... .+..+++++.-- -..|+..++-..... +....+..+.-
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~--------~~~~v~~fSlEM-s~~ql~~Rlla~~s~--v~~~~i~~~~l 282 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMD--------QDKPVLIFSLEM-PAEQLMMRMLASLSR--VDQTKIRTGQL 282 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHh--------CCCeEEEEeccC-CHHHHHHHHHHhhCC--CCHHHHhcCCC
Confidence 3456668889999999997654333332221 355677776653 457777666544322 22222222221
Q ss_pred hHHHHH-------HhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 86 MMQQTL-------ALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 86 ~~~~~~-------~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
....+. .+.....+.|- |+..+......... ....+++||||=.|.+.
T Consensus 283 ~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 283 DDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcC
Confidence 111111 12123445553 22333332222110 12357899999999764
No 430
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.16 E-value=0.26 Score=49.48 Aligned_cols=50 Identities=28% Similarity=0.242 Sum_probs=38.8
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 72 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~ 72 (401)
+.++.|.+|+|||+.+.. ++ .. .+..+|||+|+...+.|+++.+..+...
T Consensus 34 ~~ll~Gl~gs~ka~lia~-l~----~~-------~~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 34 HQTLLGVTGSGKTFTMAN-VI----AR-------LQRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred cEEEEcCCCcHHHHHHHH-HH----HH-------hCCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 567999999999986322 22 21 3446999999999999999999988643
No 431
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.15 E-value=0.28 Score=47.55 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
.+++++.||+|+|||+.
T Consensus 88 ~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46799999999999974
No 432
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.14 Score=44.42 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=13.9
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
++++.||+|.|||..+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 5899999999999754
No 433
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.10 E-value=0.18 Score=46.06 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.9
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
.++++.||+|+|||..+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 57999999999999754
No 434
>PRK08506 replicative DNA helicase; Provisional
Probab=94.09 E-value=0.31 Score=46.84 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=60.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE-cCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV-GGV 84 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~-~~~ 84 (401)
+..|.=+++.|+||.|||...+-.+. .+.. .+..+++++.- .-..|+..++-..... +....+. |..
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~-~~~~--------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l 256 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMAL-KALN--------QDKGVAFFSLE-MPAEQLMLRMLSAKTS--IPLQNLRTGDL 256 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHH-HHHh--------cCCcEEEEeCc-CCHHHHHHHHHHHhcC--CCHHHHhcCCC
Confidence 34667788999999999976554333 3332 45567777664 4467777766543322 2221121 222
Q ss_pred ChHHH------HHHhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 85 DMMQQ------TLALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 85 ~~~~~------~~~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
+.... ...+. ...+.|- |++.+...+..... ....+++||||=.+.+.
T Consensus 257 ~~~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 257 DDDEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred CHHHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhcc
Confidence 21111 11122 2345553 33444433332111 12357899999999665
No 435
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.06 E-value=0.17 Score=52.46 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=64.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC-CCCCCCCCCCCCEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMVI 290 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~-~~~~Gid~~~~~~vi 290 (401)
.+.+++|.+||..-|.+.++.+++. ++.+..+++..+..++...++.+.+|+++|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 5678999999999999988877653 67788899999999999999999999999999998 444557777888877
Q ss_pred E
Q 015759 291 N 291 (401)
Q Consensus 291 ~ 291 (401)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 436
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.05 E-value=0.056 Score=43.88 Aligned_cols=28 Identities=18% Similarity=0.536 Sum_probs=18.2
Q ss_pred CCccEEEEcchhhc--cccccHHHHHHHHH
Q 015759 120 GTLKYLVLDEADRL--LNDDFEKSLDEILN 147 (401)
Q Consensus 120 ~~~~~iIiDE~h~~--~~~~~~~~~~~i~~ 147 (401)
..-+++|+||+-.| ....|.+.+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 46789999999865 34667788877777
No 437
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.05 E-value=0.04 Score=49.14 Aligned_cols=48 Identities=27% Similarity=0.207 Sum_probs=31.0
Q ss_pred cccccCC-ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHH
Q 015759 3 LWFCDAG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 60 (401)
Q Consensus 3 l~~~~~g-~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 60 (401)
||.+... .|++++|.||||||+. +..+..... ..-+++.+--|.+|..
T Consensus 166 L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~-----~~eRvItiEDtaELql 214 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTL-----LNALSGFID-----SDERVITIEDTAELQL 214 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCC-----CcccEEEEeehhhhcc
Confidence 4544444 5999999999999974 222222111 3447888888877733
No 438
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.14 Score=49.16 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=13.9
Q ss_pred EEEEcCCCcHHHHHHHH
Q 015759 12 LIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~ 28 (401)
.++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTtlAr~ 57 (486)
T PRK14953 41 YIFAGPRGTGKTTIARI 57 (486)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999976543
No 439
>PRK09165 replicative DNA helicase; Provisional
Probab=94.02 E-value=0.41 Score=46.34 Aligned_cols=124 Identities=16% Similarity=0.069 Sum_probs=60.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhh-c-----CCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAEN-Q-----RTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAV 79 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~-~-----~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~ 79 (401)
+..|.=++|.|+||.|||..++-.+.......... . ....+..+++++.- .-..|+..++....... ....
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v--~~~~ 290 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEI--SSSK 290 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCC--CHHH
Confidence 34566789999999999976544333322211000 0 00124567777654 34577777765543332 2222
Q ss_pred EEcCCChHHHHHHh------CCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 80 LVGGVDMMQQTLAL------GKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 80 ~~~~~~~~~~~~~~------~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
+..+.-....+..+ .....+.|- |++.+...+.... .-..+++||||=.|.+.
T Consensus 291 i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 291 IRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcc
Confidence 22222111111111 112445553 3344444333221 11347899999999664
No 440
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.00 E-value=0.36 Score=47.15 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=65.4
Q ss_pred hcCCCCEEEEecchHH----HHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-CCCCCCCCCCCE
Q 015759 214 EVSASSTMVFTRTCDA----TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-ASRGLDIPSVDM 288 (401)
Q Consensus 214 ~~~~~~~ivf~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-~~~Gid~~~~~~ 288 (401)
-..+.++.+-.+|.-- ...+.+.|...|+.+.++.|.+....|.++++...+|+++++|.|-+ +...+++.++-.
T Consensus 308 i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgL 387 (677)
T COG1200 308 IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL 387 (677)
T ss_pred HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeE
Confidence 3367889999999544 45566666777999999999999999999999999999999999995 556788888887
Q ss_pred EEE
Q 015759 289 VIN 291 (401)
Q Consensus 289 vi~ 291 (401)
||.
T Consensus 388 VIi 390 (677)
T COG1200 388 VII 390 (677)
T ss_pred EEE
Confidence 774
No 441
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.00 E-value=0.34 Score=52.77 Aligned_cols=50 Identities=20% Similarity=0.201 Sum_probs=31.9
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 63 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 63 (401)
++-++|.|..|+|||++. -.++..+..-.. ..+..++.++||-.-+..+.
T Consensus 852 dr~~~IqG~AGTGKTT~l-~~i~~~~~~l~e----~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 852 DRFTVVQGYAGVGKTTQF-RAVMSAVNMLPE----SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred CceEEEEeCCCCCHHHHH-HHHHHHHHHHhh----ccCceEEEEechHHHHHHHH
Confidence 467899999999999863 222322221100 04567889999987766654
No 442
>PRK05636 replicative DNA helicase; Provisional
Probab=94.00 E-value=0.35 Score=46.70 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=55.3
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..|.=+++.|.||.|||...+-.+...... .+..+++++.- .-..|+..++-..... +....+..+.-.
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~--------~g~~v~~fSlE-Ms~~ql~~R~ls~~s~--v~~~~i~~g~l~ 331 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIK--------HNKASVIFSLE-MSKSEIVMRLLSAEAE--VRLSDMRGGKMD 331 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEEee-CCHHHHHHHHHHHhcC--CCHHHHhcCCCC
Confidence 445667889999999997654333222222 34456666443 3345565555433222 222222222211
Q ss_pred HHHHHHh------CCCCCEEEE-Cc----hHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 87 MQQTLAL------GKRPHIVVA-TP----GRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 87 ~~~~~~~------~~~~~Iii~-T~----~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
...+..+ .....+.|- +| +.+........ .-..+++||||=.|.+.
T Consensus 332 ~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~--~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 332 EDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLK--QKHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 1111111 123456553 22 23322222211 11347899999999765
No 443
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.98 E-value=0.085 Score=34.51 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|...++.+|+|+|||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999974
No 444
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.97 E-value=0.028 Score=52.63 Aligned_cols=49 Identities=35% Similarity=0.313 Sum_probs=38.0
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
++++.||||+|||..+++|.+.. ....++|.=|.-++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~-----------~~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT-----------WPGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc-----------CCCCEEEEccchhHHHHHHHHHHHcC
Confidence 47899999999999988776643 23458899999999887776666543
No 445
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.89 E-value=0.12 Score=49.97 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=40.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
+..|+.++|.||+|+|||+..+..+.+.+.. .+..+++++-. +-..++.+.+..++-
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~--------~ge~~lyvs~e-E~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH--------FDEPGVFVTFE-ESPQDIIKNARSFGW 74 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEEEEe-cCHHHHHHHHHHcCC
Confidence 3468899999999999998755444443332 24568888754 666788888887754
No 446
>PHA00012 I assembly protein
Probab=93.88 E-value=2.1 Score=38.45 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=29.9
Q ss_pred CCCCccEEEEcchhhccc-cccH----HHHHH-HHHhCCCCceEEEEeecCchHHHHHHH
Q 015759 118 SLGTLKYLVLDEADRLLN-DDFE----KSLDE-ILNVIPRMRQTYLFSATMTKKVKKLQR 171 (401)
Q Consensus 118 ~~~~~~~iIiDE~h~~~~-~~~~----~~~~~-i~~~~~~~~~~i~~SAT~~~~~~~~~~ 171 (401)
+...-.++|+||||..+. ..++ ..+.. +........-++++|-.+. .+....+
T Consensus 78 dep~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps-~VDs~IR 136 (361)
T PHA00012 78 DESKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS-IMDKQAR 136 (361)
T ss_pred CCCCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH-HHhHHHH
Confidence 345667999999998765 2222 32444 3333444455666666653 4444443
No 447
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.86 E-value=0.18 Score=41.48 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=44.4
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHHHHHHHH
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRA 172 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 172 (401)
..+.+++|+||.-.-++-.....+..++..+......+.||...-++++.+++.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 467789999999988887778888888888887777899999887777776654
No 448
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.86 E-value=0.044 Score=52.81 Aligned_cols=50 Identities=28% Similarity=0.309 Sum_probs=39.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
.++++.||||||||..+++|.+-. ....++|.=|-.+|.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~-----------~~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN-----------YPGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh-----------ccCCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999998886632 22258888999999888877777665
No 449
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=93.83 E-value=0.034 Score=59.52 Aligned_cols=99 Identities=25% Similarity=0.488 Sum_probs=77.6
Q ss_pred hcCCCCEEEEecchHHHHHHHHHHHhcCC-ceEeecCCCC-----------HHHHHHHHhhccCCCceEEEEcCCCCCCC
Q 015759 214 EVSASSTMVFTRTCDATRLLALMLRNLGQ-RAIPISGHMS-----------QSKRLGALNKFKAGECNILICTDVASRGL 281 (401)
Q Consensus 214 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vLv~T~~~~~Gi 281 (401)
+...-..++|++....+..+.+.+++... .+..+.|.+. ...+.+++..|...++.+|++|.++.+|+
T Consensus 289 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~ 368 (1606)
T KOG0701|consen 289 KIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGV 368 (1606)
T ss_pred hhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhc
Confidence 33445678999999999888888877532 2222333321 11346788899999999999999999999
Q ss_pred CCCCCCEEEEecCCCChhHHHHHhhhcccCC
Q 015759 282 DIPSVDMVINYDIPTNSKDYIHRVGRTARAG 312 (401)
Q Consensus 282 d~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g 312 (401)
|++.++.++.++.|.....|+|..||+.+..
T Consensus 369 d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 369 DVPKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred chhhhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999999986653
No 450
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=93.82 E-value=0.14 Score=50.67 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=25.4
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEE
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYL 157 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 157 (401)
+.+..++|+||+..-+|..-...+...+..+.+.+.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 455678999999988886666666666554444443333
No 451
>PRK05595 replicative DNA helicase; Provisional
Probab=93.81 E-value=0.35 Score=46.19 Aligned_cols=54 Identities=17% Similarity=0.022 Sum_probs=33.6
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
..|.=++|.|.||.|||...+-.+...... .+..+++++.-- -..|+..++...
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~--------~g~~vl~fSlEm-s~~~l~~R~~a~ 252 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALR--------EGKSVAIFSLEM-SKEQLAYKLLCS 252 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHH--------cCCcEEEEecCC-CHHHHHHHHHHH
Confidence 456667889999999997644433222222 455677776643 456666665544
No 452
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.75 E-value=0.49 Score=40.84 Aligned_cols=97 Identities=15% Similarity=0.250 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCC----ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhh
Q 015759 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE----CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVG 306 (401)
Q Consensus 231 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~----~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~G 306 (401)
..+...+.. ++.+..++++.+.+. -.|.++. ..|+|+=+.+++|+.++++.+.++...+...+++.|+.
T Consensus 101 ~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qmg- 173 (239)
T PF10593_consen 101 PELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMG- 173 (239)
T ss_pred HHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHh-
Confidence 334444444 678888887665433 3444443 67999999999999999999999999999888888873
Q ss_pred h--cccCCCCceEEEEeccccHHHHHHHHH
Q 015759 307 R--TARAGRTGVAISLVNQYELEWYLQIEK 334 (401)
Q Consensus 307 R--~~R~g~~g~~i~~~~~~~~~~~~~~~~ 334 (401)
| ..|.|-...|-++.+++-...+..+.+
T Consensus 174 RwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 174 RWFGYRPGYEDLCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred hcccCCcccccceEEecCHHHHHHHHHHHH
Confidence 4 235555567777777776666666544
No 453
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.45 Score=45.87 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCCccEEEEcchhhcccc-------ccHHHHHHHHHhC---CCCceEEEEeecCchHH
Q 015759 119 LGTLKYLVLDEADRLLND-------DFEKSLDEILNVI---PRMRQTYLFSATMTKKV 166 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~-------~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~ 166 (401)
.+..++|.|||+|.+... .-...+..++..+ .....+..+.||..+++
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 345678999999976541 1223445554443 34456888999976543
No 454
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.6 Score=41.46 Aligned_cols=73 Identities=14% Similarity=0.059 Sum_probs=39.7
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH-----------HHHHHHHHHHhccCCCc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL-----------AIQISEQFEALGSGISL 75 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L-----------~~q~~~~l~~~~~~~~i 75 (401)
.-++=+++.||+|+|||. .+-++.+.+.-.. ........+|=...-+| +.++.+.++++....+.
T Consensus 175 t~NRliLlhGPPGTGKTS-LCKaLaQkLSIR~---~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTS-LCKALAQKLSIRT---NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeeeEEEEeCCCCCChhH-HHHHHHHhheeee---cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 345668999999999996 2443333332111 11133334554454444 45555556666555555
Q ss_pred eEEEEEcC
Q 015759 76 RCAVLVGG 83 (401)
Q Consensus 76 ~~~~~~~~ 83 (401)
-+.++...
T Consensus 251 lVfvLIDE 258 (423)
T KOG0744|consen 251 LVFVLIDE 258 (423)
T ss_pred EEEEEeHH
Confidence 56665543
No 455
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.68 E-value=0.2 Score=47.80 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.5
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+|+.||+|+|||.++..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4588999999999986543
No 456
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.64 E-value=0.48 Score=49.16 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
...|+++.||+|+|||...
T Consensus 198 ~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CcCceEEECCCCCCHHHHH
Confidence 3468999999999999753
No 457
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.58 E-value=0.095 Score=48.31 Aligned_cols=27 Identities=33% Similarity=0.178 Sum_probs=19.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
.+..++++||||||||+. +..++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 455789999999999975 444555554
No 458
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.55 E-value=0.063 Score=52.76 Aligned_cols=52 Identities=27% Similarity=0.112 Sum_probs=42.2
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
..+++++.||||||||..+++|.+... +.-++|+=|--++........++.+
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~~-----------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLFW-----------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHhC-----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 346899999999999999999887653 2348889999999888887777764
No 459
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.55 E-value=0.9 Score=36.84 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=61.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH-HHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE-LAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
+.|.--.|=|||.+++--++..+- .+.+|+++-=.+. -..-=...+..+. ++.....-.+.......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G---------~G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAG---------HGMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHC---------TT--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh---------CCCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCcccccCCC
Confidence 455566899999987765665554 6778888866554 1111122233322 23332221111110000
Q ss_pred HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH--HHHHHHHHhCCCCceEEEEeecCchHHHH
Q 015759 91 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKK 168 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 168 (401)
.. .+ .......++..... +.-..+++||+||+-...+.++- ..+..++...|...-+|+..-.+|+.+.+
T Consensus 74 ~~----~~--~~~~~~~~~~a~~~--i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e 145 (172)
T PF02572_consen 74 EE----ED--RAAAREGLEEAKEA--ISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIE 145 (172)
T ss_dssp HH----HH--HHHHHHHHHHHHHH--TT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHH
T ss_pred cH----HH--HHHHHHHHHHHHHH--HhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHH
Confidence 00 00 00111122222211 23457899999999977776553 45667777767666565555556666666
Q ss_pred HHHH
Q 015759 169 LQRA 172 (401)
Q Consensus 169 ~~~~ 172 (401)
.++.
T Consensus 146 ~ADl 149 (172)
T PF02572_consen 146 AADL 149 (172)
T ss_dssp H-SE
T ss_pred hCCe
Confidence 5443
No 460
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=93.46 E-value=0.13 Score=48.00 Aligned_cols=53 Identities=23% Similarity=0.239 Sum_probs=34.1
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHH
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 64 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 64 (401)
||.-...+++++.|.||||||.+ +..++..+.. .+.+++|.=|.-+.....++
T Consensus 9 l~~~~e~~~~li~G~~GsGKT~~-i~~ll~~~~~--------~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 9 LPKDSENRHILIIGATGSGKTQA-IRHLLDQIRA--------RGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp E-GGGGGG-EEEEE-TTSSHHHH-HHHHHHHHHH--------TT-EEEEEEETTHHHHHH--
T ss_pred cccchhhCcEEEECCCCCCHHHH-HHHHHHHHHH--------cCCEEEEEECCchHHHHhcC
Confidence 35556779999999999999974 5556666654 55667888887776544333
No 461
>PRK06321 replicative DNA helicase; Provisional
Probab=93.42 E-value=0.86 Score=43.69 Aligned_cols=114 Identities=13% Similarity=0.078 Sum_probs=58.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE-cCCC
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV-GGVD 85 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~-~~~~ 85 (401)
..|.=++|.|.||.|||...+- +...+... .+..+++++.- .-..|+..++-..... +....+. +..+
T Consensus 224 ~~G~LiiiaarPgmGKTafal~-ia~~~a~~-------~g~~v~~fSLE-Ms~~ql~~Rlla~~s~--v~~~~i~~~~l~ 292 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALN-IAENFCFQ-------NRLPVGIFSLE-MTVDQLIHRIICSRSE--VESKKISVGDLS 292 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHH-HHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHhhcC--CCHHHhhcCCCC
Confidence 3455578899999999976443 33333211 34556776553 3456777666543222 2222222 2222
Q ss_pred hHHHH------HHhCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 86 MMQQT------LALGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 86 ~~~~~------~~~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
..... ..+. ...+.|- |.+.+...+.... .-..+++||||=.+.+.
T Consensus 293 ~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~--~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 293 GRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMK--ESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHHcC
Confidence 21111 1222 3456554 3344444333321 12347899999999764
No 462
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.43 Score=45.27 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=29.6
Q ss_pred CCccEEEEcchhhcccc-------ccHHHHHHHHHhC---CCCceEEEEeecCchH
Q 015759 120 GTLKYLVLDEADRLLND-------DFEKSLDEILNVI---PRMRQTYLFSATMTKK 165 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~-------~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~ 165 (401)
...++|.|||.|.+... .....+.+++..+ .++.-+|.+.||..++
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 34678999999976552 1233455555443 3445699999997553
No 463
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.39 E-value=0.52 Score=43.79 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.5
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+.+++.||+|+|||..+
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999754
No 464
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.39 E-value=0.57 Score=51.72 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=31.9
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 63 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 63 (401)
.+-++|.|..|+|||++ +-.++..+.... ...+..++.++||-.-+.++.
T Consensus 984 dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~----~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 984 DRFTVVQGYAGVGKTTQ-FRAVMSAVNTLP----ESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHhh----cccCceEEEECCcHHHHHHHH
Confidence 35689999999999975 333333332110 013567889999987766543
No 465
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.39 E-value=0.082 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=17.1
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
+++.||||||||++ +..++..+.
T Consensus 261 iLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 261 ILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred EEEeCCCCCCHHHH-HHHHHHHhc
Confidence 67889999999987 444555544
No 466
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.37 E-value=0.39 Score=49.13 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.4
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+++.||+|+|||+.
T Consensus 486 ~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 346799999999999974
No 467
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.37 E-value=0.62 Score=37.92 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=71.6
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH-HHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-SEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
++|.--.|=|||++++--++..+- .+.++.|+-=.+--...= ...+..++ ..+....+..+.....+.
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~G---------hG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~~ 99 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALG---------HGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQD 99 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhc---------CCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCcC
Confidence 556677888999987766665554 666777764333211111 12223321 112222221111111110
Q ss_pred HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH--HHHHHHHHhCCCCceEEEEeecCchHHHH
Q 015759 91 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTKKVKK 168 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 168 (401)
. ..++ ..+...+..... .+.-..+++||+||.--.+..++- +.+..++...|....+|+..-..++.+.+
T Consensus 100 ~----~~d~--~aa~~~w~~a~~--~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 100 R----EADI--AAAKAGWEHAKE--ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred c----HHHH--HHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 0 0112 222222222221 112346899999999977775553 45666677666666555544446777777
Q ss_pred HHHHh
Q 015759 169 LQRAC 173 (401)
Q Consensus 169 ~~~~~ 173 (401)
.+...
T Consensus 172 ~ADlV 176 (198)
T COG2109 172 LADLV 176 (198)
T ss_pred HHHHH
Confidence 66654
No 468
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.32 E-value=0.25 Score=42.35 Aligned_cols=47 Identities=19% Similarity=0.016 Sum_probs=27.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 56 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 56 (401)
..|+-+.+.||+|+|||...+..+...+... . -......++++....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~-~--~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPG-E--LGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhccc-c--cCCCcceEEEEecCC
Confidence 4578899999999999986544333322210 0 000125677877654
No 469
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.30 E-value=0.13 Score=43.20 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=15.8
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQAL 34 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~ 34 (401)
++++||||||||+.. ..++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 689999999999863 3344433
No 470
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.29 E-value=1.1 Score=40.11 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
++.++++.||-|||||..
T Consensus 48 EsnsviiigprgsgkT~l 65 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTIL 65 (408)
T ss_pred CCCceEEEccCCCCceEe
Confidence 457899999999999963
No 471
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.24 E-value=0.079 Score=47.84 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=17.7
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.++++.||||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 45789999999999999974
No 472
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=93.21 E-value=0.11 Score=49.00 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=34.5
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 61 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 61 (401)
|.-...+++++.|+||+|||.. +..++..+.. .+.+++|+=|..++...
T Consensus 37 ~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~--------~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA--------RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh--------cCCCEEEEeCCcchhHh
Confidence 3344568999999999999975 4444555443 45568888898876543
No 473
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.16 E-value=0.32 Score=42.82 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.5
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
+++++.+|+|+|||+.
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 6899999999999974
No 474
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.12 E-value=5 Score=38.75 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=55.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 275 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~ 275 (401)
.++.+||.+|+++-+....+.|...|+.+..++++.+..++..++.....++.+++++|+
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 467899999999999999999999999999999999999999999999999999999998
No 475
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.12 E-value=0.44 Score=40.76 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.8
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
++.++|.||.|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 47799999999999973
No 476
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=0.68 Score=42.11 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=24.8
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
....+++||||+|.|.... ...+-+.+..-|... +++++++-+
T Consensus 104 ~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~-~fiL~t~~~ 146 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDT-VLLLISHQP 146 (328)
T ss_pred cCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCe-EEEEEECCh
Confidence 3467899999999875543 333444455544444 444444433
No 477
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.03 E-value=4.2 Score=41.21 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=64.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcC-------CceEeecCCCCHHHHHHHHhhccC--------CCceEEEEcCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLG-------QRAIPISGHMSQSKRLGALNKFKA--------GECNILICTDVASRG 280 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~--------~~~~vLv~T~~~~~G 280 (401)
-....|+|+++....+.+....+..+ ..-..+-.. +..+-.+++.+|.+ |-.-+.|+-...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 34559999999877766654444321 111111111 23333445555543 333566788899999
Q ss_pred CCCCC--CCEEEEecCCCCh--------------------------------------hHHHHHhhhcccCCCCceEEEE
Q 015759 281 LDIPS--VDMVINYDIPTNS--------------------------------------KDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 281 id~~~--~~~vi~~~~p~s~--------------------------------------~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
+|+.+ .+.||..+.|..+ ..+-|.+||+-|.-++--++.+
T Consensus 639 lDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l 718 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVIL 718 (945)
T ss_pred CCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeE
Confidence 99976 5688888887421 0224899999997766444446
Q ss_pred ecc
Q 015759 321 VNQ 323 (401)
Q Consensus 321 ~~~ 323 (401)
++.
T Consensus 719 ~D~ 721 (945)
T KOG1132|consen 719 CDD 721 (945)
T ss_pred eec
Confidence 654
No 478
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.01 E-value=0.058 Score=44.87 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=15.7
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
+++.++++++.||+|+|||..
T Consensus 18 AAaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 18 AAAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHCC--EEEES-CCCTHHHH
T ss_pred HHcCCCCeEEECCCCCCHHHH
Confidence 566889999999999999974
No 479
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.96 E-value=0.078 Score=47.80 Aligned_cols=44 Identities=30% Similarity=0.252 Sum_probs=30.4
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
++..+++++++|+||||||.. +.+++..+- ...+++.+--+.++
T Consensus 139 ~ie~~~siii~G~t~sGKTt~-lnall~~Ip---------~~~rivtIEdt~E~ 182 (312)
T COG0630 139 AIEARKSIIICGGTASGKTTL-LNALLDFIP---------PEERIVTIEDTPEL 182 (312)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHHhCC---------chhcEEEEeccccc
Confidence 456789999999999999974 444444432 44556666666654
No 480
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.95 E-value=0.15 Score=43.71 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=23.8
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 54 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 54 (401)
=++++.|++|||||.. +..++..+.+ .-..+++++|
T Consensus 14 fr~viIG~sGSGKT~l-i~~lL~~~~~--------~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTL-IKSLLYYLRH--------KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHhhcc--------cCCEEEEEec
Confidence 4799999999999974 4444433322 2345667777
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.92 E-value=0.15 Score=46.85 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
.+..++++||||||||+.. ..++..+... ...+++.+-...++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~-------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN-------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC-------CCCEEEEEcCChhh
Confidence 4678999999999999853 3344333211 23456665554444
No 482
>PF12846 AAA_10: AAA-like domain
Probab=92.92 E-value=0.19 Score=45.15 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=30.0
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 60 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 60 (401)
.++++.|+||+|||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~--------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR--------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH--------cCCCEEEEcCCchHHH
Confidence 578999999999998755 45555544 5667888877655433
No 483
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.87 E-value=0.12 Score=50.73 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=59.7
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHH-HHHHHhccCCC-ceEEEEEc----C
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS-EQFEALGSGIS-LRCAVLVG----G 83 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~-~~l~~~~~~~~-i~~~~~~~----~ 83 (401)
+.+.+..++-+|||.+.+. ++...+.. ....+|++.||..+++++. .++..+....+ ++ ..+.. .
T Consensus 34 ~~Vv~~k~aQ~GkT~~~~n-~~g~~i~~-------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~-~~~~~~~~~~ 104 (557)
T PF05876_consen 34 REVVVMKSAQVGKTELLLN-WIGYSIDQ-------DPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLR-RKLSPSKSRD 104 (557)
T ss_pred cEEEEEEcchhhHhHHHHh-hceEEEEe-------CCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHH-HHhCchhhcc
Confidence 5789999999999996443 33222222 3345899999999999986 55665543321 11 01111 0
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
.........+. +..+.++...+ -..+.-..++++++||++...
T Consensus 105 ~~~t~~~k~f~-gg~l~~~ga~S-------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 105 SGNTILYKRFP-GGFLYLVGANS-------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred cCCchhheecC-CCEEEEEeCCC-------CcccccCCcCEEEEechhhcc
Confidence 00011111111 33454444221 122344568899999999874
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.86 E-value=0.066 Score=44.41 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.3
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
.+..|+++++.||||||||..
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHH
Confidence 456789999999999999975
No 485
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.86 E-value=0.96 Score=41.11 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=26.0
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
...+++|+|++|.+.. .....+..++...+.... ++++++-+
T Consensus 112 ~~~kV~iiEp~~~Ld~-~a~naLLk~LEep~~~~~-~Ilvth~~ 153 (325)
T PRK08699 112 GGLRVILIHPAESMNL-QAANSLLKVLEEPPPQVV-FLLVSHAA 153 (325)
T ss_pred CCceEEEEechhhCCH-HHHHHHHHHHHhCcCCCE-EEEEeCCh
Confidence 5678999999996644 445555556666655443 44444433
No 486
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.82 E-value=0.25 Score=53.22 Aligned_cols=104 Identities=19% Similarity=0.139 Sum_probs=64.3
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCC-ceE------
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS-LRC------ 77 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~-i~~------ 77 (401)
++...++++|.|+.|||||.+...-++..+.... ....+++++-|+.-+.++.+++.+...... ..-
T Consensus 6 A~dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~~------~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~~~~~~l~~~ 79 (1141)
T TIGR02784 6 ASDPKTSAWVSANAGSGKTHVLTQRVIRLLLNGV------PPSKILCLTYTKAAAAEMQNRVFDRLGEWAVLDDAELRAR 79 (1141)
T ss_pred hcCCCCCEEEEEECCCCHHHHHHHHHHHHHHcCC------CCCeEEEEecCHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 4556789999999999999986665555544322 456799999999999998887776543210 000
Q ss_pred -EEEEcCCC----h----HHHHHHhCCCCCEEEECchHHHHHHhcC
Q 015759 78 -AVLVGGVD----M----MQQTLALGKRPHIVVATPGRLMDHLTNT 114 (401)
Q Consensus 78 -~~~~~~~~----~----~~~~~~~~~~~~Iii~T~~~l~~~~~~~ 114 (401)
..+.|... . ......+.....+-|.|.+.|...+.+.
T Consensus 80 l~~~~~~~~~~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r~ 125 (1141)
T TIGR02784 80 LEALEGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCESLLHQ 125 (1141)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHHH
Confidence 00011100 0 0111233345568899999998777653
No 487
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.81 E-value=0.15 Score=46.83 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=19.9
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
.+..++++||||||||+. +..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 567899999999999985 343444443
No 488
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.77 E-value=0.16 Score=41.80 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=27.5
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCC-ceEEEEee
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSA 160 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~-~~~i~~SA 160 (401)
.+.+++++||....++......+..++..+.+. .++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 467899999999888877666666665554333 45555443
No 489
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=92.74 E-value=0.2 Score=42.40 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=26.6
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 55 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 55 (401)
..|+-+.+.||+|+|||...+..+... .. .+.+++++.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~-~~--------~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA-AR--------QGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-Hh--------CCCeEEEEECC
Confidence 356789999999999998654433322 21 34567777664
No 490
>PHA02542 41 41 helicase; Provisional
Probab=92.73 E-value=0.52 Score=45.13 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=31.9
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
..|.=+++.|+||.|||..++-.+... .. .+..++++.-- .-..|+..++..
T Consensus 188 ~~G~LiiIaarPgmGKTtfalniA~~~-a~--------~g~~Vl~fSLE-M~~~ql~~Rl~a 239 (473)
T PHA02542 188 ERKTLNVLLAGVNVGKSLGLCSLAADY-LQ--------QGYNVLYISME-MAEEVIAKRIDA 239 (473)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHHHHH-Hh--------cCCcEEEEecc-CCHHHHHHHHHH
Confidence 345668889999999998655433333 22 45557776542 234566666643
No 491
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.70 E-value=0.89 Score=41.08 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
....+++|||++|.|.... ...+-+++..-|....++++|.
T Consensus 111 ~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred cCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEEC
Confidence 3467899999999874433 3344445565555554555443
No 492
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.69 E-value=0.38 Score=39.46 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=29.6
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCc-eEEEEeecCchH
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR-QTYLFSATMTKK 165 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~-~~i~~SAT~~~~ 165 (401)
..+.+++++||--.-++......+..++..+.... ..+++++.-...
T Consensus 87 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 87 LRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 34567999999998888766666666655543221 355566554443
No 493
>PRK07773 replicative DNA helicase; Validated
Probab=92.60 E-value=0.57 Score=48.87 Aligned_cols=116 Identities=13% Similarity=0.030 Sum_probs=59.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+..|.=++|.|++|+|||...+-.+...+.. .+..+++++- -.-..|+..++....... ....+..+.-
T Consensus 214 l~~G~livIagrPg~GKT~fal~ia~~~a~~--------~~~~V~~fSl-Ems~~ql~~R~~s~~~~i--~~~~i~~g~l 282 (886)
T PRK07773 214 LHPGQLIIVAARPSMGKTTFGLDFARNCAIR--------HRLAVAIFSL-EMSKEQLVMRLLSAEAKI--KLSDMRSGRM 282 (886)
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh--------cCCeEEEEec-CCCHHHHHHHHHHHhcCC--CHHHHhcCCC
Confidence 3456668999999999997654433333222 3445666664 334567777766543332 2111222211
Q ss_pred hHHHHHH------hCCCCCEEEE-----CchHHHHHHhcCCCCCCCCccEEEEcchhhcc
Q 015759 86 MMQQTLA------LGKRPHIVVA-----TPGRLMDHLTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 86 ~~~~~~~------~~~~~~Iii~-----T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
....+.. ......+.|. |++.+...+.... .-..+++||||=.+.+.
T Consensus 283 ~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~--~~~~~~lvvIDyLql~~ 340 (886)
T PRK07773 283 SDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLR--QEANLGLIVVDYLQLMT 340 (886)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchhhcC
Confidence 1111111 1123455553 3444433332211 11357899999999764
No 494
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.59 E-value=0.64 Score=46.09 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
++-+++.||+|+|||.++
T Consensus 110 ~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTI 127 (637)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 445999999999999854
No 495
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.59 E-value=0.41 Score=51.07 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=62.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-CCCCCCCCCCCEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-ASRGLDIPSVDMVI 290 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-~~~Gid~~~~~~vi 290 (401)
.+.+++|.+||+.-|.+.++.+++. ++.+..+++..+..++..+++...+|.++|+|+|.. +...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 5788999999999999998887753 467788999999999999999999999999999983 44446666777776
Q ss_pred E
Q 015759 291 N 291 (401)
Q Consensus 291 ~ 291 (401)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 496
>PRK13764 ATPase; Provisional
Probab=92.55 E-value=0.18 Score=49.33 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=20.3
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQAL 34 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~ 34 (401)
..+++++++||||||||+. +..++..+
T Consensus 255 ~~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred hcCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 3578899999999999975 44455444
No 497
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.53 E-value=0.3 Score=44.05 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=31.6
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ 61 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 61 (401)
..|+-+.+.+|+|+|||...+..+.. ... .+..++++.+...+-.+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~-~~~--------~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE-AQK--------LGGTVAFIDAEHALDPV 98 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHH--------cCCCEEEECccccHHHH
Confidence 34678899999999999765443333 222 45678888887666543
No 498
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.068 Score=49.84 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.9
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
+++.|+|+++.||+|||||..
T Consensus 194 AAAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 194 AAAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred HHhcCCcEEEecCCCCchHHh
Confidence 677899999999999999963
No 499
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=1 Score=43.79 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=26.9
Q ss_pred CccEEEEcchhhcccccc-------HHHHHHHHHhC---CCCceEEEEeecCch
Q 015759 121 TLKYLVLDEADRLLNDDF-------EKSLDEILNVI---PRMRQTYLFSATMTK 164 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~~~-------~~~~~~i~~~~---~~~~~~i~~SAT~~~ 164 (401)
...+|.+||+|.+....- ...+..++..+ .....++.+-||..+
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p 388 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRP 388 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCc
Confidence 356899999997765211 24555555444 344456777777644
No 500
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.43 E-value=2.1 Score=39.86 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=74.3
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEc-CcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS-PTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~-P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
.-++.+|=-|||||++..- +..++.. .+.++++++ -+.- .--++.|+.++...++.+.....+.+. .
T Consensus 101 ~vImmvGLQGsGKTTt~~K-LA~~lkk--------~~~kvllVaaD~~R--pAA~eQL~~La~q~~v~~f~~~~~~~P-v 168 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGK-LAKYLKK--------KGKKVLLVAADTYR--PAAIEQLKQLAEQVGVPFFGSGTEKDP-V 168 (451)
T ss_pred eEEEEEeccCCChHhHHHH-HHHHHHH--------cCCceEEEecccCC--hHHHHHHHHHHHHcCCceecCCCCCCH-H
Confidence 4478889999999987543 3333332 344455544 3321 112344555554445555443111111 1
Q ss_pred HHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhc-cccccHHHHHHHHHhCCCCceEEEEeecCchHHH
Q 015759 89 QTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDDFEKSLDEILNVIPRMRQTYLFSATMTKKVK 167 (401)
Q Consensus 89 ~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 167 (401)
. | ..+.+.. +.-..++++|+|=|-++ .+...-..+..|...+.+..-++.+-|+.-....
T Consensus 169 ~-----------I-----ak~al~~---ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~ 229 (451)
T COG0541 169 E-----------I-----AKAALEK---AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAV 229 (451)
T ss_pred H-----------H-----HHHHHHH---HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHH
Confidence 0 0 0111221 12335789999988865 3456677788888888877777788888766555
Q ss_pred HHHHHh
Q 015759 168 KLQRAC 173 (401)
Q Consensus 168 ~~~~~~ 173 (401)
.....+
T Consensus 230 ~~A~aF 235 (451)
T COG0541 230 NTAKAF 235 (451)
T ss_pred HHHHHH
Confidence 554444
Done!