Query 015760
Match_columns 401
No_of_seqs 174 out of 243
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb7_A Telomere-binding protei 100.0 2.2E-78 7.7E-83 620.5 28.3 348 3-400 31-445 (495)
2 1xjv_A Protection of telomeres 100.0 1.5E-59 5E-64 455.8 31.5 271 6-300 2-285 (294)
3 1qzg_A Protection of telomeres 100.0 8.7E-34 3E-38 253.0 17.1 142 6-148 25-174 (187)
4 4hik_A Protection of telomeres 100.0 9.5E-29 3.3E-33 212.4 15.0 124 155-300 3-135 (143)
5 4gop_C Putative uncharacterize 99.2 4E-09 1.4E-13 107.3 24.2 317 10-400 3-371 (444)
6 2k50_A Replication factor A re 98.5 4.1E-07 1.4E-11 75.1 9.6 93 5-103 2-99 (115)
7 1jmc_A Protein (replication pr 98.5 6.1E-06 2.1E-10 76.9 18.3 217 8-299 6-236 (246)
8 2k75_A Uncharacterized protein 98.4 2E-06 7E-11 70.0 10.1 88 8-108 1-91 (106)
9 1jmc_A Protein (replication pr 98.2 5.4E-06 1.8E-10 77.3 10.7 92 5-101 121-218 (246)
10 4gop_C Putative uncharacterize 98.2 7.3E-06 2.5E-10 83.2 11.9 89 5-95 116-212 (444)
11 1o7i_A SSB, SSO2364, single st 98.2 1.5E-05 5E-10 66.2 11.5 89 10-108 2-94 (119)
12 2kbn_A Conserved protein; nucl 97.9 0.00016 5.5E-09 59.0 11.6 84 10-103 5-88 (109)
13 3dm3_A Replication factor A; p 97.8 0.00013 4.5E-09 59.1 9.5 84 9-101 4-92 (105)
14 3e0e_A Replication protein A; 97.6 0.00036 1.2E-08 55.6 9.8 83 11-102 3-89 (97)
15 2k75_A Uncharacterized protein 97.5 0.0013 4.5E-08 53.2 12.0 94 159-293 4-98 (106)
16 2k50_A Replication factor A re 97.3 0.0017 5.7E-08 53.1 10.3 92 157-290 7-107 (115)
17 2kbn_A Conserved protein; nucl 97.3 0.0057 1.9E-07 49.6 13.3 89 159-291 6-97 (109)
18 1wjj_A Hypothetical protein F2 97.3 0.00091 3.1E-08 57.2 8.5 90 5-103 11-114 (145)
19 1o7i_A SSB, SSO2364, single st 97.2 0.0033 1.1E-07 51.8 11.5 88 159-290 3-98 (119)
20 1wjj_A Hypothetical protein F2 96.9 0.018 6.2E-07 49.1 13.4 50 238-291 74-123 (145)
21 3dm3_A Replication factor A; p 95.9 0.12 4.2E-06 41.4 11.8 85 156-286 4-98 (105)
22 3e0e_A Replication protein A; 95.4 0.17 5.7E-06 39.9 10.6 92 159-286 3-94 (97)
23 1xjv_A Protection of telomeres 95.0 0.27 9.3E-06 46.6 12.9 85 156-281 5-94 (294)
24 1ynx_A Replication factor-A pr 94.8 0.2 6.7E-06 40.7 9.8 101 157-291 4-112 (114)
25 3u4z_A Telomerase-associated p 94.5 0.38 1.3E-05 36.2 9.6 86 13-107 4-90 (109)
26 1qzg_A Protection of telomeres 94.1 0.88 3E-05 40.2 12.9 90 161-286 36-132 (187)
27 1ynx_A Replication factor-A pr 94.0 0.018 6E-07 47.0 1.7 81 9-95 3-88 (114)
28 1l1o_C Replication protein A 7 93.5 0.22 7.4E-06 43.9 8.0 71 330-400 6-106 (181)
29 1miu_A BRCA2, breast cancer ty 93.4 0.86 3E-05 48.2 13.4 153 44-271 511-671 (738)
30 4gop_B Putative uncharacterize 93.2 0.72 2.5E-05 38.4 10.3 69 22-101 37-109 (136)
31 3kdf_D Replication protein A 3 92.7 1.1 3.7E-05 37.1 10.7 70 22-101 32-104 (132)
32 3u58_A Tetrahymena TEB1 AB; te 91.7 1.3 4.5E-05 36.9 9.7 85 11-103 120-205 (213)
33 3ebe_A Protein MCM10 homolog; 91.0 0.2 6.9E-06 44.9 4.5 82 7-90 35-123 (200)
34 4hik_A Protection of telomeres 90.5 0.51 1.8E-05 39.9 6.3 77 9-94 4-101 (143)
35 2pi2_A Replication protein A 3 89.6 2.5 8.5E-05 39.4 11.0 82 10-101 48-144 (270)
36 1jb7_A Telomere-binding protei 89.2 3.9 0.00013 41.6 12.8 107 156-292 37-153 (495)
37 3u50_C Telomerase-associated p 83.8 0.3 1E-05 42.7 1.0 31 370-400 72-102 (172)
38 4gop_B Putative uncharacterize 72.5 38 0.0013 27.6 12.0 88 166-299 35-125 (136)
39 3r8s_P 50S ribosomal protein L 71.5 8.5 0.00029 31.0 6.0 41 70-111 14-62 (114)
40 3kdf_D Replication protein A 3 70.2 42 0.0014 27.2 12.7 87 168-299 32-120 (132)
41 2pi2_A Replication protein A 3 70.2 66 0.0022 29.5 12.9 87 168-299 72-160 (270)
42 2ftc_K 39S ribosomal protein L 68.9 8.3 0.00028 30.3 5.3 40 72-112 1-47 (98)
43 3kf6_A Protein STN1; OB fold, 64.9 9.7 0.00033 32.5 5.5 71 22-101 48-121 (159)
44 3v2d_T 50S ribosomal protein L 61.4 16 0.00056 30.6 6.0 40 70-110 17-64 (146)
45 1miu_A BRCA2, breast cancer ty 60.1 23 0.0008 37.5 8.3 72 11-93 597-672 (738)
46 3f2b_A DNA-directed DNA polyme 49.6 24 0.00082 39.1 6.6 85 9-99 6-94 (1041)
47 3mxn_A RECQ-mediated genome in 46.4 27 0.00093 29.7 5.1 62 326-393 18-80 (157)
48 2hpi_A DNA polymerase III alph 43.5 16 0.00055 41.1 4.1 75 11-90 1027-1106(1220)
49 2zjr_M 50S ribosomal protein L 37.9 23 0.00078 30.3 3.3 41 70-111 22-70 (166)
50 3f2b_A DNA-directed DNA polyme 34.0 93 0.0032 34.4 8.1 40 159-198 8-51 (1041)
51 3afp_A Single-stranded DNA-bin 27.3 65 0.0022 27.4 4.5 73 22-94 5-90 (168)
52 3u4z_A Telomerase-associated p 25.7 1.1E+02 0.0038 22.7 4.8 39 160-200 3-43 (109)
53 3frn_A Flagellar protein FLGA; 23.5 1.7E+02 0.0057 27.2 6.7 66 221-289 196-268 (278)
54 1yn8_A NBP2, NAP1-binding prot 21.5 1.8E+02 0.0062 19.1 5.3 25 254-281 19-43 (59)
55 3im6_A Cardiac Ca2+ release ch 20.6 3.2E+02 0.011 24.3 7.6 67 44-111 143-216 (217)
56 3koj_A Uncharacterized protein 20.3 73 0.0025 25.1 3.2 34 238-283 54-87 (108)
57 2lcs_A NAP1-binding protein 2; 20.1 2.3E+02 0.008 19.9 5.8 25 253-280 22-46 (73)
No 1
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=100.00 E-value=2.2e-78 Score=620.53 Aligned_cols=348 Identities=19% Similarity=0.250 Sum_probs=300.7
Q ss_pred CCCCCcceeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 015760 3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL 72 (401)
Q Consensus 3 ~~~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~-----~gl-----~v~iF~~~~e~L 72 (401)
+..++|+|++|++|....++.|||||||+|+++|++|+|+||+|+|+|+|+|+.. .|| +|+||++++++|
T Consensus 31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L 110 (495)
T 1jb7_A 31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL 110 (495)
T ss_dssp -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence 4578999999999987789999999999999999999999999999999999982 389 999999999999
Q ss_pred CCCCCCCCEEEEeeEEEEEecCeeEEEeecCc-eEEEEEeCCC------------CCCccccccCCCCCCCCHHHHHHHH
Q 015760 73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN 139 (401)
Q Consensus 73 P~v~~~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~lf~~~~------------~~~~~P~~~s~~~~~~~~~e~~~v~ 139 (401)
|.|.++||||+|||++|+.|+|+++++++.++ |+||||++.. +.++.||+.|+.+|+++++|++++.
T Consensus 111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~ 190 (495)
T 1jb7_A 111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ 190 (495)
T ss_dssp CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence 99988999999999999999999999999876 8999999987 7789999988667999999999999
Q ss_pred HHHHhhhcCccc---CCCcccccccc-cccCCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCC
Q 015760 140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL 215 (401)
Q Consensus 140 ~Lr~W~~~~~~~---~~~~~f~~~L~-di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~ 215 (401)
.||+|+.++... .++++| .+|+ ||++++||||+||||+++ ..++++++|||||||++|+++
T Consensus 191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~------------- 255 (495)
T 1jb7_A 191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT------------- 255 (495)
T ss_dssp HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence 999999987653 356678 8999 999999999999999999 558899999999999998864
Q ss_pred CccccCCCCcHHhhhcCCCC--ccEEEEEecCcchhhh-cccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceE------
Q 015760 216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------ 286 (401)
Q Consensus 216 ~~~~e~~~l~~~~~~~~p~~--G~~l~V~~~~~~~~~~-~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~------ 286 (401)
.+++|++|.+ |++++|..++..+... .+.++.|+| +|+. ++.++++++
T Consensus 256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~ 312 (495)
T 1jb7_A 256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK 312 (495)
T ss_dssp ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence 2346889999 9999998886655433 577889999 5777 566677887
Q ss_pred EccCCChHHHHHhhhhhcCCCCCCCCcCCCCCCcccccc--cCCCccccHHHHhcC----CCCCce--EEEEEEEEEeeC
Q 015760 287 LFSDNDNVVWDYMRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVSIHP 358 (401)
Q Consensus 287 ~l~~~d~~v~~l~r~r~~~~~~~~p~~~~p~~~~~t~~~--~~~~p~ttL~dIL~~----~~~~~k--fr~~VRVv~~~P 358 (401)
+++++ +.+.. + +|+++.++++.+|+++ |+++|+|||||||++ +++++| |||+||||+|||
T Consensus 313 ~l~~~---~~~~~--~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~~P 380 (495)
T 1jb7_A 313 IQDDH---SVEVA--S-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKIEP 380 (495)
T ss_dssp SCCCC---HHHHH--H-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEEES
T ss_pred ccchh---hhhhh--h-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEecC
Confidence 77665 33321 2 4666777778899988 999999999999987 778888 999999999999
Q ss_pred CCccccccC-----------CC-----ceEEEEEEEEeCCC-------ceEEEEEeccccccccc
Q 015760 359 FQAEHYSSP-----------NG-----SSEYTMKLTLEDPT-------ARIHALLCGKEWVRFQL 400 (401)
Q Consensus 359 ~~~~df~~~-----------~g-----~~~~~~~L~leD~t-------~~i~~~v~~~da~~f~~ 400 (401)
+++||||++ .| +++|||||||||+| |||||||||+||+.||+
T Consensus 381 ~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~ 445 (495)
T 1jb7_A 381 SDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN 445 (495)
T ss_dssp SSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS
T ss_pred CCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC
Confidence 999999943 23 67999999999999 99999999998888884
No 2
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=100.00 E-value=1.5e-59 Score=455.79 Aligned_cols=271 Identities=23% Similarity=0.354 Sum_probs=234.3
Q ss_pred CCcceeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 015760 6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (401)
Q Consensus 6 ~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~ 85 (401)
++|+|++|+++ +.++.|||||||+|+++|++|+|+||+|||+|+|+|.. ||+|+||+++++.||.+.++||||+||
T Consensus 2 ~~y~y~~l~~l--~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~--gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQL--KGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV--KLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGC--CSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC--EEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHh--hCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC--CEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 68999999988 46889999999999999999999999999999999984 699999999999999999999999999
Q ss_pred eEEEEEecCeeEEEeecCceEEEEEeCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccccc
Q 015760 86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS 165 (401)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~L~di~ 165 (401)
|++|+.|+|+++++++.+++ |++|+|..+.++.|+++++. |+++++|++++..||+|+.++..... +| ++|+||+
T Consensus 78 ~vki~~~~g~~~~v~~~~~s-~~~f~g~~~~~~~p~~~~~~-~~~~~~e~~~~~~Lr~w~~~~~~~~~--~~-~~L~di~ 152 (294)
T 1xjv_A 78 RLKIQVYKKETQGITSSGFA-SLTFEGTLGAPIIPRTSSKY-FNFTTEDHKMVEALRVWASTHMSPSW--TL-LKLCDVQ 152 (294)
T ss_dssp EEEEEEETTEEEEEEEEEEE-EEEECCSTTCCCCCBCSCSS-CCCCHHHHHHHHHHHHHHHHHCC-----CC-CCGGGCC
T ss_pred EEEEEEECCeEEEEccCCeE-EEEECCCCCCCcCCcccCCC-cCCCHHHHHHHHHHHHHHHhccCCCC--ce-eEHHHcc
Confidence 99999999999999998764 55899999888999877765 99999999999999999988765433 58 8999999
Q ss_pred CCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCCcc-EEEEEec
Q 015760 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGT-VLRVSTD 244 (401)
Q Consensus 166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~G~-~l~V~~~ 244 (401)
+++||||+||||+++ ..++++++|||||||+||++++++..++++. +++.+.. .. .|. .++|++|
T Consensus 153 ~~~f~DLv~qVv~v~-~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~-------~gd~~~~--~~----~~~lt~~V~~~ 218 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKA-EVDGASFLLKVWDGTRTPFPSWRVLIQDLVL-------EGDLSHI--HR----LQNLTIDILVY 218 (294)
T ss_dssp SSCEEEEEEEEEEEE-ECSSSEEEEEEECSSCCSSCBCCCCCCSSCC-------EECHHHH--HH----HGGGSEEEEEE
T ss_pred cCCeeeEEEEEEEEE-ecCCCeEEEEEECCCCCCCCccccccccccc-------cCccccc--cc----ccCeeEEEEEE
Confidence 999999999999999 5578999999999999999999886655321 2221111 01 244 5899999
Q ss_pred CcchhhhcccCCCCCEEEEeeeEEEEe--------CcEEEEEeecCc----ceEEccCCChHHHHHhh
Q 015760 245 RSYENFGRYFTATGKWVRIRNMSCQVS--------SGMWHGLLQSSS----KIRLFSDNDNVVWDYMR 300 (401)
Q Consensus 245 ~~~~~~~~~~~k~g~wv~l~Nv~~k~~--------~G~leG~l~~~s----~i~~l~~~d~~v~~l~r 300 (401)
+.|+.++ +.+|+||||+|+||++|++ +|.|||.||+++ ||++++++++++++++|
T Consensus 219 d~h~~~~-~~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~ 285 (294)
T 1xjv_A 219 DNHVHVA-RSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKK 285 (294)
T ss_dssp TTHHHHH-HHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHH
T ss_pred cchhHHH-hcCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHH
Confidence 9888764 4899999999999999997 789999999985 59999999999887765
No 3
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=100.00 E-value=8.7e-34 Score=253.04 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=123.7
Q ss_pred CCcceeeHHhhhh--ccCCEEEEEEEEEEcCCceec-CCC-ceEEEEEEEeCCCC--CCCeEEEEecCCCCCCCCCCCCC
Q 015760 6 NQGGIVRIKELAM--HVKHKVNLLGVVLEFSIPRKS-QGT-DYVCVLKIVDDSQQ--SPELLVNIFTSSIDQLPRVLSPR 79 (401)
Q Consensus 6 ~~y~y~~i~~~~~--~~~~~vnviGVVvd~~~P~~t-rGt-D~~~tl~I~D~s~~--~~gl~v~iF~~~~e~LP~v~~~G 79 (401)
..|+|+++++++. +.++.||+||||+|+++|++| +|+ ||+|+|+|+|+|+. +.||+|+||++++++||.|.++|
T Consensus 25 ~~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp TTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred cceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 4688999999986 468899999999999999999 999 99999999999965 56999999999999999999999
Q ss_pred CEEEEeeEEEEEecCeeEEEeecCceEEEEEeCCCCCCcccccc--CCCCCCCCHHHHHHHHHHHHhhhcC
Q 015760 80 DLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQS--SPQRFEITEAEERRINVLRQWCVGF 148 (401)
Q Consensus 80 DII~l~rvki~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~P~~~--s~~~~~~~~~e~~~v~~Lr~W~~~~ 148 (401)
|||+|||+|||.|+|++++++++++ +|++|++..+.+..|++. ++.++.++++|++|+..||+||..+
T Consensus 105 DIIlL~rvkiq~~~g~~~~v~~~~~-s~a~f~~~~~~~~~~~~~~~~p~~~~~~~~E~~ya~~L~~~w~~~ 174 (187)
T 1qzg_A 105 QPLLLHQITLRSYRDRTQGLSKDQF-RYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFALLLNKIWDEQ 174 (187)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEE-EEEECCCTTCSCSCCSCCCCSTTBCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEECCeEEEEEcCce-eEEEEeccCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 799999866544334332 2334899999999999999877653
No 4
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=99.96 E-value=9.5e-29 Score=212.40 Aligned_cols=124 Identities=15% Similarity=0.242 Sum_probs=105.3
Q ss_pred cccccccccccCCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCC
Q 015760 155 NDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (401)
Q Consensus 155 ~~f~~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~ 234 (401)
+|| ++|+||++++||||+||||+++++ + ++++|||||||+||.++.+....+. ..|++
T Consensus 3 ~kf-~llkdv~~~~F~Dl~~qVv~~~~~-~-~~~~LyVTDYT~N~~~~~~~~~~~~-------------------~~W~G 60 (143)
T 4hik_A 3 DSF-SLLSQITPHQRCSFYAQVIKTWYS-D-KNFTLYVTDYTENELFFPMSPYTSS-------------------SRWRG 60 (143)
T ss_dssp -CC-CCGGGCCSSCEEEEEEEEEEEEEC-S-SCEEEEEECSCCCTTSCCBCTTCTT-------------------CSCCC
T ss_pred chh-hhHHhCCCCCeEEEEEEEEEEEcC-C-CeEEEEEecCCCCCcccccccCCCC-------------------ccccC
Confidence 479 999999999999999999999944 4 9999999999999998755432210 24555
Q ss_pred C-cc-EEEEEecCcchhhhcccCCCCCEEEEeeeEEEEe-CcEEEEEeecCc----c--eEEccCCChHHHHHhh
Q 015760 235 V-GT-VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSS----K--IRLFSDNDNVVWDYMR 300 (401)
Q Consensus 235 ~-G~-~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~-~G~leG~l~~~s----~--i~~l~~~d~~v~~l~r 300 (401)
+ |. +|||++|++|+.++++++++||||+|+||++|++ +|.|||.|++++ + |..|+.+++.+++++|
T Consensus 61 p~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~ 135 (143)
T 4hik_A 61 PFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKS 135 (143)
T ss_dssp CCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHH
T ss_pred CCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHH
Confidence 4 76 6999999999999999999999999999999997 689999999998 3 5578888899999995
No 5
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.18 E-value=4e-09 Score=107.30 Aligned_cols=317 Identities=11% Similarity=0.073 Sum_probs=189.4
Q ss_pred eeeHHhhhhccCCEEEEEEEEEEcCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEEEe
Q 015760 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLILLK 85 (401)
Q Consensus 10 y~~i~~~~~~~~~~vnviGVVvd~~~P~~---trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~L-P~v~~~GDII~l~ 85 (401)
+++|+++.. ......+.|-|+.....+. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ +.|+++.|.
T Consensus 3 ~~~I~~L~p-~~~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~Is 77 (444)
T 4gop_C 3 IYPIEGLSP-YQNRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG---EIKATGFNDAVDRFYPLL-QENHVYLIS 77 (444)
T ss_dssp CCCSTTCCT-TCCSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEETHHHHHHTTTC-CTTCEEEEE
T ss_pred ceeHHHCCC-CCcceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC---EEEEEEeHHHHHHHHHhe-ecCCEEEEc
Confidence 678999842 2336899999998776542 24445678899999754 49999998755555 455 899999999
Q ss_pred eEEEEEecCeeEE-------EeecCceEEEEEeCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcccc
Q 015760 86 NVMIKKHQAELSA-------VFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYL 158 (401)
Q Consensus 86 rvki~~~~g~~~~-------~~~~~~ss~~lf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~ 158 (401)
+.+++..+++... .++.. |....... ..-.|. ..| .|
T Consensus 78 ~~~V~~~~~~y~~~~~~~ei~~~~~-T~V~~~~d---~~~iP~----~~~---------------------------~f- 121 (444)
T 4gop_C 78 KARVNIAKKQFSNLQNEYEITFENS-TEIEECTD---ATDVPE----VKY---------------------------EF- 121 (444)
T ss_dssp SCEEEECCGGGCSCCCSEEEEECTT-CEEEECSC---CSSSCC----CCC---------------------------CB-
T ss_pred CCEEEecCCccccCCCCEEEEEcCC-cEEEEccC---cccCcc----eee---------------------------cc-
Confidence 9999988765332 22221 22221111 111121 012 24
Q ss_pred ccccccc---CCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCC
Q 015760 159 LSLKDIS---EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (401)
Q Consensus 159 ~~L~di~---~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~ 235 (401)
..|.||. .+..+|+++.|+.+. +.. .+.-+ .||++..-.. +. +..- -
T Consensus 122 ~~i~~i~~~~~~~~vDViG~V~~v~-~~~--~i~~k-~~g~~~~kr~--------------i~----------L~D~--s 171 (444)
T 4gop_C 122 VRINELESVEANQQCDVIGILDSYG-ELS--EIVSK-ASQRPVQKRE--------------LT----------LVDQ--G 171 (444)
T ss_dssp CCGGGGGGSCSSCCCBEEEEEEEEC-CCE--EECCT-TTCSCEEEEE--------------EE----------EECT--T
T ss_pred cCHHHHhccCCCCceEEEEEEEEcC-CcE--EEEEc-cCCceeeEEE--------------EE----------EEeC--C
Confidence 5555554 688999999999987 311 00000 0111100000 00 0000 1
Q ss_pred ccEEEEEecCcchhhhc--ccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCCChHHHHHhhhhhcCCCCCCCCc
Q 015760 236 GTVLRVSTDRSYENFGR--YFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRERISGGHGHMPIW 313 (401)
Q Consensus 236 G~~l~V~~~~~~~~~~~--~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~d~~v~~l~r~r~~~~~~~~p~~ 313 (401)
|..+++++|...+.... .....|..|.|++++++..+|. .......|+|. ++.+-|.+.++.. ...+.-...+..
T Consensus 172 g~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i~-inPdipea~~l~~-w~~~~g~~~~~~ 248 (444)
T 4gop_C 172 NRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTML-INPDITESHVLRG-WYDNDGAHAQFQ 248 (444)
T ss_dssp CBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEEE-ESCSSHHHHHHHH-HHHHHTTTSCCB
T ss_pred CCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-EEeccccceEE-ECCCCHHHHHHHH-HHHcCCCCcccc
Confidence 66788999987664211 1267899999999999987786 55556667774 5566777776653 221100000111
Q ss_pred CCCCCC------cccccccCCCccccHHHHhcCC----CCCceEEEEEEEEEeeCCCc------cc--------------
Q 015760 314 TDPSSQ------FLTEVDWVNVASVTLMKIATQL----QGNVRCCCIVRVVSIHPFQA------EH-------------- 363 (401)
Q Consensus 314 ~~p~~~------~~t~~~~~~~p~ttL~dIL~~~----~~~~kfr~~VRVv~~~P~~~------~d-------------- 363 (401)
++.... ..........+..||.||+... +.+..|.|.+.|+.+-+.+. .+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~C~kkv~~~~~g~~ 328 (444)
T 4gop_C 249 PYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEGCNKKVNLDHENNW 328 (444)
T ss_dssp CCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTTCCCBEEECTTSCE
T ss_pred cccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCcccCCCccccCCCccE
Confidence 110000 0001112234678999999632 34667999999998876332 10
Q ss_pred cccCC------CceEEEEEEEEeCCCceEEEEEeccccccccc
Q 015760 364 YSSPN------GSSEYTMKLTLEDPTARIHALLCGKEWVRFQL 400 (401)
Q Consensus 364 f~~~~------g~~~~~~~L~leD~t~~i~~~v~~~da~~f~~ 400 (401)
.|..+ ..|.|++.+.|.|.|+.+.+.++++.|+.+||
T Consensus 329 ~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG 371 (444)
T 4gop_C 329 RCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIG 371 (444)
T ss_dssp EETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTT
T ss_pred ECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcC
Confidence 22212 25788889999999999999999999999997
No 6
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.52 E-value=4.1e-07 Score=75.10 Aligned_cols=93 Identities=24% Similarity=0.344 Sum_probs=77.3
Q ss_pred CCCcceeeHHhhhhccCCEEEEEEEEEEcCCce--ecC-CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 015760 5 RNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPR--KSQ-GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (401)
Q Consensus 5 ~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~--~tr-Gt-D~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GD 80 (401)
..+|.+++|+++ ..++.++++|+|++.+.++ .++ |+ .-+..++|.|.|- .|.+++|.+..+.+..+ ..||
T Consensus 2 ~~~~~~~~I~~L--~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG---~I~~t~w~~~~~~~~~l-~~G~ 75 (115)
T 2k50_A 2 KPEHRMDTISKL--EEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG---ELRAVFWTENIKLLKKF-REGD 75 (115)
T ss_dssp CCTTCCCCTTTC--CTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE---EEEEEEETTGGGGGGTC-CTTS
T ss_pred ccccceEEHHHC--CCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC---eEEEEEeCchhhhhhcC-CCCC
Confidence 467889999999 4789999999999998776 454 43 5789999999975 39999998765666666 7899
Q ss_pred EEEEeeEEEEE-ecCeeEEEeecC
Q 015760 81 LILLKNVMIKK-HQAELSAVFYKD 103 (401)
Q Consensus 81 II~l~rvki~~-~~g~~~~~~~~~ 103 (401)
+|.+.+..++. |+|++++.....
T Consensus 76 vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 76 VIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEeeEEccccCCeEEEEECCC
Confidence 99999999986 999999888754
No 7
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.50 E-value=6.1e-06 Score=76.91 Aligned_cols=217 Identities=16% Similarity=0.219 Sum_probs=133.9
Q ss_pred cceeeHHhhhhccCCEEEEEEEEEEcCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 015760 8 GGIVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (401)
Q Consensus 8 y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~---trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~L-P~v~~~GDII~ 83 (401)
-.|++|+++.. .....++.|-|+....++. .+|.--..++.|.|++- . |.+.+|.+..+.+ |.+ +.|+++.
T Consensus 6 ~~~~~I~~L~p-~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G-~--I~at~~~~~~~~~~~~l-~~G~vy~ 80 (246)
T 1jmc_A 6 SKVVPIASLTP-YQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG-E--IRATAFNEQVDKFFPLI-EVNKVYY 80 (246)
T ss_dssp -CBCCGGGCCT-TCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC-E--EEEEEEHHHHHHHGGGC-CTTCEEE
T ss_pred cceEEHHHCCC-CCCceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC-e--EEEEEChHHHHHhhhhc-ccCCEEE
Confidence 46889999942 2336899999999887642 24555678899999875 3 9999998654554 445 8999999
Q ss_pred EeeEEEEEecCee-------EEEeecCceEEEEEeCCCCCCccccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcc
Q 015760 84 LKNVMIKKHQAEL-------SAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSND 156 (401)
Q Consensus 84 l~rvki~~~~g~~-------~~~~~~~~ss~~lf~~~~~~~~~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~ 156 (401)
|.+++++..+++. ...++.. |.....+.. .-.| ...|.
T Consensus 81 i~~~~v~~~~~~y~~~~~~~ei~~~~~-T~I~~~~~~---~~iP----~~~~~--------------------------- 125 (246)
T 1jmc_A 81 FSKGTLKIANKQFTAVKNDYEMTFNNE-TSVMPCEDD---HHLP----TVQFD--------------------------- 125 (246)
T ss_dssp EECCEEEECCGGGCCCCCSEEEECCTT-CEEEECCSC---SCCC----CCCCC---------------------------
T ss_pred ECCCEEEEcccCcccCCCCEEEEEcCC-cEEEEccCc---ccCC----cceee---------------------------
Confidence 9999999875443 3333322 222211111 0112 11121
Q ss_pred cccccccc---cCCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCC
Q 015760 157 YLLSLKDI---SEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF 233 (401)
Q Consensus 157 f~~~L~di---~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p 233 (401)
| ..+.|| ..+.++|+++.|+.+. +.. .+.- -.||++..-.. +.+ ..-
T Consensus 126 f-~~i~~i~~~~~~~~vDViG~V~~v~-~~~--~~~~-k~~g~~~~~r~--------------~~l----------~D~- 175 (246)
T 1jmc_A 126 F-TGIDDLENKSKDSLVDIIGICKSYE-DAT--KITV-RSNNREVAKRN--------------IYL----------MDT- 175 (246)
T ss_dssp B-CCGGGGGGSCTTCEEEEEEEEEEEC-CCE--EEEE-TTTTEEEEEEE--------------EEE----------ECT-
T ss_pred e-EEHHHHhcccCCCceeEEEEEEEec-CeE--EEEE-ecCCCccEEEE--------------EEE----------ECC-
Confidence 3 444444 5788999999999887 311 1000 00222111000 000 000
Q ss_pred CCccEEEEEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCCChHHHHHh
Q 015760 234 PVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYM 299 (401)
Q Consensus 234 ~~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~d~~v~~l~ 299 (401)
-|..+++++|...+.. -..+.|+.|.|++++++..+| .+......|+|. ++++-+.+.++.
T Consensus 176 -sg~~i~~tLWg~~a~~--~~~~~~~vv~i~~~~v~~f~g-~~ls~~~~s~i~-inpd~pe~~~l~ 236 (246)
T 1jmc_A 176 -SGKVVTATLWGEDADK--FDGSRQPVLAIKGARVSDFGG-RSLSVLSSSTII-ANPDIPEAYKLR 236 (246)
T ss_dssp -TCCEEEEEEEHHHHHH--CCCTTCCEEEEEEEEEECTTS-SEEECCSSCEEE-SSCCSHHHHHHH
T ss_pred -CCCEEEEEEEchhhhh--cccCCCCEEEEEEEEEEecCC-eEEEecCcceEE-ECCCCHHHHHHH
Confidence 1667899999976652 235789999999999988866 556666777885 666778777664
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.37 E-value=2e-06 Score=70.02 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=71.8
Q ss_pred cceeeHHhhhhccCCE-EEEEEEEEEcCCceecC-CCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 015760 8 GGIVRIKELAMHVKHK-VNLLGVVLEFSIPRKSQ-GTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (401)
Q Consensus 8 y~y~~i~~~~~~~~~~-vnviGVVvd~~~P~~tr-GtD-~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l 84 (401)
|.++.|+|+. ++.. ||++|.|++...|+.++ |+. ..+++.|.|+|= .|.++++.+. + +.||+|++
T Consensus 1 ~~~~kI~dl~--pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG---~I~~tlW~~~------l-~~Gdvv~i 68 (106)
T 2k75_A 1 SDLVKIRDVS--LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA---RIRISSFGKQ------L-QDSDVVRI 68 (106)
T ss_dssp CCBCCSTTCC--TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC---EEEEEEESSC------C-CTTEEEEE
T ss_pred CCcEEHHHcC--CCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC---eEEEEEEcCc------c-CCCCEEEE
Confidence 6788999994 5554 99999999999886443 543 588999999875 2999999864 5 78999999
Q ss_pred eeEEEEEecCeeEEEeecCceEEE
Q 015760 85 KNVMIKKHQAELSAVFYKDSSSFA 108 (401)
Q Consensus 85 ~rvki~~~~g~~~~~~~~~~ss~~ 108 (401)
++.+++.|+|++++..++. +...
T Consensus 69 ~ng~v~~~~g~~~L~v~~~-~~I~ 91 (106)
T 2k75_A 69 DNARVAQFNGYLSLSVGDS-SRIE 91 (106)
T ss_dssp EEEEEEEETTEEEEEECTT-SEEE
T ss_pred EeeEEeEECCEEEEEECCc-EEEE
Confidence 9999999999999988854 4443
No 9
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.22 E-value=5.4e-06 Score=77.28 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=72.5
Q ss_pred CCCcceeeHHhhhhc-cCCEEEEEEEEEEcCCcee--c--CCCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCC
Q 015760 5 RNQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSP 78 (401)
Q Consensus 5 ~~~y~y~~i~~~~~~-~~~~vnviGVVvd~~~P~~--t--rGtD-~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~ 78 (401)
...|.|++|+++.+. .+..|+|+|+|++++++.. + .|++ .+..|+|.|.|.. .+.|.++.+..+.++. ..
T Consensus 121 ~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~--~i~~tLWg~~a~~~~~--~~ 196 (246)
T 1jmc_A 121 TVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGK--VVTATLWGEDADKFDG--SR 196 (246)
T ss_dssp CCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCC--EEEEEEEHHHHHHCCC--TT
T ss_pred cceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCC--EEEEEEEchhhhhccc--CC
Confidence 456889999999752 5778999999999999754 2 3554 5789999999864 4999999986666663 67
Q ss_pred CCEEEEeeEEEEEecCeeEEEee
Q 015760 79 RDLILLKNVMIKKHQAELSAVFY 101 (401)
Q Consensus 79 GDII~l~rvki~~~~g~~~~~~~ 101 (401)
|+||.++.++++.|+| ..+...
T Consensus 197 ~~vv~i~~~~v~~f~g-~~ls~~ 218 (246)
T 1jmc_A 197 QPVLAIKGARVSDFGG-RSLSVL 218 (246)
T ss_dssp CCEEEEEEEEEECTTS-SEEECC
T ss_pred CCEEEEEEEEEEecCC-eEEEec
Confidence 9999999999999955 555443
No 10
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.20 E-value=7.3e-06 Score=83.15 Aligned_cols=89 Identities=16% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCcceeeHHhhhhc-cCCEEEEEEEEEEcCCcee--c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCC--CC
Q 015760 5 RNQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPR--VL 76 (401)
Q Consensus 5 ~~~y~y~~i~~~~~~-~~~~vnviGVVvd~~~P~~--t--rGt-D~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~--v~ 76 (401)
...|.|++|+++... .+..|+|||+|++++++.. + .|+ -.+..|+|.|.|... |.|.++.+..+.+.. ..
T Consensus 116 ~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~--i~~tLWg~~A~~f~~~~~~ 193 (444)
T 4gop_C 116 EVKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRS--VKLTLWGKTAETFPTNAGV 193 (444)
T ss_dssp CCCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBE--EEEEEEHHHHHTSTTSTTS
T ss_pred ceeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCE--EEEEEEhhhhhhhhhhhcc
Confidence 356889999999753 4678999999999998753 2 354 578899999998643 999999876555552 22
Q ss_pred CCCCEEEEeeEEEEEecCe
Q 015760 77 SPRDLILLKNVMIKKHQAE 95 (401)
Q Consensus 77 ~~GDII~l~rvki~~~~g~ 95 (401)
..|+||.++.++++.|+|.
T Consensus 194 ~~~~VV~i~~~kV~~f~G~ 212 (444)
T 4gop_C 194 DEKPVLAFKGVKVGDFGGR 212 (444)
T ss_dssp SSCCEEEEESCEEECTTSS
T ss_pred CCCCEEEEEeEEEeecCCe
Confidence 5799999999999999996
No 11
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.19 E-value=1.5e-05 Score=66.18 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=70.7
Q ss_pred eeeHHhhhhccCC-EEEEEEEEEEcCCce--ecC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 015760 10 IVRIKELAMHVKH-KVNLLGVVLEFSIPR--KSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (401)
Q Consensus 10 y~~i~~~~~~~~~-~vnviGVVvd~~~P~--~tr-GtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~ 85 (401)
|+.|+++. ++. .+|++|+|++...++ .++ |+--..++.|.|.|=. |.++++.+..+ .+ +.||||+++
T Consensus 2 f~~I~dL~--~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~---I~~tlW~~~~~---~~-~~G~vv~i~ 72 (119)
T 1o7i_A 2 EEKVGNLK--PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR---VKLTLWGKHAG---SI-KEGQVVKIE 72 (119)
T ss_dssp BCCGGGCC--TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE---EEEEEEGGGTT---CC-CTTCEEEEE
T ss_pred cEEHHHCc--CCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE---EEEEEECChhh---cC-CCCCEEEEE
Confidence 66799994 464 699999999999766 444 4337889999999752 99999986543 24 789999999
Q ss_pred eEEEEEecCeeEEEeecCceEEE
Q 015760 86 NVMIKKHQAELSAVFYKDSSSFA 108 (401)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~ 108 (401)
+.+++.|+|++++..+.. +...
T Consensus 73 ~g~v~~~~g~~qL~i~~~-~~i~ 94 (119)
T 1o7i_A 73 NAWTTAFKGQVQLNAGSK-TKIA 94 (119)
T ss_dssp EEEEEEETTEEEEEECTT-CEEE
T ss_pred eEEEEEeCCEEEEEECCC-EEEE
Confidence 999999999999888754 4444
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.86 E-value=0.00016 Score=58.98 Aligned_cols=84 Identities=15% Similarity=0.219 Sum_probs=66.9
Q ss_pred eeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEE
Q 015760 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMI 89 (401)
Q Consensus 10 y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~rvki 89 (401)
++.|+|+.. .+..||++|.|++...|+ .|+.+ ..+.|-|+|= .|.++++.+. ..+.+ ..||+|+|+++++
T Consensus 5 ~~kI~dl~~-~~~~v~v~~~V~~~~~~~--~~~~~-~~~~l~DeTG---~I~~t~W~~~--~~~~~-~~G~~V~i~n~~v 74 (109)
T 2kbn_A 5 LTKIVDIVE-NGQWANLKAKVIQLWENT--HESIS-QVGLLGDETG---IIKFTIWKNA--ELPLL-EQGESYLLRSVVV 74 (109)
T ss_dssp BCCTTTCCS-TTCEEEEEEEEEEEEECC--CSSEE-EEEEEECTTC---CEEEEEEGGG--CCCCC-CTTCEEEEEEEEE
T ss_pred ceEHHHCCC-CCCcEEEEEEEEEeEcCC--CCeEE-EEEEEECCCC---eEEEEEECcc--ccccc-CCCCEEEEEEEEE
Confidence 456888842 367899999999998753 34444 4589999874 2999999843 56788 7899999999999
Q ss_pred EEecCeeEEEeecC
Q 015760 90 KKHQAELSAVFYKD 103 (401)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (401)
+.|+|++++..++.
T Consensus 75 ~~~~G~~~L~v~~~ 88 (109)
T 2kbn_A 75 GEYNDRFQVQVNKN 88 (109)
T ss_dssp EEETTEEEEEECSS
T ss_pred EEECCEEEEEECCc
Confidence 99999999988754
No 13
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.77 E-value=0.00013 Score=59.09 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=66.1
Q ss_pred ceeeHHhhhhccCCEEEEEEEEEEcCCcee--c-CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 015760 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRK--S-QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (401)
Q Consensus 9 ~y~~i~~~~~~~~~~vnviGVVvd~~~P~~--t-rGt-D~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l 84 (401)
.|.+|+++. ++..+|++|+|++..+++. + .|+ -...+++|.|.+- .+.+.+|.+..+ + .+ ++||+|.+
T Consensus 4 ~~~~I~dL~--~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG---~IrvtlW~~~a~-~-~l-~~Gdvv~i 75 (105)
T 3dm3_A 4 DTYNIGELS--PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG---SIRVTLWDNLTD-I-DV-GRGDYVRV 75 (105)
T ss_dssp CEECGGGCC--SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE---EEEEEEEGGGGG-S-CC-CTTCEEEE
T ss_pred cceEHHHCC--CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECcccc-c-cc-CCCCEEEE
Confidence 578999994 5688999999999998754 2 354 4678899999865 299999986544 3 55 79999999
Q ss_pred eeEEEEEec-CeeEEEee
Q 015760 85 KNVMIKKHQ-AELSAVFY 101 (401)
Q Consensus 85 ~rvki~~~~-g~~~~~~~ 101 (401)
+.+++.++ |.+.+...
T Consensus 76 -~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 76 -RGYIREGYYGGLECTAN 92 (105)
T ss_dssp -EEEEEECTTSSEEEEEE
T ss_pred -EEEEEEccCCCEEEEeC
Confidence 89999884 47777665
No 14
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.62 E-value=0.00036 Score=55.61 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=63.3
Q ss_pred eeHHhhhhccCCEEEEEEEEEEcCCcee-c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 015760 11 VRIKELAMHVKHKVNLLGVVLEFSIPRK-S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (401)
Q Consensus 11 ~~i~~~~~~~~~~vnviGVVvd~~~P~~-t--rGt-D~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~r 86 (401)
.+|+++ +++..+|++|.|++..+++. + .|+ --..+++|.|+|= .|.+.+|.+..+ + .+ ++||+|.+ +
T Consensus 3 ~kI~dl--~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG---~I~~tlW~~~~~-~-~i-~~Gdvv~i-~ 73 (97)
T 3e0e_A 3 YKISEL--MPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG---SIRGTLWNELAD-F-EV-KKGDIAEV-S 73 (97)
T ss_dssp ECGGGC--CTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE---EEEEEEEGGGGG-C-CC-CTTCEEEE-E
T ss_pred eEHHHC--CCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECCccc-c-cc-CCCCEEEE-E
Confidence 368888 46788999999999998765 2 254 3688899999865 399999986543 4 55 89999999 8
Q ss_pred EEEEEecCeeEEEeec
Q 015760 87 VMIKKHQAELSAVFYK 102 (401)
Q Consensus 87 vki~~~~g~~~~~~~~ 102 (401)
.+++.+.|++++..++
T Consensus 74 g~v~~~~~~~el~~g~ 89 (97)
T 3e0e_A 74 GYVKQGYSGLEISVDN 89 (97)
T ss_dssp EEEEEC--CEEEEEEE
T ss_pred EEEEEcCCeEEEEECC
Confidence 8999999988877663
No 15
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=97.52 E-value=0.0013 Score=53.17 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=65.8
Q ss_pred cccccccCCce-eeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCCcc
Q 015760 159 LSLKDISEHRY-FDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGT 237 (401)
Q Consensus 159 ~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~G~ 237 (401)
..|+||+++.- ++++++|+.+. +.. .=-||+ +.......+.| + -|
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~-~~~------~~k~G~--~~~v~~~~l~D----------e--------------TG- 49 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIH-KKE------YESDGT--TKSVYQGYIED----------D--------------TA- 49 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEE-EEE------EEETTE--EEEEEEEEEEC----------S--------------SC-
T ss_pred EEHHHcCCCCceEEEEEEEEEcc-ccc------cccCCC--eeEEEEEEEEc----------C--------------CC-
Confidence 67999999865 99999999998 421 011221 00000000101 0 13
Q ss_pred EEEEEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCCCh
Q 015760 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (401)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~d~ 293 (401)
.+++++|+.. +++|+.|+++|..++...|.++..+...+.|..+++..+
T Consensus 50 ~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 50 RIRISSFGKQ-------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp EEEEEEESSC-------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEECCSCCC
T ss_pred eEEEEEEcCc-------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEECCCCCc
Confidence 3578888853 999999999999999999999999999999998887655
No 16
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.31 E-value=0.0017 Score=53.09 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=68.7
Q ss_pred cccccccccCCceeeeEEEEEEEEee----C-C---CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHh
Q 015760 157 YLLSLKDISEHRYFDLVCKVFHVSYD----D-S---KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLET 228 (401)
Q Consensus 157 f~~~L~di~~~~f~Dl~~qVv~~~~~----~-~---~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 228 (401)
| ..|+|+++++.+|+++.|+.+... . + .....+.+.|.|
T Consensus 7 ~-~~I~~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~T-------------------------------- 53 (115)
T 2k50_A 7 M-DTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDT-------------------------------- 53 (115)
T ss_dssp C-CCTTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETT--------------------------------
T ss_pred e-EEHHHCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCC--------------------------------
Confidence 5 789999999999999999998411 0 1 124455555554
Q ss_pred hhcCCCCccEEEEEecCcchhhhcccCCCCCEEEEeeeEEEE-eCcEEEEEeecCcceEEccC
Q 015760 229 LRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSSKIRLFSD 290 (401)
Q Consensus 229 ~~~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~-~~G~leG~l~~~s~i~~l~~ 290 (401)
| .+++++|+..+.. ...+++|+.|.+.|..++. ..|.++..+...+.+...++
T Consensus 54 -------G-~I~~t~w~~~~~~-~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 54 -------G-ELRAVFWTENIKL-LKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp -------E-EEEEEEETTGGGG-GGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESS
T ss_pred -------C-eEEEEEeCchhhh-hhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEECCc
Confidence 3 3567888876543 4679999999999999876 67888889888888887665
No 17
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.30 E-value=0.0057 Score=49.63 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=65.8
Q ss_pred cccccccC-CceeeeEEEEEEEEeeCCCCeE--EEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCC
Q 015760 159 LSLKDISE-HRYFDLVCKVFHVSYDDSKGLW--MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (401)
Q Consensus 159 ~~L~di~~-~~f~Dl~~qVv~~~~~~~~~~~--~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~ 235 (401)
..|+||++ +..++++++|+.+. +..++.. .+-|=|.|
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~-~~~~~~~~~~~~l~DeT--------------------------------------- 45 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLW-ENTHESISQVGLLGDET--------------------------------------- 45 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTT---------------------------------------
T ss_pred eEHHHCCCCCCcEEEEEEEEEeE-cCCCCeEEEEEEEECCC---------------------------------------
Confidence 67999988 77899999999998 5222111 11111111
Q ss_pred ccEEEEEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCC
Q 015760 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (401)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~ 291 (401)
| .++.++|+.. ....+++|+.|+++|..++...|.++-.+...+.|..++++
T Consensus 46 G-~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 46 G-IIKFTIWKNA---ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp C-CEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSC
T ss_pred C-eEEEEEECcc---cccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCc
Confidence 3 3577888843 24679999999999999999999999999988888876654
No 18
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.27 E-value=0.00091 Score=57.21 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCCcceeeHHhhhhccCC-EEEEEEEEEEcCCce---ec-C--C-------CceEEEEEEEeCCCCCCCeEEEEecCCCC
Q 015760 5 RNQGGIVRIKELAMHVKH-KVNLLGVVLEFSIPR---KS-Q--G-------TDYVCVLKIVDDSQQSPELLVNIFTSSID 70 (401)
Q Consensus 5 ~~~y~y~~i~~~~~~~~~-~vnviGVVvd~~~P~---~t-r--G-------tD~~~tl~I~D~s~~~~gl~v~iF~~~~e 70 (401)
..+-.|+.|+|+. ++. .+|+.|.|++...+. +. | | ..-.+++.|-|++=. |.+.+..+.
T Consensus 11 ~~kp~~~kI~dL~--pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~---I~ftlW~e~-- 83 (145)
T 1wjj_A 11 KRKPVFVKVEQLK--PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC---ILFTARNDQ-- 83 (145)
T ss_dssp CCCCSSCCSTTCC--TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE---EEEEECTTH--
T ss_pred ccCccceEHHHcC--CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE---EEEEEecCC--
Confidence 3456689999995 443 599999999988765 22 2 4 456788899998653 777777742
Q ss_pred CCCCCCCCCCEEEEeeEEEEEecCeeEEEeecC
Q 015760 71 QLPRVLSPRDLILLKNVMIKKHQAELSAVFYKD 103 (401)
Q Consensus 71 ~LP~v~~~GDII~l~rvki~~~~g~~~~~~~~~ 103 (401)
.+.+ +.||+|+|+++.++.|+|.+.+..++.
T Consensus 84 -~~~l-~~Gd~v~i~na~v~~~~G~~~L~vgk~ 114 (145)
T 1wjj_A 84 -VDLM-KPGATVILRNSRIDMFKGTMRLGVDKW 114 (145)
T ss_dssp -HHHT-CTTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred -cCcC-CCCCEEEEeccEEEeECCEEEEEECCC
Confidence 3345 689999999999999999998877743
No 19
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.25 E-value=0.0033 Score=51.79 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=65.1
Q ss_pred cccccccCCc-eeeeEEEEEEEEe--e--CCCC---eEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhh
Q 015760 159 LSLKDISEHR-YFDLVCKVFHVSY--D--DSKG---LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLR 230 (401)
Q Consensus 159 ~~L~di~~~~-f~Dl~~qVv~~~~--~--~~~~---~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~ 230 (401)
..|+||+++. -+|+++.|+.+.. . ..++ ...+.|-|-
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~----------------------------------- 47 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDE----------------------------------- 47 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEET-----------------------------------
T ss_pred EEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeC-----------------------------------
Confidence 6799999986 7999999998861 1 0111 112222221
Q ss_pred cCCCCccEEEEEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccC
Q 015760 231 NFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSD 290 (401)
Q Consensus 231 ~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~ 290 (401)
-|+ +++++|+..+ +.+++|+.|+++|..++...|.++..+...+.|...++
T Consensus 48 ----TG~-I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~ 98 (119)
T 1o7i_A 48 ----TGR-VKLTLWGKHA----GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASE 98 (119)
T ss_dssp ----TEE-EEEEEEGGGT----TCCCTTCEEEEEEEEEEEETTEEEEEECTTCEEEECCC
T ss_pred ----CCE-EEEEEECChh----hcCCCCCEEEEEeEEEEEeCCEEEEEECCCEEEEEcCC
Confidence 155 6788898643 45899999999999999999999999999999988765
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=96.93 E-value=0.018 Score=49.09 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=41.3
Q ss_pred EEEEEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCC
Q 015760 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (401)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~ 291 (401)
.+++++|+... ..+++||.|+|+|..+++..|.++..+...++|..+++.
T Consensus 74 ~I~ftlW~e~~----~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~ 123 (145)
T 1wjj_A 74 CILFTARNDQV----DLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAA 123 (145)
T ss_dssp EEEEEECTTHH----HHTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCC
T ss_pred EEEEEEecCCc----CcCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCC
Confidence 35788898632 448999999999999999999999988888888766653
No 21
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.92 E-value=0.12 Score=41.39 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=58.8
Q ss_pred ccccccccccCCceeeeEEEEEEEEeeCC-----CC----eEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcH
Q 015760 156 DYLLSLKDISEHRYFDLVCKVFHVSYDDS-----KG----LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDL 226 (401)
Q Consensus 156 ~f~~~L~di~~~~f~Dl~~qVv~~~~~~~-----~~----~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~ 226 (401)
.| ..|+||+++..+|+++.|+.+. +.. ++ ...+.|-|.|
T Consensus 4 ~~-~~I~dL~~~~~v~v~g~V~~~~-~~r~~~~~~G~~~~v~~~~l~D~T------------------------------ 51 (105)
T 3dm3_A 4 DT-YNIGELSPGMTATFEGEVISAL-PIKEFKRADGSIGKLKSFIVRDET------------------------------ 51 (105)
T ss_dssp CE-ECGGGCCSSEEEEEEEEEEEEE-EEEEEECTTSCEEEEEEEEEEETT------------------------------
T ss_pred cc-eEHHHCCCCCeEEEEEEEEECC-CceEEEcCCCCeeEEEEEEEECCC------------------------------
Confidence 36 7899999999999999999887 310 00 1122222211
Q ss_pred HhhhcCCCCccEEEEEecCcchhhhcccCCCCCEEEEeeeEEEEe-CcEEEEEeecCcceE
Q 015760 227 ETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSSKIR 286 (401)
Q Consensus 227 ~~~~~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~-~G~leG~l~~~s~i~ 286 (401)
| .+++++|...+.. .+++|+.|.| |-.++.. +|-+|..+-..+.|.
T Consensus 52 ---------G-~IrvtlW~~~a~~---~l~~Gdvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 52 ---------G-SIRVTLWDNLTDI---DVGRGDYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp ---------E-EEEEEEEGGGGGS---CCCTTCEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred ---------C-cEEEEEECccccc---ccCCCCEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 5 4689988865542 7999999999 8888886 556777666655554
No 22
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.40 E-value=0.17 Score=39.86 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=54.2
Q ss_pred cccccccCCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCCccE
Q 015760 159 LSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTV 238 (401)
Q Consensus 159 ~~L~di~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~G~~ 238 (401)
..|+||+++..+++++.|+.+. +. -...=.||++-.-.. ..+.| + -| .
T Consensus 3 ~kI~dl~~g~~v~i~~~V~~~~-~~----r~~~~~~G~~~~v~~--~~l~D----------e--------------TG-~ 50 (97)
T 3e0e_A 3 YKISELMPNLSGTINAEVVTAY-PK----KEFSRKDGTKGQLKS--LFLKD----------D--------------TG-S 50 (97)
T ss_dssp ECGGGCCTTEEEEEEEEEEEEC-CC----EEEC----CCEEEEE--EEEEE----------T--------------TE-E
T ss_pred eEHHHCCCCCcEEEEEEEEECC-Cc----eEEEcCCCCeeEEEE--EEEEC----------C--------------CC-c
Confidence 4699999999999999999887 21 111112332110000 00000 0 14 5
Q ss_pred EEEEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceE
Q 015760 239 LRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286 (401)
Q Consensus 239 l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~ 286 (401)
+++++|+..+.. .+++||.|.+ |=.++...|.+|..+-..+.|.
T Consensus 51 I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 51 IRGTLWNELADF---EVKKGDIAEV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEEGGGGGC---CCCTTCEEEE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EEEEEECCcccc---ccCCCCEEEE-EEEEEEcCCeEEEEECCCcEEE
Confidence 688988865432 6999999999 6677777777776666655553
No 23
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=95.03 E-value=0.27 Score=46.62 Aligned_cols=85 Identities=16% Similarity=0.090 Sum_probs=60.2
Q ss_pred ccccccccccCCceeeeEEEEEEEEee----CCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhc
Q 015760 156 DYLLSLKDISEHRYFDLVCKVFHVSYD----DSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRN 231 (401)
Q Consensus 156 ~f~~~L~di~~~~f~Dl~~qVv~~~~~----~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~ 231 (401)
+| ..|++++.++.+|+++-|+..... -.+-..+|.++|-+.
T Consensus 5 ~y-~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~---------------------------------- 49 (294)
T 1xjv_A 5 IY-TPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN---------------------------------- 49 (294)
T ss_dssp CC-CCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC----------------------------------
T ss_pred eE-EEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC----------------------------------
Confidence 46 789999999999999999977631 123478888888430
Q ss_pred CCCCccEEEEEecCcchhhhcccC-CCCCEEEEeeeEEEEeCcEEEEEeec
Q 015760 232 FFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQS 281 (401)
Q Consensus 232 ~p~~G~~l~V~~~~~~~~~~~~~~-k~g~wv~l~Nv~~k~~~G~leG~l~~ 281 (401)
.| |.|.+...+.+. ...+ ++||.|+|+|++++...|...|....
T Consensus 50 ---~g--l~v~iF~~~~~~-LP~v~~~GDII~l~~vki~~~~g~~~~v~~~ 94 (294)
T 1xjv_A 50 ---VK--LTCLLFSGNYEA-LPIIYKNGDIVRFHRLKIQVYKKETQGITSS 94 (294)
T ss_dssp ---CE--EEEEEEESSGGG-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ---CC--EEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCeEEEEccC
Confidence 12 344433333332 5556 89999999999999998888875543
No 24
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.2 Score=40.65 Aligned_cols=101 Identities=11% Similarity=0.110 Sum_probs=66.5
Q ss_pred cccccccccCCce-eeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCC
Q 015760 157 YLLSLKDISEHRY-FDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (401)
Q Consensus 157 f~~~L~di~~~~f-~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~ 235 (401)
+ .+|++|.++.. ..+.++|+++. + ++.|-....+...+.. . +..- -
T Consensus 4 ~-~~Is~L~p~~~~w~I~~rV~~k~-~-------~r~~~~~~~~g~~~~~----------~------------L~De--~ 50 (114)
T 1ynx_A 4 I-FAIEQLSPYQNVWTIKARVSYKG-E-------IKTWHNQRGDGKLFNV----------N------------FLDT--S 50 (114)
T ss_dssp B-CCGGGCCTTTCCCEEEEEEEEEE-E-------EEEEECSSCEEEEEEE----------E------------EEET--T
T ss_pred e-EEHHHCCCCCCceEEEEEEEEec-c-------ceEEecCCCCceEEEE----------E------------EECC--C
Confidence 5 78999998864 89999999887 3 1112100000000000 0 0000 2
Q ss_pred ccEEEEEecCcchhhhcccCCCCCEEEEeeeEEEEe-------CcEEEEEeecCcceEEccCC
Q 015760 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-------SGMWHGLLQSSSKIRLFSDN 291 (401)
Q Consensus 236 G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~-------~G~leG~l~~~s~i~~l~~~ 291 (401)
| .++.++|..........+++|+|+.|.|-.++.. .+-+|-.|...+.|...+++
T Consensus 51 G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 51 G-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp E-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred C-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 7 7788888876543467799999999999999984 35678899999999877654
No 25
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=94.47 E-value=0.38 Score=36.23 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=68.6
Q ss_pred HHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEEEE
Q 015760 13 IKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMIKK 91 (401)
Q Consensus 13 i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~-~~e~LP~v~~~GDII~l~rvki~~ 91 (401)
|+++++...+..++.+-|+|... +|--+.++|.|-|+.. .++|.||-+ ..|.--.. ++.---.+..+.-|.
T Consensus 4 isevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvrqi 75 (109)
T 3u4z_A 4 ISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVRQI 75 (109)
T ss_dssp HHHHTTCCCSEEEEEEEEEEEEC------CSSCEEEEEECSSCSS-CEEEEECTTHHHHHTTTC-CTTCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc------CCCceEEEeecccccc-eeEEEEchhHHHHHHhhc-chhhhhhHHHHHHHH
Confidence 67788778888999999999754 6667889999999974 599999975 22444455 778888999999999
Q ss_pred ecCeeEEEeecCceEE
Q 015760 92 HQAELSAVFYKDSSSF 107 (401)
Q Consensus 92 ~~g~~~~~~~~~~ss~ 107 (401)
||++.++-.|-. ||.
T Consensus 76 yndevqlknnih-ssi 90 (109)
T 3u4z_A 76 YNDEVQLKNNIH-SSI 90 (109)
T ss_dssp SSSCEEEECCTT-CEE
T ss_pred hhhHHhHhhhhh-hhh
Confidence 999999988755 443
No 26
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=94.12 E-value=0.88 Score=40.20 Aligned_cols=90 Identities=11% Similarity=0.142 Sum_probs=57.7
Q ss_pred cccccCCceeeeEEEEEEEEe--eC---C-CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCC
Q 015760 161 LKDISEHRYFDLVCKVFHVSY--DD---S-KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (401)
Q Consensus 161 L~di~~~~f~Dl~~qVv~~~~--~~---~-~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~ 234 (401)
|.+++.++.+|+++-|+.... .. . +-..+|.++|-+- + .++
T Consensus 36 l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~-~--------------------------------~~~ 82 (187)
T 1qzg_A 36 QELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC-D--------------------------------TSS 82 (187)
T ss_dssp TSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS-C--------------------------------TTS
T ss_pred HhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCC-C--------------------------------CCC
Confidence 455678999999999987653 21 2 3478899999441 0 001
Q ss_pred CccEEEEEecCcchhhhcccC-CCCCEEEEeeeEEEEeCcEEEEEeecCcceE
Q 015760 235 VGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286 (401)
Q Consensus 235 ~G~~l~V~~~~~~~~~~~~~~-k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~ 286 (401)
.|=.+.+...+. + ....+ ++||.|+|+|++++.++|...|.........
T Consensus 83 ~gL~v~iF~~~~--e-~LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~~s~a 132 (187)
T 1qzg_A 83 IGLQIHLFSKQG--N-DLPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQFRYA 132 (187)
T ss_dssp CCEEEEEEESSS--S-CSCCCCSTTCEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceEEEEECCCh--h-hCCCCCCCCCEEEEEEEEEEEECCeEEEEEcCceeEE
Confidence 122233333322 2 24555 7899999999999999998888655543333
No 27
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.018 Score=47.00 Aligned_cols=81 Identities=11% Similarity=0.141 Sum_probs=63.2
Q ss_pred ceeeHHhhhhccCC-EEEEEEEEEEcCCcee---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 015760 9 GIVRIKELAMHVKH-KVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (401)
Q Consensus 9 ~y~~i~~~~~~~~~-~vnviGVVvd~~~P~~---trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~L-P~v~~~GDII~ 83 (401)
.+++|+++ .++. ..++.|-|+....++. .+|....+++.|.|++- .|.+.+|.+..+.+ +.+ ++|+++.
T Consensus 3 ~~~~Is~L--~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~ 76 (114)
T 1ynx_A 3 PIFAIEQL--SPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG---EIRATAFNDFATKFNEIL-QEGKVYY 76 (114)
T ss_dssp CBCCGGGC--CTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE---EEEEEECHHHHHHHHHHS-CSSSEEE
T ss_pred ceEEHHHC--CCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC---eEEEEECHHHHHHHHhhc-ccCcEEE
Confidence 57899999 4544 5899999998776532 25667889999999975 49999999755544 445 8999999
Q ss_pred EeeEEEEEecCe
Q 015760 84 LKNVMIKKHQAE 95 (401)
Q Consensus 84 l~rvki~~~~g~ 95 (401)
+.+.+++.-+++
T Consensus 77 Is~~~V~~a~~~ 88 (114)
T 1ynx_A 77 VSKAKLQPAKPQ 88 (114)
T ss_dssp EESCEEEECCTT
T ss_pred ECCcEEEECCCC
Confidence 999999986554
No 28
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.54 E-value=0.22 Score=43.91 Aligned_cols=71 Identities=7% Similarity=-0.060 Sum_probs=52.9
Q ss_pred ccccHHHHhcCC----CCCceEEEEEEEEEeeCCCcc------cccc--------------CC------CceEEEEEEEE
Q 015760 330 ASVTLMKIATQL----QGNVRCCCIVRVVSIHPFQAE------HYSS--------------PN------GSSEYTMKLTL 379 (401)
Q Consensus 330 p~ttL~dIL~~~----~~~~kfr~~VRVv~~~P~~~~------df~~--------------~~------g~~~~~~~L~l 379 (401)
+..||.||.... +-|.-|.+.+.|+.+-+.+.- +-|. -+ -.|.|.+.+.|
T Consensus 6 ~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~i 85 (181)
T 1l1o_C 6 NWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNI 85 (181)
T ss_dssp CBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEEE
T ss_pred ceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEEE
Confidence 567899988522 345669999999988664331 0011 11 25789999999
Q ss_pred eCCCceEEEEEeccccccccc
Q 015760 380 EDPTARIHALLCGKEWVRFQL 400 (401)
Q Consensus 380 eD~t~~i~~~v~~~da~~f~~ 400 (401)
.|.||.+.+.++++.|+.+||
T Consensus 86 ~D~Tg~~~~t~F~~~ae~ilG 106 (181)
T 1l1o_C 86 ADFQENQWVTCFQESAEAILG 106 (181)
T ss_dssp ECSSCEEEEEEEHHHHHHHHS
T ss_pred EeCCCCEEEEEEhHHHHHHhC
Confidence 999999999999999999997
No 29
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=93.40 E-value=0.86 Score=48.24 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=95.6
Q ss_pred eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEEEEecC-----eeEEEeecCceEEEEEeCCCCCCc
Q 015760 44 YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA-----ELSAVFYKDSSSFALFDGNSGSNL 118 (401)
Q Consensus 44 ~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~rvki~~~~g-----~~~~~~~~~~ss~~lf~~~~~~~~ 118 (401)
=..+++|+|-.-......++|-+++.+ +......|.++++.++.....++ .+++.+.+. +.|---+.... .+
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~-T~~~~L~~~~~-~~ 587 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKR-TQYQQLPVSSE-TL 587 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEE-EEEEEECCCHH-HH
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCCccCccceEEEeeccc-ceeEECCcchh-hh
Confidence 356788888554445688899998654 44434889999999998876654 356666533 56653321110 00
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccc---ccCCceeeeEEEEEEEEeeCCCCeEEEEEEcC
Q 015760 119 LPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKD---ISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDG 195 (401)
Q Consensus 119 ~P~~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~L~d---i~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDg 195 (401)
.+ .|++. ... .| ..|.+ ..+.+.||++|-||.|- ...+..-.+|+.|+
T Consensus 588 ~~------~~~pR-------------------~~~--~~-~~l~~~~f~p~~~EvDivG~Vv~v~-~~~~~~~~vylsD~ 638 (738)
T 1miu_A 588 LQ------VYQPR-------------------ESL--HF-SRLSDPAFQPPCSEVDVVGVVVSVV-KPIGLAPLVYLSDE 638 (738)
T ss_dssp TT------TCCCC-------------------CBC--CS-GGGGSSSCCTTTTEEEEEEEEEEEE-CCTTSCCEEEEECS
T ss_pred cc------ccCCc-------------------cee--eH-HHhcCccccCCCCceeEEEEEEEEc-ccCcccceEEEEcC
Confidence 00 01110 001 14 44444 45688999999999997 43455668888885
Q ss_pred CCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCCccEEEEEecCcchhhhcccCCCCCEEEEeeeEEEEe
Q 015760 196 TDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS 271 (401)
Q Consensus 196 T~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~G~~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~ 271 (401)
.-| .+-|.+|.... .+ +++|..|-+.||+.+.-
T Consensus 639 ~~n---------------------------------------ll~Ikf~~~l~---eD-~~~~~~va~sNL~~r~~ 671 (738)
T 1miu_A 639 CLN---------------------------------------LLVVKFGIDLN---ED-IKPRVLIAASNLQCQPE 671 (738)
T ss_dssp SSC---------------------------------------EEEEEESSCCC---SC-CCSSCEEEEEEEECCSC
T ss_pred CCc---------------------------------------EEEEEEecCch---hh-CccccEEEEeeeEeecc
Confidence 411 23466666533 34 99999999999998863
No 30
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=93.17 E-value=0.72 Score=38.41 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=50.4
Q ss_pred CEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC----CCCCCCCCCCEEEEeeEEEEEecCeeE
Q 015760 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID----QLPRVLSPRDLILLKNVMIKKHQAELS 97 (401)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e----~LP~v~~~GDII~l~rvki~~~~g~~~ 97 (401)
..|.+.|+|+.... +. =.++++|-|.+= .|.|.++....+ ..+.+ .+||+|++..- ++.|+|+.+
T Consensus 37 ~~V~iVG~V~~~~~-----~~-~~~~~~ldD~TG---~I~~~~W~~~~~~~~~~~~~~-~~g~yVrV~G~-v~~f~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISR-----NA-TNVAYSVEDGTG---QIEVRQWLDSSSDDSSKASEI-RNNVYVRVLGT-LKSFQNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEE-----CS-SEEEEEEECSSC---EEEEEEECC--------CCSC-CTTCEEEEEEE-EEEETTEEE
T ss_pred EEEEEEEEEEEEEe-----cC-CeEEEEEECCCC---CEEEEEecccCCccccccccc-CCCCEEEEEEE-EEEeCCEEE
Confidence 35899999999853 12 256789988764 299999986443 46667 79999999665 899999987
Q ss_pred EEee
Q 015760 98 AVFY 101 (401)
Q Consensus 98 ~~~~ 101 (401)
+...
T Consensus 106 i~~~ 109 (136)
T 4gop_B 106 ISSG 109 (136)
T ss_dssp EEES
T ss_pred EEEE
Confidence 7654
No 31
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=92.68 E-value=1.1 Score=37.07 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=49.0
Q ss_pred CEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCC---CCCCCCCCCEEEEeeEEEEEecCeeEE
Q 015760 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQ---LPRVLSPRDLILLKNVMIKKHQAELSA 98 (401)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~---LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (401)
..|.+.|+|.+... .+-.++++|-|.+-. .|.|.++.+..+. ...+ ..||.|++..- ++.|+|+.++
T Consensus 32 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG~--~I~~~~W~~~~~~~~~~~~~-~~g~yVrV~G~-l~~f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK------APTNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV-PPETYVKVAGH-LRSFQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSSS--CEEEEEEC---------CCC-CTTCEEEEEEE-EEEETTEEEE
T ss_pred EEEEEEEEEEEEEE------cCCeEEEEEECCCCC--EEEEEEEccCCCcccccccc-cCCCEEEEEEE-EEeECCEEEE
Confidence 35889999999853 234578899997642 2999999764322 4555 78999999665 8899999876
Q ss_pred Eee
Q 015760 99 VFY 101 (401)
Q Consensus 99 ~~~ 101 (401)
...
T Consensus 102 ~~~ 104 (132)
T 3kdf_D 102 VAF 104 (132)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 32
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=91.73 E-value=1.3 Score=36.88 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=69.1
Q ss_pred eeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEE
Q 015760 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMI 89 (401)
Q Consensus 11 ~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~-~~e~LP~v~~~GDII~l~rvki 89 (401)
.-|+++++...+..+|.+-|+|... +|--+.++|.|-|+.. .++|.||-+ .-|.--.. ++.---.+..+.-
T Consensus 120 llisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvr 191 (213)
T 3u58_A 120 LLISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVR 191 (213)
T ss_dssp BCHHHHTTCCCSEEEEEEEEEEEEE------CSSCEEEEEECTTCSC-CEEEEECTTTTGGGTTCC-CTTCEEEEEEEEE
T ss_pred eehHHHHHHhHHHHHHHHHhhcccc------CCCceEEEeecccccc-eeEEEEchhHhhHhhhhc-chhhhhhHHHHHH
Confidence 3578888778888999999999753 5667889999999974 599999975 34555555 7888889999999
Q ss_pred EEecCeeEEEeecC
Q 015760 90 KKHQAELSAVFYKD 103 (401)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (401)
|.||++.++-.|-.
T Consensus 192 qiyndevqlknnih 205 (213)
T 3u58_A 192 QIYNDEVQLKNNIH 205 (213)
T ss_dssp CCSSSSCEEECCTT
T ss_pred HHhhhhhhhhhhhh
Confidence 99999999877754
No 33
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=91.05 E-value=0.2 Score=44.88 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=57.9
Q ss_pred CcceeeHHhhhhc--c----CCEEEEEEEEEEcCCceec-CCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 015760 7 QGGIVRIKELAMH--V----KHKVNLLGVVLEFSIPRKS-QGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (401)
Q Consensus 7 ~y~y~~i~~~~~~--~----~~~vnviGVVvd~~~P~~t-rGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~G 79 (401)
...|++|.+++.. . ....-++|||++-..|+.+ +|+.|+ ..+|.|-......+.+-+|.+..+.+=.+ .+|
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y~-~w~l~DL~~~~~~V~lfLFg~a~~~~~k~-~~G 112 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFS-IWRLNDLKDLDKYISLFLFGDVHKEHWKT-DQG 112 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CCE-EEEEECSSSTTCCEEEEECHHHHHHHTTC-CTT
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeEE-EEEEEecCCCCcEEEEEEechHHHHhcCc-CCc
Confidence 4578888888652 1 2356699999999999877 466664 68998876654569999998755656677 799
Q ss_pred CEEEEeeEEEE
Q 015760 80 DLILLKNVMIK 90 (401)
Q Consensus 80 DII~l~rvki~ 90 (401)
+||-|=|-.+-
T Consensus 113 ~ViaiLNP~i~ 123 (200)
T 3ebe_A 113 TVIGLLNANPM 123 (200)
T ss_dssp EEEEEESCEEC
T ss_pred eEEEEECCEEc
Confidence 99999998864
No 34
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=90.48 E-value=0.51 Score=39.91 Aligned_cols=77 Identities=10% Similarity=0.115 Sum_probs=55.7
Q ss_pred ceeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCC--------------CC------CeEEEEecCC
Q 015760 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ--------------SP------ELLVNIFTSS 68 (401)
Q Consensus 9 ~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~--------------~~------gl~v~iF~~~ 68 (401)
+|.-|+|+ ..++.++++|=|+.. +. .+ -+++|.++|=+.. |. .|.|.+|-++
T Consensus 4 kf~llkdv--~~~~F~Dl~~qVv~~--~~--~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 4 SFSLLSQI--TPHQRCSFYAQVIKT--WY--SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp CCCCGGGC--CSSCEEEEEEEEEEE--EE--CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred hhhhHHhC--CCCCeEEEEEEEEEE--Ec--CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 46668888 579999999999983 21 22 5678889885543 11 2899998765
Q ss_pred CCCCCC-CCCCCCEEEEeeEEEEEecC
Q 015760 69 IDQLPR-VLSPRDLILLKNVMIKKHQA 94 (401)
Q Consensus 69 ~e~LP~-v~~~GDII~l~rvki~~~~g 94 (401)
.+..=. + .+||+|+|+|++|+.-++
T Consensus 76 a~~ar~~l-k~Gd~v~L~Nv~iK~~~~ 101 (143)
T 4hik_A 76 DFYCRNYI-KEGDYVVMKNVRTKIDHL 101 (143)
T ss_dssp HHHHTTTC-CTTCEEEEEEEEEEECTT
T ss_pred HHHHHhhC-CCCCEEEEEeEEEeecCC
Confidence 433333 5 789999999999997754
No 35
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=89.64 E-value=2.5 Score=39.38 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=56.5
Q ss_pred eeeHHhhhhcc--C----------CEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCC
Q 015760 10 IVRIKELAMHV--K----------HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPR 74 (401)
Q Consensus 10 y~~i~~~~~~~--~----------~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e---~LP~ 74 (401)
=+.|+++++.. + ..|.++|+|+.... ++ =.++++|-|.+=. -|.+.++....+ ....
T Consensus 48 PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~-----~~-~~~~~~L~D~TG~--~I~~k~W~~~~~~~~~~~~ 119 (270)
T 2pi2_A 48 PCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK-----AP-TNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTV 119 (270)
T ss_dssp ECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE-----CS-SEEEEEEECSSSS--CEEEEEECC-------CCC
T ss_pred EEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEe-----cc-ceEEEEEECCCCC--EEEEEEEcCcCcccchhhc
Confidence 35678887631 1 25889999999742 23 3568899997641 299999975432 3445
Q ss_pred CCCCCCEEEEeeEEEEEecCeeEEEee
Q 015760 75 VLSPRDLILLKNVMIKKHQAELSAVFY 101 (401)
Q Consensus 75 v~~~GDII~l~rvki~~~~g~~~~~~~ 101 (401)
+ ..|++|+++. +++.|+|+.++...
T Consensus 120 ~-~~G~yVrV~G-~v~~f~g~~qi~i~ 144 (270)
T 2pi2_A 120 V-PPETYVKVAG-HLRSFQNKKSLVAF 144 (270)
T ss_dssp C-CTTCEEEEEE-EEEEETTEEEEEEE
T ss_pred C-CCCCEEEEEE-EEEecCCeeEEEEE
Confidence 5 7899999975 88899999887664
No 36
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=89.15 E-value=3.9 Score=41.58 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=67.6
Q ss_pred ccccccccc--cCCceeeeEEEEEEEEe--eC--CCCeEEEEEEcCCCC-CCCCCCCCCCcccCCCCCccccCCCCcHHh
Q 015760 156 DYLLSLKDI--SEHRYFDLVCKVFHVSY--DD--SKGLWMLFVWDGTDV-PPLSIPGKLEDEEHNPLPLHIESSPLDLET 228 (401)
Q Consensus 156 ~f~~~L~di--~~~~f~Dl~~qVv~~~~--~~--~~~~~~L~VwDgT~~-p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~ 228 (401)
.| ..|+++ +.++.+|+++-|+.... .. .+...+|.|+|-+-+ +...|.+ +.
T Consensus 37 ~y-~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~G------------------l~--- 94 (495)
T 1jb7_A 37 EY-VELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAG------------------DA--- 94 (495)
T ss_dssp CB-CCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSC------------------SC---
T ss_pred cc-EEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccc------------------cc---
Confidence 47 889988 47999999999997652 11 234889999996632 1100000 00
Q ss_pred hhcCCCCccEEEEEecCcchhhhcccC-CCCCEEEEeeeEEEEeCcEEEEEeecC--cceEEccCCC
Q 015760 229 LRNFFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS--SKIRLFSDND 292 (401)
Q Consensus 229 ~~~~p~~G~~l~V~~~~~~~~~~~~~~-k~g~wv~l~Nv~~k~~~G~leG~l~~~--s~i~~l~~~d 292 (401)
..++.|.+-..+.+ ....+ ++||.|+|+|++++.+.|...|..... +.+.+.+.+.
T Consensus 95 -------~~~~~v~iF~~~~e-~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~ 153 (495)
T 1jb7_A 95 -------SDYATLVLYAKRFE-DLPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDK 153 (495)
T ss_dssp -------BCCEEEEEEESSGG-GSCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSS
T ss_pred -------cCceEEEEECCChH-HCCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCc
Confidence 11223332222222 24556 689999999999999999888877644 5666666544
No 37
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=83.82 E-value=0.3 Score=42.70 Aligned_cols=31 Identities=10% Similarity=0.194 Sum_probs=29.1
Q ss_pred ceEEEEEEEEeCCCceEEEEEeccccccccc
Q 015760 370 SSEYTMKLTLEDPTARIHALLCGKEWVRFQL 400 (401)
Q Consensus 370 ~~~~~~~L~leD~t~~i~~~v~~~da~~f~~ 400 (401)
.|.|.+.+.|.|.||.+.+.++++.|+.|||
T Consensus 72 ~~RYil~~~i~D~TG~~wvt~F~e~ae~ilG 102 (172)
T 3u50_C 72 QVHLMLRAFVQDSTGTIPVMIFDQQSSQLIN 102 (172)
T ss_dssp EEEECEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred eEEEEEEEEEEeCCCCEEEEEEhHHHHHHhC
Confidence 5788899999999999999999999999987
No 38
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=72.52 E-value=38 Score=27.62 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=52.8
Q ss_pred CCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCCccEEEEEecC
Q 015760 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDR 245 (401)
Q Consensus 166 ~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~G~~l~V~~~~ 245 (401)
+=..+.+++.|+++. + ....+.+.+-|||+. +.+..|.
T Consensus 35 ~i~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~----------------------------------------I~~~~W~ 72 (136)
T 4gop_B 35 ELGQLTFVAVVRNIS-R-NATNVAYSVEDGTGQ----------------------------------------IEVRQWL 72 (136)
T ss_dssp BCCEEEEEEEEEEEE-E-CSSEEEEEEECSSCE----------------------------------------EEEEEEC
T ss_pred EEEEEEEEEEEEEEE-e-cCCeEEEEEECCCCC----------------------------------------EEEEEec
Confidence 446889999999998 5 567889999999952 1122222
Q ss_pred cchh---hhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCCChHHHHHh
Q 015760 246 SYEN---FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYM 299 (401)
Q Consensus 246 ~~~~---~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~d~~v~~l~ 299 (401)
..+. .....+++|++|++..- ++...|..+... .+|+.+.+.+...-.+|
T Consensus 73 ~~~~~~~~~~~~~~~g~yVrV~G~-v~~f~g~~qi~~---~~ir~v~d~Nei~~H~L 125 (136)
T 4gop_B 73 DSSSDDSSKASEIRNNVYVRVLGT-LKSFQNRRSISS---GHMRPVIDYNEVMFHRL 125 (136)
T ss_dssp C--------CCSCCTTCEEEEEEE-EEEETTEEEEEE---SEEEECSSHHHHHHHHH
T ss_pred ccCCcccccccccCCCCEEEEEEE-EEEeCCEEEEEE---EEEEECCCccHHHHHHH
Confidence 2111 01456889999987665 344566554331 35666666554333333
No 39
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=71.50 E-value=8.5 Score=31.02 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCEEEEee-------EEEEEecCeeEEEeecC-ceEEEEEe
Q 015760 70 DQLPRVLSPRDLILLKN-------VMIKKHQAELSAVFYKD-SSSFALFD 111 (401)
Q Consensus 70 e~LP~v~~~GDII~l~r-------vki~~~~g~~~~~~~~~-~ss~~lf~ 111 (401)
.++|.+ .+||+|.+|= =++|.|.|-+-+.-+.+ .++|.|=+
T Consensus 14 ~~iP~f-~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRk 62 (114)
T 3r8s_P 14 QDVPSF-RPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRK 62 (114)
T ss_dssp SCCCCC-CTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred cCCCcc-CCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 579999 8999999973 24777888766655544 36777633
No 40
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=70.22 E-value=42 Score=27.19 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=52.0
Q ss_pred ceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCCccEEEEEecCcc
Q 015760 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (401)
Q Consensus 168 ~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~G~~l~V~~~~~~ 247 (401)
..+.+++.|+++. + ....+.+.+=|||++.- .+..|...
T Consensus 32 ~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~~I---------------------------------------~~~~W~~~ 70 (132)
T 3kdf_D 32 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAAPM---------------------------------------DVRQWVDT 70 (132)
T ss_dssp CEEEEEEEEEEEE-E-CSSEEEEEEECSSSSCE---------------------------------------EEEEEC--
T ss_pred EEEEEEEEEEEEE-E-cCCeEEEEEECCCCCEE---------------------------------------EEEEEccC
Confidence 5789999999997 5 57889999999996211 11112111
Q ss_pred hh--hhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCCChHHHHHh
Q 015760 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYM 299 (401)
Q Consensus 248 ~~--~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~d~~v~~l~ 299 (401)
+. .....+++|++|+...- ++..+|..+... .+|+.+.+.+...-.+|
T Consensus 71 ~~~~~~~~~~~~g~yVrV~G~-l~~f~g~~qi~~---~~ir~v~d~Nei~~H~L 120 (132)
T 3kdf_D 71 DDTSSENTVVPPETYVKVAGH-LRSFQNKKSLVA---FKIMPLEDMNEFTTHIL 120 (132)
T ss_dssp -------CCCCTTCEEEEEEE-EEEETTEEEEEE---EEEEECSSTHHHHHHHH
T ss_pred CCcccccccccCCCEEEEEEE-EEeECCEEEEEE---EEEEEcCCccHHHHHHH
Confidence 10 11356889999987665 444556554321 26777777665444444
No 41
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=70.21 E-value=66 Score=29.53 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=53.1
Q ss_pred ceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCccccCCCCcHHhhhcCCCCccEEEEEecCcc
Q 015760 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (401)
Q Consensus 168 ~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~~G~~l~V~~~~~~ 247 (401)
..+.+++.|.++. . ....+.+.+-|+|+.. +.+..|...
T Consensus 72 ~~V~ivG~V~~i~-~-~~~~~~~~L~D~TG~~---------------------------------------I~~k~W~~~ 110 (270)
T 2pi2_A 72 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAAP---------------------------------------MDVRQWVDT 110 (270)
T ss_dssp SEEEEEEEEEEEE-E-CSSEEEEEEECSSSSC---------------------------------------EEEEEECC-
T ss_pred EEEEEEEEEEEEE-e-ccceEEEEEECCCCCE---------------------------------------EEEEEEcCc
Confidence 4789999999997 5 5688899999999520 112222211
Q ss_pred hh--hhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEccCCChHHHHHh
Q 015760 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYM 299 (401)
Q Consensus 248 ~~--~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~~~d~~v~~l~ 299 (401)
+. .....+++|++|++.- +++...|..+.... +|+++.+.+...-.+|
T Consensus 111 ~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~qi~i~---~ir~v~d~nEi~~H~L 160 (270)
T 2pi2_A 111 DDTSSENTVVPPETYVKVAG-HLRSFQNKKSLVAF---KIMPLEDMNEFTTHIL 160 (270)
T ss_dssp ------CCCCCTTCEEEEEE-EEEEETTEEEEEEE---EEEECSCTHHHHHHHH
T ss_pred CcccchhhcCCCCCEEEEEE-EEEecCCeeEEEEE---EEEecCCHhHHHHHHH
Confidence 10 1135688999998775 44455666544322 6777777665434443
No 42
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=68.88 E-value=8.3 Score=30.25 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=26.2
Q ss_pred CCCCCCCCCEEEEeeE------EEEEecCeeEEEeecC-ceEEEEEeC
Q 015760 72 LPRVLSPRDLILLKNV------MIKKHQAELSAVFYKD-SSSFALFDG 112 (401)
Q Consensus 72 LP~v~~~GDII~l~rv------ki~~~~g~~~~~~~~~-~ss~~lf~~ 112 (401)
+|.+ ++||+|++|=- ++|.|.|-+-+.-+.+ .++|.|=+-
T Consensus 1 iP~f-~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki 47 (98)
T 2ftc_K 1 IPEF-YVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNV 47 (98)
T ss_pred CCcc-CCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEe
Confidence 5888 89999999822 2566777655555544 356776443
No 43
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=64.88 E-value=9.7 Score=32.53 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=47.2
Q ss_pred CEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEecCeeEE
Q 015760 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (401)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e---~LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (401)
..|.+.|+|+.... +.+ ...++|=|.|- .-|.|.++.+... .+.....+|++|+++. .|+.|+|+.++
T Consensus 48 ~~V~IvGiVv~~~~-~~~-----~~~ytIDD~TG--~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~rqI 118 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI-YEG-----KHVLTVDDCSG--MVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSEVEL 118 (159)
T ss_dssp CEEEEEEEEEEEEE-ETT-----EEEEEEECSSS--CEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSSCEE
T ss_pred EEEEEEEEEEEEEE-eCC-----EEEEEEecCCC--CeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCEEEE
Confidence 35889999999763 111 25667767653 2389999875411 1122237899999954 67889998877
Q ss_pred Eee
Q 015760 99 VFY 101 (401)
Q Consensus 99 ~~~ 101 (401)
...
T Consensus 119 ~~~ 121 (159)
T 3kf6_A 119 IAQ 121 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 44
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=61.45 E-value=16 Score=30.58 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=28.0
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEecCeeEEEeecC-ceEEEEE
Q 015760 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALF 110 (401)
Q Consensus 70 e~LP~v~~~GDII~l~rv-------ki~~~~g~~~~~~~~~-~ss~~lf 110 (401)
.++|.+ .+||+|.+|=- ++|.|.|-+-+.-+.+ .++|.|=
T Consensus 17 ~diP~F-~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVR 64 (146)
T 3v2d_T 17 TDLPEF-RPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVR 64 (146)
T ss_dssp CCCCCC-CTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEE
T ss_pred ccCCCc-CCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEE
Confidence 579999 89999999743 3567777665555544 3667763
No 45
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=60.13 E-value=23 Score=37.48 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=50.9
Q ss_pred eeHHhhhh----ccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 015760 11 VRIKELAM----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (401)
Q Consensus 11 ~~i~~~~~----~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~r 86 (401)
+++.++.+ ....-|+++|+|+...... .-.+ .+-|.|.+..- +.|.++..-.|+ + .+|.+|-+.|
T Consensus 597 ~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~--~~~~---~vylsD~~~nl--l~Ikf~~~l~eD---~-~~~~~va~sN 665 (738)
T 1miu_A 597 LHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI--GLAP---LVYLSDECLNL--LVVKFGIDLNED---I-KPRVLIAASN 665 (738)
T ss_dssp CCSGGGGSSSCCTTTTEEEEEEEEEEEECCT--TSCC---EEEEECSSSCE--EEEEESSCCCSC---C-CSSCEEEEEE
T ss_pred eeHHHhcCccccCCCCceeEEEEEEEEcccC--cccc---eEEEEcCCCcE--EEEEEecCchhh---C-ccccEEEEee
Confidence 44555543 3567799999999996532 1122 56789999743 677777765565 6 7999999999
Q ss_pred EEEEEec
Q 015760 87 VMIKKHQ 93 (401)
Q Consensus 87 vki~~~~ 93 (401)
+..+...
T Consensus 666 L~~r~~~ 672 (738)
T 1miu_A 666 LQCQPES 672 (738)
T ss_dssp EECCSCC
T ss_pred eEeeccc
Confidence 9988654
No 46
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=49.62 E-value=24 Score=39.06 Aligned_cols=85 Identities=15% Similarity=0.310 Sum_probs=60.2
Q ss_pred ceeeHHhhhhccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCC---CCCCCCCCCEEEEe
Q 015760 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQ---LPRVLSPRDLILLK 85 (401)
Q Consensus 9 ~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~---LP~v~~~GDII~l~ 85 (401)
..++|.++... ...|-+-|-|-+... +.+|......+|.|+|-+. +|.|.+|.++.+. +-.+ +.|+-|+++
T Consensus 6 ~~~~~~~~~~~-~~~~~~~g~v~~~~~-~~~~~~~~~~~~~~td~~~---~~~~k~f~~~~~~~~~~~~~-~~g~~~~~~ 79 (1041)
T 3f2b_A 6 PVRRLETIVEE-ERRVVVQGYVFDAEV-SELKSGRTLLTMKITDYTN---SILVKMFSRDKEDAELMSGV-KKGMWVKVR 79 (1041)
T ss_dssp -CBCGGGCCSC-EEEEEEEEEEEEEEE-EECTTSCEEEEEEEECSSC---EEEEEEECSSHHHHHHHHTC-CTTCEEEEE
T ss_pred CcccHHHhhcc-cceEEEEEEEEEEEE-EEccCCCEEEEEEEEeCCC---CEEEEEeecccchHHHHhcC-CCCCEEEEE
Confidence 45678888543 345888999887653 3455556889999999854 4999999865443 3456 789999996
Q ss_pred -eEEEEEecCeeEEE
Q 015760 86 -NVMIKKHQAELSAV 99 (401)
Q Consensus 86 -rvki~~~~g~~~~~ 99 (401)
++....|.++....
T Consensus 80 g~~~~d~~~~~~~~~ 94 (1041)
T 3f2b_A 80 GSVQNDTFVRDLVII 94 (1041)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeccCCcceEEE
Confidence 66777777765433
No 47
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=46.43 E-value=27 Score=29.67 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=44.4
Q ss_pred cCCCccccHHHHhc-CCCCCceEEEEEEEEEeeCCCccccccCCCceEEEEEEEEeCCCceEEEEEecc
Q 015760 326 WVNVASVTLMKIAT-QLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGK 393 (401)
Q Consensus 326 ~~~~p~ttL~dIL~-~~~~~~kfr~~VRVv~~~P~~~~df~~~~g~~~~~~~L~leD~t~~i~~~v~~~ 393 (401)
-.+-|||=|.-++. .++.+..||+.+-|+. -...+..+.| .|.+...+-|.||.+++.+..+
T Consensus 18 l~s~PFtYL~~l~~~~~~~~~~~kVKafI~t----l~~~l~~~~~--~W~l~a~IsDGS~~LdV~f~~~ 80 (157)
T 3mxn_A 18 LYSPPFVYLSVLMASKPKEVTTVKVKAFIVT----LTGNLSSSGG--IWSITAKVSDGTAYLDVDFVDE 80 (157)
T ss_dssp HHCSSCCCHHHHHHTCCSSCEEEEEEEEEEE----ECSCCBCGGG--SCBCEEEEECSSCEEEEEECHH
T ss_pred cCCCchHHHHHHHhhccCCceEEEEEEEEEE----eccceeecCC--EEEEEEEEeCCceeEEEEeeHH
Confidence 34678988888885 4445556666666655 3444555667 7899999999999999987543
No 48
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=43.53 E-value=16 Score=41.15 Aligned_cols=75 Identities=21% Similarity=0.249 Sum_probs=36.9
Q ss_pred eeHHhhhh-----ccCCEEEEEEEEEEcCCceecCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 015760 11 VRIKELAM-----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (401)
Q Consensus 11 ~~i~~~~~-----~~~~~vnviGVVvd~~~P~~trGtD~~~tl~I~D~s~~~~gl~v~iF~~~~e~LP~v~~~GDII~l~ 85 (401)
++++++.. ..++.|.+.|+|+..+.| .|+..+-++-++|-|.+-. +.|.+|.+..+........|.++.++
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~-~Tk~G~~maf~tleD~tg~---~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRK-PTRSGGMMARFTLSDETGA---LEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-------------CEEEEETTEE---EEEC-------------CTTCEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEe-ecCCCCeEEEEEEEECCCC---EEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 35566642 346779999999999886 4555677899999998753 99999998888887765667777774
Q ss_pred eEEEE
Q 015760 86 NVMIK 90 (401)
Q Consensus 86 rvki~ 90 (401)
.+++
T Consensus 1103 -G~v~ 1106 (1220)
T 2hpi_A 1103 -AEVE 1106 (1220)
T ss_dssp -EEEC
T ss_pred -EEEE
Confidence 4555
No 49
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=37.85 E-value=23 Score=30.34 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCEEEEee-E------EEEEecCeeEEEeecC-ceEEEEEe
Q 015760 70 DQLPRVLSPRDLILLKN-V------MIKKHQAELSAVFYKD-SSSFALFD 111 (401)
Q Consensus 70 e~LP~v~~~GDII~l~r-v------ki~~~~g~~~~~~~~~-~ss~~lf~ 111 (401)
.++|.+ ++||+|++|= + ++|.|.|-+-+.-+.+ .++|.|=+
T Consensus 22 ~diP~F-r~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRk 70 (166)
T 2zjr_M 22 RQLPDF-RPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRK 70 (166)
T ss_dssp CCCCCC-SSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEE
T ss_pred cCCCCc-CCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEE
Confidence 579998 8999999982 2 3678888766555544 36777633
No 50
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=34.02 E-value=93 Score=34.44 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=28.5
Q ss_pred ccccccc-CCceeeeEEEEEEEEe-eCCCC--eEEEEEEcCCCC
Q 015760 159 LSLKDIS-EHRYFDLVCKVFHVSY-DDSKG--LWMLFVWDGTDV 198 (401)
Q Consensus 159 ~~L~di~-~~~f~Dl~~qVv~~~~-~~~~~--~~~L~VwDgT~~ 198 (401)
..|+||. +...+-+.++|.++-. +..++ -++++|+|||+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~ 51 (1041)
T 3f2b_A 8 RRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS 51 (1041)
T ss_dssp BCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE
T ss_pred ccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC
Confidence 6788886 4556778889987763 33333 568899999954
No 51
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=27.30 E-value=65 Score=27.41 Aligned_cols=73 Identities=10% Similarity=0.147 Sum_probs=48.1
Q ss_pred CEEEEEEEEEEcCCceecCCCceEEEEEEE-eCCCC-----------CCCeEEEEecCCCCCCCCCCCCCCEEEEe-eEE
Q 015760 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIV-DDSQQ-----------SPELLVNIFTSSIDQLPRVLSPRDLILLK-NVM 88 (401)
Q Consensus 22 ~~vnviGVVvd~~~P~~trGtD~~~tl~I~-D~s~~-----------~~gl~v~iF~~~~e~LP~v~~~GDII~l~-rvk 88 (401)
.+|.|+|-|..--..+.|....-.++|+|. +.... ..-+.|.+|.+..+.+-.-.+.||-|.+. +++
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 84 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLK 84 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEE
Confidence 468899988764444555545677888886 32221 12399999987555554423679977776 899
Q ss_pred EEEecC
Q 015760 89 IKKHQA 94 (401)
Q Consensus 89 i~~~~g 94 (401)
.+.|.+
T Consensus 85 ~~~~~d 90 (168)
T 3afp_A 85 QRSFET 90 (168)
T ss_dssp EEEEC-
T ss_pred eeeEEC
Confidence 999974
No 52
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=25.66 E-value=1.1e+02 Score=22.75 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=29.9
Q ss_pred ccccc--cCCceeeeEEEEEEEEeeCCCCeEEEEEEcCCCCCC
Q 015760 160 SLKDI--SEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPP 200 (401)
Q Consensus 160 ~L~di--~~~~f~Dl~~qVv~~~~~~~~~~~~L~VwDgT~~p~ 200 (401)
+|+++ ...+|..+.+||+.+. . .+..+.|++-|.+-|..
T Consensus 3 lisevlktskqylsvlaqvvdiq-s-sdknirlkicdnscnqe 43 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQ-S-SDKNIRLKICDNSCNQE 43 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEE-C-CSSCEEEEEECSSCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHhhhh-c-CCCceEEEeecccccce
Confidence 45555 3678999999999998 4 56788999999775544
No 53
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=23.53 E-value=1.7e+02 Score=27.20 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=41.7
Q ss_pred CCCCcHHhhhcCCCC--ccEEEEEecCcchh-----hhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCcceEEcc
Q 015760 221 SSPLDLETLRNFFPV--GTVLRVSTDRSYEN-----FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFS 289 (401)
Q Consensus 221 ~~~l~~~~~~~~p~~--G~~l~V~~~~~~~~-----~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s~i~~l~ 289 (401)
|.++....++.-+.+ |....|.+....-. -|.++-..||.|+.+|+. ++-...|+......++++.
T Consensus 196 GqpI~~~~L~~p~lVkrGq~V~Iva~~gG~~Ist~G~ALenGa~Gd~IRVrNl~---SgkiV~G~V~~~G~Vrv~~ 268 (278)
T 3frn_A 196 GTVLTADMVKDPPDVVKGQVVPAYVDMGSIKVTTFVEVLENGYLGETVRAMNVE---SRKYVFGRVERGPVLRILE 268 (278)
T ss_dssp TCBCBGGGEECCCSBCTTCEEEEEC-------CEEEEESSCBCTTCEEEEEC-----CCCEEEEEEETTTEEEECC
T ss_pred CCeeCHHHcCcceEEeCCCEEEEEEEeCCEEEEEEEEEcccCCCCCEEEEEECC---CCCEEEEEEecCCeEEEEE
Confidence 355666666655555 88777765443321 246778899999999987 4456788888888887653
No 54
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=21.54 E-value=1.8e+02 Score=19.11 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=18.1
Q ss_pred cCCCCCEEEEeeeEEEEeCcEEEEEeec
Q 015760 254 FTATGKWVRIRNMSCQVSSGMWHGLLQS 281 (401)
Q Consensus 254 ~~k~g~wv~l~Nv~~k~~~G~leG~l~~ 281 (401)
.++.||.+.+.. +.++|-|+|....
T Consensus 19 s~~~Gd~i~v~~---~~~~gW~~g~~~~ 43 (59)
T 1yn8_A 19 RLAEGDIVFISY---KHGQGWLVAENES 43 (59)
T ss_dssp CBCTTCEEEEEE---EEETTEEEEECTT
T ss_pred CCCCCCEEEEEE---cCCCCeEEEEECC
Confidence 478999987644 4578889887653
No 55
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2, disease mutation; 1.70A {Mus musculus} PDB: 3im5_A 3im7_A 3qr5_A 3ila_A 3hsm_A
Probab=20.59 E-value=3.2e+02 Score=24.26 Aligned_cols=67 Identities=6% Similarity=0.007 Sum_probs=42.6
Q ss_pred eEEEEEEEeCCCC-CCCeEEEEecCCCCCCCCCCCCCCEEEEeeEE------EEEecCeeEEEeecCceEEEEEe
Q 015760 44 YVCVLKIVDDSQQ-SPELLVNIFTSSIDQLPRVLSPRDLILLKNVM------IKKHQAELSAVFYKDSSSFALFD 111 (401)
Q Consensus 44 ~~~tl~I~D~s~~-~~gl~v~iF~~~~e~LP~v~~~GDII~l~rvk------i~~~~g~~~~~~~~~~ss~~lf~ 111 (401)
+...+.+.|.... ..-.+|.=|.+....=-.| .+||-|.|.+++ ...+.|...+.+....++|-|+.
T Consensus 143 lrv~LgL~d~~~se~swF~I~P~yK~RseGd~V-~~GD~ViL~sv~s~~yLH~S~~~g~~eVn~s~~~T~W~i~p 216 (217)
T 3im6_A 143 LAFDVGLQEDTTGEACWWTIHPASKQRSEGEKV-RVGDDLILVSMSSERYLHLSYGNSSWHVDAAFQQTLWSVAP 216 (217)
T ss_dssp CCEEEEEESCCSSSTTEEEEEESSSCCCTTCBC-BTTCEEEEEETTTCCEEEEEECSSSEEEEEESSCCCEEEEE
T ss_pred cEEEEEeccCCCCcceEEEEEccEeeccCCCce-eeCCEEEEEECCCCceEEeecCCCceEEeeecCCceeEEee
Confidence 5556666666643 3347888787766666667 799999998875 34444554444443446787764
No 56
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=20.25 E-value=73 Score=25.10 Aligned_cols=34 Identities=18% Similarity=-0.019 Sum_probs=0.0
Q ss_pred EEEEEecCcchhhhcccCCCCCEEEEeeeEEEEeCcEEEEEeecCc
Q 015760 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSS 283 (401)
Q Consensus 238 ~l~V~~~~~~~~~~~~~~k~g~wv~l~Nv~~k~~~G~leG~l~~~s 283 (401)
+++|..|.-.++.+.+.++.|+.| ..||+|+..+
T Consensus 54 fi~vv~wgk~AE~~~~yl~KG~~V------------~VeGrL~~r~ 87 (108)
T 3koj_A 54 RLKVVGWGAVAQELQDRCRLNDEV------------VLEGRLRINS 87 (108)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEE------------EEEEEEEEEC
T ss_pred EEEEEEEhHHHHHHHHhCCCCCEE------------EEEEEEEeee
No 57
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=20.07 E-value=2.3e+02 Score=19.89 Aligned_cols=25 Identities=20% Similarity=0.070 Sum_probs=18.5
Q ss_pred ccCCCCCEEEEeeeEEEEeCcEEEEEee
Q 015760 253 YFTATGKWVRIRNMSCQVSSGMWHGLLQ 280 (401)
Q Consensus 253 ~~~k~g~wv~l~Nv~~k~~~G~leG~l~ 280 (401)
-.++.||.|.+.. +.++|-|+|...
T Consensus 22 Ls~~~Gd~i~v~~---~~~~gWw~g~~~ 46 (73)
T 2lcs_A 22 LRLAEGDIVFISY---KHGQGWLVAENE 46 (73)
T ss_dssp CCBCTTCEEEEEE---EETTTEEEEECT
T ss_pred cCCcCCCEEEEEE---EcCCCEEEEEEC
Confidence 3478999987643 457789999865
Done!