BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015762
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HVC|A Chain A, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
pdb|4HVC|B Chain B, Crystal Structure Of Human Prolyl-trna Synthetase In
Complex With Halofuginone And Atp Analogue
Length = 519
Score = 355 bits (911), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 199/476 (41%), Positives = 271/476 (56%), Gaps = 75/476 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
MIEY+DISGCYI+RPWA +IWE ++ FFDAEIKK+ ++NCYFP+FVS + L+KEK H+
Sbjct: 44 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVAD 103
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
FAPEVAWVT+SG+++L PIAIRPTSETVMYP ++KW++ HRDLP+KLNQWCNVVRWEF
Sbjct: 104 FAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK 163
Query: 121 NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAVPVIKGKKSELEN- 176
+P PF+R+REFLWQEGH+AFAT EA +E IL+LY ++YEE LA+PV+KG+K+E E
Sbjct: 164 HPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKF 223
Query: 177 ---------SKFVQIGVMVMVHGDDKGL-----------------------------MLP 198
F+ + G L L
Sbjct: 224 AGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT 283
Query: 199 PKVASVQVIV------IPVPYKDADTQGIFDAC---TATVEKLCEAGIRANSDFR----- 244
+ V +V + +P + A Q + C A E+ EA I +D+R
Sbjct: 284 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLS 343
Query: 245 ----------DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGS 294
DNYSPGWK++HWE+KGVP+R+E+GP+D+ + Q AVRRD G K+ +
Sbjct: 344 VNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENE 403
Query: 295 XXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVE-- 352
+LF A + + + T ++F + L K++ P+C E + E
Sbjct: 404 AETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDW 463
Query: 353 -KDVKARTKG-EMGA----AKTLCSPLE-QPEVPEGTLCFASGKPAKKWTYWGRSY 401
K AR + E GA AK+LC P + E+ G C PAK +T +GRSY
Sbjct: 464 IKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 519
>pdb|1H4Q|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4Q|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg), Atp And Prolinol
pdb|1H4S|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1H4S|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With Trnapro(Cgg) And A Prolyl-Adenylate Analogue
pdb|1HC7|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1HC7|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus
pdb|1H4T|A Chain A, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|B Chain B, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|C Chain C, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
pdb|1H4T|D Chain D, Prolyl-Trna Synthetase From Thermus Thermophilus Complexed
With L-Proline
Length = 477
Score = 274 bits (701), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 234/450 (52%), Gaps = 70/450 (15%)
Query: 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG 60
+ +Y + G ++RP+ +IWE +Q+ D K+ QN YFPLF+ + L+KE +H+EG
Sbjct: 27 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEG 86
Query: 61 FAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS 120
F+PE+A VT +G +LE P+A+RPTSETV+ +SKWIR RDLP LNQW NVVRWE
Sbjct: 87 FSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR 146
Query: 121 NPTPFIRSREFLWQEGHTAFAT---KSEADDEILELYRRIYEEFLAVPVIKGKKSE---- 173
PF+R+ EFLWQEGHTA AT E +L +Y R+ E+ A+PVI+G K+E
Sbjct: 147 T-RPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKF 205
Query: 174 ------------LENSKFVQIGV------------------------------------- 184
+++ K +Q G
Sbjct: 206 AGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRF 265
Query: 185 ---MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241
++M HGDD+GL+LPP++A +QV+++P+ YKD + + +A + L G+R +
Sbjct: 266 IGAIIMTHGDDRGLVLPPRLAPIQVVIVPI-YKDESRERVLEAAQGLRQALLAQGLRVHL 324
Query: 242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSXXXXXXX 301
D RD ++PG+K+ WE+KGVP R+E+GPKDL Q R G K LP +
Sbjct: 325 DDRDQHTPGYKFHEWELKGVPFRVELGPKDLEGGQAVLASR-LGGKETLPLAALPEALPG 383
Query: 302 XXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKG 361
L+ A R+ + V T++ F EA+ Q LA C ++ E+ ++ T
Sbjct: 384 KLDAFHEELYRRALAFREDHTRKVDTYEAFKEAV-QEGFALAFHCGDKACERLIQEET-- 440
Query: 362 EMGAAKTLCSPLEQPEVPEGTLCFASGKPA 391
A T C P E PE C G+P+
Sbjct: 441 ---TATTRCVPFEAE--PEEGFCVRCGRPS 465
>pdb|1NJ1|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Cysteine
Sulfamoyl Adenylate
pdb|1NJ2|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus
pdb|1NJ5|A Chain A, Crystal Structure Of Prolyl-trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Proline
Sulfamoyl Adenylate
pdb|1NJ6|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanothermobacter Thermautotrophicus Bound To Alanine
Sulfamoyl Adenylate
Length = 501
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 140/458 (30%), Positives = 210/458 (45%), Gaps = 75/458 (16%)
Query: 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE 64
Y + G ++ P I + K I + FPL V L KE H++GF E
Sbjct: 58 YPVKGMHVWMPHGFMIRKNTLKIL-RRILDRDHEEVLFPLLVPEDELAKEAIHVKGFEDE 116
Query: 65 VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP 124
V WVT G S L+ +A+RPTSETVMYP F+ W+R H DLP++ Q N R+E + P
Sbjct: 117 VYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRP 176
Query: 125 FIRSREF-LWQEGHTAFATKSEADDEILELYRRIYEEF---LAVPVIKGKK--------- 171
IR RE ++E HT AT SEA++++ E IY+EF L +P + ++
Sbjct: 177 LIRVREITTFKEAHTIHATASEAEEQV-ERAVEIYKEFFNSLGIPYLITRRPPWDKFPGS 235
Query: 172 -------SELENSKFVQIGV---------------------------------------- 184
+ + + K +QIG
Sbjct: 236 EYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSDRVIAS 295
Query: 185 MVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 244
++ +HGD+ GL LPP VA+ QV+++P+ +K A + + +AC +L AG R + D R
Sbjct: 296 VIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA-AEEVMEACRELRSRLEAAGFRVHLDDR 354
Query: 245 DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSXXXXXXXXXX 304
D G KY WEM+GVPLR+EIGP+DL RRD G K+
Sbjct: 355 D-IRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMK 413
Query: 305 XXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILA-PWCDEEEVEKDVKARTKGEM 363
+L A +R ++ I+ +T +E + +++ I++ WC EEE DV+ + + ++
Sbjct: 414 DILENLRTRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVRVDI 473
Query: 364 GAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401
L E GT C G+ A Y R+Y
Sbjct: 474 ---------LGIQEEGSGT-CINCGREAPYRAYLARTY 501
>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
Prolyl- Adenylate
Length = 518
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 92/167 (55%)
Query: 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE 64
Y + GC + RP+ + + + + E K+ I FP + + L+KE DHI+GF E
Sbjct: 42 YPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAE 101
Query: 65 VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP 124
WV K G LE +A+RPTSET +Y FSKW+R ++DLPLK++Q C + R E N P
Sbjct: 102 CFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKP 161
Query: 125 FIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPVIKGKK 171
IR RE W E H AT +A ++ + ++ I F KG+K
Sbjct: 162 LIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQK 208
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 105/248 (42%), Gaps = 35/248 (14%)
Query: 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEA-----G 236
+ + +HGD GL+LPP +A + V++IP+ + Q V ++ + G
Sbjct: 278 LACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLG 337
Query: 237 IRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG--AKIDLPRGS 294
+R + D + S G K ++E+KGVPLRIE+G +DLAN Q V RD G K +P
Sbjct: 338 LRVSIDDDFSKSMGDKLYYYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITE 397
Query: 295 XXXXXXXXXXXXXXSLFVAAKQRRDA---------------CIQIVKTWDEFVEALGQRK 339
+ K DA + K++DE V + + K
Sbjct: 398 VMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAFAFHNSMVTNCKSFDEIVACI-ENK 456
Query: 340 MILAPW------CDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKK 393
LA + D E +K +K E+ +P E V G +C SGKPA
Sbjct: 457 GGLARFPFYTTEADGEVWDKKLKDACSAEIRGH----NPDEN--VLPGEVCALSGKPAVC 510
Query: 394 WTYWGRSY 401
+ Y +SY
Sbjct: 511 YMYCAKSY 518
>pdb|1NJ8|A Chain A, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|B Chain B, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|C Chain C, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
pdb|1NJ8|D Chain D, Crystal Structure Of Prolyl-Trna Synthetase From
Methanocaldococcus Janaschii
Length = 459
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 98/173 (56%), Gaps = 5/173 (2%)
Query: 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE 64
Y I GC + P+ I + + + FP+ + +L KE +HI+GF E
Sbjct: 25 YPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDE 84
Query: 65 VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP 124
V WVT G++ L+V +A+RPTSET +Y W++ H DLP+K+ Q N R+E + P
Sbjct: 85 VYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRP 144
Query: 125 FIRSREFL-WQEGHTAFATKSEADDEILE---LYRRIYEEFLAVPVIKGKKSE 173
IR RE + ++E HTA +TK EA++++ E +Y++ ++ L +P + K+ E
Sbjct: 145 LIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDT-LGIPYLISKRPE 196
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Query: 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241
I ++ +HGD+KGL+LPP VA +QV+++P+ +K + + + EKL + R +
Sbjct: 261 IASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKE-DIVMEKAKEIYEKL-KGKFRVHI 318
Query: 242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDL 290
D RD PG K++ WE+KGVPLRIE+GPKD+ N ++ RRD K +
Sbjct: 319 DDRD-IRPGRKFNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQV 366
>pdb|2I4L|A Chain A, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|B Chain B, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4L|C Chain C, Rhodopseudomonas Palustris Prolyl-trna Synthetase
pdb|2I4M|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4M|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Proams
pdb|2I4N|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4N|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Cysams
pdb|2I4O|A Chain A, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|B Chain B, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
pdb|2I4O|C Chain C, Rhodopseudomonas Palustris Prolyl-Trna Synthetase In
Complex With Atp
Length = 458
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241
+G ++ DD G++ P VA +V ++ + DA T AC +L G+
Sbjct: 344 LGAIIEACHDDNGIIWPEAVAPFRVTILNLKQGDAATDA---ACDQLYRELSAKGVDVLY 400
Query: 242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDL 290
D D + G K++ ++ G+P +I +GP+ LA +V RR +GA+ +L
Sbjct: 401 DDTDQRA-GAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDGARENL 448
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 13/135 (9%)
Query: 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 67
+G Y P + + +++ E + P + L +E + + PE+
Sbjct: 57 AGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPT-LQLADLWRESGRYDAYGPEMLR 115
Query: 68 VTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT---- 123
+ + +L PT+E ++ F +I+ ++ LPL L ++W+F +
Sbjct: 116 IADRHKREL----LYGPTNEEMITEIFRAYIKSYKSLPLNLYH----IQWKFRDEQRPRF 167
Query: 124 PFIRSREFLWQEGHT 138
+R REFL ++ ++
Sbjct: 168 GVMRGREFLMKDAYS 182
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 12/182 (6%)
Query: 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAW 67
+G Y P A + E ++ E +K+ P + P L KE E + P +
Sbjct: 37 AGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALL-PAELWKESGRYETYGPNLYR 95
Query: 68 VTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR 127
+ + D + PT E I ++ LPL L Q R E + + +R
Sbjct: 96 LKDRNDRDY----ILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLR 151
Query: 128 SREFLWQEGHTAFATKSEADDEILEL---YRRIYE----EFLAVPVIKGKKSELENSKFV 180
REF+ ++G++ A ++ D + Y RI+E EF A+ G ++ +F+
Sbjct: 152 GREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEFM 211
Query: 181 QI 182
I
Sbjct: 212 AI 213
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241
+ +V + D++G+ P +A + V+ + KD + A + EAG
Sbjct: 449 LSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAM---MTEAGYEVLV 505
Query: 242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPK 270
D R N G K++ ++ G P+RI +G K
Sbjct: 506 DDR-NERAGVKFADADLIGCPIRITVGKK 533
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78
+I+ ++ F +++K+ + Q P F+ VL ++ H + + A T S E+
Sbjct: 272 TIFRELEVFVRSKLKEYQYQEVKGP-FMMDRVLWEKTGHWDNYKD--AMFTTSSENR--- 325
Query: 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP-FIRSREFLWQEGH 137
I+P + F++ ++ +RDLPL++ ++ + R E S +R R F + H
Sbjct: 326 EYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAH 385
Query: 138 TAFATKSEADDEILELYRRIYEEF 161
F T+ + DE+ R +Y+ +
Sbjct: 386 I-FCTEEQIRDEVNGCIRLVYDMY 408
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 197 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 256
P +A VQV+++ + D+Q + +KL AGIR +D R N G+K
Sbjct: 533 FPTWLAPVQVVIMNI----TDSQSEY--VNELTQKLSNAGIRVKADLR-NEKIGFKIREH 585
Query: 257 EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKI 288
++ VP + G K++ + +V AVR G +
Sbjct: 586 TLRRVPYMLVCGDKEVESGKV-AVRTRRGKDL 616
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 13 MRPWAISIWETMQKFFDAEIKKMKIQNCY---FPLFVSPTVLQK----EKDHIEGFAPEV 65
+ P ++ K F+ I+ MK+Q + F V+P + +K + H E +A ++
Sbjct: 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDM 111
Query: 66 AWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TP 124
V + E E ++P + F K R + +LPL+ + + + R E S +
Sbjct: 112 FKVETTDEEKEEY--GLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSG 169
Query: 125 FIRSREFLWQEGHTAFATKSEADDEI---LELYRRIYEEFLAVPVIKGKKSELENSKFVQ 181
R R+F +GH F T S+ EI L+L +Y + P +KG S E++ F+
Sbjct: 170 LTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDIVYNKIF--PFVKG-GSGAESNYFIN 225
Query: 182 IGV 184
Sbjct: 226 FST 228
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78
+I+ ++ F +++K+ + Q P F+ VL ++ H + + A T S E+
Sbjct: 31 TIFRELEVFVRSKLKEYQYQEVKGP-FMMDRVLWEKTGHWDNYKD--AMFTTSSENR--- 84
Query: 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTP-FIRSREFLWQEGH 137
I+P + F++ ++ +RDLPL++ ++ + R E S +R R F + H
Sbjct: 85 EYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAH 144
Query: 138 TAFATKSEADDEILELYRRIYEEF 161
F T+ + DE+ R +Y+ +
Sbjct: 145 I-FCTEEQIRDEVNGCIRLVYDMY 167
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 196 MLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 255
P +A VQV+++ + D+Q + +KL AGIR +D R N G+K
Sbjct: 291 FFPTWLAPVQVVIMNI----TDSQSEY--VNELTQKLSNAGIRVKADLR-NEKIGFKIRE 343
Query: 256 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKI 288
++ VP + G K++ + +V AVR G +
Sbjct: 344 HTLRRVPYMLVCGDKEVESGKV-AVRTRRGKDL 375
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 197 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW 256
P +A QV +IPV + D +D ++L G+R + D R N G+K
Sbjct: 539 FPTWLAPKQVQIIPV---NVDLH--YDYARQLQDELKSQGVRVSIDDR-NEKMGYKIREA 592
Query: 257 EMKGVPLRIEIGPKDLANDQV 277
+M+ +P +I +G K++ N+QV
Sbjct: 593 QMQKIPYQIVVGDKEVENNQV 613
>pdb|3HZQ|A Chain A, Structure Of A Tetrameric Mscl In An Expanded Intermediate
State
Length = 114
Score = 31.6 bits (70), Expect = 0.87, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 363 MGAA--KTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401
MGAA K +CS +E +P F S AK+W++WG Y
Sbjct: 43 MGAAFNKIICSLVENIIMPLIGKIFGSVDFAKEWSFWGIKY 83
>pdb|1UF2|K Chain K, The Atomic Structure Of Rice Dwarf Virus (Rdv)
Length = 506
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 161 FLAVPVIKGK-KSELENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQ 219
P I+G + + +S +I +VMV G G M P V+S Q V V D D
Sbjct: 106 LFNTPFIQGAFRHRIISSMGPEISYLVMVIGPPSGFMDTPNVSSAQSSVHTVSNADVDLN 165
Query: 220 GI--FDACTATVEKLCEA 235
I ++ A KL A
Sbjct: 166 DIIAINSTMAKSTKLVSA 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,279,135
Number of Sequences: 62578
Number of extensions: 500666
Number of successful extensions: 1092
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 28
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)