Query 015759
Match_columns 401
No_of_seqs 225 out of 2624
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.1E-57 3.8E-62 430.4 36.4 340 3-345 87-429 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1E-55 3.4E-60 415.9 32.7 338 3-347 68-406 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 8.3E-55 2.8E-59 410.7 34.4 343 2-345 45-404 (417)
4 1s2m_A Putative ATP-dependent 100.0 6.7E-54 2.3E-58 402.2 36.7 337 3-347 52-388 (400)
5 3eiq_A Eukaryotic initiation f 100.0 7.8E-55 2.7E-59 410.5 30.1 341 3-350 71-413 (414)
6 1xti_A Probable ATP-dependent 100.0 1.2E-52 4.2E-57 392.5 36.0 337 3-346 39-380 (391)
7 3fht_A ATP-dependent RNA helic 100.0 2.2E-52 7.6E-57 393.4 33.0 337 3-348 56-404 (412)
8 1hv8_A Putative ATP-dependent 100.0 2E-51 6.7E-56 381.0 35.1 329 3-345 37-366 (367)
9 1fuu_A Yeast initiation factor 100.0 5.1E-54 1.8E-58 402.3 16.9 338 3-348 52-390 (394)
10 3pey_A ATP-dependent RNA helic 100.0 2.5E-51 8.7E-56 384.1 33.1 334 3-347 36-381 (395)
11 3sqw_A ATP-dependent RNA helic 100.0 6.1E-51 2.1E-55 398.4 32.7 338 3-342 52-416 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 1.4E-50 4.9E-55 395.6 33.0 339 3-343 103-468 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 3.9E-53 1.3E-57 405.6 14.2 336 3-347 123-470 (479)
14 2z0m_A 337AA long hypothetical 100.0 5.1E-50 1.7E-54 367.2 31.5 312 3-338 25-336 (337)
15 3fho_A ATP-dependent RNA helic 100.0 1.5E-50 5.1E-55 388.8 21.3 335 3-348 150-495 (508)
16 3oiy_A Reverse gyrase helicase 100.0 6.6E-50 2.3E-54 376.4 23.0 334 2-364 29-405 (414)
17 2v1x_A ATP-dependent DNA helic 100.0 1.4E-47 4.8E-52 371.5 28.5 307 2-330 52-380 (591)
18 1oyw_A RECQ helicase, ATP-depe 100.0 9.7E-47 3.3E-51 362.2 30.3 309 2-333 33-352 (523)
19 4a2p_A RIG-I, retinoic acid in 100.0 3.3E-45 1.1E-49 357.7 25.2 318 3-328 16-512 (556)
20 3tbk_A RIG-I helicase domain; 100.0 1.6E-45 5.4E-50 359.9 21.5 322 3-332 13-515 (555)
21 4ddu_A Reverse gyrase; topoiso 100.0 2.5E-45 8.5E-50 376.9 23.8 331 2-359 86-527 (1104)
22 2ykg_A Probable ATP-dependent 100.0 1.4E-45 4.9E-50 369.2 19.6 338 2-345 21-541 (696)
23 1wp9_A ATP-dependent RNA helic 100.0 1.7E-43 5.7E-48 340.2 30.0 313 3-327 18-478 (494)
24 3l9o_A ATP-dependent RNA helic 100.0 5.9E-44 2E-48 366.8 27.4 308 2-332 192-606 (1108)
25 4a2q_A RIG-I, retinoic acid in 100.0 6.4E-44 2.2E-48 360.5 26.5 319 3-327 257-752 (797)
26 2xgj_A ATP-dependent RNA helic 100.0 1.2E-42 4E-47 354.3 32.2 307 3-332 95-508 (1010)
27 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-44 3.9E-49 372.3 17.3 309 2-338 64-468 (1054)
28 1tf5_A Preprotein translocase 100.0 3.2E-42 1.1E-46 334.4 29.5 308 3-325 92-546 (844)
29 2zj8_A DNA helicase, putative 100.0 1.3E-42 4.4E-47 347.7 27.3 319 3-344 32-405 (720)
30 2p6r_A Afuhel308 helicase; pro 100.0 6.1E-42 2.1E-46 341.9 30.4 301 3-325 34-389 (702)
31 2va8_A SSO2462, SKI2-type heli 100.0 8.6E-42 2.9E-46 341.9 31.5 301 6-325 43-409 (715)
32 4a2w_A RIG-I, retinoic acid in 100.0 8.3E-43 2.8E-47 355.8 24.3 319 3-327 257-752 (936)
33 4gl2_A Interferon-induced heli 100.0 2.2E-43 7.5E-48 353.6 18.6 306 3-312 16-509 (699)
34 4a4z_A Antiviral helicase SKI2 100.0 2.1E-41 7.3E-46 345.1 27.6 309 2-332 47-502 (997)
35 2fsf_A Preprotein translocase 100.0 2.1E-41 7.3E-46 327.7 25.8 309 3-326 83-585 (853)
36 3o8b_A HCV NS3 protease/helica 100.0 6E-42 2E-46 329.9 17.3 294 2-351 225-545 (666)
37 1nkt_A Preprotein translocase 100.0 1.6E-40 5.5E-45 322.0 26.8 309 3-326 120-619 (922)
38 1gm5_A RECG; helicase, replica 100.0 1.9E-41 6.6E-46 335.2 18.7 299 10-332 390-705 (780)
39 2whx_A Serine protease/ntpase/ 100.0 1.7E-41 5.9E-46 329.8 17.0 289 3-336 180-493 (618)
40 2eyq_A TRCF, transcription-rep 100.0 6.9E-40 2.4E-44 338.7 28.4 292 8-324 621-922 (1151)
41 2oca_A DAR protein, ATP-depend 100.0 1.4E-41 4.9E-46 328.1 14.4 299 4-322 123-453 (510)
42 1yks_A Genome polyprotein [con 100.0 2.2E-41 7.7E-46 318.4 15.2 278 5-336 4-314 (440)
43 2jlq_A Serine protease subunit 100.0 1.8E-40 6.3E-45 313.6 19.8 277 2-323 11-310 (451)
44 4f92_B U5 small nuclear ribonu 100.0 9.9E-40 3.4E-44 346.5 23.8 323 3-332 88-481 (1724)
45 4f92_B U5 small nuclear ribonu 100.0 5.8E-39 2E-43 340.7 29.3 317 3-332 935-1316(1724)
46 2wv9_A Flavivirin protease NS2 100.0 2.1E-39 7.2E-44 317.0 20.6 284 8-336 240-548 (673)
47 2z83_A Helicase/nucleoside tri 100.0 1.5E-39 5.1E-44 307.9 18.9 276 4-324 16-313 (459)
48 2v6i_A RNA helicase; membrane, 100.0 9.3E-39 3.2E-43 300.0 21.6 269 8-321 1-288 (431)
49 2fwr_A DNA repair protein RAD2 100.0 6E-40 2.1E-44 313.7 12.6 284 3-325 102-455 (472)
50 2xau_A PRE-mRNA-splicing facto 100.0 6.8E-37 2.3E-41 304.8 23.5 301 4-326 104-445 (773)
51 3rc3_A ATP-dependent RNA helic 100.0 2.8E-36 9.7E-41 294.0 26.9 291 6-342 152-462 (677)
52 3dmq_A RNA polymerase-associat 100.0 5E-37 1.7E-41 313.6 19.9 317 9-336 170-625 (968)
53 3h1t_A Type I site-specific re 100.0 3.3E-36 1.1E-40 295.2 19.2 289 9-313 198-545 (590)
54 3jux_A Protein translocase sub 100.0 8.8E-33 3E-37 262.5 32.1 331 6-355 87-624 (822)
55 1z63_A Helicase of the SNF2/RA 100.0 2.7E-34 9.1E-39 276.6 22.1 297 7-325 54-454 (500)
56 3mwy_W Chromo domain-containin 100.0 3.7E-32 1.3E-36 273.9 28.0 316 6-336 252-698 (800)
57 1z3i_X Similar to RAD54-like; 100.0 4.6E-31 1.6E-35 259.6 32.1 309 7-325 77-529 (644)
58 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.8E-32 9.7E-37 276.5 21.4 295 9-322 300-707 (1038)
59 3ber_A Probable ATP-dependent 100.0 9.8E-31 3.4E-35 227.7 18.6 174 3-182 74-247 (249)
60 3fe2_A Probable ATP-dependent 100.0 6.1E-31 2.1E-35 228.5 16.5 180 3-184 60-239 (242)
61 3iuy_A Probable ATP-dependent 100.0 1.4E-30 4.9E-35 224.3 17.3 177 3-181 51-227 (228)
62 1wrb_A DJVLGB; RNA helicase, D 100.0 6.5E-30 2.2E-34 223.7 19.5 192 2-194 53-251 (253)
63 3ly5_A ATP-dependent RNA helic 100.0 2.7E-30 9.1E-35 226.7 17.0 174 3-178 85-258 (262)
64 1vec_A ATP-dependent RNA helic 100.0 8.3E-30 2.8E-34 216.1 19.2 171 3-180 34-205 (206)
65 2pl3_A Probable ATP-dependent 100.0 1.1E-29 3.8E-34 219.9 19.1 178 3-183 56-233 (236)
66 3fmo_B ATP-dependent RNA helic 100.0 4.8E-30 1.6E-34 229.1 16.0 172 3-183 123-298 (300)
67 1q0u_A Bstdead; DEAD protein, 100.0 4.5E-30 1.5E-34 219.7 15.1 175 3-184 35-213 (219)
68 2hjv_A ATP-dependent RNA helic 100.0 3.3E-29 1.1E-33 203.5 19.1 157 188-344 6-162 (163)
69 3bor_A Human initiation factor 100.0 8E-30 2.7E-34 220.7 16.5 174 3-183 61-235 (237)
70 2oxc_A Probable ATP-dependent 100.0 1.5E-29 5.3E-34 217.9 17.2 172 3-182 55-228 (230)
71 1qde_A EIF4A, translation init 100.0 1.5E-29 5.3E-34 217.3 16.9 174 3-184 45-218 (224)
72 1t5i_A C_terminal domain of A 100.0 6.7E-29 2.3E-33 203.3 17.2 158 189-346 3-161 (172)
73 2gxq_A Heat resistant RNA depe 100.0 4.7E-29 1.6E-33 211.6 16.2 174 3-182 32-205 (207)
74 2rb4_A ATP-dependent RNA helic 100.0 6.1E-29 2.1E-33 204.5 15.9 160 188-347 4-170 (175)
75 1fuk_A Eukaryotic initiation f 100.0 1E-28 3.4E-33 201.2 16.7 157 191-347 3-160 (165)
76 2ipc_A Preprotein translocase 100.0 1E-26 3.6E-31 225.0 32.1 119 3-134 88-215 (997)
77 3eaq_A Heat resistant RNA depe 100.0 9.4E-28 3.2E-32 203.3 21.5 158 191-348 5-162 (212)
78 2p6n_A ATP-dependent RNA helic 100.0 1.6E-28 5.4E-33 204.1 15.6 172 172-344 10-182 (191)
79 1t6n_A Probable ATP-dependent 100.0 1.3E-28 4.3E-33 210.9 15.4 172 3-181 45-219 (220)
80 3dkp_A Probable ATP-dependent 100.0 1.5E-28 5E-33 214.1 14.2 178 3-185 60-243 (245)
81 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.3E-28 1.1E-32 201.4 14.9 159 187-345 15-174 (185)
82 1c4o_A DNA nucleotide excision 100.0 2.9E-26 1E-30 225.2 28.7 172 152-332 380-558 (664)
83 3i32_A Heat resistant RNA depe 100.0 9.1E-27 3.1E-31 206.2 20.9 156 191-346 2-157 (300)
84 2yjt_D ATP-dependent RNA helic 99.9 1.7E-28 5.7E-33 200.8 0.0 156 191-346 3-159 (170)
85 2d7d_A Uvrabc system protein B 99.9 5.5E-24 1.9E-28 209.0 22.4 212 102-330 320-562 (661)
86 2vl7_A XPD; helicase, unknown 99.9 7.5E-24 2.6E-28 204.1 12.5 103 216-324 383-521 (540)
87 3crv_A XPD/RAD3 related DNA he 99.9 4.3E-21 1.5E-25 185.6 27.9 299 4-324 17-531 (551)
88 3b6e_A Interferon-induced heli 99.9 2.4E-23 8.3E-28 177.5 9.7 155 3-161 42-216 (216)
89 1rif_A DAR protein, DNA helica 99.9 7.3E-22 2.5E-26 175.2 8.1 144 4-166 123-266 (282)
90 3llm_A ATP-dependent RNA helic 99.8 1.9E-20 6.6E-25 161.3 12.9 159 2-176 69-230 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 4.7E-20 1.6E-24 179.7 16.9 105 216-324 447-584 (620)
92 1z5z_A Helicase of the SNF2/RA 99.8 1.3E-19 4.4E-24 158.5 12.7 127 199-325 92-225 (271)
93 2fz4_A DNA repair protein RAD2 99.8 1.8E-18 6.1E-23 148.7 12.0 128 4-165 103-231 (237)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.1E-08 3.6E-13 99.8 7.5 138 4-161 159-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.4 5.3E-06 1.8E-10 72.7 12.9 125 199-328 105-241 (328)
96 3e1s_A Exodeoxyribonuclease V, 98.1 1E-05 3.5E-10 78.0 10.4 114 5-159 200-313 (574)
97 3lfu_A DNA helicase II; SF1 he 98.0 0.00023 7.9E-09 70.2 18.0 68 9-81 22-91 (647)
98 2gk6_A Regulator of nonsense t 98.0 2.6E-05 9E-10 76.3 10.6 55 7-69 193-247 (624)
99 3upu_A ATP-dependent DNA helic 98.0 3.7E-05 1.3E-09 72.4 10.5 48 11-66 47-94 (459)
100 4b3f_X DNA-binding protein smu 97.9 9.3E-06 3.2E-10 79.9 6.5 51 11-70 207-257 (646)
101 2xzl_A ATP-dependent helicase 97.9 5.5E-05 1.9E-09 75.8 11.8 56 7-70 373-428 (802)
102 3vkw_A Replicase large subunit 97.9 6.4E-05 2.2E-09 69.1 9.9 109 8-160 160-268 (446)
103 2wjy_A Regulator of nonsense t 97.8 6.4E-05 2.2E-09 75.2 10.4 55 7-69 369-423 (800)
104 2orw_A Thymidine kinase; TMTK, 97.7 7.3E-05 2.5E-09 60.8 6.4 40 8-56 2-41 (184)
105 2b8t_A Thymidine kinase; deoxy 97.7 0.00016 5.3E-09 60.5 8.4 115 7-161 10-124 (223)
106 1xx6_A Thymidine kinase; NESG, 97.6 0.00023 8E-09 58.0 8.0 41 7-56 6-46 (191)
107 3te6_A Regulatory protein SIR3 97.5 0.0014 4.7E-08 57.9 12.3 27 8-35 44-70 (318)
108 3ec2_A DNA replication protein 97.4 0.00038 1.3E-08 56.3 7.2 20 7-26 36-55 (180)
109 2j9r_A Thymidine kinase; TK1, 97.3 0.00048 1.6E-08 56.7 7.3 42 7-57 26-67 (214)
110 3e2i_A Thymidine kinase; Zn-bi 97.3 0.0012 4.2E-08 54.2 8.8 100 7-146 26-125 (219)
111 1l8q_A Chromosomal replication 97.2 0.0025 8.5E-08 56.9 11.3 17 9-25 37-53 (324)
112 1w4r_A Thymidine kinase; type 97.1 0.00047 1.6E-08 55.8 5.0 39 8-55 19-57 (195)
113 2kjq_A DNAA-related protein; s 97.1 0.00024 8.3E-09 55.5 3.1 18 8-25 35-52 (149)
114 1d2n_A N-ethylmaleimide-sensit 97.0 0.0094 3.2E-07 51.5 12.9 19 8-26 63-81 (272)
115 2z4s_A Chromosomal replication 97.0 0.0044 1.5E-07 57.7 11.1 18 9-26 130-147 (440)
116 2orv_A Thymidine kinase; TP4A 97.0 0.0011 3.8E-08 55.1 5.7 41 8-57 18-58 (234)
117 2chg_A Replication factor C sm 96.8 0.015 5.2E-07 48.2 11.8 39 120-159 101-139 (226)
118 3kl4_A SRP54, signal recogniti 96.7 0.014 4.7E-07 53.8 11.7 132 8-172 96-233 (433)
119 3bos_A Putative DNA replicatio 96.6 0.0037 1.3E-07 52.8 6.3 19 8-26 51-69 (242)
120 2v1u_A Cell division control p 96.6 0.0093 3.2E-07 54.4 9.5 20 7-26 42-61 (387)
121 2qby_B CDC6 homolog 3, cell di 96.5 0.0077 2.6E-07 54.9 8.7 18 9-26 45-62 (384)
122 2p65_A Hypothetical protein PF 96.5 0.009 3.1E-07 48.0 7.9 18 9-26 43-60 (187)
123 3u61_B DNA polymerase accessor 96.4 0.0079 2.7E-07 53.5 8.0 42 120-162 104-145 (324)
124 2w58_A DNAI, primosome compone 96.4 0.0095 3.3E-07 48.9 7.9 17 10-26 55-71 (202)
125 3co5_A Putative two-component 96.3 0.0058 2E-07 47.1 5.8 20 6-25 24-43 (143)
126 3h4m_A Proteasome-activating n 96.3 0.027 9.3E-07 48.9 10.6 19 7-25 49-67 (285)
127 3eie_A Vacuolar protein sortin 96.3 0.0092 3.1E-07 53.1 7.4 18 9-26 51-68 (322)
128 2o0j_A Terminase, DNA packagin 96.2 0.035 1.2E-06 50.3 10.7 56 9-71 178-233 (385)
129 3cpe_A Terminase, DNA packagin 96.2 0.041 1.4E-06 53.3 12.0 132 9-164 178-315 (592)
130 3syl_A Protein CBBX; photosynt 96.2 0.051 1.7E-06 47.8 11.7 19 8-26 66-84 (309)
131 2dr3_A UPF0273 protein PH0284; 96.1 0.022 7.4E-07 48.2 8.8 54 6-69 20-73 (247)
132 3dm5_A SRP54, signal recogniti 96.1 0.058 2E-06 49.7 12.0 131 9-172 100-234 (443)
133 2qby_A CDC6 homolog 1, cell di 96.1 0.025 8.6E-07 51.4 9.7 18 8-25 44-61 (386)
134 1jbk_A CLPB protein; beta barr 96.1 0.084 2.9E-06 42.3 12.0 18 9-26 43-60 (195)
135 1uaa_A REP helicase, protein ( 96.0 0.0079 2.7E-07 59.4 6.4 69 9-82 15-86 (673)
136 3pfi_A Holliday junction ATP-d 95.9 0.027 9.4E-07 50.3 8.6 16 10-25 56-71 (338)
137 1sxj_D Activator 1 41 kDa subu 95.9 0.026 9E-07 50.7 8.6 39 120-159 132-170 (353)
138 3cf0_A Transitional endoplasmi 95.9 0.02 6.8E-07 50.3 7.5 19 7-25 47-65 (301)
139 2w0m_A SSO2452; RECA, SSPF, un 95.8 0.049 1.7E-06 45.5 9.3 23 5-27 19-41 (235)
140 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.017 5.8E-07 51.4 6.4 18 8-25 44-61 (322)
141 1fnn_A CDC6P, cell division co 95.7 0.016 5.4E-07 52.9 6.4 15 11-25 46-60 (389)
142 2qp9_X Vacuolar protein sortin 95.7 0.02 6.7E-07 51.7 6.8 19 8-26 83-101 (355)
143 2q6t_A DNAB replication FORK h 95.6 0.021 7.2E-07 53.2 6.9 53 6-67 197-249 (444)
144 1sxj_E Activator 1 40 kDa subu 95.6 0.063 2.2E-06 48.2 9.8 41 120-161 133-173 (354)
145 4b4t_J 26S protease regulatory 95.5 0.13 4.5E-06 46.6 11.6 18 8-25 181-198 (405)
146 1iqp_A RFCS; clamp loader, ext 95.5 0.051 1.7E-06 48.1 8.9 42 120-163 109-150 (327)
147 3pvs_A Replication-associated 95.5 0.011 3.9E-07 54.9 4.7 17 10-26 51-67 (447)
148 3hu3_A Transitional endoplasmi 95.5 0.034 1.2E-06 52.3 7.9 19 7-25 236-254 (489)
149 3vfd_A Spastin; ATPase, microt 95.4 0.048 1.6E-06 49.8 8.5 19 8-26 147-165 (389)
150 2r6a_A DNAB helicase, replicat 95.4 0.041 1.4E-06 51.5 8.1 52 6-66 200-251 (454)
151 1g5t_A COB(I)alamin adenosyltr 95.3 0.075 2.6E-06 43.0 8.4 142 9-171 28-172 (196)
152 2zan_A Vacuolar protein sortin 95.3 0.04 1.4E-06 51.3 7.8 18 8-25 166-183 (444)
153 1jr3_A DNA polymerase III subu 95.3 0.083 2.8E-06 47.8 9.6 41 119-161 117-157 (373)
154 2d7d_A Uvrabc system protein B 95.2 0.031 1.1E-06 54.9 6.8 55 6-72 28-83 (661)
155 3cmu_A Protein RECA, recombina 95.1 0.035 1.2E-06 60.4 7.4 44 6-58 1424-1467(2050)
156 1a5t_A Delta prime, HOLB; zinc 95.1 0.043 1.5E-06 49.0 7.0 17 11-27 26-42 (334)
157 2hjv_A ATP-dependent RNA helic 95.1 0.2 6.8E-06 39.3 10.1 75 45-130 34-112 (163)
158 1pjr_A PCRA; DNA repair, DNA r 95.0 0.031 1E-06 55.7 6.4 69 9-82 24-94 (724)
159 1njg_A DNA polymerase III subu 95.0 0.24 8.1E-06 41.3 11.2 15 11-25 47-61 (250)
160 2ehv_A Hypothetical protein PH 95.0 0.034 1.2E-06 47.1 5.8 46 120-165 134-184 (251)
161 1gm5_A RECG; helicase, replica 94.9 0.059 2E-06 53.8 8.0 76 216-291 416-496 (780)
162 1n0w_A DNA repair protein RAD5 94.9 0.088 3E-06 44.3 8.2 23 6-28 21-43 (243)
163 2zr9_A Protein RECA, recombina 94.9 0.023 8E-07 51.0 4.6 42 6-56 58-99 (349)
164 3u4q_A ATP-dependent helicase/ 94.9 0.028 9.5E-07 59.4 5.9 59 8-69 22-80 (1232)
165 3hjh_A Transcription-repair-co 94.8 0.18 6.3E-06 47.2 10.7 54 6-71 11-64 (483)
166 1xp8_A RECA protein, recombina 94.8 0.041 1.4E-06 49.6 6.0 43 6-57 71-113 (366)
167 3hr8_A Protein RECA; alpha and 94.8 0.031 1.1E-06 50.1 5.2 44 6-58 58-101 (356)
168 2zpa_A Uncharacterized protein 94.8 0.076 2.6E-06 51.5 8.0 96 11-163 194-289 (671)
169 1hqc_A RUVB; extended AAA-ATPa 94.7 0.04 1.4E-06 48.8 5.7 17 9-25 38-54 (324)
170 1sxj_B Activator 1 37 kDa subu 94.6 0.14 4.9E-06 45.1 9.0 38 121-159 107-144 (323)
171 1sxj_C Activator 1 40 kDa subu 94.6 0.092 3.1E-06 46.9 7.8 38 120-158 109-146 (340)
172 2gno_A DNA polymerase III, gam 94.5 0.18 6.3E-06 44.2 9.2 42 119-162 80-121 (305)
173 1ls1_A Signal recognition part 94.4 0.72 2.5E-05 40.1 13.0 20 8-27 97-116 (295)
174 3m6a_A ATP-dependent protease 94.3 0.076 2.6E-06 50.8 6.8 18 8-25 107-124 (543)
175 1fuk_A Eukaryotic initiation f 94.2 0.33 1.1E-05 38.0 9.5 74 45-129 29-106 (165)
176 1sxj_A Activator 1 95 kDa subu 94.2 0.17 5.8E-06 48.1 9.0 41 120-162 147-189 (516)
177 1t5i_A C_terminal domain of A 94.1 0.84 2.9E-05 36.0 11.8 74 45-129 30-107 (172)
178 2chq_A Replication factor C sm 94.1 0.024 8.1E-07 50.1 2.9 16 11-26 40-55 (319)
179 2rb4_A ATP-dependent RNA helic 94.1 0.26 8.9E-06 39.1 8.8 72 45-127 33-108 (175)
180 3eaq_A Heat resistant RNA depe 94.0 0.37 1.3E-05 39.6 9.8 72 45-127 30-105 (212)
181 3oiy_A Reverse gyrase helicase 93.7 0.13 4.5E-06 47.3 7.1 77 215-291 62-145 (414)
182 1w5s_A Origin recognition comp 93.5 0.41 1.4E-05 43.7 10.2 19 8-26 49-69 (412)
183 3io5_A Recombination and repai 93.5 0.079 2.7E-06 46.4 4.8 93 8-134 28-124 (333)
184 3n70_A Transport activator; si 93.4 0.037 1.3E-06 42.6 2.4 20 6-25 21-40 (145)
185 2zts_A Putative uncharacterize 93.1 0.12 4.1E-06 43.6 5.4 54 7-69 28-81 (251)
186 3e70_C DPA, signal recognition 93.0 0.49 1.7E-05 41.8 9.3 53 121-173 211-264 (328)
187 3cf2_A TER ATPase, transitiona 92.9 0.26 8.9E-06 49.1 8.1 18 8-25 237-254 (806)
188 2p6n_A ATP-dependent RNA helic 92.8 0.59 2E-05 37.7 9.0 72 46-128 54-129 (191)
189 1zp6_A Hypothetical protein AT 92.7 0.045 1.5E-06 44.3 2.0 24 2-25 2-25 (191)
190 2qgz_A Helicase loader, putati 92.4 0.14 4.7E-06 45.0 5.0 19 9-27 152-170 (308)
191 1qvr_A CLPB protein; coiled co 92.3 0.17 5.7E-06 51.5 6.0 17 9-25 191-207 (854)
192 1e9r_A Conjugal transfer prote 92.2 0.15 5.3E-06 47.2 5.3 45 7-60 51-95 (437)
193 3bh0_A DNAB-like replicative h 91.8 0.3 1E-05 43.0 6.5 54 6-69 65-118 (315)
194 2fna_A Conserved hypothetical 91.8 3.5 0.00012 36.4 13.7 39 122-162 138-179 (357)
195 1ypw_A Transitional endoplasmi 91.6 0.23 7.7E-06 50.0 6.0 20 6-25 235-254 (806)
196 2v1x_A ATP-dependent DNA helic 91.6 0.72 2.5E-05 44.5 9.3 60 216-275 83-144 (591)
197 3i5x_A ATP-dependent RNA helic 91.3 1.9 6.6E-05 41.2 12.1 77 45-129 338-418 (563)
198 3i32_A Heat resistant RNA depe 91.1 1 3.5E-05 39.2 9.0 72 45-127 27-102 (300)
199 4ddu_A Reverse gyrase; topoiso 90.7 0.4 1.4E-05 50.0 6.9 77 215-291 119-202 (1104)
200 3sqw_A ATP-dependent RNA helic 90.5 2.6 8.7E-05 40.6 12.1 78 45-130 287-368 (579)
201 1oyw_A RECQ helicase, ATP-depe 90.5 0.89 3E-05 43.2 8.7 60 216-275 64-123 (523)
202 1j8m_F SRP54, signal recogniti 90.4 2.6 8.8E-05 36.6 10.9 20 9-28 98-117 (297)
203 2qor_A Guanylate kinase; phosp 90.3 0.13 4.6E-06 42.0 2.5 21 5-25 8-28 (204)
204 2z43_A DNA repair and recombin 90.3 0.27 9.2E-06 43.5 4.6 61 6-69 104-165 (324)
205 2jgn_A DBX, DDX3, ATP-dependen 90.3 1.1 3.9E-05 35.7 8.0 72 45-127 45-120 (185)
206 2eyq_A TRCF, transcription-rep 90.2 0.99 3.4E-05 47.3 9.4 77 215-291 650-731 (1151)
207 3iij_A Coilin-interacting nucl 90.2 0.16 5.4E-06 40.5 2.7 22 5-26 7-28 (180)
208 2eyu_A Twitching motility prot 90.1 0.17 5.6E-06 43.3 2.9 20 6-25 22-41 (261)
209 3vaa_A Shikimate kinase, SK; s 89.9 0.14 4.8E-06 41.7 2.3 21 6-26 22-42 (199)
210 3pxi_A Negative regulator of g 89.9 0.2 6.9E-06 50.1 3.8 16 11-26 523-538 (758)
211 2oap_1 GSPE-2, type II secreti 89.8 0.11 3.9E-06 49.0 1.8 20 6-25 257-276 (511)
212 2ffh_A Protein (FFH); SRP54, s 89.8 5.4 0.00019 36.5 12.9 20 8-27 97-116 (425)
213 2ewv_A Twitching motility prot 89.7 0.37 1.3E-05 43.5 5.1 20 6-25 133-152 (372)
214 1kgd_A CASK, peripheral plasma 89.7 0.16 5.4E-06 40.6 2.4 19 7-25 3-21 (180)
215 3cf2_A TER ATPase, transitiona 89.6 0.62 2.1E-05 46.5 7.0 18 8-25 510-527 (806)
216 3jvv_A Twitching mobility prot 89.6 0.35 1.2E-05 43.4 4.8 19 7-25 121-139 (356)
217 2r44_A Uncharacterized protein 89.5 0.098 3.3E-06 46.5 1.1 21 5-25 42-62 (331)
218 3u4q_B ATP-dependent helicase/ 89.5 0.58 2E-05 49.3 7.0 49 13-68 5-53 (1166)
219 3cmw_A Protein RECA, recombina 89.4 0.39 1.3E-05 51.8 5.7 94 7-135 1429-1523(1706)
220 3ber_A Probable ATP-dependent 89.3 2.3 7.9E-05 35.7 9.6 72 216-291 110-192 (249)
221 2px0_A Flagellar biosynthesis 89.2 0.39 1.3E-05 41.9 4.7 21 8-28 104-124 (296)
222 1t6n_A Probable ATP-dependent 89.0 2 7E-05 35.1 8.9 72 217-291 82-164 (220)
223 2qmh_A HPR kinase/phosphorylas 88.9 0.22 7.5E-06 40.3 2.6 19 7-25 32-50 (205)
224 1u94_A RECA protein, recombina 88.8 0.46 1.6E-05 42.6 4.9 43 6-57 60-102 (356)
225 4a1f_A DNAB helicase, replicat 88.8 0.79 2.7E-05 40.7 6.4 53 6-68 43-95 (338)
226 1lvg_A Guanylate kinase, GMP k 88.7 0.19 6.5E-06 40.9 2.2 18 8-25 3-20 (198)
227 3a8t_A Adenylate isopentenyltr 88.7 0.23 7.8E-06 43.9 2.8 19 8-26 39-57 (339)
228 2i1q_A DNA repair and recombin 88.6 0.41 1.4E-05 42.2 4.5 64 6-69 95-166 (322)
229 3bgw_A DNAB-like replicative h 88.5 0.53 1.8E-05 43.7 5.3 54 6-69 194-247 (444)
230 1tue_A Replication protein E1; 88.5 0.24 8.3E-06 40.3 2.6 17 10-26 59-75 (212)
231 3trf_A Shikimate kinase, SK; a 88.4 0.21 7E-06 40.0 2.2 18 9-26 5-22 (185)
232 2j41_A Guanylate kinase; GMP, 88.4 0.22 7.4E-06 40.6 2.4 20 6-25 3-22 (207)
233 1qhx_A CPT, protein (chloramph 88.4 0.22 7.5E-06 39.5 2.4 17 9-25 3-19 (178)
234 2qt1_A Nicotinamide riboside k 88.3 0.22 7.6E-06 40.7 2.4 24 2-25 14-37 (207)
235 3nbx_X ATPase RAVA; AAA+ ATPas 88.3 0.12 4E-06 48.8 0.7 23 3-25 35-57 (500)
236 3t15_A Ribulose bisphosphate c 88.3 0.22 7.5E-06 43.4 2.5 18 8-25 35-52 (293)
237 4b4t_M 26S protease regulatory 88.3 0.53 1.8E-05 43.3 5.1 18 8-25 214-231 (434)
238 2r8r_A Sensor protein; KDPD, P 88.3 0.53 1.8E-05 39.0 4.6 21 10-30 7-27 (228)
239 2j37_W Signal recognition part 88.2 4.6 0.00016 37.9 11.5 37 9-54 101-137 (504)
240 2gza_A Type IV secretion syste 88.2 0.22 7.6E-06 44.8 2.5 20 6-25 172-191 (361)
241 2qz4_A Paraplegin; AAA+, SPG7, 88.1 0.23 7.7E-06 42.3 2.4 19 7-25 37-55 (262)
242 2bjv_A PSP operon transcriptio 88.1 0.22 7.6E-06 42.5 2.4 20 6-25 26-45 (265)
243 4gp7_A Metallophosphoesterase; 88.1 0.21 7.1E-06 39.5 2.0 20 6-25 6-25 (171)
244 4b4t_L 26S protease subunit RP 88.0 0.55 1.9E-05 43.2 5.1 18 8-25 214-231 (437)
245 1y63_A LMAJ004144AAA protein; 88.0 0.23 8E-06 39.7 2.3 19 7-25 8-26 (184)
246 2cvh_A DNA repair and recombin 88.0 0.45 1.5E-05 39.1 4.2 23 6-28 17-39 (220)
247 1cr0_A DNA primase/helicase; R 87.9 0.55 1.9E-05 40.8 4.9 22 6-27 32-53 (296)
248 3b9p_A CG5977-PA, isoform A; A 87.9 0.23 7.8E-06 43.3 2.3 18 8-25 53-70 (297)
249 4b4t_K 26S protease regulatory 87.8 0.62 2.1E-05 42.8 5.2 18 8-25 205-222 (428)
250 1nlf_A Regulatory protein REPA 87.8 0.78 2.7E-05 39.4 5.7 25 4-28 25-49 (279)
251 3fht_A ATP-dependent RNA helic 87.8 2.7 9.4E-05 38.0 9.8 73 45-128 265-341 (412)
252 1p9r_A General secretion pathw 87.8 0.36 1.2E-05 44.3 3.7 19 7-25 165-183 (418)
253 2l8b_A Protein TRAI, DNA helic 87.7 0.61 2.1E-05 37.0 4.4 47 10-64 52-98 (189)
254 3tau_A Guanylate kinase, GMP k 87.7 0.32 1.1E-05 39.9 3.0 19 7-25 6-24 (208)
255 4ag6_A VIRB4 ATPase, type IV s 87.6 0.45 1.5E-05 43.4 4.2 41 8-57 34-74 (392)
256 3fe2_A Probable ATP-dependent 87.3 2.3 8E-05 35.4 8.3 72 216-291 101-182 (242)
257 3tr0_A Guanylate kinase, GMP k 87.2 0.28 9.5E-06 39.9 2.4 19 7-25 5-23 (205)
258 1s2m_A Putative ATP-dependent 87.2 3 0.0001 37.6 9.6 73 45-128 257-333 (400)
259 3hws_A ATP-dependent CLP prote 87.2 0.27 9.2E-06 44.3 2.5 19 8-26 50-68 (363)
260 1c4o_A DNA nucleotide excision 87.2 23 0.00078 34.6 16.2 78 45-133 438-519 (664)
261 2pt7_A CAG-ALFA; ATPase, prote 87.1 0.2 6.9E-06 44.5 1.5 20 6-25 168-187 (330)
262 1kag_A SKI, shikimate kinase I 87.1 0.28 9.7E-06 38.6 2.3 17 9-25 4-20 (173)
263 1ofh_A ATP-dependent HSL prote 87.0 0.28 9.7E-06 42.8 2.5 18 8-25 49-66 (310)
264 1z6g_A Guanylate kinase; struc 86.8 0.31 1.1E-05 40.3 2.5 20 6-25 20-39 (218)
265 2j0s_A ATP-dependent RNA helic 86.8 3.4 0.00012 37.5 9.7 73 45-128 275-351 (410)
266 1xti_A Probable ATP-dependent 86.5 3.5 0.00012 37.0 9.6 75 45-130 249-327 (391)
267 3exa_A TRNA delta(2)-isopenten 86.4 0.37 1.3E-05 42.1 2.8 18 9-26 3-20 (322)
268 1zd8_A GTP:AMP phosphotransfer 86.4 0.29 1E-05 40.7 2.1 21 5-25 3-23 (227)
269 1kht_A Adenylate kinase; phosp 86.4 0.31 1.1E-05 39.0 2.2 18 8-25 2-19 (192)
270 3b5x_A Lipid A export ATP-bind 86.4 1.7 5.7E-05 41.9 7.7 43 119-162 496-538 (582)
271 1ex7_A Guanylate kinase; subst 86.4 0.43 1.5E-05 38.3 2.9 16 10-25 2-17 (186)
272 1knq_A Gluconate kinase; ALFA/ 86.3 0.3 1E-05 38.6 2.0 18 8-25 7-24 (175)
273 1lv7_A FTSH; alpha/beta domain 86.2 0.31 1.1E-05 41.4 2.2 17 9-25 45-61 (257)
274 4eun_A Thermoresistant glucoki 86.1 0.34 1.2E-05 39.4 2.3 18 8-25 28-45 (200)
275 2l82_A Designed protein OR32; 86.1 3.4 0.00012 28.9 6.9 51 220-270 5-55 (162)
276 3ney_A 55 kDa erythrocyte memb 86.1 0.46 1.6E-05 38.5 3.0 19 7-25 17-35 (197)
277 3pey_A ATP-dependent RNA helic 86.0 15 0.0005 32.7 13.6 76 45-131 242-321 (395)
278 3a00_A Guanylate kinase, GMP k 85.9 0.36 1.2E-05 38.7 2.4 17 9-25 1-17 (186)
279 4b4t_I 26S protease regulatory 85.9 0.98 3.3E-05 41.3 5.3 18 8-25 215-232 (437)
280 3lw7_A Adenylate kinase relate 85.9 0.32 1.1E-05 38.2 2.0 15 11-25 3-17 (179)
281 3uk6_A RUVB-like 2; hexameric 85.8 0.39 1.3E-05 43.2 2.8 18 9-26 70-87 (368)
282 1s96_A Guanylate kinase, GMP k 85.7 0.36 1.2E-05 39.9 2.3 21 5-25 12-32 (219)
283 3cm0_A Adenylate kinase; ATP-b 85.5 0.29 9.8E-06 39.1 1.6 19 8-26 3-21 (186)
284 2i4i_A ATP-dependent RNA helic 85.5 2.3 8E-05 38.6 8.0 72 45-127 275-350 (417)
285 1yks_A Genome polyprotein [con 85.4 1.8 6.3E-05 39.9 7.2 70 45-126 176-245 (440)
286 1znw_A Guanylate kinase, GMP k 85.3 0.4 1.4E-05 39.2 2.3 21 5-25 16-36 (207)
287 1f9v_A Kinesin-like protein KA 85.3 0.39 1.3E-05 42.8 2.4 24 3-26 77-102 (347)
288 1ojl_A Transcriptional regulat 85.1 0.39 1.3E-05 42.0 2.3 20 6-25 22-41 (304)
289 3bs4_A Uncharacterized protein 85.1 1.5 5.1E-05 37.2 5.8 55 6-70 18-72 (260)
290 4b4t_H 26S protease regulatory 85.0 0.88 3E-05 42.0 4.6 19 7-25 241-259 (467)
291 1w36_B RECB, exodeoxyribonucle 84.9 1.2 4E-05 47.0 6.1 61 8-69 16-79 (1180)
292 2ius_A DNA translocase FTSK; n 84.8 0.9 3.1E-05 42.7 4.7 31 4-35 162-192 (512)
293 1um8_A ATP-dependent CLP prote 84.8 0.42 1.4E-05 43.2 2.5 19 8-26 71-89 (376)
294 3b9q_A Chloroplast SRP recepto 84.7 1 3.4E-05 39.3 4.7 21 6-26 97-117 (302)
295 1vma_A Cell division protein F 84.6 1 3.5E-05 39.4 4.7 20 8-27 103-122 (306)
296 3foz_A TRNA delta(2)-isopenten 84.4 0.51 1.7E-05 41.1 2.7 17 10-26 11-27 (316)
297 2c9o_A RUVB-like 1; hexameric 84.4 0.52 1.8E-05 43.9 3.0 19 8-26 62-80 (456)
298 1zak_A Adenylate kinase; ATP:A 84.3 0.46 1.6E-05 39.2 2.3 20 7-26 3-22 (222)
299 3uie_A Adenylyl-sulfate kinase 84.3 0.44 1.5E-05 38.7 2.1 20 7-26 23-42 (200)
300 3lnc_A Guanylate kinase, GMP k 84.2 0.34 1.2E-05 40.4 1.5 20 6-25 24-43 (231)
301 2rhm_A Putative kinase; P-loop 84.2 0.42 1.4E-05 38.3 2.0 19 8-26 4-22 (193)
302 1ly1_A Polynucleotide kinase; 84.1 0.43 1.5E-05 37.7 2.0 16 10-25 3-18 (181)
303 3t0q_A AGR253WP; kinesin, alph 84.1 0.42 1.4E-05 42.6 2.1 24 3-26 78-103 (349)
304 2ze6_A Isopentenyl transferase 84.1 0.54 1.8E-05 39.9 2.7 16 11-26 3-18 (253)
305 2yvu_A Probable adenylyl-sulfa 84.1 1.2 4.1E-05 35.5 4.7 20 7-26 11-30 (186)
306 3nwn_A Kinesin-like protein KI 84.0 0.31 1.1E-05 43.6 1.2 24 3-26 97-122 (359)
307 3umf_A Adenylate kinase; rossm 84.0 0.65 2.2E-05 38.3 3.0 21 6-26 26-46 (217)
308 1rj9_A FTSY, signal recognitio 84.0 1.1 3.7E-05 39.1 4.6 18 8-25 101-118 (304)
309 2bdt_A BH3686; alpha-beta prot 84.0 0.36 1.2E-05 38.7 1.5 17 9-25 2-18 (189)
310 3kb2_A SPBC2 prophage-derived 83.9 0.45 1.5E-05 37.3 2.0 15 11-25 3-17 (173)
311 2db3_A ATP-dependent RNA helic 83.8 4.5 0.00015 37.2 9.0 69 48-127 302-374 (434)
312 1ixz_A ATP-dependent metallopr 83.7 0.48 1.6E-05 40.1 2.2 16 10-25 50-65 (254)
313 2yjt_D ATP-dependent RNA helic 84.2 0.22 7.4E-06 39.4 0.0 74 45-129 29-106 (170)
314 3d8b_A Fidgetin-like protein 1 83.6 0.49 1.7E-05 42.5 2.3 19 8-26 116-134 (357)
315 3iuy_A Probable ATP-dependent 83.4 2.8 9.7E-05 34.5 6.9 72 216-291 93-173 (228)
316 2r62_A Cell division protease 83.3 0.29 9.8E-06 41.9 0.7 17 9-25 44-60 (268)
317 3f9v_A Minichromosome maintena 83.3 0.53 1.8E-05 45.5 2.6 15 11-25 329-343 (595)
318 2oxc_A Probable ATP-dependent 83.3 3.1 0.0001 34.4 7.1 71 216-291 91-172 (230)
319 1q57_A DNA primase/helicase; d 83.3 0.96 3.3E-05 42.7 4.3 54 6-68 239-292 (503)
320 3nwj_A ATSK2; P loop, shikimat 83.3 0.53 1.8E-05 39.8 2.3 19 7-25 46-64 (250)
321 1bg2_A Kinesin; motor protein, 83.3 0.37 1.3E-05 42.5 1.3 24 3-26 70-95 (325)
322 1v5w_A DMC1, meiotic recombina 83.3 1.2 4.3E-05 39.6 4.8 61 6-69 119-180 (343)
323 2iut_A DNA translocase FTSK; n 83.1 1.2 4E-05 42.4 4.7 31 4-35 209-239 (574)
324 1zuh_A Shikimate kinase; alpha 83.0 0.52 1.8E-05 36.9 2.1 17 10-26 8-24 (168)
325 1zu4_A FTSY; GTPase, signal re 83.0 1.3 4.4E-05 39.0 4.7 21 7-27 103-123 (320)
326 4a74_A DNA repair and recombin 83.0 0.63 2.1E-05 38.5 2.6 21 6-26 22-42 (231)
327 1wp9_A ATP-dependent RNA helic 82.9 5.2 0.00018 36.9 9.3 76 45-131 360-447 (494)
328 1vec_A ATP-dependent RNA helic 82.9 5.2 0.00018 32.1 8.2 72 216-291 70-152 (206)
329 3crm_A TRNA delta(2)-isopenten 82.8 0.64 2.2E-05 40.9 2.6 17 10-26 6-22 (323)
330 3bfn_A Kinesin-like protein KI 82.8 0.46 1.6E-05 42.9 1.8 24 3-26 91-116 (388)
331 1nij_A Hypothetical protein YJ 82.8 0.76 2.6E-05 40.4 3.2 15 11-25 6-20 (318)
332 1tev_A UMP-CMP kinase; ploop, 82.7 0.52 1.8E-05 37.8 2.0 19 8-26 2-20 (196)
333 1goj_A Kinesin, kinesin heavy 82.5 0.44 1.5E-05 42.6 1.5 24 3-26 73-98 (355)
334 4etp_A Kinesin-like protein KA 82.4 0.43 1.5E-05 43.5 1.5 24 3-26 133-158 (403)
335 1v8k_A Kinesin-like protein KI 82.4 0.4 1.4E-05 43.6 1.2 24 3-26 147-172 (410)
336 2vvg_A Kinesin-2; motor protei 82.4 0.42 1.4E-05 42.6 1.3 24 3-26 82-107 (350)
337 3lre_A Kinesin-like protein KI 82.4 0.44 1.5E-05 42.6 1.5 24 3-26 98-123 (355)
338 3tif_A Uncharacterized ABC tra 82.3 0.63 2.1E-05 39.0 2.4 19 6-24 28-46 (235)
339 1aky_A Adenylate kinase; ATP:A 82.3 0.62 2.1E-05 38.4 2.3 19 8-26 3-21 (220)
340 2og2_A Putative signal recogni 82.3 1.4 4.7E-05 39.5 4.7 21 6-26 154-174 (359)
341 2gxq_A Heat resistant RNA depe 82.2 4.8 0.00016 32.3 7.8 72 216-291 71-150 (207)
342 1gvn_B Zeta; postsegregational 82.2 0.5 1.7E-05 40.9 1.8 18 8-25 32-49 (287)
343 2v54_A DTMP kinase, thymidylat 82.2 0.63 2.2E-05 37.7 2.3 18 8-25 3-20 (204)
344 2c95_A Adenylate kinase 1; tra 82.2 0.59 2E-05 37.5 2.1 20 7-26 7-26 (196)
345 2x8a_A Nuclear valosin-contain 82.2 0.65 2.2E-05 39.9 2.4 16 10-25 45-60 (274)
346 2y65_A Kinesin, kinesin heavy 82.1 0.43 1.5E-05 42.8 1.3 24 3-26 77-102 (365)
347 1via_A Shikimate kinase; struc 82.1 0.62 2.1E-05 36.8 2.2 17 10-26 5-21 (175)
348 3dc4_A Kinesin-like protein NO 82.1 0.37 1.3E-05 42.8 0.9 24 3-26 87-112 (344)
349 2h58_A Kinesin-like protein KI 82.1 0.44 1.5E-05 42.1 1.3 23 4-26 74-98 (330)
350 2rep_A Kinesin-like protein KI 82.0 0.54 1.9E-05 42.3 1.9 24 3-26 108-133 (376)
351 2pez_A Bifunctional 3'-phospho 82.0 0.61 2.1E-05 37.0 2.1 18 8-25 4-21 (179)
352 4a14_A Kinesin, kinesin-like p 81.9 0.44 1.5E-05 42.4 1.3 24 3-26 76-101 (344)
353 4fcw_A Chaperone protein CLPB; 81.9 0.57 1.9E-05 40.9 2.0 17 10-26 48-64 (311)
354 3b6u_A Kinesin-like protein KI 81.8 0.43 1.5E-05 42.9 1.2 24 3-26 94-119 (372)
355 1t5c_A CENP-E protein, centrom 81.8 0.43 1.5E-05 42.5 1.2 24 3-26 70-95 (349)
356 3p32_A Probable GTPase RV1496/ 81.7 14 0.00049 32.7 11.3 18 9-26 79-96 (355)
357 2v9p_A Replication protein E1; 81.6 0.89 3.1E-05 39.6 3.1 20 6-25 123-142 (305)
358 2r2a_A Uncharacterized protein 81.6 0.92 3.2E-05 36.8 3.0 17 11-27 7-23 (199)
359 2zfi_A Kinesin-like protein KI 81.5 0.47 1.6E-05 42.6 1.3 24 3-26 82-107 (366)
360 3gbj_A KIF13B protein; kinesin 81.5 0.44 1.5E-05 42.5 1.2 24 3-26 85-110 (354)
361 3c8u_A Fructokinase; YP_612366 81.5 0.57 1.9E-05 38.3 1.8 19 7-25 20-38 (208)
362 1x88_A Kinesin-like protein KI 81.5 0.43 1.5E-05 42.7 1.0 24 3-26 81-106 (359)
363 3cob_A Kinesin heavy chain-lik 81.4 0.43 1.5E-05 42.8 1.0 24 3-26 72-97 (369)
364 3ice_A Transcription terminati 81.3 1.8 6.1E-05 39.1 4.9 23 4-26 169-191 (422)
365 2cbz_A Multidrug resistance-as 81.3 0.72 2.5E-05 38.7 2.4 20 6-25 28-47 (237)
366 2vhj_A Ntpase P4, P4; non- hyd 81.3 0.86 2.9E-05 40.0 2.9 22 7-28 121-142 (331)
367 2plr_A DTMP kinase, probable t 81.2 0.68 2.3E-05 37.7 2.1 18 8-25 3-20 (213)
368 1sgw_A Putative ABC transporte 81.1 0.77 2.6E-05 37.8 2.4 43 119-161 149-191 (214)
369 1ye8_A Protein THEP1, hypothet 81.0 0.69 2.4E-05 36.8 2.1 15 11-25 2-16 (178)
370 1htw_A HI0065; nucleotide-bind 81.0 0.76 2.6E-05 35.7 2.2 20 6-25 30-49 (158)
371 2heh_A KIF2C protein; kinesin, 81.0 0.47 1.6E-05 42.8 1.2 24 3-26 127-152 (387)
372 1u0j_A DNA replication protein 80.9 0.97 3.3E-05 38.5 3.0 17 11-27 106-122 (267)
373 1iy2_A ATP-dependent metallopr 80.9 0.7 2.4E-05 39.7 2.2 16 10-25 74-89 (278)
374 3t61_A Gluconokinase; PSI-biol 80.8 0.75 2.6E-05 37.3 2.3 17 9-25 18-34 (202)
375 3u06_A Protein claret segregat 80.8 0.51 1.7E-05 43.1 1.3 24 3-26 131-156 (412)
376 2iyv_A Shikimate kinase, SK; t 80.7 0.79 2.7E-05 36.4 2.4 17 10-26 3-19 (184)
377 2nr8_A Kinesin-like protein KI 80.7 0.5 1.7E-05 42.3 1.2 24 3-26 96-121 (358)
378 2cdn_A Adenylate kinase; phosp 80.6 0.81 2.8E-05 37.0 2.4 18 8-25 19-36 (201)
379 1g41_A Heat shock protein HSLU 80.6 0.78 2.7E-05 42.3 2.5 18 8-25 49-66 (444)
380 3d3q_A TRNA delta(2)-isopenten 80.5 0.88 3E-05 40.3 2.7 17 10-26 8-24 (340)
381 3nh6_A ATP-binding cassette SU 80.4 0.85 2.9E-05 39.9 2.6 20 6-25 77-96 (306)
382 2yhs_A FTSY, cell division pro 80.4 1.7 5.9E-05 40.6 4.7 21 6-26 290-310 (503)
383 3asz_A Uridine kinase; cytidin 80.3 0.71 2.4E-05 37.7 2.0 19 7-25 4-22 (211)
384 2wv9_A Flavivirin protease NS2 80.3 4.2 0.00014 39.8 7.7 70 45-126 409-478 (673)
385 1g8p_A Magnesium-chelatase 38 80.2 0.45 1.5E-05 42.4 0.8 18 8-25 44-61 (350)
386 1in4_A RUVB, holliday junction 80.0 0.97 3.3E-05 40.1 2.9 16 10-25 52-67 (334)
387 1xjc_A MOBB protein homolog; s 80.0 2.2 7.4E-05 33.5 4.6 15 11-25 6-20 (169)
388 2wbe_C Bipolar kinesin KRP-130 79.9 0.49 1.7E-05 42.6 0.9 24 3-26 93-118 (373)
389 2ff7_A Alpha-hemolysin translo 79.9 0.84 2.9E-05 38.5 2.3 20 6-25 32-51 (247)
390 2pze_A Cystic fibrosis transme 79.8 0.84 2.9E-05 38.0 2.3 20 6-25 31-50 (229)
391 1qde_A EIF4A, translation init 79.8 3.3 0.00011 33.9 6.0 71 216-291 81-161 (224)
392 2p5t_B PEZT; postsegregational 79.7 0.65 2.2E-05 39.3 1.6 19 7-25 30-48 (253)
393 1ry6_A Internal kinesin; kines 79.7 0.42 1.4E-05 42.8 0.3 19 8-26 82-102 (360)
394 3fb4_A Adenylate kinase; psych 79.6 0.77 2.6E-05 37.6 2.0 16 11-26 2-17 (216)
395 2vli_A Antibiotic resistance p 79.6 0.63 2.2E-05 36.9 1.4 19 8-26 4-22 (183)
396 3gfo_A Cobalt import ATP-bindi 79.4 0.87 3E-05 39.1 2.3 20 6-25 31-50 (275)
397 2owm_A Nckin3-434, related to 79.4 0.6 2E-05 43.0 1.3 24 3-26 129-154 (443)
398 3dl0_A Adenylate kinase; phosp 79.3 0.79 2.7E-05 37.6 2.0 16 11-26 2-17 (216)
399 2ghi_A Transport protein; mult 79.3 0.9 3.1E-05 38.7 2.4 20 6-25 43-62 (260)
400 2pcj_A ABC transporter, lipopr 79.3 0.85 2.9E-05 37.8 2.1 19 6-24 27-45 (224)
401 2pl3_A Probable ATP-dependent 79.3 4.4 0.00015 33.5 6.7 71 216-291 96-177 (236)
402 1m7g_A Adenylylsulfate kinase; 79.2 0.89 3E-05 37.2 2.2 21 6-26 22-42 (211)
403 1mv5_A LMRA, multidrug resista 79.2 0.84 2.9E-05 38.4 2.1 20 6-25 25-44 (243)
404 2wwf_A Thymidilate kinase, put 79.2 1 3.5E-05 36.6 2.6 20 7-26 8-27 (212)
405 3bor_A Human initiation factor 79.2 4.1 0.00014 33.8 6.4 73 216-291 97-179 (237)
406 2bwj_A Adenylate kinase 5; pho 79.1 0.83 2.8E-05 36.7 2.0 18 8-25 11-28 (199)
407 1e6c_A Shikimate kinase; phosp 79.1 0.91 3.1E-05 35.6 2.2 17 10-26 3-19 (173)
408 2i3b_A HCR-ntpase, human cance 79.0 1.3 4.4E-05 35.6 3.1 41 119-162 103-145 (189)
409 2v6i_A RNA helicase; membrane, 78.9 2.8 9.5E-05 38.6 5.7 54 46-103 171-224 (431)
410 1nn5_A Similar to deoxythymidy 78.9 0.91 3.1E-05 37.0 2.2 20 7-26 7-26 (215)
411 4f4c_A Multidrug resistance pr 78.8 1.5 5E-05 46.8 4.2 32 119-150 570-601 (1321)
412 1wrb_A DJVLGB; RNA helicase, D 78.8 7 0.00024 32.6 7.9 71 217-291 100-180 (253)
413 3be4_A Adenylate kinase; malar 78.8 0.88 3E-05 37.4 2.1 19 8-26 4-22 (217)
414 1nks_A Adenylate kinase; therm 78.7 0.82 2.8E-05 36.5 1.9 15 11-25 3-17 (194)
415 3tqf_A HPR(Ser) kinase; transf 78.6 1.2 4.1E-05 35.1 2.6 20 7-26 14-33 (181)
416 3eph_A TRNA isopentenyltransfe 78.6 1 3.5E-05 40.8 2.6 17 10-26 3-19 (409)
417 3b85_A Phosphate starvation-in 78.6 0.52 1.8E-05 38.6 0.6 22 4-25 17-38 (208)
418 1g6h_A High-affinity branched- 78.5 0.97 3.3E-05 38.4 2.3 20 6-25 30-49 (257)
419 1ji0_A ABC transporter; ATP bi 78.5 0.98 3.4E-05 37.9 2.3 20 6-25 29-48 (240)
420 2jlq_A Serine protease subunit 78.5 5.4 0.00019 36.9 7.6 69 46-126 188-256 (451)
421 3sr0_A Adenylate kinase; phosp 78.5 1.2 4E-05 36.4 2.7 16 11-26 2-17 (206)
422 1cke_A CK, MSSA, protein (cyti 78.4 0.93 3.2E-05 37.4 2.2 18 9-26 5-22 (227)
423 3pxg_A Negative regulator of g 78.4 0.87 3E-05 42.6 2.1 19 8-26 200-218 (468)
424 3gk5_A Uncharacterized rhodane 78.3 1.9 6.5E-05 30.8 3.6 37 216-252 54-90 (108)
425 2bbw_A Adenylate kinase 4, AK4 78.3 1 3.4E-05 37.9 2.3 18 8-25 26-43 (246)
426 1f2t_A RAD50 ABC-ATPase; DNA d 78.3 0.96 3.3E-05 34.7 2.0 15 11-25 25-39 (149)
427 1ak2_A Adenylate kinase isoenz 78.3 1.3 4.4E-05 36.8 3.0 19 8-26 15-33 (233)
428 1hv8_A Putative ATP-dependent 78.0 8.4 0.00029 34.0 8.6 74 45-129 237-314 (367)
429 1vpl_A ABC transporter, ATP-bi 78.0 1 3.6E-05 38.2 2.3 20 6-25 38-57 (256)
430 2d2e_A SUFC protein; ABC-ATPas 78.0 1 3.5E-05 38.0 2.3 20 6-25 26-45 (250)
431 2zu0_C Probable ATP-dependent 78.0 1 3.5E-05 38.4 2.3 20 6-25 43-62 (267)
432 4g1u_C Hemin import ATP-bindin 78.0 1 3.5E-05 38.5 2.3 20 6-25 34-53 (266)
433 2qi9_C Vitamin B12 import ATP- 77.9 1 3.6E-05 38.0 2.3 20 6-25 23-42 (249)
434 1b0u_A Histidine permease; ABC 77.8 1.1 3.6E-05 38.3 2.3 20 6-25 29-48 (262)
435 2ce7_A Cell division protein F 77.7 0.97 3.3E-05 42.2 2.2 17 9-25 49-65 (476)
436 2ixe_A Antigen peptide transpo 77.6 1.1 3.7E-05 38.4 2.4 43 119-161 172-215 (271)
437 4e22_A Cytidylate kinase; P-lo 77.6 1.1 3.6E-05 38.0 2.3 18 8-25 26-43 (252)
438 2nq2_C Hypothetical ABC transp 77.5 1.1 3.7E-05 38.0 2.3 20 6-25 28-47 (253)
439 3tlx_A Adenylate kinase 2; str 77.4 1 3.5E-05 37.9 2.1 19 8-26 28-46 (243)
440 2v3c_C SRP54, signal recogniti 77.4 1.5 5E-05 40.5 3.3 19 10-28 100-118 (432)
441 1qf9_A UMP/CMP kinase, protein 77.3 0.96 3.3E-05 36.1 1.9 17 10-26 7-23 (194)
442 3cmw_A Protein RECA, recombina 77.3 2.2 7.7E-05 46.1 5.0 43 6-57 31-73 (1706)
443 3k1j_A LON protease, ATP-depen 77.3 0.9 3.1E-05 44.0 2.0 21 5-25 56-76 (604)
444 2yz2_A Putative ABC transporte 77.3 1.1 3.8E-05 38.2 2.4 20 6-25 30-49 (266)
445 2xxa_A Signal recognition part 77.3 2.4 8.3E-05 39.0 4.7 19 10-28 101-119 (433)
446 2olj_A Amino acid ABC transpor 77.2 1.1 3.9E-05 38.1 2.3 20 6-25 47-66 (263)
447 3a4m_A L-seryl-tRNA(SEC) kinas 77.0 1 3.6E-05 38.2 2.1 18 9-26 4-21 (260)
448 3cmu_A Protein RECA, recombina 77.0 2.1 7E-05 47.1 4.7 48 6-63 1078-1125(2050)
449 1tf7_A KAIC; homohexamer, hexa 77.0 2 6.9E-05 40.7 4.2 24 5-28 35-58 (525)
450 2ihy_A ABC transporter, ATP-bi 76.8 1.1 3.9E-05 38.4 2.3 20 6-25 44-63 (279)
451 1ukz_A Uridylate kinase; trans 76.8 1.1 3.8E-05 36.2 2.1 16 10-25 16-31 (203)
452 3foj_A Uncharacterized protein 76.7 2 6.9E-05 30.1 3.2 36 216-251 55-90 (100)
453 1jjv_A Dephospho-COA kinase; P 76.7 1.1 3.7E-05 36.4 2.0 15 11-25 4-18 (206)
454 2pt5_A Shikimate kinase, SK; a 76.5 1.1 3.9E-05 34.8 2.0 15 11-25 2-16 (168)
455 2if2_A Dephospho-COA kinase; a 76.5 1.1 3.6E-05 36.4 1.9 15 11-25 3-17 (204)
456 1np6_A Molybdopterin-guanine d 76.3 3.1 0.00011 32.8 4.6 16 10-25 7-22 (174)
457 1e4v_A Adenylate kinase; trans 76.0 1.1 3.7E-05 36.7 1.8 16 11-26 2-17 (214)
458 3ly5_A ATP-dependent RNA helic 75.9 9.4 0.00032 32.2 7.9 72 216-291 125-207 (262)
459 1c9k_A COBU, adenosylcobinamid 75.9 1.6 5.4E-05 34.7 2.7 45 12-69 2-46 (180)
460 3lda_A DNA repair protein RAD5 75.6 2.2 7.7E-05 38.8 4.0 22 6-27 175-196 (400)
461 3kta_A Chromosome segregation 75.6 1.2 3.9E-05 35.4 1.9 15 11-25 28-42 (182)
462 1wv9_A Rhodanese homolog TT165 75.6 2.8 9.6E-05 28.9 3.7 35 218-252 54-88 (94)
463 2jaq_A Deoxyguanosine kinase; 75.5 1.2 4.1E-05 35.9 2.0 15 11-25 2-16 (205)
464 4akg_A Glutathione S-transfera 75.5 0.86 3E-05 51.6 1.4 21 5-25 1263-1283(2695)
465 2oca_A DAR protein, ATP-depend 75.4 25 0.00085 32.8 11.4 75 46-131 348-426 (510)
466 2f1r_A Molybdopterin-guanine d 75.2 1.5 5.2E-05 34.5 2.4 17 10-26 3-19 (171)
467 4dzz_A Plasmid partitioning pr 75.2 6.3 0.00022 31.5 6.4 31 97-131 55-85 (206)
468 3qf7_A RAD50; ABC-ATPase, ATPa 75.2 1.2 4E-05 40.1 2.0 16 11-26 25-40 (365)
469 3eme_A Rhodanese-like domain p 74.8 1.9 6.7E-05 30.4 2.8 36 216-251 55-90 (103)
470 2bbs_A Cystic fibrosis transme 74.7 1.4 4.7E-05 38.2 2.2 20 6-25 61-80 (290)
471 3tbk_A RIG-I helicase domain; 74.5 11 0.00039 35.4 8.9 76 45-127 388-476 (555)
472 1tf7_A KAIC; homohexamer, hexa 74.4 2.8 9.5E-05 39.8 4.5 52 6-67 278-329 (525)
473 2xau_A PRE-mRNA-splicing facto 74.3 16 0.00055 36.4 10.1 76 45-127 302-393 (773)
474 2jeo_A Uridine-cytidine kinase 74.3 1.4 4.7E-05 37.0 2.1 19 7-25 23-41 (245)
475 1gku_B Reverse gyrase, TOP-RG; 74.2 8.9 0.0003 39.8 8.4 74 216-291 98-181 (1054)
476 2pbr_A DTMP kinase, thymidylat 73.9 1.4 4.8E-05 35.1 2.0 16 11-26 2-17 (195)
477 2z0h_A DTMP kinase, thymidylat 73.8 1.4 4.9E-05 35.2 2.0 15 12-26 3-17 (197)
478 2xb4_A Adenylate kinase; ATP-b 73.6 1.4 4.8E-05 36.3 2.0 16 11-26 2-17 (223)
479 3iwh_A Rhodanese-like domain p 73.4 2.3 7.7E-05 30.2 2.8 36 216-251 55-90 (103)
480 4eaq_A DTMP kinase, thymidylat 73.3 1.7 5.8E-05 36.1 2.4 20 6-25 23-42 (229)
481 2dhr_A FTSH; AAA+ protein, hex 72.7 1.6 5.4E-05 41.1 2.2 16 10-25 65-80 (499)
482 3pxi_A Negative regulator of g 72.7 1.4 4.9E-05 43.9 2.1 19 8-26 200-218 (758)
483 1rz3_A Hypothetical protein rb 72.7 1.5 5.2E-05 35.4 1.9 18 8-25 21-38 (201)
484 1svm_A Large T antigen; AAA+ f 72.4 2.3 7.7E-05 38.4 3.1 20 6-25 166-185 (377)
485 1uf9_A TT1252 protein; P-loop, 72.4 1.6 5.3E-05 35.2 1.9 16 10-25 9-24 (203)
486 3hix_A ALR3790 protein; rhodan 72.3 3.6 0.00012 29.2 3.7 36 216-251 51-87 (106)
487 2pjz_A Hypothetical protein ST 72.3 1.7 5.9E-05 37.0 2.2 19 6-25 28-46 (263)
488 3aez_A Pantothenate kinase; tr 72.0 1.7 5.8E-05 38.1 2.2 20 6-25 87-106 (312)
489 1pui_A ENGB, probable GTP-bind 71.7 1.7 5.8E-05 35.2 2.0 20 6-25 23-42 (210)
490 2z83_A Helicase/nucleoside tri 71.6 5.9 0.0002 36.7 5.9 54 46-103 190-243 (459)
491 3qks_A DNA double-strand break 71.6 2.7 9.2E-05 34.1 3.2 24 11-36 25-48 (203)
492 1pzn_A RAD51, DNA repair and r 71.5 2.3 7.9E-05 37.9 3.0 22 6-27 128-149 (349)
493 1vht_A Dephospho-COA kinase; s 71.4 1.8 6E-05 35.5 2.1 17 9-25 4-20 (218)
494 3eiq_A Eukaryotic initiation f 71.3 3.3 0.00011 37.5 4.1 73 45-128 279-355 (414)
495 3d31_A Sulfate/molybdate ABC t 71.2 2.1 7.2E-05 38.1 2.6 43 119-161 143-186 (348)
496 3auy_A DNA double-strand break 71.2 1.9 6.5E-05 38.8 2.4 18 12-34 28-45 (371)
497 1tf5_A Preprotein translocase 70.9 13 0.00044 37.1 8.2 73 213-291 120-209 (844)
498 1z5z_A Helicase of the SNF2/RA 70.4 29 0.001 29.3 9.7 95 17-130 92-192 (271)
499 2q5c_A NTRC family transcripti 70.0 25 0.00086 28.1 8.6 128 217-355 4-136 (196)
500 2fsf_A Preprotein translocase 69.9 12 0.00043 37.2 7.9 57 213-275 111-171 (853)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-57 Score=430.42 Aligned_cols=340 Identities=35% Similarity=0.516 Sum_probs=303.0
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.+++|+|++++||||||||++|++|++..+...... ....++++||++||++|+.|+++++++++...++++..++|
T Consensus 87 i~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~-~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~g 165 (434)
T 2db3_A 87 IPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE-LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYG 165 (434)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC-CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECT
T ss_pred HHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc-cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEEC
Confidence 67788999999999999999999999999998764321 11246789999999999999999999998888889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC--CCCceEEEEee
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI--PRMRQTYLFSA 160 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~--~~~~~~i~~SA 160 (401)
+.....+...+..+++|+|+||++|.+++.... ..+.+++++|+||||++.+.+|...+..++..+ ++.+|++++||
T Consensus 166 g~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SA 244 (434)
T 2db3_A 166 GTSFRHQNECITRGCHVVIATPGRLLDFVDRTF-ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSA 244 (434)
T ss_dssp TSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEES
T ss_pred CCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC-cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEec
Confidence 999888887788889999999999999887754 568899999999999999999999999999875 56789999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhc
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL 240 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 240 (401)
|+++.+..+...++.++..+...........+.+.+..+....+...+..++..... ++||||++++.++.+++.|.+.
T Consensus 245 T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~ 323 (434)
T 2db3_A 245 TFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEK 323 (434)
T ss_dssp CCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhC
Confidence 999999999999999998888877666667788888888888888888888877654 4999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 015759 241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||.|.+..+|+||+||+||.|+.|.++++
T Consensus 324 ~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 324 EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc-ccHHHHHHHHHHhCCCCCCCCC
Q 015759 321 VNQ-YELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 321 ~~~-~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
+++ .+......+.+.+......+|.
T Consensus 404 ~~~~~~~~~~~~l~~~l~~~~~~vp~ 429 (434)
T 2db3_A 404 FDPEKDRAIAADLVKILEGSGQTVPD 429 (434)
T ss_dssp ECTTTCGGGHHHHHHHHHHTTCCCCG
T ss_pred EeccccHHHHHHHHHHHHHcCCCCCH
Confidence 985 4667777777777655555554
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1e-55 Score=415.91 Aligned_cols=338 Identities=31% Similarity=0.540 Sum_probs=305.7
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.+.+++...++.+..+.|
T Consensus 68 i~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 141 (410)
T 2j0s_A 68 IKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV------RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIG 141 (410)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECT
T ss_pred HHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc------CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEEC
Confidence 567889999999999999999999999988764322 56789999999999999999999998888899999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+..+++|+|+||+++.+.+.... +.+..+++||+||+|++.+.++...+..++..+++..|++++|||+
T Consensus 142 ~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 220 (410)
T 2j0s_A 142 GTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS-LRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 220 (410)
T ss_dssp TSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred CCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC-ccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCC
Confidence 988877766666678999999999999887753 5678899999999999999999999999999999899999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCC-hhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
++.+..+...++.++..+...........+.+.+..++... +...+..++.....+++||||++++.++.+++.|.+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (410)
T 2j0s_A 221 PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN 300 (410)
T ss_dssp CHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC
Confidence 99988888888888888877666666667777777776554 77888888888888899999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|++...|+||+||+||.|+.|.+++++
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (410)
T 2j0s_A 301 FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 380 (410)
T ss_dssp CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCCH
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAEE 347 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (401)
++.+...+..++++++..++++|.+.
T Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (410)
T 2j0s_A 381 KNDDIRILRDIEQYYSTQIDEMPMNV 406 (410)
T ss_dssp EGGGHHHHHHHHHHTTCCCEECCSCC
T ss_pred cHHHHHHHHHHHHHhCCCceecccch
Confidence 99999999999999999999888764
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.3e-55 Score=410.65 Aligned_cols=343 Identities=37% Similarity=0.555 Sum_probs=297.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhh------------cCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAEN------------QRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~------------~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
.+|++++|+|+++++|||+|||++|++|++..+...... .....++++||++||++|+.|+++.++++
T Consensus 45 ~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (417)
T 2i4i_A 45 AIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF 124 (417)
T ss_dssp HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHH
Confidence 367788999999999999999999999999988764310 01112367999999999999999999999
Q ss_pred ccCCCceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHh-
Q 015759 70 GSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV- 148 (401)
Q Consensus 70 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~- 148 (401)
+...++++..++|+.........+..+++|+|+||++|.+.+.... +.+..+++||+||+|++.+.+|...+..++..
T Consensus 125 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~ 203 (417)
T 2i4i_A 125 SYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK-IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD 203 (417)
T ss_dssp HTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS-BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSS
T ss_pred hCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC-cChhhCcEEEEEChhHhhccCcHHHHHHHHHhc
Confidence 8878899999999998887777777789999999999999887754 56888999999999999999999999999874
Q ss_pred -CCC--CceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhc-CCCCEEEEe
Q 015759 149 -IPR--MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFT 224 (401)
Q Consensus 149 -~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ivf~ 224 (401)
++. ..|++++|||+++.+..+...++.++..+...........+.+.+..++...+...+..++... .++++||||
T Consensus 204 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~ 283 (417)
T 2i4i_A 204 TMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFV 283 (417)
T ss_dssp SCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred cCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEE
Confidence 333 5789999999999999999999998888777666666677788888888888888888888876 577899999
Q ss_pred cchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHH
Q 015759 225 RTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHR 304 (401)
Q Consensus 225 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~ 304 (401)
++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||
T Consensus 284 ~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr 363 (417)
T 2i4i_A 284 ETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHR 363 (417)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCC
Q 015759 305 VGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 305 ~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
+||+||.|+.|.+++++++.+...+..+.+.+......++.
T Consensus 364 ~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 404 (417)
T 2i4i_A 364 IGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 404 (417)
T ss_dssp HTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred cCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCH
Confidence 99999999999999999999999889998888665554443
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.7e-54 Score=402.21 Aligned_cols=337 Identities=31% Similarity=0.573 Sum_probs=302.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+.+.+++++...++.+..+.|
T Consensus 52 i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g 125 (400)
T 1s2m_A 52 IPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL------NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTG 125 (400)
T ss_dssp HHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECS
T ss_pred HHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc------CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeC
Confidence 566778999999999999999999999988765322 45679999999999999999999998888899999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+...++|+|+||+++.+.+.... ..+.++++||+||+|++.+.++...+..++..+++..|++++|||+
T Consensus 126 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~ 204 (400)
T 1s2m_A 126 GTNLRDDILRLNETVHILVGTPGRVLDLASRKV-ADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATF 204 (400)
T ss_dssp SSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred CcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC-cccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecC
Confidence 988877766777789999999999998877643 4678899999999999999889999999999998889999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCC
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQ 242 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 242 (401)
+..+.......+..+..+..... .....+.+.+..+....+...+..++.....+++||||++++.++.+++.|++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 283 (400)
T 1s2m_A 205 PLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGY 283 (400)
T ss_dssp CHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCC
Confidence 99999888888888876655433 33455667777777778888888888888889999999999999999999999999
Q ss_pred ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 015759 243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN 322 (401)
Q Consensus 243 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~ 322 (401)
.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.|.++++++
T Consensus 284 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~ 363 (400)
T 1s2m_A 284 SCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 363 (400)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEEC
T ss_pred CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhCCCCCCCCCCH
Q 015759 323 QYELEWYLQIEKLIGKKLPEFPAEE 347 (401)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (401)
+.+...+..+++.++..++++|...
T Consensus 364 ~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (400)
T 1s2m_A 364 WNDRFNLYKIEQELGTEIAAIPATI 388 (400)
T ss_dssp GGGHHHHHHHHHHHTCCCEECCSSC
T ss_pred cchHHHHHHHHHHhCCCcccccccc
Confidence 9999999999999999998887653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.8e-55 Score=410.45 Aligned_cols=341 Identities=33% Similarity=0.536 Sum_probs=290.5
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+.+.+++++...++.+....|
T Consensus 71 i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 144 (414)
T 3eiq_A 71 ILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL------KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG 144 (414)
T ss_dssp HHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCC
T ss_pred hHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC------CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEEC
Confidence 567889999999999999999999999998775432 56779999999999999999999998877889999999
Q ss_pred CCChHHHHHHhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 83 GVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 83 ~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
+.........+. ..++|+|+||++|.+.+.... +.+..+++||+||+|++.+.++...+..++..+++..|++++|||
T Consensus 145 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~-~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 145 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY-LSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp CTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS-SCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred CcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 888776665554 578999999999999887744 567889999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC-ChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhc
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNL 240 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 240 (401)
++.........++.++..+...........+.+.+..+... .+...+..++.....+++||||++++.++.+++.|.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~ 303 (414)
T 3eiq_A 224 MPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR 303 (414)
T ss_dssp CCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 99999999999999998887777766677777777776654 47888888888888899999999999999999999999
Q ss_pred CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEE
Q 015759 241 GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISL 320 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~ 320 (401)
++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.++++
T Consensus 304 ~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 383 (414)
T 3eiq_A 304 DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINM 383 (414)
T ss_dssp TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccHHHHHHHHHHhCCCCCCCCCCHHHH
Q 015759 321 VNQYELEWYLQIEKLIGKKLPEFPAEEEEV 350 (401)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (401)
+++.+...+..+++.++..++++|.+..++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 384 VTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp ECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred EcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 999999999999999999999998876554
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.2e-52 Score=392.52 Aligned_cols=337 Identities=31% Similarity=0.515 Sum_probs=296.1
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~~ 81 (401)
++.++.|+++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+.+.++++.... ++++..++
T Consensus 39 i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 112 (391)
T 1xti_A 39 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT------GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFF 112 (391)
T ss_dssp HHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT------TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEEC
T ss_pred HHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC------CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 567788999999999999999999999988764322 45689999999999999999999987665 78999999
Q ss_pred cCCChHHHHHHhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEe
Q 015759 82 GGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
|+.........+. ..++|+|+||+++...+.... +.+.++++||+||+|++.+ .++...+..++...++..|++++|
T Consensus 113 g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 113 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred CCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC-ccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 9987766554443 347999999999999877654 4678999999999999887 478888889999998889999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccc-cccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKY-STVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
||+++........++..+..+...... .....+.+.+..++...+...+..++....++++||||++++.++.+++.|.
T Consensus 192 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~ 271 (391)
T 1xti_A 192 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLV 271 (391)
T ss_dssp SSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHH
Confidence 999999999999998888877665433 3345667777777888888888888888888999999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEE
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAI 318 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i 318 (401)
+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.++
T Consensus 272 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~ 351 (391)
T 1xti_A 272 EQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 351 (391)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccc-cHHHHHHHHHHhCCCCCCCCCC
Q 015759 319 SLVNQY-ELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 319 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
+++++. +...+..+++.++..++++|.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 352 TFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999876 5677888999999988888765
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.2e-52 Score=393.45 Aligned_cols=337 Identities=30% Similarity=0.473 Sum_probs=290.5
Q ss_pred cccccCC--ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEE
Q 015759 3 LWFCDAG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAV 79 (401)
Q Consensus 3 l~~~~~g--~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~ 79 (401)
++.++++ +++++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.++++.... ++.+..
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 129 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 129 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC------CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEE
Confidence 4566666 99999999999999999999998875433 55689999999999999999999987653 577777
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEE
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~ 158 (401)
..++....... ...++|+|+||+++.+++.....+.+.++++||+||+|++.+ .++...+..+...+++..|++++
T Consensus 130 ~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (412)
T 3fht_A 130 AVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 206 (412)
T ss_dssp ECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEE
T ss_pred eecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEE
Confidence 77765543221 345799999999999998776666778999999999999887 67888889999999999999999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l 237 (401)
|||+++.+..+....+..+..+...........+.+.+..++. ..+...+..++....++++||||++++.++.+++.|
T Consensus 207 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L 286 (412)
T 3fht_A 207 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 286 (412)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHH
T ss_pred EeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 9999999999999999999888877776667777777776665 356677777777788899999999999999999999
Q ss_pred HhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC------ChhHHHHHhhhcccC
Q 015759 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIHRVGRTARA 311 (401)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~------s~~~~~Q~~GR~~R~ 311 (401)
.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|+ +..+|+||+||+||.
T Consensus 287 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 366 (412)
T 3fht_A 287 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 366 (412)
T ss_dssp HHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCT
T ss_pred HhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999994 678999999999999
Q ss_pred CCCceEEEEeccc-cHHHHHHHHHHhCCCCCCCCCCHH
Q 015759 312 GRTGVAISLVNQY-ELEWYLQIEKLIGKKLPEFPAEEE 348 (401)
Q Consensus 312 g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 348 (401)
|+.|.+++++++. +...+..+++.++..+..++.+..
T Consensus 367 g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 404 (412)
T 3fht_A 367 GKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDL 404 (412)
T ss_dssp TCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-----
T ss_pred CCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccH
Confidence 9999999999876 488899999999999888876543
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-51 Score=381.00 Aligned_cols=329 Identities=37% Similarity=0.568 Sum_probs=287.7
Q ss_pred cccccCC-ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 3 LWFCDAG-KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g-~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
++.+++| +++++.+|||+|||++|++|++..+... .+.++||++|+++|+.|+.+.+.++....++.+..++
T Consensus 37 i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 109 (367)
T 1hv8_A 37 IPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-------NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIY 109 (367)
T ss_dssp HHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-------SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEEC
T ss_pred HHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-------CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4555666 7999999999999999999888765432 4678999999999999999999999877788899999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.........+. .++|+|+||+++.+.+.... +.+.++++||+||+|++.+.++...+..++..+++..+++++|||
T Consensus 110 ~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 187 (367)
T 1hv8_A 110 GGKAIYPQIKALK-NANIVVGTPGRILDHINRGT-LNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSAT 187 (367)
T ss_dssp TTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC-SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSS
T ss_pred CCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC-cccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeec
Confidence 9887766555444 58999999999999887654 467889999999999999999999999999999888999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
+++........++.++..+..... ..+.+.+..+....+...+..++. ..+.++||||++++.++.+++.|++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~ 262 (367)
T 1hv8_A 188 MPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIG 262 (367)
T ss_dssp CCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 999988888888777655543322 355666777777777777777666 467789999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+.+|.||+||+||.|++|.+++++
T Consensus 263 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 263 FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCC
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
++.+...+..+++.++..+++++.
T Consensus 343 ~~~~~~~~~~i~~~~~~~~~~~~~ 366 (367)
T 1hv8_A 343 NRREYKKLRYIERAMKLKIKKLKF 366 (367)
T ss_dssp CTTSHHHHHHHHHHHTCCCCCBC-
T ss_pred cHHHHHHHHHHHHHhCCCCceecc
Confidence 999999999999999998887653
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=5.1e-54 Score=402.25 Aligned_cols=338 Identities=33% Similarity=0.555 Sum_probs=151.5
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.+|+++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+.+.+.++....++.+..++|
T Consensus 52 i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g 125 (394)
T 1fuu_A 52 IMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG 125 (394)
T ss_dssp HHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECS
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC------CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeC
Confidence 567788999999999999999999999998765432 56789999999999999999999998878899999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+. .++|+|+||+++.+.+.... +.+.++++||+||+|++.+.++...+..++..+++..|++++|||+
T Consensus 126 ~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~-~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 203 (394)
T 1fuu_A 126 GTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 203 (394)
T ss_dssp SCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred CCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC-cchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEec
Confidence 887765544443 58999999999999887654 4678899999999999988899999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC-ChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-YKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
++........++..+..+...........+.+.+..++.. .+...+..++.....+++||||++++.++.+++.|++.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~ 283 (394)
T 1fuu_A 204 PNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK 283 (394)
T ss_dssp CHHHHHHHHHHCCSCEEEEECC----------------------------------------------------------
T ss_pred CHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC
Confidence 9998888888888888887766555555555555544443 356666677777778899999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEe
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLV 321 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~ 321 (401)
+.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|++|.+++++
T Consensus 284 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 284 FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCCCCCCHH
Q 015759 322 NQYELEWYLQIEKLIGKKLPEFPAEEE 348 (401)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (401)
++.+...+..+++.++..++.++.+..
T Consensus 364 ~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 364 TNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ---------------------------
T ss_pred chhHHHHHHHHHHHhCCcccccCcchh
Confidence 999999999999999988887776543
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.5e-51 Score=384.05 Aligned_cols=334 Identities=30% Similarity=0.480 Sum_probs=287.8
Q ss_pred cccccCC--ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 3 LWFCDAG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 3 l~~~~~g--~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
++.++.+ +++++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.+++++...++.+...
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 109 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED------ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLI 109 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC------CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEE
Confidence 4556666 99999999999999999999988765432 567899999999999999999999987778888888
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEe
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
.++...... ...++|+|+||+++.+.+.... ..+.++++||+||+|++.+ .++...+..+...+++..|++++|
T Consensus 110 ~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~-~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 110 VPDSFEKNK----QINAQVIVGTPGTVLDLMRRKL-MQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp STTSSCTTS----CBCCSEEEECHHHHHHHHHTTC-BCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ecCchhhhc----cCCCCEEEEcHHHHHHHHHcCC-cccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 776543221 2368999999999999887643 5688999999999999887 678888999999999899999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
||+++.+..+....+..+..+...........+.+.+..+.. ..+...+..++.....+++||||++++.++.+++.|+
T Consensus 185 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 264 (395)
T 3pey_A 185 ATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLK 264 (395)
T ss_dssp SCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999888888777666666667776666644 3455666677777788999999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC------ChhHHHHHhhhcccCC
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIHRVGRTARAG 312 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~------s~~~~~Q~~GR~~R~g 312 (401)
+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|.|+ ++..|+||+||+||.|
T Consensus 265 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g 344 (395)
T 3pey_A 265 SEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFG 344 (395)
T ss_dssp HTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT
T ss_pred hcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCceEEEEeccc-cHHHHHHHHHHhC-CCCCCCCCCH
Q 015759 313 RTGVAISLVNQY-ELEWYLQIEKLIG-KKLPEFPAEE 347 (401)
Q Consensus 313 ~~g~~i~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 347 (401)
+.|.+++++++. +...+..+++.++ ..+..++.+.
T Consensus 345 ~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 381 (395)
T 3pey_A 345 RKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDD 381 (395)
T ss_dssp CCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSC
T ss_pred CCceEEEEEechHHHHHHHHHHHHhCCceeecCChHH
Confidence 999999999864 5677888888888 6777766543
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=6.1e-51 Score=398.41 Aligned_cols=338 Identities=31% Similarity=0.483 Sum_probs=277.1
Q ss_pred ccccc--CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc----CCCce
Q 015759 3 LWFCD--AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS----GISLR 76 (401)
Q Consensus 3 l~~~~--~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~----~~~i~ 76 (401)
++.++ .|+++++.||||+|||++|++|++..+...... ...+.++||++||++|+.|+++.++++.. ...+.
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 129 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYA 129 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc--ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceE
Confidence 45566 789999999999999999999999988764321 11456899999999999999999998752 23467
Q ss_pred EEEEEcCCChHHHHHHhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-----
Q 015759 77 CAVLVGGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP----- 150 (401)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~----- 150 (401)
+..+.|+.........+. ..++|+|+||++|.+++.......+..+++||+||||++.+++|...+..++..++
T Consensus 130 ~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~ 209 (579)
T 3sqw_A 130 CVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK 209 (579)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS
T ss_pred EEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc
Confidence 888888887766555543 36899999999999988764333577899999999999999999999888877654
Q ss_pred --CCceEEEEeecCchHHHHHHHHhcCCCeEEEeccc----ccccccceEEEEEcCCCCh-h-HHH---HHHHHh-cCCC
Q 015759 151 --RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK----YSTVDTLKQQYRFVPAKYK-D-CYL---VYILTE-VSAS 218 (401)
Q Consensus 151 --~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~-~~l---~~~l~~-~~~~ 218 (401)
...|++++|||+++.+..+...++..+..+..... ......+.+.+...+.... . ..+ ...+.. ..+.
T Consensus 210 ~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 289 (579)
T 3sqw_A 210 SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNY 289 (579)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCC
Confidence 25689999999999999988888888766554322 2223344555555544321 1 222 222222 4678
Q ss_pred CEEEEecchHHHHHHHHHHHhc---CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC
Q 015759 219 STMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 295 (401)
Q Consensus 219 ~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p 295 (401)
++||||+++..++.+++.|++. ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|
T Consensus 290 ~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p 369 (579)
T 3sqw_A 290 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP 369 (579)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred cEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCC
Confidence 9999999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCC
Q 015759 296 TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPE 342 (401)
Q Consensus 296 ~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 342 (401)
.++..|+||+||+||.|+.|.+++++.+.+...+..+++..+..+..
T Consensus 370 ~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~ 416 (579)
T 3sqw_A 370 SELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAK 416 (579)
T ss_dssp SSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCE
T ss_pred CCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999999988776653
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-50 Score=395.65 Aligned_cols=339 Identities=31% Similarity=0.474 Sum_probs=276.2
Q ss_pred ccccc--CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC----CCce
Q 015759 3 LWFCD--AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG----ISLR 76 (401)
Q Consensus 3 l~~~~--~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~----~~i~ 76 (401)
++.++ .|+|++++||||+|||++|++|++..+...... ...+.++||++||++|+.|+++.++++... ..+.
T Consensus 103 i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~--~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 180 (563)
T 3i5x_A 103 IKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD--SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYA 180 (563)
T ss_dssp HHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS--STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc--ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCcee
Confidence 45566 689999999999999999999999998765321 113568999999999999999999986431 2466
Q ss_pred EEEEEcCCChHHHHHHh-CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-----
Q 015759 77 CAVLVGGVDMMQQTLAL-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP----- 150 (401)
Q Consensus 77 ~~~~~~~~~~~~~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~----- 150 (401)
+..+.|+.........+ ..+++|+|+||++|.+++.......+..+++||+||||++.+.+|...+..+...++
T Consensus 181 ~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~ 260 (563)
T 3i5x_A 181 CVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK 260 (563)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS
T ss_pred EEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc
Confidence 78888888766655444 336899999999999988764333577899999999999999999999888877653
Q ss_pred --CCceEEEEeecCchHHHHHHHHhcCCCeEEEeccc----ccccccceEEEEEcCCCCh-hH-HHH---HHHH-hcCCC
Q 015759 151 --RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASK----YSTVDTLKQQYRFVPAKYK-DC-YLV---YILT-EVSAS 218 (401)
Q Consensus 151 --~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~-~l~---~~l~-~~~~~ 218 (401)
...|++++|||+++.+..+...++..+..+..... ......+.+.+...+.... .. .+. ..+. ...+.
T Consensus 261 ~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 340 (563)
T 3i5x_A 261 SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNY 340 (563)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCC
T ss_pred CccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCC
Confidence 35689999999999998888888887766554322 2223344555555544322 11 122 2222 24678
Q ss_pred CEEEEecchHHHHHHHHHHHhc---CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC
Q 015759 219 STMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP 295 (401)
Q Consensus 219 ~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p 295 (401)
++||||+++..++.+++.|++. ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|
T Consensus 341 ~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 341 KAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCC
T ss_pred cEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCC
Confidence 9999999999999999999987 8999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCC
Q 015759 296 TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEF 343 (401)
Q Consensus 296 ~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (401)
.++..|+||+||+||.|+.|.+++++.+.+...+..+++..+..+...
T Consensus 421 ~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~ 468 (563)
T 3i5x_A 421 SELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQ 468 (563)
T ss_dssp SSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEE
T ss_pred CchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcccc
Confidence 999999999999999999999999999999999999999988776543
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.9e-53 Score=405.64 Aligned_cols=336 Identities=30% Similarity=0.476 Sum_probs=143.7
Q ss_pred cccccCC--ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEE
Q 015759 3 LWFCDAG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAV 79 (401)
Q Consensus 3 l~~~~~g--~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~ 79 (401)
++.++.| ++++++||||||||++|++|++..+.... .++++||++|+++|+.|+++.++++.... ++.+..
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~ 196 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEE
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC------CCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 4566665 99999999999999999999998775432 45589999999999999999999887643 566777
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEE
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~ 158 (401)
..++...... ....++|+|+||+++.+++.....+.+.++++||+||+|++.+ .++...+..+...+++.+|++++
T Consensus 197 ~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 197 AVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp ESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEE
T ss_pred EeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEE
Confidence 7666543221 1235789999999999999876667789999999999999887 67888888999999999999999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHH
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALML 237 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l 237 (401)
|||++..+..+...++..+..+...........+.+.+..++. ..+...+..++......++||||+++..++.+++.|
T Consensus 274 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L 353 (479)
T 3fmp_B 274 SATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAEL 353 (479)
T ss_dssp ESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHH
Confidence 9999999999999999998888877766666667676666654 456666667777777889999999999999999999
Q ss_pred HhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC------ChhHHHHHhhhcccC
Q 015759 238 RNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT------NSKDYIHRVGRTARA 311 (401)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~------s~~~~~Q~~GR~~R~ 311 (401)
...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|. +...|+||+||+||.
T Consensus 354 ~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 354 SKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999995 568999999999999
Q ss_pred CCCceEEEEecccc-HHHHHHHHHHhCCCCCCCCCCH
Q 015759 312 GRTGVAISLVNQYE-LEWYLQIEKLIGKKLPEFPAEE 347 (401)
Q Consensus 312 g~~g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 347 (401)
|+.|.+++++++.+ ...+..+++.++..+..++.+.
T Consensus 434 g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 470 (479)
T 3fmp_B 434 GKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDD 470 (479)
T ss_dssp -------------------------------------
T ss_pred CCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCcc
Confidence 99999999998764 7888889999988888776654
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.1e-50 Score=367.20 Aligned_cols=312 Identities=35% Similarity=0.548 Sum_probs=266.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.+|+++++.+|||+|||++|++|++. .+.++||++|+++|+.|+++.+++++...++.+..++|
T Consensus 25 i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~------------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 25 IPLMLQGKNVVVRAKTGSGKTAAYAIPILE------------LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG 92 (337)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHH------------HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT
T ss_pred HHHHhcCCCEEEEcCCCCcHHHHHHHHHHh------------hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC
Confidence 567788999999999999999999988775 24569999999999999999999998878889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+.. ++|+|+||+++.+.+.... +.+.++++||+||+|++.+.++...+..++...+...+++++|||+
T Consensus 93 ~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~ 170 (337)
T 2z0m_A 93 GMPYKAQINRVRN-ADIVVATPGRLLDLWSKGV-IDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATI 170 (337)
T ss_dssp TSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTS-CCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred CcchHHHHhhcCC-CCEEEECHHHHHHHHHcCC-cchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcC
Confidence 9887666655554 8999999999999877643 4678899999999999999999999999999999889999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCC
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQ 242 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 242 (401)
++........++.++..+... .....+.+.+..++...+.. ...+....+.++||||++++.++.+++.|.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~---- 241 (337)
T 2z0m_A 171 PEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSK--VQALRENKDKGVIVFVRTRNRVAKLVRLFD---- 241 (337)
T ss_dssp CHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHH--HHHHHTCCCSSEEEECSCHHHHHHHHTTCT----
T ss_pred CHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHH--HHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----
Confidence 999988888888877766433 23344555566665554332 355666788999999999999999999886
Q ss_pred ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 015759 243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVN 322 (401)
Q Consensus 243 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~ 322 (401)
.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|.||+||+||.|++|.+++++.
T Consensus 242 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 242 NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhCC
Q 015759 323 QYELEWYLQIEKLIGK 338 (401)
Q Consensus 323 ~~~~~~~~~~~~~~~~ 338 (401)
.+...+..+++.++.
T Consensus 322 -~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 322 -NEYWLEKEVKKVSQK 336 (337)
T ss_dssp -SCHHHHHHHC-----
T ss_pred -CcHHHHHHHHHHhcc
Confidence 888888888776643
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-50 Score=388.84 Aligned_cols=335 Identities=29% Similarity=0.478 Sum_probs=252.6
Q ss_pred cccccCC--ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 3 LWFCDAG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 3 l~~~~~g--~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
++.+++| +++++.+|||+|||++|+++++..+.... .+.++||++|+++|+.|+.+++++++...++.+...
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~------~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~ 223 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV------PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFG 223 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC------CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC------CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEE
Confidence 4566776 99999999999999999999998875432 466899999999999999999999987666666655
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEe
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
.++..... ....++|+|+||+++.+.+.... +.+.++++||+||+|++.+ .++...+..+...+++..|++++|
T Consensus 224 ~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~-~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lS 298 (508)
T 3fho_A 224 IKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQ-LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS 298 (508)
T ss_dssp -------------CCCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEE
T ss_pred eCCccccc----ccCCCCEEEECHHHHHHHHHcCC-ccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEe
Confidence 55433221 22368999999999999887644 5688999999999999887 678889999999999899999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHH
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
||+++.+..+...+...+..+...........+.+.+..... ..+...+..++....++++||||++++.++.+++.|.
T Consensus 299 AT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~ 378 (508)
T 3fho_A 299 ATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMT 378 (508)
T ss_dssp SCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHT
T ss_pred CCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHH
Confidence 999999999999999888887776666555666666666543 4466667777777788999999999999999999999
Q ss_pred hcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC------CChhHHHHHhhhcccCC
Q 015759 239 NLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP------TNSKDYIHRVGRTARAG 312 (401)
Q Consensus 239 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p------~s~~~~~Q~~GR~~R~g 312 (401)
+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+++.| .+...|+||+||+||.|
T Consensus 379 ~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g 458 (508)
T 3fho_A 379 ADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG 458 (508)
T ss_dssp TTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC---
T ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred CCceEEEEecc-ccHHHHHHHHHHhCCCCCCCCCCHH
Q 015759 313 RTGVAISLVNQ-YELEWYLQIEKLIGKKLPEFPAEEE 348 (401)
Q Consensus 313 ~~g~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (401)
+.|.+++++.+ .+...+..+++.++..+..++.++.
T Consensus 459 ~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~~ 495 (508)
T 3fho_A 459 RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDY 495 (508)
T ss_dssp --CEEEEEECTTTSSSSHHHHHHHSCCCCC-------
T ss_pred CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCccH
Confidence 99999999984 5677888999999999998887653
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.6e-50 Score=376.43 Aligned_cols=334 Identities=20% Similarity=0.226 Sum_probs=263.2
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.++.+++|+|+++++|||+|||++|+++++..+. .+.++||++||++|+.|+++.+++++. .++++..++
T Consensus 29 ~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~ 98 (414)
T 3oiy_A 29 WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFY 98 (414)
T ss_dssp HHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECC
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---------CCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEE
Confidence 3577889999999999999999999888777652 677899999999999999999999887 789999999
Q ss_pred cCCCh---HHHHHHhCC-CCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-----------cccHHH-HHHH
Q 015759 82 GGVDM---MQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-----------DDFEKS-LDEI 145 (401)
Q Consensus 82 ~~~~~---~~~~~~~~~-~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~~-~~~i 145 (401)
|+.+. ......+.. .++|+|+||+++.+++.. +.+.++++||+||+|++.. .+|... +..+
T Consensus 99 g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 99 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 99887 333444433 389999999999887764 4567899999999997653 455555 7777
Q ss_pred HHhCC-----------CCceEEEEeec-CchHHH-HHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHH
Q 015759 146 LNVIP-----------RMRQTYLFSAT-MTKKVK-KLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 212 (401)
Q Consensus 146 ~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 212 (401)
+..++ ...|++++||| .+..+. .+...... +...........+.+.+... .+...+..++
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~l 248 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKLVELL 248 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS---CCHHHHHHHH
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc---CHHHHHHHHH
Confidence 77765 77899999999 454433 22232222 12222233344555555444 3555566666
Q ss_pred HhcCCCCEEEEecchHHHHHHHHHHHhcCCceE-eecCCCCHHHHHHHHhhccCCCceEEEE----cCCCCCCCCCCC-C
Q 015759 213 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAI-PISGHMSQSKRLGALNKFKAGECNILIC----TDVASRGLDIPS-V 286 (401)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vLv~----T~~~~~Gid~~~-~ 286 (401)
.. .+.++||||+++..++.+++.|++.|+.+. .+||+ +|. ++.|++|+++|||| |+++++|+|+|+ +
T Consensus 249 ~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v 321 (414)
T 3oiy_A 249 EI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERI 321 (414)
T ss_dssp HH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTC
T ss_pred HH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCcccccc
Confidence 66 458999999999999999999999999998 88985 344 99999999999999 999999999999 9
Q ss_pred CEEEEecCC--CChhHHHHHhhhcccCC----CCceEEEEeccccHHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHHH
Q 015759 287 DMVINYDIP--TNSKDYIHRVGRTARAG----RTGVAISLVNQYELEWYLQIEKLIG--KKLPEFPAEEEEVLLLLERVT 358 (401)
Q Consensus 287 ~~vi~~~~p--~s~~~~~Q~~GR~~R~g----~~g~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 358 (401)
++||+||.| .+..+|+||+||+||.| +.|.+++++ .+...+..+++.++ ..++..+.+..++...++++.
T Consensus 322 ~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3oiy_A 322 KYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVE 399 (414)
T ss_dssp CEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEGGGCCHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccccccccHHHHHHHHH
Confidence 999999999 99999999999999988 478999998 67778888888888 777777776666666666665
Q ss_pred HHhhhh
Q 015759 359 EAKRIS 364 (401)
Q Consensus 359 ~~~~~~ 364 (401)
..++..
T Consensus 400 ~~r~~~ 405 (414)
T 3oiy_A 400 ESRRRS 405 (414)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555433
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-47 Score=371.50 Aligned_cols=307 Identities=17% Similarity=0.213 Sum_probs=241.5
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++++++|+|+++.+|||+|||++|++|++. ...++||++|+++|+.|+.+.+.++ ++.+..++
T Consensus 52 ~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------------~~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~ 115 (591)
T 2v1x_A 52 TINVTMAGKEVFLVMPTGGGKSLCYQLPALC------------SDGFTLVICPLISLMEDQLMVLKQL----GISATMLN 115 (591)
T ss_dssp HHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------------SSSEEEEECSCHHHHHHHHHHHHHH----TCCEEECC
T ss_pred HHHHHHcCCCEEEEECCCChHHHHHHHHHHH------------cCCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEe
Confidence 4677889999999999999999999999875 3457999999999999999999987 47888888
Q ss_pred cCCChHHHHHH------hCCCCCEEEECchHHH------HHHhcCCCCCCCCccEEEEcchhhccccc--cHHHHHH---
Q 015759 82 GGVDMMQQTLA------LGKRPHIVVATPGRLM------DHLTNTKGFSLGTLKYLVLDEADRLLNDD--FEKSLDE--- 144 (401)
Q Consensus 82 ~~~~~~~~~~~------~~~~~~Iii~T~~~l~------~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~--- 144 (401)
|+......... ....++|+|+||++|. +.+.. ...+..+++|||||||++..++ |++.+..
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~ 193 (591)
T 2v1x_A 116 ASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGI 193 (591)
T ss_dssp SSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGH
T ss_pred CCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCcEEEEECcccccccccccHHHHHHHHH
Confidence 88776544322 2457899999999874 22222 1246689999999999998765 6555443
Q ss_pred HHHhCCCCceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCC-C---hhHHHHHHHH-hcCCCC
Q 015759 145 ILNVIPRMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAK-Y---KDCYLVYILT-EVSASS 219 (401)
Q Consensus 145 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~l~-~~~~~~ 219 (401)
+...++ ..+++++|||+++.+.......+..+........ ....++ .+...... . +...+..++. ...+.+
T Consensus 194 l~~~~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl--~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~ 269 (591)
T 2v1x_A 194 LKRQFP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNL--YYEVRQKPSNTEDFIEDIVKLINGRYKGQS 269 (591)
T ss_dssp HHHHCT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTE--EEEEEECCSSHHHHHHHHHHHHTTTTTTCE
T ss_pred HHHhCC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCccc--EEEEEeCCCcHHHHHHHHHHHHHHhccCCC
Confidence 334444 5789999999999887777766654432222211 111222 22222221 2 2233444444 336789
Q ss_pred EEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChh
Q 015759 220 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSK 299 (401)
Q Consensus 220 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~ 299 (401)
+||||++++.++.+++.|.+.|+.+..+|++|+..+|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|.+
T Consensus 270 ~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~ 349 (591)
T 2v1x_A 270 GIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSME 349 (591)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHH
T ss_pred eEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCceEEEEeccccHHHHH
Q 015759 300 DYIHRVGRTARAGRTGVAISLVNQYELEWYL 330 (401)
Q Consensus 300 ~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~ 330 (401)
.|+|++||+||.|++|.|++++.+.|...+.
T Consensus 350 ~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 350 NYYQESGRAGRDDMKADCILYYGFGDIFRIS 380 (591)
T ss_dssp HHHHHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred HHHHHhccCCcCCCCceEEEEEChHHHHHHH
Confidence 9999999999999999999999887755443
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.7e-47 Score=362.23 Aligned_cols=309 Identities=20% Similarity=0.246 Sum_probs=245.3
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++++++|+|+++.+|||+|||++|++|++. ....+||++|+++|+.|+.+.++.+ ++.+..++
T Consensus 33 ~i~~il~g~d~lv~apTGsGKTl~~~lp~l~------------~~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~ 96 (523)
T 1oyw_A 33 IIDTVLSGRDCLVVMPTGGGKSLCYQIPALL------------LNGLTVVVSPLISLMKDQVDQLQAN----GVAAACLN 96 (523)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHH------------SSSEEEEECSCHHHHHHHHHHHHHT----TCCEEEEC
T ss_pred HHHHHHcCCCEEEECCCCcHHHHHHHHHHHH------------hCCCEEEECChHHHHHHHHHHHHHc----CCcEEEEe
Confidence 3567889999999999999999999999874 3456899999999999999999986 47788888
Q ss_pred cCCChHHHHH----HhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc--cHHHHH---HHHHhCCCC
Q 015759 82 GGVDMMQQTL----ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD--FEKSLD---EILNVIPRM 152 (401)
Q Consensus 82 ~~~~~~~~~~----~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~---~i~~~~~~~ 152 (401)
++.+...... ......+|+++||+++....... .+...++++|||||+|++.+++ |++.+. .+...++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~-~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~- 174 (523)
T 1oyw_A 97 STQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE-HLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPT- 174 (523)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH-HHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH-HHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCC-
Confidence 8776544322 22346899999999985221110 1234678999999999998755 555544 34555554
Q ss_pred ceEEEEeecCchHHHHHHHHhc--CCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHH
Q 015759 153 RQTYLFSATMTKKVKKLQRACL--KNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDAT 230 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~ 230 (401)
.+++++|||+++.........+ .++..+. .... ..+ ..+...+...+...+...+....+.++||||++++.+
T Consensus 175 ~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~--r~~--l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~ 249 (523)
T 1oyw_A 175 LPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFD--RPN--IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKV 249 (523)
T ss_dssp SCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCC--CTT--EEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCC--CCc--eEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHH
Confidence 6799999999987665443333 3443332 2111 122 2344455566677777778777888999999999999
Q ss_pred HHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhccc
Q 015759 231 RLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTAR 310 (401)
Q Consensus 231 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R 310 (401)
+.+++.|++.|+.+..+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++||+++.|.|.+.|.|++||+||
T Consensus 250 e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR 329 (523)
T 1oyw_A 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (523)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeccccHHHHHHHH
Q 015759 311 AGRTGVAISLVNQYELEWYLQIE 333 (401)
Q Consensus 311 ~g~~g~~i~~~~~~~~~~~~~~~ 333 (401)
.|++|.+++++++.|....+.+.
T Consensus 330 ~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 330 DGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp TSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999888766555443
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.3e-45 Score=357.72 Aligned_cols=318 Identities=20% Similarity=0.193 Sum_probs=190.1
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++++|||+|||++|++|++..+..... ..+.++||++|+++|+.||.+.+.++....++++..++|
T Consensus 16 i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g 91 (556)
T 4a2p_A 16 AQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG 91 (556)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCC
T ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc----cCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeC
Confidence 5677889999999999999999999999888765321 126789999999999999999999998777889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHH-HHHHHh-C---CCCceEEE
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSL-DEILNV-I---PRMRQTYL 157 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~-~~i~~~-~---~~~~~~i~ 157 (401)
+.........+..+++|+|+||++|.+.+.......+..+++||+||||++.+.+....+ ..++.. + ++..++++
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (556)
T 4a2p_A 92 ENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILG 171 (556)
T ss_dssp C-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEE
T ss_pred CCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEE
Confidence 886655554554568999999999999887755336889999999999999876543332 233222 1 34578999
Q ss_pred EeecCch-----------HHHHHHHHhcCCCeEEEecccc-----cccccceEEEEEcC---------------------
Q 015759 158 FSATMTK-----------KVKKLQRACLKNPVKIEAASKY-----STVDTLKQQYRFVP--------------------- 200 (401)
Q Consensus 158 ~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------------------- 200 (401)
+|||++. .+..+..... ...+...... .........+..+.
T Consensus 172 lSAT~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (556)
T 4a2p_A 172 LTASVGVGNAKNIEETIEHICSLCSYLD--IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEAL 249 (556)
T ss_dssp EESCCCCTTCSSHHHHHHHHHHHHHHHT--CSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCcccCchhhHHHHHHHHHHHHHhcC--CeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHH
Confidence 9999942 1112222111 0111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015759 201 -------------------------------------------------------------------------------- 200 (401)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (401)
T Consensus 250 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 329 (556)
T 4a2p_A 250 MRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSY 329 (556)
T ss_dssp HHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence
Q ss_pred ----------------------------------------CCChhHHHHHHHHh----cCCCCEEEEecchHHHHHHHHH
Q 015759 201 ----------------------------------------AKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALM 236 (401)
Q Consensus 201 ----------------------------------------~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~ 236 (401)
...|...+..++.. ..+.++||||+++..++.+++.
T Consensus 330 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~ 409 (556)
T 4a2p_A 330 LTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKC 409 (556)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHH
Confidence 12233334444433 4678999999999999999999
Q ss_pred HHhc------------CCceEeecCCCCHHHHHHHHhhccC-CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHH
Q 015759 237 LRNL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIH 303 (401)
Q Consensus 237 l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q 303 (401)
|++. |.....+||+|+..+|.+++++|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+|
T Consensus 410 L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Q 489 (556)
T 4a2p_A 410 MEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQ 489 (556)
T ss_dssp HTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHH
T ss_pred HHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHH
Confidence 9876 5556667888999999999999999 99999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCceEEEEeccccHHH
Q 015759 304 RVGRTARAGRTGVAISLVNQYELEW 328 (401)
Q Consensus 304 ~~GR~~R~g~~g~~i~~~~~~~~~~ 328 (401)
|+|| ||. +.|.+++++...+.+.
T Consensus 490 r~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 490 VRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp C----------CCEEEEESCHHHHH
T ss_pred hcCC-CCC-CCceEEEEEeCcchHH
Confidence 9999 998 7899999998876543
No 20
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.6e-45 Score=359.92 Aligned_cols=322 Identities=22% Similarity=0.211 Sum_probs=217.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+++++++|||+|||++|++|++..+..... ..+.++||++|+++|+.||.+.+.+++...++++..++|
T Consensus 13 i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g 88 (555)
T 3tbk_A 13 ALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC----GQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISG 88 (555)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred HHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----CCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcC
Confidence 5677899999999999999999999999988765321 126789999999999999999999998877899999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhC-----CCCceEE
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVI-----PRMRQTY 156 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~-----~~~~~~i 156 (401)
+.........+..+++|+|+||+++.+.+.......+.++++||+||||++.+.+ +...+...+... .+..+++
T Consensus 89 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (555)
T 3tbk_A 89 ATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVV 168 (555)
T ss_dssp TTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEE
T ss_pred CCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEE
Confidence 9876555444445689999999999998877553367889999999999988754 333333333332 2446899
Q ss_pred EEeecCchH-----------HHHHHHHhcCCCeEEEecccc-----cccccceEEEEEcC--------------------
Q 015759 157 LFSATMTKK-----------VKKLQRACLKNPVKIEAASKY-----STVDTLKQQYRFVP-------------------- 200 (401)
Q Consensus 157 ~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-------------------- 200 (401)
++|||+... +..+... +.. ..+...... .........+..+.
T Consensus 169 ~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (555)
T 3tbk_A 169 GLTASVGVGDAKTAEEAMQHICKLCAA-LDA-SVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEK 246 (555)
T ss_dssp EEESCCCCTTCCSHHHHHHHHHHHHHH-TTC-SEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHH
T ss_pred EEecCcccCccccHHHHHHHHHHHHHh-cCC-eeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHH
Confidence 999999531 1111111 111 111111000 00000000010000
Q ss_pred --------------------------------------------------------------------------------
Q 015759 201 -------------------------------------------------------------------------------- 200 (401)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (401)
T Consensus 247 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 326 (555)
T 3tbk_A 247 LAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDAL 326 (555)
T ss_dssp HHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence
Q ss_pred ------------------------------------------CCChhHHHHHHHHh----cCCCCEEEEecchHHHHHHH
Q 015759 201 ------------------------------------------AKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLA 234 (401)
Q Consensus 201 ------------------------------------------~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~ 234 (401)
...|...+..++.. ..+.++||||+++..++.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~ 406 (555)
T 3tbk_A 327 NYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALK 406 (555)
T ss_dssp HHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHH
Confidence 12233334444433 35689999999999999999
Q ss_pred HHHHhcC------------CceEeecCCCCHHHHHHHHhhccC-CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHH
Q 015759 235 LMLRNLG------------QRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDY 301 (401)
Q Consensus 235 ~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~ 301 (401)
+.|...+ .....+||+|+..+|.+++++|++ |+++|||||+++++|+|+|++++||+||+|+|+..|
T Consensus 407 ~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~ 486 (555)
T 3tbk_A 407 KWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKM 486 (555)
T ss_dssp HHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCE
T ss_pred HHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHH
Confidence 9999874 344555669999999999999999 999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCceEEEEeccccHHHHHHH
Q 015759 302 IHRVGRTARAGRTGVAISLVNQYELEWYLQI 332 (401)
Q Consensus 302 ~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~ 332 (401)
+||+|| ||. +.|.+++++.+.+......+
T Consensus 487 ~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 487 IQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp ECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999 998 78999999998876655444
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.5e-45 Score=376.91 Aligned_cols=331 Identities=19% Similarity=0.213 Sum_probs=254.2
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.++.+++|+|++++||||||||++|+++++..+. .+.++||++||++|+.|+++.+++++ ..++++..++
T Consensus 86 ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---------~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~ 155 (1104)
T 4ddu_A 86 WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---------KGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFY 155 (1104)
T ss_dssp HHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---------TTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEEC
T ss_pred HHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---------cCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEe
Confidence 3677889999999999999999988887776652 67789999999999999999999987 6789999999
Q ss_pred cCCCh---HHHHHHhCC-CCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-----------cccHHH-HHHH
Q 015759 82 GGVDM---MQQTLALGK-RPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-----------DDFEKS-LDEI 145 (401)
Q Consensus 82 ~~~~~---~~~~~~~~~-~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-----------~~~~~~-~~~i 145 (401)
|+.+. ......+.. .++|+|+||++|.+++.. +.+.++++||+||+|++.. .+|... +..+
T Consensus 156 Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 156 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp TTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 99887 444455544 499999999999887764 4577899999999987654 566666 7788
Q ss_pred HHhCC-----------CCceEEEEeec-CchHHHH-HHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHH
Q 015759 146 LNVIP-----------RMRQTYLFSAT-MTKKVKK-LQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYIL 212 (401)
Q Consensus 146 ~~~~~-----------~~~~~i~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 212 (401)
+..++ +..|++++||| .+..+.. +....+. +...........+.+.+..+ .+...+..++
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~k~~~L~~ll 305 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---RSKEKLVELL 305 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---CCHHHHHHHH
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---CHHHHHHHHH
Confidence 88776 77899999999 4544332 2222222 22233333445566666544 3555666666
Q ss_pred HhcCCCCEEEEecchHHHHHHHHHHHhcCCceE-eecCCCCHHHHHHHHhhccCCCceEEEE----cCCCCCCCCCCC-C
Q 015759 213 TEVSASSTMVFTRTCDATRLLALMLRNLGQRAI-PISGHMSQSKRLGALNKFKAGECNILIC----TDVASRGLDIPS-V 286 (401)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vLv~----T~~~~~Gid~~~-~ 286 (401)
.. .++++||||++++.++.+++.|+..|+.+. .+||+ |.+ ++.|++|+.+|||| |+++++|+|+|+ +
T Consensus 306 ~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V 378 (1104)
T 4ddu_A 306 EI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERI 378 (1104)
T ss_dssp HH-HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTC
T ss_pred Hh-cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCC
Confidence 66 358999999999999999999999999998 99993 555 99999999999999 999999999999 9
Q ss_pred CEEEEecCCC----------------------------------------------------------------------
Q 015759 287 DMVINYDIPT---------------------------------------------------------------------- 296 (401)
Q Consensus 287 ~~vi~~~~p~---------------------------------------------------------------------- 296 (401)
++||+||.|.
T Consensus 379 ~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~ 458 (1104)
T 4ddu_A 379 KYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELI 458 (1104)
T ss_dssp CEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEE
T ss_pred CEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEE
Confidence 9999999998
Q ss_pred --ChhHHHHHhhhcccCCCCc--eEEEEeccccHHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHHHH
Q 015759 297 --NSKDYIHRVGRTARAGRTG--VAISLVNQYELEWYLQIEKLIG--KKLPEFPAEEEEVLLLLERVTE 359 (401)
Q Consensus 297 --s~~~~~Q~~GR~~R~g~~g--~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 359 (401)
++.+|+||+||+||.|..| .+++++..+|...+..+++.++ ..++..+.+..++..+++++..
T Consensus 459 ~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 527 (1104)
T 4ddu_A 459 IPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEE 527 (1104)
T ss_dssp EECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHHHH
T ss_pred ecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCHHHHHHHHhH
Confidence 7789999999999976432 3444444477778888887775 3455444444444444444433
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.4e-45 Score=369.17 Aligned_cols=338 Identities=22% Similarity=0.228 Sum_probs=215.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++.++.|+|+|+++|||+|||++|++|++..+..... ..+.++||++||++|+.|+.+.+++++...++++..++
T Consensus 21 ~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~ 96 (696)
T 2ykg_A 21 LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ----GQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGIS 96 (696)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT----TCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEEC
T ss_pred HHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc----CCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEe
Confidence 35677889999999999999999999999987765321 12367999999999999999999999877789999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHh-----CCCCceE
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNV-----IPRMRQT 155 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~-----~~~~~~~ 155 (401)
|+.........+...++|+|+||++|.+.+.......+..+++|||||||++.... +...+...+.. .++..++
T Consensus 97 g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~i 176 (696)
T 2ykg_A 97 GATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQV 176 (696)
T ss_dssp SSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEE
T ss_pred CCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeE
Confidence 98765444444444689999999999998887543257889999999999987643 23333333332 2456789
Q ss_pred EEEeecCc--------hHHHHHHHHh---------------------cCCCeEEEeccccccc-----------------
Q 015759 156 YLFSATMT--------KKVKKLQRAC---------------------LKNPVKIEAASKYSTV----------------- 189 (401)
Q Consensus 156 i~~SAT~~--------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~----------------- 189 (401)
+++|||+. ..+..+.... ...|............
T Consensus 177 l~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l 256 (696)
T 2ykg_A 177 IGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESL 256 (696)
T ss_dssp EEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHH
Confidence 99999996 1122221111 1112111000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015759 190 -------------------------------------------------------------------------------- 189 (401)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (401)
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~ 336 (696)
T 2ykg_A 257 AKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALD 336 (696)
T ss_dssp HHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHH
Confidence
Q ss_pred --------------ccceEEEEE-------------c---CCCChhHHHHHHHHhc----CCCCEEEEecchHHHHHHHH
Q 015759 190 --------------DTLKQQYRF-------------V---PAKYKDCYLVYILTEV----SASSTMVFTRTCDATRLLAL 235 (401)
Q Consensus 190 --------------~~~~~~~~~-------------~---~~~~~~~~l~~~l~~~----~~~~~ivf~~~~~~~~~l~~ 235 (401)
..+.+.+.. . ....+...+..++... .++++||||+++..++.+++
T Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~ 416 (696)
T 2ykg_A 337 YLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKN 416 (696)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHH
Confidence 000000000 0 1233555566666554 67899999999999999999
Q ss_pred HHHhcC----CceEee--------cCCCCHHHHHHHHhhccC-CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHH
Q 015759 236 MLRNLG----QRAIPI--------SGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYI 302 (401)
Q Consensus 236 ~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~ 302 (401)
.|++.+ +.+..+ |++|+..+|.+++++|++ |+.+|||||+++++|+|+|++++||+||+|+++..|+
T Consensus 417 ~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~ 496 (696)
T 2ykg_A 417 WIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMI 496 (696)
T ss_dssp HHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-
T ss_pred HHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHH
Confidence 999988 788888 559999999999999998 9999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCceEEEEeccccHHHHHHH----HHHhCCCCCCCCC
Q 015759 303 HRVGRTARAGRTGVAISLVNQYELEWYLQI----EKLIGKKLPEFPA 345 (401)
Q Consensus 303 Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 345 (401)
||+|| ||. +.|.++.++...+......+ ++.+...+++++.
T Consensus 497 Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 497 QTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp ----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred Hhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999 997 68999999988776555554 4455444444433
No 23
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-43 Score=340.17 Aligned_cols=313 Identities=23% Similarity=0.258 Sum_probs=235.5
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.++ ++++.+|||+|||++++.+++..+.. .+.++||++|+++|+.||.+++.++....+..+..++|
T Consensus 18 i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g 88 (494)
T 1wp9_A 18 YAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--------YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTG 88 (494)
T ss_dssp HHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--------SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECS
T ss_pred HHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeC
Confidence 3456667 99999999999999999988877652 56789999999999999999999987544568888998
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+ ..++|+|+||+++.+.+.... +.+.++++||+||||++.+......+...+....+..+++++|||+
T Consensus 89 ~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp 166 (494)
T 1wp9_A 89 EKSPEERSKAW-ARAKVIVATPQTIENDLLAGR-ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP 166 (494)
T ss_dssp CSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTS-CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCS
T ss_pred Ccchhhhhhhc-cCCCEEEecHHHHHHHHhcCC-cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCC
Confidence 87765443332 358999999999999877643 4678899999999999876544444445555455667899999999
Q ss_pred chH---HHHHHHHhcCCCeEEEeccccccc---ccceEEEEEc-------------------------------------
Q 015759 163 TKK---VKKLQRACLKNPVKIEAASKYSTV---DTLKQQYRFV------------------------------------- 199 (401)
Q Consensus 163 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------------------------------------- 199 (401)
... +..+.................... ......+...
T Consensus 167 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (494)
T 1wp9_A 167 GSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDI 246 (494)
T ss_dssp CSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTS
T ss_pred CCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCc
Confidence 743 333333322211111110000000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015759 200 -------------------------------------------------------------------------------- 199 (401)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (401)
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (494)
T 1wp9_A 247 PKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMK 326 (494)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHH
T ss_pred chhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHH
Confidence
Q ss_pred -------------CCCChhHHHHHHHHh----cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecC--------CCCHH
Q 015759 200 -------------PAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISG--------HMSQS 254 (401)
Q Consensus 200 -------------~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~~~ 254 (401)
....|...+..++.. ..+.++||||+++..++.+++.|.+.|+.+..+|| +++..
T Consensus 327 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (494)
T 1wp9_A 327 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQR 406 (494)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CC
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHH
Confidence 122244445555554 47899999999999999999999999999999999 99999
Q ss_pred HHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHH
Q 015759 255 KRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELE 327 (401)
Q Consensus 255 ~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~ 327 (401)
+|.+++++|++|+++|||||+++++|+|+|++++||++|+|+++..|.||+||+||.|+ |.++.++.+.+.+
T Consensus 407 ~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 407 EQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp HHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred HHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 99999999999999999999999999999999999999999999999999999999997 9999999887644
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-44 Score=366.85 Aligned_cols=308 Identities=18% Similarity=0.193 Sum_probs=238.3
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
.++++.+|++++++||||||||++|++|++..+. .+.+++|++|+++|+.|+++.+.++.. .+..++
T Consensus 192 AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~---------~g~rvlvl~PtraLa~Q~~~~l~~~~~----~Vgllt 258 (1108)
T 3l9o_A 192 AISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMT 258 (1108)
T ss_dssp HHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEEC
T ss_pred HHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh---------cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEe
Confidence 3677889999999999999999999999998774 577899999999999999999999764 566677
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.+. ..+++|+|+||++|.+.+.... ..+.++++|||||+|++.+.+++..+..++..+++..|+++||||
T Consensus 259 Gd~~~-------~~~~~IlV~Tpe~L~~~L~~~~-~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSAT 330 (1108)
T 3l9o_A 259 GDITI-------NPDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSAT 330 (1108)
T ss_dssp SSCBC-------CCSCSEEEEEHHHHHHHHHHCS-SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECS
T ss_pred Ccccc-------CCCCCEEEeChHHHHHHHHcCc-cccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCC
Confidence 87653 2458999999999999888754 357789999999999999999999999999999999999999999
Q ss_pred CchH--HHHHHHHhcCCCeEEEecccccccccceEEEEEcC---------C-----------------------------
Q 015759 162 MTKK--VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP---------A----------------------------- 201 (401)
Q Consensus 162 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----------------------------- 201 (401)
+++. +..........+..+....... ..+.+++.... .
T Consensus 331 ipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 408 (1108)
T 3l9o_A 331 IPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDS 408 (1108)
T ss_dssp CSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-------------
T ss_pred CCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccc
Confidence 8764 4455555555554443332211 11122111110 0
Q ss_pred -----------------CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCc---------------------
Q 015759 202 -----------------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQR--------------------- 243 (401)
Q Consensus 202 -----------------~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~--------------------- 243 (401)
......+...+......++||||+++..|+.++..|...++.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 488 (1108)
T 3l9o_A 409 RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPE 488 (1108)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHH
T ss_pred ccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcch
Confidence 001112223334456779999999999999999988653322
Q ss_pred ------------------eEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCC--------CC
Q 015759 244 ------------------AIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIP--------TN 297 (401)
Q Consensus 244 ------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p--------~s 297 (401)
+..+||+|++.+|..+++.|.+|.++|||||+++++|+|+|++++||+++.| .|
T Consensus 489 ~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS 568 (1108)
T 3l9o_A 489 TDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVS 568 (1108)
T ss_dssp HTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECC
T ss_pred hhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCC
Confidence 7899999999999999999999999999999999999999999999977654 46
Q ss_pred hhHHHHHhhhcccCC--CCceEEEEeccc-cHHHHHHH
Q 015759 298 SKDYIHRVGRTARAG--RTGVAISLVNQY-ELEWYLQI 332 (401)
Q Consensus 298 ~~~~~Q~~GR~~R~g--~~g~~i~~~~~~-~~~~~~~~ 332 (401)
+.+|+||+||+||.| ..|.+++++++. +...+..+
T Consensus 569 ~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 569 GGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp HHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred HHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 778999999999999 568888888765 33333333
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.4e-44 Score=360.47 Aligned_cols=319 Identities=20% Similarity=0.192 Sum_probs=196.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++++|||+|||++|++|++..+..... ..+.++||++|+++|+.|+.+.+++++...++++..++|
T Consensus 257 i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~----~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g 332 (797)
T 4a2q_A 257 AQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA----GRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG 332 (797)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS----SCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECC
T ss_pred HHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc----cCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeC
Confidence 5667889999999999999999999999888765321 126789999999999999999999998767899999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH-HHHHHHHHh----CCCCceEEE
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE-KSLDEILNV----IPRMRQTYL 157 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~-~~~~~i~~~----~~~~~~~i~ 157 (401)
+.........+..+++|+|+||++|.+.+.......+.++++||+||||++...... ..+..+... ..+..++++
T Consensus 333 ~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 412 (797)
T 4a2q_A 333 ENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILG 412 (797)
T ss_dssp C-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEE
T ss_pred CcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEE
Confidence 987665555555579999999999999888654336788999999999998875432 333333332 145578999
Q ss_pred EeecCch-----------HHHHHHHHh------------------cCCCeEEEeccccccccc---------------ce
Q 015759 158 FSATMTK-----------KVKKLQRAC------------------LKNPVKIEAASKYSTVDT---------------LK 193 (401)
Q Consensus 158 ~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~---------------~~ 193 (401)
+|||+.. .+..+.... ...+.............. ..
T Consensus 413 lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 492 (797)
T 4a2q_A 413 LTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMR 492 (797)
T ss_dssp EESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred EcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999952 222222111 111111100000000000 00
Q ss_pred EEE-----EEc---------------------------------------------------------------------
Q 015759 194 QQY-----RFV--------------------------------------------------------------------- 199 (401)
Q Consensus 194 ~~~-----~~~--------------------------------------------------------------------- 199 (401)
..+ ...
T Consensus 493 ~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 572 (797)
T 4a2q_A 493 TIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLT 572 (797)
T ss_dssp HC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHH
Confidence 000 000
Q ss_pred -------------------------------------CCCChhHHHHHHHHh----cCCCCEEEEecchHHHHHHHHHHH
Q 015759 200 -------------------------------------PAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 200 -------------------------------------~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
....|...+..++.. ..+.++||||+++..++.+++.|+
T Consensus 573 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~ 652 (797)
T 4a2q_A 573 EFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCME 652 (797)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHH
Confidence 012233334444433 467899999999999999999998
Q ss_pred hc------------CCceEeecCCCCHHHHHHHHhhccC-CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHh
Q 015759 239 NL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRV 305 (401)
Q Consensus 239 ~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~ 305 (401)
+. |..+..+||+|+..+|..++++|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+||+
T Consensus 653 ~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~ 732 (797)
T 4a2q_A 653 ENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732 (797)
T ss_dssp TCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-
T ss_pred hCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhc
Confidence 74 5566777899999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhcccCCCCceEEEEeccccHH
Q 015759 306 GRTARAGRTGVAISLVNQYELE 327 (401)
Q Consensus 306 GR~~R~g~~g~~i~~~~~~~~~ 327 (401)
|| ||. +.|.+++++...+..
T Consensus 733 GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 733 GR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp --------CCCEEEEECCHHHH
T ss_pred CC-CCC-CCceEEEEEeCCcHH
Confidence 99 998 789999999887654
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-42 Score=354.32 Aligned_cols=307 Identities=19% Similarity=0.197 Sum_probs=240.5
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++++.+|+++++++|||+|||++|.++++..+. .+.++||++|+++|+.|+++.+.++.. .+..++|
T Consensus 95 i~~l~~g~~vLV~apTGSGKTlva~lai~~~l~---------~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltG 161 (1010)
T 2xgj_A 95 ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK---------NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTG 161 (1010)
T ss_dssp HHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECS
T ss_pred HHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc---------cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeC
Confidence 456788999999999999999999988887663 567899999999999999999998764 5667788
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.+.. ..++|+|+||++|.+.+.... ..+.++++|||||+|++.+.+++..+..++..++...|++++|||+
T Consensus 162 d~~~~-------~~~~IvV~Tpe~L~~~L~~~~-~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi 233 (1010)
T 2xgj_A 162 DITIN-------PDAGCLVMTTEILRSMLYRGS-EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI 233 (1010)
T ss_dssp SCEEC-------TTCSEEEEEHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred CCccC-------CCCCEEEEcHHHHHHHHHcCc-chhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCC
Confidence 76542 258899999999998877654 4678999999999999999989999999999999999999999999
Q ss_pred chHHH--HHHHHhcCCCeEEEecccccccccceEEEEEcC---------C------------------------------
Q 015759 163 TKKVK--KLQRACLKNPVKIEAASKYSTVDTLKQQYRFVP---------A------------------------------ 201 (401)
Q Consensus 163 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------------------------ 201 (401)
++... .........+..+...... ...+.+++.... .
T Consensus 234 ~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 311 (1010)
T 2xgj_A 234 PNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSR 311 (1010)
T ss_dssp TTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------
T ss_pred CCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccc
Confidence 76432 3333333444433322211 111222222111 0
Q ss_pred ----------------CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCC-----------------------
Q 015759 202 ----------------KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQ----------------------- 242 (401)
Q Consensus 202 ----------------~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~----------------------- 242 (401)
......+...+......++||||+++..|+.++..|...++
T Consensus 312 g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 391 (1010)
T 2xgj_A 312 GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPET 391 (1010)
T ss_dssp -----------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGG
T ss_pred cccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchh
Confidence 01112233334445667999999999999999999877543
Q ss_pred ----------------ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEE----ecC----CCCh
Q 015759 243 ----------------RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN----YDI----PTNS 298 (401)
Q Consensus 243 ----------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~----~~~----p~s~ 298 (401)
.+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||. |.++
T Consensus 392 d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~ 471 (1010)
T 2xgj_A 392 DRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSG 471 (1010)
T ss_dssp GTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCH
T ss_pred hhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCH
Confidence 2788999999999999999999999999999999999999999999999 998 8999
Q ss_pred hHHHHHhhhcccCCC--CceEEEEeccc-cHHHHHHH
Q 015759 299 KDYIHRVGRTARAGR--TGVAISLVNQY-ELEWYLQI 332 (401)
Q Consensus 299 ~~~~Q~~GR~~R~g~--~g~~i~~~~~~-~~~~~~~~ 332 (401)
.+|.||+||+||.|. .|.+++++++. +...+..+
T Consensus 472 ~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 472 GEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp HHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred HHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999999999999996 49999999865 44444443
No 27
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.1e-44 Score=372.32 Aligned_cols=309 Identities=22% Similarity=0.275 Sum_probs=243.9
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCc----eE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISL----RC 77 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i----~~ 77 (401)
.++.+++|+|++++||||||||+ |++|++..+.. .+.++||++||++|+.|+++.+++++...++ .+
T Consensus 64 ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v 134 (1054)
T 1gku_B 64 WAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLI 134 (1054)
T ss_dssp HHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSE
T ss_pred HHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceE
Confidence 36778899999999999999998 88888887764 5678999999999999999999999887788 89
Q ss_pred EEEEcCCChHHH---HHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC----
Q 015759 78 AVLVGGVDMMQQ---TLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP---- 150 (401)
Q Consensus 78 ~~~~~~~~~~~~---~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~---- 150 (401)
..++|+.+...+ ...+.. ++|+|+||++|.+++.. +.++++||+||+|++++ ++..+..++..++
T Consensus 135 ~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~ 206 (1054)
T 1gku_B 135 GYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYD 206 (1054)
T ss_dssp EECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEE
T ss_pred EEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchh
Confidence 999999877653 333444 99999999999886554 56899999999999988 5677888877763
Q ss_pred -------CCceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEE
Q 015759 151 -------RMRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVF 223 (401)
Q Consensus 151 -------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf 223 (401)
...|++++|||++.. ..+...++..+..+...........+.+.+. ...+...+..++... +.++|||
T Consensus 207 ~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF 281 (1054)
T 1gku_B 207 LKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSSILEKL-GTGGIIY 281 (1054)
T ss_dssp TTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEE
T ss_pred hhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHHHHhhc-CCCEEEE
Confidence 456899999999876 4333333222222333333333344555444 344555566666654 5789999
Q ss_pred ecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEE----cCCCCCCCCCCCC-CEEEEecCC---
Q 015759 224 TRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILIC----TDVASRGLDIPSV-DMVINYDIP--- 295 (401)
Q Consensus 224 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~----T~~~~~Gid~~~~-~~vi~~~~p--- 295 (401)
|++++.++.+++.|++. +.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||++|.|
T Consensus 282 ~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~ 355 (1054)
T 1gku_B 282 ARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFR 355 (1054)
T ss_dssp ESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEE
T ss_pred EcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccc
Confidence 99999999999999988 9999999998 37889999999999999 8999999999995 999999999
Q ss_pred --------------------------------------------------------------------CChhHHHHHhhh
Q 015759 296 --------------------------------------------------------------------TNSKDYIHRVGR 307 (401)
Q Consensus 296 --------------------------------------------------------------------~s~~~~~Q~~GR 307 (401)
.+..+|+||+||
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GR 435 (1054)
T 1gku_B 356 VTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGR 435 (1054)
T ss_dssp EECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHT
T ss_pred ccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhch
Confidence 789999999999
Q ss_pred cccCCCCc--eEEEEeccccHHHHHHHHHHhCC
Q 015759 308 TARAGRTG--VAISLVNQYELEWYLQIEKLIGK 338 (401)
Q Consensus 308 ~~R~g~~g--~~i~~~~~~~~~~~~~~~~~~~~ 338 (401)
+||.|..| .+++++...+...+..+++.++.
T Consensus 436 agR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 436 TSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred hhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 99987765 48888888888888888888764
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-42 Score=334.42 Aligned_cols=308 Identities=17% Similarity=0.202 Sum_probs=236.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.++.|+ |..++||+|||++|.+|++...+ .++.++|++||++||.|.++++..+...+++++..+.|
T Consensus 92 ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL---------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~g 160 (844)
T 1tf5_A 92 GVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL---------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLN 160 (844)
T ss_dssp HHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred hHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH---------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 56788898 99999999999999999985544 45679999999999999999999998888999999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHH-HHHHhcCC-----CCCCCCccEEEEcchhhcc-ccc---------------cHH
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLL-NDD---------------FEK 140 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~h~~~-~~~---------------~~~ 140 (401)
+.+...+... .+++|+|+||++| .+++..+- .+.+..+.++|+||||+++ +.. |..
T Consensus 161 g~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~ 238 (844)
T 1tf5_A 161 SMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYV 238 (844)
T ss_dssp TSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHH
T ss_pred CCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHHH
Confidence 9876544433 3589999999999 66665431 2456889999999999987 542 678
Q ss_pred HHHHHHHhCC---------CCceEE-----------------EEeecCchHHHHHH-----HHhcC-CCeEE-------E
Q 015759 141 SLDEILNVIP---------RMRQTY-----------------LFSATMTKKVKKLQ-----RACLK-NPVKI-------E 181 (401)
Q Consensus 141 ~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~~-----~~~~~-~~~~~-------~ 181 (401)
.+..++..++ +.+|+. ++|||.+.....+. ..++. +...+ .
T Consensus 239 ~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~i 318 (844)
T 1tf5_A 239 QANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVI 318 (844)
T ss_dssp HHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEE
T ss_pred HHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEE
Confidence 8889999887 356777 88999764332221 11111 11000 0
Q ss_pred e-----------------------------cccccccc------------------------------------------
Q 015759 182 A-----------------------------ASKYSTVD------------------------------------------ 190 (401)
Q Consensus 182 ~-----------------------------~~~~~~~~------------------------------------------ 190 (401)
+ ........
T Consensus 319 vDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn 398 (844)
T 1tf5_A 319 VDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN 398 (844)
T ss_dssp BCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS
T ss_pred eecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecCC
Confidence 0 00000000
Q ss_pred --cce---EEEEEcCCCChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhc
Q 015759 191 --TLK---QQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 263 (401)
Q Consensus 191 --~~~---~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 263 (401)
..+ ..+.......|...+...+.. ..+.++||||+|++.++.+++.|...|+.+..+|+++...+|..+.+.|
T Consensus 399 ~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag 478 (844)
T 1tf5_A 399 RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAG 478 (844)
T ss_dssp SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcC
Confidence 000 012233334456666666653 3577899999999999999999999999999999999888887777777
Q ss_pred cCCCceEEEEcCCCCCCCCCC--------CCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEecccc
Q 015759 264 KAGECNILICTDVASRGLDIP--------SVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYE 325 (401)
Q Consensus 264 ~~~~~~vLv~T~~~~~Gid~~--------~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~ 325 (401)
+.| .|+|||+++++|+|++ ++.+||+|+.|.|...|.||+||+||.|.+|.+++|++.+|
T Consensus 479 ~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 479 QKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp STT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 666 6999999999999999 78899999999999999999999999999999999998765
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.3e-42 Score=347.73 Aligned_cols=319 Identities=19% Similarity=0.204 Sum_probs=242.9
Q ss_pred ccc-ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 3 LWF-CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 3 l~~-~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
++. +.+|+++++++|||||||+++.++++..+.. .+.+++|++|+++|+.|++++++.+.. .++++..++
T Consensus 32 i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~~l~i~P~raLa~q~~~~~~~l~~-~g~~v~~~~ 102 (720)
T 2zj8_A 32 LKSGILEGKNALISIPTASGKTLIAEIAMVHRILT--------QGGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMAT 102 (720)
T ss_dssp HTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH--------HCSEEEEECSSGGGHHHHHHHTGGGGG-GTCCEEEEC
T ss_pred HHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCCEEEEEcCcHHHHHHHHHHHHHHHh-cCCEEEEec
Confidence 455 7889999999999999999999999988764 356899999999999999999976543 478999999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+....... ...++|+|+||+++...+.... ..+.++++||+||+|.+.+..++..+..++..++...|++++|||
T Consensus 103 G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSAT 178 (720)
T 2zj8_A 103 GDYDSKDEW---LGKYDIIIATAEKFDSLLRHGS-SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSAT 178 (720)
T ss_dssp SCSSCCCGG---GGGCSEEEECHHHHHHHHHHTC-TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECC
T ss_pred CCCCccccc---cCCCCEEEECHHHHHHHHHcCh-hhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCC
Confidence 976543321 2358999999999988887754 347889999999999998888999999998888767899999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEE------EEEcC-----CCChhHHHHHHHHhcCCCCEEEEecchHHH
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQ------YRFVP-----AKYKDCYLVYILTEVSASSTMVFTRTCDAT 230 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~ 230 (401)
+++. ..+.. ++..+. +..... + ..+... ..... .......+...+. .++++||||++++.+
T Consensus 179 l~n~-~~~~~-~l~~~~-~~~~~r--p-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~ 250 (720)
T 2zj8_A 179 IGNP-EELAE-WLNAEL-IVSDWR--P-VKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKA 250 (720)
T ss_dssp CSCH-HHHHH-HTTEEE-EECCCC--S-SEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHH
T ss_pred cCCH-HHHHH-HhCCcc-cCCCCC--C-CcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHH
Confidence 9752 33333 332211 111100 0 011111 11111 1223334444333 568999999999999
Q ss_pred HHHHHHHHhcC---------------------------------CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCC
Q 015759 231 RLLALMLRNLG---------------------------------QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA 277 (401)
Q Consensus 231 ~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~ 277 (401)
+.++..|.+.. ..+..+|++++.++|..+++.|++|..+|||||+++
T Consensus 251 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l 330 (720)
T 2zj8_A 251 ERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTL 330 (720)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTT
T ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHh
Confidence 99999987531 248999999999999999999999999999999999
Q ss_pred CCCCCCCCCCEEEE----ec----CCCChhHHHHHhhhcccCC--CCceEEEEeccccHHHHHHHHHHhCCCCCCCC
Q 015759 278 SRGLDIPSVDMVIN----YD----IPTNSKDYIHRVGRTARAG--RTGVAISLVNQYELEWYLQIEKLIGKKLPEFP 344 (401)
Q Consensus 278 ~~Gid~~~~~~vi~----~~----~p~s~~~~~Q~~GR~~R~g--~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (401)
++|+|+|++++||+ || .|.|..+|.||+||+||.| ..|.|++++.+.+.. ..+++++....+++.
T Consensus 331 ~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 331 SAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp GGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH--HHHHHHTTSCCCCCC
T ss_pred hccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCCCCCcE
Confidence 99999999999998 76 6899999999999999998 468899999887732 234455554444443
No 30
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=6.1e-42 Score=341.91 Aligned_cols=301 Identities=18% Similarity=0.245 Sum_probs=232.9
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.+|++++++||||||||+++.++++..+. .+.+++|++|+++|+.|+++.++.+. ..++++..++|
T Consensus 34 i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~---------~~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G 103 (702)
T 2p6r_A 34 VEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAI---------KGGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTG 103 (702)
T ss_dssp HHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECS
T ss_pred HHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHH---------hCCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeC
Confidence 456788999999999999999999999998765 35679999999999999999996553 35789999998
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC---CCCceEEEEe
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI---PRMRQTYLFS 159 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~S 159 (401)
+...... ....++|+|+||+++...+.... ..+.++++||+||+|.+.+.+++..+..++..+ .+..|++++|
T Consensus 104 ~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~-~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lS 179 (702)
T 2p6r_A 104 DYESRDE---HLGDCDIIVTTSEKADSLIRNRA-SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLS 179 (702)
T ss_dssp SCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC-SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCcchh---hccCCCEEEECHHHHHHHHHcCh-hHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEEC
Confidence 7654332 12368999999999999887754 347889999999999998878888877776655 4678999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEE------EEcCCCC-------hhHHHHHHHHhcCCCCEEEEecc
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQY------RFVPAKY-------KDCYLVYILTEVSASSTMVFTRT 226 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~~~~l~~~l~~~~~~~~ivf~~~ 226 (401)
||+++ ...+.. ++..+ .+....... .+...+ ....... ....+...+ ..++++||||++
T Consensus 180 ATl~n-~~~~~~-~l~~~-~~~~~~r~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s 251 (702)
T 2p6r_A 180 ATAPN-VTEIAE-WLDAD-YYVSDWRPV---PLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFEST 251 (702)
T ss_dssp CCCTT-HHHHHH-HTTCE-EEECCCCSS---CEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSS
T ss_pred CCcCC-HHHHHH-HhCCC-cccCCCCCc---cceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCC
Confidence 99985 334433 33322 121111110 111111 1111111 233333333 267899999999
Q ss_pred hHHHHHHHHHHHhc------------------------------CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC
Q 015759 227 CDATRLLALMLRNL------------------------------GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 276 (401)
Q Consensus 227 ~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~ 276 (401)
++.++.+++.|.+. +..+..+||+++.++|..+++.|.+|..+|||||++
T Consensus 252 ~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~ 331 (702)
T 2p6r_A 252 RRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPT 331 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECST
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcH
Confidence 99999999988753 235888999999999999999999999999999999
Q ss_pred CCCCCCCCCCCEEEE----ec---CCCChhHHHHHhhhcccCC--CCceEEEEecccc
Q 015759 277 ASRGLDIPSVDMVIN----YD---IPTNSKDYIHRVGRTARAG--RTGVAISLVNQYE 325 (401)
Q Consensus 277 ~~~Gid~~~~~~vi~----~~---~p~s~~~~~Q~~GR~~R~g--~~g~~i~~~~~~~ 325 (401)
+++|+|+|++++||+ || .|.|..+|.||+||+||.| ..|.|+.++.+.+
T Consensus 332 l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 332 LAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp TTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 999999999999998 66 7899999999999999998 4689999998877
No 31
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.6e-42 Score=341.90 Aligned_cols=301 Identities=21% Similarity=0.235 Sum_probs=227.3
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+.+|++++++||||||||+++.++++..+.. .+.+++|++|+++|+.|+++.++.+. ..++++..++|+..
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~ 113 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--------NGGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYD 113 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--------SCSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSS
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--------CCCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCC
Confidence 6789999999999999999999999988764 45689999999999999999996554 34788888888765
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
..... . ..++|+|+||+++...+.... ..+.++++||+||+|.+.+..++..+..++..++ ..|++++|||+++.
T Consensus 114 ~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~-~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~ 188 (715)
T 2va8_A 114 TDDAW--L-KNYDIIITTYEKLDSLWRHRP-EWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY 188 (715)
T ss_dssp SCCGG--G-GGCSEEEECHHHHHHHHHHCC-GGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH
T ss_pred Cchhh--c-CCCCEEEEcHHHHHHHHhCCh-hHhhccCEEEEechhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH
Confidence 54322 1 268999999999999887754 3478999999999999888788888888887776 67899999999752
Q ss_pred HHHHHHHhcCCCeEEEecccccccc---------cceEEEEEcC--------CCChhHHHHHHHHhcCCCCEEEEecchH
Q 015759 166 VKKLQRACLKNPVKIEAASKYSTVD---------TLKQQYRFVP--------AKYKDCYLVYILTEVSASSTMVFTRTCD 228 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~ivf~~~~~ 228 (401)
..+.. ++..+. +.......+.. .........+ .......+...+ ..++++||||++++
T Consensus 189 -~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~ 263 (715)
T 2va8_A 189 -KQIAK-WLGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSRK 263 (715)
T ss_dssp -HHHHH-HHTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSHH
T ss_pred -HHHHH-HhCCCc-cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCHH
Confidence 33333 333211 11111100000 0000111111 111222222222 25789999999999
Q ss_pred HHHHHHHHHHhcC------------------------------------CceEeecCCCCHHHHHHHHhhccCCCceEEE
Q 015759 229 ATRLLALMLRNLG------------------------------------QRAIPISGHMSQSKRLGALNKFKAGECNILI 272 (401)
Q Consensus 229 ~~~~l~~~l~~~~------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv 272 (401)
.++.+++.|.+.. ..+..+||+++..+|..+++.|.+|..+|||
T Consensus 264 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlv 343 (715)
T 2va8_A 264 MAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIV 343 (715)
T ss_dssp HHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 9999999998642 2489999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCCCEEEE----ec-------CCCChhHHHHHhhhcccCCC--CceEEEEecccc
Q 015759 273 CTDVASRGLDIPSVDMVIN----YD-------IPTNSKDYIHRVGRTARAGR--TGVAISLVNQYE 325 (401)
Q Consensus 273 ~T~~~~~Gid~~~~~~vi~----~~-------~p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~~ 325 (401)
||+++++|+|+|++++||+ || .|.|..+|.||+||+||.|. .|.|+.++.+.+
T Consensus 344 aT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 344 ATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred EChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999999999999999998 88 89999999999999999884 689999987765
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.3e-43 Score=355.79 Aligned_cols=319 Identities=20% Similarity=0.207 Sum_probs=195.4
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+++++++|||+|||++|++|++..+.... ...+.++||++|+++|+.||.+.++++....++++..++|
T Consensus 257 i~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~----~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G 332 (936)
T 4a2w_A 257 AQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP----AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG 332 (936)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC----SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc----ccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEEC
Confidence 566788999999999999999999999887765421 1126789999999999999999999998777899999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHh----CCCCceEEE
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNV----IPRMRQTYL 157 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~----~~~~~~~i~ 157 (401)
+.........+..+++|+|+||++|.+.+.......+.++++||+||||++.... +...+..+... ..+..++++
T Consensus 333 ~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~ 412 (936)
T 4a2w_A 333 ENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILG 412 (936)
T ss_dssp C-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEE
T ss_pred CcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEE
Confidence 9866554444444689999999999998887553367889999999999988754 33333333332 144578999
Q ss_pred EeecCch-----------HHHHHHHHh------------------cCCCeEEEeccccccccc-----------------
Q 015759 158 FSATMTK-----------KVKKLQRAC------------------LKNPVKIEAASKYSTVDT----------------- 191 (401)
Q Consensus 158 ~SAT~~~-----------~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~----------------- 191 (401)
+|||+.. .+..+.... ...+..............
T Consensus 413 LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~ 492 (936)
T 4a2w_A 413 LTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMR 492 (936)
T ss_dssp EESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHH
Confidence 9999942 222221111 111111111000000000
Q ss_pred -------c--eEEEEEc---------------------------------------------------------------
Q 015759 192 -------L--KQQYRFV--------------------------------------------------------------- 199 (401)
Q Consensus 192 -------~--~~~~~~~--------------------------------------------------------------- 199 (401)
+ .......
T Consensus 493 ~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~ 572 (936)
T 4a2w_A 493 TIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLT 572 (936)
T ss_dssp HC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 0 0000000
Q ss_pred -------------------------------------CCCChhHHHHHHHHh----cCCCCEEEEecchHHHHHHHHHHH
Q 015759 200 -------------------------------------PAKYKDCYLVYILTE----VSASSTMVFTRTCDATRLLALMLR 238 (401)
Q Consensus 200 -------------------------------------~~~~~~~~l~~~l~~----~~~~~~ivf~~~~~~~~~l~~~l~ 238 (401)
....|...+..++.. ..+.++||||+++..++.+++.|.
T Consensus 573 ~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~ 652 (936)
T 4a2w_A 573 EFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCME 652 (936)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 011233333444443 356899999999999999999999
Q ss_pred hc------------CCceEeecCCCCHHHHHHHHhhccC-CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHh
Q 015759 239 NL------------GQRAIPISGHMSQSKRLGALNKFKA-GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRV 305 (401)
Q Consensus 239 ~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~ 305 (401)
+. |.....+||+|+..+|.+++++|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+||+
T Consensus 653 ~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~ 732 (936)
T 4a2w_A 653 ENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVR 732 (936)
T ss_dssp HCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-
T ss_pred hCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhc
Confidence 87 5566677899999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhcccCCCCceEEEEeccccHH
Q 015759 306 GRTARAGRTGVAISLVNQYELE 327 (401)
Q Consensus 306 GR~~R~g~~g~~i~~~~~~~~~ 327 (401)
|| ||. +.|.++.++...+.+
T Consensus 733 GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 733 GR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --------CCCEEEEESCHHHH
T ss_pred CC-CCC-CCCEEEEEEeCCCHH
Confidence 99 998 689999999876543
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.2e-43 Score=353.56 Aligned_cols=306 Identities=21% Similarity=0.246 Sum_probs=209.5
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHH-HHHHHHhccCCCceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQI-SEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-~~~l~~~~~~~~i~~~~~~ 81 (401)
++.+++|+++++.+|||+|||++|++|++..+....... .+.++||++|+++|+.|| .+++++++.. ++.+..++
T Consensus 16 i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~---~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~ 91 (699)
T 4gl2_A 16 AQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKAS---EPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLS 91 (699)
T ss_dssp HHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHT---CCCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC
T ss_pred HHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccC---CCCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEe
Confidence 567788999999999999999999999998887653211 336799999999999999 9999998764 48889999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhc-----CCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhC------
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTN-----TKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVI------ 149 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~-----~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~------ 149 (401)
|+.........+...++|+|+||++|.+.+.. ...+.+..+++|||||||++.... +...+..++...
T Consensus 92 g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~ 171 (699)
T 4gl2_A 92 GDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRL 171 (699)
T ss_dssp ----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhccccc
Confidence 98765544444445799999999999987742 223467889999999999876532 333333332221
Q ss_pred -------CCCceEEEEeecCchH-----------HHHHHHHhcCCCeEEEeccc---ccccccceEEEEEcC--------
Q 015759 150 -------PRMRQTYLFSATMTKK-----------VKKLQRACLKNPVKIEAASK---YSTVDTLKQQYRFVP-------- 200 (401)
Q Consensus 150 -------~~~~~~i~~SAT~~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------- 200 (401)
.+.++++++|||+... +..+................ ..........+..+.
T Consensus 172 ~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 251 (699)
T 4gl2_A 172 KKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFK 251 (699)
T ss_dssp HC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHH
T ss_pred ccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHH
Confidence 1456899999999852 22222221110000000000 000000000010000
Q ss_pred --------------------------------------------------------------------------------
Q 015759 201 -------------------------------------------------------------------------------- 200 (401)
Q Consensus 201 -------------------------------------------------------------------------------- 200 (401)
T Consensus 252 ~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 331 (699)
T 4gl2_A 252 EKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYN 331 (699)
T ss_dssp HHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------CCChhHHHHHHHH----hcC-CCCEEEEecchH
Q 015759 201 -----------------------------------------------AKYKDCYLVYILT----EVS-ASSTMVFTRTCD 228 (401)
Q Consensus 201 -----------------------------------------------~~~~~~~l~~~l~----~~~-~~~~ivf~~~~~ 228 (401)
...+...+..++. ..+ ++++||||+++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~ 411 (699)
T 4gl2_A 332 EEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQ 411 (699)
T ss_dssp HHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHH
T ss_pred HHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHH
Confidence 0011111112222 223 789999999999
Q ss_pred HHHHHHHHHHhc------CCceEeecCC--------CCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecC
Q 015759 229 ATRLLALMLRNL------GQRAIPISGH--------MSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI 294 (401)
Q Consensus 229 ~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~ 294 (401)
.++.+++.|++. |+.+..+||+ |+..+|.+++++|++|+.+|||||+++++|+|+|++++||+||+
T Consensus 412 ~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~ 491 (699)
T 4gl2_A 412 SAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGL 491 (699)
T ss_dssp HHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESC
T ss_pred HHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCC
Confidence 999999999987 8999999999 99999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHhhhcccCC
Q 015759 295 PTNSKDYIHRVGRTARAG 312 (401)
Q Consensus 295 p~s~~~~~Q~~GR~~R~g 312 (401)
|+|+..|+||+||+||.|
T Consensus 492 p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 492 VTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCHHHHHHHHTTSCSSS
T ss_pred CCCHHHHHHHcCCCCCCC
Confidence 999999999999976644
No 34
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.1e-41 Score=345.13 Aligned_cols=309 Identities=18% Similarity=0.206 Sum_probs=233.8
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++++++|+++++.+|||+|||++|++++...+. .+.+++|++|+++|+.|+++.+.++.. ++.+..++
T Consensus 47 aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~ 115 (997)
T 4a4z_A 47 AVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---------NMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLIT 115 (997)
T ss_dssp HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---------TTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEEC
T ss_pred HHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---------cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEe
Confidence 3567889999999999999999999888776543 567899999999999999999998754 57888888
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.... ..++|+|+||++|.+.+.... ..+.++++|||||+|++.+.+++..+..++..+++..|++++|||
T Consensus 116 G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 116 GDVQIN-------PDANCLIMTTEILRSMLYRGA-DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp SSCEEC-------TTSSEEEEEHHHHHHHHHHTC-SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred CCCccC-------CCCCEEEECHHHHHHHHHhCc-hhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 876532 358999999999999887654 357889999999999999998999999999999999999999999
Q ss_pred CchHHH--HHHHHhcCCCeEEEecccccccccceEE--------------------------------------------
Q 015759 162 MTKKVK--KLQRACLKNPVKIEAASKYSTVDTLKQQ-------------------------------------------- 195 (401)
Q Consensus 162 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 195 (401)
+++... .........+..+...... ...+.+.
T Consensus 188 ~~n~~ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (997)
T 4a4z_A 188 VPNTYEFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNG 265 (997)
T ss_dssp CTTHHHHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--------------
T ss_pred CCChHHHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccc
Confidence 875432 2222111122111111000 0000000
Q ss_pred -------------------------------------------------EEEcCCCChhHHHHHHHHhcCCCCEEEEecc
Q 015759 196 -------------------------------------------------YRFVPAKYKDCYLVYILTEVSASSTMVFTRT 226 (401)
Q Consensus 196 -------------------------------------------------~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~ 226 (401)
+...+.......+...+......++||||++
T Consensus 266 ~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~s 345 (997)
T 4a4z_A 266 RGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFS 345 (997)
T ss_dssp ---------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECC
Confidence 0001122234455566666677899999999
Q ss_pred hHHHHHHHHHHHhcCC---------------------------------------ceEeecCCCCHHHHHHHHhhccCCC
Q 015759 227 CDATRLLALMLRNLGQ---------------------------------------RAIPISGHMSQSKRLGALNKFKAGE 267 (401)
Q Consensus 227 ~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~~~f~~~~ 267 (401)
++.|+.++..|...++ .+..+|++|++.+|..+++.|.+|.
T Consensus 346 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~ 425 (997)
T 4a4z_A 346 KKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF 425 (997)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 9999999999977655 5789999999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCEEEEecCCC---------ChhHHHHHhhhcccCC--CCceEEEEec--cccHHHHHHH
Q 015759 268 CNILICTDVASRGLDIPSVDMVINYDIPT---------NSKDYIHRVGRTARAG--RTGVAISLVN--QYELEWYLQI 332 (401)
Q Consensus 268 ~~vLv~T~~~~~Gid~~~~~~vi~~~~p~---------s~~~~~Q~~GR~~R~g--~~g~~i~~~~--~~~~~~~~~~ 332 (401)
++|||||+++++|+|+|+ ..||+++.|. |+.+|.|++||+||.| ..|.+++++. ..+...+..+
T Consensus 426 ~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred CcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 999999999999999999 5555544444 9999999999999998 4577777773 3344444444
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.1e-41 Score=327.74 Aligned_cols=309 Identities=18% Similarity=0.190 Sum_probs=215.0
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.++.|+ |..++||+|||++|++|++...+ .+.+++|++||++||.|.++++..+...+++++..+.|
T Consensus 83 i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l---------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~G 151 (853)
T 2fsf_A 83 GMVLNERC--IAEMRTGEGKTLTATLPAYLNAL---------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLP 151 (853)
T ss_dssp HHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT---------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred cccccCCe--eeeecCCchHHHHHHHHHHHHHH---------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 46678888 99999999999999999986554 45679999999999999999999998888999999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHH-HHHHhcCC-----CCCCCCccEEEEcchhhcc-cc---------------ccHH
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLL-ND---------------DFEK 140 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~h~~~-~~---------------~~~~ 140 (401)
|.+...+... .+++|+|+||++| .+++..+- .+.+..+.++|+||+|+++ +. ++..
T Consensus 152 G~~~~~r~~~--~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~ 229 (853)
T 2fsf_A 152 GMPAPAKREA--YAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYK 229 (853)
T ss_dssp TCCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC---------
T ss_pred CCCHHHHHHh--cCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHH
Confidence 9876543333 3589999999999 78776542 1456889999999999988 43 2556
Q ss_pred HHHHHHHhCCC--------------------CceEE------------------------EEeecCchHHHHHH-----H
Q 015759 141 SLDEILNVIPR--------------------MRQTY------------------------LFSATMTKKVKKLQ-----R 171 (401)
Q Consensus 141 ~~~~i~~~~~~--------------------~~~~i------------------------~~SAT~~~~~~~~~-----~ 171 (401)
.+..++..+++ .+|+. ++|||.+.....+. .
T Consensus 230 ~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~ 309 (853)
T 2fsf_A 230 RVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAH 309 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHH
Confidence 67777777764 34543 78998754211110 0
Q ss_pred HhcC-------------------------------------CCeEEEecccccccccce---------------------
Q 015759 172 ACLK-------------------------------------NPVKIEAASKYSTVDTLK--------------------- 193 (401)
Q Consensus 172 ~~~~-------------------------------------~~~~~~~~~~~~~~~~~~--------------------- 193 (401)
.++. .+..+.+.........+.
T Consensus 310 ~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te 389 (853)
T 2fsf_A 310 ALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTE 389 (853)
T ss_dssp -----------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCC
T ss_pred HHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhH
Confidence 0000 001111111111111111
Q ss_pred --------------------------EEEEEcCCCChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceE
Q 015759 194 --------------------------QQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAI 245 (401)
Q Consensus 194 --------------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~ 245 (401)
..+..+....|...+...+.. ..+.++||||+|++.++.+++.|++.|+.+.
T Consensus 390 ~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~ 469 (853)
T 2fsf_A 390 AFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHN 469 (853)
T ss_dssp HHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEE
Confidence 112333444566666666644 3578999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCC-------------------------------------CE
Q 015759 246 PISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSV-------------------------------------DM 288 (401)
Q Consensus 246 ~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~-------------------------------------~~ 288 (401)
.+|+++...++..+.+.|+.| .|+|||+++++|+|++.. .+
T Consensus 470 vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~ 547 (853)
T 2fsf_A 470 VLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLH 547 (853)
T ss_dssp ECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcE
Confidence 999999888888888999988 699999999999999863 59
Q ss_pred EEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 289 VINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 289 vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
||+++.|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 548 VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 548 IIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred EEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 99999999999999999999999999999999987763
No 36
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6e-42 Score=329.90 Aligned_cols=294 Identities=18% Similarity=0.195 Sum_probs=217.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+++++.++++++++||||||||++|.+++++ .+.++||++||++|+.|+++.+.+.. +..+....
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------------~g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~v 289 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------------QGYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRT 289 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------------TTCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEEC
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------------CCCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEE
Confidence 4567789999999999999999999888775 45579999999999999999887654 23455556
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCce--EEEEe
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQ--TYLFS 159 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~--~i~~S 159 (401)
|+.. ...+++|+|+||++|+ . ...+.+.++++||+||+| +.+.++...+..++..++..++ ++++|
T Consensus 290 G~~~-------~~~~~~IlV~TPGrLl---~-~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~S 357 (666)
T 3o8b_A 290 GVRT-------ITTGAPVTYSTYGKFL---A-DGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLVVLAT 357 (666)
T ss_dssp SSCE-------ECCCCSEEEEEHHHHH---H-TTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred CcEe-------ccCCCCEEEECcHHHH---h-CCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceEEEEC
Confidence 6543 3456899999999983 2 234567889999999997 6677888889999999887766 77889
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHh
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN 239 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~ 239 (401)
||++..+. ...+.......... .. ......... +....++++||||++++.++.+++.|++
T Consensus 358 AT~~~~i~------~~~p~i~~v~~~~~---~~---i~~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~ 418 (666)
T 3o8b_A 358 ATPPGSVT------VPHPNIEEVALSNT---GE---IPFYGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSG 418 (666)
T ss_dssp SSCTTCCC------CCCTTEEEEECBSC---SS---EEETTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCcccc------cCCcceEEEeeccc---ch---hHHHHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHh
Confidence 99987321 11111111111100 00 011100000 1233678999999999999999999999
Q ss_pred cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEE----------Eec-----------CCCCh
Q 015759 240 LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVI----------NYD-----------IPTNS 298 (401)
Q Consensus 240 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi----------~~~-----------~p~s~ 298 (401)
.++.+..+||++++.+ |.++..+|||||+++++|||+| +++|| ||| .|.+.
T Consensus 419 ~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~ 490 (666)
T 3o8b_A 419 LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490 (666)
T ss_dssp TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBH
T ss_pred CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCH
Confidence 9999999999999764 4556669999999999999997 99988 677 89999
Q ss_pred hHHHHHhhhcccCCCCceEEEEeccccHHH--H--HHHHHHhCCCCCCCCCCHHHHH
Q 015759 299 KDYIHRVGRTARAGRTGVAISLVNQYELEW--Y--LQIEKLIGKKLPEFPAEEEEVL 351 (401)
Q Consensus 299 ~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 351 (401)
++|+||+||+|| |+.|. +.|+.+.+... + ..+++..+..+.+...+..+..
T Consensus 491 ~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~~~l~~~~~~ 545 (666)
T 3o8b_A 491 VSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETS 545 (666)
T ss_dssp HHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCcccccCCchHHH
Confidence 999999999999 88999 89988765443 2 4555555444444444444433
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.6e-40 Score=321.98 Aligned_cols=309 Identities=17% Similarity=0.189 Sum_probs=238.5
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.++.|+ |..++||+|||++|.+|++...+ .+..++|++||++||.|.++++..+...+++++..+.|
T Consensus 120 ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL---------~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~g 188 (922)
T 1nkt_A 120 AAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL---------AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILA 188 (922)
T ss_dssp HHHHHTTE--EEECCTTSCHHHHTHHHHHHHHT---------TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT
T ss_pred HHhHhcCC--EEEecCCCccHHHHHHHHHHHHH---------hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC
Confidence 46678888 99999999999999999976555 45579999999999999999999998888999999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHH-HHHHhcCC-----CCCCCCccEEEEcchhhcc-cc---------------ccHH
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLGTLKYLVLDEADRLL-ND---------------DFEK 140 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-----~~~~~~~~~iIiDE~h~~~-~~---------------~~~~ 140 (401)
+.+...+.... +++|+|+||++| .+++..+- .+.+..+.++|+||+|+++ +. +|..
T Consensus 189 g~~~~~r~~~y--~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~ 266 (922)
T 1nkt_A 189 TMTPDERRVAY--NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYT 266 (922)
T ss_dssp TCCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHH
T ss_pred CCCHHHHHHhc--CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHH
Confidence 98765444333 589999999999 77776542 2456789999999999988 32 4778
Q ss_pred HHHHHHHhCC---------CCceEE-----------------EEeecCchHHHHH---H--HHhcC-C-------CeEEE
Q 015759 141 SLDEILNVIP---------RMRQTY-----------------LFSATMTKKVKKL---Q--RACLK-N-------PVKIE 181 (401)
Q Consensus 141 ~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~---~--~~~~~-~-------~~~~~ 181 (401)
.+..++..++ +.+|+. ++|||.+.....+ . ..++. + +..+.
T Consensus 267 ~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vvi 346 (922)
T 1nkt_A 267 EFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLI 346 (922)
T ss_dssp HHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEE
T ss_pred HHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEE
Confidence 8999999998 678888 8999986533222 1 11111 1 11111
Q ss_pred ecc-----------------------------cccccccce---------------------------------------
Q 015759 182 AAS-----------------------------KYSTVDTLK--------------------------------------- 193 (401)
Q Consensus 182 ~~~-----------------------------~~~~~~~~~--------------------------------------- 193 (401)
+.. .......+.
T Consensus 347 VDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn 426 (922)
T 1nkt_A 347 VDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTN 426 (922)
T ss_dssp BCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCS
T ss_pred EecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCC
Confidence 100 000000000
Q ss_pred --------EEEEEcCCCChhHHHHHHHHh--cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhc
Q 015759 194 --------QQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF 263 (401)
Q Consensus 194 --------~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 263 (401)
..+.......|...+...+.. ..+.++||||+|++.++.+++.|++.|+.+..+|+++...++..+.+.|
T Consensus 427 ~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~ag 506 (922)
T 1nkt_A 427 MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAG 506 (922)
T ss_dssp SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTT
T ss_pred CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcC
Confidence 012223333455556665543 3677999999999999999999999999999999999888887888888
Q ss_pred cCCCceEEEEcCCCCCCCCCCCC----------------------------------------------------CEEEE
Q 015759 264 KAGECNILICTDVASRGLDIPSV----------------------------------------------------DMVIN 291 (401)
Q Consensus 264 ~~~~~~vLv~T~~~~~Gid~~~~----------------------------------------------------~~vi~ 291 (401)
+.| .|+|||+++++|+|++.. .+||+
T Consensus 507 r~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~ 584 (922)
T 1nkt_A 507 RRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG 584 (922)
T ss_dssp STT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE
T ss_pred CCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe
Confidence 887 699999999999999864 49999
Q ss_pred ecCCCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 292 YDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 292 ~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
++.|.|...|.|++||+||.|.+|.+++|++.+|.
T Consensus 585 te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 585 TERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp CSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999999999999999988764
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-41 Score=335.20 Aligned_cols=299 Identities=19% Similarity=0.231 Sum_probs=219.0
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQ 89 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~ 89 (401)
++++++||||||||++|++|++..+. .+.+++|++||++|+.|+++.+.++....++++..++|+.+....
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~---------~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r 460 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYE---------AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEK 460 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHH---------HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHH
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHH---------cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHH
Confidence 59999999999999999999998775 456799999999999999999999988788999999999876654
Q ss_pred HHH---h-CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 90 TLA---L-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 90 ~~~---~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
... + ...++|+|+||+.+.+ ...+.++++||+||+|++.... ...+......+++++||||+.+.
T Consensus 461 ~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~ 529 (780)
T 1gm5_A 461 EKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGVKQ-----REALMNKGKMVDTLVMSATPIPR 529 (780)
T ss_dssp HHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC----------CCCCSSSSCCCEEEEESSCCCH
T ss_pred HHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhHHH-----HHHHHHhCCCCCEEEEeCCCCHH
Confidence 322 2 2358999999998744 2467889999999999863322 11122223457899999999776
Q ss_pred HHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHh-cCCCCEEEEecchH--------HHHHHHHH
Q 015759 166 VKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE-VSASSTMVFTRTCD--------ATRLLALM 236 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ivf~~~~~--------~~~~l~~~ 236 (401)
...+......+...+..... ....+. ....+.......+..+... ..+.+++|||++++ .++.+++.
T Consensus 530 tl~~~~~g~~~~s~i~~~p~--~r~~i~--~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~ 605 (780)
T 1gm5_A 530 SMALAFYGDLDVTVIDEMPP--GRKEVQ--TMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEY 605 (780)
T ss_dssp HHHHHHTCCSSCEEECCCCS--SCCCCE--ECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHS
T ss_pred HHHHHHhCCcceeeeeccCC--CCcceE--EEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHH
Confidence 54433321111122211111 111121 1122223233333333333 25789999999764 47888888
Q ss_pred HHh---cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCC-ChhHHHHHhhhcccCC
Q 015759 237 LRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPT-NSKDYIHRVGRTARAG 312 (401)
Q Consensus 237 l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~-s~~~~~Q~~GR~~R~g 312 (401)
|.+ .+..+..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|. +...|.||+||+||.|
T Consensus 606 L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g 685 (780)
T 1gm5_A 606 LSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG 685 (780)
T ss_dssp GGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS
T ss_pred HHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC
Confidence 887 478899999999999999999999999999999999999999999999999999995 7889999999999999
Q ss_pred CCceEEEEeccccHHHHHHH
Q 015759 313 RTGVAISLVNQYELEWYLQI 332 (401)
Q Consensus 313 ~~g~~i~~~~~~~~~~~~~~ 332 (401)
+.|.|++++++.+......+
T Consensus 686 ~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 686 QEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp TTCEEECCCCSCCHHHHHHH
T ss_pred CCCEEEEEECCCChHHHHHH
Confidence 99999999985444433333
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.7e-41 Score=329.82 Aligned_cols=289 Identities=17% Similarity=0.161 Sum_probs=219.2
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.+++|+|++++||||||||++|++|++..+.. .+.++||++||++|+.|+.+.+... .+. +.+
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--------~~~~vLvl~PtreLa~Qi~~~l~~~------~v~-~~~ 244 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--------RRLRTLILAPTRVVAAEMEEALRGL------PIR-YQT 244 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTS------CEE-ECC
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCeEEEEcChHHHHHHHHHHhcCC------cee-Eec
Confidence 6789999999999999999999999999998865 4568999999999999999888632 222 222
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-CCceEEEEeec
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSAT 161 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 161 (401)
.... .....+..+.++|.+.+...+.... .+.++++||+||||++ +.++...+..+...++ +..|+++||||
T Consensus 245 ~~l~----~~~tp~~~i~~~t~~~l~~~l~~~~--~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT 317 (618)
T 2whx_A 245 PAVK----SDHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTAT 317 (618)
T ss_dssp TTSS----CCCCSSSCEEEEEHHHHHHHHHHCS--SCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSS
T ss_pred ccce----eccCCCceEEEEChHHHHHHHhccc--cccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECC
Confidence 1100 0111235677889888887666643 5788999999999987 6667777777777665 56899999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcC
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLG 241 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~ 241 (401)
++..+..+.. .++..+...... +.......+. .+.. ..+++||||++++.++.+++.|++.+
T Consensus 318 ~~~~~~~~~~---~~~~~~~v~~~~-------------~~~~~~~ll~-~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g 379 (618)
T 2whx_A 318 PPGSTDPFPQ---SNSPIEDIEREI-------------PERSWNTGFD-WITD-YQGKTVWFVPSIKAGNDIANCLRKSG 379 (618)
T ss_dssp CTTCCCSSCC---CSSCEEEEECCC-------------CSSCCSSSCH-HHHH-CCSCEEEECSSHHHHHHHHHHHHHTT
T ss_pred Cchhhhhhhc---cCCceeeecccC-------------CHHHHHHHHH-HHHh-CCCCEEEEECChhHHHHHHHHHHHcC
Confidence 9876432211 122222222111 1111111122 2222 36799999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEE--------------------EEecCCCChhHH
Q 015759 242 QRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMV--------------------INYDIPTNSKDY 301 (401)
Q Consensus 242 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~v--------------------i~~~~p~s~~~~ 301 (401)
+.+..+|++ +|.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.+.++|
T Consensus 380 ~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~y 454 (618)
T 2whx_A 380 KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASA 454 (618)
T ss_dssp CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHH
T ss_pred CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHH
Confidence 999999985 678899999999999999999999999997 8887 788889999999
Q ss_pred HHHhhhcccCCC-CceEEEEec---cccHHHHHHHHHHh
Q 015759 302 IHRVGRTARAGR-TGVAISLVN---QYELEWYLQIEKLI 336 (401)
Q Consensus 302 ~Q~~GR~~R~g~-~g~~i~~~~---~~~~~~~~~~~~~~ 336 (401)
+||+||+||.|. .|.+++++. +.+...+..+++.+
T Consensus 455 iQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 455 AQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred HHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 999999999975 899999997 66766666666643
No 40
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.9e-40 Score=338.73 Aligned_cols=292 Identities=19% Similarity=0.178 Sum_probs=227.0
Q ss_pred CCc--cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 8 AGK--DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 8 ~g~--~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
+|+ |+++++|||+|||++++.+++..+. .+.+++|++||++|+.|+++.+.++....++++..+++..+
T Consensus 621 ~g~p~d~ll~~~TGsGKT~val~aa~~~~~---------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~ 691 (1151)
T 2eyq_A 621 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 691 (1151)
T ss_dssp SSSCCEEEEECCCCTTTHHHHHHHHHHHHT---------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSC
T ss_pred cCCcCcEEEECCCCCCHHHHHHHHHHHHHH---------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 365 9999999999999999888777654 56689999999999999999999887777889998888766
Q ss_pred hHHHHHH---h-CCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 86 MMQQTLA---L-GKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 86 ~~~~~~~---~-~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
....... + ...++|+|+||+.+. . ...+.++++||+||+|++. ......+..++...++++||||
T Consensus 692 ~~~~~~~~~~l~~g~~dIvV~T~~ll~----~--~~~~~~l~lvIiDEaH~~g-----~~~~~~l~~l~~~~~vl~lSAT 760 (1151)
T 2eyq_A 692 AKEQTQILAEVAEGKIDILIGTHKLLQ----S--DVKFKDLGLLIVDEEHRFG-----VRHKERIKAMRANVDILTLTAT 760 (1151)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECTHHHH----S--CCCCSSEEEEEEESGGGSC-----HHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHh----C--CccccccceEEEechHhcC-----hHHHHHHHHhcCCCCEEEEcCC
Confidence 5443322 2 235899999998663 2 2467899999999999842 2334445555566789999999
Q ss_pred CchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHh-cCCCCEEEEecchHHHHHHHHHHHhc
Q 015759 162 MTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE-VSASSTMVFTRTCDATRLLALMLRNL 240 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~l~~~ 240 (401)
+.+....+....+.++..+..... ....+...+.. .........++.. ..+++++|||++++.++.+++.|++.
T Consensus 761 p~p~~l~~~~~~~~~~~~i~~~~~--~r~~i~~~~~~---~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~ 835 (1151)
T 2eyq_A 761 PIPRTLNMAMSGMRDLSIIATPPA--RRLAVKTFVRE---YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 835 (1151)
T ss_dssp CCCHHHHHHHTTTSEEEECCCCCC--BCBCEEEEEEE---CCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH
T ss_pred CChhhHHHHHhcCCCceEEecCCC--CccccEEEEec---CCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh
Confidence 987766665554443333222111 11122222222 2223333333333 36789999999999999999999988
Q ss_pred --CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecC-CCChhHHHHHhhhcccCCCCceE
Q 015759 241 --GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI-PTNSKDYIHRVGRTARAGRTGVA 317 (401)
Q Consensus 241 --~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~-p~s~~~~~Q~~GR~~R~g~~g~~ 317 (401)
+..+..+||+|+..+|.+++++|.+|+.+|||||+++++|+|+|++++||+++. +++..+|.||+||+||.|+.|.|
T Consensus 836 ~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~ 915 (1151)
T 2eyq_A 836 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 915 (1151)
T ss_dssp CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEE
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEE
Confidence 789999999999999999999999999999999999999999999999999988 57999999999999999999999
Q ss_pred EEEeccc
Q 015759 318 ISLVNQY 324 (401)
Q Consensus 318 i~~~~~~ 324 (401)
++++.+.
T Consensus 916 ~ll~~~~ 922 (1151)
T 2eyq_A 916 WLLTPHP 922 (1151)
T ss_dssp EEEECCG
T ss_pred EEEECCc
Confidence 9998765
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.4e-41 Score=328.08 Aligned_cols=299 Identities=13% Similarity=0.124 Sum_probs=220.1
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
+.+++++++++++|||+|||++++.++...+.. ...++||++|+++|+.||.+++.+++...++.+..++|+
T Consensus 123 ~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~ 194 (510)
T 2oca_A 123 FEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGG 194 (510)
T ss_dssp HHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH--------CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGG
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC--------CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecC
Confidence 455677999999999999999999887776643 344899999999999999999999866556788888888
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
.+...+ .....+|+|+||+.+... ....+.++++||+||+|++.. ..+..++..+++..+++++|||++
T Consensus 195 ~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 195 ASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp CCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred Cccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCC
Confidence 665443 445689999999976432 223567899999999998765 456677777877788999999997
Q ss_pred hHHHHHHH-HhcCCCeEEEeccccc------ccccceEEEEEcC---------------------CCChhHHHHHHHHhc
Q 015759 164 KKVKKLQR-ACLKNPVKIEAASKYS------TVDTLKQQYRFVP---------------------AKYKDCYLVYILTEV 215 (401)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---------------------~~~~~~~l~~~l~~~ 215 (401)
........ ..+..+..+....... ....+.......+ ...+...+..++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 343 (510)
T 2oca_A 264 DGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKL 343 (510)
T ss_dssp GCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHH
Confidence 65322111 1122222222111100 0000111111111 011222233334333
Q ss_pred ---CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEc-CCCCCCCCCCCCCEEEE
Q 015759 216 ---SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT-DVASRGLDIPSVDMVIN 291 (401)
Q Consensus 216 ---~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T-~~~~~Gid~~~~~~vi~ 291 (401)
.+.++||||+ .+.++.+++.|.+.+..+..+||+++..+|.++++.|.+|+.+||||| +++++|+|+|++++||+
T Consensus 344 ~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~ 422 (510)
T 2oca_A 344 AQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL 422 (510)
T ss_dssp HTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE
T ss_pred HhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE
Confidence 3455666666 888999999999998899999999999999999999999999999999 99999999999999999
Q ss_pred ecCCCChhHHHHHhhhcccCCCCceEEEEec
Q 015759 292 YDIPTNSKDYIHRVGRTARAGRTGVAISLVN 322 (401)
Q Consensus 292 ~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~ 322 (401)
+++|+++..|.|++||+||.|+.+.++.+++
T Consensus 423 ~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 423 AHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred eCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999998764444444
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.2e-41 Score=318.40 Aligned_cols=278 Identities=17% Similarity=0.218 Sum_probs=195.1
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
++++|+|++++||||||||++|++|++..+.. .+.+++|++||++|+.|+++.+..+. +. ...+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~--------~~~~~lil~Ptr~La~Q~~~~l~~~~----v~--~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--------RRLRTLVLAPTRVVLSEMKEAFHGLD----VK--FHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC----EE--EESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh--------cCCeEEEEcchHHHHHHHHHHHhcCC----eE--Eecccc
Confidence 57899999999999999999999999987765 56689999999999999999887542 22 111110
Q ss_pred ChHHHHHHhCCCCCEEEECchHHH---------HHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC-CCCce
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLM---------DHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQ 154 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~---------~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~ 154 (401)
-.++||+++. ..+... ..+.++++||+||+|++ +..+...+..+.... +...|
T Consensus 70 --------------~~v~Tp~~l~~~l~~~~l~~~~~~~--~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~ 132 (440)
T 1yks_A 70 --------------SAHGSGREVIDAMCHATLTYRMLEP--TRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESA 132 (440)
T ss_dssp --------------CCCCCSSCCEEEEEHHHHHHHHTSS--SCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCE
T ss_pred --------------eeccCCccceeeecccchhHhhhCc--ccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCce
Confidence 0255555443 222221 24788999999999987 444433333333332 35689
Q ss_pred EEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHH
Q 015759 155 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLA 234 (401)
Q Consensus 155 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~ 234 (401)
+++||||+++.+..+... ..+. ......++.......+..+.. .++++||||++++.++.++
T Consensus 133 ~l~~SAT~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~ 194 (440)
T 1yks_A 133 TILMTATPPGTSDEFPHS--NGEI--------------EDVQTDIPSEPWNTGHDWILA--DKRPTAWFLPSIRAANVMA 194 (440)
T ss_dssp EEEECSSCTTCCCSSCCC--SSCE--------------EEEECCCCSSCCSSSCHHHHH--CCSCEEEECSCHHHHHHHH
T ss_pred EEEEeCCCCchhhhhhhc--CCCe--------------eEeeeccChHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHH
Confidence 999999998753322111 0111 111111222221222222222 3689999999999999999
Q ss_pred HHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEE-------------------ecCC
Q 015759 235 LMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN-------------------YDIP 295 (401)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~-------------------~~~p 295 (401)
+.|++.++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ ++.|
T Consensus 195 ~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p 269 (440)
T 1yks_A 195 ASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLR 269 (440)
T ss_dssp HHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccc
Confidence 999999999999999 4578899999999999999999999999999 999986 8999
Q ss_pred CChhHHHHHhhhcccC-CCCceEEEEe---ccccHHHHHHHHHHh
Q 015759 296 TNSKDYIHRVGRTARA-GRTGVAISLV---NQYELEWYLQIEKLI 336 (401)
Q Consensus 296 ~s~~~~~Q~~GR~~R~-g~~g~~i~~~---~~~~~~~~~~~~~~~ 336 (401)
.+..+|+||+||+||. |+.|.|++++ ++.+...+..++..+
T Consensus 270 ~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 270 ISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred cCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 9999999999999998 6789999996 566666666666654
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=1.8e-40 Score=313.63 Aligned_cols=277 Identities=19% Similarity=0.162 Sum_probs=204.8
Q ss_pred ccccccCCccE-EEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEE
Q 015759 2 LLWFCDAGKDL-IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~-ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~ 80 (401)
++|.+++|+++ ++++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+.. +.+...
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~ 76 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--------RRLRTLILAPTRVVAAEMEEALRG------LPIRYQ 76 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTT------SCEEEC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--------cCCcEEEECCCHHHHHHHHHHhcC------ceeeee
Confidence 47888888887 999999999999999999987765 567899999999999999998853 222221
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHH-hCCCCceEEEEe
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILN-VIPRMRQTYLFS 159 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~-~~~~~~~~i~~S 159 (401)
.+.... ....+..|.++|++.+.+.+.... .+.++++||+||+|++ +..+...+..+.. ..++..|+++||
T Consensus 77 ~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~~--~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~S 148 (451)
T 2jlq_A 77 TPAVKS-----DHTGREIVDLMCHATFTTRLLSST--RVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMT 148 (451)
T ss_dssp CTTCSC-----CCCSSCCEEEEEHHHHHHHHHHCS--CCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred eccccc-----cCCCCceEEEEChHHHHHHhhCcc--cccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEc
Confidence 111110 112346799999999988887653 5788999999999976 4333333333322 234568999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHh
Q 015759 160 ATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN 239 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~ 239 (401)
||++.....+ ....+..+....... .... .. +...+.. ..+++||||++++.++.+++.|++
T Consensus 149 AT~~~~~~~~---~~~~~~~~~~~~~~p-~~~~---------~~----~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~ 210 (451)
T 2jlq_A 149 ATPPGSTDPF---PQSNSPIEDIEREIP-ERSW---------NT----GFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 210 (451)
T ss_dssp SSCTTCCCSS---CCCSSCEEEEECCCC-SSCC---------SS----SCHHHHH-CCSCEEEECSSHHHHHHHHHHHHT
T ss_pred cCCCccchhh---hcCCCceEecCccCC-chhh---------HH----HHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHH
Confidence 9997643221 122222222211100 0000 00 1112222 366999999999999999999999
Q ss_pred cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEec--------------------CCCChh
Q 015759 240 LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYD--------------------IPTNSK 299 (401)
Q Consensus 240 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~--------------------~p~s~~ 299 (401)
.++.+..+|+++. ..+++.|++|+.+|||||+++++|+|+|+ ++||++| .|.+..
T Consensus 211 ~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~ 285 (451)
T 2jlq_A 211 SGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 285 (451)
T ss_dssp TTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred cCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHH
Confidence 9999999999764 57899999999999999999999999999 9999998 999999
Q ss_pred HHHHHhhhcccCCC-CceEEEEecc
Q 015759 300 DYIHRVGRTARAGR-TGVAISLVNQ 323 (401)
Q Consensus 300 ~~~Q~~GR~~R~g~-~g~~i~~~~~ 323 (401)
+|+||+||+||.|. .|.++++...
T Consensus 286 ~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 286 SAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred HHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999997 7888888743
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.9e-40 Score=346.55 Aligned_cols=323 Identities=18% Similarity=0.230 Sum_probs=236.6
Q ss_pred ccc-ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhc--CCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEE
Q 015759 3 LWF-CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ--RTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAV 79 (401)
Q Consensus 3 l~~-~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~--~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~ 79 (401)
+|. +.+++|++++||||||||+++.++++..+....... ....+.++||++|+++|+.|.++.+.+.....++++..
T Consensus 88 ~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~ 167 (1724)
T 4f92_B 88 YRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAE 167 (1724)
T ss_dssp HHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEE
T ss_pred HHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 443 457899999999999999999999999987643221 12357789999999999999999999888888999999
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC-CCCCCccEEEEcchhhccccccHHHHHHHHH-------hCCC
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEILN-------VIPR 151 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~-------~~~~ 151 (401)
++|+.....+. ..+++|+|||||++...+..... ..++.+++||+||+|.+.+ ..+..++.++. .+++
T Consensus 168 ~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~ 243 (1724)
T 4f92_B 168 LTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQE 243 (1724)
T ss_dssp CCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHHHHHHHhCCC
Confidence 99987653322 23589999999998655544321 1367899999999996654 57776665543 3466
Q ss_pred CceEEEEeecCchHHHHHHHHhcCCC--e-EEEecccccccccceEEEEEcCCCChhH-------HHHHHH-HhcCCCCE
Q 015759 152 MRQTYLFSATMTKKVKKLQRACLKNP--V-KIEAASKYSTVDTLKQQYRFVPAKYKDC-------YLVYIL-TEVSASST 220 (401)
Q Consensus 152 ~~~~i~~SAT~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~l-~~~~~~~~ 220 (401)
..|++++|||+++. .++.. ++... . ....... ..+..+.+.+..+....... .+...+ ....++++
T Consensus 244 ~~riI~LSATl~N~-~dvA~-wL~~~~~~~~~~~~~~-~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (1724)
T 4f92_B 244 DVRLIGLSATLPNY-EDVAT-FLRVDPAKGLFYFDNS-FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV 320 (1724)
T ss_dssp CCEEEEEECSCTTH-HHHHH-HTTCCHHHHEEECCGG-GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCE
T ss_pred CCcEEEEecccCCH-HHHHH-HhCCCCCCCeEEECCC-CccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcE
Confidence 78999999999753 33333 33221 1 1112222 22223444444444432211 111222 23356799
Q ss_pred EEEecchHHHHHHHHHHHhc-------------------------------------CCceEeecCCCCHHHHHHHHhhc
Q 015759 221 MVFTRTCDATRLLALMLRNL-------------------------------------GQRAIPISGHMSQSKRLGALNKF 263 (401)
Q Consensus 221 ivf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~~f 263 (401)
||||++++.|+.+++.|.+. ...++.+|++|+.++|..+++.|
T Consensus 321 LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F 400 (1724)
T 4f92_B 321 LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLF 400 (1724)
T ss_dssp EEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHH
Confidence 99999999998888877542 23478999999999999999999
Q ss_pred cCCCceEEEEcCCCCCCCCCCCCCEEEE----ec------CCCChhHHHHHhhhcccCCC--CceEEEEeccccHHHHHH
Q 015759 264 KAGECNILICTDVASRGLDIPSVDMVIN----YD------IPTNSKDYIHRVGRTARAGR--TGVAISLVNQYELEWYLQ 331 (401)
Q Consensus 264 ~~~~~~vLv~T~~~~~Gid~~~~~~vi~----~~------~p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~~~~~~~~ 331 (401)
++|.++|||||++++.|+|+|..++||. |+ .|.++.+|.|++|||||.|. .|.+++++.+.+...+..
T Consensus 401 ~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ 480 (1724)
T 4f92_B 401 ADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLS 480 (1724)
T ss_dssp HTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHH
T ss_pred HCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHH
Confidence 9999999999999999999999999985 44 35689999999999999884 588999988877655544
Q ss_pred H
Q 015759 332 I 332 (401)
Q Consensus 332 ~ 332 (401)
+
T Consensus 481 l 481 (1724)
T 4f92_B 481 L 481 (1724)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.8e-39 Score=340.70 Aligned_cols=317 Identities=16% Similarity=0.189 Sum_probs=234.9
Q ss_pred cccc-cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH-hccCCCceEEEE
Q 015759 3 LWFC-DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA-LGSGISLRCAVL 80 (401)
Q Consensus 3 l~~~-~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~-~~~~~~i~~~~~ 80 (401)
++.+ ..++|++++||||||||+++.+|++..+... .+.++||++|+++|+.|.++.+.+ ++...++++..+
T Consensus 935 ~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l 1007 (1724)
T 4f92_B 935 FNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL 1007 (1724)
T ss_dssp HHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC
T ss_pred HHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE
Confidence 4444 4678999999999999999999999988754 456799999999999999999875 556678999999
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC-CCCCCccEEEEcchhhccccccHHHHHHHHH-------hCCCC
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLNDDFEKSLDEILN-------VIPRM 152 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~-------~~~~~ 152 (401)
+|+........ ..++|+||||+++..++..... ..++++++||+||+|.+.+ ..+..+..++. .+++.
T Consensus 1008 tGd~~~~~~~~---~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~ 1083 (1724)
T 4f92_B 1008 TGETSTDLKLL---GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERP 1083 (1724)
T ss_dssp CSCHHHHHHHH---HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSC
T ss_pred ECCCCcchhhc---CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCC
Confidence 99865433322 3489999999999777665432 2367899999999997766 45665555443 35677
Q ss_pred ceEEEEeecCchHHHHHHHHhcCCC-eEEEecccccccccceEEEEEcCCCChhHH--------HHHHHHhcCCCCEEEE
Q 015759 153 RQTYLFSATMTKKVKKLQRACLKNP-VKIEAASKYSTVDTLKQQYRFVPAKYKDCY--------LVYILTEVSASSTMVF 223 (401)
Q Consensus 153 ~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~l~~~~~~~~ivf 223 (401)
.|++++|||+++. ..+.......+ ..+..... ..+..+..++...+....... ...+.....++++|||
T Consensus 1084 ~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF 1161 (1724)
T 4f92_B 1084 IRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVF 1161 (1724)
T ss_dssp CEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEE
T ss_pred ceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeee
Confidence 8999999999763 34433332222 22222222 222334444444443322211 1222334577899999
Q ss_pred ecchHHHHHHHHHHHhc----------------------------------CCceEeecCCCCHHHHHHHHhhccCCCce
Q 015759 224 TRTCDATRLLALMLRNL----------------------------------GQRAIPISGHMSQSKRLGALNKFKAGECN 269 (401)
Q Consensus 224 ~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 269 (401)
|++++.|+.++..|... ...++.+|++|++.+|..+++.|++|.++
T Consensus 1162 ~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~ 1241 (1724)
T 4f92_B 1162 VPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1241 (1724)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe
Confidence 99999998888766431 23588999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEE----ec------CCCChhHHHHHhhhcccCCC--CceEEEEeccccHHHHHHH
Q 015759 270 ILICTDVASRGLDIPSVDMVIN----YD------IPTNSKDYIHRVGRTARAGR--TGVAISLVNQYELEWYLQI 332 (401)
Q Consensus 270 vLv~T~~~~~Gid~~~~~~vi~----~~------~p~s~~~~~Q~~GR~~R~g~--~g~~i~~~~~~~~~~~~~~ 332 (401)
|||||+.+++|+|+|...+||. || .|.++.+|.|++|||||.|. .|.+++++.+.+...++.+
T Consensus 1242 VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1242 VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 9999999999999999888883 22 35789999999999999996 5899999988876665443
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.1e-39 Score=317.01 Aligned_cols=284 Identities=19% Similarity=0.229 Sum_probs=201.9
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
+|+|++++||||||||++|++|++..+.. .+.++||++||++|+.|+++.+..+. +. ...+...
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~--------~~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l~-- 303 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQ--------KRLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAVQ-- 303 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC-----
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCcEEEEccHHHHHHHHHHHHhcCC----ee--eeccccc--
Confidence 89999999999999999999999988764 56789999999999999999887542 22 1111000
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-CCceEEEEeecCchHH
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTKKV 166 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~ 166 (401)
..-..+.-+-+.+.+.+...+... ..+.++++||+||+|++ +..+...+..+...++ ...|+++||||+++.+
T Consensus 304 ---~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i 377 (673)
T 2wv9_A 304 ---REHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTS 377 (673)
T ss_dssp ---CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred ---ccCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhh
Confidence 000112234455555555555443 35789999999999987 3222233333333332 5689999999998653
Q ss_pred HHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEe
Q 015759 167 KKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246 (401)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~ 246 (401)
..+... ..+. .. ....++.......+..+.. .++++||||++++.++.+++.|++.++.+..
T Consensus 378 ~~~~~~--~~~i-~~-------------v~~~~~~~~~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~ 439 (673)
T 2wv9_A 378 DPFPDT--NSPV-HD-------------VSSEIPDRAWSSGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQ 439 (673)
T ss_dssp CSSCCC--SSCE-EE-------------EECCCCSSCCSSCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred hhhccc--CCce-EE-------------EeeecCHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEE
Confidence 221110 0111 10 0001111111112222222 5789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEE--------------------ecCCCChhHHHHHhh
Q 015759 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN--------------------YDIPTNSKDYIHRVG 306 (401)
Q Consensus 247 ~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~--------------------~~~p~s~~~~~Q~~G 306 (401)
+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+ |+.|.+.++|+||+|
T Consensus 440 lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~G 514 (673)
T 2wv9_A 440 LNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRG 514 (673)
T ss_dssp ECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHT
T ss_pred eChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhh
Confidence 9994 789999999999999999999999999999 999998 568999999999999
Q ss_pred hcccC-CCCceEEEEe---ccccHHHHHHHHHHh
Q 015759 307 RTARA-GRTGVAISLV---NQYELEWYLQIEKLI 336 (401)
Q Consensus 307 R~~R~-g~~g~~i~~~---~~~~~~~~~~~~~~~ 336 (401)
|+||. |+.|.+++++ ++.+...+..++..+
T Consensus 515 RaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 515 RVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp TSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 99999 6889999996 456655555555443
No 47
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.5e-39 Score=307.88 Aligned_cols=276 Identities=19% Similarity=0.210 Sum_probs=195.7
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
.++.+|+++++++|||||||++|++|++..+.. .+.++||++||++|+.|+++.+..+ .+....+.
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--------~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~ 81 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--------QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSA 81 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEECSHHHHHHHHHHTTTS------CEEECC--
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCCcEEEECchHHHHHHHHHHhcCc------eEeEEecc
Confidence 357789999999999999999999999988764 5678999999999999999988732 22221111
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHh-CCCCceEEEEeecC
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV-IPRMRQTYLFSATM 162 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~ 162 (401)
... .-..+..+.++|.+.+...+.... .+.++++||+||+|++ +......+..+... .++..|+++||||+
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~~--~l~~~~~iViDEaH~~-~~~~~~~~~~~~~~~~~~~~~~il~SAT~ 153 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSPN--RVPNYNLFVMDEAHFT-DPASIAARGYIATKVELGEAAAIFMTATP 153 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSCC---CCCCSEEEESSTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhccc--cccCCcEEEEECCccC-CchhhHHHHHHHHHhccCCccEEEEEcCC
Confidence 110 011235578889998887776643 5789999999999974 11111111111111 13567899999999
Q ss_pred chHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCC
Q 015759 163 TKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQ 242 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 242 (401)
+..+..+... ..|.... . ...+...... ....+.. .++++||||++++.++.+++.|+..++
T Consensus 154 ~~~~~~~~~~--~~pi~~~-~-------------~~~~~~~~~~-~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~ 215 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHDL-Q-------------DEIPDRAWSS-GYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGK 215 (459)
T ss_dssp TTCCCSSCCC--SSCEEEE-E-------------CCCCSSCCSS-CCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CcchhhhccC--CCCeEEe-c-------------ccCCcchhHH-HHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 8653222110 1121111 0 0111111000 1122222 368999999999999999999999999
Q ss_pred ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEE--------------------ecCCCChhHHH
Q 015759 243 RAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVIN--------------------YDIPTNSKDYI 302 (401)
Q Consensus 243 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~--------------------~~~p~s~~~~~ 302 (401)
.+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+|+
T Consensus 216 ~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~ 290 (459)
T 2z83_A 216 KVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAA 290 (459)
T ss_dssp CEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHH
T ss_pred cEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHH
Confidence 99999995 6778999999999999999999999999999 99999 77999999999
Q ss_pred HHhhhcccCCC-CceEEEEeccc
Q 015759 303 HRVGRTARAGR-TGVAISLVNQY 324 (401)
Q Consensus 303 Q~~GR~~R~g~-~g~~i~~~~~~ 324 (401)
||+||+||.|. .|.+++++.+.
T Consensus 291 QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 291 QRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHTTSSCCTTCCCEEEEECSCC
T ss_pred HhccccCCCCCCCCeEEEEEccc
Confidence 99999999997 89999999764
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=9.3e-39 Score=300.02 Aligned_cols=269 Identities=16% Similarity=0.169 Sum_probs=191.9
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
+|+++++++|||||||++|++|++..+.. .+.+++|++||++|+.|+++.+. ++.+....++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-
Confidence 48999999999999999999999976654 56789999999999999998775 2344444443211
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhC-CCCceEEEEeecCchHH
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVI-PRMRQTYLFSATMTKKV 166 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~ 166 (401)
.-..+..+.++|.+.+...+... ..+.++++||+||+|++ +..+......+.... +...|+++||||+++.+
T Consensus 66 ----~~~~~~~~~~~~~~~l~~~l~~~--~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 ----ERTGNEIVDFMCHSTFTMKLLQG--VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHHT--CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred ----cCCCCceEEEEchHHHHHHHhcC--ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 11123567788988887766663 35788999999999986 433333444443332 45689999999998742
Q ss_pred HHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEe
Q 015759 167 KKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIP 246 (401)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~ 246 (401)
..+... ..+. ... ...++.... ..+...+.. .++++||||++++.++.+++.|++.+..+..
T Consensus 139 ~~~~~~--~~~i-~~~-------------~~~~~~~~~-~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 139 EAFPPS--NSPI-IDE-------------ETRIPDKAW-NSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp CSSCCC--SSCC-EEE-------------ECCCCSSCC-SSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhcCC--CCce-eec-------------cccCCHHHH-HHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 211100 0111 000 001111111 111222333 3678999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCE-----------------EEEecCCCChhHHHHHhhhcc
Q 015759 247 ISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDM-----------------VINYDIPTNSKDYIHRVGRTA 309 (401)
Q Consensus 247 ~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~-----------------vi~~~~p~s~~~~~Q~~GR~~ 309 (401)
+||+ +|.++++.|++|+.+|||||+++++|+|+| +.+ ||+++.|.+..+|.||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 678899999999999999999
Q ss_pred cCCC-CceEEEEe
Q 015759 310 RAGR-TGVAISLV 321 (401)
Q Consensus 310 R~g~-~g~~i~~~ 321 (401)
|.|. .+.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985 45555555
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=6e-40 Score=313.70 Aligned_cols=284 Identities=18% Similarity=0.198 Sum_probs=209.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCce-EEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLR-CAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~-~~~~~ 81 (401)
++.+++++++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++ ++. +..++
T Consensus 102 i~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~ 165 (472)
T 2fwr_A 102 LERWLVDKRGCIVLPTGSGKTHVAMAAINEL------------STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFS 165 (472)
T ss_dssp HHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBS
T ss_pred HHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------------CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEEC
Confidence 3456778899999999999999998876642 456999999999999999999985 577 88888
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+... ..+|+|+||+++...+... ...+++||+||+|++.+..+.. ++..++ ..+++++|||
T Consensus 166 g~~~~---------~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l~lSAT 227 (472)
T 2fwr_A 166 GRIKE---------LKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLTAT 227 (472)
T ss_dssp SSCBC---------CCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEEEEESC
T ss_pred CCcCC---------cCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEEEEecC
Confidence 77542 4789999999987765431 2458999999999998877654 444554 4679999999
Q ss_pred CchH-------------------HHHHHHHhcCCCeEE--Eeccccc------------------------ccccceEEE
Q 015759 162 MTKK-------------------VKKLQRACLKNPVKI--EAASKYS------------------------TVDTLKQQY 196 (401)
Q Consensus 162 ~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~------------------------~~~~~~~~~ 196 (401)
+... ...+...++..+... ....... ....+...+
T Consensus 228 p~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (472)
T 2fwr_A 228 FEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV 307 (472)
T ss_dssp CCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT
T ss_pred ccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 9731 122211111111110 0000000 000000000
Q ss_pred ---------------------EEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHH
Q 015759 197 ---------------------RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSK 255 (401)
Q Consensus 197 ---------------------~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 255 (401)
..+....+...+..++....++++||||++.+.++.+++.|. +..+||+++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~ 382 (472)
T 2fwr_A 308 MASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREE 382 (472)
T ss_dssp TTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHH
Confidence 001123345667777777788999999999999999999883 668999999999
Q ss_pred HHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCC-ce--EEEEecccc
Q 015759 256 RLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRT-GV--AISLVNQYE 325 (401)
Q Consensus 256 r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~-g~--~i~~~~~~~ 325 (401)
|.+++++|++|+++|||||+++++|+|+|++++||++++|+++..|.|++||+||.|+. +. ++.+++...
T Consensus 383 R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 383 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred HHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999854 33 445565543
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.8e-37 Score=304.79 Aligned_cols=301 Identities=16% Similarity=0.197 Sum_probs=216.3
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc-CCCceEEEEEc
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS-GISLRCAVLVG 82 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~-~~~i~~~~~~~ 82 (401)
.++.+|++++++||||||||+ ++|++. ....... ..+.++++++|+++|+.|+++.+.+... ..+..+.....
T Consensus 104 ~~l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~~~--~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~ 177 (773)
T 2xau_A 104 KLYQNNQIMVFVGETGSGKTT--QIPQFV--LFDEMPH--LENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR 177 (773)
T ss_dssp HHHHHCSEEEEECCTTSSHHH--HHHHHH--HHHHCGG--GGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEET
T ss_pred HHHhCCCeEEEECCCCCCHHH--HHHHHH--HHhcccc--CCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceec
Confidence 456678899999999999998 344442 1111100 0256799999999999999988765432 22222221111
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhh-ccccc-cHHHHHHHHHhCCCCceEEEEee
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADR-LLNDD-FEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~-~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
... ......+|+++||+++.+.+.... .+.++++||+||+|. .++.. ....+..+.... +..|++++||
T Consensus 178 ~~~------~~~~~~~I~v~T~G~l~r~l~~~~--~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SA 248 (773)
T 2xau_A 178 FEN------KTSNKTILKYMTDGMLLREAMEDH--DLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSA 248 (773)
T ss_dssp TEE------ECCTTCSEEEEEHHHHHHHHHHST--TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEES
T ss_pred ccc------ccCCCCCEEEECHHHHHHHHhhCc--cccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEec
Confidence 100 112358899999999998877643 578999999999995 44422 234455555554 3578999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHH----HHHHHHhcCCCCEEEEecchHHHHHHHHH
Q 015759 161 TMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCY----LVYILTEVSASSTMVFTRTCDATRLLALM 236 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~ivf~~~~~~~~~l~~~ 236 (401)
|++.. .+ ..++.....+....... .+...|...+....... +..+.....++++||||++++.++.+++.
T Consensus 249 T~~~~--~l-~~~~~~~~vi~v~gr~~---pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~ 322 (773)
T 2xau_A 249 TLDAE--KF-QRYFNDAPLLAVPGRTY---PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRK 322 (773)
T ss_dssp CSCCH--HH-HHHTTSCCEEECCCCCC---CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHH
T ss_pred cccHH--HH-HHHhcCCCcccccCccc---ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHH
Confidence 99642 33 33445444454443322 34444443333332222 22233344688999999999999999999
Q ss_pred HHh-----------cCCceEeecCCCCHHHHHHHHhhcc-----CCCceEEEEcCCCCCCCCCCCCCEEEEecC------
Q 015759 237 LRN-----------LGQRAIPISGHMSQSKRLGALNKFK-----AGECNILICTDVASRGLDIPSVDMVINYDI------ 294 (401)
Q Consensus 237 l~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~------ 294 (401)
|.+ .++.+..+||+++..+|..+++.|. +|..+|||||+++++|+|+|++++||+++.
T Consensus 323 L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~y 402 (773)
T 2xau_A 323 ISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVY 402 (773)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEE
T ss_pred HHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceee
Confidence 985 5778999999999999999999999 999999999999999999999999999777
Q ss_pred ------------CCChhHHHHHhhhcccCCCCceEEEEeccccH
Q 015759 295 ------------PTNSKDYIHRVGRTARAGRTGVAISLVNQYEL 326 (401)
Q Consensus 295 ------------p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~ 326 (401)
|.|..+|.||+||+||. ..|.|+.++++.+.
T Consensus 403 d~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 403 NPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp ETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred ccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999998 78999999976653
No 51
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=2.8e-36 Score=294.00 Aligned_cols=291 Identities=18% Similarity=0.201 Sum_probs=212.3
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
.++|++++++||||||||+. ++..+... ...+|++|+++|+.|+++.+.+. ++.+..++|+..
T Consensus 152 ~l~rk~vlv~apTGSGKT~~----al~~l~~~---------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~ 214 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTYH----AIQKYFSA---------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEER 214 (677)
T ss_dssp TSCCEEEEEECCTTSSHHHH----HHHHHHHS---------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCE
T ss_pred hcCCCEEEEEcCCCCCHHHH----HHHHHHhc---------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCee
Confidence 36899999999999999983 44444432 23589999999999999999886 467888888755
Q ss_pred hHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCC-CCceEEEEeecCch
Q 015759 86 MMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIP-RMRQTYLFSATMTK 164 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~ 164 (401)
... .......+++++|++.+. ....++++|+||+|++.+.+++..+..++..++ ...+++++|||. +
T Consensus 215 ~iv--~TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~ 282 (677)
T 3rc3_A 215 VTV--QPNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-D 282 (677)
T ss_dssp ECC--STTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-H
T ss_pred EEe--cCCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-H
Confidence 411 000113678888876541 245789999999999999999999999888887 667899999994 3
Q ss_pred HHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCce
Q 015759 165 KVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRA 244 (401)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~ 244 (401)
.+..+.... .....+........ ..+ ..... ..+... ..+.+|||++++.++.+++.|.+.+..+
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r~~~-----l~~--~~~~l------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v 347 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKRLTP-----ISV--LDHAL------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLES 347 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCCSSC-----EEE--CSSCC------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhc-CCceEEEEeeecch-----HHH--HHHHH------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCe
Confidence 344444332 33333322111110 000 01100 011112 3456899999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHhhccC--CCceEEEEcCCCCCCCCCCCCCEEEEecC--------------CCChhHHHHHhhhc
Q 015759 245 IPISGHMSQSKRLGALNKFKA--GECNILICTDVASRGLDIPSVDMVINYDI--------------PTNSKDYIHRVGRT 308 (401)
Q Consensus 245 ~~~~~~~~~~~r~~~~~~f~~--~~~~vLv~T~~~~~Gid~~~~~~vi~~~~--------------p~s~~~~~Q~~GR~ 308 (401)
..+||+|++.+|..+++.|++ |..+|||||+++++|+|+ ++++||+++. |.+..+|+||+||+
T Consensus 348 ~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRA 426 (677)
T 3rc3_A 348 AVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRA 426 (677)
T ss_dssp EEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTB
T ss_pred eeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCC
Confidence 999999999999999999999 889999999999999999 9999999998 88999999999999
Q ss_pred ccCCCC---ceEEEEeccccHHHHHHHHHHhCCCCCC
Q 015759 309 ARAGRT---GVAISLVNQYELEWYLQIEKLIGKKLPE 342 (401)
Q Consensus 309 ~R~g~~---g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 342 (401)
||.|.+ |.|+.+. +.+...+..+.......+..
T Consensus 427 GR~g~~g~~G~v~~l~-~~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 427 GRFSSRFKEGEVTTMN-HEDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp TCTTSSCSSEEEEESS-TTHHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCCCCEEEEEEe-cchHHHHHHHHhcCcchhhh
Confidence 999965 5555554 44444455544444344433
No 52
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5e-37 Score=313.63 Aligned_cols=317 Identities=19% Similarity=0.158 Sum_probs=214.6
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
+.++|++++||+|||.+++..+...+... ...++|||||+ +|+.||.+++.+.. ++++..++++.....
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-------~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v~v~~~~~~~~~ 238 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSG-------AAERVLIIVPE-TLQHQWLVEMLRRF---NLRFALFDDERYAEA 238 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTS-------SCCCEEEECCT-TTHHHHHHHHHHHS---CCCCEECCHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhC-------CCCeEEEEeCH-HHHHHHHHHHHHHh---CCCEEEEccchhhhh
Confidence 56899999999999999877555444321 34579999999 99999999997764 456666555432211
Q ss_pred HHH--HhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccH--HHHHHHHHhCCCCceEEEEeecCch
Q 015759 89 QTL--ALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFE--KSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 89 ~~~--~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
... ......+|+|+|++.+.........+....+++||+||+|++...... .....+.....+.++++++||||..
T Consensus 239 ~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 239 QHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQ 318 (968)
T ss_dssp HHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSS
T ss_pred hhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCcc
Confidence 111 112357999999998854321111133557899999999998764321 1122222222234568999999842
Q ss_pred ----HHHHHHHHh----------------------------cCC------------------------------------
Q 015759 165 ----KVKKLQRAC----------------------------LKN------------------------------------ 176 (401)
Q Consensus 165 ----~~~~~~~~~----------------------------~~~------------------------------------ 176 (401)
++..+.... ...
T Consensus 319 n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~ 398 (968)
T 3dmq_A 319 LGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQS 398 (968)
T ss_dssp SCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTT
T ss_pred CCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHH
Confidence 111110000 000
Q ss_pred ----------------CeEEEecc---cccccccceEEE-----------------------------------------
Q 015759 177 ----------------PVKIEAAS---KYSTVDTLKQQY----------------------------------------- 196 (401)
Q Consensus 177 ----------------~~~~~~~~---~~~~~~~~~~~~----------------------------------------- 196 (401)
...+.... ............
T Consensus 399 ~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe~~~~~l~ 478 (968)
T 3dmq_A 399 ARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFE 478 (968)
T ss_dssp THHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSGGGTTTTT
T ss_pred HHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChHHHHHHhh
Confidence 00000000 000000000000
Q ss_pred ----EEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHh-cCCceEeecCCCCHHHHHHHHhhccCCC--ce
Q 015759 197 ----RFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRN-LGQRAIPISGHMSQSKRLGALNKFKAGE--CN 269 (401)
Q Consensus 197 ----~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~ 269 (401)
..+....|...+..++....+.++||||+++..++.+++.|.+ .|+.+..+||+|+..+|..+++.|++|+ ++
T Consensus 479 ~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~ 558 (968)
T 3dmq_A 479 GDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQ 558 (968)
T ss_dssp SSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCE
T ss_pred hhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Confidence 1122334677778888888899999999999999999999995 5999999999999999999999999998 99
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHh
Q 015759 270 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLI 336 (401)
Q Consensus 270 vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~ 336 (401)
|||||+++++|+|+|++++||++|+|+++..|.|++||++|.|+.+.++++....+......+.+..
T Consensus 559 vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 559 VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp EEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred EEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888666554433333334444544
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.3e-36 Score=295.17 Aligned_cols=289 Identities=18% Similarity=0.178 Sum_probs=175.0
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHh-hhcCCCCceeEEEEcCcHHHHHHHH-HHHHHhccCCCceEEEEEcCCCh
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIA-ENQRTVPAFFACVLSPTRELAIQIS-EQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~-~~~~~~~~~~~lil~P~~~L~~q~~-~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
++++++++|||+|||++++. ++..+.... .........++||++|+++|+.|+. +.++.++. .+..+.++
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~----~~~~~~~~--- 269 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGD----ARHKIEGG--- 269 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCS----SEEECCC----
T ss_pred CCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcch----hhhhhhcc---
Confidence 46699999999999999654 444444321 1111124678999999999999999 77776643 33333322
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcC---CCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNT---KGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~---~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
......+|+|+||++|....... ..+....+++||+||||++.... ...+..++..++. .+++++|||+.
T Consensus 270 -----~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~-~~~l~lTATP~ 342 (590)
T 3h1t_A 270 -----KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEP-AFQIGMTATPL 342 (590)
T ss_dssp ------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTT-SEEEEEESSCS
T ss_pred -----CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCc-ceEEEeccccc
Confidence 12346899999999998765421 12345678999999999986532 2455667777764 56999999987
Q ss_pred hHHHHHHHHhcCCCeEEEe-----------------cccccccccceE-------EEEE------cCCC--------Chh
Q 015759 164 KKVKKLQRACLKNPVKIEA-----------------ASKYSTVDTLKQ-------QYRF------VPAK--------YKD 205 (401)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~-------~~~~------~~~~--------~~~ 205 (401)
.........++..+..... .........+.. .... .... .+.
T Consensus 343 ~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 422 (590)
T 3h1t_A 343 REDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKART 422 (590)
T ss_dssp CTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTH
T ss_pred cccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHH
Confidence 5333222333333222110 000000000000 0000 0000 001
Q ss_pred HH----HHHHHHh-cCCCCEEEEecchHHHHHHHHHHHhcCCc--------eEeecCCCCHHHHHHHHhhccCCCce---
Q 015759 206 CY----LVYILTE-VSASSTMVFTRTCDATRLLALMLRNLGQR--------AIPISGHMSQSKRLGALNKFKAGECN--- 269 (401)
Q Consensus 206 ~~----l~~~l~~-~~~~~~ivf~~~~~~~~~l~~~l~~~~~~--------~~~~~~~~~~~~r~~~~~~f~~~~~~--- 269 (401)
.. +...+.. ...+++||||+++..|+.+++.|.+.+.. +..+||+++ ++|..++++|++|+..
T Consensus 423 ~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ 501 (590)
T 3h1t_A 423 DAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPV 501 (590)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCC
T ss_pred HHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCE
Confidence 11 1122222 34589999999999999999999876543 678888875 4799999999998766
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCC
Q 015759 270 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGR 313 (401)
Q Consensus 270 vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~ 313 (401)
|||||+++++|+|+|++++||++++|+|+..|.|++||++|.+.
T Consensus 502 ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 502 ILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 88999999999999999999999999999999999999999875
No 54
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=8.8e-33 Score=262.46 Aligned_cols=331 Identities=18% Similarity=0.171 Sum_probs=233.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC--
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG-- 83 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~-- 83 (401)
+..|+ |..+.||+|||+++.+|++-..+ .+..+.|++|+..||.|-++++..+...+|+++..+...
T Consensus 87 L~~G~--iaEM~TGEGKTLva~lp~~lnAL---------~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~~~~ 155 (822)
T 3jux_A 87 LHEGK--VAEMKTGEGKTLAATMPIYLNAL---------IGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINSLGK 155 (822)
T ss_dssp HHTTC--EEECCTTSCHHHHTHHHHHHHHT---------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEETTTE
T ss_pred HhCCC--hhhccCCCCccHHHHHHHHHHHh---------cCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcCCCc
Confidence 34455 88999999999999999986665 567799999999999999999999988889999998872
Q ss_pred ------------------------------------------------CChHHHHHHhCCCCCEEEECchHH-HHHHhcC
Q 015759 84 ------------------------------------------------VDMMQQTLALGKRPHIVVATPGRL-MDHLTNT 114 (401)
Q Consensus 84 ------------------------------------------------~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~ 114 (401)
.+...+.... .|||+++|..-| .+++...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgTn~EfgFDYLRDn 233 (822)
T 3jux_A 156 SYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGTNNEFGFDYLRDN 233 (822)
T ss_dssp EEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEEHHHHHHHHHHHT
T ss_pred ccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEccCcchhhHhHHhh
Confidence 1111111121 479999998876 3444432
Q ss_pred -----CCCCCCCccEEEEcchhhccccc----------------cH----------------------------------
Q 015759 115 -----KGFSLGTLKYLVLDEADRLLNDD----------------FE---------------------------------- 139 (401)
Q Consensus 115 -----~~~~~~~~~~iIiDE~h~~~~~~----------------~~---------------------------------- 139 (401)
...-...+.+.||||+|.++=.. +.
T Consensus 234 m~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G~~~ 313 (822)
T 3jux_A 234 LVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEGVAK 313 (822)
T ss_dssp SCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHHHHH
T ss_pred ccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHHHHH
Confidence 11234668899999999622100 00
Q ss_pred ----------------HHHHHHHHh------CCC----------------------------------------------
Q 015759 140 ----------------KSLDEILNV------IPR---------------------------------------------- 151 (401)
Q Consensus 140 ----------------~~~~~i~~~------~~~---------------------------------------------- 151 (401)
..+..+... +.+
T Consensus 314 ~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i~~e 393 (822)
T 3jux_A 314 AEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEE 393 (822)
T ss_dssp HHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCCCCC
T ss_pred HHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCCCCC
Confidence 000001000 000
Q ss_pred ---------------CceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceE-EEEEcCCCChhHHHHHHHHhc
Q 015759 152 ---------------MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQ-QYRFVPAKYKDCYLVYILTEV 215 (401)
Q Consensus 152 ---------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~ 215 (401)
..++.+||+|......++...+... .+.++.. .+.....+ .........|...+...+...
T Consensus 394 ~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn-kp~~R~d~~d~vy~t~~eK~~al~~~I~~~ 470 (822)
T 3jux_A 394 SITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTH-KPMIRKDHDDLVFRTQKEKYEKIVEEIEKR 470 (822)
T ss_dssp CCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCS-SCCCCEECCCEEESSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCC-CCcceeecCcEEEecHHHHHHHHHHHHHHH
Confidence 0479999999988777776665433 3333322 22222222 234455556777777766543
Q ss_pred --CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCC--------C
Q 015759 216 --SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIP--------S 285 (401)
Q Consensus 216 --~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~--------~ 285 (401)
.+.++||||+|++.++.++..|.+.|+.+..+|++....++..+...++.| .|+|||+++++|+|++ +
T Consensus 471 ~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 471 YKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp HHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTT
T ss_pred hhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcC
Confidence 678999999999999999999999999999999997666666666677666 6999999999999998 6
Q ss_pred CCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccH-------HHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Q 015759 286 VDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYEL-------EWYLQIEKLIGKKLPEFPAEEEEVLLLLE 355 (401)
Q Consensus 286 ~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (401)
..+||+++.|.|...|.||+||+||.|.+|.++++++.+|. +.+..+.+.++..- ..|+...-+...++
T Consensus 549 glhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~-~~~i~~~~v~~~ie 624 (822)
T 3jux_A 549 GLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEE-GQPIQHPMLSKLIE 624 (822)
T ss_dssp SCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCS-SSCBCCHHHHHHHH
T ss_pred CCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCC-CceeccHHHHHHHH
Confidence 67999999999999999999999999999999999998773 34444555555432 23444444444333
No 55
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.7e-34 Score=276.58 Aligned_cols=297 Identities=16% Similarity=0.190 Sum_probs=202.6
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..|+++|++++||+|||++++. ++..+.... ...++||+||+ +|+.||.++++++... +++..++|+...
T Consensus 54 ~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~------~~~~~LIv~P~-~l~~qw~~e~~~~~~~--~~v~~~~g~~~~ 123 (500)
T 1z63_A 54 KLGFGICLADDMGLGKTLQTIA-VFSDAKKEN------ELTPSLVICPL-SVLKNWEEELSKFAPH--LRFAVFHEDRSK 123 (500)
T ss_dssp HTTCCEEECCCTTSCHHHHHHH-HHHHHHHTT------CCSSEEEEECS-TTHHHHHHHHHHHCTT--SCEEECSSSTTS
T ss_pred hCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcC------CCCCEEEEccH-HHHHHHHHHHHHHCCC--ceEEEEecCchh
Confidence 4688999999999999998654 444443322 44679999995 6899999999998753 566666665422
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchH-
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKK- 165 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~- 165 (401)
......+|+|+||+++.+... +....+++||+||||++.+... .....+..++. .+.+++||||..+
T Consensus 124 -----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~--~~~~~l~~l~~-~~~l~LTaTP~~n~ 191 (500)
T 1z63_A 124 -----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQT--KIFKAVKELKS-KYRIALTGTPIENK 191 (500)
T ss_dssp -----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTS--HHHHHHHTSCE-EEEEEECSSCSTTC
T ss_pred -----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhH--HHHHHHHhhcc-CcEEEEecCCCCCC
Confidence 112357899999999865332 2344689999999999876542 33344444543 5689999998432
Q ss_pred HHHH---HHHh--------------------------------cCCCeEEEecccc----cccccceEEEEEcC------
Q 015759 166 VKKL---QRAC--------------------------------LKNPVKIEAASKY----STVDTLKQQYRFVP------ 200 (401)
Q Consensus 166 ~~~~---~~~~--------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~------ 200 (401)
..++ .... +..+..+...... ............++
T Consensus 192 ~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~ 271 (500)
T 1z63_A 192 VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQA 271 (500)
T ss_dssp HHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHH
Confidence 1111 1100 0012222111100 00111111111111
Q ss_pred ---------------------------------------------------CCChhHHHHHHHHhc--CCCCEEEEecch
Q 015759 201 ---------------------------------------------------AKYKDCYLVYILTEV--SASSTMVFTRTC 227 (401)
Q Consensus 201 ---------------------------------------------------~~~~~~~l~~~l~~~--~~~~~ivf~~~~ 227 (401)
...|...+..++... .+.++||||++.
T Consensus 272 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~ 351 (500)
T 1z63_A 272 AMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFV 351 (500)
T ss_dssp HHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehH
Confidence 112333344444433 678999999999
Q ss_pred HHHHHHHHHHHhc-CCceEeecCCCCHHHHHHHHhhccCC-Cce-EEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHH
Q 015759 228 DATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAG-ECN-ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHR 304 (401)
Q Consensus 228 ~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~ 304 (401)
..++.+++.|... |..+..+||+++..+|.+++++|+++ ... +|++|+++++|+|++.+++||++|+||++..|.|+
T Consensus 352 ~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~ 431 (500)
T 1z63_A 352 DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQA 431 (500)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHH
Confidence 9999999999985 99999999999999999999999988 455 78999999999999999999999999999999999
Q ss_pred hhhcccCCCCceE--EEEecccc
Q 015759 305 VGRTARAGRTGVA--ISLVNQYE 325 (401)
Q Consensus 305 ~GR~~R~g~~g~~--i~~~~~~~ 325 (401)
+||++|.|+...+ +.++....
T Consensus 432 ~gR~~R~Gq~~~v~v~~lv~~~t 454 (500)
T 1z63_A 432 TDRVYRIGQTRNVIVHKLISVGT 454 (500)
T ss_dssp HHTTTTTTTTSCEEEEEEEETTS
T ss_pred HHHHHHcCCCCeeEEEEEEeCCC
Confidence 9999999976554 55565554
No 56
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-32 Score=273.87 Aligned_cols=316 Identities=18% Similarity=0.231 Sum_probs=216.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
...++++|++.+||+|||++++..+...+.... ....+||||| .+|+.||.+++.++.. ++.+..++|+..
T Consensus 252 ~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~------~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~ 322 (800)
T 3mwy_W 252 WSKGDNGILADEMGLGKTVQTVAFISWLIFARR------QNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQK 322 (800)
T ss_dssp HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS------CCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSH
T ss_pred hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC------CCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHH
Confidence 347899999999999999986654433332222 4556899999 6788999999999874 467777777765
Q ss_pred hHHHHHH------------hCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCc
Q 015759 86 MMQQTLA------------LGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMR 153 (401)
Q Consensus 86 ~~~~~~~------------~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~ 153 (401)
....... ....++|+|+|++++...... +....+++||+||||++.+... .....+..++ ..
T Consensus 323 ~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~s--~~~~~l~~l~-~~ 396 (800)
T 3mwy_W 323 SRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAES--SLYESLNSFK-VA 396 (800)
T ss_dssp HHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSSS--HHHHHHTTSE-EE
T ss_pred HHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCchh--HHHHHHHHhh-hc
Confidence 4432221 223578999999999764433 2233688999999999865332 3344444453 34
Q ss_pred eEEEEeecCc----hHHHHHHHHhcCC-----------------------------CeEEEecccccc--cccceEEEEE
Q 015759 154 QTYLFSATMT----KKVKKLQRACLKN-----------------------------PVKIEAASKYST--VDTLKQQYRF 198 (401)
Q Consensus 154 ~~i~~SAT~~----~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~~~~~~~~~ 198 (401)
..+++||||. .++..++...... |..+........ ..........
T Consensus 397 ~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~ 476 (800)
T 3mwy_W 397 NRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILR 476 (800)
T ss_dssp EEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEE
T ss_pred cEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEE
Confidence 5789999983 2222222222111 111111000000 0000011111
Q ss_pred cC---------------------------------------------------------------------------CCC
Q 015759 199 VP---------------------------------------------------------------------------AKY 203 (401)
Q Consensus 199 ~~---------------------------------------------------------------------------~~~ 203 (401)
++ ...
T Consensus 477 v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~ 556 (800)
T 3mwy_W 477 VELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSG 556 (800)
T ss_dssp ECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCH
T ss_pred eCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcCh
Confidence 11 122
Q ss_pred hhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCc---eEEEEcCCCC
Q 015759 204 KDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC---NILICTDVAS 278 (401)
Q Consensus 204 ~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vLv~T~~~~ 278 (401)
|...+..++... .+.++||||+....++.+.+.|...|+.+..++|+++..+|..++++|+++.. .+|++|.+++
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 344445555543 56899999999999999999999999999999999999999999999998654 4899999999
Q ss_pred CCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCc--eEEEEeccc--cHHHHHHHHHHh
Q 015759 279 RGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG--VAISLVNQY--ELEWYLQIEKLI 336 (401)
Q Consensus 279 ~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g--~~i~~~~~~--~~~~~~~~~~~~ 336 (401)
+|+|++.+++||+||+||++..+.|++||++|.|+.. .++.++... |...+....+..
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999754 455666665 344444444444
No 57
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-31 Score=259.61 Aligned_cols=309 Identities=17% Similarity=0.181 Sum_probs=205.4
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
.++.++|+..+||+|||++++..+...+...+. ......++|||||+ +|+.||.+++.++... .+.+..++++...
T Consensus 77 ~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~--~~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~~~~~~~~~g~~~ 152 (644)
T 1z3i_X 77 ENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD--CKPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKD 152 (644)
T ss_dssp TTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT--SSCSCSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHH
T ss_pred cCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc--ccCCCCcEEEEecH-HHHHHHHHHHHHHcCC-CeeEEEEeCCCHH
Confidence 467889999999999999876644433322211 11124569999996 7899999999998754 4566666666433
Q ss_pred HHHH--HH-hC-----CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEE
Q 015759 87 MQQT--LA-LG-----KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 87 ~~~~--~~-~~-----~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 158 (401)
.... .. .. ...+|+|+|++++...... +....+++||+||+|++.+... .....+ ..++. ...+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~vI~DEaH~ikn~~~-~~~~al-~~l~~-~~rl~L 226 (644)
T 1z3i_X 153 EIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV---LHKGKVGLVICDEGHRLKNSDN-QTYLAL-NSMNA-QRRVLI 226 (644)
T ss_dssp HHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT---TTTSCCCEEEETTGGGCCTTCH-HHHHHH-HHHCC-SEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH---hhcCCccEEEEECceecCChhh-HHHHHH-Hhccc-CcEEEE
Confidence 2111 11 11 1478999999999765432 3445789999999999866432 222233 33332 458999
Q ss_pred eecCchHH----HH---------------HHHHhc-----------------------------CCCeEEEeccccc--c
Q 015759 159 SATMTKKV----KK---------------LQRACL-----------------------------KNPVKIEAASKYS--T 188 (401)
Q Consensus 159 SAT~~~~~----~~---------------~~~~~~-----------------------------~~~~~~~~~~~~~--~ 188 (401)
||||..+- .. +...+. -.+..+....... .
T Consensus 227 TgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~ 306 (644)
T 1z3i_X 227 SGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY 306 (644)
T ss_dssp CSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT
T ss_pred ecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhh
Confidence 99984320 00 000000 0000000000000 0
Q ss_pred cccceEEEEEcC--------------------------------------------------------------------
Q 015759 189 VDTLKQQYRFVP-------------------------------------------------------------------- 200 (401)
Q Consensus 189 ~~~~~~~~~~~~-------------------------------------------------------------------- 200 (401)
..........++
T Consensus 307 LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~ 386 (644)
T 1z3i_X 307 LPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQ 386 (644)
T ss_dssp SCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCS
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccc
Confidence 000000000000
Q ss_pred ----------CCChhHHHHHHHHh---cCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCC
Q 015759 201 ----------AKYKDCYLVYILTE---VSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 267 (401)
Q Consensus 201 ----------~~~~~~~l~~~l~~---~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 267 (401)
...|...+..++.. ..+.++||||++...++.+...|...|+.+..+||+++..+|.+++++|+++.
T Consensus 387 ~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 387 NYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp SCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTT
T ss_pred cccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 01233334444433 35789999999999999999999999999999999999999999999999986
Q ss_pred c---eEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCc--eEEEEecccc
Q 015759 268 C---NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTG--VAISLVNQYE 325 (401)
Q Consensus 268 ~---~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g--~~i~~~~~~~ 325 (401)
. .+|++|.++++|+|++++++||+||+||++..+.|++||++|.|+.. .++.++....
T Consensus 467 ~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 467 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred CCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 5 38999999999999999999999999999999999999999999764 4555666553
No 58
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.8e-32 Score=276.55 Aligned_cols=295 Identities=15% Similarity=0.138 Sum_probs=195.1
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQ 88 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~ 88 (401)
+++++++++||||||+++ ++++..+.... ...++|||+|+++|+.|+.+.+..++... +.++.+...
T Consensus 300 ~~~gli~~~TGSGKT~t~-~~l~~ll~~~~------~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~------v~~~~s~~~ 366 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTS-FKAARLATELD------FIDKVFFVVDRKDLDYQTMKEYQRFSPDS------VNGSENTAG 366 (1038)
T ss_dssp GGSEEEEECTTSSHHHHH-HHHHHHHTTCT------TCCEEEEEECGGGCCHHHHHHHHTTSTTC------SSSSCCCHH
T ss_pred CCCEEEEecCCCCHHHHH-HHHHHHHHhcC------CCceEEEEeCcHHHHHHHHHHHHHhcccc------cccccCHHH
Confidence 578999999999999997 55554332211 34689999999999999999999886431 123333333
Q ss_pred HHHHh-CCCCCEEEECchHHHHHHhcCCCC-CCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCchHH
Q 015759 89 QTLAL-GKRPHIVVATPGRLMDHLTNTKGF-SLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMTKKV 166 (401)
Q Consensus 89 ~~~~~-~~~~~Iii~T~~~l~~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 166 (401)
....+ ....+|+|+||++|...+.....+ .+....+||+||||++.. +.....+...+++ .++++|||||....
T Consensus 367 l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p~-a~~lgfTATP~~~~ 442 (1038)
T 2w00_A 367 LKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKKFKR-YYQFGFTGTPIFPE 442 (1038)
T ss_dssp HHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHHCSS-EEEEEEESSCCCST
T ss_pred HHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHHhCCc-ccEEEEeCCccccc
Confidence 33333 346899999999999877643211 355788999999998753 3345667777765 67999999997431
Q ss_pred --------HH-------------HHHHhcCCCeEEEeccccccccc------------ceEEEEEcCCCChhHH-HHHHH
Q 015759 167 --------KK-------------LQRACLKNPVKIEAASKYSTVDT------------LKQQYRFVPAKYKDCY-LVYIL 212 (401)
Q Consensus 167 --------~~-------------~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-l~~~l 212 (401)
.. ........|..+........... ..... ......+... +..++
T Consensus 443 ~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~-~l~~~~ri~~I~~~Il 521 (1038)
T 2w00_A 443 NALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQ-AFLHPMRIQEITQYIL 521 (1038)
T ss_dssp TCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTT-TTTCHHHHHHHHHHHH
T ss_pred cchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHH-HhcCHHHHHHHHHHHH
Confidence 11 11111112222211110000000 00000 0000111112 22233
Q ss_pred Hhc-----------CCCCEEEEecchHHHHHHHHHHHhcC------------Cce-EeecCC----------C-------
Q 015759 213 TEV-----------SASSTMVFTRTCDATRLLALMLRNLG------------QRA-IPISGH----------M------- 251 (401)
Q Consensus 213 ~~~-----------~~~~~ivf~~~~~~~~~l~~~l~~~~------------~~~-~~~~~~----------~------- 251 (401)
.+. .+.++||||+++..|..+++.|.+.+ ..+ .++|++ +
T Consensus 522 ~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~ 601 (1038)
T 2w00_A 522 NNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDT 601 (1038)
T ss_dssp HHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCG
T ss_pred HHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccc
Confidence 321 34579999999999999999998764 444 445542 2
Q ss_pred ---CH-----------------------------HHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChh
Q 015759 252 ---SQ-----------------------------SKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSK 299 (401)
Q Consensus 252 ---~~-----------------------------~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~ 299 (401)
+. ..|..++++|++|+.+|||+|+++.+|+|+|.+ .++++|.|.+..
T Consensus 602 ~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~ 680 (1038)
T 2w00_A 602 SAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYH 680 (1038)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCcc
Confidence 21 137888999999999999999999999999999 667899999999
Q ss_pred HHHHHhhhcccCCCC----ceEEEEec
Q 015759 300 DYIHRVGRTARAGRT----GVAISLVN 322 (401)
Q Consensus 300 ~~~Q~~GR~~R~g~~----g~~i~~~~ 322 (401)
.|+|++||++|.+.. |.++.++.
T Consensus 681 ~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 681 GLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred ceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999998753 66776664
No 59
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=9.8e-31 Score=227.72 Aligned_cols=174 Identities=70% Similarity=1.048 Sum_probs=156.5
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+++++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.+++++...++.+..+.|
T Consensus 74 i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~------~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g 147 (249)
T 3ber_A 74 IPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG 147 (249)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC------CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT
T ss_pred HHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC------CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEEC
Confidence 567889999999999999999999999998887543 46679999999999999999999998777889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.....+...+..+++|+|+||+++.+.+.....+.+..+++||+||||++.+.+|...+..++..+++..|++++|||+
T Consensus 148 ~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 148 GIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp TSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 98887777776778999999999999988875556788999999999999999999999999999999889999999999
Q ss_pred chHHHHHHHHhcCCCeEEEe
Q 015759 163 TKKVKKLQRACLKNPVKIEA 182 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~ 182 (401)
++.+..+...++.+|..+.+
T Consensus 228 ~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 228 TKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp CHHHHHHHHHHCSSCEEEEC
T ss_pred CHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999988754
No 60
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=6.1e-31 Score=228.54 Aligned_cols=180 Identities=36% Similarity=0.478 Sum_probs=158.8
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++++|||+|||++|++|++..+...... ....+.++||++||++|+.|+.+.++++....++.+..++|
T Consensus 60 i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g 138 (242)
T 3fe2_A 60 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFL-ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG 138 (242)
T ss_dssp HHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCC-CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcccc-ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEEC
Confidence 56788999999999999999999999999988643211 11256789999999999999999999998777899999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+..+++|+|+||+++.+.+.... ..+.+++++|+||+|++.+.+|...+..++..+++..|++++|||+
T Consensus 139 ~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 139 GAPKGPQIRDLERGVEICIATPGRLIDFLECGK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp TSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS-CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 998887777777789999999999999887654 4688999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecc
Q 015759 163 TKKVKKLQRACLKNPVKIEAAS 184 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
++.+..+...++.+|..+....
T Consensus 218 ~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 218 PKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp CHHHHHHHHHHCSSCEEEEECC
T ss_pred CHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999998887654
No 61
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=224.29 Aligned_cols=177 Identities=33% Similarity=0.437 Sum_probs=145.8
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++.+|||+|||++|++|++..+...........+.++||++||++|+.|+.+.++++. ..++.+..++|
T Consensus 51 i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~ 129 (228)
T 3iuy_A 51 WPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYG 129 (228)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEEC
Confidence 56788999999999999999999999999887654332223367789999999999999999999986 34788889999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+..+++|+|+||+++.+.+.... ..+.++++||+||||++.+.+|...+..++..+++..|++++|||+
T Consensus 130 ~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 130 GRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS-VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp ------CHHHHHSCCSEEEECHHHHHHHHHTTC-CCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred CCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-cCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 888776666666789999999999999877654 5688999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEE
Q 015759 163 TKKVKKLQRACLKNPVKIE 181 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (401)
++.+..+...++.+|..+.
T Consensus 209 ~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 209 PDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CHHHHHHHHTTCSSCEEEE
T ss_pred CHHHHHHHHHHCCCCEEEe
Confidence 9999999999999887764
No 62
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=6.5e-30 Score=223.72 Aligned_cols=192 Identities=40% Similarity=0.537 Sum_probs=155.0
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhc---CCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQ---RTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCA 78 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~---~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~ 78 (401)
.++.+++|+|+++++|||+|||++|++|++..+....... ....+.++||++|+++|+.|+.+.+++++...++.+.
T Consensus 53 ~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 132 (253)
T 1wrb_A 53 AIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSC 132 (253)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEE
Confidence 3567889999999999999999999999998887532110 0113468999999999999999999999887788999
Q ss_pred EEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHh--CCC--Cce
Q 015759 79 VLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNV--IPR--MRQ 154 (401)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~--~~~--~~~ 154 (401)
.++|+.........+..+++|+|+||+++.+.+.... +.+..+++||+||||++.+.+|...+..++.. ++. ..|
T Consensus 133 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q 211 (253)
T 1wrb_A 133 VVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK-ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQ 211 (253)
T ss_dssp EECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS-BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCE
T ss_pred EEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC-CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcE
Confidence 9999988877777777789999999999999887754 56788999999999999999999999999985 443 678
Q ss_pred EEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceE
Q 015759 155 TYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQ 194 (401)
Q Consensus 155 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (401)
++++|||+++.+..+...++.+|..+..........++.|
T Consensus 212 ~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 212 TLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999999999998887766554444444
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=226.73 Aligned_cols=174 Identities=40% Similarity=0.591 Sum_probs=153.0
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.++.|+|++++||||+|||++|++|++..+...... ...+.++||++||++|+.|+++.+++++...++.+..+.|
T Consensus 85 i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g 162 (262)
T 3ly5_A 85 IRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM--PRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMG 162 (262)
T ss_dssp HHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECS
T ss_pred HHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc--ccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEEC
Confidence 56778899999999999999999999999988753211 1146679999999999999999999998888889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+..+++|+|+||+++.+++.....+.+.++++||+||+|++.+.+|...+..++..+++.+|++++|||+
T Consensus 163 ~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 163 GSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 242 (262)
T ss_dssp SSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSC
T ss_pred CCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecC
Confidence 98887777666667999999999999988876656788999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCe
Q 015759 163 TKKVKKLQRACLKNPV 178 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~ 178 (401)
++.+..+....+.++.
T Consensus 243 ~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 243 TRKVEDLARISLKKEP 258 (262)
T ss_dssp CHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHcCCCC
Confidence 9999999998877554
No 64
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=8.3e-30 Score=216.05 Aligned_cols=171 Identities=32% Similarity=0.580 Sum_probs=151.4
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~~ 81 (401)
++.+++|+|+++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.+.++.... ++.+..++
T Consensus 34 i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 107 (206)
T 1vec_A 34 IPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK------DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATT 107 (206)
T ss_dssp HHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS------CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEEC
T ss_pred HHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC------CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEe
Confidence 567889999999999999999999999998765432 56689999999999999999999988766 78899999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
|+.........+..+++|+|+||+++.+.+.... ..+.+++++|+||+|++.+.++...+..++..+++..|++++|||
T Consensus 108 g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 108 GGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV-AKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC-SCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC-cCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 9988877777777789999999999998887644 467889999999999999999999999999999988999999999
Q ss_pred CchHHHHHHHHhcCCCeEE
Q 015759 162 MTKKVKKLQRACLKNPVKI 180 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~ 180 (401)
+++.+..+...++.+|..+
T Consensus 187 ~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 187 FPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp CCHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHHcCCCeEe
Confidence 9999999999999888754
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.1e-29 Score=219.88 Aligned_cols=178 Identities=39% Similarity=0.626 Sum_probs=152.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++++|||+|||++|++|++..+...... ...+.++||++|+++|+.|+.+.+++++...++.+..++|
T Consensus 56 i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 133 (236)
T 2pl3_A 56 IGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT--STDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIG 133 (236)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC--GGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECC
T ss_pred HHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc--ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEEC
Confidence 56788999999999999999999999999888653211 1146789999999999999999999998877889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+ .+++|+|+||+++.+.+.....+.+.++++||+||+|++.+.++...+..++..+++..|++++|||+
T Consensus 134 ~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 134 GKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp C--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSC
T ss_pred CCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeC
Confidence 88766555555 46899999999999988775545678899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhcCCCeEEEec
Q 015759 163 TKKVKKLQRACLKNPVKIEAA 183 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~ 183 (401)
++.+..+...++.+|..+.+.
T Consensus 213 ~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 213 TKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp CHHHHHHHHHSCSSCEEEECC
T ss_pred CHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999887654
No 66
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=4.8e-30 Score=229.12 Aligned_cols=172 Identities=31% Similarity=0.403 Sum_probs=149.1
Q ss_pred cccccCC--ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEE
Q 015759 3 LWFCDAG--KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAV 79 (401)
Q Consensus 3 l~~~~~g--~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~ 79 (401)
+|.++.| +|++++||||||||++|++|++..+.... .++++||++||++|+.|+++.++.++... ++.+..
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~ 196 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAY 196 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC------CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 5677776 99999999999999999999999876433 56689999999999999999999987654 678888
Q ss_pred EEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEE
Q 015759 80 LVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~ 158 (401)
..|+....... ...++|+|+||++|.+++.....+.+.++++||+||+|++.+ .++...+..+...+++.+|+++|
T Consensus 197 ~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 197 AVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp ESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred EeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 88876543222 346899999999999999776666788999999999999987 78999999999999999999999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEec
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAA 183 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
|||+++.+..+...++.+|..+...
T Consensus 274 SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999999999999999888754
No 67
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=4.5e-30 Score=219.68 Aligned_cols=175 Identities=32% Similarity=0.491 Sum_probs=151.1
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC----CceEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI----SLRCA 78 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~----~i~~~ 78 (401)
++.+++|+|+++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.++++.... ++.+.
T Consensus 35 i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 108 (219)
T 1q0u_A 35 IPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER------AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVAR 108 (219)
T ss_dssp HHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEE
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc------CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEE
Confidence 567788999999999999999999999998875432 46789999999999999999999987665 67888
Q ss_pred EEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEE
Q 015759 79 VLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 158 (401)
.+.|+.........+..+++|+|+||+++.+.+.... +.+..++++|+||+|++.+.++...+..++..+++..|++++
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~ 187 (219)
T 1q0u_A 109 CLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA-LDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVF 187 (219)
T ss_dssp EECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC-CCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEE
T ss_pred EEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC-CCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEE
Confidence 8888877665555555678999999999999887644 567889999999999999999999999999999988999999
Q ss_pred eecCchHHHHHHHHhcCCCeEEEecc
Q 015759 159 SATMTKKVKKLQRACLKNPVKIEAAS 184 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
|||+++++.++...++.+|..+....
T Consensus 188 SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 188 SATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp ESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred ecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999998876543
No 68
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.97 E-value=3.3e-29 Score=203.53 Aligned_cols=157 Identities=36% Similarity=0.578 Sum_probs=149.0
Q ss_pred ccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCC
Q 015759 188 TVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGE 267 (401)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 267 (401)
...++.+.+..++...|...+..++....++++||||+++..++.+++.|.+.|+.+..+||+|+..+|..+++.|++|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 44568899999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCC
Q 015759 268 CNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFP 344 (401)
Q Consensus 268 ~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (401)
.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++.+.+...+..+++.++.++++.+
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876543
No 69
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=8e-30 Score=220.65 Aligned_cols=174 Identities=38% Similarity=0.557 Sum_probs=142.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.+++++...++.+..+.|
T Consensus 61 i~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 134 (237)
T 3bor_A 61 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF------KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG 134 (237)
T ss_dssp HHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC
T ss_pred HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC------CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEEC
Confidence 567889999999999999999999999998775432 46689999999999999999999998777888888888
Q ss_pred CCChHHHHHHhCCC-CCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 83 GVDMMQQTLALGKR-PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 83 ~~~~~~~~~~~~~~-~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
+.........+..+ ++|+|+||+++.+.+.... +.+..+++||+||||++.+.++...+..++..+++..|++++|||
T Consensus 135 ~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~-~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY-LSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp -------------CCCSEEEECHHHHHHHHHTTS-SCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC-cCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 87766555555444 8999999999999887643 467889999999999999989999999999999988999999999
Q ss_pred CchHHHHHHHHhcCCCeEEEec
Q 015759 162 MTKKVKKLQRACLKNPVKIEAA 183 (401)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
+++.+..+...++.+|..+.+.
T Consensus 214 ~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 214 MPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCHHHHHHHHHHCSSCEEEC--
T ss_pred cCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999988877543
No 70
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=1.5e-29 Score=217.92 Aligned_cols=172 Identities=30% Similarity=0.504 Sum_probs=148.9
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~~ 81 (401)
++.+++|+|+++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.+++++... ++++..++
T Consensus 55 i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 128 (230)
T 2oxc_A 55 IPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN------LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFI 128 (230)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS------CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEEC
T ss_pred HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC------CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEe
Confidence 567889999999999999999999999998875432 56789999999999999999999987654 78899999
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc-cHHHHHHHHHhCCCCceEEEEee
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD-FEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
|+.........+. +++|+|+||+++.+.+.... +.+.+++++|+||+|++.+.+ |...+..++..+++..|++++||
T Consensus 129 g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSA 206 (230)
T 2oxc_A 129 GGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDY-LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSA 206 (230)
T ss_dssp TTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTS-SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEES
T ss_pred CCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCC-cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEe
Confidence 9888766655554 69999999999999877643 567889999999999998886 99999999999998899999999
Q ss_pred cCchHHHHHHHHhcCCCeEEEe
Q 015759 161 TMTKKVKKLQRACLKNPVKIEA 182 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~~~~~~~ 182 (401)
|+++.+..+...++.+|..+..
T Consensus 207 T~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 207 TYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCCHHHHHHHTTTCSSCEEECC
T ss_pred ccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999988888877643
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.5e-29 Score=217.26 Aligned_cols=174 Identities=33% Similarity=0.564 Sum_probs=144.3
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.+.++....++.+..++|
T Consensus 45 i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 118 (224)
T 1qde_A 45 IMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV------KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG 118 (224)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC------CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC
T ss_pred HHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC------CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeC
Confidence 567889999999999999999999999998875432 56789999999999999999999998877889999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+.. ++|+|+||+++.+.+.... ..+.++++||+||||++.+.++...+..++..+++..|++++|||+
T Consensus 119 ~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 119 GTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR-FRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp ----------CTT-CSEEEECHHHHHHHHHTTS-SCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred CcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC-cchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 8776655555544 8999999999998887654 5678899999999999999999999999999999899999999999
Q ss_pred chHHHHHHHHhcCCCeEEEecc
Q 015759 163 TKKVKKLQRACLKNPVKIEAAS 184 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
++.+..+...++.+|..+....
T Consensus 197 ~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 197 PNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp CHHHHHHHHHHCSSCEEEC---
T ss_pred CHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999998876543
No 72
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=6.7e-29 Score=203.28 Aligned_cols=158 Identities=29% Similarity=0.481 Sum_probs=147.1
Q ss_pred cccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCc
Q 015759 189 VDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGEC 268 (401)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 268 (401)
...+.+.+..++...|...+..++......++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|++|+.
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 35678899999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccc-cHHHHHHHHHHhCCCCCCCCCC
Q 015759 269 NILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 269 ~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++.+. +...+..+++.++..++++|..
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 99999999999999999999999999999999999999999999999999999875 5688899999999998888765
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=4.7e-29 Score=211.57 Aligned_cols=174 Identities=43% Similarity=0.579 Sum_probs=149.6
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+.+|+++++.+|||+|||++|++|++..+..... ...+.++||++|+++|+.|+.+.++++... +++..++|
T Consensus 32 i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~ 106 (207)
T 2gxq_A 32 LPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE---RGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYG 106 (207)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC---TTCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECS
T ss_pred HHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEEC
Confidence 5678899999999999999999999999988753211 115678999999999999999999998754 67888888
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.........+..+++|+|+||+++.+.+.... +.+.+++++|+||+|++.+.++...+..++..+++..|++++|||+
T Consensus 107 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 107 GTGYGKQKEALLRGADAVVATPGRALDYLRQGV-LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp SSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS-SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred CCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC-cchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 887766666555679999999999999887643 5688899999999999999999999999999999889999999999
Q ss_pred chHHHHHHHHhcCCCeEEEe
Q 015759 163 TKKVKKLQRACLKNPVKIEA 182 (401)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~ 182 (401)
++.+..+...++.+|..+..
T Consensus 186 ~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 186 PSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp CHHHHHHHHHHCSSCEEEEC
T ss_pred CHHHHHHHHHHcCCCeEEEc
Confidence 99999999999999887754
No 74
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.1e-29 Score=204.51 Aligned_cols=160 Identities=26% Similarity=0.550 Sum_probs=146.0
Q ss_pred ccccceEEEEEcCCCC-hhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCC
Q 015759 188 TVDTLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAG 266 (401)
Q Consensus 188 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 266 (401)
...++.+.+..++... |...+..++.....+++||||+++..++.+++.|...|+.+..+||+++..+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 3467889999998765 888899999888889999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCCCCCCCCCCEEEEecCC------CChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCC
Q 015759 267 ECNILICTDVASRGLDIPSVDMVINYDIP------TNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKL 340 (401)
Q Consensus 267 ~~~vLv~T~~~~~Gid~~~~~~vi~~~~p------~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 340 (401)
+.+|||||+++++|+|+|++++||+||.| .+..+|+||+||+||.|+.|.+++++.+.+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999988
Q ss_pred CCCCCCH
Q 015759 341 PEFPAEE 347 (401)
Q Consensus 341 ~~~~~~~ 347 (401)
++++...
T Consensus 164 ~~~~~~~ 170 (175)
T 2rb4_A 164 KQLNAED 170 (175)
T ss_dssp EEECSSC
T ss_pred cccCCch
Confidence 8776653
No 75
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=1e-28 Score=201.19 Aligned_cols=157 Identities=33% Similarity=0.543 Sum_probs=143.5
Q ss_pred cceEEEEEcCCCC-hhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCce
Q 015759 191 TLKQQYRFVPAKY-KDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 269 (401)
Q Consensus 191 ~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 269 (401)
++.+.+..++.+. |...+..++....++++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 5678888888776 999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCCCH
Q 015759 270 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEE 347 (401)
Q Consensus 270 vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (401)
|||||+++++|+|+|++++||++|+|+++.+|.||+||+||.|+.|.+++++.+.+...+..+++.++..+++++.+.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888887653
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1e-26 Score=225.04 Aligned_cols=119 Identities=24% Similarity=0.267 Sum_probs=100.2
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
+|.++.|+ |..++||+|||++|.+|++...+ .+..++|++||++||.|.++++..+...+++++..+.|
T Consensus 88 ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL---------~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~G 156 (997)
T 2ipc_A 88 GAVLHEGK--IAEMKTGEGKTLVATLAVALNAL---------TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQH 156 (997)
T ss_dssp HHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT---------TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCT
T ss_pred cccccCCc--eeeccCCCchHHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 56778888 99999999999999999976554 45579999999999999999999999999999999999
Q ss_pred CCChHHHHHHhCCCCCEEEECchHH-HHHHhcCC-----CCCCC---CccEEEEcchhhcc
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRL-MDHLTNTK-----GFSLG---TLKYLVLDEADRLL 134 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l-~~~~~~~~-----~~~~~---~~~~iIiDE~h~~~ 134 (401)
+.+........ .++|+|+||+.| .+++...- .+.+. .+.++|+||+|.++
T Consensus 157 g~~~~~r~~ay--~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 157 ASTPAERRKAY--LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TCCHHHHHHHH--TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CCCHHHHHHHc--CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 98865444433 589999999999 78887642 23566 89999999999876
No 77
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=9.4e-28 Score=203.28 Aligned_cols=158 Identities=35% Similarity=0.531 Sum_probs=146.9
Q ss_pred cceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceE
Q 015759 191 TLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 270 (401)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 270 (401)
.+.+.+..++...|...+..++....++++||||+++..++.+++.|...++.+..+||+++..+|..+++.|++|+.+|
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 34566777888999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCCCHH
Q 015759 271 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAEEE 348 (401)
Q Consensus 271 Lv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (401)
||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++++.+...+..+++.++..+..++.+..
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 162 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTP 162 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887776543
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=204.10 Aligned_cols=172 Identities=27% Similarity=0.467 Sum_probs=138.9
Q ss_pred HhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCC
Q 015759 172 ACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 251 (401)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 251 (401)
.++.+|..+.+.........+.+.+..++...|...+..++... +.++||||+++..++.+++.|...++.+..+||++
T Consensus 10 ~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~ 88 (191)
T 2p6n_A 10 GVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGK 88 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTS
T ss_pred cccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34566777777666666778999999999999999998888764 46899999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccc-cHHHHH
Q 015759 252 SQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQY-ELEWYL 330 (401)
Q Consensus 252 ~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~-~~~~~~ 330 (401)
++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.+++++++. +...+.
T Consensus 89 ~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 168 (191)
T 2p6n_A 89 DQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLM 168 (191)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 777888
Q ss_pred HHHHHhCCCCCCCC
Q 015759 331 QIEKLIGKKLPEFP 344 (401)
Q Consensus 331 ~~~~~~~~~~~~~~ 344 (401)
.+++.+......+|
T Consensus 169 ~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 169 DLKALLLEAKQKVP 182 (191)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHccCcCC
Confidence 88887765555444
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=1.3e-28 Score=210.91 Aligned_cols=172 Identities=33% Similarity=0.567 Sum_probs=146.4
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCC-CceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGI-SLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~-~i~~~~~~ 81 (401)
++.+++|+|+++++|||+|||++|++|++..+.... .+.++||++|+++|+.|+++.++++.... ++++..++
T Consensus 45 i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~ 118 (220)
T 1t6n_A 45 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT------GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFF 118 (220)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT------TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEES
T ss_pred HHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC------CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEe
Confidence 567788999999999999999999999988764321 35589999999999999999999987665 78999999
Q ss_pred cCCChHHHHHHhC-CCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEe
Q 015759 82 GGVDMMQQTLALG-KRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 82 ~~~~~~~~~~~~~-~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
|+.........+. ..++|+|+||+++.+.+.... +.+.+++++|+||+|++.+ .++...+..++..+++..|++++|
T Consensus 119 g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~S 197 (220)
T 1t6n_A 119 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS-LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 197 (220)
T ss_dssp CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS-SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC-CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEE
Confidence 9887665555443 357999999999999887644 5688999999999999987 578888999999998889999999
Q ss_pred ecCchHHHHHHHHhcCCCeEEE
Q 015759 160 ATMTKKVKKLQRACLKNPVKIE 181 (401)
Q Consensus 160 AT~~~~~~~~~~~~~~~~~~~~ 181 (401)
||+++.+..+...++.+|..+.
T Consensus 198 AT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 198 ATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SCCCTTTHHHHHTTCSSCEEEE
T ss_pred eecCHHHHHHHHHHcCCCeEEe
Confidence 9999999999999999887664
No 80
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=214.06 Aligned_cols=178 Identities=31% Similarity=0.463 Sum_probs=144.9
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG 82 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~ 82 (401)
++.+++|+|+++.+|||+|||++|++|++..+.... ..+.++||++|+++|+.|+++.++++....++.+..++|
T Consensus 60 i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~ 134 (245)
T 3dkp_A 60 IPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHK 134 (245)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCH
T ss_pred HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEec
Confidence 567889999999999999999999999998875321 156689999999999999999999998877888877776
Q ss_pred CCChHHHH-HHhCCCCCEEEECchHHHHHHhcCC-CCCCCCccEEEEcchhhccc---cccHHHHHHHHHhC-CCCceEE
Q 015759 83 GVDMMQQT-LALGKRPHIVVATPGRLMDHLTNTK-GFSLGTLKYLVLDEADRLLN---DDFEKSLDEILNVI-PRMRQTY 156 (401)
Q Consensus 83 ~~~~~~~~-~~~~~~~~Iii~T~~~l~~~~~~~~-~~~~~~~~~iIiDE~h~~~~---~~~~~~~~~i~~~~-~~~~~~i 156 (401)
+....... .....+++|+|+||+++.+.+.... .+.+.++++||+||+|++.+ .++...+..++..+ ++..|++
T Consensus 135 ~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 214 (245)
T 3dkp_A 135 AAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRA 214 (245)
T ss_dssp HHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEE
T ss_pred CccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEE
Confidence 54332221 1223468999999999999887754 35688999999999999987 46788888887665 4567999
Q ss_pred EEeecCchHHHHHHHHhcCCCeEEEeccc
Q 015759 157 LFSATMTKKVKKLQRACLKNPVKIEAASK 185 (401)
Q Consensus 157 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
+||||+++++..+...++.+|..+.....
T Consensus 215 ~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 215 MFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999999999999999998877654
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=201.38 Aligned_cols=159 Identities=35% Similarity=0.556 Sum_probs=133.7
Q ss_pred cccccceEEEEEcCCCChhHHHHHHHHhc-CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccC
Q 015759 187 STVDTLKQQYRFVPAKYKDCYLVYILTEV-SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKA 265 (401)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 265 (401)
....++.+.+..++...|...+..++... .+.++||||+++..++.+++.|...|+.+..+||+++..+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 44567899999999999999999988876 57899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCC
Q 015759 266 GECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPA 345 (401)
Q Consensus 266 ~~~~vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (401)
|+.+|||||+++++|+|+|++++||++|+|+++.+|+||+||+||.|+.|.+++++.+.+...+..+++.++.....+|.
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988766665553
No 82
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.9e-26 Score=225.23 Aligned_cols=172 Identities=21% Similarity=0.213 Sum_probs=129.5
Q ss_pred CceEEEEeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHHh--cCCCCEEEEecchHH
Q 015759 152 MRQTYLFSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILTE--VSASSTMVFTRTCDA 229 (401)
Q Consensus 152 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~ivf~~~~~~ 229 (401)
..|++++|||++...... .. ..+............ .+...+...+...+...+.. ..+.++||||+++..
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~--~~~~~~~r~~~l~~p--~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ 451 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SG--RVVEQIIRPTGLLDP--LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVRM 451 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CS--EEEEECSCTTCCCCC--EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred cCCEEEEecCCCHHHHHh----hh--CeeeeeeccCCCCCC--eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 468999999998653221 11 111111111001111 12222333334444333332 267899999999999
Q ss_pred HHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecC-----CCChhHHHHH
Q 015759 230 TRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI-----PTNSKDYIHR 304 (401)
Q Consensus 230 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~-----p~s~~~~~Q~ 304 (401)
++.+++.|.+.|+.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.|..+|+||
T Consensus 452 ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr 531 (664)
T 1c4o_A 452 AEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQT 531 (664)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHH
T ss_pred HHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred hhhcccCCCCceEEEEeccccHHHHHHH
Q 015759 305 VGRTARAGRTGVAISLVNQYELEWYLQI 332 (401)
Q Consensus 305 ~GR~~R~g~~g~~i~~~~~~~~~~~~~~ 332 (401)
+||+||.+ .|.+++++++.+......+
T Consensus 532 ~GRagR~~-~G~~i~~~~~~~~~~~~~i 558 (664)
T 1c4o_A 532 IGRAARNA-RGEVWLYADRVSEAMQRAI 558 (664)
T ss_dssp HGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred HCccCcCC-CCEEEEEEcCCCHHHHHHH
Confidence 99999985 8999999988765443333
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=9.1e-27 Score=206.17 Aligned_cols=156 Identities=36% Similarity=0.539 Sum_probs=143.8
Q ss_pred cceEEEEEcCCCChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceE
Q 015759 191 TLKQQYRFVPAKYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 270 (401)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 270 (401)
.+.+.+..++...|...+..++....++++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+|
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 35678888999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCCC
Q 015759 271 LICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 271 Lv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
||||+++++|+|+|++++||+||.|++...|+||+||+||.|+.|.+++++++.+...+..+++.++..+..++.+
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888777654
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.89 E-value=1.7e-28 Score=200.80 Aligned_cols=156 Identities=36% Similarity=0.566 Sum_probs=143.2
Q ss_pred cceEEEEEcCC-CChhHHHHHHHHhcCCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCce
Q 015759 191 TLKQQYRFVPA-KYKDCYLVYILTEVSASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECN 269 (401)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 269 (401)
++.+.+..++. ..|...+..++....++++||||+++..++.+++.|+..++.+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 45566777777 77888888888887888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCCC
Q 015759 270 ILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAE 346 (401)
Q Consensus 270 vLv~T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (401)
|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+.|.+++++.+.+...+..+++.++..++..+.+
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVID 159 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777655543
No 85
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=5.5e-24 Score=208.97 Aligned_cols=212 Identities=18% Similarity=0.217 Sum_probs=150.9
Q ss_pred ECchHHHHHHhcCCCCCCCCccEEEEcchhhcccc--ccHH----HHHHHHH------------------hCCCCceEEE
Q 015759 102 ATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLND--DFEK----SLDEILN------------------VIPRMRQTYL 157 (401)
Q Consensus 102 ~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~--~~~~----~~~~i~~------------------~~~~~~~~i~ 157 (401)
+||++|++++.. -.+||+||+|++.+. .+.. ....... ..+...|+++
T Consensus 320 ~tpg~LlDyl~~--------~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~ 391 (661)
T 2d7d_A 320 STPYTLLDYFPD--------DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVY 391 (661)
T ss_dssp CCCBCGGGGSCS--------SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEE
T ss_pred CCccHHHHHccc--------CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEE
Confidence 788888876533 238999999987531 1111 1111111 1113568999
Q ss_pred EeecCchHHHHHHHHhcCCCeEEEecccccccccceEEEEEcCCCChhHHHHHHHH-hc-CCCCEEEEecchHHHHHHHH
Q 015759 158 FSATMTKKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVYILT-EV-SASSTMVFTRTCDATRLLAL 235 (401)
Q Consensus 158 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~~~~ivf~~~~~~~~~l~~ 235 (401)
+|||++...... .............. ... .+...+...+...+...+. .. .+.++||||+++..++.+++
T Consensus 392 ~SAT~~~~~~~~----~~~~~~~~~r~~~l--~~p--~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 392 VSATPGPYEIEH----TDEMVEQIIRPTGL--LDP--LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp ECSSCCHHHHHH----CSSCEEECCCTTCC--CCC--EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred EecCCChhHHHh----hhCeeeeeecccCC--CCC--eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 999997653221 11111111111100 011 1222223333333333333 32 57799999999999999999
Q ss_pred HHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCCCCCCCCCCCEEEEecC-----CCChhHHHHHhhhccc
Q 015759 236 MLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDI-----PTNSKDYIHRVGRTAR 310 (401)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~~Gid~~~~~~vi~~~~-----p~s~~~~~Q~~GR~~R 310 (401)
.|.+.|+.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+||+||+||
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR 543 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTT
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CCCCceEEEEeccccHHHHH
Q 015759 311 AGRTGVAISLVNQYELEWYL 330 (401)
Q Consensus 311 ~g~~g~~i~~~~~~~~~~~~ 330 (401)
. ..|.+++++++.+.....
T Consensus 544 ~-~~G~~i~~~~~~~~~~~~ 562 (661)
T 2d7d_A 544 N-AEGRVIMYADKITKSMEI 562 (661)
T ss_dssp S-TTCEEEEECSSCCHHHHH
T ss_pred C-CCCEEEEEEeCCCHHHHH
Confidence 8 689999999887654433
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=7.5e-24 Score=204.14 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=67.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEE--EcCCCCCCCCCCC----CCEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILI--CTDVASRGLDIPS----VDMV 289 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv--~T~~~~~Gid~~~----~~~v 289 (401)
.+++++||++|...++.+++.++. .. ...++.. .+|.++++.|+++. .||+ +|+.+++|||+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 567899999999999999988865 23 3444443 46788999998864 5666 8899999999998 7899
Q ss_pred EEecCCCChh------------------------------HHHHHhhhcccCCCCceEEEEeccc
Q 015759 290 INYDIPTNSK------------------------------DYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 290 i~~~~p~s~~------------------------------~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
|+++.|.... .+.|.+||+.|...+--++++++..
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 9999985322 2459999999987665556666654
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.89 E-value=4.3e-21 Score=185.61 Aligned_cols=299 Identities=14% Similarity=0.056 Sum_probs=188.8
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
.++..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....++++..+.|.
T Consensus 17 ~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr 84 (551)
T 3crv_A 17 EGLRNNFLVALNAPTGSGKTLFSLLVSLE------------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGK 84 (551)
T ss_dssp HHHHTTCEEEEECCTTSSHHHHHHHHHHH------------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCH
T ss_pred HHHHcCCcEEEECCCCccHHHHHHHHHHh------------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccc
Confidence 46678999999999999999999999987 245799999999999999999998876667888887764
Q ss_pred CCh---------------------------------HHH------------------HHHhCCCCCEEEECchHHHHHHh
Q 015759 84 VDM---------------------------------MQQ------------------TLALGKRPHIVVATPGRLMDHLT 112 (401)
Q Consensus 84 ~~~---------------------------------~~~------------------~~~~~~~~~Iii~T~~~l~~~~~ 112 (401)
.+. ... .......++|||+||..|++...
T Consensus 85 ~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~ 164 (551)
T 3crv_A 85 PSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRY 164 (551)
T ss_dssp HHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHH
T ss_pred cccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHH
Confidence 321 000 01223468999999999988765
Q ss_pred cCCCCCCCCccEEEEcchhhccccc-------------------------------------------------------
Q 015759 113 NTKGFSLGTLKYLVLDEADRLLNDD------------------------------------------------------- 137 (401)
Q Consensus 113 ~~~~~~~~~~~~iIiDE~h~~~~~~------------------------------------------------------- 137 (401)
...........++||||||++.+ .
T Consensus 165 ~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~ 243 (551)
T 3crv_A 165 REFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVENVPKL 243 (551)
T ss_dssp HTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEECSCCCCC
T ss_pred HHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccChHH
Confidence 43311224678999999998655 1
Q ss_pred cHHHHH----------------------------HHHH----------------------------hCCCC-ceEEEEee
Q 015759 138 FEKSLD----------------------------EILN----------------------------VIPRM-RQTYLFSA 160 (401)
Q Consensus 138 ~~~~~~----------------------------~i~~----------------------------~~~~~-~~~i~~SA 160 (401)
+...+. .++. .+... ..+|++||
T Consensus 244 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~svIltSa 323 (551)
T 3crv_A 244 SKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSIILMSG 323 (551)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCceEEEEee
Confidence 000000 0000 01122 57899999
Q ss_pred cCchHHHHHHHHhcCC-CeEEE--ecccccccccceEEEEEcCC----CCh---h---HHHHHHHH---hcCCCCEEEEe
Q 015759 161 TMTKKVKKLQRACLKN-PVKIE--AASKYSTVDTLKQQYRFVPA----KYK---D---CYLVYILT---EVSASSTMVFT 224 (401)
Q Consensus 161 T~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~---~---~~l~~~l~---~~~~~~~ivf~ 224 (401)
|+.+ ...+....... +.... ......++ ..+....++. ... . ..+...+. ...++.++||+
T Consensus 324 TL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~~g~~lvlF 400 (551)
T 3crv_A 324 TLPP-REYMEKVWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAKANVLVVF 400 (551)
T ss_dssp SCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCc-HHHHHHHhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 9976 33344433222 22100 11111222 1222222221 111 1 12222222 23567899999
Q ss_pred cchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEc--CCCCCCCCCC---C--CCEEEEecCCCC
Q 015759 225 RTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICT--DVASRGLDIP---S--VDMVINYDIPTN 297 (401)
Q Consensus 225 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T--~~~~~Gid~~---~--~~~vi~~~~p~s 297 (401)
+|....+.+++ ..+..+..-..+++. ...++.|+.....||++| ..+++|||+| + ++.||....|..
T Consensus 401 ~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp 474 (551)
T 3crv_A 401 PSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYP 474 (551)
T ss_dssp SCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCC
T ss_pred cCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCC
Confidence 99999998887 234444443334443 456777754344799998 6999999999 4 788998887742
Q ss_pred h-------------------h-----------HHHHHhhhcccCCCCceEEEEeccc
Q 015759 298 S-------------------K-----------DYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 298 ~-------------------~-----------~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
. . .+.|.+||+-|..++.-++++++..
T Consensus 475 ~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 475 PPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp CCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred CCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 1 0 1248999999987775566666655
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=177.49 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=106.7
Q ss_pred cccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHH-HHHHHHHhccCCCceEEEEE
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQ-ISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~l~~~~~~~~i~~~~~~ 81 (401)
++.+.+++++++.+|||+|||++++++++..+....... .+.++||++|+++|+.| +.+.+..+... ++.+..++
T Consensus 42 i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~---~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~ 117 (216)
T 3b6e_A 42 AQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKAS---EPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLS 117 (216)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTT---CCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECC
T ss_pred HHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccccc---CCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEe
Confidence 456678999999999999999999998887766543211 46689999999999999 78888888654 67888888
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCC-----CCCCCccEEEEcchhhccccccHH-HHHHHHHhC------
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKG-----FSLGTLKYLVLDEADRLLNDDFEK-SLDEILNVI------ 149 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-----~~~~~~~~iIiDE~h~~~~~~~~~-~~~~i~~~~------ 149 (401)
|+.............++|+|+||++|.+.+..... ..+..+++||+||+|++...++.. .+..++...
T Consensus 118 g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (216)
T 3b6e_A 118 GDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRL 197 (216)
T ss_dssp C---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccc
Confidence 77654333322223589999999999998876532 456788999999999987754443 333433222
Q ss_pred -------CCCceEEEEeec
Q 015759 150 -------PRMRQTYLFSAT 161 (401)
Q Consensus 150 -------~~~~~~i~~SAT 161 (401)
.+..+++++|||
T Consensus 198 ~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 198 KKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHTTCCCCCCCEEEEEECC
T ss_pred cccccCCCCcceEEEeecC
Confidence 145689999998
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=7.3e-22 Score=175.21 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=110.7
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGG 83 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~ 83 (401)
+.++++++.++++|||+|||++++.++...+.. ...++||++|+++|+.||.+++.+++......+..+.++
T Consensus 123 ~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~ 194 (282)
T 1rif_A 123 FEGLVNRRRILNLPTSAGRSLIQALLARYYLEN--------YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGG 194 (282)
T ss_dssp HHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH--------CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTT
T ss_pred HHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc--------CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCC
Confidence 345566788999999999999998876665432 344799999999999999999999976656777777777
Q ss_pred CChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 84 VDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 84 ~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
..... ......+|+|+||+++.+. ....+.++++||+||||++.+ ..+..++..+.+..+++++|||++
T Consensus 195 ~~~~~---~~~~~~~I~v~T~~~l~~~----~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (282)
T 1rif_A 195 ASKDD---KYKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (282)
T ss_dssp CSSTT---CCCTTCSEEEECHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCC
T ss_pred Ccchh---hhccCCcEEEEchHHHHhh----HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCC
Confidence 54432 2224689999999987442 112467889999999998864 467777787777889999999997
Q ss_pred hHH
Q 015759 164 KKV 166 (401)
Q Consensus 164 ~~~ 166 (401)
+..
T Consensus 264 ~~~ 266 (282)
T 1rif_A 264 DGK 266 (282)
T ss_dssp TTS
T ss_pred Ccc
Confidence 653
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=161.31 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=113.6
Q ss_pred ccccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc-CCCceEEEE
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS-GISLRCAVL 80 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~-~~~i~~~~~ 80 (401)
+++.+.+|+++++.||||||||+++.++++........ ....++++++|+++++.|+.+.+..... ..+..+..-
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~ 144 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYS 144 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEE
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEe
Confidence 35667889999999999999999988888876654321 1345899999999999999988876432 333333322
Q ss_pred EcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhc-cccccH-HHHHHHHHhCCCCceEEEE
Q 015759 81 VGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRL-LNDDFE-KSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~ 158 (401)
..... ......++|+|+||+++.+++.. .+.++++||+||+|++ .+.++. ..+..+....+ ..|++++
T Consensus 145 ~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~ 214 (235)
T 3llm_A 145 VRFES-----ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLM 214 (235)
T ss_dssp ETTEE-----ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEE
T ss_pred echhh-----ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEE
Confidence 21110 01113578999999999998876 3788999999999985 555555 45666766664 5789999
Q ss_pred eecCchHHHHHHHHhcCC
Q 015759 159 SATMTKKVKKLQRACLKN 176 (401)
Q Consensus 159 SAT~~~~~~~~~~~~~~~ 176 (401)
|||++... +.+.+...
T Consensus 215 SAT~~~~~--~~~~~~~~ 230 (235)
T 3llm_A 215 SATIDTSM--FCEYFFNC 230 (235)
T ss_dssp ECSSCCHH--HHHHTTSC
T ss_pred ecCCCHHH--HHHHcCCC
Confidence 99998765 44444333
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.83 E-value=4.7e-20 Score=179.67 Aligned_cols=105 Identities=15% Similarity=0.252 Sum_probs=73.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC--CCCCCCCCCC--CCEEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD--VASRGLDIPS--VDMVIN 291 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~--~~~~Gid~~~--~~~vi~ 291 (401)
.++.++||++|....+.+++.++. .... ...+++..++..++++|+ ++..||+++. .+++|||+|+ +..||.
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEE
Confidence 467799999999999999988862 2222 445566678999999999 7788999974 9999999998 779999
Q ss_pred ecCCCCh-----------------------------hHHHHHhhhcccCCCCceEEEEeccc
Q 015759 292 YDIPTNS-----------------------------KDYIHRVGRTARAGRTGVAISLVNQY 324 (401)
Q Consensus 292 ~~~p~s~-----------------------------~~~~Q~~GR~~R~g~~g~~i~~~~~~ 324 (401)
...|... ..+.|.+||+-|...+--++++++..
T Consensus 523 ~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 523 AGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred EcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 8888532 01259999999987765566666654
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.81 E-value=1.3e-19 Score=158.47 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=100.5
Q ss_pred cCCCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhc-CCceEeecCCCCHHHHHHHHhhccCC-Cce-EEEE
Q 015759 199 VPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNL-GQRAIPISGHMSQSKRLGALNKFKAG-ECN-ILIC 273 (401)
Q Consensus 199 ~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vLv~ 273 (401)
.....|...+..++... .+.++||||++...++.+.+.|... |+.+..+||+++..+|..++++|+++ .+. +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567888888888766 7899999999999999999999885 99999999999999999999999998 676 7899
Q ss_pred cCCCCCCCCCCCCCEEEEecCCCChhHHHHHhhhcccCCCCce--EEEEecccc
Q 015759 274 TDVASRGLDIPSVDMVINYDIPTNSKDYIHRVGRTARAGRTGV--AISLVNQYE 325 (401)
Q Consensus 274 T~~~~~Gid~~~~~~vi~~~~p~s~~~~~Q~~GR~~R~g~~g~--~i~~~~~~~ 325 (401)
|+++++|+|++.+++||+||+||++..|.|++||++|.|+.+. ++.++....
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999999997654 456666653
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=1.8e-18 Score=148.74 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=97.5
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCce-EEEEEc
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLR-CAVLVG 82 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~-~~~~~~ 82 (401)
..+++++++++++|||+|||.+++.++.. .+.+++|++|+++|+.||.+.+.++ ++. +..+.|
T Consensus 103 ~~~~~~~~~ll~~~tG~GKT~~a~~~~~~------------~~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g 166 (237)
T 2fz4_A 103 ERWLVDKRGCIVLPTGSGKTHVAMAAINE------------LSTPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSG 166 (237)
T ss_dssp HHHTTTSEEEEEESSSTTHHHHHHHHHHH------------SCSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESS
T ss_pred HHHHhCCCEEEEeCCCCCHHHHHHHHHHH------------cCCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeC
Confidence 34667788999999999999998765543 3456999999999999999999884 466 777777
Q ss_pred CCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 83 GVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 83 ~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.. ...+|+|+||+.+...... ....+++||+||+|++.+..+. .++..++ ..+++++|||+
T Consensus 167 ~~~---------~~~~i~v~T~~~l~~~~~~----~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LSATp 228 (237)
T 2fz4_A 167 RIK---------ELKPLTVSTYDSAYVNAEK----LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTATF 228 (237)
T ss_dssp SCB---------CCCSEEEEEHHHHHHTHHH----HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEEESC
T ss_pred CCC---------CcCCEEEEeHHHHHhhHHH----hcccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEecCC
Confidence 654 2578999999998765543 1245899999999998776554 3555554 45789999999
Q ss_pred chH
Q 015759 163 TKK 165 (401)
Q Consensus 163 ~~~ 165 (401)
...
T Consensus 229 ~r~ 231 (237)
T 2fz4_A 229 ERE 231 (237)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.76 E-value=1.1e-08 Score=99.79 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=78.0
Q ss_pred ccccCCccEEEEcCCCcHHHHH--HHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEE
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGA--FALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLV 81 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~--~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~ 81 (401)
+.++.++.+++.|++|||||++ ++++.+..+.. ..+.++++++||..++.++.+.+.......++.....
T Consensus 159 ~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~- 230 (608)
T 1w36_D 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK- 230 (608)
T ss_dssp HHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-
T ss_pred HHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-
Confidence 4456789999999999999944 44444433210 1456799999999999999888776543332211000
Q ss_pred cCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 82 GGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 82 ~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
..... . ...-..++-.+|+.. .+.... .....++++||||++ |.+ ...+..++..++...|++++.-.
T Consensus 231 ~~~~~--~---~~Tih~ll~~~~~~~--~~~~~~-~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 KRIPE--D---ASTLHRLLGAQPGSQ--RLRHHA-GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CSCSC--C---CBTTTSCC-------------CT-TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred hccch--h---hhhhHhhhccCCCch--HHHhcc-CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEEEEcch
Confidence 00000 0 000011111222211 011111 122368999999999 554 45678888888888888887654
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.36 E-value=5.3e-06 Score=72.66 Aligned_cols=125 Identities=18% Similarity=0.163 Sum_probs=92.7
Q ss_pred cCCCChhHHHHHHHHhc--CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC
Q 015759 199 VPAKYKDCYLVYILTEV--SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV 276 (401)
Q Consensus 199 ~~~~~~~~~l~~~l~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~ 276 (401)
+....|..++..++... .+++++||++..+..+.+.++|...++....+.|.....+ .+. .++.+.+.+.|.+
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----NDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----ccCCceEEEEECC
Confidence 34677888888888754 5789999999999999999999999999999999854432 221 2345566666778
Q ss_pred CCCCCC-----CCCCCEEEEecCCCChhHH-HHHhhhcccCC----CCceEEEEeccccHHH
Q 015759 277 ASRGLD-----IPSVDMVINYDIPTNSKDY-IHRVGRTARAG----RTGVAISLVNQYELEW 328 (401)
Q Consensus 277 ~~~Gid-----~~~~~~vi~~~~p~s~~~~-~Q~~GR~~R~g----~~g~~i~~~~~~~~~~ 328 (401)
++.|+| +...+.||.||..|++..- +|++-|+.|.| +.-.++.++.....+.
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 787886 6779999999999999875 89999999873 3467888887776543
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.12 E-value=1e-05 Score=78.00 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=67.2
Q ss_pred cccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCC
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGV 84 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~ 84 (401)
.++.++.+++.||+|+|||.+. ..++..+.. .+.++++++||...+..+.+.+. .....++
T Consensus 200 ~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--------~g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~Tih--- 260 (574)
T 3e1s_A 200 QLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--------LGLEVGLCAPTGKAARRLGEVTG-------RTASTVH--- 260 (574)
T ss_dssp HHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--------TTCCEEEEESSHHHHHHHHHHHT-------SCEEEHH---
T ss_pred HHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--------cCCeEEEecCcHHHHHHhHhhhc-------ccHHHHH---
Confidence 3456788999999999999763 334433332 56779999999998877766542 1111111
Q ss_pred ChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 85 DMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 85 ~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
..+. . .|+. +.... .....+++|||||++.+ + ...+..++..++...+++++.
T Consensus 261 ------~ll~----~---~~~~----~~~~~-~~~~~~dvlIIDEasml-~---~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 261 ------RLLG----Y---GPQG----FRHNH-LEPAPYDLLIVDEVSMM-G---DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp ------HHTT----E---ETTE----ESCSS-SSCCSCSEEEECCGGGC-C---HHHHHHHHTTSCTTCEEEEEE
T ss_pred ------HHHc----C---Ccch----hhhhh-cccccCCEEEEcCccCC-C---HHHHHHHHHhCcCCCEEEEEe
Confidence 0000 0 0000 00111 12346789999999954 3 346667777777666665553
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.01 E-value=0.00023 Score=70.16 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=46.8
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC--CCceEEEEE
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG--ISLRCAVLV 81 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~--~~i~~~~~~ 81 (401)
+..++|.|++|||||.+.+.-+. .++... .....++|++++|+..+.++.+++.+.... .++.+..+|
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~-~l~~~~----~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIA-WLMSVE----NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFH 91 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHH-HHHHTS----CCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTCEEEEHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHH-HHHHhC----CCChhhEEEEeccHHHHHHHHHHHHHHhccccCCcEEEcHH
Confidence 56799999999999987544333 333221 113457999999999999999999876432 244444443
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.99 E-value=2.6e-05 Score=76.29 Aligned_cols=55 Identities=20% Similarity=0.065 Sum_probs=41.8
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
+.+.-++|.||+|+|||.+... ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 193 l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 193 LQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp HTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3556789999999999987443 44444321 4567999999999999999988764
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.95 E-value=3.7e-05 Score=72.38 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=35.0
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 66 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l 66 (401)
.++|.|++|||||.+. ..++..+... ....+++++||...+..+.+.+
T Consensus 47 ~~li~G~aGTGKT~ll-~~~~~~l~~~-------~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 47 HVTINGPAGTGATTLT-KFIIEALIST-------GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCCEEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCceEEEecCcHHHHHHHHhhh
Confidence 8999999999999753 3344444432 2246999999998877776655
No 100
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.95 E-value=9.3e-06 Score=79.93 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=40.3
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
=.||+||+|||||.+.+- ++..+.. .+.++|+++||..-+.++.+.+....
T Consensus 207 ~~lI~GPPGTGKT~ti~~-~I~~l~~--------~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVE-IILQAVK--------QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp EEEEECCTTSCHHHHHHH-HHHHHHH--------TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ceEEECCCCCCHHHHHHH-HHHHHHh--------CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 478999999999988554 3444443 56789999999999999999887653
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=5.5e-05 Score=75.79 Aligned_cols=56 Identities=21% Similarity=0.151 Sum_probs=42.3
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+.+.-++|.||+|||||.+..- ++..+... .+.++|+++||...+.++.+.+.+.+
T Consensus 373 l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-------~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 373 LQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-------HKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp TTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-------HCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred hcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-------CCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 3455689999999999987543 44444332 34579999999999999999988753
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.86 E-value=6.4e-05 Score=69.08 Aligned_cols=109 Identities=20% Similarity=0.184 Sum_probs=64.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
..+-.++.|+.|+|||..+ .+.+ . ....+|++||++++.+|.+.+.+.+..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I----~~~~-~---------~~~~lVlTpT~~aa~~l~~kl~~~~~~--------------- 210 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEI----LSRV-N---------FEEDLILVPGRQAAEMIRRRANASGII--------------- 210 (446)
T ss_dssp CSEEEEEEECTTSCHHHHH----HHHC-C---------TTTCEEEESCHHHHHHHHHHHTTTSCC---------------
T ss_pred cccEEEEEcCCCCCHHHHH----HHHh-c---------cCCeEEEeCCHHHHHHHHHHhhhcCcc---------------
Confidence 3345678999999999853 2222 1 134699999999999998888543110
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEee
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSA 160 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 160 (401)
.....-+.|.++++- +......-..+++||||+- +.+.+ .+..++...+. .+++++.-
T Consensus 211 -------~~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 211 -------VATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp -------CCCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEEC
T ss_pred -------ccccceEEEeHHhhc---CCCCCCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEecC
Confidence 012234778777633 2221122347899999998 54543 33334444443 43444433
No 103
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.84 E-value=6.4e-05 Score=75.24 Aligned_cols=55 Identities=20% Similarity=0.073 Sum_probs=41.7
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
+.+.-.+|.||+|+|||.+.. .++..+... .+.++++++||...+.++.+.+...
T Consensus 369 l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 369 LQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp HTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 345668999999999998743 344444421 4567999999999999999988764
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.67 E-value=7.3e-05 Score=60.83 Aligned_cols=40 Identities=20% Similarity=0.105 Sum_probs=27.6
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 56 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 56 (401)
+|+-.++.||+|+|||+.++- ++..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~--------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKL--------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeecc
Confidence 467788999999999987433 3333322 456788888874
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.65 E-value=0.00016 Score=60.53 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=62.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..|.-.++.||+|+|||++.+- ++.++.. .+.+++++.|...- . -..+.....++.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~-~~~r~~~--------~g~kVli~~~~~d~--r---~~~~i~srlG~~---------- 65 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIR-RLHRLEY--------ADVKYLVFKPKIDT--R---SIRNIQSRTGTS---------- 65 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHH-HHHHHHH--------TTCCEEEEEECCCG--G---GCSSCCCCCCCS----------
T ss_pred CCcEEEEEECCCCCcHHHHHHH-HHHHHHh--------cCCEEEEEEeccCc--h---HHHHHHHhcCCC----------
Confidence 4567788999999999987443 3333332 56678888876531 0 001112222211
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
...+-+.+.+.++..+.... .-..+++|||||++.+.. ..-..+..+... .. .+++++.
T Consensus 66 ---------~~~~~~~~~~~i~~~i~~~~--~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~~---gi-~Vil~Gl 124 (223)
T 2b8t_A 66 ---------LPSVEVESAPEILNYIMSNS--FNDETKVIGIDEVQFFDD-RICEVANILAEN---GF-VVIISGL 124 (223)
T ss_dssp ---------SCCEEESSTHHHHHHHHSTT--SCTTCCEEEECSGGGSCT-HHHHHHHHHHHT---TC-EEEEECC
T ss_pred ---------ccccccCCHHHHHHHHHHHh--hCCCCCEEEEecCccCcH-HHHHHHHHHHhC---CC-eEEEEec
Confidence 01234556666766665422 234578999999995432 233344443332 33 4455554
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.56 E-value=0.00023 Score=58.01 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=29.2
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 56 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 56 (401)
..|+=.++.||+|+|||++.+- ++.+... .+.+++++.|..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~-~a~r~~~--------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIR-RIRRAKI--------AKQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHHH-HHHHHHH--------CCCEEEEEEecc
Confidence 4567788999999999987443 3333332 677899999874
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0014 Score=57.93 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=19.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
.+.++++.||+|+|||.+. -.++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 5678999999999999763 33444443
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.38 E-value=0.00038 Score=56.30 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=17.3
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..|+.+++.||+|+|||..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45899999999999999753
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.35 E-value=0.00048 Score=56.74 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=28.5
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 57 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 57 (401)
..|+=.++.||+|+|||+.++-.+.. ... .+.+++++.|...
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r-~~~--------~g~kVli~k~~~d 67 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRR-TQF--------AKQHAIVFKPCID 67 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHH-HHH--------TTCCEEEEECC--
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH-HHH--------CCCEEEEEEeccC
Confidence 34666778999999999875443333 322 6778999999764
No 110
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.27 E-value=0.0012 Score=54.21 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=53.0
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
..|.-.++.||+|+|||+..+-. +.+... .+.+++++.|...- ...........++..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~-~~r~~~--------~g~kvli~kp~~D~----R~~~~~I~Sr~G~~~--------- 83 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRR-LRRGIY--------AKQKVVVFKPAIDD----RYHKEKVVSHNGNAI--------- 83 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEEC---------------CBTTBCC---------
T ss_pred CCceEEEEECCCCCCHHHHHHHH-HHHHHH--------cCCceEEEEeccCC----cchhhhHHHhcCCce---------
Confidence 35677889999999999764433 333322 56778999996641 111111222222211
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHH
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEIL 146 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 146 (401)
..+.+..+..+.+.+ ...+++|+|||+| +++...-..+..+.
T Consensus 84 ----------~a~~v~~~~di~~~i-------~~~~dvV~IDEaQ-Ff~~~~v~~l~~la 125 (219)
T 3e2i_A 84 ----------EAINISKASEIMTHD-------LTNVDVIGIDEVQ-FFDDEIVSIVEKLS 125 (219)
T ss_dssp ----------EEEEESSGGGGGGSC-------CTTCSEEEECCGG-GSCTHHHHHHHHHH
T ss_pred ----------eeEEeCCHHHHHHHH-------hcCCCEEEEechh-cCCHHHHHHHHHHH
Confidence 113344443332211 2467899999999 55555555666665
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.22 E-value=0.0025 Score=56.87 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=15.3
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
+.++++.||+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 47899999999999975
No 112
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.14 E-value=0.00047 Score=55.84 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=27.2
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCc
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPT 55 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~ 55 (401)
.|+=.++.||+|+|||...+-. +..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~-i~n~~~--------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRR-VRRFQI--------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHH--------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHH-HHHHHH--------cCCeEEEEccc
Confidence 4677889999999999653332 222222 56779999887
No 113
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.12 E-value=0.00024 Score=55.51 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=16.4
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|+.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999974
No 114
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.04 E-value=0.0094 Score=51.55 Aligned_cols=19 Identities=21% Similarity=0.048 Sum_probs=16.0
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
..+++++.||+|+|||..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SEEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 3468999999999999753
No 115
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.01 E-value=0.0044 Score=57.72 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.6
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
+.++++.||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999753
No 116
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.96 E-value=0.0011 Score=55.13 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 57 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 57 (401)
.|+=.++.||+|+|||..++-.+... .. .+.+++++-|...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~--------~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QI--------AQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HT--------TTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HH--------CCCeEEEEeecCC
Confidence 46778889999999998744433332 22 6778999988753
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.80 E-value=0.015 Score=48.16 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
....+||+||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999976543 2344555555555544444433
No 118
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.72 E-value=0.014 Score=53.84 Aligned_cols=132 Identities=16% Similarity=0.194 Sum_probs=70.1
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEc-Cc-HHHHHHHHHHHHHhccCCCceEEEEEcCCC
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS-PT-RELAIQISEQFEALGSGISLRCAVLVGGVD 85 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~-P~-~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~ 85 (401)
.++-+++.||+|+|||++... +...+ .. .+.+++++. ++ +.-+ .+.+..++...++.+.....+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~k-LA~~l-~~-------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~- 162 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGK-LAYFY-KK-------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ- 162 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHH-HHHHH-HH-------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS-
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHH-HH-------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC-
Confidence 356788899999999986543 22222 22 445565544 32 2211 2333334333344332211111
Q ss_pred hHHHHHHhCCCCCEEEECchHHH-HHHhcCCCCCCCCccEEEEcchhhcc---ccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 86 MMQQTLALGKRPHIVVATPGRLM-DHLTNTKGFSLGTLKYLVLDEADRLL---NDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 86 ~~~~~~~~~~~~~Iii~T~~~l~-~~~~~~~~~~~~~~~~iIiDE~h~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
.|..+. ..+.. +....++++|+|++-++. +..+...+..+.....+..-++.++|+
T Consensus 163 -----------------dp~~i~~~al~~---a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 163 -----------------NPIEIAKKGVDI---FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDAS 222 (433)
T ss_dssp -----------------CHHHHHHHHHHH---TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred -----------------CHHHHHHHHHHH---HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence 122221 12222 123468899999998643 344556666776666666667788888
Q ss_pred CchHHHHHHHH
Q 015759 162 MTKKVKKLQRA 172 (401)
Q Consensus 162 ~~~~~~~~~~~ 172 (401)
...+.......
T Consensus 223 ~gq~a~~~a~~ 233 (433)
T 3kl4_A 223 IGQKAYDLASR 233 (433)
T ss_dssp GGGGGHHHHHH
T ss_pred cchHHHHHHHH
Confidence 65544444433
No 119
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.56 E-value=0.0037 Score=52.84 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=16.5
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.++++++.||+|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 5788999999999999753
No 120
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.56 E-value=0.0093 Score=54.36 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=16.8
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..+.++++.||+|+|||...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 35678999999999999753
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0077 Score=54.95 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=15.4
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
++.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999753
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.47 E-value=0.009 Score=48.04 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=15.6
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
+.++++.||+|+|||..+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 578999999999999753
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.44 E-value=0.0079 Score=53.51 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=24.9
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
...+++++||+|.+........+..++...+...++++ +++.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~-~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIII-TANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEE-EESS
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEE-EeCC
Confidence 36789999999987623334445555555444444444 4443
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.43 E-value=0.0095 Score=48.88 Aligned_cols=17 Identities=35% Similarity=0.266 Sum_probs=15.3
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999853
No 125
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.34 E-value=0.0058 Score=47.13 Aligned_cols=20 Identities=10% Similarity=0.026 Sum_probs=17.1
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..+.++++.||+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 35678999999999999974
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.31 E-value=0.027 Score=48.92 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.6
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..++++++.||+|+|||..
T Consensus 49 ~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCSEEEEESSSSSSHHHH
T ss_pred CCCCeEEEECCCCCcHHHH
Confidence 4678899999999999975
No 127
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.26 E-value=0.0092 Score=53.10 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=15.5
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
.+++++.||+|+|||..+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999753
No 128
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.18 E-value=0.035 Score=50.33 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=41.9
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
.+-+++..+-+.|||.+....++..++.. .+..+++++|+..-+..+.+.+..+..
T Consensus 178 ~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-------~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 178 KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp SSEEEEEECSSSCHHHHHHHHHHHHHHSS-------SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCcCChhHHHHHHHHHHHHhC-------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 35588999999999987666555444321 566799999999999888877776543
No 129
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.17 E-value=0.041 Score=53.31 Aligned_cols=132 Identities=11% Similarity=0.093 Sum_probs=74.7
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCC--ceEEEEEcCCCh
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGIS--LRCAVLVGGVDM 86 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~--i~~~~~~~~~~~ 86 (401)
.+-+++..+-|+|||.+....++..+... ++..++++.|+...+..+.+.++.+....+ +..........
T Consensus 178 ~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~~~~~~~~~- 249 (592)
T 3cpe_A 178 KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-------KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKG- 249 (592)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHHTS-------SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSCCEEEECSS-
T ss_pred ccEEEEEEcCccChHHHHHHHHHHHHHhC-------CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhccccccCCcc-
Confidence 46689999999999987665555444432 456799999999999999888887655432 11111100100
Q ss_pred HHHHHHhCCCCCEEEEC--chHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCC--CceEEEEeecC
Q 015759 87 MQQTLALGKRPHIVVAT--PGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR--MRQTYLFSATM 162 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T--~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~ 162 (401)
...+..+..|.+.+ |+.+ .. .+.+++|+||+|...+. ...+..+...+.. .. .+++..|+
T Consensus 250 ---~i~~~nGs~i~~~s~~~~~l----rG------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~-~ii~isTP 313 (592)
T 3cpe_A 250 ---SIELDNGSSIGAYASSPDAV----RG------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRS-KIIITTTP 313 (592)
T ss_dssp ---EEEETTSCEEEEEECCHHHH----HH------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCC-EEEEEECC
T ss_pred ---EEEecCCCEEEEEeCCCCCc----cC------CCcceEEEehhccCCch--hHHHHHHHHHhccCCCc-eEEEEeCC
Confidence 01112334444333 2322 11 13678999999976442 2344444444432 23 44455566
Q ss_pred ch
Q 015759 163 TK 164 (401)
Q Consensus 163 ~~ 164 (401)
..
T Consensus 314 ~~ 315 (592)
T 3cpe_A 314 NG 315 (592)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.16 E-value=0.051 Score=47.76 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=16.0
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.++++.||+|+|||..+
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4567999999999999753
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.022 Score=48.25 Aligned_cols=54 Identities=13% Similarity=0.046 Sum_probs=34.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
+..|.-+++.||+|+|||...+. ++..+.. .+..++++.... -..++.+.+..+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~-~~~~~~~--------~~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQ-FLWNGLK--------MGEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEEccC-CHHHHHHHHHHc
Confidence 45788899999999999986443 2222222 344577776543 346666666544
No 132
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.12 E-value=0.058 Score=49.73 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=65.8
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEc-C-cHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLS-P-TRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~-P-~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
+.-++++|++|+|||++..- +...+.. .+.+++++. . .+.-+ .+.+..++...++.+.....+
T Consensus 100 p~vIlivG~~G~GKTTt~~k-LA~~l~~--------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~--- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK-LARYFQK--------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE--- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC---
T ss_pred CeEEEEECcCCCCHHHHHHH-HHHHHHH--------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC---
Confidence 46688999999999987543 2233322 445565554 3 23222 334444444344544322111
Q ss_pred HHHHHHhCCCCCEEEECchHHH-HHHhcCCCCCCCCccEEEEcchhhccc-cccHHHHHHHHHhCCCCceEEEEeecCch
Q 015759 87 MQQTLALGKRPHIVVATPGRLM-DHLTNTKGFSLGTLKYLVLDEADRLLN-DDFEKSLDEILNVIPRMRQTYLFSATMTK 164 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~-~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 164 (401)
..|..+. +.+.. +....+++||+|.+-++.. ......+..+.....+..-++.+.||...
T Consensus 165 ---------------~dp~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 165 ---------------KDAIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ 226 (443)
T ss_dssp ---------------CCHHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred ---------------CCHHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch
Confidence 1122221 11111 1123477899998864432 23344455555555555557777887655
Q ss_pred HHHHHHHH
Q 015759 165 KVKKLQRA 172 (401)
Q Consensus 165 ~~~~~~~~ 172 (401)
........
T Consensus 227 ~a~~~a~~ 234 (443)
T 3dm5_A 227 QAYNQALA 234 (443)
T ss_dssp GHHHHHHH
T ss_pred hHHHHHHH
Confidence 44444433
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.11 E-value=0.025 Score=51.37 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.++.+++.||+|+|||..
T Consensus 44 ~~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCCEEEEECTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 367899999999999975
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.10 E-value=0.084 Score=42.29 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.5
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
+.++++.||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 477999999999999753
No 135
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.05 E-value=0.0079 Score=59.43 Aligned_cols=69 Identities=19% Similarity=0.111 Sum_probs=48.4
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC---CCceEEEEEc
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG---ISLRCAVLVG 82 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~---~~i~~~~~~~ 82 (401)
+.+++|.|+.|||||.+..--+...+.... ....++|+++.|+..+.++.+++.+.... .++.+..+|+
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~~v~Tfhs 86 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-----YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHT 86 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHC-----CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEHHH
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcC-----CCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCCEEEeHHH
Confidence 578999999999999885543333333211 13457999999999999999999876432 2455655544
No 136
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.87 E-value=0.027 Score=50.30 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.6
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
.++++.||+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999975
No 137
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.026 Score=50.67 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
....+|++||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35679999999977543 2344555555555544454433
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.85 E-value=0.02 Score=50.34 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.7
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..++.+++.||+|+|||+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCSEEEEECSSSSSHHHH
T ss_pred CCCceEEEECCCCcCHHHH
Confidence 4678899999999999975
No 139
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.76 E-value=0.049 Score=45.51 Aligned_cols=23 Identities=22% Similarity=-0.000 Sum_probs=18.7
Q ss_pred cccCCccEEEEcCCCcHHHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~ 27 (401)
-+..|.-+++.||+|+|||....
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHH
Confidence 35678889999999999997543
No 140
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.69 E-value=0.017 Score=51.36 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+++.||+|+|||+.
T Consensus 44 ~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCSEEEEESSSSSCHHHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 347899999999999975
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.69 E-value=0.016 Score=52.87 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=14.0
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+++.||+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999975
No 142
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.68 E-value=0.02 Score=51.70 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=16.0
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
..+.+++.||+|+|||+.+
T Consensus 83 ~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCCEEEECSTTSCHHHHH
T ss_pred CCceEEEECCCCCcHHHHH
Confidence 3568999999999999753
No 143
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.59 E-value=0.021 Score=53.22 Aligned_cols=53 Identities=21% Similarity=0.018 Sum_probs=32.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~ 67 (401)
+..|.-+++.|++|+|||...+- +...+... .+..++++...- -..|+..++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~-ia~~~a~~-------~g~~vl~~slE~-~~~~l~~R~~ 249 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALT-IAQNAALK-------EGVGVGIYSLEM-PAAQLTLRMM 249 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHH-HHHHHHHT-------TCCCEEEEESSS-CHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHH-HHHHHHHh-------CCCeEEEEECCC-CHHHHHHHHH
Confidence 45677899999999999975444 33333221 244578876643 2456666554
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.063 Score=48.20 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
....++|+||+|. ++......+..++...+....+++.|-.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 4678999999997 5544555666666666655545444433
No 145
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.13 Score=46.64 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+|+.||+|+|||+.
T Consensus 181 ~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CCCCEEEESCSSSSHHHH
T ss_pred CCCceEEeCCCCCCHHHH
Confidence 458899999999999974
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.50 E-value=0.051 Score=48.10 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
....++|+||+|.+.... ...+..++...+....++ ++++.+
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i-~~~~~~ 150 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFI-LSCNYS 150 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEE-EEESCG
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEE-EEeCCc
Confidence 456799999999775432 334455555555544444 444433
No 147
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.49 E-value=0.011 Score=54.93 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.6
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46999999999999753
No 148
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.49 E-value=0.034 Score=52.35 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.4
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
...+++++.||+|+|||+.
T Consensus 236 ~~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCCCEEEEECSTTSSHHHH
T ss_pred CCCCcEEEECcCCCCHHHH
Confidence 4567899999999999985
No 149
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.40 E-value=0.048 Score=49.83 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
..+++++.||+|+|||..+
T Consensus 147 ~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4589999999999999753
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.39 E-value=0.041 Score=51.46 Aligned_cols=52 Identities=19% Similarity=0.083 Sum_probs=32.4
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQF 66 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l 66 (401)
+..|.-+++.|++|+|||...+. +...+... .+..++|+..... ..|+..++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~-ia~~~~~~-------~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALN-IAQNVATK-------TNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHH-HHHHHHHH-------SSCCEEEEESSSC-HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH-HHHHHHHh-------CCCcEEEEECCCC-HHHHHHHH
Confidence 55788899999999999976444 33333221 3445778765432 24555554
No 151
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.34 E-value=0.075 Score=42.99 Aligned_cols=142 Identities=17% Similarity=0.098 Sum_probs=69.7
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH-HHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE-LAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
.-.+++..++|.|||.+++-.++..+- .+.+|+++.=.+. .-..-.+.+..+ ++.....-.+....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g---------~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~ 94 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG---------HGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWE 94 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH---------TTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---------CCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccC
Confidence 357899999999999987766665554 6778888833221 000001122222 12222111111100
Q ss_pred HHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccc--cHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 88 QQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDD--FEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
.+...- +. ......++..... +.-..+++||+||+-.....+ -.+.+..++...|....+|+.+--+++.
T Consensus 95 ~~~~~~----~~--~~a~~~l~~a~~~--l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 95 TQNREA----DT--AACMAVWQHGKRM--LADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp GGGHHH----HH--HHHHHHHHHHHHH--TTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred CCCcHH----HH--HHHHHHHHHHHHH--HhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000000 00 0001111212211 123578999999997543322 2345666777777666565555556666
Q ss_pred HHHHHH
Q 015759 166 VKKLQR 171 (401)
Q Consensus 166 ~~~~~~ 171 (401)
+.+.++
T Consensus 167 l~e~AD 172 (196)
T 1g5t_A 167 ILDLAD 172 (196)
T ss_dssp HHHHCS
T ss_pred HHHhCc
Confidence 665543
No 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.31 E-value=0.04 Score=51.29 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=15.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+++.||+|+|||+.
T Consensus 166 ~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCSEEEEECSTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 457899999999999975
No 153
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.26 E-value=0.083 Score=47.76 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
.....+|||||+|.+.... ...+...+...+... +++++++
T Consensus 117 ~~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~-~~Il~~~ 157 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHV-KFLLATT 157 (373)
T ss_dssp SSSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSE-EEEEEES
T ss_pred cCCeEEEEEECcchhcHHH-HHHHHHHHhcCCCce-EEEEEeC
Confidence 3456899999999775433 333444445444444 3444444
No 154
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.20 E-value=0.031 Score=54.90 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=40.3
Q ss_pred ccCCc-cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC
Q 015759 6 CDAGK-DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG 72 (401)
Q Consensus 6 ~~~g~-~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~ 72 (401)
+..|. ...+.+.||||||+++.. ++.. ....+|||+|+..++.|+++.++.+...
T Consensus 28 ~~~~~~~~~l~g~~gs~k~~~~a~-~~~~-----------~~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 28 IQEGKKHQTLLGATGTGKTFTVSN-LIKE-----------VNKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp HHTTCSEEEEEECTTSCHHHHHHH-HHHH-----------HCCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred HhcCCCcEEEECcCCcHHHHHHHH-HHHH-----------hCCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 34453 467889999999986432 2222 1234899999999999999999999643
No 155
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.12 E-value=0.035 Score=60.43 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=31.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
+..|+++++.+|+|+|||..+...+.+... .+.+++++.....+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~---------~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECTTSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH---------cCCcEEEEEccccc
Confidence 446899999999999999875544333322 55678888776443
No 156
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.09 E-value=0.043 Score=48.98 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.5
Q ss_pred cEEEEcCCCcHHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~ 27 (401)
.+++.||+|+|||..+.
T Consensus 26 a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIY 42 (334)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEECCCCchHHHHHH
Confidence 48999999999997643
No 157
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.07 E-value=0.2 Score=39.28 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=54.5
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-+..+++.|... ++.+..++|+.+...+...+ ....+|+|+|. . +. ..+++.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~----~~--~Gld~~ 102 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-V----AA--RGIDIE 102 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-G----GT--TTCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-h----hh--cCCchh
Confidence 4557999999999999999999875 47889999987765544332 34678999992 1 22 235777
Q ss_pred CccEEEEcch
Q 015759 121 TLKYLVLDEA 130 (401)
Q Consensus 121 ~~~~iIiDE~ 130 (401)
.+++||.-+.
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888886443
No 158
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.04 E-value=0.031 Score=55.66 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=46.8
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccC--CCceEEEEEc
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSG--ISLRCAVLVG 82 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~--~~i~~~~~~~ 82 (401)
+.+++|.|+.|||||.+...-+...+... .....++|+++.|+..+.++.+++.+.... .++.+..+|+
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ri~~ll~~~-----~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~~v~Tfhs 94 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTHRIAYLMAEK-----HVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHS 94 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTT-----CCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTSEEEEHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCcEEeeHHH
Confidence 56899999999999988544333333221 114457999999999999999998876321 2355555443
No 159
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.01 E-value=0.24 Score=41.30 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=13.7
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+++.||+|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999975
No 160
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.97 E-value=0.034 Score=47.14 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=27.6
Q ss_pred CCccEEEEcchhhccc-----cccHHHHHHHHHhCCCCceEEEEeecCchH
Q 015759 120 GTLKYLVLDEADRLLN-----DDFEKSLDEILNVIPRMRQTYLFSATMTKK 165 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~-----~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 165 (401)
.+.+++++||.-.+.+ ......+..++..+......++++......
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4578999999997765 444444666665554333356666655443
No 161
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.94 E-value=0.059 Score=53.77 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=64.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-CCCCCCCCCCCEEE
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-ASRGLDIPSVDMVI 290 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-~~~Gid~~~~~~vi 290 (401)
.+.++++.++++.-|...++.+.+. ++.+..++|+++..++...++.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 4679999999999888888777654 789999999999999999999999999999999984 33456777888877
Q ss_pred E
Q 015759 291 N 291 (401)
Q Consensus 291 ~ 291 (401)
.
T Consensus 496 I 496 (780)
T 1gm5_A 496 I 496 (780)
T ss_dssp E
T ss_pred e
Confidence 5
No 162
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.92 E-value=0.088 Score=44.29 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=18.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
+..|.-+.+.||+|+|||..+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 45788899999999999986443
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.89 E-value=0.023 Score=50.96 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=27.8
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTR 56 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~ 56 (401)
+..|+-+++.||+|+|||...+. +...+.. .+..++++.-..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~-la~~~~~--------~g~~vlyi~~E~ 99 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALH-AVANAQA--------AGGIAAFIDAEH 99 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHH-HHHHHHh--------CCCeEEEEECCC
Confidence 34678899999999999986444 3333322 345677776543
No 164
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.88 E-value=0.028 Score=59.43 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
.+++++|.|..|||||.+.+--++..+.... ......++|++++|+..+.++.+++...
T Consensus 22 ~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~---~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 22 TGQDILVAAAAGSGKTAVLVERMIRKITAEE---NPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CSSCEEEEECTTCCHHHHHHHHHHHHHSCSS---SCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC---CCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 4789999999999999985544444333211 1124457999999999999999888764
No 165
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.83 E-value=0.18 Score=47.16 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=41.6
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhcc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGS 71 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~ 71 (401)
...|....+.+-+|||||+++. .+... .+..+|||+|+...+.|+++.++.+..
T Consensus 11 ~~~~~~~~l~g~~gs~ka~~~a-----~l~~~-------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 11 VKAGEQRLLGELTGAACATLVA-----EIAER-------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp CSTTCEEEEECCCTTHHHHHHH-----HHHHH-------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCCCeEEEeCCCchHHHHHHH-----HHHHH-------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 3467788999999999997532 22221 344589999999999999999999864
No 166
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.80 E-value=0.041 Score=49.64 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=28.7
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 57 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 57 (401)
+..|.-++|.||+|+|||...+. ++..+.. .+..++|+.....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~-la~~~~~--------~g~~vlyi~~E~s 113 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALA-IVAQAQK--------AGGTCAFIDAEHA 113 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH-HHHHHHH--------TTCCEEEEESSCC
T ss_pred ccCCcEEEEEcCCCCChHHHHHH-HHHHHHH--------CCCeEEEEECCCC
Confidence 44678899999999999976443 3333332 3446777776543
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.80 E-value=0.031 Score=50.07 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=29.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL 58 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 58 (401)
+..|.-++|.||+|+|||... +.++..+.. .+..++++.....+
T Consensus 58 i~~G~i~~I~GppGsGKSTLa-l~la~~~~~--------~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLA-LHAIAEAQK--------MGGVAAFIDAEHAL 101 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHH-HHHHHHHHH--------TTCCEEEEESSCCC
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHHHHHh--------cCCeEEEEeccccc
Confidence 346788999999999999753 333333332 44567888765544
No 168
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.75 E-value=0.076 Score=51.48 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=59.9
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQT 90 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~ 90 (401)
-.++.|+-|.|||.+.-+ ++..+. ..++|.+|+.+-+..+.+...+
T Consensus 194 ~~vlta~RGRGKSa~lG~-~~a~~~-----------~~~~vtAP~~~a~~~l~~~~~~---------------------- 239 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQ-LISRIA-----------GRAIVTAPAKASTDVLAQFAGE---------------------- 239 (671)
T ss_dssp EEEEEECTTSSHHHHHHH-HHHHSS-----------SCEEEECSSCCSCHHHHHHHGG----------------------
T ss_pred eEEEecCCCCCHHHHHHH-HHHHHH-----------hCcEEECCCHHHHHHHHHHhhC----------------------
Confidence 368999999999965433 333321 1369999998865544433221
Q ss_pred HHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecCc
Q 015759 91 LALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATMT 163 (401)
Q Consensus 91 ~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 163 (401)
.|-+..|+.+.. .....+++|||||=.+ -.+.+..++...+ .++||.|..
T Consensus 240 -------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaI----p~pll~~ll~~~~----~v~~~tTv~ 289 (671)
T 2zpa_A 240 -------KFRFIAPDALLA--------SDEQADWLVVDEAAAI----PAPLLHQLVSRFP----RTLLTTTVQ 289 (671)
T ss_dssp -------GCCBCCHHHHHH--------SCCCCSEEEEETGGGS----CHHHHHHHHTTSS----EEEEEEEBS
T ss_pred -------CeEEeCchhhhh--------CcccCCEEEEEchhcC----CHHHHHHHHhhCC----eEEEEecCC
Confidence 033445665432 2335889999999955 3556666666433 578888863
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.72 E-value=0.04 Score=48.84 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=15.2
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
..++++.||+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 47899999999999975
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.58 E-value=0.14 Score=45.06 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=22.5
Q ss_pred CccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEe
Q 015759 121 TLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFS 159 (401)
Q Consensus 121 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 159 (401)
...+||+||+|.+.... ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46799999999775432 233444555555544444443
No 171
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.092 Score=46.92 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=24.2
Q ss_pred CCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEE
Q 015759 120 GTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLF 158 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 158 (401)
...+++|+||+|.+... ....+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 34789999999977543 344555666666655544443
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.46 E-value=0.18 Score=44.16 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=24.7
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
....+++|+||+|.+.... ...+...+..-|+.. ++++.++-
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t-~fIl~t~~ 121 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYA-VIVLNTRR 121 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTE-EEEEEESC
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCe-EEEEEECC
Confidence 3467899999999875433 233444555544444 44444443
No 173
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.44 E-value=0.72 Score=40.12 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.3
Q ss_pred CCccEEEEcCCCcHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~ 27 (401)
.|+-+.+.+++|+|||+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 56778888999999997643
No 174
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.26 E-value=0.076 Score=50.80 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=16.3
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|..+++.||+|+|||+.
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999974
No 175
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.21 E-value=0.33 Score=38.02 Aligned_cols=74 Identities=9% Similarity=0.211 Sum_probs=53.5
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
...++||.|+++.-+..+++.+.+. ++.+..++|+.+...+...+ .....|+|+|.- +. ..+++.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~G~d~~ 97 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-----LA--RGIDVQ 97 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG-----GT--TTCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh-----hh--cCCCcc
Confidence 4567999999999999999999875 47888999988765544332 346789999921 22 235677
Q ss_pred CccEEEEcc
Q 015759 121 TLKYLVLDE 129 (401)
Q Consensus 121 ~~~~iIiDE 129 (401)
.+++||.-+
T Consensus 98 ~~~~Vi~~~ 106 (165)
T 1fuk_A 98 QVSLVINYD 106 (165)
T ss_dssp SCSEEEESS
T ss_pred cCCEEEEeC
Confidence 788887644
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.16 E-value=0.17 Score=48.08 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=24.3
Q ss_pred CCccEEEEcchhhccccc--cHHHHHHHHHhCCCCceEEEEeecC
Q 015759 120 GTLKYLVLDEADRLLNDD--FEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 120 ~~~~~iIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
....+|+|||+|.+.... ....+..++... ...+++++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 346799999999876532 223444444442 23466666654
No 177
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.15 E-value=0.84 Score=35.99 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=53.8
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
...++||.|+++.-+..+++.|... ++.+..++|+.+...+...+ .....|+|+|.- ....+++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-------~~~Gldi~ 98 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-------FGRGMDIE 98 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-------CSTTCCGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-------hhcCcchh
Confidence 4557999999999999999999875 47888999988765544332 346889999932 12235677
Q ss_pred CccEEEEcc
Q 015759 121 TLKYLVLDE 129 (401)
Q Consensus 121 ~~~~iIiDE 129 (401)
.+++||.-+
T Consensus 99 ~~~~Vi~~d 107 (172)
T 1t5i_A 99 RVNIAFNYD 107 (172)
T ss_dssp GCSEEEESS
T ss_pred hCCEEEEEC
Confidence 788888643
No 178
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.13 E-value=0.024 Score=50.09 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=14.1
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
++++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999753
No 179
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.11 E-value=0.26 Score=39.09 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=53.3
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
...++||.|+++.-+..+++.|... ++.+..++|+.+...+...+ ....+|+|+|.- ....+++.
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-------~~~Gid~~ 101 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-------CARGIDVK 101 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-------CCTTTCCT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-------hhcCCCcc
Confidence 4568999999999999999888875 47888999998765544332 346889999921 12335777
Q ss_pred CccEEEE
Q 015759 121 TLKYLVL 127 (401)
Q Consensus 121 ~~~~iIi 127 (401)
.+++||.
T Consensus 102 ~~~~Vi~ 108 (175)
T 2rb4_A 102 QVTIVVN 108 (175)
T ss_dssp TEEEEEE
T ss_pred cCCEEEE
Confidence 8888885
No 180
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.02 E-value=0.37 Score=39.60 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=53.6
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.||++.-++.+++.+... ++.+..++|+.+...+...+ ....+|+|+|.- +. ..+++.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~~--~Gidi~ 98 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-----AA--RGLDIP 98 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-----TT--CSSSCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-----hh--cCCCCc
Confidence 4567999999999999999999876 47888999998766544333 346789999921 22 235777
Q ss_pred CccEEEE
Q 015759 121 TLKYLVL 127 (401)
Q Consensus 121 ~~~~iIi 127 (401)
.+++||.
T Consensus 99 ~v~~Vi~ 105 (212)
T 3eaq_A 99 QVDLVVH 105 (212)
T ss_dssp CBSEEEE
T ss_pred cCcEEEE
Confidence 8888874
No 181
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.71 E-value=0.13 Score=47.26 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=63.7
Q ss_pred cCCCCEEEEecchHHHHHHHHHHHh---cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCC----CCCCCCCCC
Q 015759 215 VSASSTMVFTRTCDATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS----RGLDIPSVD 287 (401)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~----~Gid~~~~~ 287 (401)
..+.+++|.+|++.-+..+++.+++ .++.+..++|+.+..++....+.+..+..+|+|+|+-.- .-++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3678899999999999999999998 578999999999999888888889888899999998321 114555778
Q ss_pred EEEE
Q 015759 288 MVIN 291 (401)
Q Consensus 288 ~vi~ 291 (401)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.50 E-value=0.41 Score=43.73 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.3
Q ss_pred CCccEEE--EcCCCcHHHHHH
Q 015759 8 AGKDLIG--LAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii--~a~tGsGKT~~~ 26 (401)
.+..+++ .||+|+|||...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHH
Confidence 3457888 899999999753
No 183
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.50 E-value=0.079 Score=46.35 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=52.7
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMM 87 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~ 87 (401)
.| -+++.+|+|+|||...+. ++..+.... .+.+++++....++... .++.++-..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq-~~~~~~~~g------~g~~vlyId~E~s~~~~---ra~~lGvd~-------------- 82 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLT-MVSSYMRQY------PDAVCLFYDSEFGITPA---YLRSMGVDP-------------- 82 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHH-HHHHHHHHC------TTCEEEEEESSCCCCHH---HHHHTTCCG--------------
T ss_pred CC-eEEEECCCCCCHHHHHHH-HHHHHHhcC------CCceEEEEeccchhhHH---HHHHhCCCH--------------
Confidence 45 689999999999986444 333333211 25678898876665332 355544211
Q ss_pred HHHHHhCCCCCEEEECchHHHHH----HhcCCCCCCCCccEEEEcchhhcc
Q 015759 88 QQTLALGKRPHIVVATPGRLMDH----LTNTKGFSLGTLKYLVLDEADRLL 134 (401)
Q Consensus 88 ~~~~~~~~~~~Iii~T~~~l~~~----~~~~~~~~~~~~~~iIiDE~h~~~ 134 (401)
.++++..|..+... +.....+.-..+++||||-+..+.
T Consensus 83 ---------d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ---------ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp ---------GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred ---------HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12445444443332 111100122468999999999775
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.39 E-value=0.037 Score=42.61 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=17.5
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
...+.++++.||+|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 45778999999999999975
No 185
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.11 E-value=0.12 Score=43.65 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=33.9
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
..|.-+++.|++|+|||...+-.+.+.+.. .+..+++++-.. -..++.+.+..+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~--------~~~~v~~~s~E~-~~~~~~~~~~~~ 81 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEE--------YGEPGVFVTLEE-RARDLRREMASF 81 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHH--------HCCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--------cCCCceeecccC-CHHHHHHHHHHc
Confidence 457889999999999997644433333332 234567766543 346666666554
No 186
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.00 E-value=0.49 Score=41.84 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=32.8
Q ss_pred CccEEEEcchhhcc-ccccHHHHHHHHHhCCCCceEEEEeecCchHHHHHHHHh
Q 015759 121 TLKYLVLDEADRLL-NDDFEKSLDEILNVIPRMRQTYLFSATMTKKVKKLQRAC 173 (401)
Q Consensus 121 ~~~~iIiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 173 (401)
..+++++|.+.+.. .......+..+...+.+...++.+.++...+.......+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 35678899887543 234455566666666566667788887766555544443
No 187
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.87 E-value=0.26 Score=49.10 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+|+.||+|+|||+.
T Consensus 237 ~p~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 347899999999999974
No 188
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.84 E-value=0.59 Score=37.68 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=52.7
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCCC
Q 015759 46 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGT 121 (401)
Q Consensus 46 ~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 121 (401)
+.++||.|+++.-+..+++.|... ++.+..++|+.+...+...+ ....+|+|+| +.+.. .+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~--Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASK--GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHT--TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchhc--CCCccc
Confidence 346999999999999999999876 47888999988765544332 2368899999 22233 356778
Q ss_pred ccEEEEc
Q 015759 122 LKYLVLD 128 (401)
Q Consensus 122 ~~~iIiD 128 (401)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888763
No 189
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.68 E-value=0.045 Score=44.26 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=18.4
Q ss_pred ccccccCCccEEEEcCCCcHHHHH
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~ 25 (401)
-|..+.+|+.+++.||+|||||+.
T Consensus 2 ~m~~i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 2 NMTDDLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp ----CCTTEEEEEEECTTSCHHHH
T ss_pred CccCCCCCeEEEEECCCCCCHHHH
Confidence 356778899999999999999974
No 190
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.41 E-value=0.14 Score=45.05 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.5
Q ss_pred CccEEEEcCCCcHHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~ 27 (401)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6899999999999997543
No 191
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.27 E-value=0.17 Score=51.45 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
..++++.||+|+|||..
T Consensus 191 ~~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCCEEEECTTSCHHHH
T ss_pred CCceEEEcCCCCCHHHH
Confidence 46899999999999975
No 192
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.18 E-value=0.15 Score=47.22 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAI 60 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 60 (401)
....++++.|+||+|||.. +..++..++. .+..++|+=|..++..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~-~~~li~~~~~--------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVL-LRELAYTGLL--------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHH-HHHHHHHHHH--------TTCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHH-HHHHHHHHHH--------CCCcEEEEeCCCchhH
Confidence 3568999999999999986 4445555544 4556888888888753
No 193
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.84 E-value=0.3 Score=42.98 Aligned_cols=54 Identities=9% Similarity=-0.118 Sum_probs=34.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
+..|.-+++.|++|+|||...+..+... .. .+..+++++.. .-..|+..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~-a~--------~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNM-SD--------NDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHH-HT--------TTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH-HH--------cCCeEEEEECC-CCHHHHHHHHHHH
Confidence 4567889999999999997544433332 21 33567887754 3456666666554
No 194
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.80 E-value=3.5 Score=36.43 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=24.6
Q ss_pred ccEEEEcchhhccc---cccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 122 LKYLVLDEADRLLN---DDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 122 ~~~iIiDE~h~~~~---~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
.-+||+||+|.+.. ..+...+..+....++ . .++++++.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~-~-~~i~~g~~ 179 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKR-I-KFIMSGSE 179 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTT-E-EEEEEESS
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCC-e-EEEEEcCc
Confidence 44899999998753 4566666666665432 2 34555554
No 195
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.61 E-value=0.23 Score=49.98 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..++.+++.||+|+|||+.
T Consensus 235 i~~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHH
T ss_pred CCCCCeEEEECcCCCCHHHH
Confidence 45678999999999999974
No 196
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.55 E-value=0.72 Score=44.52 Aligned_cols=60 Identities=18% Similarity=0.169 Sum_probs=54.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhc--cCCCceEEEEcC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKF--KAGECNILICTD 275 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vLv~T~ 275 (401)
..+.+||.+|++.-+....+.|.+.|+.+..++|+++..++...+..+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467899999999999999999999999999999999999988888877 567889999998
No 197
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=91.29 E-value=1.9 Score=41.18 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=56.4
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-++.+++.+.+... .++.+..+||+.+...+...+ ....+|+|+|.- +. ..+++.
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~--~GiDip 409 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA--RGMDFP 409 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT--SSCCCT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch-----hh--cCCCcc
Confidence 567899999999999999999987643 257888899988765544332 246889999931 22 236778
Q ss_pred CccEEEEcc
Q 015759 121 TLKYLVLDE 129 (401)
Q Consensus 121 ~~~~iIiDE 129 (401)
.+++||.-.
T Consensus 410 ~v~~VI~~~ 418 (563)
T 3i5x_A 410 NVHEVLQIG 418 (563)
T ss_dssp TCCEEEEES
T ss_pred cCCEEEEEC
Confidence 888888644
No 198
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=91.05 E-value=1 Score=39.22 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=52.8
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-++.+++.+... ++.+..++|+.+...+...+ ....+|+|+|.- +. ..+++.
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v-----a~--~Gidi~ 95 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV-----AA--RGLDIP 95 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST-----TT--CSTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech-----hh--cCcccc
Confidence 4567999999999999888888764 57889999997765544333 236889999921 22 235778
Q ss_pred CccEEEE
Q 015759 121 TLKYLVL 127 (401)
Q Consensus 121 ~~~~iIi 127 (401)
.+++||.
T Consensus 96 ~v~~VI~ 102 (300)
T 3i32_A 96 QVDLVVH 102 (300)
T ss_dssp CCSEEEE
T ss_pred ceeEEEE
Confidence 8888875
No 199
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.73 E-value=0.4 Score=49.97 Aligned_cols=77 Identities=12% Similarity=0.123 Sum_probs=64.0
Q ss_pred cCCCCEEEEecchHHHHHHHHHHHh---cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCCC-C---CCCCCCCC
Q 015759 215 VSASSTMVFTRTCDATRLLALMLRN---LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVAS-R---GLDIPSVD 287 (401)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~~-~---Gid~~~~~ 287 (401)
..+.++||.+|++.-|.++++.+++ .++.+..++|+++..++...++.+.+|..+|+|+|+-.- . -+++.++.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3677899999999999999999998 567899999999998888899999999999999997221 1 14456788
Q ss_pred EEEE
Q 015759 288 MVIN 291 (401)
Q Consensus 288 ~vi~ 291 (401)
++|.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 200
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=90.47 E-value=2.6 Score=40.55 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=56.9
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.||++.-++.+++.+.+... .++.+..+||+.+...+...+ ....+|+|+|.- +. ..+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-----~~--~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-----GA--RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-----GT--SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-----hh--cCCCcc
Confidence 567899999999999999999987643 257888999998765544332 246789999931 22 346778
Q ss_pred CccEEEEcch
Q 015759 121 TLKYLVLDEA 130 (401)
Q Consensus 121 ~~~~iIiDE~ 130 (401)
.+++||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8888886543
No 201
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.45 E-value=0.89 Score=43.19 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=55.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 275 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~ 275 (401)
..+.+||.++++.-+....+.|+..|+.+..++++.+..++......+..+..+++++|+
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 357899999999999999999999999999999999999988888889899999999997
No 202
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.36 E-value=2.6 Score=36.61 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=16.1
Q ss_pred CccEEEEcCCCcHHHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~ 28 (401)
++-+++.+++|+|||+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 66788899999999986443
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.33 E-value=0.13 Score=41.97 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=18.1
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+.|+-+++.||+|||||+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHH
T ss_pred ccccCCEEEEECCCCCCHHHH
Confidence 467889999999999999974
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.29 E-value=0.27 Score=43.52 Aligned_cols=61 Identities=16% Similarity=0.020 Sum_probs=34.4
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH-HHHHHHHHHHh
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL-AIQISEQFEAL 69 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L-~~q~~~~l~~~ 69 (401)
+..|.-+++.||+|+|||...+..+........ ....+..++++.-...+ ..++...++.+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~---~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE---KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG---GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc---cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456788999999999999764432222111100 00014567887765432 45555555554
No 205
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.27 E-value=1.1 Score=35.74 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=44.4
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-+..+++.|... ++.+..++|+.+...+...+ .....|+|+|. . +. ..+++.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-~----~~--~Gldi~ 113 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V----AA--RGLDIS 113 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------------CCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-h----hh--cCCCcc
Confidence 4567999999999999999998875 47888899876654332221 23678999992 2 12 234677
Q ss_pred CccEEEE
Q 015759 121 TLKYLVL 127 (401)
Q Consensus 121 ~~~~iIi 127 (401)
.+++||.
T Consensus 114 ~~~~VI~ 120 (185)
T 2jgn_A 114 NVKHVIN 120 (185)
T ss_dssp SBSEEEE
T ss_pred cCCEEEE
Confidence 7888776
No 206
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.20 E-value=0.99 Score=47.29 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=63.7
Q ss_pred cCCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC-CCCCCCCCCCCCEE
Q 015759 215 VSASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-VASRGLDIPSVDMV 289 (401)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~-~~~~Gid~~~~~~v 289 (401)
..+.+++|.+++...+...++.+.+. +..+..+++..+..++...++.+..|..+|+|+|. .+...+.+.++.+|
T Consensus 650 ~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 650 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceE
Confidence 35679999999999998888877643 67889999999999999999999999999999997 44455777777777
Q ss_pred EE
Q 015759 290 IN 291 (401)
Q Consensus 290 i~ 291 (401)
|.
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 207
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.16 E-value=0.16 Score=40.54 Aligned_cols=22 Identities=18% Similarity=-0.010 Sum_probs=18.4
Q ss_pred cccCCccEEEEcCCCcHHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~ 26 (401)
....++.+++.|++|||||+..
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHHH
Confidence 4456788999999999999853
No 208
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.06 E-value=0.17 Score=43.33 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.5
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.-+.+.||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45788899999999999975
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.94 E-value=0.14 Score=41.69 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=16.9
Q ss_pred ccCCccEEEEcCCCcHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+..++.+++.||+|||||+..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHH
Confidence 346789999999999999853
No 210
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.91 E-value=0.2 Score=50.12 Aligned_cols=16 Identities=44% Similarity=0.453 Sum_probs=14.2
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999753
No 211
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.79 E-value=0.11 Score=49.02 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=17.6
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.++++.||||||||+.
T Consensus 257 v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHH
T ss_pred HhCCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 212
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.76 E-value=5.4 Score=36.51 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.2
Q ss_pred CCccEEEEcCCCcHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~ 27 (401)
.++-+.+.++.|+|||++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46678888999999998644
No 213
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.70 E-value=0.37 Score=43.54 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|..+++.||||||||+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 45688899999999999975
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.66 E-value=0.16 Score=40.62 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.4
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|+-+++.||+|+|||+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 215
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.63 E-value=0.62 Score=46.46 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.4
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+|+.||+|+|||+.
T Consensus 510 ~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCSCCEEESSTTSSHHHH
T ss_pred CCceEEEecCCCCCchHH
Confidence 347899999999999974
No 216
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.59 E-value=0.35 Score=43.37 Aligned_cols=19 Identities=26% Similarity=0.242 Sum_probs=16.1
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|..+++.||||||||+.
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566899999999999975
No 217
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.51 E-value=0.098 Score=46.50 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=18.1
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
++..+.++++.||+|+|||..
T Consensus 42 ~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHH
Confidence 455688999999999999974
No 218
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=89.47 E-value=0.58 Score=49.29 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=31.1
Q ss_pred EEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 13 IGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 13 ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
+|.|..|||||.+.+--+...+.... .+.++|+++|... .-+..+++..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~------~~~~il~lVP~q~-TFt~~~rl~~ 53 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP------FGKPIIFLVPDQM-TFLMEYELAK 53 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT------TSSCEEEECCGGG-HHHHHHHHTC
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC------CCCcEEEEecCcc-cHHHHHHHHH
Confidence 67899999999985544443333221 4567999999774 3334444444
No 219
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.44 E-value=0.39 Score=51.78 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=58.3
Q ss_pred cCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCCh
Q 015759 7 DAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDM 86 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~ 86 (401)
-.|+.+.+.+|.|||||+.++. ++..... .+..++++.+-.+|-... +++++-++
T Consensus 1429 prg~~iei~g~~~sGkttl~~~-~~a~~~~--------~g~~~~~i~~e~~~~~~~---~~~~Gv~~------------- 1483 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQ-VIAAAQR--------EGKTCAFIDAEHALDPIY---ARKLGVDI------------- 1483 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEECTTSCCCHHH---HHHTTCCG-------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHH-HHHHHHh--------cCCeEEEEecCCCCCHHH---HHHcCCCH-------------
Confidence 3578899999999999987544 4433333 667788998877775443 55554321
Q ss_pred HHHHHHhCCCCCEEEECchHHHHHHhcCCC-CCCCCccEEEEcchhhccc
Q 015759 87 MQQTLALGKRPHIVVATPGRLMDHLTNTKG-FSLGTLKYLVLDEADRLLN 135 (401)
Q Consensus 87 ~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~-~~~~~~~~iIiDE~h~~~~ 135 (401)
.++++..|+.--+++.-... ..-..+++||||.+-.+..
T Consensus 1484 ----------~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 ----------DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ----------GGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ----------HHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 12666666543332221110 1223578999999886554
No 220
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.26 E-value=2.3 Score=35.72 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=52.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-----C--CCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----A--SRGLDIP 284 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-----~--~~Gid~~ 284 (401)
.+.+++|.++++..+..+++.+++. +..+..++|+.+.......+. +..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4567999999999998888777665 788899999987655443332 45789999962 1 2356777
Q ss_pred CCCEEEE
Q 015759 285 SVDMVIN 291 (401)
Q Consensus 285 ~~~~vi~ 291 (401)
.++++|.
T Consensus 186 ~~~~lVi 192 (249)
T 3ber_A 186 ALKYLVM 192 (249)
T ss_dssp TCCEEEE
T ss_pred ccCEEEE
Confidence 7888775
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=89.23 E-value=0.39 Score=41.85 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=17.4
Q ss_pred CCccEEEEcCCCcHHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~ 28 (401)
+|+.+++.||+|+|||+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 577899999999999986443
No 222
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.98 E-value=2 Score=35.10 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=53.3
Q ss_pred CCCEEEEecchHHHHHHHHHHHhc-----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC------CCCCCCCCC
Q 015759 217 ASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV------ASRGLDIPS 285 (401)
Q Consensus 217 ~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~------~~~Gid~~~ 285 (401)
..+++|.++++..+...++.+++. +..+..++|+.+.......+ ..+..+|+|+|.- -...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999988888775 67889999998876554433 3456789999962 123356777
Q ss_pred CCEEEE
Q 015759 286 VDMVIN 291 (401)
Q Consensus 286 ~~~vi~ 291 (401)
++++|.
T Consensus 159 ~~~lVi 164 (220)
T 1t6n_A 159 IKHFIL 164 (220)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 887775
No 223
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.88 E-value=0.22 Score=40.33 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.3
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|+-+++.||||+|||..
T Consensus 32 ~~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSET 50 (205)
T ss_dssp ETTEEEEEECCCTTTTHHH
T ss_pred ECCEEEEEECCCCCCHHHH
Confidence 3578899999999999975
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.78 E-value=0.46 Score=42.60 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=28.7
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 57 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 57 (401)
+..|+-+++.|++|+|||..++..+. .+.. .+..++++.....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~-~~~~--------~g~~vlyid~E~s 102 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA-AAQR--------EGKTCAFIDAEHA 102 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH-HHHH--------TTCCEEEEESSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH-HHHH--------CCCeEEEEeCCCC
Confidence 44678899999999999986544333 3322 3446777776433
No 225
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.75 E-value=0.79 Score=40.66 Aligned_cols=53 Identities=23% Similarity=0.103 Sum_probs=34.5
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
+..|.=+++.|++|+|||..++-.+. .+.. .+..++|++.-- -..|+..++..
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~-~~a~--------~g~~Vl~fSlEm-s~~ql~~Rlls 95 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVL-SALN--------DDRGVAVFSLEM-SAEQLALRALS 95 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHH-HHHH--------TTCEEEEEESSS-CHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH-HHHH--------cCCeEEEEeCCC-CHHHHHHHHHH
Confidence 45677799999999999976544333 3322 455678877643 34666666544
No 226
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.68 E-value=0.19 Score=40.91 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|+-+.+.||+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999974
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.65 E-value=0.23 Score=43.92 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.5
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.++-++|.||||+|||...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3457899999999999753
No 228
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.55 E-value=0.41 Score=42.23 Aligned_cols=64 Identities=13% Similarity=-0.038 Sum_probs=35.1
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhh---hcCCCCc----eeEEEEcCcHHH-HHHHHHHHHHh
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAE---NQRTVPA----FFACVLSPTREL-AIQISEQFEAL 69 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~~----~~~lil~P~~~L-~~q~~~~l~~~ 69 (401)
+..|.-+++.||+|+|||...+..+....+.... ...-..+ ..++|+.-...+ ..++.+.+..+
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 3467889999999999997644333321111000 0000012 678888765443 45566555554
No 229
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.52 E-value=0.53 Score=43.65 Aligned_cols=54 Identities=9% Similarity=-0.095 Sum_probs=34.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
+..|.-+++.|++|+|||...+-.+.. +.. .+..+++++.-- -..|+..++...
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~-~a~--------~g~~vl~fSlEm-s~~ql~~R~~~~ 247 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKN-MSD--------NDDVVNLHSLEM-GKKENIKRLIVT 247 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHH-HHH--------TTCEEEEECSSS-CTTHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHH-HHH--------cCCEEEEEECCC-CHHHHHHHHHHH
Confidence 456788999999999999765443333 322 345688887643 345666665543
No 230
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.48 E-value=0.24 Score=40.30 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=14.4
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+.+++.||+|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45899999999999754
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.40 E-value=0.21 Score=39.98 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=15.7
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
++.+++.|++|||||+..
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 578999999999999854
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.37 E-value=0.22 Score=40.64 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=16.9
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.-+.+.||+|||||+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 45688899999999999974
No 233
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.37 E-value=0.22 Score=39.48 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
++-+++.|++|||||++
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 56789999999999985
No 234
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.31 E-value=0.22 Score=40.71 Aligned_cols=24 Identities=25% Similarity=-0.090 Sum_probs=20.2
Q ss_pred ccccccCCccEEEEcCCCcHHHHH
Q 015759 2 LLWFCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 2 ~l~~~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+.+..+.-+.+.|++|||||+.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHH
Confidence 356677888899999999999974
No 235
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.30 E-value=0.12 Score=48.79 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.4
Q ss_pred cccccCCccEEEEcCCCcHHHHH
Q 015759 3 LWFCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 3 l~~~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.++..|.++++.||+|+|||..
T Consensus 35 ~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 35 LLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHhcCCeeEeecCchHHHHHH
Confidence 34567889999999999999974
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.30 E-value=0.22 Score=43.39 Aligned_cols=18 Identities=22% Similarity=-0.012 Sum_probs=15.2
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+++.||+|+|||..
T Consensus 35 ~p~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQ 52 (293)
T ss_dssp CCSEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346799999999999974
No 237
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.28 E-value=0.53 Score=43.31 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+|+.||+|+|||+.
T Consensus 214 ~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCCeeEEECcCCCCHHHH
Confidence 458899999999999974
No 238
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.27 E-value=0.53 Score=38.96 Aligned_cols=21 Identities=29% Similarity=0.150 Sum_probs=16.6
Q ss_pred ccEEEEcCCCcHHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPI 30 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~ 30 (401)
-++++.++.|+|||+.++-.+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHH
Confidence 368999999999998755433
No 239
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.20 E-value=4.6 Score=37.94 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=23.1
Q ss_pred CccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcC
Q 015759 9 GKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSP 54 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P 54 (401)
.+.+++++++|+|||+.+.. +...+.. .+.+++++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~k-LA~~l~~--------~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSK-LAYYYQR--------KGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHH-HHHHHHH--------TTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHHh--------CCCeEEEEec
Confidence 35688999999999986443 2222222 3555666654
No 240
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.19 E-value=0.22 Score=44.81 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.7
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+.+++.||||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45899999999999999974
No 241
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.12 E-value=0.23 Score=42.28 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.1
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
...+.+++.||+|+|||..
T Consensus 37 ~~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCCEEEEESCTTSSHHHH
T ss_pred CCCceEEEECCCCCCHHHH
Confidence 3457799999999999975
No 242
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.12 E-value=0.22 Score=42.53 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=17.1
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..+.++++.||+|+|||..
T Consensus 26 ~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHH
T ss_pred hCCCCCEEEECCCCCcHHHH
Confidence 34678999999999999974
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.11 E-value=0.21 Score=39.54 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|.-+.+.||+|||||+.
T Consensus 6 i~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp EESSEEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEECCCCCCHHHH
Confidence 45788899999999999975
No 244
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.05 E-value=0.55 Score=43.21 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+|+.||+|+|||+.
T Consensus 214 ~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 458899999999999975
No 245
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.00 E-value=0.23 Score=39.74 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.6
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..+..+++.|++|||||++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSM 26 (184)
T ss_dssp CSSCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999985
No 246
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.00 E-value=0.45 Score=39.08 Aligned_cols=23 Identities=22% Similarity=-0.003 Sum_probs=18.9
Q ss_pred ccCCccEEEEcCCCcHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
+..|.-+++.||+|+|||..+..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHH
Confidence 56788899999999999976443
No 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.93 E-value=0.55 Score=40.80 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.5
Q ss_pred ccCCccEEEEcCCCcHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~ 27 (401)
+..|.-+++.||+|+|||....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 5678889999999999997543
No 248
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.87 E-value=0.23 Score=43.26 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.++.+++.||+|+|||+.
T Consensus 53 ~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCSEEEEESSSSSCHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 468999999999999975
No 249
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.83 E-value=0.62 Score=42.80 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.7
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+|+.||+|+|||+.
T Consensus 205 ~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCCEEEEESCTTTTHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 457899999999999974
No 250
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.80 E-value=0.78 Score=39.45 Aligned_cols=25 Identities=20% Similarity=-0.057 Sum_probs=20.1
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
.-+..|.-+++.||+|+|||+.+..
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHH
Confidence 3456788999999999999986443
No 251
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.78 E-value=2.7 Score=38.01 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=54.2
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-+..+++.+.+. ++.+..++|+.+...+...+ ....+|+|+|. .+. ..+++.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 333 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVE 333 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCT
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCcc
Confidence 4568999999999999999999876 46788899988765544332 34678999993 122 346788
Q ss_pred CccEEEEc
Q 015759 121 TLKYLVLD 128 (401)
Q Consensus 121 ~~~~iIiD 128 (401)
.+++||.-
T Consensus 334 ~~~~Vi~~ 341 (412)
T 3fht_A 334 QVSVVINF 341 (412)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEE
Confidence 88888853
No 252
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.78 E-value=0.36 Score=44.30 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=16.0
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|..+++.||||||||+.
T Consensus 165 ~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSSEEEEEECSTTSCHHHH
T ss_pred hcCCeEEEECCCCCCHHHH
Confidence 3566789999999999975
No 253
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.72 E-value=0.61 Score=36.97 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=31.7
Q ss_pred ccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISE 64 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 64 (401)
+=.++.++-|++|+...+.-++.. .+. .+.++.+++|+..-...+.+
T Consensus 52 ~~~iv~g~ggs~~~~~~~a~L~~~-a~~-------~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 52 SLAIVSGQGGAAGQRERVAELVMM-ARE-------QGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp CEECCBCSSCSHHHHHHHHHHHHH-HHH-------TTCCEEEECSTTHHHHHHSC
T ss_pred ceEEEecccchHHHHHHHHHHHHH-HHh-------cCeEEEEEcCchHHHHHHHh
Confidence 346778999999998754333222 222 78889999999875444433
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.68 E-value=0.32 Score=39.86 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.4
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|+-+++.||+|+|||..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3677899999999999985
No 255
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.60 E-value=0.45 Score=43.35 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=28.5
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 57 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 57 (401)
.+.++++.||||+|||...-. ++..+.. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~--------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM--------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH--------CCCEEEEEeCCcC
Confidence 577899999999999975433 3333322 4556788878765
No 256
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.30 E-value=2.3 Score=35.43 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=52.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-----CC-CCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----AS-RGLDIPS 285 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-----~~-~Gid~~~ 285 (401)
.+.++||.+++++-+..+++.+++. +..+..++|+.+.......+.. ..+|+|+|+- +. ..+++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 3567999999999888887766653 7889999999887766554432 3689999962 21 2356777
Q ss_pred CCEEEE
Q 015759 286 VDMVIN 291 (401)
Q Consensus 286 ~~~vi~ 291 (401)
++++|.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888774
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.21 E-value=0.28 Score=39.92 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.6
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|+-+.+.||+|||||+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 4678899999999999974
No 258
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=87.19 E-value=3 Score=37.64 Aligned_cols=73 Identities=10% Similarity=0.153 Sum_probs=53.4
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
...++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .....|+|+|.- + ...+++.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~-----~--~~Gidip 325 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL-----L--TRGIDIQ 325 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC-----S--SSSCCCT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc-----c--ccCCCcc
Confidence 4568999999999999999999876 46788899988765544332 346789999921 1 2335777
Q ss_pred CccEEEEc
Q 015759 121 TLKYLVLD 128 (401)
Q Consensus 121 ~~~~iIiD 128 (401)
.+++||.-
T Consensus 326 ~~~~Vi~~ 333 (400)
T 1s2m_A 326 AVNVVINF 333 (400)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEe
Confidence 88888853
No 259
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.17 E-value=0.27 Score=44.28 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.6
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 5689999999999999853
No 260
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.16 E-value=23 Score=34.60 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=57.4
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+|+.-++.+.+.|.+. ++.+..++|+.+...+...+ ....+|+|+|.- + ...+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~-----l--~~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL-----L--REGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC-----C--CTTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh-----h--hcCccCC
Confidence 4668999999999999999999876 46788889887655444332 246889999821 1 2346788
Q ss_pred CccEEEEcchhhc
Q 015759 121 TLKYLVLDEADRL 133 (401)
Q Consensus 121 ~~~~iIiDE~h~~ 133 (401)
.+++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 8999998887643
No 261
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.14 E-value=0.2 Score=44.47 Aligned_cols=20 Identities=45% Similarity=0.511 Sum_probs=17.5
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+.+.+.||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 35789999999999999973
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=87.13 E-value=0.28 Score=38.60 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=15.1
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
+..+.+.||+|||||+.
T Consensus 4 ~~~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI 20 (173)
T ss_dssp CCCEEEECCTTSCHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999974
No 263
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.02 E-value=0.28 Score=42.81 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.+.++++.||+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 367899999999999975
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=86.83 E-value=0.31 Score=40.28 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+-+.+.||+|+|||+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45788899999999999974
No 265
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=86.79 E-value=3.4 Score=37.49 Aligned_cols=73 Identities=8% Similarity=0.191 Sum_probs=53.3
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
...++||.|+++.-++.+++.+.+. ++.+..++|+.+...+...+ .....|+|+|.- +. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-----~~--~Gidi~ 343 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-----WA--RGLDVP 343 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-----GS--SSCCCT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-----hh--CcCCcc
Confidence 4457999999999999999999875 46788899988765544332 236789999931 22 346788
Q ss_pred CccEEEEc
Q 015759 121 TLKYLVLD 128 (401)
Q Consensus 121 ~~~~iIiD 128 (401)
.+++||.-
T Consensus 344 ~v~~Vi~~ 351 (410)
T 2j0s_A 344 QVSLIINY 351 (410)
T ss_dssp TEEEEEES
T ss_pred cCCEEEEE
Confidence 88888863
No 266
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.51 E-value=3.5 Score=37.03 Aligned_cols=75 Identities=9% Similarity=0.087 Sum_probs=55.0
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+...+...+ .....|+|+|.- -...+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-------~~~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-------FGRGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC-------CSSCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh-------hhcCCCcc
Confidence 5568999999999999999999875 46788899987765443332 346789999921 12346788
Q ss_pred CccEEEEcch
Q 015759 121 TLKYLVLDEA 130 (401)
Q Consensus 121 ~~~~iIiDE~ 130 (401)
.+++||.-+.
T Consensus 318 ~~~~Vi~~~~ 327 (391)
T 1xti_A 318 RVNIAFNYDM 327 (391)
T ss_dssp TEEEEEESSC
T ss_pred cCCEEEEeCC
Confidence 8888887544
No 267
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=86.42 E-value=0.37 Score=42.09 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=14.7
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
++-++|.||||+|||..+
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 455788999999999753
No 268
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.39 E-value=0.29 Score=40.68 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=15.3
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
....+..+++.|++|||||+.
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp ----CCEEEEEECTTSSHHHH
T ss_pred ccccCcEEEEECCCCCCHHHH
Confidence 344567899999999999985
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=86.38 E-value=0.31 Score=39.05 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.2
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
++..+++.|++|||||+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467799999999999985
No 270
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.38 E-value=1.7 Score=41.89 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=30.0
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
+.+.+++++||.-.-+|......+...+..+.+.. .+++.+.-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH~ 538 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIAHR 538 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 45678999999998888777777777666655433 55555543
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.35 E-value=0.43 Score=38.32 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=13.8
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
+-++++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 272
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.34 E-value=0.3 Score=38.62 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|+.+++.||+|||||+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 567899999999999975
No 273
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.22 E-value=0.31 Score=41.40 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
.+.+++.||+|+|||+.
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46799999999999975
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=86.12 E-value=0.34 Score=39.37 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=16.0
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|+.+++.||+|||||+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 578899999999999974
No 275
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=86.11 E-value=3.4 Score=28.93 Aligned_cols=51 Identities=14% Similarity=0.304 Sum_probs=43.2
Q ss_pred EEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceE
Q 015759 220 TMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNI 270 (401)
Q Consensus 220 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 270 (401)
.+||.+..+-...+.+.++..|..+..++++....-|.+-++.|.+...++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 467888888888999999999999999999999998888899997654444
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.09 E-value=0.46 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.7
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|+-+++.||+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 4788899999999999974
No 277
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=85.98 E-value=15 Score=32.75 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=56.0
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
...++||.|+++.-++.+++.++.. ++.+..++|+.+...+...+ ....+|+|+|. .+ ...+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~--~~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL--ARGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG--SSSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh--hcCCCcc
Confidence 4567999999999999999999875 46788899987765544332 34678999993 12 2346788
Q ss_pred CccEEEEcchh
Q 015759 121 TLKYLVLDEAD 131 (401)
Q Consensus 121 ~~~~iIiDE~h 131 (401)
.+++||.-+..
T Consensus 311 ~~~~Vi~~~~p 321 (395)
T 3pey_A 311 TVSMVVNYDLP 321 (395)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEcCCC
Confidence 89999875554
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=85.93 E-value=0.36 Score=38.66 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=14.3
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
|+-+.+.||+|+|||+.
T Consensus 1 ~~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCCEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45678999999999974
No 279
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.90 E-value=0.98 Score=41.30 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=15.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+.+|+.||+|+|||+.
T Consensus 215 ~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CCSEEEEESSTTTTHHHH
T ss_pred CCCCCceECCCCchHHHH
Confidence 458899999999999974
No 280
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.89 E-value=0.32 Score=38.24 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=13.2
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
-+++.||+|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 281
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.83 E-value=0.39 Score=43.20 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.6
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
++++++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999753
No 282
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=85.73 E-value=0.36 Score=39.94 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=16.4
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
+...|+-+.+.||.|+|||+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 356788899999999999974
No 283
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.53 E-value=0.29 Score=39.13 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.2
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.|..+++.|++|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5678999999999999853
No 284
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=85.50 E-value=2.3 Score=38.62 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=53.8
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-++.+++.+.+. ++.+..++|+.+...+...+ ....+|+|+|. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 4667999999999999999999875 47888999988765544332 23678999993 2333 35777
Q ss_pred CccEEEE
Q 015759 121 TLKYLVL 127 (401)
Q Consensus 121 ~~~~iIi 127 (401)
.+++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 285
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=85.44 E-value=1.8 Score=39.94 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=46.7
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccE
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~ 124 (401)
.+.+++|+||++.-++++++.|++. ++++..+||+........-.....+|+|+|.- +. ..++++ +++
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v-----~e--~GiDip-v~~ 243 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATDI-----AE--MGANLC-VER 243 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESSS-----TT--CCTTCC-CSE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECCh-----hh--eeeccC-ceE
Confidence 3567999999999999999999886 47888889854333322223346899999931 22 235677 777
Q ss_pred EE
Q 015759 125 LV 126 (401)
Q Consensus 125 iI 126 (401)
||
T Consensus 244 VI 245 (440)
T 1yks_A 244 VL 245 (440)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 286
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.29 E-value=0.4 Score=39.20 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=16.4
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
.+..|+-+.+.||+|+|||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 356788899999999999974
No 287
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=85.26 E-value=0.39 Score=42.76 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=18.9
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEec
Confidence 456678877 566799999999985
No 288
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.11 E-value=0.39 Score=42.02 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=17.0
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..+.++++.||+|+|||..
T Consensus 22 a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHH
T ss_pred hCCCCcEEEECCCCchHHHH
Confidence 34578899999999999975
No 289
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=85.07 E-value=1.5 Score=37.20 Aligned_cols=55 Identities=16% Similarity=0.063 Sum_probs=34.6
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhc
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALG 70 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~ 70 (401)
+..|..+++.+.+|+|||+..+. .+...+. .+-++++++-. +-..++.+.++.++
T Consensus 18 l~~gs~~li~g~p~~~~~~l~~q-fl~~g~~--------~Ge~~~~~~~~-e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 18 KKHSLILIHEEDASSRGKDILFY-ILSRKLK--------SDNLVGMFSIS-YPLQLIIRILSRFG 72 (260)
T ss_dssp CTTCEEEEEECSGGGCHHHHHHH-HHHHHHH--------TTCEEEEEECS-SCHHHHHHHHHHTT
T ss_pred CCCCcEEEEEeCCCccHHHHHHH-HHHHHHH--------CCCcEEEEEEe-CCHHHHHHHHHHcC
Confidence 34678889997888888843333 3333222 55567777664 44577778887765
No 290
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.99 E-value=0.88 Score=42.01 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.4
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
...+.+|+.||+|+|||+.
T Consensus 241 ~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CCCSEEEECSCTTSSHHHH
T ss_pred CCCCceEeeCCCCCcHHHH
Confidence 3468899999999999974
No 291
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=84.88 E-value=1.2 Score=47.00 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCccEEEEcCCCcHHHHHHHHHHHHHHHHHhh---hcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 8 AGKDLIGLAQTGSGKTGAFALPILQALLEIAE---NQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
.|.+ +|.|..|||||.+...-++..++.... ........++|+|+=|+.-+.++.+++.+.
T Consensus 16 ~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 16 QGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4544 999999999999876666666653210 001124567999999999999998888764
No 292
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.78 E-value=0.9 Score=42.73 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=22.2
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
..+.++.+++|.|+||||||.+ +..++..++
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~-L~~li~sLl 192 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVG-VNAMILSML 192 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEcccCceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3456788999999999999975 333444333
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.77 E-value=0.42 Score=43.23 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.2
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
...++++.||+|+|||..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4578999999999999753
No 294
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=84.70 E-value=1 Score=39.35 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+..|.-+.+.||+|+|||+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHH
Confidence 346788999999999999853
No 295
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.62 E-value=1 Score=39.38 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.4
Q ss_pred CCccEEEEcCCCcHHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~~ 27 (401)
.++-+++.+|+|+|||+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHH
Confidence 45678899999999998643
No 296
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.44 E-value=0.51 Score=41.14 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=13.9
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+-++|.||||+|||..+
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 34788999999999753
No 297
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.38 E-value=0.52 Score=43.90 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.3
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.++++++.||+|+|||..+
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 4578999999999999754
No 298
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.31 E-value=0.46 Score=39.24 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=16.4
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..+..+++.|++|||||+..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQC 22 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34577999999999999853
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.27 E-value=0.44 Score=38.70 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=16.6
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..|.-+.+.||+|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35778899999999999753
No 300
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=84.21 E-value=0.34 Score=40.37 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=13.2
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+-+.+.||+|+|||+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45688899999999999975
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=84.16 E-value=0.42 Score=38.33 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.-+++.|++|||||+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999853
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=84.10 E-value=0.43 Score=37.73 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.7
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
+-+++.|++|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3578999999999985
No 303
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=84.10 E-value=0.42 Score=42.60 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=18.8
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 78 v~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 78 VQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHCCcceeEEEeCCCCCCCceEe
Confidence 456678877 466799999999985
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.09 E-value=0.54 Score=39.87 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.6
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
-+++.||||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999753
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.07 E-value=1.2 Score=35.47 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=16.7
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..|..+++.|++|||||+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 35678999999999999853
No 306
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=84.05 E-value=0.31 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=18.5
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 445677877 666799999999974
No 307
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.00 E-value=0.65 Score=38.30 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=16.8
Q ss_pred ccCCccEEEEcCCCcHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+.+.+-+++.||+||||++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH
Confidence 445567888999999999864
No 308
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.96 E-value=1.1 Score=39.15 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|.-+.+.||+|+|||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTl 118 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT 118 (304)
T ss_dssp SSSEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 467788999999999985
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=83.96 E-value=0.36 Score=38.70 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.3
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
|+-+++.||+|+|||+.
T Consensus 2 g~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 45678999999999984
No 310
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.94 E-value=0.45 Score=37.28 Aligned_cols=15 Identities=13% Similarity=-0.164 Sum_probs=13.3
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+++.|++|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999985
No 311
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.82 E-value=4.5 Score=37.21 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=52.1
Q ss_pred eEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCCCcc
Q 015759 48 FACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGTLK 123 (401)
Q Consensus 48 ~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~ 123 (401)
.+||.|+++.-+..+++.+.+. ++.+..+||+.+...+...+ ....+|+|+|. .+. ..+++..++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCC
Confidence 3999999999999999998875 47888999998766544433 34688999993 122 346788888
Q ss_pred EEEE
Q 015759 124 YLVL 127 (401)
Q Consensus 124 ~iIi 127 (401)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 312
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.68 E-value=0.48 Score=40.09 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.0
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
+.+++.||+|+|||+.
T Consensus 50 ~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHL 65 (254)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4499999999999974
No 313
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=84.18 E-value=0.22 Score=39.38 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=49.2
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHhC----CCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALG----KRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.|+++.-+..+++.|... ++.+..++|+.+...+...+. ...+|+|+| +. +.. .+++.
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~----~~~--Gid~~ 97 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DV----AAR--GIDIP 97 (170)
Confidence 4567999999999999888888765 467788888866544333322 256799999 21 222 24566
Q ss_pred CccEEEEcc
Q 015759 121 TLKYLVLDE 129 (401)
Q Consensus 121 ~~~~iIiDE 129 (401)
.+++||.-+
T Consensus 98 ~~~~Vi~~~ 106 (170)
T 2yjt_D 98 DVSHVFNFD 106 (170)
Confidence 677776533
No 314
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.60 E-value=0.49 Score=42.47 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=16.4
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
..+.+++.||+|+|||..+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 315
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=83.41 E-value=2.8 Score=34.46 Aligned_cols=72 Identities=15% Similarity=0.257 Sum_probs=47.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc---CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC------CCCCCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL---GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV------ASRGLDIPSV 286 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~------~~~Gid~~~~ 286 (401)
.+.+++|.++++..+..+++.++.. +..+..++|+.+...+...+ . ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 5678999999999999999988875 66788888887655433332 2 24789999961 2234567778
Q ss_pred CEEEE
Q 015759 287 DMVIN 291 (401)
Q Consensus 287 ~~vi~ 291 (401)
+++|.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87774
No 316
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.35 E-value=0.29 Score=41.87 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
.+.+++.||+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 56799999999999975
No 317
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=83.34 E-value=0.53 Score=45.46 Aligned_cols=15 Identities=13% Similarity=0.388 Sum_probs=13.9
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 318
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=83.33 E-value=3.1 Score=34.37 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc-----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCC------CCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA------SRGLDIP 284 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~------~~Gid~~ 284 (401)
.+.+++|.+++++.+...++.++.. +..+..++|+.+..++...+ ...+|+|+|.-- ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 4568999999999999999888775 56788899998876654443 246899999831 1235566
Q ss_pred CCCEEEE
Q 015759 285 SVDMVIN 291 (401)
Q Consensus 285 ~~~~vi~ 291 (401)
.++++|.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6777764
No 319
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.32 E-value=0.96 Score=42.70 Aligned_cols=54 Identities=9% Similarity=-0.042 Sum_probs=33.8
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEA 68 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~ 68 (401)
+..|.-++|.|++|+|||...+-.+.. +... .+..+++++--- -..|+..++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~-~a~~-------~g~~vl~~s~E~-s~~~l~~r~~~ 292 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQ-WGTA-------MGKKVGLAMLEE-SVEETAEDLIG 292 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHH-HTTT-------SCCCEEEEESSS-CHHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHH-HHHh-------cCCcEEEEeccC-CHHHHHHHHHH
Confidence 456788999999999999764443332 2211 145678876643 34566666543
No 320
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.30 E-value=0.53 Score=39.84 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=16.9
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
+.|+.+++.|++|+|||+.
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3489999999999999985
No 321
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=83.28 E-value=0.37 Score=42.50 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=18.5
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 345667877 666799999999974
No 322
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.28 E-value=1.2 Score=39.55 Aligned_cols=61 Identities=10% Similarity=0.005 Sum_probs=33.3
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHH-HHHHHHHHHHh
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTREL-AIQISEQFEAL 69 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L-~~q~~~~l~~~ 69 (401)
+..|.-+++.||+|+|||...+..+....... .....+..++|+.....+ ..++...+..+
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~---~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPG---AGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCB---TTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhccc---ccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 44678899999999999975433222211100 000124567777765431 34455555544
No 323
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=83.10 E-value=1.2 Score=42.43 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=22.4
Q ss_pred ccccCCccEEEEcCCCcHHHHHHHHHHHHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAFALPILQALL 35 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~ 35 (401)
+.+.+.-+++|.|.||||||.+ +..++..++
T Consensus 209 ~DL~k~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 209 TDLAKMPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp EEGGGSCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEhhhCCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 3455678999999999999976 444444444
No 324
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.02 E-value=0.52 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.1
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+++++.|++|||||++.
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 68999999999999853
No 325
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.02 E-value=1.3 Score=39.01 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.0
Q ss_pred cCCccEEEEcCCCcHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~ 27 (401)
..++-+.+.+|+|+|||+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 456778899999999998644
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=83.00 E-value=0.63 Score=38.49 Aligned_cols=21 Identities=24% Similarity=0.134 Sum_probs=17.8
Q ss_pred ccCCccEEEEcCCCcHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+..|.-+.+.||+|+|||+.+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 457888999999999999753
No 327
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=82.89 E-value=5.2 Score=36.88 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=50.8
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc--------CCChHHHHHHh----CCCCCEEEECchHHHHHHh
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG--------GVDMMQQTLAL----GKRPHIVVATPGRLMDHLT 112 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~--------~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~ 112 (401)
.+.++||.++++.-+..+.+.+... ++.+..++| +.+...+...+ .....|+|+| +.+ .
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T-~~~----~ 430 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT-SVG----E 430 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-GGG----G
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEEC-Ccc----c
Confidence 5668999999999999999999876 578888888 44433222221 2357899999 221 2
Q ss_pred cCCCCCCCCccEEEEcchh
Q 015759 113 NTKGFSLGTLKYLVLDEAD 131 (401)
Q Consensus 113 ~~~~~~~~~~~~iIiDE~h 131 (401)
..+++...++||+-+..
T Consensus 431 --~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 431 --EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp --GGGGSTTCCEEEESSCC
T ss_pred --cCCCchhCCEEEEeCCC
Confidence 23567778888865443
No 328
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.86 E-value=5.2 Score=32.07 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=50.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc-----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-----CCC-CCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL-----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----ASR-GLDIP 284 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-----~~~-Gid~~ 284 (401)
.+.++++.++++..+...++.+.+. +..+..++|+.+..+....+ .+..+|+|+|.- +.. .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3457999999999999888888664 56788888888765443322 245789999972 222 34566
Q ss_pred CCCEEEE
Q 015759 285 SVDMVIN 291 (401)
Q Consensus 285 ~~~~vi~ 291 (401)
+++++|.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777774
No 329
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.82 E-value=0.64 Score=40.88 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.4
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+.+++.||||+|||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999753
No 330
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=82.81 E-value=0.46 Score=42.89 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=18.5
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 445667877 556799999999874
No 331
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.80 E-value=0.76 Score=40.45 Aligned_cols=15 Identities=27% Similarity=0.162 Sum_probs=12.9
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
-+++.|+.|+|||+.
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999974
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=82.69 E-value=0.52 Score=37.77 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.3
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.-+++.|++|||||+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp -CEEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 333
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=82.48 E-value=0.44 Score=42.56 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=18.2
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345667777 566799999999874
No 334
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=82.45 E-value=0.43 Score=43.46 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=18.4
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 133 v~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 133 VQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHhCCcceEEEEECCCCCCCceEe
Confidence 345567877 566799999999985
No 335
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=82.40 E-value=0.4 Score=43.59 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=18.1
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345567766 566799999999984
No 336
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=82.38 E-value=0.42 Score=42.59 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=18.1
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345567766 566799999999874
No 337
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=82.37 E-value=0.44 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.417 Sum_probs=18.4
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 345667877 566799999999974
No 338
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=82.35 E-value=0.63 Score=38.97 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=17.0
Q ss_pred ccCCccEEEEcCCCcHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTG 24 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~ 24 (401)
+..|+-+.+.||.|||||+
T Consensus 28 i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 4578889999999999997
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.33 E-value=0.62 Score=38.41 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=16.0
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+..+++.|++|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 340
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=82.31 E-value=1.4 Score=39.48 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+..|.-+.+.||+|+|||+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHH
Confidence 346778999999999999853
No 341
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.23 E-value=4.8 Score=32.30 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc--CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-----C-CCCCCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL--GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----A-SRGLDIPSVD 287 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-----~-~~Gid~~~~~ 287 (401)
.+.++++.++++..+...++.+++. +..+..++|+.+.......+. ...+|+|+|.- + ...+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999999876 356778888876654433332 24689999961 1 1235667788
Q ss_pred EEEE
Q 015759 288 MVIN 291 (401)
Q Consensus 288 ~vi~ 291 (401)
++|.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 342
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.20 E-value=0.5 Score=40.94 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.2
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.+.-+++.||+|||||+.
T Consensus 32 ~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356689999999999975
No 343
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=82.20 E-value=0.63 Score=37.67 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=16.1
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|..+++.|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 577899999999999985
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=82.18 E-value=0.59 Score=37.53 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=16.6
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..+..+++.|++|||||+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35678999999999999853
No 345
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.15 E-value=0.65 Score=39.93 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.9
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
+.+++.||+|+|||+.
T Consensus 45 ~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLL 60 (274)
T ss_dssp SEEEEESSTTSCHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4499999999999974
No 346
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=82.15 E-value=0.43 Score=42.78 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=18.3
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 345667777 566799999999974
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.11 E-value=0.62 Score=36.76 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.4
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+.+++.|++|||||+..
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999853
No 348
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=82.10 E-value=0.37 Score=42.82 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.0
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567766 566799999999974
No 349
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=82.07 E-value=0.44 Score=42.12 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=17.8
Q ss_pred ccccCCcc--EEEEcCCCcHHHHHH
Q 015759 4 WFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 4 ~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
..++.|.| ++..|+||||||+++
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 74 TSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhCCCEEEEEeECCCCCCCcEEE
Confidence 34567777 566799999999874
No 350
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=82.04 E-value=0.54 Score=42.30 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=18.6
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 455677877 566799999999874
No 351
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=81.98 E-value=0.61 Score=36.96 Aligned_cols=18 Identities=28% Similarity=0.315 Sum_probs=15.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|..+++.|++|||||+.
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567789999999999975
No 352
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=81.95 E-value=0.44 Score=42.40 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=18.4
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..+++|.| ++..|+||||||++.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345667877 566799999999974
No 353
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.89 E-value=0.57 Score=40.92 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=14.8
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 47999999999999753
No 354
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=81.85 E-value=0.43 Score=42.87 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=18.1
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||++.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345667776 566799999999874
No 355
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=81.78 E-value=0.43 Score=42.50 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=18.1
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 345567776 566799999999874
No 356
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=81.68 E-value=14 Score=32.74 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.9
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
...+.+.|++|+|||..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999754
No 357
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=81.63 E-value=0.89 Score=39.65 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=17.5
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.|.||+|+|||+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH
Confidence 46788999999999999974
No 358
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.62 E-value=0.92 Score=36.81 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=14.1
Q ss_pred cEEEEcCCCcHHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~ 27 (401)
-.++.|++|||||+.+.
T Consensus 7 i~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46899999999998643
No 359
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=81.53 E-value=0.47 Score=42.62 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=18.0
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345567776 566799999999874
No 360
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=81.52 E-value=0.44 Score=42.55 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=18.4
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 345667877 466799999999974
No 361
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=81.49 E-value=0.57 Score=38.29 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=16.0
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|.-+.|.||+|||||+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CSCEEEEEECCTTSCTHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 4577788999999999974
No 362
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=81.45 E-value=0.43 Score=42.75 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=18.2
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 345567776 566799999999874
No 363
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=81.43 E-value=0.43 Score=42.85 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=18.1
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHhhhcCCceEEEEECCCCCCCeEee
Confidence 345567877 556799999999874
No 364
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=81.33 E-value=1.8 Score=39.07 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=19.6
Q ss_pred ccccCCccEEEEcCCCcHHHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~~ 26 (401)
-.+..|+.+.+.||+|+|||...
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHH
Confidence 35678999999999999999753
No 365
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=81.32 E-value=0.72 Score=38.66 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.+.||.|+|||+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 366
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=81.29 E-value=0.86 Score=39.98 Aligned_cols=22 Identities=27% Similarity=0.126 Sum_probs=17.4
Q ss_pred cCCccEEEEcCCCcHHHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
..|+.+++.||+|+|||..++.
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHH
Confidence 3567789999999999976443
No 367
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=81.18 E-value=0.68 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=15.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|.-+++.|++|||||+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 567799999999999985
No 368
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.06 E-value=0.77 Score=37.77 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=26.8
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCCceEEEEeec
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRMRQTYLFSAT 161 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 161 (401)
..+.+++++||--.-++......+..++..+......++++..
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtH 191 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4566788888888878877666666665554322224444443
No 369
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=81.03 E-value=0.69 Score=36.80 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.1
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+.+.||+|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 370
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=80.99 E-value=0.76 Score=35.74 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=16.7
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|.-+.+.||.|+|||+.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 35677888999999999973
No 371
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=80.99 E-value=0.47 Score=42.79 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=18.2
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 345567766 666799999999984
No 372
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.93 E-value=0.97 Score=38.45 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=14.4
Q ss_pred cEEEEcCCCcHHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~ 27 (401)
.+++.||+|+|||+.+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998643
No 373
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.87 E-value=0.7 Score=39.72 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.9
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
+.+++.||+|+|||+.
T Consensus 74 ~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred CeEEEECCCcChHHHH
Confidence 3499999999999974
No 374
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=80.85 E-value=0.75 Score=37.26 Aligned_cols=17 Identities=24% Similarity=0.478 Sum_probs=14.7
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
.+-+++.|++|||||+.
T Consensus 18 ~~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SSCEEEECSTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35799999999999985
No 375
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.79 E-value=0.51 Score=43.05 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=18.2
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 131 v~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 131 IQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHCCCceEEEEecCCCCCCeeEe
Confidence 345567777 566799999999974
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.72 E-value=0.79 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=14.4
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
..+++.|++|||||+..
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999853
No 377
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=80.69 E-value=0.5 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=18.2
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 445667877 466699999999874
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=80.60 E-value=0.81 Score=37.04 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.1
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.+..+++.|++|||||+.
T Consensus 19 ~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345689999999999985
No 379
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=80.58 E-value=0.78 Score=42.28 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.8
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
..+++++.||+|+|||..
T Consensus 49 ~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEEcCCCCCHHHH
Confidence 457899999999999975
No 380
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.54 E-value=0.88 Score=40.29 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=14.3
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+-++|.||||||||...
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 45889999999999753
No 381
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.40 E-value=0.85 Score=39.85 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=17.6
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+-+.+.||+|+|||+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 45789999999999999974
No 382
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=80.37 E-value=1.7 Score=40.55 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+..|.-+.+.||+|+|||+..
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHH
Confidence 346778999999999999853
No 383
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.30 E-value=0.71 Score=37.67 Aligned_cols=19 Identities=26% Similarity=-0.025 Sum_probs=15.4
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..|.-+.+.||+|||||+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp -CCEEEEEEESTTSSHHHH
T ss_pred CCcEEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 384
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=80.29 E-value=4.2 Score=39.84 Aligned_cols=70 Identities=11% Similarity=0.016 Sum_probs=47.6
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccE
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKY 124 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~ 124 (401)
.+.++||+||++.-++.+++.|++. ++++..+||+..............+|+|+|. .+.. .+++. +++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~ 476 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASR 476 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcE
Confidence 3567999999999999999888875 5788899985332222222234688999992 1222 24566 666
Q ss_pred EE
Q 015759 125 LV 126 (401)
Q Consensus 125 iI 126 (401)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 385
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.19 E-value=0.45 Score=42.38 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
...++++.||+|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 346799999999999975
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.02 E-value=0.97 Score=40.07 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=14.5
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
..+++.||+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999975
No 387
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=80.00 E-value=2.2 Score=33.52 Aligned_cols=15 Identities=27% Similarity=0.062 Sum_probs=12.8
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
-+.+.|+.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 388
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=79.94 E-value=0.49 Score=42.61 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCceEEEEeecCCCCCcceec
Confidence 344566766 566799999999874
No 389
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=79.87 E-value=0.84 Score=38.52 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.+.||.|+|||+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 390
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=79.84 E-value=0.84 Score=38.00 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.+.||.|+|||+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 391
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=79.84 E-value=3.3 Score=33.88 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=45.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCCC------CCCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDVA------SRGLDIPS 285 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~~------~~Gid~~~ 285 (401)
.+.+++|.++++..+..+++.+... +..+..++|+.+..+....+ . ..+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4568999999999998888887764 66788888887655443322 2 27899999621 23456667
Q ss_pred CCEEEE
Q 015759 286 VDMVIN 291 (401)
Q Consensus 286 ~~~vi~ 291 (401)
++++|.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.68 E-value=0.65 Score=39.32 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=15.9
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
..+..+++.|++|||||+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp SSCEEEEEESCGGGTTHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 3456789999999999975
No 393
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=79.66 E-value=0.42 Score=42.80 Aligned_cols=19 Identities=42% Similarity=0.450 Sum_probs=16.0
Q ss_pred CCcc--EEEEcCCCcHHHHHH
Q 015759 8 AGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~--~ii~a~tGsGKT~~~ 26 (401)
+|.+ ++..|+||||||+++
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 5777 588899999999874
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=79.60 E-value=0.77 Score=37.62 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=13.7
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
.+++.||+|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=79.58 E-value=0.63 Score=36.89 Aligned_cols=19 Identities=21% Similarity=0.034 Sum_probs=11.5
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.-+++.|++|||||+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999853
No 396
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=79.43 E-value=0.87 Score=39.11 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|.-+.+.||.|||||+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 397
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=79.42 E-value=0.6 Score=43.04 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=18.2
Q ss_pred cccccCCcc--EEEEcCCCcHHHHHH
Q 015759 3 LWFCDAGKD--LIGLAQTGSGKTGAF 26 (401)
Q Consensus 3 l~~~~~g~~--~ii~a~tGsGKT~~~ 26 (401)
+..++.|.| ++..|+||||||+++
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 344567776 566799999999974
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=79.34 E-value=0.79 Score=37.56 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.7
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
.+++.||+|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 399
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=79.33 E-value=0.9 Score=38.65 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.+.||+|+|||+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 45788999999999999973
No 400
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=79.31 E-value=0.85 Score=37.83 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.8
Q ss_pred ccCCccEEEEcCCCcHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTG 24 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~ 24 (401)
+..|+-+.+.||.|+|||+
T Consensus 27 i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EETTCEEEEEECTTSCHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 4578889999999999997
No 401
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.28 E-value=4.4 Score=33.47 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=49.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcC----CceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-----CC--CCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLG----QRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----AS--RGLDIP 284 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-----~~--~Gid~~ 284 (401)
.+.+++|.++++..+...++.+++.+ ..+..++|+.+.......+ +..+|+|+|.- +. ..+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 46789999999999999988887754 6788888887655443333 35789999962 11 135666
Q ss_pred CCCEEEE
Q 015759 285 SVDMVIN 291 (401)
Q Consensus 285 ~~~~vi~ 291 (401)
+++++|.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777774
No 402
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.22 E-value=0.89 Score=37.17 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=17.2
Q ss_pred ccCCccEEEEcCCCcHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~ 26 (401)
+..|.-+++.|++|||||+..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 346778999999999999753
No 403
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=79.20 E-value=0.84 Score=38.39 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+-+.+.||.|+|||+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 404
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=79.19 E-value=1 Score=36.64 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=16.9
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..|.-+++.|+.|||||+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHH
Confidence 45778999999999999853
No 405
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=79.19 E-value=4.1 Score=33.80 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=44.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC-----CCCC-CCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD-----VASR-GLDIPS 285 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~-----~~~~-Gid~~~ 285 (401)
.+.+++|.++++..+..+++.+++. +..+..++|+.+... ....+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999998888765 456777777755332 23445556689999994 2222 356667
Q ss_pred CCEEEE
Q 015759 286 VDMVIN 291 (401)
Q Consensus 286 ~~~vi~ 291 (401)
++++|.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 787774
No 406
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=79.13 E-value=0.83 Score=36.73 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.+.-+++.|++|||||+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356789999999999985
No 407
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=79.12 E-value=0.91 Score=35.56 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=14.4
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+.+++.|++|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999853
No 408
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=79.01 E-value=1.3 Score=35.61 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=25.4
Q ss_pred CCCccEEEEcchhhc--cccccHHHHHHHHHhCCCCceEEEEeecC
Q 015759 119 LGTLKYLVLDEADRL--LNDDFEKSLDEILNVIPRMRQTYLFSATM 162 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~--~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 162 (401)
....+++|+||+..+ .+..+...+..++... ..+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 567889999997655 4445666666666532 2244445554
No 409
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=78.89 E-value=2.8 Score=38.62 Aligned_cols=54 Identities=7% Similarity=-0.056 Sum_probs=40.5
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHhCCCCCEEEEC
Q 015759 46 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVAT 103 (401)
Q Consensus 46 ~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T 103 (401)
+.+++|+||++.-++.+++.+.+. ++++..+||+........-.....+|+|+|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC
Confidence 446999999999999999999886 478889998743322222223468999999
No 410
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=78.87 E-value=0.91 Score=37.03 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=16.8
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..+.-+++.|+.|||||+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35778999999999999853
No 411
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.82 E-value=1.5 Score=46.78 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCC
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIP 150 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 150 (401)
+.+.+++|+||+=.-+|..-...+...+..+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~ 601 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAA 601 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHh
Confidence 55778999999998888665666666555443
No 412
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.81 E-value=7 Score=32.64 Aligned_cols=71 Identities=8% Similarity=0.172 Sum_probs=49.9
Q ss_pred CCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-----C-CCCCCCCCC
Q 015759 217 ASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-----A-SRGLDIPSV 286 (401)
Q Consensus 217 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-----~-~~Gid~~~~ 286 (401)
+.++||.+++++.+..+++.++.. +..+..++|+.+.......+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 468999999999999888877664 46677888887665443332 235789999972 1 223567777
Q ss_pred CEEEE
Q 015759 287 DMVIN 291 (401)
Q Consensus 287 ~~vi~ 291 (401)
+++|.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87774
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=78.76 E-value=0.88 Score=37.42 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+..+++.|++|||||+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp GCCEEEEEECTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 414
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.70 E-value=0.82 Score=36.50 Aligned_cols=15 Identities=27% Similarity=0.131 Sum_probs=13.3
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+++.|++|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 415
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=78.62 E-value=1.2 Score=35.07 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=17.4
Q ss_pred cCCccEEEEcCCCcHHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~~ 26 (401)
..|+-+++.|+.|+|||..+
T Consensus 14 v~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELS 33 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHH
Confidence 46889999999999999764
No 416
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.62 E-value=1 Score=40.82 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=14.0
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+-++|.||||+|||..+
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 34788999999999753
No 417
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=78.59 E-value=0.52 Score=38.61 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=18.4
Q ss_pred ccccCCccEEEEcCCCcHHHHH
Q 015759 4 WFCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 4 ~~~~~g~~~ii~a~tGsGKT~~ 25 (401)
..+..|.-+.+.||.|+|||+.
T Consensus 17 ~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 17 DAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp HHHHHCSEEEEECCTTSSTTHH
T ss_pred HhccCCCEEEEECCCCCCHHHH
Confidence 3456788899999999999974
No 418
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=78.54 E-value=0.97 Score=38.38 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+-+.+.||.|+|||+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.49 E-value=0.98 Score=37.89 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|.-+.+.||.|+|||+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 420
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.47 E-value=5.4 Score=36.89 Aligned_cols=69 Identities=12% Similarity=-0.035 Sum_probs=47.9
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHhCCCCCEEEECchHHHHHHhcCCCCCCCCccEE
Q 015759 46 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVATPGRLMDHLTNTKGFSLGTLKYL 125 (401)
Q Consensus 46 ~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T~~~l~~~~~~~~~~~~~~~~~i 125 (401)
..++||.||++.-++++++.|.+. ++.+..++++..............+|+|+|. .+.. .++++. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CEE
Confidence 447999999999999999998775 4778888887654333322345789999992 2232 346666 666
Q ss_pred E
Q 015759 126 V 126 (401)
Q Consensus 126 I 126 (401)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 421
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.45 E-value=1.2 Score=36.44 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
.+++.||+||||++.+
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999864
No 422
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=78.44 E-value=0.93 Score=37.40 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=15.0
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
+..+.+.||+|||||+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999853
No 423
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.37 E-value=0.87 Score=42.56 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.2
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
...++++.||+|+|||..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 4578999999999999753
No 424
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=78.33 E-value=1.9 Score=30.81 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=32.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMS 252 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 252 (401)
...++++||.+-..+...+..|++.|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4568999999988899999999999999999999853
No 425
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=78.30 E-value=1 Score=37.91 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.3
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
++..+.+.||+|||||+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356799999999999974
No 426
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.27 E-value=0.96 Score=34.73 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.7
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 457899999999975
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.25 E-value=1.3 Score=36.83 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+..+++.|++|||||+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 428
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=78.04 E-value=8.4 Score=33.97 Aligned_cols=74 Identities=15% Similarity=0.345 Sum_probs=53.2
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
.+.++||.||++.-+..+++.+++. ++.+..++|+.+...+...+ ....+|+|+|. .+ .. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~----~~--Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VM----SR--GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-TH----HH--HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh----hc--CCCcc
Confidence 5567999999999999999999875 46788899987765544332 34678999993 22 22 24677
Q ss_pred CccEEEEcc
Q 015759 121 TLKYLVLDE 129 (401)
Q Consensus 121 ~~~~iIiDE 129 (401)
.+++||.-+
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 788887643
No 429
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.02 E-value=1 Score=38.16 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|.-+.+.||.|+|||+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 430
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=78.02 E-value=1 Score=38.04 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+-+.+.||.|+|||+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 431
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=77.98 E-value=1 Score=38.45 Aligned_cols=20 Identities=25% Similarity=0.332 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.-+.+.||.|+|||+.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 432
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=77.96 E-value=1 Score=38.49 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|.-+.+.||.|+|||+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45788899999999999973
No 433
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=77.85 E-value=1 Score=37.97 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.-+.+.||.|+|||+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45788899999999999973
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=77.81 E-value=1.1 Score=38.27 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.2
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.-+.+.||.|+|||+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 435
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=77.72 E-value=0.97 Score=42.19 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.9
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
.+.+++.||+|+|||+.
T Consensus 49 p~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLL 65 (476)
T ss_dssp CSEEEEECCTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999975
No 436
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=77.64 E-value=1.1 Score=38.43 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=27.7
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCC-CceEEEEeec
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPR-MRQTYLFSAT 161 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT 161 (401)
+.+.+++++||.-..++......+..++..+.. ....++++..
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 445678888888887887767777777766643 1234444443
No 437
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=77.58 E-value=1.1 Score=38.00 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=15.6
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.|..+.|.||+|||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 567789999999999974
No 438
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=77.50 E-value=1.1 Score=37.99 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.2
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.+.||.|+|||+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp EETTCEEEEECCSSSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 45788899999999999973
No 439
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.45 E-value=1 Score=37.87 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.9
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+..+++.||+|||||+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 440
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=77.40 E-value=1.5 Score=40.47 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=15.9
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.+++.|++|+|||+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5799999999999986543
No 441
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=77.35 E-value=0.96 Score=36.09 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.4
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+.+++.|++|||||+..
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46889999999999853
No 442
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=77.33 E-value=2.2 Score=46.13 Aligned_cols=43 Identities=16% Similarity=0.034 Sum_probs=30.4
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRE 57 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 57 (401)
+..|+.+++.||+|+|||...+..+...+. .+.+++|+.-...
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~---------~G~~vlYI~te~~ 73 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDAEHA 73 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH---------TTCCEEEECTTSC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhh---------CCCceEEEEecCc
Confidence 456899999999999999865554444332 4556888876543
No 443
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.32 E-value=0.9 Score=44.02 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.5
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
++..|+.+++.||+|+|||+.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHH
Confidence 456789999999999999975
No 444
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=77.30 E-value=1.1 Score=38.20 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.2
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|.-+.+.||.|+|||+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45788899999999999973
No 445
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=77.26 E-value=2.4 Score=39.01 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.5
Q ss_pred ccEEEEcCCCcHHHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~~~ 28 (401)
+.++++++.|+|||++..-
T Consensus 101 ~vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5678889999999987554
No 446
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=77.24 E-value=1.1 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.+.||.|+|||+.
T Consensus 47 i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHH
Confidence 45788899999999999973
No 447
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=77.02 E-value=1 Score=38.21 Aligned_cols=18 Identities=22% Similarity=0.019 Sum_probs=15.2
Q ss_pred CccEEEEcCCCcHHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~~ 26 (401)
+.-+++.|++|||||+.+
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 456899999999999853
No 448
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.01 E-value=2.1 Score=47.14 Aligned_cols=48 Identities=17% Similarity=0.003 Sum_probs=34.0
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQIS 63 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 63 (401)
+..|+++++.+|+|+|||..++..+.+.+. .+.+++++.- .++.+++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k---------~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR---------EGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT---------TTCCEEEECT-TSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHH---------cCCeEEEEEc-cccHHHHH
Confidence 568899999999999999876554444432 4566777764 45556666
No 449
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.96 E-value=2 Score=40.74 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=19.8
Q ss_pred cccCCccEEEEcCCCcHHHHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGAFAL 28 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~~~~ 28 (401)
-+..|.-+.+.||+|+|||+....
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHH
Confidence 356789999999999999986444
No 450
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=76.79 E-value=1.1 Score=38.45 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|.-+.+.||.|+|||+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45788899999999999973
No 451
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.79 E-value=1.1 Score=36.22 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.9
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
..+++.|++|||||+.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4588999999999985
No 452
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=76.66 E-value=2 Score=30.13 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=31.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 251 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 251 (401)
+..++++||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 457899999998889999999999999999988875
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=76.66 E-value=1.1 Score=36.42 Aligned_cols=15 Identities=33% Similarity=0.133 Sum_probs=13.2
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+.+.||+|||||++
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 454
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.53 E-value=1.1 Score=34.81 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.3
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+++.|++|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999985
No 455
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=76.52 E-value=1.1 Score=36.37 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=13.3
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+.+.|++|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 578999999999974
No 456
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.31 E-value=3.1 Score=32.78 Aligned_cols=16 Identities=38% Similarity=0.241 Sum_probs=13.3
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
.-+++.|+.|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3478899999999974
No 457
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=76.02 E-value=1.1 Score=36.74 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.7
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 458
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.90 E-value=9.4 Score=32.18 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=51.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC------CC-CCCCCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQRAIPISGHMSQSKRLGALNKFKAGECNILICTD------VA-SRGLDIP 284 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~------~~-~~Gid~~ 284 (401)
.+.+++|.++++.-+...++.+++. +..+..+.|+.........+ ..+ .+|+|+|+ +. ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999988888774 55677888887765543333 223 78999995 11 2246777
Q ss_pred CCCEEEE
Q 015759 285 SVDMVIN 291 (401)
Q Consensus 285 ~~~~vi~ 291 (401)
++.++|.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888774
No 459
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=75.87 E-value=1.6 Score=34.71 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=24.2
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHh
Q 015759 12 LIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEAL 69 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~ 69 (401)
++|.|++|||||..+. .+.. .+..++++......-.++.+++...
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~--------~~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIG--------DAPQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHC--------SCSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHH-----HHHh--------cCCCeEEEecCCCCCHHHHHHHHHH
Confidence 6899999999997432 2221 1224788887655444444444443
No 460
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=75.64 E-value=2.2 Score=38.75 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=18.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~ 27 (401)
+..|.-+.|.||+|+|||....
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHH
Confidence 4568889999999999997543
No 461
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.58 E-value=1.2 Score=35.36 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=12.9
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
-.+|.||+|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 567899999999974
No 462
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=75.57 E-value=2.8 Score=28.95 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=30.9
Q ss_pred CCEEEEecchHHHHHHHHHHHhcCCceEeecCCCC
Q 015759 218 SSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMS 252 (401)
Q Consensus 218 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 252 (401)
.++++||.+-..+...+..|.+.|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999999888888863
No 463
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=75.54 E-value=1.2 Score=35.87 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=13.2
Q ss_pred cEEEEcCCCcHHHHH
Q 015759 11 DLIGLAQTGSGKTGA 25 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~ 25 (401)
.+++.|++|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478999999999985
No 464
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=75.49 E-value=0.86 Score=51.63 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.4
Q ss_pred cccCCccEEEEcCCCcHHHHH
Q 015759 5 FCDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 5 ~~~~g~~~ii~a~tGsGKT~~ 25 (401)
++..|++++++||||+|||..
T Consensus 1263 ~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1263 LLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHHTCEEEEECSTTSSHHHH
T ss_pred HHHCCCeEEEECCCCCCHHHH
Confidence 456789999999999999975
No 465
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=75.39 E-value=25 Score=32.83 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=49.7
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCCC
Q 015759 46 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLGT 121 (401)
Q Consensus 46 ~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~~ 121 (401)
+..+++.+. ..-+..+.+.+.+.+ .++..++|+.+...+...+ ....+|+|+|+..+-. .+++..
T Consensus 348 ~~~~ivf~~-~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~------GiDip~ 416 (510)
T 2oca_A 348 ENAFVMFKH-VSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST------GISVKN 416 (510)
T ss_dssp CEEEEEESS-HHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH------SCCCCS
T ss_pred CCeEEEEec-HHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc------cccccc
Confidence 344455554 655666777776643 4788899988765443322 3467899999776633 357788
Q ss_pred ccEEEEcchh
Q 015759 122 LKYLVLDEAD 131 (401)
Q Consensus 122 ~~~iIiDE~h 131 (401)
+++||+....
T Consensus 417 v~~vi~~~~~ 426 (510)
T 2oca_A 417 LHHVVLAHGV 426 (510)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEEeCCC
Confidence 9999988777
No 466
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=75.23 E-value=1.5 Score=34.51 Aligned_cols=17 Identities=29% Similarity=0.177 Sum_probs=13.5
Q ss_pred ccEEEEcCCCcHHHHHH
Q 015759 10 KDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~~ 26 (401)
+-+.+.|++|||||+..
T Consensus 3 ~~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI 19 (171)
T ss_dssp CEEEEEESCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678899999999753
No 467
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.21 E-value=6.3 Score=31.55 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=18.2
Q ss_pred CCEEEECchHHHHHHhcCCCCCCCCccEEEEcchh
Q 015759 97 PHIVVATPGRLMDHLTNTKGFSLGTLKYLVLDEAD 131 (401)
Q Consensus 97 ~~Iii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~h 131 (401)
.+++-+.++.+...+... ...+++||+|=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l----~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD----LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH----TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh----cCCCCEEEEECCC
Confidence 345555556665555442 2357899999554
No 468
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=75.20 E-value=1.2 Score=40.10 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.4
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999753
No 469
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=74.84 E-value=1.9 Score=30.38 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=31.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 251 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 251 (401)
+..++++||.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456799999998889999999999999999988875
No 470
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=74.67 E-value=1.4 Score=38.18 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.4
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+.+|+-+.+.||.|+|||+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45788899999999999973
No 471
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=74.48 E-value=11 Score=35.45 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=44.6
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEc--------CCChHHHHHH---hC--CCCCEEEECchHHHHHH
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVG--------GVDMMQQTLA---LG--KRPHIVVATPGRLMDHL 111 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~--------~~~~~~~~~~---~~--~~~~Iii~T~~~l~~~~ 111 (401)
...++||.|+++.-+..+.+.|...+....+.+..++| +.+...+... +. ...+|+|+|.
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------- 460 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------- 460 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC-------
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc-------
Confidence 45689999999999999999998865322344444444 4333332222 22 3568999992
Q ss_pred hcCCCCCCCCccEEEE
Q 015759 112 TNTKGFSLGTLKYLVL 127 (401)
Q Consensus 112 ~~~~~~~~~~~~~iIi 127 (401)
.-...+++..+++||.
T Consensus 461 ~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 461 VADEGIDIAECNLVIL 476 (555)
T ss_dssp CTTCCEETTSCSEEEE
T ss_pred hhhcCCccccCCEEEE
Confidence 1123467778888775
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.43 E-value=2.8 Score=39.78 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=31.0
Q ss_pred ccCCccEEEEcCCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFE 67 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~ 67 (401)
+..|.-+++.||+|+|||..... +...... .+.+++++++... ..|+...+.
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~-l~g~~~~--------~G~~vi~~~~ee~-~~~l~~~~~ 329 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSR-FVENACA--------NKERAILFAYEES-RAQLLRNAY 329 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHH-HHHHHHT--------TTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHH-HHHHHHh--------CCCCEEEEEEeCC-HHHHHHHHH
Confidence 56788899999999999975332 2222211 2335677766433 245554443
No 473
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=74.32 E-value=16 Score=36.40 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=53.9
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhc-------cCCCceEEEEEcCCChHHHHHHhCC---------CCCEEEECchHHH
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALG-------SGISLRCAVLVGGVDMMQQTLALGK---------RPHIVVATPGRLM 108 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~Iii~T~~~l~ 108 (401)
....+||.+|++.-++++++.+.+.. ...++.+..++|+.+...+...+.. ...|+|+|.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~---- 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN---- 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc----
Confidence 45689999999999999999887521 2246889999999887766654432 457999993
Q ss_pred HHHhcCCCCCCCCccEEEE
Q 015759 109 DHLTNTKGFSLGTLKYLVL 127 (401)
Q Consensus 109 ~~~~~~~~~~~~~~~~iIi 127 (401)
.+.. .+++..+++||-
T Consensus 378 -iae~--GidIp~v~~VId 393 (773)
T 2xau_A 378 -IAET--SLTIDGIVYVVD 393 (773)
T ss_dssp -HHHH--TCCCTTEEEEEE
T ss_pred -HHHh--CcCcCCeEEEEe
Confidence 2222 246777776663
No 474
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=74.30 E-value=1.4 Score=37.02 Aligned_cols=19 Identities=21% Similarity=-0.078 Sum_probs=15.8
Q ss_pred cCCccEEEEcCCCcHHHHH
Q 015759 7 DAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 7 ~~g~~~ii~a~tGsGKT~~ 25 (401)
.+|.-+-+.||.|||||+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp CCSEEEEEECSTTSSHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 4566688999999999975
No 475
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.21 E-value=8.9 Score=39.80 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=56.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhc----CC----ceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-CCCCCC-CCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNL----GQ----RAIPISGHMSQSKRLGALNKFKAGECNILICTDV-ASRGLD-IPS 285 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-~~~Gid-~~~ 285 (401)
.+.+++|.++++.-+..+++.+++. +. .+..++|+.+..++....+.+.+ .+|+|+|+- +..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 5678999999999998888888754 45 78899999999888777777776 899999972 111111 446
Q ss_pred CCEEEE
Q 015759 286 VDMVIN 291 (401)
Q Consensus 286 ~~~vi~ 291 (401)
++++|.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 476
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=73.89 E-value=1.4 Score=35.13 Aligned_cols=16 Identities=31% Similarity=0.129 Sum_probs=13.4
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999853
No 477
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=73.85 E-value=1.4 Score=35.23 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=13.0
Q ss_pred EEEEcCCCcHHHHHH
Q 015759 12 LIGLAQTGSGKTGAF 26 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~ 26 (401)
+++.|+.|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 478
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=73.63 E-value=1.4 Score=36.35 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=13.6
Q ss_pred cEEEEcCCCcHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAF 26 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~ 26 (401)
.+++.|++|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 479
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=73.36 E-value=2.3 Score=30.20 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=30.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCceEeecCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHM 251 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 251 (401)
+..++++||.+-..+...+..|.+.|+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456799999998888899999999999988887774
No 480
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=73.33 E-value=1.7 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.122 Sum_probs=17.2
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
...|.-+++.||.|+|||+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHH
Confidence 44778899999999999985
No 481
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=72.71 E-value=1.6 Score=41.05 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.2
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
+.+++.||+|+|||+.
T Consensus 65 ~GvLL~GppGtGKTtL 80 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHL 80 (499)
T ss_dssp SEEEEECSSSSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4599999999999974
No 482
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.70 E-value=1.4 Score=43.90 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.2
Q ss_pred CCccEEEEcCCCcHHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGAF 26 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~~ 26 (401)
.+.++++.||+|+|||..+
T Consensus 200 ~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSCEEEEESCTTTTTHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 4568999999999999753
No 483
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=72.67 E-value=1.5 Score=35.44 Aligned_cols=18 Identities=28% Similarity=-0.051 Sum_probs=15.1
Q ss_pred CCccEEEEcCCCcHHHHH
Q 015759 8 AGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 8 ~g~~~ii~a~tGsGKT~~ 25 (401)
.+.-+.+.|++|||||+.
T Consensus 21 ~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SSEEEEEEECTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999975
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=72.40 E-value=2.3 Score=38.37 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=17.2
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|+-+++.||+|+|||+.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45778899999999999974
No 485
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=72.38 E-value=1.6 Score=35.20 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=13.8
Q ss_pred ccEEEEcCCCcHHHHH
Q 015759 10 KDLIGLAQTGSGKTGA 25 (401)
Q Consensus 10 ~~~ii~a~tGsGKT~~ 25 (401)
..+.+.|++|||||++
T Consensus 9 ~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999985
No 486
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=72.28 E-value=3.6 Score=29.15 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=31.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhcCCc-eEeecCCC
Q 015759 216 SASSTMVFTRTCDATRLLALMLRNLGQR-AIPISGHM 251 (401)
Q Consensus 216 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 251 (401)
...++++||.+-..+...+..|...|+. +..+.|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 4568999999988899999999999995 88888875
No 487
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=72.26 E-value=1.7 Score=36.96 Aligned_cols=19 Identities=42% Similarity=0.622 Sum_probs=16.3
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+. |.-+.+.||.|+|||+.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTL 46 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTL 46 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHH
T ss_pred EC-CEEEEEECCCCCCHHHH
Confidence 45 88899999999999973
No 488
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=71.97 E-value=1.7 Score=38.07 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=16.8
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
...|.-+.|.||+|||||+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL 106 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTT 106 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEECCCCchHHHH
Confidence 45677788999999999974
No 489
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=71.69 E-value=1.7 Score=35.17 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=16.7
Q ss_pred ccCCccEEEEcCCCcHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~ 25 (401)
+..|..+.+.|++|+|||..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTL 42 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSA 42 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 34677899999999999973
No 490
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=71.64 E-value=5.9 Score=36.72 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=39.9
Q ss_pred ceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHhCCCCCEEEEC
Q 015759 46 AFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLALGKRPHIVVAT 103 (401)
Q Consensus 46 ~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~Iii~T 103 (401)
+.++||.||++.-++.+++.|++. ++.+..+++...............+|+|+|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEEC
Confidence 457999999999999999999876 478888888643322222223467899999
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=71.60 E-value=2.7 Score=34.09 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=16.4
Q ss_pred cEEEEcCCCcHHHHHHHHHHHHHHHH
Q 015759 11 DLIGLAQTGSGKTGAFALPILQALLE 36 (401)
Q Consensus 11 ~~ii~a~tGsGKT~~~~~~~~~~~~~ 36 (401)
-.+|.||+|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 457889999999975 234444443
No 492
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=71.54 E-value=2.3 Score=37.89 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=18.2
Q ss_pred ccCCccEEEEcCCCcHHHHHHH
Q 015759 6 CDAGKDLIGLAQTGSGKTGAFA 27 (401)
Q Consensus 6 ~~~g~~~ii~a~tGsGKT~~~~ 27 (401)
+..|+-+.+.||+|+|||....
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 4577889999999999997543
No 493
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.44 E-value=1.8 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.5
Q ss_pred CccEEEEcCCCcHHHHH
Q 015759 9 GKDLIGLAQTGSGKTGA 25 (401)
Q Consensus 9 g~~~ii~a~tGsGKT~~ 25 (401)
+..+.+.|++|||||++
T Consensus 4 ~~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTV 20 (218)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688999999999985
No 494
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.28 E-value=3.3 Score=37.52 Aligned_cols=73 Identities=12% Similarity=0.222 Sum_probs=45.2
Q ss_pred CceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh----CCCCCEEEECchHHHHHHhcCCCCCCC
Q 015759 45 PAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL----GKRPHIVVATPGRLMDHLTNTKGFSLG 120 (401)
Q Consensus 45 ~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~Iii~T~~~l~~~~~~~~~~~~~ 120 (401)
...++||.++++.-++.+++.+.+. ++.+..++|+.+...+...+ ....+|+|+|.- -...+++.
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-------~~~Gidip 347 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL-------LARGIDVQ 347 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS-------CC--CCGG
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc-------cccCCCcc
Confidence 4457999999999999998888764 46788888887655443322 235789999931 12235667
Q ss_pred CccEEEEc
Q 015759 121 TLKYLVLD 128 (401)
Q Consensus 121 ~~~~iIiD 128 (401)
.+++||.-
T Consensus 348 ~v~~Vi~~ 355 (414)
T 3eiq_A 348 QVSLVINY 355 (414)
T ss_dssp GCSCEEES
T ss_pred CCCEEEEe
Confidence 77777753
No 495
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=71.17 E-value=2.1 Score=38.11 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=26.9
Q ss_pred CCCccEEEEcchhhccccccHHHHHHHHHhCCCC-ceEEEEeec
Q 015759 119 LGTLKYLVLDEADRLLNDDFEKSLDEILNVIPRM-RQTYLFSAT 161 (401)
Q Consensus 119 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~-~~~i~~SAT 161 (401)
..+.+++++||-=.-++......+..++..+.+. ...++++..
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTH 186 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITH 186 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4567899999988878876666666665554321 224444444
No 496
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=71.16 E-value=1.9 Score=38.81 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=0.0
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHH
Q 015759 12 LIGLAQTGSGKTGAFALPILQAL 34 (401)
Q Consensus 12 ~ii~a~tGsGKT~~~~~~~~~~~ 34 (401)
.++.||||+|||. +++++
T Consensus 28 ~vi~G~NGaGKT~-----ileAI 45 (371)
T 3auy_A 28 VAIIGENGSGKSS-----IFEAV 45 (371)
T ss_dssp EEEEECTTSSHHH-----HHHHH
T ss_pred EEEECCCCCCHHH-----HHHHH
No 497
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=70.93 E-value=13 Score=37.12 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=53.1
Q ss_pred HhcCCCCEEEEecchHHHHHHHHHHHh----cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcCC-C----------
Q 015759 213 TEVSASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTDV-A---------- 277 (401)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~~-~---------- 277 (401)
....+.+++|.++|+.-|...++.+.. .|+.+..+.|+++..+|.... .++|+++|+- +
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 445677899999999988877766644 589999999999987765543 3689999971 1
Q ss_pred --CCCCCCCCCCEEEE
Q 015759 278 --SRGLDIPSVDMVIN 291 (401)
Q Consensus 278 --~~Gid~~~~~~vi~ 291 (401)
...+++..++++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 12356667777664
No 498
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=70.43 E-value=29 Score=29.32 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhhcCCCCceeEEEEcCcHHHHHHHHHHHHHhccCCCceEEEEEcCCChHHHHHHh---
Q 015759 17 QTGSGKTGAFALPILQALLEIAENQRTVPAFFACVLSPTRELAIQISEQFEALGSGISLRCAVLVGGVDMMQQTLAL--- 93 (401)
Q Consensus 17 ~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~--- 93 (401)
...+||... +.-++..+.. .+.++||.+.+...+..+.+.+.... ++.+..++|+.+...+...+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~--------~~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F 159 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD--------EGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKF 159 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH--------TTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh--------CCCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHh
Confidence 346788764 3334444432 45679999999999888888887631 35677889988765443332
Q ss_pred CC--CCCE-EEECchHHHHHHhcCCCCCCCCccEEEEcch
Q 015759 94 GK--RPHI-VVATPGRLMDHLTNTKGFSLGTLKYLVLDEA 130 (401)
Q Consensus 94 ~~--~~~I-ii~T~~~l~~~~~~~~~~~~~~~~~iIiDE~ 130 (401)
.. ...| +++| .. ....+++...+.||+=+.
T Consensus 160 ~~~~~~~v~L~st-~~------~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 160 QNNPSVKFIVLSV-KA------GGFGINLTSANRVIHFDR 192 (271)
T ss_dssp HHCTTCCEEEEEC-CT------TCCCCCCTTCSEEEECSC
T ss_pred cCCCCCCEEEEeh-hh------hcCCcCcccCCEEEEECC
Confidence 11 3454 4555 22 223456777777776433
No 499
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=70.00 E-value=25 Score=28.10 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=80.1
Q ss_pred CCCEEEEecchHHHHHHHHHHHhcCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC----CCCCCCCCCCCCEEEEe
Q 015759 217 ASSTMVFTRTCDATRLLALMLRNLGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD----VASRGLDIPSVDMVINY 292 (401)
Q Consensus 217 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~----~~~~Gid~~~~~~vi~~ 292 (401)
..+++++++..+..+.+.+...+.+..+....+++... ....+.+ +..++|+||-. .+..-+++| + .
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~--v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP---V---V 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRA--SKIAFGL-QDEVDAIISRGATSDYIKKSVSIP---S---I 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHH--HHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC---E---E
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHH--HHHHHHh-cCCCeEEEECChHHHHHHHhCCCC---E---E
Confidence 35678888888888877777777677777777776433 3344445 56678999854 344434444 2 3
Q ss_pred cCCCChhHHHHHhhhcccCCCCceEEEEeccccHHHHHHHHHHhCCCCCCCCCC-HHHHHHHHH
Q 015759 293 DIPTNSKDYIHRVGRTARAGRTGVAISLVNQYELEWYLQIEKLIGKKLPEFPAE-EEEVLLLLE 355 (401)
Q Consensus 293 ~~p~s~~~~~Q~~GR~~R~g~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 355 (401)
+.+.|..++++.+-++-+.+. ..-++-.+.-...+..+.+.++..+...... .++....+.
T Consensus 75 ~I~~s~~Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~ 136 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLIS 136 (196)
T ss_dssp EECCCHHHHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHH
T ss_pred EEcCCHhHHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHH
Confidence 556888999999888876553 3333333333445677888888877655443 333433333
No 500
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=69.93 E-value=12 Score=37.22 Aligned_cols=57 Identities=18% Similarity=0.019 Sum_probs=44.1
Q ss_pred HhcCCCCEEEEecchHHHHHHHHHHHh----cCCceEeecCCCCHHHHHHHHhhccCCCceEEEEcC
Q 015759 213 TEVSASSTMVFTRTCDATRLLALMLRN----LGQRAIPISGHMSQSKRLGALNKFKAGECNILICTD 275 (401)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vLv~T~ 275 (401)
....+.+++|.++|+.-|...++.+.. .|+.+..+.|+++...|.... .++|+|+|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 344677899999999988777666544 589999999999887655433 378999997
Done!