Query 015762
Match_columns 401
No_of_seqs 267 out of 1756
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:20:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4163 Prolyl-tRNA synthetase 100.0 2E-119 4E-124 871.1 27.2 399 1-401 81-551 (551)
2 PRK08661 prolyl-tRNA synthetas 100.0 1.6E-97 3E-102 766.4 43.6 391 1-401 27-477 (477)
3 TIGR00408 proS_fam_I prolyl-tR 100.0 1.4E-96 3E-101 757.9 41.1 392 1-401 21-472 (472)
4 COG0442 ProS Prolyl-tRNA synth 100.0 7.7E-76 1.7E-80 597.0 15.7 391 1-401 31-499 (500)
5 PRK12325 prolyl-tRNA synthetas 100.0 3.4E-58 7.3E-63 470.2 32.0 285 6-300 35-438 (439)
6 PRK09194 prolyl-tRNA synthetas 100.0 6.6E-57 1.4E-61 474.1 33.2 286 5-300 34-561 (565)
7 cd00862 ProRS_anticodon_zinc P 100.0 1.8E-56 3.9E-61 412.7 25.6 202 194-401 1-202 (202)
8 TIGR00409 proS_fam_II prolyl-t 100.0 7.1E-56 1.5E-60 463.9 32.7 287 5-301 34-567 (568)
9 PRK03991 threonyl-tRNA synthet 100.0 1.6E-53 3.4E-58 448.4 29.1 290 1-304 208-593 (613)
10 PRK14799 thrS threonyl-tRNA sy 100.0 6.5E-53 1.4E-57 437.9 30.1 283 5-305 155-533 (545)
11 PRK12444 threonyl-tRNA synthet 100.0 1.7E-51 3.7E-56 439.3 29.4 281 5-304 261-636 (639)
12 TIGR00418 thrS threonyl-tRNA s 100.0 6.6E-51 1.4E-55 429.6 29.7 283 1-301 181-561 (563)
13 PLN02837 threonine-tRNA ligase 100.0 7.1E-51 1.5E-55 431.0 28.8 281 6-305 235-610 (614)
14 PRK12305 thrS threonyl-tRNA sy 100.0 2.7E-50 5.8E-55 425.9 29.0 284 5-305 193-571 (575)
15 PLN02908 threonyl-tRNA synthet 100.0 2.4E-49 5.2E-54 424.3 30.4 282 5-305 308-684 (686)
16 PRK00413 thrS threonyl-tRNA sy 100.0 1.4E-48 3.1E-53 417.5 29.5 284 5-305 257-634 (638)
17 PRK04173 glycyl-tRNA synthetas 100.0 1.9E-48 4.1E-53 398.9 29.0 289 4-302 24-455 (456)
18 COG0124 HisS Histidyl-tRNA syn 100.0 1.1E-46 2.4E-51 378.7 27.2 281 1-303 1-428 (429)
19 COG0441 ThrS Threonyl-tRNA syn 100.0 3.8E-44 8.2E-49 371.3 23.1 281 6-305 208-582 (589)
20 CHL00201 syh histidine-tRNA sy 100.0 3.1E-42 6.8E-47 352.0 30.5 283 1-306 1-421 (430)
21 KOG2324 Prolyl-tRNA synthetase 100.0 4.4E-42 9.5E-47 327.4 23.6 284 5-299 39-426 (457)
22 PLN02530 histidine-tRNA ligase 100.0 1E-39 2.2E-44 338.0 26.1 271 1-295 67-486 (487)
23 KOG1637 Threonyl-tRNA syntheta 100.0 4.9E-40 1.1E-44 322.1 17.8 278 7-303 181-555 (560)
24 cd00772 ProRS_core Prolyl-tRNA 100.0 1.8E-39 4E-44 311.3 18.9 176 1-177 15-194 (264)
25 PRK00037 hisS histidyl-tRNA sy 100.0 1.2E-37 2.6E-42 317.0 29.1 273 1-303 1-411 (412)
26 PLN02734 glycyl-tRNA synthetas 100.0 1E-37 2.2E-42 326.1 24.4 289 4-304 95-662 (684)
27 TIGR00389 glyS_dimeric glycyl- 100.0 2.1E-37 4.5E-42 319.4 26.0 290 4-302 23-550 (551)
28 PRK14894 glycyl-tRNA synthetas 100.0 4.4E-37 9.6E-42 309.1 25.9 292 4-303 26-537 (539)
29 cd00778 ProRS_core_arch_euk Pr 100.0 1.3E-37 2.8E-42 298.3 14.7 177 1-177 15-194 (261)
30 cd00779 ProRS_core_prok Prolyl 100.0 1.6E-37 3.4E-42 296.7 14.1 158 5-168 18-178 (255)
31 PRK12420 histidyl-tRNA synthet 100.0 1.8E-35 3.9E-40 301.9 27.4 275 1-295 1-422 (423)
32 PLN02972 Histidyl-tRNA synthet 100.0 2.1E-35 4.6E-40 312.3 28.4 275 4-304 327-761 (763)
33 cd00771 ThrRS_core Threonyl-tR 100.0 4.9E-36 1.1E-40 292.7 18.2 151 5-162 17-171 (298)
34 COG0423 GRS1 Glycyl-tRNA synth 100.0 4.2E-35 9.2E-40 293.4 24.2 292 4-304 26-552 (558)
35 TIGR00442 hisS histidyl-tRNA s 100.0 6.5E-34 1.4E-38 288.3 27.9 259 5-285 1-397 (397)
36 KOG1936 Histidyl-tRNA syntheta 100.0 8.6E-35 1.9E-39 283.2 20.0 279 3-305 59-517 (518)
37 cd00770 SerRS_core Seryl-tRNA 100.0 1.1E-34 2.4E-39 282.9 15.3 189 6-204 40-296 (297)
38 TIGR00414 serS seryl-tRNA synt 100.0 4.4E-33 9.5E-38 282.7 17.6 189 6-204 161-417 (418)
39 PRK05431 seryl-tRNA synthetase 100.0 3.6E-33 7.8E-38 283.9 16.7 190 6-205 158-416 (425)
40 TIGR00415 serS_MJ seryl-tRNA s 100.0 1.6E-32 3.5E-37 277.8 16.7 163 1-166 206-398 (520)
41 PRK00960 seryl-tRNA synthetase 100.0 2.2E-30 4.7E-35 265.7 14.0 162 1-165 206-397 (517)
42 KOG2298 Glycyl-tRNA synthetase 100.0 1.9E-29 4.2E-34 248.0 13.4 294 4-305 32-594 (599)
43 PF00587 tRNA-synt_2b: tRNA sy 100.0 2.8E-29 6E-34 226.3 11.0 141 20-167 1-147 (173)
44 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 9E-28 1.9E-32 226.0 13.2 153 17-171 1-155 (235)
45 PRK12292 hisZ ATP phosphoribos 99.9 2.4E-26 5.1E-31 232.6 22.3 149 4-162 3-152 (391)
46 cd02426 Pol_gamma_b_Cterm C-te 99.9 2.7E-25 5.8E-30 190.5 14.3 116 186-304 10-127 (128)
47 cd00774 GlyRS-like_core Glycyl 99.9 2.5E-25 5.5E-30 212.5 9.4 143 4-162 18-166 (254)
48 PLN02678 seryl-tRNA synthetase 99.9 1.6E-24 3.5E-29 220.0 14.5 190 8-205 164-424 (448)
49 PF09180 ProRS-C_1: Prolyl-tRN 99.9 7.3E-25 1.6E-29 166.8 6.8 68 328-401 1-68 (68)
50 PRK12421 ATP phosphoribosyltra 99.9 2.8E-23 6E-28 209.9 15.1 149 4-162 7-155 (392)
51 TIGR00443 hisZ_biosyn_reg ATP 99.9 4.5E-22 9.8E-27 195.8 13.5 141 11-162 1-141 (314)
52 PLN02320 seryl-tRNA synthetase 99.9 5E-22 1.1E-26 203.0 13.6 150 7-166 220-379 (502)
53 cd00773 HisRS-like_core Class 99.9 3.3E-21 7.2E-26 184.8 14.4 211 18-267 2-217 (261)
54 PRK12293 hisZ ATP phosphoribos 99.9 5.1E-21 1.1E-25 185.2 14.4 138 2-162 3-140 (281)
55 PF13393 tRNA-synt_His: Histid 99.8 1.6E-20 3.6E-25 184.2 13.6 142 9-162 1-143 (311)
56 COG0172 SerS Seryl-tRNA synthe 99.8 5.8E-20 1.2E-24 184.0 14.6 151 6-166 162-319 (429)
57 cd00858 GlyRS_anticodon GlyRS 99.8 3.2E-18 6.9E-23 145.5 14.2 103 195-303 18-120 (121)
58 PF03129 HGTP_anticodon: Antic 99.8 2.4E-18 5.2E-23 139.3 10.7 93 205-301 1-93 (94)
59 PRK12295 hisZ ATP phosphoribos 99.8 2.7E-18 5.9E-23 172.3 13.4 127 21-162 7-134 (373)
60 cd00861 ProRS_anticodon_short 99.7 2.3E-17 5.1E-22 133.2 11.2 93 203-299 1-93 (94)
61 KOG2509 Seryl-tRNA synthetase 99.7 3.7E-17 8E-22 161.1 12.4 190 7-204 172-432 (455)
62 PRK14938 Ser-tRNA(Thr) hydrola 99.7 8.3E-17 1.8E-21 158.5 14.3 114 180-300 251-364 (387)
63 COG3705 HisZ ATP phosphoribosy 99.7 1.4E-16 3.1E-21 158.3 11.5 148 3-162 2-149 (390)
64 cd00860 ThrRS_anticodon ThrRS 99.6 1.5E-15 3.3E-20 121.5 11.7 90 203-299 1-90 (91)
65 cd00738 HGTP_anticodon HGTP an 99.6 2.7E-14 5.8E-19 114.9 12.0 93 203-299 1-93 (94)
66 TIGR02367 PylS pyrrolysyl-tRNA 99.5 1.1E-13 2.4E-18 138.8 12.9 134 17-166 238-373 (453)
67 cd00768 class_II_aaRS-like_cor 99.5 1.8E-13 3.9E-18 125.7 12.6 131 20-162 1-133 (211)
68 PRK12294 hisZ ATP phosphoribos 99.4 1.1E-12 2.5E-17 126.1 12.4 123 18-162 7-130 (272)
69 PRK09537 pylS pyrolysyl-tRNA s 99.4 1.9E-12 4.2E-17 130.2 12.1 130 21-166 206-337 (417)
70 cd00859 HisRS_anticodon HisRS 99.3 2.6E-11 5.5E-16 96.0 11.1 88 205-299 3-90 (91)
71 PRK04172 pheS phenylalanyl-tRN 99.3 1.5E-11 3.2E-16 128.1 9.2 141 8-162 223-402 (489)
72 COG0442 ProS Prolyl-tRNA synth 99.1 6.1E-11 1.3E-15 122.1 6.8 115 180-299 383-498 (500)
73 PRK09350 poxB regulator PoxA; 98.9 3.1E-09 6.8E-14 104.3 8.7 124 17-159 4-129 (306)
74 PTZ00326 phenylalanyl-tRNA syn 98.8 1.7E-08 3.7E-13 103.8 11.4 146 12-162 222-409 (494)
75 cd00669 Asp_Lys_Asn_RS_core As 98.8 2.8E-08 6.2E-13 95.8 11.2 121 19-161 2-122 (269)
76 PRK07080 hypothetical protein; 98.8 8.2E-08 1.8E-12 92.9 13.2 151 5-166 34-212 (317)
77 cd00776 AsxRS_core Asx tRNA sy 98.4 2.5E-06 5.4E-11 84.5 10.9 119 17-159 23-142 (322)
78 KOG1035 eIF-2alpha kinase GCN2 98.4 6.7E-06 1.4E-10 91.0 15.0 130 11-160 925-1054(1351)
79 cd00777 AspRS_core Asp tRNA sy 98.4 1.7E-06 3.7E-11 84.0 9.3 120 19-161 2-122 (280)
80 PF00152 tRNA-synt_2: tRNA syn 98.3 5.2E-06 1.1E-10 82.6 12.1 127 17-161 21-147 (335)
81 TIGR00462 genX lysyl-tRNA synt 98.3 3.1E-06 6.8E-11 83.1 10.2 122 19-159 2-124 (304)
82 PRK06462 asparagine synthetase 98.2 9.8E-06 2.1E-10 80.7 10.9 127 17-159 29-156 (335)
83 cd00775 LysRS_core Lys_tRNA sy 98.2 1.5E-05 3.2E-10 79.2 11.6 123 17-161 7-129 (329)
84 COG2269 Truncated, possibly in 98.2 3.4E-06 7.4E-11 80.1 6.1 131 11-158 5-139 (322)
85 TIGR00458 aspS_arch aspartyl-t 98.1 2.1E-05 4.6E-10 80.8 11.6 120 16-159 131-251 (428)
86 TIGR00459 aspS_bact aspartyl-t 98.1 2.5E-05 5.3E-10 82.8 11.3 123 17-163 137-261 (583)
87 PRK00484 lysS lysyl-tRNA synth 98.1 3.1E-05 6.7E-10 80.9 11.9 123 16-161 170-293 (491)
88 PLN02903 aminoacyl-tRNA ligase 98.1 2.4E-05 5.2E-10 83.4 10.8 123 17-162 202-326 (652)
89 PTZ00417 lysine-tRNA ligase; P 98.0 3.6E-05 7.8E-10 81.5 11.5 122 17-160 252-373 (585)
90 PRK00476 aspS aspartyl-tRNA sy 98.0 2.7E-05 5.9E-10 82.8 10.4 122 17-162 140-263 (588)
91 PTZ00385 lysyl-tRNA synthetase 98.0 4E-05 8.7E-10 81.7 11.5 123 16-161 231-354 (659)
92 PRK05159 aspC aspartyl-tRNA sy 98.0 5.2E-05 1.1E-09 78.2 11.8 120 16-159 134-255 (437)
93 PLN02502 lysyl-tRNA synthetase 98.0 5.1E-05 1.1E-09 80.1 11.3 123 17-161 228-350 (553)
94 TIGR00499 lysS_bact lysyl-tRNA 98.0 5.1E-05 1.1E-09 79.3 11.1 124 16-161 170-293 (496)
95 PF01409 tRNA-synt_2d: tRNA sy 98.0 5.5E-05 1.2E-09 72.1 10.2 135 17-161 15-153 (247)
96 PRK00488 pheS phenylalanyl-tRN 97.9 0.0001 2.2E-09 72.9 12.0 131 13-161 102-236 (339)
97 PRK03932 asnC asparaginyl-tRNA 97.9 8.5E-05 1.9E-09 76.9 11.5 124 17-159 132-259 (450)
98 PRK12820 bifunctional aspartyl 97.9 8.3E-05 1.8E-09 80.1 11.1 120 17-159 155-275 (706)
99 TIGR00457 asnS asparaginyl-tRN 97.9 8.3E-05 1.8E-09 77.0 10.6 125 17-160 135-263 (453)
100 PF12745 HGTP_anticodon2: Anti 97.9 0.00018 4E-09 69.4 12.0 99 203-306 5-109 (273)
101 PRK12445 lysyl-tRNA synthetase 97.8 0.00012 2.6E-09 76.7 11.3 123 16-160 182-304 (505)
102 PLN02850 aspartate-tRNA ligase 97.8 0.00012 2.6E-09 77.1 10.3 119 17-159 224-344 (530)
103 COG0017 AsnS Aspartyl/asparagi 97.7 0.00035 7.7E-09 70.9 12.0 107 17-148 133-240 (435)
104 TIGR00468 pheS phenylalanyl-tR 97.7 0.00027 5.8E-09 69.2 10.9 130 16-162 69-202 (294)
105 PRK02983 lysS lysyl-tRNA synth 97.7 0.00015 3.2E-09 82.4 9.8 123 17-161 769-891 (1094)
106 COG0173 AspS Aspartyl-tRNA syn 97.7 0.00039 8.4E-09 71.9 11.4 122 17-164 140-265 (585)
107 PLN02603 asparaginyl-tRNA synt 97.6 0.00025 5.5E-09 74.9 10.2 124 17-159 225-373 (565)
108 cd00496 PheRS_alpha_core Pheny 97.6 0.0012 2.6E-08 61.7 13.1 121 21-162 3-132 (218)
109 PTZ00425 asparagine-tRNA ligas 97.5 0.00059 1.3E-08 72.2 11.3 124 17-160 214-396 (586)
110 PLN02221 asparaginyl-tRNA synt 97.5 0.00056 1.2E-08 72.4 10.7 33 17-49 170-202 (572)
111 PLN02532 asparagine-tRNA synth 97.4 0.00075 1.6E-08 71.9 10.3 33 17-49 234-266 (633)
112 PTZ00401 aspartyl-tRNA synthet 97.4 0.00078 1.7E-08 71.1 9.7 121 17-160 212-333 (550)
113 PLN02853 Probable phenylalanyl 97.0 0.0058 1.3E-07 63.3 11.6 140 16-162 218-394 (492)
114 COG0016 PheS Phenylalanyl-tRNA 97.0 0.0053 1.2E-07 60.6 10.7 136 12-162 104-244 (335)
115 TIGR00470 sepS O-phosphoseryl- 96.7 0.0041 8.9E-08 63.6 7.1 79 79-162 182-260 (533)
116 KOG2411 Aspartyl-tRNA syntheta 96.4 0.0099 2.1E-07 60.8 7.8 121 17-160 177-299 (628)
117 COG1190 LysU Lysyl-tRNA synthe 96.4 0.014 3.1E-07 60.1 8.7 122 17-160 179-300 (502)
118 KOG1885 Lysyl-tRNA synthetase 96.0 0.011 2.4E-07 60.0 5.5 108 17-146 224-331 (560)
119 KOG0554 Asparaginyl-tRNA synth 96.0 0.024 5.1E-07 56.7 7.6 109 15-143 129-241 (446)
120 KOG0556 Aspartyl-tRNA syntheta 95.7 0.015 3.3E-07 58.1 5.1 121 18-161 228-349 (533)
121 PRK09616 pheT phenylalanyl-tRN 95.4 0.13 2.8E-06 54.8 11.2 128 19-162 359-490 (552)
122 PF09181 ProRS-C_2: Prolyl-tRN 95.1 0.047 1E-06 40.1 4.6 53 328-401 15-68 (68)
123 cd00769 PheRS_beta_core Phenyl 93.7 0.12 2.7E-06 47.3 5.4 88 22-118 3-91 (198)
124 KOG2784 Phenylalanyl-tRNA synt 92.2 0.21 4.6E-06 49.5 4.9 132 21-162 214-385 (483)
125 PLN02788 phenylalanine-tRNA sy 89.5 3.4 7.3E-05 42.3 10.7 106 17-140 66-179 (402)
126 PRK06253 O-phosphoseryl-tRNA s 89.0 0.79 1.7E-05 48.0 5.9 39 79-118 183-221 (529)
127 KOG0555 Asparaginyl-tRNA synth 86.8 1.8 3.8E-05 43.7 6.6 120 18-161 243-362 (545)
128 COG2024 Phenylalanyl-tRNA synt 85.0 0.33 7.2E-06 48.4 0.6 34 19-53 48-81 (536)
129 TIGR00471 pheT_arch phenylalan 84.8 2.1 4.5E-05 45.8 6.5 128 19-162 362-492 (551)
130 PLN02265 probable phenylalanyl 81.6 2.7 5.9E-05 45.3 5.9 131 19-162 397-529 (597)
131 COG1592 Rubrerythrin [Energy p 76.1 3.1 6.8E-05 37.2 3.6 51 302-395 113-163 (166)
132 TIGR00469 pheS_mito phenylalan 74.5 22 0.00047 37.0 9.6 107 22-141 45-166 (460)
133 CHL00192 syfB phenylalanyl-tRN 66.9 10 0.00023 41.7 5.8 85 19-117 398-482 (704)
134 PRK00629 pheT phenylalanyl-tRN 60.9 18 0.00039 40.4 6.4 92 17-117 485-576 (791)
135 TIGR00559 pdxJ pyridoxine 5'-p 60.4 25 0.00055 33.2 6.3 65 201-269 82-152 (237)
136 cd00003 PNPsynthase Pyridoxine 60.0 27 0.00058 33.0 6.3 64 201-268 82-151 (234)
137 COG0072 PheT Phenylalanyl-tRNA 59.8 17 0.00036 39.8 5.7 92 18-118 350-442 (650)
138 PRK05265 pyridoxine 5'-phospha 58.4 27 0.00059 33.1 6.1 69 201-273 85-159 (239)
139 TIGR00472 pheT_bact phenylalan 52.7 32 0.00068 38.6 6.6 84 26-116 498-581 (798)
140 PF03740 PdxJ: Pyridoxal phosp 51.4 26 0.00057 33.2 4.8 63 201-267 83-151 (239)
141 PHA02278 thioredoxin-like prot 49.9 14 0.0003 30.2 2.4 25 326-350 2-30 (103)
142 cd05569 PTS_IIB_fructose PTS_I 48.1 1.4E+02 0.0031 23.8 8.8 77 222-304 15-92 (96)
143 PRK10427 putative PTS system f 40.2 2.2E+02 0.0047 23.7 8.9 82 223-309 20-102 (114)
144 TIGR00106 uncharacterized prot 39.8 65 0.0014 26.1 4.9 39 204-245 3-41 (97)
145 cd02989 Phd_like_TxnDC9 Phosdu 38.4 37 0.00081 27.9 3.4 29 320-348 4-36 (113)
146 PF01910 DUF77: Domain of unkn 37.8 83 0.0018 25.1 5.2 37 205-244 2-38 (92)
147 KOG2848 1-acyl-sn-glycerol-3-p 37.8 2.8E+02 0.0061 26.8 9.3 74 208-283 137-228 (276)
148 COG0205 PfkA 6-phosphofructoki 37.6 3.1E+02 0.0068 27.6 10.3 109 223-344 81-194 (347)
149 COG0011 Uncharacterized conser 37.1 74 0.0016 26.1 4.7 39 204-245 5-43 (100)
150 COG3769 Predicted hydrolase (H 35.8 2.4E+02 0.0051 26.8 8.3 42 224-267 27-68 (274)
151 PRK10474 putative PTS system f 33.1 2.3E+02 0.005 22.2 7.0 80 225-309 3-83 (88)
152 cd02948 TRX_NDPK TRX domain, T 31.7 45 0.00097 26.6 2.7 25 324-348 3-31 (102)
153 TIGR02482 PFKA_ATP 6-phosphofr 31.5 4.4E+02 0.0096 25.8 10.1 74 224-306 79-152 (301)
154 PF10367 Vps39_2: Vacuolar sor 30.9 96 0.0021 24.7 4.6 20 289-308 23-42 (109)
155 PF01520 Amidase_3: N-acetylmu 30.8 1.8E+02 0.004 25.3 6.8 55 219-273 24-80 (175)
156 COG0854 PdxJ Pyridoxal phospha 30.3 1.2E+02 0.0026 28.6 5.4 63 201-267 83-151 (243)
157 PRK14072 6-phosphofructokinase 30.1 3.5E+02 0.0075 27.9 9.5 113 224-344 91-216 (416)
158 cd02696 MurNAc-LAA N-acetylmur 30.1 2.3E+02 0.0049 24.7 7.3 54 219-272 25-80 (172)
159 COG5019 CDC3 Septin family pro 29.0 6.3E+02 0.014 25.7 11.9 114 206-321 163-294 (373)
160 cd02987 Phd_like_Phd Phosducin 28.9 1E+02 0.0022 27.6 4.8 46 301-349 46-98 (175)
161 cd02549 Peptidase_C39A A sub-f 27.5 2.8E+02 0.0061 22.8 7.2 66 227-297 48-128 (141)
162 PF12146 Hydrolase_4: Putative 27.2 2.2E+02 0.0047 21.8 5.8 42 197-243 9-50 (79)
163 PRK10319 N-acetylmuramoyl-l-al 27.2 5.3E+02 0.011 25.1 9.8 54 219-272 82-137 (287)
164 PLN03194 putative disease resi 26.8 72 0.0016 29.2 3.4 59 203-267 26-87 (187)
165 PF04052 TolB_N: TolB amino-te 26.4 1.6E+02 0.0034 23.6 5.2 67 201-267 10-81 (105)
166 cd03003 PDI_a_ERdj5_N PDIa fam 26.4 67 0.0015 25.2 2.9 26 322-348 3-32 (101)
167 COG1852 Uncharacterized conser 25.5 22 0.00049 32.5 -0.1 29 328-356 79-108 (209)
168 PRK05137 tolB translocation pr 25.5 2.8E+02 0.0061 28.2 8.0 127 200-327 31-173 (435)
169 PF08357 SEFIR: SEFIR domain; 24.0 1.5E+02 0.0032 25.3 4.8 34 206-243 3-37 (150)
170 TIGR02883 spore_cwlD N-acetylm 23.7 3.1E+02 0.0066 24.6 7.0 54 219-272 26-95 (189)
171 PRK04792 tolB translocation pr 22.6 5.1E+02 0.011 26.7 9.3 125 199-325 30-188 (448)
172 PF02780 Transketolase_C: Tran 22.2 1.8E+02 0.0038 24.0 4.8 31 204-241 10-40 (124)
173 PRK12421 ATP phosphoribosyltra 22.1 2E+02 0.0044 29.2 6.1 49 205-268 334-382 (392)
174 KOG3102 Uncharacterized conser 22.0 1.5E+02 0.0033 27.6 4.5 75 76-161 126-200 (269)
175 PF14116 YyzF: YyzF-like prote 21.6 51 0.0011 23.2 1.1 14 382-395 34-47 (48)
176 cd02952 TRP14_like Human TRX-r 21.5 73 0.0016 26.8 2.3 25 324-348 5-42 (119)
177 KOG0190 Protein disulfide isom 21.5 2.3E+02 0.0049 30.0 6.3 112 218-348 270-398 (493)
178 cd02957 Phd_like Phosducin (Ph 21.5 86 0.0019 25.4 2.7 29 320-349 4-39 (113)
179 PRK04043 tolB translocation pr 21.3 7.2E+02 0.016 25.4 10.0 123 201-326 28-161 (419)
180 PRK00771 signal recognition pa 21.2 7.5E+02 0.016 25.7 10.0 28 238-268 239-266 (437)
181 KOG3859 Septins (P-loop GTPase 21.1 73 0.0016 31.2 2.4 64 206-271 177-242 (406)
182 PRK03202 6-phosphofructokinase 20.6 8.2E+02 0.018 24.2 9.8 77 223-309 80-156 (320)
183 PTZ00051 thioredoxin; Provisio 20.4 1.1E+02 0.0023 23.6 3.0 28 322-349 2-33 (98)
184 PTZ00222 60S ribosomal protein 20.3 5.4E+02 0.012 24.8 7.9 48 253-300 168-220 (263)
185 PRK14031 glutamate dehydrogena 20.2 6.1E+02 0.013 26.5 9.1 87 227-317 326-416 (444)
186 PRK12339 2-phosphoglycerate ki 20.1 3E+02 0.0065 25.1 6.2 102 223-333 84-189 (197)
187 TIGR02861 SASP_H small acid-so 20.1 1E+02 0.0022 22.6 2.5 36 259-296 21-57 (58)
No 1
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-119 Score=871.09 Aligned_cols=399 Identities=67% Similarity=1.212 Sum_probs=387.1
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+|||+++|||+++|++++||+.|+.+++..+++.|++++|||+|++.+++++++.|+++|+||++|||..|+.+|++++
T Consensus 81 mieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepi 160 (551)
T KOG4163|consen 81 MIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPI 160 (551)
T ss_pred hheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
++|||||+.|+++|++|++||||||+|+|||+||.|||.+++.||+|+|||+|||+||+|++.++|++| ||++|.++
T Consensus 161 aiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~v 240 (551)
T KOG4163|consen 161 AIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARV 240 (551)
T ss_pred eeccCccceecHHHHHHHHhhccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhCcccEEecCCCCcccc------------------------------ch----------------------------
Q 015762 158 YEEFLAVPVIKGKKSELENS------------------------------KF---------------------------- 179 (401)
Q Consensus 158 ~~~l~~ipv~~g~k~~~e~f------------------------------nF---------------------------- 179 (401)
|.+++++||+.|+|++.|+| ||
T Consensus 241 y~ellAiPVvkGrKse~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~QnSWg~sT 320 (551)
T KOG4163|consen 241 YEELLAIPVVKGRKSEKEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFVWQNSWGLST 320 (551)
T ss_pred HHhhhccccccCccchhhhccCCcceEEEeeeeccccccccccchhhhhHHHHHhhceeecCCCccchhheeeccccccc
Confidence 99999999999999999998 33
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCC----hhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHH
Q 015762 180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDAD----TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 255 (401)
Q Consensus 180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~----~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ 255 (401)
|.||+++|.||||+||+|||++||+||+|||++.++.. .+.+.++|..+.++|..+|||++.|+|+++++||||++
T Consensus 321 RtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnh 400 (551)
T KOG4163|consen 321 RTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNH 400 (551)
T ss_pred ceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCccccc
Confidence 99999999999999999999999999999999876542 46789999999999999999999999999999999999
Q ss_pred HHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHh
Q 015762 256 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEAL 335 (401)
Q Consensus 256 ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~ 335 (401)
||++|||+||+|||+|+++++|++.+||+++|.+|++++|+..|+++|++||.+||++|++.+++|++.|++|+||+++|
T Consensus 401 wElkGVPlRiEiGPrD~~~~qv~~VrRd~~~K~~v~~~~l~~~v~elLe~iq~~m~~kA~~~rds~~~~v~~~~eF~~aL 480 (551)
T KOG4163|consen 401 WELKGVPLRIEIGPRDLASNQVVAVRRDTGEKKDVSLGDLEKTVKELLEKIQTNLYEKAKEKRDSHIVKVNTWEEFVKAL 480 (551)
T ss_pred eeecCceeEEEeccchhhhCeEEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecCCChhHHHHHHHhhccC-------cCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 336 GQRKMILAPWCDEEEVEKDVKARTKGE-------MGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 336 ~~~~~~~~pwc~~~~~e~~ik~~~~~~-------~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
++|+++++||||..+||++||+.|++. +|||++|||||+||. .+.+|++||++|+.|+||||||
T Consensus 481 ~~k~iilaPwcg~~ecE~~IK~~s~r~e~ge~apsmGAKtlCiPf~qpe--~~~kcl~cg~~ak~~~lfGRSY 551 (551)
T KOG4163|consen 481 DQKKIILAPWCGEIECEKDIKKRTARDEDGEEAPSMGAKTLCIPFEQPE--LGEKCLCCGKPAKKYTLFGRSY 551 (551)
T ss_pred ccCCEEEccccCcHHHHHHHHhhhccccCCCCcccCCceeeeecCCCCC--CccceeccCCccceEEEecccC
Confidence 999999999999999999999999753 699999999999995 4668999999999999999999
No 2
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-97 Score=766.36 Aligned_cols=391 Identities=49% Similarity=0.928 Sum_probs=367.8
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+|+++++||++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|++.|+.++++++
T Consensus 27 l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l 106 (477)
T PRK08661 27 LADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKL 106 (477)
T ss_pred CcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceE
Confidence 57888899999999999999999999999999999999999999999999988899999999999999999887788999
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
+||||+|++|+.+|++|+.||+|||+|+|||++|||||.+ ++||+|+|||+|+|+|++|++.++|+++ ++++|.++
T Consensus 107 ~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i 185 (477)
T PRK08661 107 ALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEF 185 (477)
T ss_pred EEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 8899999999999999999999999888 89999999
Q ss_pred HHHhCcccEEecCCCCcccc-----------------------------c----h-----------------------HH
Q 015762 158 YEEFLAVPVIKGKKSELENS-----------------------------K----F-----------------------VQ 181 (401)
Q Consensus 158 ~~~l~~ipv~~g~k~~~e~f-----------------------------n----F-----------------------Rl 181 (401)
|.+.+++|++.+.++.+++| + | |+
T Consensus 186 ~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~dgr~~q~gt~~~Lg~~~s~~f~i~y~d~~g~~~~v~~~s~G~~~R~ 265 (477)
T PRK08661 186 FEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPDGKALQAGTSHYLGQNFAKAFDIKFQDKDGKLEYVHQTSWGVSTRL 265 (477)
T ss_pred HHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCCCCEEEEEEecccccchhHhcCCEEECCCCCEeeeEEecccHHHHH
Confidence 94444699998888876665 1 1 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCC
Q 015762 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 261 (401)
Q Consensus 182 i~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~Gv 261 (401)
|++|+|+|+|++|++||+++||+||+|+|+..++.+.+++.++|.+|++.|+++|+||++|+|.+.++|+||++|+++|+
T Consensus 266 i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~~ae~~Gv 345 (477)
T PRK08661 266 IGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFNEWELKGV 345 (477)
T ss_pred HHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999954422236788999999999999999999999544699999999999999
Q ss_pred CEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHh-cCCCE
Q 015762 262 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEAL-GQRKM 340 (401)
Q Consensus 262 P~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~-~~~~~ 340 (401)
|++|+||++|+++|+|+|++|++|++..++++++++.+.+++++||++||+||++++++||+.++|||||+++| ++||+
T Consensus 346 P~~IiIG~~ele~~~V~ik~rdtgek~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (477)
T PRK08661 346 PLRIEIGPRDLENNTVVLVRRDTLEKETVPLDELVEKVPELLEEIQENLYEKAKEFLEENTVEVDTLEEFKEAIEEKGGF 425 (477)
T ss_pred CEEEEECcchhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEcCCHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 77899
Q ss_pred EEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 341 ILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 341 ~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
|++||||+.+||++||++| |||+|||||+++ . .+|++||+||+.|++|||||
T Consensus 426 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~---~-~~c~~~~~~~~~~~~~~~~y 477 (477)
T PRK08661 426 VKAPWCGDEECEEKIKEET-----GATIRCIPLEQE---K-GKCIVCGKPAKKRVLFAKAY 477 (477)
T ss_pred EEEEecCCHHHHHHHHHHh-----CCEEEeEEcCCC---C-CcccccCCccceEEEEEEEC
Confidence 9999999999999999999 999999999886 2 36999999999999999999
No 3
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=1.4e-96 Score=757.94 Aligned_cols=392 Identities=43% Similarity=0.841 Sum_probs=366.6
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+|+++++|+++|+|.|+.+|+.|++++++.++++||++|+||+|++.++|.++++|+++|.+|||+|++.|++++++++
T Consensus 21 li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l 100 (472)
T TIGR00408 21 IIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPL 100 (472)
T ss_pred CccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcE
Confidence 57889999999999999999999999999999999999999999999999988788999999999999999988888999
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
+||||+|++++.+|++|+.||++||+|+|||++|||||.++++||+|+|||+|+|+|++|++.++|.++ ++++|.++
T Consensus 101 ~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i 180 (472)
T TIGR00408 101 ALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEF 180 (472)
T ss_pred EEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888999999999999999999999999988 99999999
Q ss_pred HHHhCcccEEecCCCCcccc-----------------------------ch---------------------------HH
Q 015762 158 YEEFLAVPVIKGKKSELENS-----------------------------KF---------------------------VQ 181 (401)
Q Consensus 158 ~~~l~~ipv~~g~k~~~e~f-----------------------------nF---------------------------Rl 181 (401)
|++.+++|++.+.++++|+| +| |+
T Consensus 181 ~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~dgr~~q~~t~~~Lg~~~sk~f~i~y~~~~g~~~~~h~~s~Gi~eRl 260 (472)
T TIGR00408 181 IENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPDGRTLQIATSHNLGQNFAKTFEIKFETPTGDKEYAYQTSYGISTRV 260 (472)
T ss_pred HHhccCCeEEEEecCchhhcCCccceEEEeEEEcCCCEEEEeeeecccccccHhcCCEEECCCCCEEeeEEccccHHHHH
Confidence 98444699988877766655 11 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCC
Q 015762 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 261 (401)
Q Consensus 182 i~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~Gv 261 (401)
|++|+|+|+|+.|++||+++||+||+|+|+..++.+++++.++|.+|++.|+++|++|++|+++. ++|+||++|+++|+
T Consensus 261 i~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r~~-s~gkk~k~Ae~~Gv 339 (472)
T TIGR00408 261 IGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDRDN-RPGRKFYQWEIKGI 339 (472)
T ss_pred HHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHCCC
Confidence 99999999999999999999999999999821111125688999999999999999999999985 99999999999999
Q ss_pred CEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcCC-CE
Q 015762 262 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQR-KM 340 (401)
Q Consensus 262 P~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~-~~ 340 (401)
|++|+||++|+++|+|+|++|++++|..++++++++.+.++++++|++||+||++++++||+.++|||||+++++++ |+
T Consensus 340 P~~IiIG~~Ele~~~V~ik~rdt~eq~~v~l~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (472)
T TIGR00408 340 PLRIEVGPNDIEKNIAVISRRDTGEKYQVSLDQLEERVVELLNNIQENLRNRAWERFEQKIVIVETLEEIKQALNEKRGV 419 (472)
T ss_pred CEEEEECcchhhCCeEEEEECCCCceEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEcCCHHHHHHHHHhCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864 69
Q ss_pred EEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 341 ILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 341 ~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
|++||||+.+||++||++| |||+||||++++. +.+|++||+||+.|++|||||
T Consensus 420 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~c~~~~~~~~~~~~~~~~y 472 (472)
T TIGR00408 420 VLVPWCGEEECEEDLKEKV-----QVTILCIPEDGDV---LQLCIFCGRKAPDYVLIARTY 472 (472)
T ss_pred EEEEecCCHHHHHHHHHHh-----CCeEeEEECCCCC---CCccCccCCcccEEEEEEEeC
Confidence 9999999999999999999 9999999998872 357999999999999999999
No 4
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-76 Score=597.02 Aligned_cols=391 Identities=31% Similarity=0.507 Sum_probs=345.4
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+++ +++|++.|+|.|+++|++|++++|+.+++.|++|+.+|+|+|.+|| +|||||++|++|||||+|+|+ +++
T Consensus 31 ~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLw-kEs~r~~~f~~El~~v~drg~----~~l 104 (500)
T COG0442 31 MIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELW-KESGRWEGFGPELFRVKDRGD----RPL 104 (500)
T ss_pred ceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHH-HHhChhhhcchhhEEEEccCC----cee
Confidence 4555 9999999999999999999999999999999999999999998888 799999999999999999995 999
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
+||||||+.|+.++++|++||+|||+++|||+++||||.||++||||.|||+|+|+|+||+|.++|+++ ++++|.+|
T Consensus 105 ~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~i 184 (500)
T COG0442 105 ALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRI 184 (500)
T ss_pred eeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHHhCcccEEecCCCCcccc-----------------------------ch-----------------------------
Q 015762 158 YEEFLAVPVIKGKKSELENS-----------------------------KF----------------------------- 179 (401)
Q Consensus 158 ~~~l~~ipv~~g~k~~~e~f-----------------------------nF----------------------------- 179 (401)
|.. +|+..+.++++++| ||
T Consensus 185 f~~---i~l~~~~~~ad~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~ 261 (500)
T COG0442 185 FLR---LPLIFGPVPADEGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGIST 261 (500)
T ss_pred HHh---CCceEEeecccCCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccccceEecccceEEEe
Confidence 954 56554444444433 22
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCC-ChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHH
Q 015762 180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA-DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 258 (401)
Q Consensus 180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~-~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~ 258 (401)
|.++++++.||||.|+++||.+||.||+++|+..++. ......+++..++..|...+++++.|+++..++|+|++.|+.
T Consensus 262 r~~~~~i~i~GDn~G~v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ 341 (500)
T COG0442 262 RIIGAAILIHGDNEGLVLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEG 341 (500)
T ss_pred eeeeEEEEEecCCCCccCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeec
Confidence 8889999999999999999999999999999875542 123477889999999999999999997654699999999999
Q ss_pred hCCCEEEEeCccccCCCeEEEEECCCCc--eeeechhhHHHH-HHHHHHHHH--HHHHHH-HHHHHHcCeeeecCHHHHH
Q 015762 259 KGVPLRIEIGPKDLANDQVRAVRRDNGA--KIDLPRGSLVER-VKELLEEVQ--ESLFVA-AKQRRDACIQIVKTWDEFV 332 (401)
Q Consensus 259 ~GvP~~iiiG~kE~~~~~V~v~~r~tg~--k~~v~~~el~~~-i~~~l~~~~--~~l~~~-a~~~~~~~~~~~~~~~e~~ 332 (401)
+|||.++.+|+++.++.++++.+|++.+ +...+...+++. +..+++++| +.|+.+ |.+.++.+|+.+++. |++
T Consensus 342 ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~-~~~ 420 (500)
T COG0442 342 IEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTK-DFK 420 (500)
T ss_pred cccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCch-hHH
Confidence 9999999999999999999999999998 889999999999 999999999 999999 999999999999988 555
Q ss_pred HHh-cCCCEEEeecCCChhHHHHHHHhhc-cCcCCCeeecccCCCCC---CCCCC---cccccCCCcce--EEEEeecC
Q 015762 333 EAL-GQRKMILAPWCDEEEVEKDVKARTK-GEMGAAKTLCSPLEQPE---VPEGT---LCFASGKPAKK--WTYWGRSY 401 (401)
Q Consensus 333 ~~~-~~~~~~~~pwc~~~~~e~~ik~~~~-~~~~~~~~~c~p~~~~~---~~~~~---~C~~~g~~a~~--~~~~~rsY 401 (401)
..+ ++++++.+||||+.+|+.+++++-. ....+|+++|||++... ..+|. +|..||..+.. +++|+|+|
T Consensus 421 ~~~~~~~~~~~l~~~G~~e~~~ddr~er~g~k~~~a~liGiP~~~~~g~~~~~g~~e~k~r~~ge~~~~~~~~l~~~~~ 499 (500)
T COG0442 421 QAEAAEKLYVELPWCGTVEVLLDDRDERPGVKFADADLIGIPLRIVVGKRLAEGEVEVKCRKCGEKEAVTIEALFARLY 499 (500)
T ss_pred HHHHhhhHHHHHHhCCchhhhhhhhccccCccccCCeEecccceeeecccccCCceeEEecCCCchhhccHHHHHHHhh
Confidence 544 4456999999999999999993222 11239999999997652 22343 79999977776 89999987
No 5
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-58 Score=470.21 Aligned_cols=285 Identities=22% Similarity=0.360 Sum_probs=257.4
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
.++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++| +.+|||++|.+|||++++.++ ++++||||
T Consensus 35 ~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~~----~~~~L~Pt 109 (439)
T PRK12325 35 QAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGKEMLRIKDRHD----REMLYGPT 109 (439)
T ss_pred cCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccchhheEEecCCC----CEEEEcCC
Confidence 5899999999999999999999999999999999999999999999 578999999999999998864 89999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHhC
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFL 162 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l~ 162 (401)
+|+.++.++++++.||++||+|+|||++|||||.+|+.||+|+|||+|+|+|+++++.+++.++ ++++|.++|+.++
T Consensus 110 ~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lg 189 (439)
T PRK12325 110 NEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLG 189 (439)
T ss_pred CcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988899999999999999999998888776 9999999999875
Q ss_pred cccE---E------ecCCC----------------------------------------------C--------------
Q 015762 163 AVPV---I------KGKKS----------------------------------------------E-------------- 173 (401)
Q Consensus 163 ~ipv---~------~g~k~----------------------------------------------~-------------- 173 (401)
+|+ . +|..+ .
T Consensus 190 -l~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 268 (439)
T PRK12325 190 -LKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDVADLQPIVDEWTSLYAATEEMHDEAAFA 268 (439)
T ss_pred -CceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCHHHHHHHHhhhcccccchhhhhccCCCC
Confidence 552 1 11100 0
Q ss_pred ---c------------ccc--------ch------------------------HHHHHHHHHcCCCCCCCCCCCCCCceE
Q 015762 174 ---L------------ENS--------KF------------------------VQIGVMVMVHGDDKGLMLPPKVASVQV 206 (401)
Q Consensus 174 ---~------------e~f--------nF------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV 206 (401)
. ..| .| |+|++|+++|+|++|++||+++||+||
T Consensus 269 ~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV 348 (439)
T PRK12325 269 AVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKV 348 (439)
T ss_pred cCCCcceeecceEEEEeeecCcccccHhcCCEEECCCCCEEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEE
Confidence 0 001 01 999999999999999999999999999
Q ss_pred EEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCc
Q 015762 207 IVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGA 286 (401)
Q Consensus 207 ~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~ 286 (401)
+|+|+..++ ++..++|.+|++.|+++|++|++|+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|++++
T Consensus 349 ~Iipi~~~~---~~~~~~a~~i~~~L~~~Gi~v~~D~~~-~~lg~ki~~a~~~giP~~iiVG~~e~~~~~V~vr~r~~~~ 424 (439)
T PRK12325 349 GIINLKQGD---EACDAACEKLYAALSAAGIDVLYDDTD-ERPGAKFATMDLIGLPWQIIVGPKGLAEGKVELKDRKTGE 424 (439)
T ss_pred EEEecCCCC---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHhHHHHHHHHcCCCEEEEECCcccccCeEEEEEcCCCc
Confidence 999995332 668899999999999999999999997 5999999999999999999999999999999999999999
Q ss_pred eeeechhhHHHHHH
Q 015762 287 KIDLPRGSLVERVK 300 (401)
Q Consensus 287 k~~v~~~el~~~i~ 300 (401)
+..++++++++.|.
T Consensus 425 ~~~v~~~el~~~i~ 438 (439)
T PRK12325 425 REELSVEAAINRLT 438 (439)
T ss_pred eEEEEHHHHHHHHh
Confidence 99999999887663
No 6
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-57 Score=474.05 Aligned_cols=286 Identities=25% Similarity=0.415 Sum_probs=258.9
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
+.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++| +++|||++|.+|||+|+|+++ ++++|||
T Consensus 34 ~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~~----~~l~LrP 108 (565)
T PRK09194 34 KLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELW-QESGRWEEYGPELLRLKDRHG----RDFVLGP 108 (565)
T ss_pred ccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHH-hhcCCccccchhceEEecCCC----CEEEECC
Confidence 45799999999999999999999999999999999999999999999 578999999999999999874 8999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHh
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEF 161 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l 161 (401)
|+|+.++.++++++.||++||+|+|||++|||||.+|+.||+|+|||+|+|+|++|.+.++++++ ++++|.++|+.+
T Consensus 109 t~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 109 THEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred CChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999985 889999999988
Q ss_pred CcccEEec----------------------C----------------------------------------CC-------
Q 015762 162 LAVPVIKG----------------------K----------------------------------------KS------- 172 (401)
Q Consensus 162 ~~ipv~~g----------------------~----------------------------------------k~------- 172 (401)
+ +|+... . .+
T Consensus 189 g-l~~~~~~~~~g~~gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~p~~~t~~e~a~~ 267 (565)
T PRK09194 189 G-LDFRAVEADSGAIGGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDTPNAKTIEELAEF 267 (565)
T ss_pred C-CccEEEEcccccCCCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecCCCCCcHHHHHHH
Confidence 6 564110 0 00
Q ss_pred ---------------------------------------------------C----------------------------
Q 015762 173 ---------------------------------------------------E---------------------------- 173 (401)
Q Consensus 173 ---------------------------------------------------~---------------------------- 173 (401)
+
T Consensus 268 lg~~~~~~~KtLi~~~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~s 347 (565)
T PRK09194 268 LNVPAEKTVKTLLVKADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFLGPVGLPKDVPIIADRS 347 (565)
T ss_pred hCCCHHHeeEEEEEEeCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCccCcccCCCCceEEEecc
Confidence 0
Q ss_pred ---cc--------------------cc----------------------------------------ch-----------
Q 015762 174 ---LE--------------------NS----------------------------------------KF----------- 179 (401)
Q Consensus 174 ---~e--------------------~f----------------------------------------nF----------- 179 (401)
.+ .| +|
T Consensus 348 l~~~~~~~~gan~~g~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~~~ 427 (565)
T PRK09194 348 VADMSNFVVGANEDDYHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEAMNATVLDE 427 (565)
T ss_pred ccccccccccCCCCCceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchhhccCCEEECC
Confidence 00 00 00
Q ss_pred -----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEc
Q 015762 180 -----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSD 242 (401)
Q Consensus 180 -----------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD 242 (401)
|+|++|+++|+|++|++||+++||+||+|+|++.++ ++..++|.+|++.|+++|++|.+|
T Consensus 428 ~g~~~~~~m~~~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~---~~~~~~a~~i~~~L~~~gi~v~~D 504 (565)
T PRK09194 428 NGKAQPLIMGCYGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKD---EEVKELAEKLYAELQAAGIEVLLD 504 (565)
T ss_pred CCCEEeEEEeeEechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCc---HHHHHHHHHHHHHHhccCCeEEEE
Confidence 999999999999999999999999999999997432 568899999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015762 243 FRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 300 (401)
Q Consensus 243 ~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~ 300 (401)
+++ .++|+||++|+++|+|++|+||++|+++|+|+|++|++|+|..|+++++.+.|.
T Consensus 505 dr~-~~~g~k~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 505 DRK-ERPGVKFADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred CCC-CCHHHHHHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 997 599999999999999999999999999999999999999999999999987774
No 7
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=100.00 E-value=1.8e-56 Score=412.68 Aligned_cols=202 Identities=50% Similarity=0.952 Sum_probs=188.8
Q ss_pred CCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccC
Q 015762 194 GLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA 273 (401)
Q Consensus 194 Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~ 273 (401)
||+|||++||+||+|+|++.++.+.+++.+++.+|++.|+++||||++|+++..++|+||++|+++|+|++|+||++|++
T Consensus 1 GLvlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ae~~GvP~~I~IG~~Ele 80 (202)
T cd00862 1 GLVLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFNDWELKGVPLRIEIGPRDLE 80 (202)
T ss_pred CCcCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHHHHhCCCCEEEEECcchhh
Confidence 79999999999999999975432235588999999999999999999999875599999999999999999999999999
Q ss_pred CCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcCCCEEEeecCCChhHHH
Q 015762 274 NDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEK 353 (401)
Q Consensus 274 ~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~pwc~~~~~e~ 353 (401)
+|+|+|++|+++++..++++++.+.+.++|++||++||+||++++++ |+.++|||||+++|++||||++||||+.+||+
T Consensus 81 ~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i~~~l~~~A~~~~~~-~~~~~~~~e~~~~~~~~~~v~~~wcg~~~~e~ 159 (202)
T cd00862 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYERALEFRDA-TRIVDTWEEFKEALNEKGIVLAPWCGEEECEE 159 (202)
T ss_pred CCEEEEEEecCCcceEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-eEeeCCHHHHHHHHhcCCEEEEEecCCHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999989999999999999999
Q ss_pred HHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 354 DVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 354 ~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
+||++| +||+||||++++.+..+.+|++||+||+.|++|||||
T Consensus 160 ~ik~~~-----~a~~~~ip~~~~~~~~~~~C~~~g~~a~~~~~~arsY 202 (202)
T cd00862 160 EIKEET-----AATILCIPFDEAKLEEGGKCVVCGRPAKAYARFAKSY 202 (202)
T ss_pred HHHHhh-----CCeEeeeecCCcCCCCCCccCCcCCchheEEEEEEeC
Confidence 999999 9999999998762223457999999999999999999
No 8
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=7.1e-56 Score=463.88 Aligned_cols=287 Identities=22% Similarity=0.380 Sum_probs=258.9
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
+.++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++| +++||+++|.+|||+|+|+++ ++++|||
T Consensus 34 ~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~-~~sg~~~~~~~emf~~~dr~~----~~l~LrP 108 (568)
T TIGR00409 34 RLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELW-QESGRWDTYGPELLRLKDRKG----REFVLGP 108 (568)
T ss_pred ccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHH-hhcCCCCccchhcEEEecCCC----CEEEEcC
Confidence 45799999999999999999999999999999999999999999999 579999999999999999874 8999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHh
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEF 161 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l 161 (401)
|+|+.++.++++++.||++||+|+|||++|||+|.+|+.||+|+|||+|.|+|++|.+.++++++ ++++|.++|+.+
T Consensus 109 T~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 109 THEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred CCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999887 678899999998
Q ss_pred CcccEEe---------cC-------------------------------------CC-----------------------
Q 015762 162 LAVPVIK---------GK-------------------------------------KS----------------------- 172 (401)
Q Consensus 162 ~~ipv~~---------g~-------------------------------------k~----------------------- 172 (401)
+ +|+.. |. ..
T Consensus 189 g-L~~~~v~~~~g~~gg~~s~ef~~~~~~ge~~i~~c~~~~y~an~e~a~~~~~~~~~~~~~~~~~~~tp~~~ti~~~~~ 267 (568)
T TIGR00409 189 G-LDFRPVQADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIELAEALAPGERNAPTAELDKVDTPNTKTIAELVE 267 (568)
T ss_pred C-CcceEEEeccccCCCccceEEeEecCCCceEEEEecCcccchhhhhhcccCccccccccccceeecCCCCCcHHHHHH
Confidence 5 55310 00 00
Q ss_pred ------------------C--------------------------c-c--------------------------------
Q 015762 173 ------------------E--------------------------L-E-------------------------------- 175 (401)
Q Consensus 173 ------------------~--------------------------~-e-------------------------------- 175 (401)
. . +
T Consensus 268 ~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~~~~~~a~~~~~~~~~g~~~g~~gpv~~~~~~~i 347 (568)
T TIGR00409 268 CFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVAQVLELATEEEIFQKIASGPGSLGPVNINGGIPV 347 (568)
T ss_pred HhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccCcccccCCHHHHHHhhCCCCCccCccccccCceE
Confidence 0 0 0
Q ss_pred ----------cc--------------c----------------------------------------h------------
Q 015762 176 ----------NS--------------K----------------------------------------F------------ 179 (401)
Q Consensus 176 ----------~f--------------n----------------------------------------F------------ 179 (401)
.| | |
T Consensus 348 ~~D~~~~~~~~~~~gan~~~~h~~~~~~~rd~~~~~~~d~~~~~eGd~cp~c~~~l~~~rgIEvGhiF~LG~kYS~~~~~ 427 (568)
T TIGR00409 348 LIDQTVALMSDFAAGANADDKHYFNVNWDRDVAIPEVADIRKVKEGDPSPDGQGTLKIARGIEVGHIFQLGTKYSEALKA 427 (568)
T ss_pred EechhhhcccccccccCCCCceeecccccccCCccccchhhhhhccCCCCCCCCcccccceEEEEEeccchhhhHHhcCC
Confidence 00 0 0
Q ss_pred ----------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCC
Q 015762 180 ----------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGI 237 (401)
Q Consensus 180 ----------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Gi 237 (401)
|+|++++|+|+|++|++||+++||+||+|+|+..++ ++..++|.+|++.|+++|+
T Consensus 428 ~~~d~~g~~~~~~mgcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~---~~~~~~a~~l~~~L~~~gi 504 (568)
T TIGR00409 428 TFLDENGKNQFMTMGCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKD---EEQQQLAEELYSELLAQGV 504 (568)
T ss_pred EEECCCCCEEEEEEeCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCCh---HHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999997542 4688999999999999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHH
Q 015762 238 RANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 301 (401)
Q Consensus 238 rv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~ 301 (401)
+|.+|+|+ .++|+||++|++.|+|++|+||++++++|+|+|++|+++++..|+++++++.|.+
T Consensus 505 ~v~~DDr~-~~~G~K~~dadliGiP~~i~vG~~~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 505 DVLLDDRN-ERAGVKFADSELIGIPLRVVVGKKNLDNGEIEVKKRRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred EEEEECCC-CCHHHHHHhhhhcCCCEEEEECCCcccCCeEEEEEcCCCceEEEEHHHHHHHHhh
Confidence 99999998 4999999999999999999999999999999999999999999999999887753
No 9
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.6e-53 Score=448.37 Aligned_cols=290 Identities=21% Similarity=0.259 Sum_probs=259.2
Q ss_pred CCcccC--CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCC
Q 015762 1 MIEYYD--ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78 (401)
Q Consensus 1 l~~~~~--~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~ 78 (401)
|+++.+ .+|++.|+|.|+.|++.|++++++.+.++||++|.||.+...++| +.+||+++|.++||++++. ++
T Consensus 208 L~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~-~~sgh~~~f~e~my~v~~~-----~e 281 (613)
T PRK03991 208 LADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHP-AIREHADKFGERQYRVKSD-----KK 281 (613)
T ss_pred CcccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHH-hhcccccccchhceEecCC-----Cc
Confidence 456644 789999999999999999999999999999999999999999999 5899999999999999654 37
Q ss_pred cEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeec-ceecCCCCC-CCcccchhheeccceeecCChhhHHHH---HHHH
Q 015762 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCN-VVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDE---ILEL 153 (401)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~-vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e---il~~ 153 (401)
+++||||+|++++.+|++|+.||++||++++|+|+ +||+|.++. .||+|+|||+|.|+|+|+.+.++|.+| ++++
T Consensus 282 ~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~ 361 (613)
T PRK03991 282 DLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEM 361 (613)
T ss_pred eEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 999998875 699999999999999977767899888 8889
Q ss_pred HHHHHHHhCcccEEe---------------------------------cCCCC---------------------------
Q 015762 154 YRRIYEEFLAVPVIK---------------------------------GKKSE--------------------------- 173 (401)
Q Consensus 154 ~~~i~~~l~~ipv~~---------------------------------g~k~~--------------------------- 173 (401)
+.++|+.|| +|+.. |.+.-
T Consensus 362 ~~~i~~~lG-l~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~ 440 (613)
T PRK03991 362 ILETGEDLG-RDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVE 440 (613)
T ss_pred HHHHHHHcC-CCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcc
Confidence 889998875 66311 11000
Q ss_pred -cccc--ch----------------------HHHHHHHHHcCCC----CCCCCCCCCCCceEEEEEcCCCCCChhhHHHH
Q 015762 174 -LENS--KF----------------------VQIGVMVMVHGDD----KGLMLPPKVASVQVIVIPVPYKDADTQGIFDA 224 (401)
Q Consensus 174 -~e~f--nF----------------------Rli~~li~~~~dd----~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~ 224 (401)
+++| .| |+|++|+|+|+|+ +|++||+|+||+||+|+|++ ++..++
T Consensus 441 ~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~------e~~~~~ 514 (613)
T PRK03991 441 NAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVS------ERHLDY 514 (613)
T ss_pred cchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeC------HHHHHH
Confidence 0000 00 9999999999998 89999999999999999997 678899
Q ss_pred HHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 225 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 225 a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
|.+|++.|+++|++|.+|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.++++
T Consensus 515 A~eIa~~Lr~~GirV~lDdr~-~slgkKir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v~l~eli~~l~~~~~ 593 (613)
T PRK03991 515 AEEVADKLEAAGIRVDVDDRD-ESLGKKIRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEMTLEELIERIKEETK 593 (613)
T ss_pred HHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 999999999999999999997 5999999999999999999999999999999999999999999999999998887765
No 10
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.5e-53 Score=437.94 Aligned_cols=283 Identities=18% Similarity=0.289 Sum_probs=247.4
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|...++|. .|||+++|.++||++ +.+ +++++|||
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k-~SGh~~~y~~~mf~~-~~~----~e~~~LrP 228 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWK-ISGHYTLYRDKLIVF-NME----GDEYGVKP 228 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHh-hccccccchhhccee-ecc----CceEEecc
Confidence 468999999999999999999999999999999999999999999995 699999999999999 444 38999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCC-CCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHH
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEE 160 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~ 160 (401)
|+|++++.+|+++++|||+||+|++|||+|||||.++. .||+|+|||+|+|+|+ +|+.+++.+| +++++.++|+.
T Consensus 229 m~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~~E~~~~l~~i~~vy~~ 307 (545)
T PRK14799 229 MNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLREEIKMLISKTVEVWHK 307 (545)
T ss_pred CCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997663 4999999999999999 7778877666 77888888988
Q ss_pred hCc----ccEEec--------CCCCcccc--------------------------------------------------c
Q 015762 161 FLA----VPVIKG--------KKSELENS--------------------------------------------------K 178 (401)
Q Consensus 161 l~~----ipv~~g--------~k~~~e~f--------------------------------------------------n 178 (401)
+|- +++..+ ....|+++ +
T Consensus 308 fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~g~gafygpkiD~~v~dalgr~~q~~Tiqldf~ 387 (545)
T PRK14799 308 FGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKEKEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFN 387 (545)
T ss_pred hCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEecceeccccCccceEehhhcCchhhhhhhhhhcC
Confidence 861 222221 11112111 0
Q ss_pred ----h--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHH
Q 015762 179 ----F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTAT 228 (401)
Q Consensus 179 ----F--------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l 228 (401)
| |++++|++++. | .||+|++|.||+|+|++ ++..++|.+|
T Consensus 388 lp~rf~Ley~~~~~~~~~pv~ihr~~~GgiERli~iL~e~~~---G-~~P~wlaP~qV~Iipi~------e~~~~~A~~I 457 (545)
T PRK14799 388 LPERFKLEYIDKDGIKKRPVMVHRAIYGSIDRFVAILLEHFK---G-KLPTWLSSVQVRVLPIT------DEVNEYAEKV 457 (545)
T ss_pred cccccceEEEcCCCCCcccEEEEccCCCCHHHHHHHHHHHcC---C-CCCCCCCCceEEEEEcC------HHHHHHHHHH
Confidence 1 99998877543 3 69999999999999997 5688999999
Q ss_pred HHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 229 VEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 229 ~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.+.++.
T Consensus 458 a~~LR~~GirVelD~~~-~~lgkkir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~~ 533 (545)
T PRK14799 458 LNDMRKRRIRAEIDYAG-ETLSKRIKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEIAQ 533 (545)
T ss_pred HHHHHhCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHHhh
Confidence 99999999999999987 49999999999999999999999999999999999999999999999998887776664
No 11
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-51 Score=439.33 Aligned_cols=281 Identities=23% Similarity=0.369 Sum_probs=249.9
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.|.++|| +.+.++ +.++|||
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sG~~~~~~~emy-~~d~~~----~~~~LrP 334 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWER-SGHWDHYKDNMY-FSEVDN----KSFALKP 334 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCChhhhhhhcC-eecCCC----cEEEEcc
Confidence 4589999999999999999999999999999999999999999999975 799999999999 667664 8999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHH
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEE 160 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~ 160 (401)
|+|++++.+|++++.||++||+|+||||+|||||.++ ++||+|+|||+|+|+|+ +++.+++++| +++++.++|+.
T Consensus 335 ~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~~~~~~~~~i~~~ 413 (639)
T PRK12444 335 MNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHL-FVTPDQIEDEIKSVMAQIDYVYKT 413 (639)
T ss_pred CCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEE-ECCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999655 45999999999999997 5787888888 89999999998
Q ss_pred hCcccEEecC--CC--------Ccccc-----------------------------------------------------
Q 015762 161 FLAVPVIKGK--KS--------ELENS----------------------------------------------------- 177 (401)
Q Consensus 161 l~~ipv~~g~--k~--------~~e~f----------------------------------------------------- 177 (401)
++ +|+.... ++ .|+++
T Consensus 414 lg-l~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~~~~~~t~~~d~~~~ 492 (639)
T PRK12444 414 FG-FEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNRSHQCGTIQLDFQMP 492 (639)
T ss_pred cC-CcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCChhcccceeeecccc
Confidence 86 7764321 11 01000
Q ss_pred -ch--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChh-hHHHHHHHHH
Q 015762 178 -KF--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQ-GIFDACTATV 229 (401)
Q Consensus 178 -nF--------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~-~~~~~a~~l~ 229 (401)
.| |+|++|++++ |+.+|+|++|.||+|+|++ + +..++|.+|+
T Consensus 493 ~~f~l~~~~~~g~~~~P~i~~~~~~g~ieRli~~L~e~~----~~~~p~~~ap~qV~Ii~~~------~~~~~~~a~~la 562 (639)
T PRK12444 493 EKFDLNYIDEKNEKRRPVVIHRAVLGSLDRFLAILIEHF----GGAFPAWLAPVQVKVIPVS------NAVHVQYADEVA 562 (639)
T ss_pred cccceEEECCCCCccccEEEEECCCCCHHHHHHHHHHhc----CCCCCCccCCceEEEEEcc------cHHHHHHHHHHH
Confidence 01 9999999986 4789999999999999997 4 5779999999
Q ss_pred HHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 230 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 230 ~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
+.||++|++|++|.++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.+.++
T Consensus 563 ~~LR~~Gi~veid~~~-~sl~kq~k~A~k~g~~~~iiiG~~E~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~ 636 (639)
T PRK12444 563 DKLAQAGIRVERDERD-EKLGYKIREAQMQKIPYVLVIGDKEMENGAVNVRKYGEEKSEVIELDMFVESIKEEIK 636 (639)
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhcCeEEEEECCCCceeeeeHHHHHHHHHHHhh
Confidence 9999999999999987 5999999999999999999999999999999999999999999999999888876654
No 12
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=6.6e-51 Score=429.59 Aligned_cols=283 Identities=19% Similarity=0.291 Sum_probs=250.3
Q ss_pred CCcccC--CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCC
Q 015762 1 MIEYYD--ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEV 78 (401)
Q Consensus 1 l~~~~~--~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~ 78 (401)
|+++.+ ++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.|.+|||+|+|+++ +
T Consensus 181 l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sg~~~~~~~emy~~~d~~~----~ 255 (563)
T TIGR00418 181 LFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEI-SGHWDNYKERMFPFTELDN----R 255 (563)
T ss_pred CcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHh-cCCcccchhhcceeccCCC----c
Confidence 345554 89999999999999999999999999999999999999999999964 7999999999999999875 8
Q ss_pred cEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHHHH---HHHHH
Q 015762 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDE---ILELY 154 (401)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~ 154 (401)
.++||||+|++++++|+++..|+++||+|+||+|+|||||.++ .+||+|+|||+|.|+|+++. .+++++| +++++
T Consensus 256 ~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~~ 334 (563)
T TIGR00418 256 EFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRLI 334 (563)
T ss_pred eEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887 46999999999999999776 7888888 99999
Q ss_pred HHHHHHhCcccE---EecCC-C--------Ccc-----------------------------------------------
Q 015762 155 RRIYEEFLAVPV---IKGKK-S--------ELE----------------------------------------------- 175 (401)
Q Consensus 155 ~~i~~~l~~ipv---~~g~k-~--------~~e----------------------------------------------- 175 (401)
.++|+.+| +|. ..+.. + .|.
T Consensus 335 ~~~~~~lg-l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~~f~~~~~lg~~~~~~t 413 (563)
T TIGR00418 335 QKVYSDFG-FSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKIDFAFKDALGREWQCAT 413 (563)
T ss_pred HHHHHHcC-CCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceEEEEeecCCCCceeece
Confidence 99999886 662 11111 0 000
Q ss_pred ---------cc-------------------ch-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHH
Q 015762 176 ---------NS-------------------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIF 222 (401)
Q Consensus 176 ---------~f-------------------nF-----Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~ 222 (401)
+| -| |++++|++.++ ..||++++|.||+|+|++ ++..
T Consensus 414 ~q~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~----~~~p~~~~p~~v~vi~~~------~~~~ 483 (563)
T TIGR00418 414 VQLDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYA----GNFPLWLAPVQVVVIPVN------ERHL 483 (563)
T ss_pred eeeccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhcc----CCCCCcCCCceEEEEEcc------chHH
Confidence 01 01 99999988764 568988999999999998 4577
Q ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHH
Q 015762 223 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKE 301 (401)
Q Consensus 223 ~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~ 301 (401)
++|.+|++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++|++..++++++++.+++
T Consensus 484 ~~a~~ia~~LR~~Gi~v~~d~~~-~sl~~q~k~A~~~g~~~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~ 561 (563)
T TIGR00418 484 DYAKKVAQKLKKAGIRVDVDDRN-ERLGKKIREAQKQKIPYMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRK 561 (563)
T ss_pred HHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHh
Confidence 89999999999999999999987 5999999999999999999999999999999999999999999999998777653
No 13
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=7.1e-51 Score=431.01 Aligned_cols=281 Identities=20% Similarity=0.309 Sum_probs=250.1
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
..+|++.|+|.|.++++.|++++++...+.||++|.||.|.+.++| +.||||+.|.++||.+.+.. ++.++||||
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~-~~sGh~~~~~~~mf~~~~~~----~~~y~l~p~ 309 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLW-KTSGHLDFYKENMYDQMDIE----DELYQLRPM 309 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHH-hhcCCcccchhhcccccCCC----CceEEECCC
Confidence 4689999999999999999999999999999999999999999999 58999999999999997754 378999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHh
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEF 161 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l 161 (401)
+|+.++.+|++++.||++||+|++|||+|||||.++ .+||+|+|||+|+|+|+ |++++++++| ++++|.++|+.|
T Consensus 310 ~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~l 388 (614)
T PLN02837 310 NCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQF 388 (614)
T ss_pred CcHHHHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999875 56999999999999998 8999999888 999999999988
Q ss_pred CcccE-Ee--cCCC--------Ccccc--------------------------------------------------c--
Q 015762 162 LAVPV-IK--GKKS--------ELENS--------------------------------------------------K-- 178 (401)
Q Consensus 162 ~~ipv-~~--g~k~--------~~e~f--------------------------------------------------n-- 178 (401)
| +|+ .. +.++ .|+++ |
T Consensus 389 g-~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~ 467 (614)
T PLN02837 389 G-FSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLP 467 (614)
T ss_pred C-CCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecch
Confidence 6 774 11 1111 11110 1
Q ss_pred --h--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHH
Q 015762 179 --F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 230 (401)
Q Consensus 179 --F--------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~ 230 (401)
| |+|++|+++|++ .||+|+||.||+|+|+. ++..++|.+|++
T Consensus 468 ~~f~l~y~~~d~~~~~pv~ih~~~~G~~eRlia~Lie~~~g----~~P~~laP~qV~IIpi~------~~~~~~A~~Ia~ 537 (614)
T PLN02837 468 ERFDITYVDSNSEKKRPIMIHRAILGSLERFFGVLIEHYAG----DFPLWLAPVQARVLPVT------DNELEYCKEVVA 537 (614)
T ss_pred hhcCcEEECCCCCccCCEEEEcCCccCHHHHHHHHHHHcCC----CCCCCCCCccEEEEEeC------hHHHHHHHHHHH
Confidence 1 999999999874 39999999999999997 456799999999
Q ss_pred HHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 231 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 231 ~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
+||++|+||++| .+ .++|+|+++|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.+..+.
T Consensus 538 ~Lr~~GirVev~-~~-~slgkkir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~ 610 (614)
T PLN02837 538 KLKAKGIRAEVC-HG-ERLPKLIRNAETQKIPLMAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVEN 610 (614)
T ss_pred HHHHCCCEEEEe-CC-CCHHHHHHHHHHcCCCEEEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHhh
Confidence 999999999995 45 49999999999999999999999999999999999999999999999988887766553
No 14
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.7e-50 Score=425.87 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=250.2
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||+|+|.++ +.++|||
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~----~~~~LRP 267 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDE----EEYYLKP 267 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCC----ceEEEec
Confidence 3589999999999999999999999999999999999999999999975 8999999999999998874 8999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHH--HHHHHHHHHHHHHh
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEAD--DEILELYRRIYEEF 161 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~--~eil~~~~~i~~~l 161 (401)
|+|++++++++++..||++||+|++|+|+|||+|.++ .+|++|+|||+|.|+|+++.....++ +|+++++.++|+.+
T Consensus 268 ~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~l 347 (575)
T PRK12305 268 MNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDF 347 (575)
T ss_pred CCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999653 35999999999999999665444454 55999999999998
Q ss_pred Cccc---EEecCCC---------Cccc------------------------c----------------------------
Q 015762 162 LAVP---VIKGKKS---------ELEN------------------------S---------------------------- 177 (401)
Q Consensus 162 ~~ip---v~~g~k~---------~~e~------------------------f---------------------------- 177 (401)
| +| +..+.++ .|++ |
T Consensus 348 g-l~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~ 426 (575)
T PRK12305 348 G-FKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQLDFNL 426 (575)
T ss_pred C-CCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCcccccccEEEEeeccCCCceeccceeeeccc
Confidence 6 66 2222211 0100 0
Q ss_pred --ch--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHH
Q 015762 178 --KF--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATV 229 (401)
Q Consensus 178 --nF--------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~ 229 (401)
.| |++++|+++++ ..||+|++|.||+|+|++ ++..++|.+|+
T Consensus 427 ~~~fdl~y~~~~~~~~~p~~ih~~~~G~~eRl~~~l~e~~~----~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~ 496 (575)
T PRK12305 427 PERFDLEYTAEDGKRQRPVMIHRALFGSIERFIGILTEHYA----GAFPFWLAPVQVVIIPVA------DAHNEYAEEVA 496 (575)
T ss_pred HhhCCCEEECCCCCccCceEEEccccccHHHHHHHHHHHhC----CCCCCCCCCccEEEEEeC------hHHHHHHHHHH
Confidence 01 99999998864 489999999999999997 56889999999
Q ss_pred HHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 230 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 230 ~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
+.||++||+|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.++++++.
T Consensus 497 ~~Lr~~gi~v~~d~~~-~~l~kk~~~A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~ 571 (575)
T PRK12305 497 KKLRAAGIRVEVDTSN-ERLNKKIRNAQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAE 571 (575)
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhc
Confidence 9999999999999987 59999999999999999999999999999999999999999999999999888877664
No 15
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=2.4e-49 Score=424.33 Aligned_cols=282 Identities=19% Similarity=0.249 Sum_probs=251.1
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
...+|+++|+|.|+.+++.|++++++.+.++||++|.||.|++.++|. .|||+++|.++||+|.. + +++++|||
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~-~sGh~~~~~~~mf~~~~-~----~~~~~Lrp 381 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWE-TSGHAAHYKENMFVFEI-E----KQEFGLKP 381 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHh-hcCCccccchhccEEec-C----CeeEEEcC
Confidence 346899999999999999999999999999999999999999999996 69999999999999944 4 38999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHH
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEE 160 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~ 160 (401)
|+|++++.+|+++..||++||+|++|+|+|||+|.++ ..|++|+|||+|+|+|+ +++++++.+| +++++.++|+.
T Consensus 382 ~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~l~~~~~v~~~ 460 (686)
T PLN02908 382 MNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGVLDFLDYVYEV 460 (686)
T ss_pred CCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876 35999999999999999 7777777666 88999999998
Q ss_pred hCcccEEecCCCCcccc---------------------------------------------------------------
Q 015762 161 FLAVPVIKGKKSELENS--------------------------------------------------------------- 177 (401)
Q Consensus 161 l~~ipv~~g~k~~~e~f--------------------------------------------------------------- 177 (401)
+| +++....++.+++|
T Consensus 461 lG-~~~~~~ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp 539 (686)
T PLN02908 461 FG-FTYELKLSTRPEKYLGDLETWDKAEAALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLP 539 (686)
T ss_pred CC-CcEEEEEeCCccccCCCHHHHHHHHHHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCH
Confidence 86 77643333322222
Q ss_pred -ch---------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHH
Q 015762 178 -KF---------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATV 229 (401)
Q Consensus 178 -nF---------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~ 229 (401)
+| |++++|+++. |+.||+|++|.||+|+|++ ++..++|.+++
T Consensus 540 ~~f~L~Y~~e~~~~~~~pv~ihrai~GsiERli~iL~e~~----~g~~p~wlsp~qv~Vipv~------~~~~~~A~~va 609 (686)
T PLN02908 540 IRFKLSYSAEDEAKIERPVMIHRAILGSVERMFAILLEHY----AGKWPFWLSPRQAIVVPIS------EKSQDYAEEVR 609 (686)
T ss_pred hhcCCEEECCCCCcCCCCEEEEeCceEhHHHHHHHHHHHc----CCCCCCCCCCceEEEEEEC------HHHHHHHHHHH
Confidence 01 9999998864 3689999999999999998 56789999999
Q ss_pred HHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 230 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 230 ~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
+.||++|++|++|.++ .++++|+++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.+.++.+.
T Consensus 610 ~~LR~~Gi~vevd~~~-~~l~kkir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~ 684 (686)
T PLN02908 610 AQLHAAGFYVDVDVTD-RKIQKKVREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAE 684 (686)
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhh
Confidence 9999999999999987 59999999999999999999999999999999999999999999999998888776553
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-48 Score=417.52 Aligned_cols=284 Identities=21% Similarity=0.355 Sum_probs=248.2
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..++|+++|+|.|+.+|+.|++++++.+.++||++|.||+|++.++|.+ +||++.+.++||.|.|.++ +.++|||
T Consensus 257 ~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~-~g~~~~~~~~my~~~d~~~----~~~~LRP 331 (638)
T PRK00413 257 EEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWET-SGHWDHYRENMFPTTESDG----EEYALKP 331 (638)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHh-cCChhhhhhccceeecCCC----cEEEEec
Confidence 3469999999999999999999999999999999999999999999975 7999999999999999875 8999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCC-CCcccchhheeccceeecCChhhH-H-HHHHHHHHHHHHHh
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP-TPFIRSREFLWQEGHTAFATKSEA-D-DEILELYRRIYEEF 161 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~-~gllR~REF~q~e~~~~~~~~~~a-~-~eil~~~~~i~~~l 161 (401)
|+|++++++++++..||++||+|+||+|+|||||.++. .|+.|+|||+|+|+|+++.+...+ + +|+++++.++|+.+
T Consensus 332 ~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~l 411 (638)
T PRK00413 332 MNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDF 411 (638)
T ss_pred CCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999994422 599999999999999976554443 3 66999999999998
Q ss_pred Cccc-E--EecC--------CCCcc-----------------------------cc------------------------
Q 015762 162 LAVP-V--IKGK--------KSELE-----------------------------NS------------------------ 177 (401)
Q Consensus 162 ~~ip-v--~~g~--------k~~~e-----------------------------~f------------------------ 177 (401)
| ++ + ..+. ...|+ ++
T Consensus 412 g-~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 490 (638)
T PRK00413 412 G-FEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLP 490 (638)
T ss_pred C-CceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCCeEEeccEeecccCh
Confidence 6 53 2 1111 10000 00
Q ss_pred -ch--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHH
Q 015762 178 -KF--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 230 (401)
Q Consensus 178 -nF--------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~ 230 (401)
.| |+|++|++.++ ..||+|++|.||+|+|++ ++..++|.+|++
T Consensus 491 ~~~dl~Yt~~~~~~~~p~~i~~~~~g~~eRli~~l~e~~~----~~~p~~~~p~~v~Ii~~~------~~~~~~a~~i~~ 560 (638)
T PRK00413 491 ERFDLTYVGEDGEKHRPVMIHRAILGSMERFIGILIEHYA----GAFPTWLAPVQVVVLPIT------DKHADYAKEVAK 560 (638)
T ss_pred hhcCCEEECCCCCccCcEEEEecceehHHHHHHHHHHHcC----CCCCcccCcceEEEEEeC------hhHHHHHHHHHH
Confidence 01 99999988864 379999999999999997 567789999999
Q ss_pred HHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 231 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 231 ~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
.||++|++|++|+++ .++|+|+++|++.|+|++|+||++|+++|+|+|++|++++|..++++++++.+.++++.
T Consensus 561 ~Lr~~gi~v~~d~~~-~~l~kki~~A~~~g~~~~iiiG~~E~~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~ 634 (638)
T PRK00413 561 KLKAAGIRVEVDLRN-EKIGYKIREAQLQKVPYMLVVGDKEVEAGTVSVRRRGGKDLGTMSLDEFIERLLEEIAS 634 (638)
T ss_pred HHHhCCCEEEEECCC-CCHhHHHHHhhccCCCEEEEEcchhhhcCeEEEEECCCCccceeeHHHHHHHHHHHHhh
Confidence 999999999999987 59999999999999999999999999999999999999999999999999988877764
No 17
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.9e-48 Score=398.88 Aligned_cols=289 Identities=18% Similarity=0.274 Sum_probs=244.0
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHH--cCCeEeccCCccChhhhhhhccCcccccccceEEEecC---------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--------- 72 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~--~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g--------- 72 (401)
|..++|++||+|.|..|+++|++++++.+.. .||++|.||++.+.++| +.||||+.|.+.||.....+
T Consensus 24 y~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~-~~SGH~~~f~d~m~~~~~~~~~~r~d~~~ 102 (456)
T PRK04173 24 YGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVW-EASGHVDNFSDPLVECKKCKKRYRADHLI 102 (456)
T ss_pred ccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHH-hhcCCccccCCceeEeCCCCCEeechhhh
Confidence 5679999999999999999999999999987 89999999999999999 58999999999999885211
Q ss_pred ------------------------------CC--------------------CCCCcEEEcCCCChhHHHHHHHhHhcCC
Q 015762 73 ------------------------------ES--------------------DLEVPIAIRPTSETVMYPYFSKWIRGHR 102 (401)
Q Consensus 73 ------------------------------~~--------------------~l~~~l~LRPt~e~~i~~~~~~~i~s~~ 102 (401)
+. .-+..++|||+.+++|+.+|++|++|||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr 182 (456)
T PRK04173 103 EELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTAR 182 (456)
T ss_pred HHHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhcc
Confidence 10 0124688999999999999999999999
Q ss_pred -CCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHhCccc---EEe-------
Q 015762 103 -DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAVP---VIK------- 168 (401)
Q Consensus 103 -~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l~~ip---v~~------- 168 (401)
+||++++|||+|||||.+|..||+|+|||+|+|+|+ ||+++++.+| +++++..+|..+| ++ +..
T Consensus 183 ~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hi-F~~peq~~~e~~~~l~~~~~~l~~lG-~~~~~~~~s~~~~~e 260 (456)
T PRK04173 183 KKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEF-FVKPGTDNEWFAYWIELRKNWLLDLG-IDPENLRFREHLPEE 260 (456)
T ss_pred ccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEE-EECcChHHHHHHHHHHHHHHHHHHcC-CCccceEEEecCcch
Confidence 999999999999999999866999999999999996 9999999888 7888889998875 54 100
Q ss_pred -----------------cC----------CC-----Cc---ccc-------------------c--h---HHHHHHHHHc
Q 015762 169 -----------------GK----------KS-----EL---ENS-------------------K--F---VQIGVMVMVH 189 (401)
Q Consensus 169 -----------------g~----------k~-----~~---e~f-------------------n--F---Rli~~li~~~ 189 (401)
|. ++ .. .+| + + |++.++++.|
T Consensus 261 ~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~~~~~~~~P~vi~~siGieRl~~ail~~~ 340 (456)
T PRK04173 261 LAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDETTGEKYIPYVIEPSAGLDRLLLAFLEDA 340 (456)
T ss_pred hhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecCCCCceeeeEEEEecccHHHHHHHHHHHH
Confidence 10 00 00 011 1 1 9777766655
Q ss_pred CCC---------CCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhC
Q 015762 190 GDD---------KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKG 260 (401)
Q Consensus 190 ~dd---------~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~G 260 (401)
.++ .|+.||+|+||+||+|+|++.+ ++..++|.+|++.||++ ++|++|++ .++|+|+++|++.|
T Consensus 341 ~~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~----~e~~~~A~~la~~LR~~-irVelD~~--~slgkkir~A~~~G 413 (456)
T PRK04173 341 YTEEELGGGDKRTVLRLPPALAPVKVAVLPLVKK----EKLSEKAREIYAELRKD-FNVDYDDS--GSIGKRYRRQDEIG 413 (456)
T ss_pred cccccccCCcceeEEECCCcCCCCEEEEEEecCc----HHHHHHHHHHHHHHHhc-CEEEEeCC--CCHHHHHHHHHHcC
Confidence 433 2478999999999999999831 35789999999999999 99999964 38999999999999
Q ss_pred CCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015762 261 VPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 302 (401)
Q Consensus 261 vP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~ 302 (401)
+|++|+||++|+++|+|+|++|+++++..++++++++.+.++
T Consensus 414 ip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 414 TPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred CCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 999999999999999999999999999999999988777543
No 18
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-46 Score=378.74 Aligned_cols=281 Identities=20% Similarity=0.246 Sum_probs=241.7
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCccc-ccccceEEEecCCCCCCCc
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG-FAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~-f~~e~y~~~~~g~~~l~~~ 79 (401)
|..+..+|||+||+|..+.+|++|.+.+++.+++|||.+|.||+||.+++|.+++|.... ..+|||.|+|+|+ +.
T Consensus 1 ~~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkgg----r~ 76 (429)
T COG0124 1 MMKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGG----RS 76 (429)
T ss_pred CCCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCC----CE
Confidence 456788999999999999999999999999999999999999999999999988886544 6899999999985 99
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
++|||+.|+++.+++..+.... .+|+|+|++|+||||| +||+| |+|||+|++++++|.+.+.+|+|++.+..++++
T Consensus 77 laLRpe~Tapv~R~~~en~~~~-~~p~k~yy~g~vfRyE-rPQ~G--R~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~ 152 (429)
T COG0124 77 LALRPELTAPVARAVAENKLDL-PKPLKLYYFGPVFRYE-RPQKG--RYRQFYQFGVEVIGSDSPDADAEVIALAVEILE 152 (429)
T ss_pred EEecccCcHHHHHHHHhccccc-cCCeeEEEecceecCC-CCCCC--CceeeEEcCeEEeCCCCcccCHHHHHHHHHHHH
Confidence 9999999999999998776544 4899999999999999 99999 999999999999999999999999999999999
Q ss_pred HhCccc-E--Eec-CC-----------C----------Ccc---------------------------------------
Q 015762 160 EFLAVP-V--IKG-KK-----------S----------ELE--------------------------------------- 175 (401)
Q Consensus 160 ~l~~ip-v--~~g-~k-----------~----------~~e--------------------------------------- 175 (401)
.+| +. + ..+ .+ + ..+
T Consensus 153 ~lG-i~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~ 231 (429)
T COG0124 153 ALG-IGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPE 231 (429)
T ss_pred HcC-CCcEEEEEcCcccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHH
Confidence 986 32 1 000 00 0 000
Q ss_pred -----------cc----------------c--------------------------------------------------
Q 015762 176 -----------NS----------------K-------------------------------------------------- 178 (401)
Q Consensus 176 -----------~f----------------n-------------------------------------------------- 178 (401)
.| |
T Consensus 232 i~~~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavG 311 (429)
T COG0124 232 LLDYLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVG 311 (429)
T ss_pred hhhhccHHHHHHHHHHHHHHHHcCCCEEEccceecchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCcee
Confidence 00 0
Q ss_pred h-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHH
Q 015762 179 F-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKY 253 (401)
Q Consensus 179 F-----Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~ 253 (401)
| |++.+|.+. |... +.-++.+|+|++++. ....+|.++++.||++|++|++|... +++++||
T Consensus 312 FaiGveRl~~~l~~~-----~~~~-~~~~~~~v~v~~~~~------~~~~~a~~la~~LR~~g~~~~~~~~~-r~~k~q~ 378 (429)
T COG0124 312 FAIGVERLILALEEE-----GKED-PVETRVDVYVVPLGE------DAEPEALKLAQKLRAAGISVEVDYSG-RKLKKQF 378 (429)
T ss_pred EehHHHHHHHHHHHc-----CCCC-CcCCCCCEEEEEcCc------hhHHHHHHHHHHHHHcCCcEEEEecc-ccHHHHH
Confidence 0 999888654 2222 234678999999983 34689999999999999999999987 4799999
Q ss_pred HHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 254 SHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 254 ~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
++|++.|++++|+||++|+++|+|+||++.||+|..++++++++.+...+
T Consensus 379 k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 379 KYADKLGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred HHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999887643
No 19
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-44 Score=371.26 Aligned_cols=281 Identities=25% Similarity=0.380 Sum_probs=248.7
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
...|++.|+|.|..+++.|+++++.....+||++|.||++...++| +.||||+.|.+.||.+...+ +.++|||+
T Consensus 208 ~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~-~~SGH~~~y~e~mf~~~~~~-----~~~~lKpm 281 (589)
T COG0441 208 EGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELW-ELSGHWDNYKEDMFLTESDD-----REYALKPM 281 (589)
T ss_pred cCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccc-hhccchhhccccceeeccCC-----hhheeeec
Confidence 5899999999999999999999999999999999999999999999 47999999999999887653 89999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCC-CcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHh
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEF 161 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l 161 (401)
.|+.++.+|++...|||+||+|++++|.|||+|.++.. ||.|+|.|+|.|+|+ +|+.++..+| ++++...+++.+
T Consensus 282 NCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~~~i~~v~~~f 360 (589)
T COG0441 282 NCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGILELILEVYKDF 360 (589)
T ss_pred cCHhHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999877 999999999999999 7888899888 566667777777
Q ss_pred Cccc-EE--ecCC-------CCcccc------------------------------------------------------
Q 015762 162 LAVP-VI--KGKK-------SELENS------------------------------------------------------ 177 (401)
Q Consensus 162 ~~ip-v~--~g~k-------~~~e~f------------------------------------------------------ 177 (401)
| +. +. ...+ ..|+++
T Consensus 361 g-~~~y~~~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpe 439 (589)
T COG0441 361 G-FTDYEVKLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPE 439 (589)
T ss_pred C-CceEEEEEecCCcccCChhhhHHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChh
Confidence 5 43 21 1111 111110
Q ss_pred ch--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHH
Q 015762 178 KF--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEK 231 (401)
Q Consensus 178 nF--------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~ 231 (401)
+| |.+++|++++. +.+|.|+||+||+|+|++ ++..++|.++++.
T Consensus 440 RF~l~Yv~~d~~~~~PvmiHrai~GSiERfi~iLiE~~~----G~~P~WLaPvQv~VipV~------~~~~~ya~~v~~~ 509 (589)
T COG0441 440 RFDLEYVDEDGEKKRPVIIHRAILGSIERFIGILLEHYA----GALPTWLAPVQVRVIPVA------DEHLDYAKEVAEK 509 (589)
T ss_pred hceEEEEcCCCCccCCEEEEeccchhHHHHHHHHHHhcc----CCCcccCCccEEEEEEeC------hHHHHHHHHHHHH
Confidence 11 99999999654 489999999999999998 5677999999999
Q ss_pred HhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 232 LCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 232 Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
|++.||||.+|++++ ++|+|++.|...+||+.|+||.+|+++++|++++|.+.++..++++++++.+++....
T Consensus 510 L~~~giRvdvD~~~e-~l~kKIR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~ 582 (589)
T COG0441 510 LRKAGIRVDIDDRNE-KLGKKIREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEG 582 (589)
T ss_pred HHHcCCeeeeccccc-chHHHHHHHHhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhc
Confidence 999999999999975 9999999999999999999999999999999999999988889999999988877654
No 20
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-42 Score=351.99 Aligned_cols=283 Identities=14% Similarity=0.142 Sum_probs=241.9
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhcc-CcccccccceEEEecCCCCCCCc
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~g-h~~~f~~e~y~~~~~g~~~l~~~ 79 (401)
|+...+++|+.||+|..+..|+.|++.+++.++++||++|.||+|++.++|.+.+| |++.+.++||.|.|.++ +.
T Consensus 1 ~~~~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g----~~ 76 (430)
T CHL00201 1 MAKIQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSN----RD 76 (430)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCC----CE
Confidence 67788999999999999999999999999999999999999999999999987656 77768899999999874 89
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
++|||+.|++++++++....+++++|+|+||+|+|||+| +||.| |+|||+|.|+|++|.+...||+|++.+..++++
T Consensus 77 l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e-~~q~G--R~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~ 153 (430)
T CHL00201 77 ITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYE-RPQSG--RQRQFHQLGIEFIGSIDARADTEVIHLAMQIFN 153 (430)
T ss_pred EEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCC-CCcCC--ccceeEEeceEEECCCChhhHHHHHHHHHHHHH
Confidence 999999999999998776667778999999999999999 78999 999999999999999999999999999999998
Q ss_pred HhCccc---EEecC-------------------------------------------CCCc--c----------------
Q 015762 160 EFLAVP---VIKGK-------------------------------------------KSEL--E---------------- 175 (401)
Q Consensus 160 ~l~~ip---v~~g~-------------------------------------------k~~~--e---------------- 175 (401)
.+| ++ +..|. +... +
T Consensus 154 ~lG-l~~~~i~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~ 232 (430)
T CHL00201 154 ELQ-VKNLILDINSIGKLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLES 232 (430)
T ss_pred HcC-CCceEEEECCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHH
Confidence 886 32 21110 0000 0
Q ss_pred --c--------------c------------------------------------------ch---------------HHH
Q 015762 176 --N--------------S------------------------------------------KF---------------VQI 182 (401)
Q Consensus 176 --~--------------f------------------------------------------nF---------------Rli 182 (401)
. + .| |++
T Consensus 233 ~~~l~~~~~~l~~~g~~~~~Dl~lvRgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~PavGfa~g~erl~ 312 (430)
T CHL00201 233 TEHFYDVCTYLNLLNIPYKINYKLVRGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAVGCAIGLERLL 312 (430)
T ss_pred HHHHHHHHHHHHHcCCcEEECcccccCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCeeEEEecHHHHH
Confidence 0 0 01 888
Q ss_pred HHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCC
Q 015762 183 GVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVP 262 (401)
Q Consensus 183 ~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP 262 (401)
.+|.+. ...|. .|.+|+|+|++ ++...+|.++++.||++|++|++|... .++++++++|++.|+|
T Consensus 313 ~~l~~~------~~~~~--~~~~v~v~~~~------~~~~~~a~~ia~~LR~~Gi~veid~~~-~~l~k~~k~A~~~~~~ 377 (430)
T CHL00201 313 LIAKDN------IILPK--QSIDVYIATQG------LKAQKKGWEIIQFLEKQNIKFELDLSS-SNFHKQIKQAGKKRAK 377 (430)
T ss_pred HHHhcc------ccCCC--CCCCEEEEEcC------HHHHHHHHHHHHHHHhCCCeEEEeeCC-CCHHHHHHHHHHcCCC
Confidence 766431 22332 56789999987 557789999999999999999999987 4899999999999999
Q ss_pred EEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHH
Q 015762 263 LRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEV 306 (401)
Q Consensus 263 ~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~ 306 (401)
++++||++|+++|+|+|+++.++++.+++++++++.+.++.+.|
T Consensus 378 ~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~~~ 421 (430)
T CHL00201 378 ACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLKKKI 421 (430)
T ss_pred EEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988887776654
No 21
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-42 Score=327.39 Aligned_cols=284 Identities=19% Similarity=0.316 Sum_probs=240.1
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
...+|++-|+|.|.+..+++.+.++..++..|.+.|..|++-++++|+ ++|+|+...+|+|.+.|+.+ ..+||-|
T Consensus 39 ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWe-kTgRw~~~gsEl~rl~Dr~g----kq~cL~p 113 (457)
T KOG2324|consen 39 PSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWE-KTGRWDAMGSELFRLHDRKG----KQMCLTP 113 (457)
T ss_pred cCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHH-hcCcccccchhheEeeccCC----CEeccCC
Confidence 457899999999999999999999999999999999999999999996 79999999999999999875 8999999
Q ss_pred CCChhHHHHHHHhHh-cCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHH
Q 015762 85 TSETVMYPYFSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEE 160 (401)
Q Consensus 85 t~e~~i~~~~~~~i~-s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~ 160 (401)
|.|..++.+++..+. ||++||+++||+|..||+|.||..||+|.|||+|.|+++|..+.+.|.+. +.++|.+||++
T Consensus 114 ThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkq 193 (457)
T KOG2324|consen 114 THEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQ 193 (457)
T ss_pred chHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 99999999999999999999988899999999999999988888888776 89999999999
Q ss_pred hCcccEEe---------cCCC------------------------Ccccc------------------------------
Q 015762 161 FLAVPVIK---------GKKS------------------------ELENS------------------------------ 177 (401)
Q Consensus 161 l~~ipv~~---------g~k~------------------------~~e~f------------------------------ 177 (401)
++ +|++. |.-+ ..|.+
T Consensus 194 L~-~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~L 272 (457)
T KOG2324|consen 194 LG-LPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLL 272 (457)
T ss_pred cC-CCeEEEeecccccCceeeeeEeccCccCccceeecCcCCccCchhhhcCCccccCCcccCCCcccccceEEEEEEEe
Confidence 86 88632 1110 00111
Q ss_pred ----------ch--------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHH
Q 015762 178 ----------KF--------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTA 227 (401)
Q Consensus 178 ----------nF--------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~ 227 (401)
.| |+|+|.++.-+||+|++||..+||++|.+|+..+.+ ....+.+
T Consensus 273 G~kYS~~lna~f~~~~gKpe~l~MgCyGIGVtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~-----~~q~~~e 347 (457)
T KOG2324|consen 273 GTKYSKPLNAKFVNVEGKPEFLHMGCYGIGVTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGS-----KSQRAQE 347 (457)
T ss_pred ccccccccCceeeeecCCcceEEecceeccHHHHHHHHHHHhccccccccccccCcceeEEeccCCcc-----hhhhHHH
Confidence 01 999999999999999999999999999655544322 2234445
Q ss_pred HHHHHhhC------CCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeC-ccccCCCeEEEEECCCCceeeechhhHHHHH
Q 015762 228 TVEKLCEA------GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG-PKDLANDQVRAVRRDNGAKIDLPRGSLVERV 299 (401)
Q Consensus 228 l~~~Lr~~------Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG-~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i 299 (401)
++++|-.. --.+..|||.+.++|+++++|++.|+|++|+|| ..-..+..+.|..+.+|+...+..+++...+
T Consensus 348 v~~el~~~~~~~~l~~~iLlddr~~ltiG~Ri~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~ 426 (457)
T KOG2324|consen 348 VISELLNDEAVGNLHGEILLDDREELTIGKRIKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLL 426 (457)
T ss_pred HHHHhhcchhhhhhccceeccchhhhhhHHhhhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHh
Confidence 55544321 125788999889999999999999999999999 6777788999999988987777766665443
No 22
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=1e-39 Score=338.00 Aligned_cols=271 Identities=17% Similarity=0.230 Sum_probs=229.5
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|++..+++|++||+|.++.+++.|++.+++.|+++||++|.||+||+.++|.++.|. ...++||.|.|+++ +.+
T Consensus 67 ~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~--~~~~~~y~f~D~~g----~~l 140 (487)
T PLN02530 67 KIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGE--EITDQLYNFEDKGG----RRV 140 (487)
T ss_pred ccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCc--ccccceEEEECCCC----CEE
Confidence 345788999999999999999999999999999999999999999999999876663 46789999999875 899
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
+|||+.|++++++++....+. ++|+|+||+|+|||+| +||+| |+|||+|.++|++|.+...||+|++.++.++|+.
T Consensus 141 ~LRpD~T~~iaR~~~~~~~~~-~~P~r~~y~g~vfR~e-~~q~g--r~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~ 216 (487)
T PLN02530 141 ALRPELTPSLARLVLQKGKSL-SLPLKWFAIGQCWRYE-RMTRG--RRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKR 216 (487)
T ss_pred ecCCCCcHHHHHHHHhccccc-CCCeEEEEEcCEEcCc-CCCCC--CccceEEcCeeEeCCCCcchhHHHHHHHHHHHHH
Confidence 999999999999998766543 7999999999999999 78999 9999999999999999999999999999999998
Q ss_pred hCccc---E--EecCC-------------C-----------Cccc-----c-----------------------------
Q 015762 161 FLAVP---V--IKGKK-------------S-----------ELEN-----S----------------------------- 177 (401)
Q Consensus 161 l~~ip---v--~~g~k-------------~-----------~~e~-----f----------------------------- 177 (401)
++ ++ + ..|.. . ..++ +
T Consensus 217 lg-l~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~~l 295 (487)
T PLN02530 217 VG-ITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDL 295 (487)
T ss_pred cC-CCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHHHH
Confidence 86 43 2 11100 0 0000 0
Q ss_pred ----------------------------------------c------h--------------------------------
Q 015762 178 ----------------------------------------K------F-------------------------------- 179 (401)
Q Consensus 178 ----------------------------------------n------F-------------------------------- 179 (401)
+ |
T Consensus 296 ~~~~~~~~~~l~~L~~l~~~l~~~g~~~~i~~Dl~lvrgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~pA 375 (487)
T PLN02530 296 EALLGADSEAVADLKQLFSLAEAYGYQDWLVFDASVVRGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDTPA 375 (487)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHcCCCccEEEecccccCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCCCe
Confidence 0 0
Q ss_pred --------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHH
Q 015762 180 --------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGW 251 (401)
Q Consensus 180 --------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~ 251 (401)
|++.+| .. +| .+|.+.+|.||+|++++ ++...+|.++++.||++|++|++|..+ .++++
T Consensus 376 vGFa~g~~~l~~~l-~~----~g-~~p~~~~~~dVlVi~~~------~~~~~~A~~ia~~LR~~Gi~vevd~~~-~~l~k 442 (487)
T PLN02530 376 CGFGFGDAVIVELL-KE----KG-LLPELPHQVDDVVFALD------EDLQGAAAGVASRLREKGRSVDLVLEP-KKLKW 442 (487)
T ss_pred eEEEEhHHHHHHHH-Hh----cC-CCCCCCCCCcEEEEEcC------hHHHHHHHHHHHHHHHCCCeEEEecCC-CCHHH
Confidence 222222 22 23 36778889999999987 457789999999999999999999987 48999
Q ss_pred HHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhH
Q 015762 252 KYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 295 (401)
Q Consensus 252 k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el 295 (401)
++++|++.|+|++|+||++|+++|+|+||++.+|++..++++++
T Consensus 443 ~ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 443 VFKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred HHHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 99999999999999999999999999999999999999988764
No 23
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-40 Score=322.13 Aligned_cols=278 Identities=22% Similarity=0.317 Sum_probs=243.8
Q ss_pred CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCC
Q 015762 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (401)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~ 86 (401)
.+|-..|+|.|.+|++.+.++++..+.+.||+||.||.+.+..||+ .||||+.|.++||.|.-. .+.++|.|+.
T Consensus 181 SPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe-~SGHwqnY~enmF~~e~e-----ke~~~LKPMN 254 (560)
T KOG1637|consen 181 SPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWE-TSGHWQNYSENMFKFEVE-----KEEFALKPMN 254 (560)
T ss_pred CCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhh-hccchhhhhhhceeeeec-----hhhhccCccC
Confidence 5789999999999999999999999999999999999999999996 799999999999999874 3789999999
Q ss_pred ChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCC-CcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHhC
Q 015762 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT-PFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFL 162 (401)
Q Consensus 87 e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~-gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l~ 162 (401)
|++++.||++.-+|||+||+|+..+|.++|+|.++.. ||.|+|.|+|.|+|+ +|+.++..+| +++....+|.-+|
T Consensus 255 CPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~~l~fl~~vY~~fg 333 (560)
T KOG1637|consen 255 CPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKGCLDFLDYVYGVFG 333 (560)
T ss_pred CCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999888 999999999999999 8899998888 7777777887554
Q ss_pred cccEEecCCCCcccc----------------------------------------------------------c------
Q 015762 163 AVPVIKGKKSELENS----------------------------------------------------------K------ 178 (401)
Q Consensus 163 ~ipv~~g~k~~~e~f----------------------------------------------------------n------ 178 (401)
+.+-....|++++| +
T Consensus 334 -f~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQLDFqLP~r 412 (560)
T KOG1637|consen 334 -FTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQLDFQLPIR 412 (560)
T ss_pred -ccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeeeecccChhh
Confidence 32221222222222 1
Q ss_pred h--------------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHH
Q 015762 179 F--------------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKL 232 (401)
Q Consensus 179 F--------------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~L 232 (401)
| |+++.|++.++ ..||.|++|.|++|||++ +....+|.++.+.|
T Consensus 413 FdL~y~~~~g~~erPVmIHRAIlGSvERmiaiL~E~~~----gkwPFWlSPRq~~vIpVs------e~~~~ya~~V~~ql 482 (560)
T KOG1637|consen 413 FDLEYETEDGDLERPVMIHRAILGSVERMIAILLESYG----GKWPFWLSPRQAVVIPVS------EGPLDYATSVQKQL 482 (560)
T ss_pred cCceeecccccccchhhHHHHHhhhHHHHHHHHHHHhC----CCCCeeeccceEEEEECC------CcchhHHHHHHHHH
Confidence 1 99999999865 799999999999999999 56789999999999
Q ss_pred hhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCC---ceeeechhhHHHHHHHHH
Q 015762 233 CEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG---AKIDLPRGSLVERVKELL 303 (401)
Q Consensus 233 r~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg---~k~~v~~~el~~~i~~~l 303 (401)
..+|+-+.+|..+ .+++++++.|......+.++||++|++.++|.|+.|++. .+..++++++.+.+.++-
T Consensus 483 ~~a~f~~Dld~t~-~tl~kkir~Aqla~yn~i~VVGdkE~~~~~vnVr~Rd~~~~~~~~~~tie~~~~~~~~l~ 555 (560)
T KOG1637|consen 483 EEAGFYVDLDPTD-STLRKKIRNAQLAHYNFIFVVGDKEVETGRVNVRTRDNRDNKTESEMTIEELSDEFKELK 555 (560)
T ss_pred HhhhceeecCCcc-chHHHHHhhhhhcceeEEEEEchhhhhcCceeeeccccccccccceeeHHHHHHHHHHhH
Confidence 9999999999988 599999999999999999999999999999999999544 455788888877776553
No 24
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=1.8e-39 Score=311.30 Aligned_cols=176 Identities=31% Similarity=0.484 Sum_probs=162.6
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCccc-ccccceEEEecCCCCCCCc
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEG-FAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~-f~~e~y~~~~~g~~~l~~~ 79 (401)
|+++.+++|+++|+|.|+.+|++|++++++.++++||++|.||+|++.++|. ++||+.. |.+|+|++++.++++++++
T Consensus 15 ~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~~ 93 (264)
T cd00772 15 LADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEED 93 (264)
T ss_pred CccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCce
Confidence 5788889999999999999999999999999999999999999999999995 6888776 6699999999887667789
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRR 156 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~ 156 (401)
++||||+|++++.++++++.||++||+|+|||++|||+|.+|++||+|+|||+|+|+|++|++.++|++| ++++|.+
T Consensus 94 l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~ 173 (264)
T cd00772 94 FALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAE 173 (264)
T ss_pred EEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988999999999999999999999999998 8899999
Q ss_pred HHHHhCcccEEecCCCCcccc
Q 015762 157 IYEEFLAVPVIKGKKSELENS 177 (401)
Q Consensus 157 i~~~l~~ipv~~g~k~~~e~f 177 (401)
+|++++++|+..+..+.+++|
T Consensus 174 i~~~l~~lp~~~~~~~~~d~~ 194 (264)
T cd00772 174 IARDLAAIDFIEGEADEGAKF 194 (264)
T ss_pred HHHhcCCccEEEEEcCCCccc
Confidence 999998799877766655544
No 25
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-37 Score=317.04 Aligned_cols=273 Identities=20% Similarity=0.248 Sum_probs=229.1
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc-cccccceEEEecCCCCCCCc
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~-~f~~e~y~~~~~g~~~l~~~ 79 (401)
|+++..++|+++|+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+.+|+.. .+.++||.|.|.++ +.
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g----~~ 76 (412)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGG----RS 76 (412)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCC----CE
Confidence 56788999999999999999999999999999999999999999999999976667653 35789999998754 89
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
++|||+.|+++++++++.. .+|+|+||+|+|||+| +++.| |.|||+|.++|+++.+...+++|++.++.++++
T Consensus 77 l~LRpd~T~~~ar~~~~~~----~~p~r~~~~g~vfR~e-~~~~g--r~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~ 149 (412)
T PRK00037 77 LTLRPEGTAPVVRAVIEHK----LQPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEVIALAADILK 149 (412)
T ss_pred EEecCCCcHHHHHHHHhCC----CCCeEEEEEcCccccC-CCCCC--cccceEEcCeeeeCCCCcchhHHHHHHHHHHHH
Confidence 9999999999999887642 2999999999999999 66778 999999999999999988899999999999998
Q ss_pred HhCcccE--E-----------------------ecCCC-----------------------------Cccc---c-----
Q 015762 160 EFLAVPV--I-----------------------KGKKS-----------------------------ELEN---S----- 177 (401)
Q Consensus 160 ~l~~ipv--~-----------------------~g~k~-----------------------------~~e~---f----- 177 (401)
.++ ++- + .+... ..++ |
T Consensus 150 ~lg-~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (412)
T PRK00037 150 ALG-LKGLKLLINSLGDFEIRANYRKALVGFLEKGLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEES 228 (412)
T ss_pred HcC-CCceeeeeccCCCHHHhHHHHHHHHHHHHhCchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHHH
Confidence 875 320 0 00000 0000 0
Q ss_pred ----------------------------c--------------------------------h---------------HHH
Q 015762 178 ----------------------------K--------------------------------F---------------VQI 182 (401)
Q Consensus 178 ----------------------------n--------------------------------F---------------Rli 182 (401)
+ | |++
T Consensus 229 ~~~l~~l~~~l~~~~~~i~~Dl~~~r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pavGfs~~le~l~ 308 (412)
T PRK00037 229 KEHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAVGFAIGVERLL 308 (412)
T ss_pred HHHHHHHHHHHHHcCCCEEECCCcccChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceEEEEEcHHHHH
Confidence 0 1 555
Q ss_pred HHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCC
Q 015762 183 GVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVP 262 (401)
Q Consensus 183 ~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP 262 (401)
.+|.+.. . +|.||+|+|++ ++...++.++++.||++|++|++|..+ .++++++++|+++|+|
T Consensus 309 ~~l~~~~-----~------~~~~vlI~~~~------~~~~~~a~~i~~~Lr~~Gi~v~i~~~~-~~~~~~~~~a~~~gi~ 370 (412)
T PRK00037 309 LLLEELG-----E------EPVDVYVVPLG------EDAELAALKLAEKLRAAGIRVELDYGG-RKLKKQFKYADKSGAR 370 (412)
T ss_pred HHHHhcC-----C------CCCCEEEEEeC------hHHHHHHHHHHHHHHHCCCeEEEeCCC-CCHHHHHHHHHHcCCC
Confidence 5444321 1 78899999987 446678999999999999999999876 4899999999999999
Q ss_pred EEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 263 LRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 263 ~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
++|+||++|+++|+|+|+++++|++..++++++++.|++.+
T Consensus 371 ~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 371 FVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred EEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998887654
No 26
>PLN02734 glycyl-tRNA synthetase
Probab=100.00 E-value=1e-37 Score=326.14 Aligned_cols=289 Identities=22% Similarity=0.304 Sum_probs=231.3
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHH-HcCCeEeccCCccChhhhhhhccCcccccccceEEEecC----------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g---------- 72 (401)
|+.++|+|||.|.|..+.++|++.|++.|- ..++-+|++|+|.|..+| +.|||++.|.+=|-..+..|
T Consensus 95 YGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~-kASGHvd~F~D~mv~~~~~~~~~RADhlie 173 (684)
T PLN02734 95 YGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVL-KASGHVDKFTDLMVKDEKTGTCFRADHLLK 173 (684)
T ss_pred cCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHe-eecCCcccccceeeEcCCCCcEecchHHHH
Confidence 678999999999999999999999999994 457789999999999999 68999999998443222111
Q ss_pred --------------------------------------------------CCCC------------------CCcEEEcC
Q 015762 73 --------------------------------------------------ESDL------------------EVPIAIRP 84 (401)
Q Consensus 73 --------------------------------------------------~~~l------------------~~~l~LRP 84 (401)
+.+| +....|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRP 253 (684)
T PLN02734 174 DFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRP 253 (684)
T ss_pred HHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecc
Confidence 0011 13689999
Q ss_pred CCChhHHHHHHHhHhcCC-CCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChh-------------------
Q 015762 85 TSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS------------------- 144 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~-~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~------------------- 144 (401)
+..++|+.-|++.+..++ .||+-..|+|+.||+|.+|..|++|+|||+|.|++. |++++
T Consensus 254 ETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~-Fv~P~~k~h~~f~~v~~~~l~l~~ 332 (684)
T PLN02734 254 ETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEH-FVDPEDKSHPKFSEVADLEFLLFP 332 (684)
T ss_pred cccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhhe-ecCcccccccchhhhhhhhhhccc
Confidence 999999999999887665 799999999999999999999999999999999998 44443
Q ss_pred ----------------hHHH------H----HHHHHHHHHHHhCccc-------------------------E-------
Q 015762 145 ----------------EADD------E----ILELYRRIYEEFLAVP-------------------------V------- 166 (401)
Q Consensus 145 ----------------~a~~------e----il~~~~~i~~~l~~ip-------------------------v------- 166 (401)
+|.+ | .+.....++..+| |+ +
T Consensus 333 ~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iG-i~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~~GWi 411 (684)
T PLN02734 333 REEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLG-IDKERLRFRQHLANEMAHYAADCWDAEIECSYGWI 411 (684)
T ss_pred HhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcC-CCHHHeeecccCcHHHhhhhhccEeEEEecCCCcE
Confidence 2221 1 2333344555554 33 0
Q ss_pred -EecCC--C----------------------C------------------------------------------------
Q 015762 167 -IKGKK--S----------------------E------------------------------------------------ 173 (401)
Q Consensus 167 -~~g~k--~----------------------~------------------------------------------------ 173 (401)
+.|.. + +
T Consensus 412 E~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~~~l~~ 491 (684)
T PLN02734 412 ECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMKAKLES 491 (684)
T ss_pred EEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcchhHHHHHHHhhhh
Confidence 00110 0 0
Q ss_pred -----------cccc-------------------c---------h---HHHHHHHHHcC-----CC--CCCCCCCCCCCc
Q 015762 174 -----------LENS-------------------K---------F---VQIGVMVMVHG-----DD--KGLMLPPKVASV 204 (401)
Q Consensus 174 -----------~e~f-------------------n---------F---Rli~~li~~~~-----dd--~Gl~lP~~iap~ 204 (401)
.+.| + | |+|+++++++. |+ .|+.|||++||+
T Consensus 492 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R~~L~~Pp~IAP~ 571 (684)
T PLN02734 492 KGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQLNVFRFPPLVAPI 571 (684)
T ss_pred cCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCccHHHHHHHHHHHHhccccCCCcceEEecCcccCCc
Confidence 0000 0 1 99999999887 66 799999999999
Q ss_pred eEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCC
Q 015762 205 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 284 (401)
Q Consensus 205 qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~t 284 (401)
||.|+|+..+ ++..++|.+|++.|+++|++|.+|+++ .++|+|+++|++.|+|++|+||. +|+|+|++|++
T Consensus 572 qVaIlPL~~~----ee~~~~A~eLa~~LR~~GIrVelDd~~-~SIGKRyrrADeiGIPf~ItIG~----dgtVTIRdRds 642 (684)
T PLN02734 572 KCTVFPLVQN----QQLNAVAKVISKELTAAGISHKIDITG-TSIGKRYARTDELGVPFAVTVDS----DGSVTIRERDS 642 (684)
T ss_pred EEEEEEecCC----hHHHHHHHHHHHHHHhCCCEEEEECCC-CCHhHHHHHHHHcCCCEEEEECC----CCeEEEEECCC
Confidence 9999999742 457899999999999999999999987 59999999999999999999996 89999999999
Q ss_pred CceeeechhhHHHHHHHHHH
Q 015762 285 GAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 285 g~k~~v~~~el~~~i~~~l~ 304 (401)
++|..++++++++.|.++++
T Consensus 643 geQ~rV~ldeLv~~I~~li~ 662 (684)
T PLN02734 643 KDQVRVPVEEVASVVKDLTD 662 (684)
T ss_pred CceEEeeHHHHHHHHHHHHc
Confidence 99999999999888766654
No 27
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=100.00 E-value=2.1e-37 Score=319.39 Aligned_cols=290 Identities=20% Similarity=0.291 Sum_probs=231.9
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHH-HcCCeEeccCCccChhhhhhhccCcccccccceEEEecC----------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g---------- 72 (401)
|+.++|++||.|.|..+.++|.+.|++.|. ..|+.+|++|+|.|.++| +.|||++.|.+-|...+..|
T Consensus 23 YgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~-~aSGh~~~F~D~mv~~~~~~~~~RaD~l~e 101 (551)
T TIGR00389 23 YGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVL-KASGHVDNFTDWMVDCKSCKERFRADHLIE 101 (551)
T ss_pred ccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHH-HhcCCccccCCceeecCCCCCEecchHHHH
Confidence 567999999999999999999999999994 778999999999999999 58999999998665433221
Q ss_pred ------------------------------CCCC------------------CCcEEEcCCCChhHHHHHHHhHhcCC-C
Q 015762 73 ------------------------------ESDL------------------EVPIAIRPTSETVMYPYFSKWIRGHR-D 103 (401)
Q Consensus 73 ------------------------------~~~l------------------~~~l~LRPt~e~~i~~~~~~~i~s~~-~ 103 (401)
+..+ +....|||+..++|+..|++...+++ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~~k 181 (551)
T TIGR00389 102 EKLGKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFRRK 181 (551)
T ss_pred HHhhhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhcCCC
Confidence 1111 23689999999999999999887665 7
Q ss_pred CCeEEEeeecceecCCCCCCCcccchhheeccceeecCChh----------------------------hHHHH------
Q 015762 104 LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS----------------------------EADDE------ 149 (401)
Q Consensus 104 LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~----------------------------~a~~e------ 149 (401)
||+-+.|+|++||+|.+|..|++|+|||+|.|++. +++++ +|.+.
T Consensus 182 lPfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~-F~~p~~~~~~~f~~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~ 260 (551)
T TIGR00389 182 LPFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEF-FVHPLDKSHPKFEEVKQDILPLLPRQMQESGIGEAVESGMIENE 260 (551)
T ss_pred CCeeehhhhHhhhcccCcccceEEeehhhhchhhe-ecCcccccchhhHHHHHHHHhhccchhhhccHHHHHHhcccchH
Confidence 99999999999999999988999999999999998 44543 22111
Q ss_pred ----HHHHHHHHHHHhCccc-------------------------E--------EecCC--CC-----------------
Q 015762 150 ----ILELYRRIYEEFLAVP-------------------------V--------IKGKK--SE----------------- 173 (401)
Q Consensus 150 ----il~~~~~i~~~l~~ip-------------------------v--------~~g~k--~~----------------- 173 (401)
.+.....++.++| |+ + +.|.. ++
T Consensus 261 ~~~y~~~~~~~fl~~~G-i~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~ 339 (551)
T TIGR00389 261 TLGYFIARVKQFLLEIG-INPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYGWIECVGIADRGDYDLTQHSKFSGKSLSVF 339 (551)
T ss_pred HHHHHHHHHHHHHHHhC-CCHHHeeecccCcHHHhhhccccEeEEEecCCCcEEEEEeccccccChHHHHHhhCCCeEEE
Confidence 2222245566665 33 0 01110 00
Q ss_pred -cc------------------------------------------------cc---------------------------
Q 015762 174 -LE------------------------------------------------NS--------------------------- 177 (401)
Q Consensus 174 -~e------------------------------------------------~f--------------------------- 177 (401)
.. .|
T Consensus 340 ~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIe 419 (551)
T TIGR00389 340 DKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKYIPHVIE 419 (551)
T ss_pred eecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhccceecchhhhhheeeeeccCCcEecceEEE
Confidence 00 01
Q ss_pred -ch---HHHHHHHHHcCCC--------CCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCC
Q 015762 178 -KF---VQIGVMVMVHGDD--------KGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD 245 (401)
Q Consensus 178 -nF---Rli~~li~~~~dd--------~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~ 245 (401)
.| |++++|+++..+. .++.||+++||+||+|+|+..+ ++...+|.+|++.||++|++|.+|++.
T Consensus 420 pS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~----~el~~~A~eIa~~LR~~GI~VeiD~s~ 495 (551)
T TIGR00389 420 PSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNK----EELKEIAKEIFQALRKTGIRIKYDDSG 495 (551)
T ss_pred cccCHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCc----HHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 01 9999998755441 2579999999999999999742 457889999999999999999999975
Q ss_pred CCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015762 246 NYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 302 (401)
Q Consensus 246 ~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~ 302 (401)
++|+|+++|++.|+|++|+||++++++|+|+|++|++++|..++++++.+.+.++
T Consensus 496 --sIGKq~rrADeiGiPf~IIIG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 496 --TIGKRYRRADEIGTPFCVTIDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred --CHHHHHHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 5999999999999999999999999999999999999999999999988877654
No 28
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.4e-37 Score=309.09 Aligned_cols=292 Identities=20% Similarity=0.266 Sum_probs=231.0
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHH--HHcCCeEeccCCccChhhhhhhccCcccccccceEEEe-----------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK----------- 70 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~--~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~----------- 70 (401)
|+.++|++||.|.|..+.++|++.|++.+ .+-+..++++|+|.|..+| +.|||++.|++-|-..++
T Consensus 26 Ygg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~-~aSGH~~~F~DpmV~CkkCk~ryRaD~Li 104 (539)
T PRK14894 26 YGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVW-KYSGHEETFNDPLVDCRDCKMRWRADHIQ 104 (539)
T ss_pred cCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHe-eeccCCCCCCCceeECCCCCccccCccce
Confidence 57799999999999999999999999988 4667889999999999999 689999999874432221
Q ss_pred -----cCCCCC--------------------CCcEEEcCCCChhHHHHHHHhHhcCC-CCCeEEEeeecceecCCCCCCC
Q 015762 71 -----SGESDL--------------------EVPIAIRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTP 124 (401)
Q Consensus 71 -----~g~~~l--------------------~~~l~LRPt~e~~i~~~~~~~i~s~~-~LPlk~~q~~~vfR~E~~~~~g 124 (401)
.|+.+| +....|||+...+|+..|++-+..++ .||+-+.|+|++||+|.+|..|
T Consensus 105 ikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~ 184 (539)
T PRK14894 105 GVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNF 184 (539)
T ss_pred eeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCc
Confidence 121111 13589999999999999999887555 7999999999999999999889
Q ss_pred cccchhheeccceeecCChhhHHHH---HHHHHHHHHHHhCcccE----------------------------------E
Q 015762 125 FIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAVPV----------------------------------I 167 (401)
Q Consensus 125 llR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l~~ipv----------------------------------~ 167 (401)
++|+|||.|.|++. ++++.++.+. .+.....++..+| |+- +
T Consensus 185 l~R~REF~q~EiE~-Fv~P~~~~~~~~y~~~~~~~fl~~iG-i~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~Gw~E~ 262 (539)
T PRK14894 185 LFRVREFEQMEIEY-FVMPGTDEEWHQRWLEARLAWWEQIG-IPRSRITIYDVPPDELAHYSKRTFDLMYDYPNIGVQEI 262 (539)
T ss_pred eeecccchhheEEE-EeCCCchHHHHHHHHHHHHHHHHHhC-CCHHHeeeeecCcHHhhhhhhccEEEEEECCCCCeEEE
Confidence 99999999999999 5565544333 4555556777775 430 0
Q ss_pred ecC--CCC---------c---------------------------ccc-------ch---HHHHHHHHHcCC--------
Q 015762 168 KGK--KSE---------L---------------------------ENS-------KF---VQIGVMVMVHGD-------- 191 (401)
Q Consensus 168 ~g~--k~~---------~---------------------------e~f-------nF---Rli~~li~~~~d-------- 191 (401)
.|. +++ + ++| .| |++.++++...+
T Consensus 263 ~Gia~RtdyDL~~H~~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViEpS~G~dR~~~a~l~~~y~~~~~~~~~ 342 (539)
T PRK14894 263 EGIANRTDYDLGSHSKDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIEPSAGVGRCMLAVMCEGYAEELTKAIP 342 (539)
T ss_pred EEeecccccCHHHHhhhcccCCceeeeccccCCCceEEEEeccCCcccCCceeecCcchhHHHHHHHHHHHhhhhhcccc
Confidence 011 000 0 000 12 887776553221
Q ss_pred -----------------------------------------------------------------------------C-C
Q 015762 192 -----------------------------------------------------------------------------D-K 193 (401)
Q Consensus 192 -----------------------------------------------------------------------------d-~ 193 (401)
+ .
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 422 (539)
T PRK14894 343 GEKLAAVGDALEAFLKSVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHY 422 (539)
T ss_pred cccccccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCccc
Confidence 1 1
Q ss_pred C--CCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCC-EEEEcCCCCCCHHHHHHHHHHhCCCEEEEe---
Q 015762 194 G--LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGI-RANSDFRDNYSPGWKYSHWEMKGVPLRIEI--- 267 (401)
Q Consensus 194 G--l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Gi-rv~iD~~~~~s~g~k~~~ae~~GvP~~iii--- 267 (401)
. +.||+|+||+||.|+|+..+. +++.++|.+|++.|+++|+ ||.+|++ + ++|+|++.++..|+||.|+|
T Consensus 423 rgvLplp~wLAPvQVaVLPLs~~~---~~l~eyAkeI~~~L~~~Gi~rv~~Dds-e-sIGKKyRraDeiGiPy~ITVD~~ 497 (539)
T PRK14894 423 RTVLRLKPRLAPIKVAVFPLKRNH---EGLVATAKAVRRQLQVGGRMRTVYDDT-G-AIGKLYRRQDEIGTPFCITVDFD 497 (539)
T ss_pred ceecCCCcCCCCceEEEEeccccc---cchHHHHHHHHHHHHHCCCceEEEcCC-C-CHhHHHHhhhccCCCEEEEEecc
Confidence 2 355699999999999998532 3577999999999999998 9999994 3 99999999999999999999
Q ss_pred ----CccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 268 ----GPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 268 ----G~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
|++|+++|+|+||+|++++|..++++++++.|.+.+
T Consensus 498 Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~ 537 (539)
T PRK14894 498 TIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRV 537 (539)
T ss_pred ccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999999887664
No 29
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=1.3e-37 Score=298.35 Aligned_cols=177 Identities=59% Similarity=1.122 Sum_probs=164.1
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+|+++++|+++|+|.|++++++|++++++.+.++||++|.||+|++.++|.+++||+++|.++||++++.+++.+++++
T Consensus 15 ~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~ 94 (261)
T cd00778 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPL 94 (261)
T ss_pred CcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcE
Confidence 46778899999999999999999999999999999999999999999999976799999999999999998765556799
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
+||||+|++++.++++++.||++||+|+||+++|||+|.++++|++|+|||+|.|+|++|+++++++++ ++++|.+|
T Consensus 95 ~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i 174 (261)
T cd00778 95 ALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEF 174 (261)
T ss_pred EEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988999999999999999999999999988 89999999
Q ss_pred HHHhCcccEEecCCCCcccc
Q 015762 158 YEEFLAVPVIKGKKSELENS 177 (401)
Q Consensus 158 ~~~l~~ipv~~g~k~~~e~f 177 (401)
|+.++++|+....++.++++
T Consensus 175 ~~~llgl~~~~~~~~~~d~~ 194 (261)
T cd00778 175 YEDLLAIPVVKGRKTEWEKF 194 (261)
T ss_pred HHHhCCCeEEEecCCccccC
Confidence 99985599987777655543
No 30
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=1.6e-37 Score=296.73 Aligned_cols=158 Identities=21% Similarity=0.389 Sum_probs=148.9
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
.+++|+++|+|.|+.+|++|++++++.++++||++|.||+|++.++|. ++||+++|.+|||+++|.++ ++++|||
T Consensus 18 ~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~-~sg~~~~~~~emy~~~d~~~----~~l~LrP 92 (255)
T cd00779 18 QTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWK-ESGRWDAYGPELLRLKDRHG----KEFLLGP 92 (255)
T ss_pred cCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHH-hcCCccccCcccEEEecCCC----CeEEEec
Confidence 478999999999999999999999999999999999999999999995 67999999999999999874 7899999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHh
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEF 161 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l 161 (401)
|+|++++.++++++.||++||+|+|||++|||+|.+|++||+|+|||+|+|+|++|.+.++|+++ ++++|.++|+.+
T Consensus 93 t~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~L 172 (255)
T cd00779 93 THEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRL 172 (255)
T ss_pred CCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998889999999999999999999988899984 889999999988
Q ss_pred CcccEEe
Q 015762 162 LAVPVIK 168 (401)
Q Consensus 162 ~~ipv~~ 168 (401)
+ +|+..
T Consensus 173 g-l~~~~ 178 (255)
T cd00779 173 G-LPFVK 178 (255)
T ss_pred C-CcEEE
Confidence 6 89743
No 31
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-35 Score=301.94 Aligned_cols=275 Identities=15% Similarity=0.209 Sum_probs=221.7
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|++..+++|++||+|..+.+++.|++.+++.|+++||++|.||+|++.++|.+..|..+...++||.|+|.++ +.+
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~l 76 (423)
T PRK12420 1 MMEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGK----RDL 76 (423)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCC----cee
Confidence 6788999999999999999999999999999999999999999999999997555555567789999999875 899
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
+|||+.|++++++++... ...+|+|+||+|+|||+| +++.| |.|||+|.+++++|.+...||+|++.+..++++.
T Consensus 77 ~LRpD~T~~iaR~va~~~--~~~~p~r~~y~g~vfR~~-~~~~g--r~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~ 151 (423)
T PRK12420 77 ALRYDLTIPFAKVVAMNP--NIRLPFKRYEIGKVFRDG-PIKQG--RFREFIQCDVDIVGVESVMAEAELMSMAFELFRR 151 (423)
T ss_pred cccccccHHHHHHHHhCc--CCCCCeeEEEEcceECCC-CCCCC--ccceeEECCeeeECCCCCcccHHHHHHHHHHHHH
Confidence 999999999999988752 346899999999999999 67889 9999999999999999999999999999999998
Q ss_pred hCcccEE--e-------------cCCCCc--------ccc----------------------------------------
Q 015762 161 FLAVPVI--K-------------GKKSEL--------ENS---------------------------------------- 177 (401)
Q Consensus 161 l~~ipv~--~-------------g~k~~~--------e~f---------------------------------------- 177 (401)
++ +.+. . |...+. +++
T Consensus 152 lg-~~~~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~ 230 (423)
T PRK12420 152 LN-LEVTIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADF 230 (423)
T ss_pred CC-CCEEEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHH
Confidence 75 3320 0 000000 000
Q ss_pred ------------------------------------------c------h-----------------HHHHHHHHHcCC-
Q 015762 178 ------------------------------------------K------F-----------------VQIGVMVMVHGD- 191 (401)
Q Consensus 178 ------------------------------------------n------F-----------------Rli~~li~~~~d- 191 (401)
+ | |- -.|++.++.
T Consensus 231 ~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~Dl~~vr~l~YYtG~vFe~~~~~~~~~~~i~~GGRY-D~L~~~f~~~ 309 (423)
T PRK12420 231 KEAFNNPLVAEGVNELQQLQQYLIALGINENCIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRY-DNIIGAFRGD 309 (423)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCcccceeEEEEEecCCCccccccCCccH-HHHHHHhCCC
Confidence 0 1 11 012222210
Q ss_pred -----CCCCC---------C---CCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhh-CCCEEEEcCCCCCCHHHHH
Q 015762 192 -----DKGLM---------L---PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCE-AGIRANSDFRDNYSPGWKY 253 (401)
Q Consensus 192 -----d~Gl~---------l---P~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~-~Girv~iD~~~~~s~g~k~ 253 (401)
..|+. + ...-.|.||+|+|++. . ..+.+++++||+ +|++|++|.++ .++++++
T Consensus 310 ~~~~pAvGfa~~~~~l~~~l~~~~~~~~~~dvlI~~~~~-----~---~~a~~ia~~Lr~~~Gi~ve~~~~~-~~l~~~i 380 (423)
T PRK12420 310 DMNYPTVGISFGLDVIYTALSQKETISSTADVFIIPLGT-----E---LQCLQIAQQLRSTTGLKVELELAG-RKLKKAL 380 (423)
T ss_pred CCCCCceeEEEcHHHHHHHHHhcCCCCCCceEEEEEcCC-----H---HHHHHHHHHHHhhcCCeEEEecCC-cCHHHHH
Confidence 11110 0 0111578999999762 2 248899999999 99999999987 4999999
Q ss_pred HHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhH
Q 015762 254 SHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 295 (401)
Q Consensus 254 ~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el 295 (401)
++|.+.|+|+.++||++|+++|+|+|+++.++++..|+++++
T Consensus 381 ~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 381 NYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred HHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 999999999999999999999999999999999999998875
No 32
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=2.1e-35 Score=312.29 Aligned_cols=275 Identities=17% Similarity=0.176 Sum_probs=223.5
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEc
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LR 83 (401)
+..++||+||+|..+.+|++|++.+++.|+++||++|.||+||+.++|.+..|.- .++||.|.|+++ +.++||
T Consensus 327 ~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged---~k~mY~f~D~gG----r~LaLR 399 (763)
T PLN02972 327 PKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED---SKLIYDLADQGG----ELCSLR 399 (763)
T ss_pred cCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc---hhheEEEECCCC----CEEEeC
Confidence 4789999999999999999999999999999999999999999999997655532 368999999885 899999
Q ss_pred CCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecC-ChhhHHHHHHHHHHHHHHHhC
Q 015762 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~eil~~~~~i~~~l~ 162 (401)
|+.|++++++++.. ...|+|+||+|+|||+| +|++| |+|||+|++++++|. ++..+|+|++.+..++++.++
T Consensus 400 PDlTvPiAR~vA~n----~~~p~KrYyiG~VFR~e-~pqkG--R~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LG 472 (763)
T PLN02972 400 YDLTVPFARYVAMN----GITSFKRYQIAKVYRRD-NPSKG--RYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELD 472 (763)
T ss_pred CCChHHHHHHHHhC----CCCcceEEEeccEEecC-CCCCC--CCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCC
Confidence 99999999988763 23599999999999999 78999 999999999999997 555789999999999998875
Q ss_pred ccc---EEe-------------cC----------------CCCc-------------------------------c----
Q 015762 163 AVP---VIK-------------GK----------------KSEL-------------------------------E---- 175 (401)
Q Consensus 163 ~ip---v~~-------------g~----------------k~~~-------------------------------e---- 175 (401)
++ +.. |. +..+ .
T Consensus 473 -i~df~I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd 551 (763)
T PLN02972 473 -IGTYEVKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLS 551 (763)
T ss_pred -CCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 21 100 00 0000 0
Q ss_pred -------cc----------------------------------------------------------------------c
Q 015762 176 -------NS----------------------------------------------------------------------K 178 (401)
Q Consensus 176 -------~f----------------------------------------------------------------------n 178 (401)
.+ .
T Consensus 552 ~L~~~~~~l~~~~~~~~aL~eL~~L~~~L~~~gv~~~I~fDlsLvRGLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~~ 631 (763)
T PLN02972 552 KLRQEGSEFLGNASSRAALDELEIMFKALEKSKAIGKIVFDLSLARGLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVGM 631 (763)
T ss_pred HHHHhhHhhccChHHHHHHHHHHHHHHHHHhcCCCccEEECCcccCCCcccCceEEEEEEcCCccceeeecCCchhHHHh
Confidence 00 0
Q ss_pred h---------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcC
Q 015762 179 F---------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDF 243 (401)
Q Consensus 179 F---------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~ 243 (401)
| |++.+|... +......+ ...+.+|+|++++ +.....+.++++.||++||+++++.
T Consensus 632 FgG~~vPAVGFSiGIERL~~~L~~~-~~~~~~~~--~~~~~dVlV~s~g------~~~l~~alkia~~LR~aGI~aE~~~ 702 (763)
T PLN02972 632 FSGKQVPAVGVSLGIERVFAIMEQQ-EEEKSQVI--RPTETEVLVSIIG------DDKLALAAELVSELWNAGIKAEYKV 702 (763)
T ss_pred cCCCCCCEEEEEecHHHHHHHHHHc-ccCCCCCC--CCCCCcEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEEeC
Confidence 1 877665432 11000011 1244689999987 4577889999999999999999976
Q ss_pred CCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 244 RDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 244 ~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
. .++++++.+|++.|+|+.|+||++|+++|+|+||++.++++..++++++++.+++.|.
T Consensus 703 -~-~kl~kq~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 703 -S-TRKAKHLKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred -C-CCHHHHHHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 3 4899999999999999999999999999999999999999999999999988876653
No 33
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.9e-36 Score=292.67 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=139.5
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..++|+++|+|.|+.+++.|++++++.++++||++|.||+|++.++|.+ +||+++|.++||++++.| +.++|||
T Consensus 17 ~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~~~~-----~~l~LRP 90 (298)
T cd00771 17 EAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPFEEED-----EEYGLKP 90 (298)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEeccCC-----ceEEEcc
Confidence 4689999999999999999999999999999999999999999999975 899999999999997643 7899999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHH
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEE 160 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~ 160 (401)
|+|++++.++++++.||++||+|++|+|+|||+|.++ ++||+|+|||+|.|+|++ ++++++++| +++++.++|+.
T Consensus 91 ~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~e~~e~l~~~~~~l~~ 169 (298)
T cd00771 91 MNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKEEIKGVLDLIKEVYSD 169 (298)
T ss_pred cCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765 579999999999999997 455667655 99999999999
Q ss_pred hC
Q 015762 161 FL 162 (401)
Q Consensus 161 l~ 162 (401)
++
T Consensus 170 lg 171 (298)
T cd00771 170 FG 171 (298)
T ss_pred cC
Confidence 86
No 34
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-35 Score=293.42 Aligned_cols=292 Identities=21% Similarity=0.350 Sum_probs=234.8
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHH--cCCeEeccCCccChhhhhhhccCcccccccceEEEecCC--------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKK--MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE-------- 73 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~--~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~-------- 73 (401)
|+.++|++||.|.|..|.++|.+.|++.|-. -|+.+|+||++.|.++| +.|||+++|.+-|-..++.|.
T Consensus 26 YGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~-kASGHvd~FsDplv~c~~c~~~yRADHLi 104 (558)
T COG0423 26 YGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVW-KASGHVDKFSDPLVECKKCGERYRADHLI 104 (558)
T ss_pred ecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHh-hhcCcccccccceeeccccchhhhhhHHH
Confidence 5789999999999999999999999999943 68999999999999999 689999999985544332220
Q ss_pred --------------------------------CCC------------------CCcEEEcCCCChhHHHHHHHhHhcCC-
Q 015762 74 --------------------------------SDL------------------EVPIAIRPTSETVMYPYFSKWIRGHR- 102 (401)
Q Consensus 74 --------------------------------~~l------------------~~~l~LRPt~e~~i~~~~~~~i~s~~- 102 (401)
.+| +....|||+..++|.--|++-.++.|
T Consensus 105 Ee~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~ 184 (558)
T COG0423 105 EEYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARN 184 (558)
T ss_pred HHHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhcc
Confidence 011 24789999999999999999887655
Q ss_pred CCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhh-------------------H--HH--------H----
Q 015762 103 DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE-------------------A--DD--------E---- 149 (401)
Q Consensus 103 ~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~-------------------a--~~--------e---- 149 (401)
.||+-+.|+|+.||+|.+|..|++|+|||+|.|++.| +++++ . .+ +
T Consensus 185 klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~F-v~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~ 263 (558)
T COG0423 185 KLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFF-VDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVE 263 (558)
T ss_pred CCCeEEEeechhhccccCcccceeehhhhhhhheeeE-ECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceee
Confidence 7999999999999999999999999999999999984 44433 1 11 1
Q ss_pred ------HHHHHHHHHHHhCcccE----------------------------------EecCC--C---------------
Q 015762 150 ------ILELYRRIYEEFLAVPV----------------------------------IKGKK--S--------------- 172 (401)
Q Consensus 150 ------il~~~~~i~~~l~~ipv----------------------------------~~g~k--~--------------- 172 (401)
.+.....++.++| |+- +.|.. +
T Consensus 264 n~~~~y~~~~~~~fl~~lG-I~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l 342 (558)
T COG0423 264 NETLAYFIARTKFFLEDLG-IDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDL 342 (558)
T ss_pred chhHHHHHHHHHHHHHHcC-CCHHHhhhhhcChHHHhhhhhcceeEEEecCCCceEEEEEeecccccchhhhhhhccccc
Confidence 2233345555664 430 00100 0
Q ss_pred --------------------------Cc-----------------------------------------ccc-------c
Q 015762 173 --------------------------EL-----------------------------------------ENS-------K 178 (401)
Q Consensus 173 --------------------------~~-----------------------------------------e~f-------n 178 (401)
+. ++| .
T Consensus 343 ~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEPS 422 (558)
T COG0423 343 TVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEPS 422 (558)
T ss_pred eeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhhhhhhhhhhccCccccccchhheeeeeeccCceecCceeccC
Confidence 00 011 1
Q ss_pred h---HHHHHHHHHcCCCC-C------CCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCC
Q 015762 179 F---VQIGVMVMVHGDDK-G------LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYS 248 (401)
Q Consensus 179 F---Rli~~li~~~~dd~-G------l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s 248 (401)
| |++.++++...+.. + |.|||++||++|+|+|+..+ +++.+.|.+|.+.|++.|+.|.+|++. |
T Consensus 423 fGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k----~~l~~~a~~i~~~L~~~~~~v~yDdsG--s 496 (558)
T COG0423 423 FGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKK----DELVEIAKEIFEKLRELGFNVDYDDSG--S 496 (558)
T ss_pred CCchHHHHHHHHHhhcccccccceeEEecCcccCceEEEEEeeecc----cchhHHHHHHHHHHHhcCceEEecCCC--c
Confidence 2 99988877544322 1 68999999999999999865 458899999999999999999999985 8
Q ss_pred HHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 249 PGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 249 ~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
+|++++.++..|+||.|.|..+.++.++||||+|||.+|..|++++|+..+.+++.
T Consensus 497 IGrRYrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 497 IGRRYRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIK 552 (558)
T ss_pred HhhhhhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988765
No 35
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=6.5e-34 Score=288.32 Aligned_cols=259 Identities=18% Similarity=0.192 Sum_probs=216.1
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhcc-CcccccccceEEEecCCCCCCCcEEEc
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKD-HIEGFAPEVAWVTKSGESDLEVPIAIR 83 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~g-h~~~f~~e~y~~~~~g~~~l~~~l~LR 83 (401)
.+++|+.||+|.++.+++.|++.+++.|.++||++|.||+|++.++|.+..| +.+.+.++||+|.|.++ +.++||
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g----~~l~LR 76 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGG----RSLTLR 76 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCC----CEEeec
Confidence 3689999999999999999999999999999999999999999999977654 34447789999999764 899999
Q ss_pred CCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhCc
Q 015762 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLA 163 (401)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~~ 163 (401)
|+.|++++++++.... ++++|+|+||+|+|||+| +++.| |.|||+|.++|++|.+...+|+|++.++.++++.++
T Consensus 77 pD~T~~iaR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg- 151 (397)
T TIGR00442 77 PEGTAPVARAVIENKL-LLPKPFKLYYIGPMFRYE-RPQKG--RYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELG- 151 (397)
T ss_pred CCCcHHHHHHHHhccc-ccCCCeEEEEEcCeecCC-CCCCC--cccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 9999999998876543 468999999999999999 56778 999999999999999999999999999999998886
Q ss_pred cc-E--Eec--------------------C-CC--Cc------------------cc---c-------------------
Q 015762 164 VP-V--IKG--------------------K-KS--EL------------------EN---S------------------- 177 (401)
Q Consensus 164 ip-v--~~g--------------------~-k~--~~------------------e~---f------------------- 177 (401)
++ + ..| . ++ .. +. |
T Consensus 152 ~~~~~i~i~~~~i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 231 (397)
T TIGR00442 152 IKDFTLEINSLGILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHF 231 (397)
T ss_pred CCceEEEecCcccHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHH
Confidence 33 1 000 0 00 00 00 0
Q ss_pred --------------------------------------------------------ch---------------HHHHHHH
Q 015762 178 --------------------------------------------------------KF---------------VQIGVMV 186 (401)
Q Consensus 178 --------------------------------------------------------nF---------------Rli~~li 186 (401)
+| |++.+|.
T Consensus 232 ~~l~~~l~~~~~~i~~dl~~~r~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~avGfs~~~~~l~~~l~ 311 (397)
T TIGR00442 232 EELKELLDALGIPYKIDPSLVRGLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPAVGFAIGIERLLLLLE 311 (397)
T ss_pred HHHHHHHHHcCCCEEECCccccCchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCceEEeeecHHHHHHHHH
Confidence 01 6666654
Q ss_pred HHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEE
Q 015762 187 MVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIE 266 (401)
Q Consensus 187 ~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~ii 266 (401)
+. ...|++.+|.+|+|++++ ++...++.++++.||++|++|+++... .++++++++|++.|+|++|+
T Consensus 312 ~~------~~~~~~~~~~~vlV~~~~------~~~~~~~~~i~~~Lr~~gi~v~~~~~~-~~l~k~~~~a~~~g~~~~i~ 378 (397)
T TIGR00442 312 EL------GLEPPEESSPDVYVVPLG------EEAELEALKLAQKLRKAGIRVEVDLGG-RKLKKQLKYADKLGARFAVI 378 (397)
T ss_pred hc------CCCCCCCCCCcEEEEEeC------HHHHHHHHHHHHHHHhCCCeEEEeCCC-CCHHHHHHHHHHcCCCEEEE
Confidence 42 134555678899999987 567788999999999999999999876 58999999999999999999
Q ss_pred eCccccCCCeEEEEECCCC
Q 015762 267 IGPKDLANDQVRAVRRDNG 285 (401)
Q Consensus 267 iG~kE~~~~~V~v~~r~tg 285 (401)
||++|+++++|+||++.||
T Consensus 379 ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 379 LGEDELANGTVTLKDLETG 397 (397)
T ss_pred EChhHHhCCeEEEEeCCCC
Confidence 9999999999999999875
No 36
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-35 Score=283.21 Aligned_cols=279 Identities=18% Similarity=0.196 Sum_probs=227.8
Q ss_pred cccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEE
Q 015762 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (401)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~L 82 (401)
...+++|++||-|..+.++++|.+.+.+.|++||++.|+||+||-.++|..+.|.- .+-+|.++|+|+ +-++|
T Consensus 59 ~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEd---skLiYdlkDQGG----El~SL 131 (518)
T KOG1936|consen 59 SLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGED---SKLIYDLKDQGG----ELCSL 131 (518)
T ss_pred eecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccc---cceeEehhhcCC----cEEEe
Confidence 35689999999999999999999999999999999999999999999998877742 378999999996 99999
Q ss_pred cCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC--CCCcccchhheeccceeec-CChhhHHHHHHHHHHHHHH
Q 015762 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAF-ATKSEADDEILELYRRIYE 159 (401)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~--~~gllR~REF~q~e~~~~~-~~~~~a~~eil~~~~~i~~ 159 (401)
||+.|++++++++.+ +---+++||++.|||++ .| ++| |+|||+|+|++++| .++--+|+|++.+..++++
T Consensus 132 RYDLTVPfARylAmN----ki~sikRy~iAkVyRRd-~P~mtrG--R~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~ 204 (518)
T KOG1936|consen 132 RYDLTVPFARYLAMN----KITSIKRYHIAKVYRRD-QPAMTRG--RYREFYQCDFDIAGQFDPMIPDAECLKIVVEILS 204 (518)
T ss_pred ecccccHHHHHHHHc----ccccceeeeEEEEEecc-Cchhhch--hhhhhhccCccccccCCCCCchHHHHHHHHHHHh
Confidence 999999977776644 33468999999999999 67 789 99999999999999 6788899999999999999
Q ss_pred HhCccc-----E-----------Eec----------------CCCCcccc------------------------------
Q 015762 160 EFLAVP-----V-----------IKG----------------KKSELENS------------------------------ 177 (401)
Q Consensus 160 ~l~~ip-----v-----------~~g----------------~k~~~e~f------------------------------ 177 (401)
.++ |- + +-| .|..||..
T Consensus 205 ~l~-Igd~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL 283 (518)
T KOG1936|consen 205 RLG-IGDYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDEL 283 (518)
T ss_pred hcC-ccceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHH
Confidence 875 21 1 001 11112110
Q ss_pred --------------------------------------------------------------------------------
Q 015762 178 -------------------------------------------------------------------------------- 177 (401)
Q Consensus 178 -------------------------------------------------------------------------------- 177 (401)
T Consensus 284 ~e~l~~d~~l~~n~~a~eal~dlk~Lf~y~~~fg~s~~isfDlSLARGLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e 363 (518)
T KOG1936|consen 284 LEKLIADPKLSQNEAAKEALADLKQLFEYLEIFGISERISFDLSLARGLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTE 363 (518)
T ss_pred HHHHhcCCcccccHHHHHHHHHHHHHHHHHHHcCCcceEEeehHHhccchhhhceeeeeeeccccccCcchhhhcccccc
Confidence
Q ss_pred ------------------ch-----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHH
Q 015762 178 ------------------KF-----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIF 222 (401)
Q Consensus 178 ------------------nF-----------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~ 222 (401)
.| |++..|-+.. +..|..+- -..+||+|...++ ..+
T Consensus 364 ~~~vGSvaaGGRYDnLv~mf~~k~~~vPcvG~S~GVeRiFsile~r~-~~~~~~iR--~t~t~V~V~~~~k------~~l 434 (518)
T KOG1936|consen 364 PGGVGSVAAGGRYDNLVGMFDKKGDKVPCVGQSVGVERIFSILEQRA-ATVATKIR--TTETQVYVAAAGK------NLL 434 (518)
T ss_pred CCCccccccCcchhhHHHHhccccCcCCccceeehHhHHHHHHHHHH-Hhhhhccc--cCceEEEEEecCC------chH
Confidence 01 7666554332 22222222 2446888877663 357
Q ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015762 223 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 302 (401)
Q Consensus 223 ~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~ 302 (401)
....++.+.|+.+||..++-+..+.++-.||+++++.|||++++||++|++.|.|.|++..+++.+.++.++++..++++
T Consensus 435 ~eR~k~v~~Lw~agI~aE~~yk~~~~~~~q~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~~v~~l~~~ 514 (518)
T KOG1936|consen 435 FERLKVVNALWDAGIKAEYLYKANPKLLKQFQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQFVSELKDL 514 (518)
T ss_pred HHHHHHHHHHHhcCcchhhhhhcCccHHHHHHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHHHHHHHHHH
Confidence 77889999999999999988776678999999999999999999999999999999999999999999999999999888
Q ss_pred HHH
Q 015762 303 LEE 305 (401)
Q Consensus 303 l~~ 305 (401)
+.+
T Consensus 515 l~~ 517 (518)
T KOG1936|consen 515 LSQ 517 (518)
T ss_pred hcC
Confidence 753
No 37
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=1.1e-34 Score=282.88 Aligned_cols=189 Identities=16% Similarity=0.183 Sum_probs=163.5
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
..+|++.|+|.|+.++++|++++++.+.+.||++|.||.|++.++|+ ++||+++|.++||++++ ++++|+||
T Consensus 40 ~G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~-~sg~~~~~~~~~f~v~~-------~~~~L~pt 111 (297)
T cd00770 40 SGSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVME-GTGQLPKFDEQLYKVEG-------EDLYLIAT 111 (297)
T ss_pred CCCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHh-hcCcCccChhcccEecC-------CCEEEeec
Confidence 35669999999999999999999999999999999999999999996 69999999999999964 57999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCC----CCcccchhheeccceeecCChhhHHHH---HHHHHHHHH
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNP----TPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIY 158 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~----~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~ 158 (401)
+|++++.++++++.||++||+|++|+|+|||+|.+|. +||+|+|||+|.|+|+ ++++++++++ ++++|.++|
T Consensus 112 ~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l~~~~~i~ 190 (297)
T cd00770 112 AEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELISNAEEIL 190 (297)
T ss_pred CCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998753 7999999999999998 6666888777 999999999
Q ss_pred HHhCcccEEecCCCCc-------ccc-----------------------------------------ch-----------
Q 015762 159 EEFLAVPVIKGKKSEL-------ENS-----------------------------------------KF----------- 179 (401)
Q Consensus 159 ~~l~~ipv~~g~k~~~-------e~f-----------------------------------------nF----------- 179 (401)
+.|+ +|+.....+.+ .+| .|
T Consensus 191 ~~lg-l~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~ 269 (297)
T cd00770 191 QELG-LPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDFQARRLNIRYRDKKDGKKQYVHTLNGTALAT 269 (297)
T ss_pred HHcC-CcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccCccChhhhhcCcEEecCCCCCeeeeeEecccchHH
Confidence 9885 88633222111 111 01
Q ss_pred -HHHHHHHHHcCCCCCCCCCCC-CCCc
Q 015762 180 -VQIGVMVMVHGDDKGLMLPPK-VASV 204 (401)
Q Consensus 180 -Rli~~li~~~~dd~Gl~lP~~-iap~ 204 (401)
|+|++|+++|+|++|+++||. ++|+
T Consensus 270 ~R~l~alle~~~~~~g~v~~P~~l~py 296 (297)
T cd00770 270 PRTIVAILENYQTEDGSVVIPEVLRPY 296 (297)
T ss_pred HHHHHHHHHhCcCCCCcEeCchhhccc
Confidence 999999999999999998864 5554
No 38
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=4.4e-33 Score=282.72 Aligned_cols=189 Identities=17% Similarity=0.219 Sum_probs=165.2
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
+.+|++.|+|.|++++++|++++.+.+.+.||++|.||.|.+.++|. ++||+++|.++||++++ ++++|+||
T Consensus 161 ~G~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~-~~G~~~~f~~~~y~i~~-------~~~~L~pT 232 (418)
T TIGR00414 161 TGSRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLD-GTGQLPKFEEDIFKLED-------TDLYLIPT 232 (418)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHh-hcCccccccccceEecC-------CCEEEEeC
Confidence 45679999999999999999999999999999999999999999995 79999999999999963 56999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHH
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIY 158 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~ 158 (401)
+|++++.++++++.||++||+|++|+++|||+|.. .++||+|+|||+|.|+|+ +++++++.++ ++++|.++|
T Consensus 233 sE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~~~~~~~i~ 311 (418)
T TIGR00414 233 AEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVK-FCKPEESAEELEEMTSDAEQIL 311 (418)
T ss_pred CcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEE-EcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999974 267999999999999988 7788888877 999999999
Q ss_pred HHhCcccEEecCCCCc-------ccc-------------------c----------------------h-----------
Q 015762 159 EEFLAVPVIKGKKSEL-------ENS-------------------K----------------------F----------- 179 (401)
Q Consensus 159 ~~l~~ipv~~g~k~~~-------e~f-------------------n----------------------F----------- 179 (401)
+.|+ +|+.....+.+ .+| | |
T Consensus 312 ~~Lg-lp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn~~d~qsrr~~i~y~~~~~~~~~~vh~ln~~~~ai 390 (418)
T TIGR00414 312 QELE-LPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAI 390 (418)
T ss_pred HHcC-CceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcCcchHhHHhCCcEEECCCCCceEEEEeecCcchHH
Confidence 9875 89743211111 111 0 1
Q ss_pred -HHHHHHHHHcCCCCCCC-CCCCCCCc
Q 015762 180 -VQIGVMVMVHGDDKGLM-LPPKVASV 204 (401)
Q Consensus 180 -Rli~~li~~~~dd~Gl~-lP~~iap~ 204 (401)
|+|++|+++|+|++|.+ ||..++|+
T Consensus 391 ~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 391 GRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred HHHHHHHHHHccCCCCCEeCChhcccc
Confidence 99999999999999966 99999886
No 39
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.6e-33 Score=283.91 Aligned_cols=190 Identities=14% Similarity=0.163 Sum_probs=166.3
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHH-HcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..+|++.|+|.|..+++.|++++.+.+. +.||++|.||.|.+.++|. ++||+++|.++||++++ ++++|+|
T Consensus 158 ~G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~-~~G~~~~f~~~ly~i~~-------~~~~L~p 229 (425)
T PRK05431 158 SGSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMY-GTGQLPKFEEDLYKIED-------DDLYLIP 229 (425)
T ss_pred CCceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHh-hcCccccchhhceEecC-------CCEEEEe
Confidence 3567999999999999999999988887 9999999999999999996 68999999999999962 5799999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
|+|++++.+|++++.||++||+|++|+++|||+|.. +++||+|+|||+|.|+|+ ++++++++++ ++++|.+|
T Consensus 230 TsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~-f~~~e~s~~~~~~~l~~~~~i 308 (425)
T PRK05431 230 TAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVK-FTKPEDSYAELEELTANAEEI 308 (425)
T ss_pred CCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEE-EECHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984 468999999999999997 7777888877 99999999
Q ss_pred HHHhCcccEEecCCCCc-------ccc-----------------------------------------ch----------
Q 015762 158 YEEFLAVPVIKGKKSEL-------ENS-----------------------------------------KF---------- 179 (401)
Q Consensus 158 ~~~l~~ipv~~g~k~~~-------e~f-----------------------------------------nF---------- 179 (401)
|+.|+ +|+.....+.. .+| .|
T Consensus 309 ~~~Lg-lpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc~d~qsrr~~i~~~~~~~~~~~~~htln~t~~a 387 (425)
T PRK05431 309 LQKLE-LPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDFQARRANIRYRDEGDGKPELVHTLNGSGLA 387 (425)
T ss_pred HHHcC-CcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCccchhhhhcCcEEecCCCCceeEEEEeCCchhh
Confidence 99885 88743221111 111 01
Q ss_pred --HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015762 180 --VQIGVMVMVHGDDKG-LMLPPKVASVQ 205 (401)
Q Consensus 180 --Rli~~li~~~~dd~G-l~lP~~iap~q 205 (401)
|+|++|+|+|+|++| ++||+.++|+.
T Consensus 388 ~~R~l~ailE~~q~~~g~i~iP~~l~py~ 416 (425)
T PRK05431 388 VGRTLVAILENYQQADGSVTIPEVLRPYM 416 (425)
T ss_pred HHHHHHHHHHHCCCCCCcEECChhhhccc
Confidence 999999999999999 99999999974
No 40
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=1.6e-32 Score=277.77 Aligned_cols=163 Identities=21% Similarity=0.372 Sum_probs=145.5
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHH-HHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCC------
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFD-AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE------ 73 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~-~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~------ 73 (401)
|+++.+++|+++|.|+|++||+.|++++. ..++++||+++++|.|+|.+.|.+ .||+++|.++||++++.++
T Consensus 206 lidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k-~ghl~gF~~e~y~Vt~~~~d~d~~~ 284 (520)
T TIGR00415 206 WVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNK-MRYLEGLPEGMYYCCAPKRDPELFE 284 (520)
T ss_pred CeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcc-cCCCCCCchhheEEecCCCCcchhh
Confidence 46788999999999999999999999995 677889999999999999999975 5999999999999986432
Q ss_pred --------------CCC----CC-cEEEcCCCChhHHHHHHHhHhcCCCCCeEEEe-eecceecCCCCCCCcccchhhee
Q 015762 74 --------------SDL----EV-PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (401)
Q Consensus 74 --------------~~l----~~-~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (401)
++| ++ +++|+||+|++++.++++|+.++++||++++| |++|||||..+++||+|++||+|
T Consensus 285 ~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~k 364 (520)
T TIGR00415 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLR 364 (520)
T ss_pred ccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEE
Confidence 112 33 89999999999999999999999999999999 77999999877899999999999
Q ss_pred ccceeecCChhhHHHH---HHHHHHHHHHHhCcccE
Q 015762 134 QEGHTAFATKSEADDE---ILELYRRIYEEFLAVPV 166 (401)
Q Consensus 134 ~e~~~~~~~~~~a~~e---il~~~~~i~~~l~~ipv 166 (401)
+|+|+ ++++++|.++ +++.|..+++.| ++|+
T Consensus 365 vE~v~-~~tpEea~e~~e~mle~~~~~l~~L-~Lpy 398 (520)
T TIGR00415 365 VECVW-IAEPEETEEIRDKTLELAEDAADEL-DLEW 398 (520)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHHHHHHHc-CCCe
Confidence 99999 8899998777 999999999776 4853
No 41
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.97 E-value=2.2e-30 Score=265.72 Aligned_cols=162 Identities=18% Similarity=0.315 Sum_probs=142.3
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHH-HHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCC------
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAE-IKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE------ 73 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~-~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~------ 73 (401)
|+|..+++|++.|+|.|+.+++.|++++++. .+++||+++.||.|++.++|. .+||+++|.++||++++.++
T Consensus 206 lldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~-ksGhl~~F~e~my~V~~~~~d~e~~~ 284 (517)
T PRK00960 206 WVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMY-KMRYLEGLPEGMYYVCPPKRDPEYFE 284 (517)
T ss_pred CccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHh-hcCCccCChhhceEeecccccccccc
Confidence 4677899999999999999999999999875 688899999999999999996 57999999999999974221
Q ss_pred ------------------CCC-CCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEe-eecceecCCCCCCCcccchhhee
Q 015762 74 ------------------SDL-EVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (401)
Q Consensus 74 ------------------~~l-~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (401)
+.| ++.++|||++|++++.+|++++.|+++||+|+++ +|+|||||....+||+|+|||+|
T Consensus 285 ~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~k 364 (517)
T PRK00960 285 EFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHR 364 (517)
T ss_pred chhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEE
Confidence 011 3568999999999999999999999999999999 78999999655789999999999
Q ss_pred ccceeecCChhhHHHH---HHHHHHHHHHHhCccc
Q 015762 134 QEGHTAFATKSEADDE---ILELYRRIYEEFLAVP 165 (401)
Q Consensus 134 ~e~~~~~~~~~~a~~e---il~~~~~i~~~l~~ip 165 (401)
.|+|+ +++++++.++ +++....+++.|+ +|
T Consensus 365 vE~h~-f~tpEqs~ee~e~ll~~~e~i~~~Lg-Lp 397 (517)
T PRK00960 365 IEIVW-LGTPEQVEEIRDELLKYAHILAEKLD-LE 397 (517)
T ss_pred EEEEE-EeCHHHHHHHHHHHHHHHHHHHHHcC-CC
Confidence 99996 8899999888 7777777788775 88
No 42
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-29 Score=247.99 Aligned_cols=294 Identities=20% Similarity=0.285 Sum_probs=225.6
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHH-HcCCeEeccCCccChhhhhhhccCcccccccceEEEecC----------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG---------- 72 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g---------- 72 (401)
|+.++|.|||.|.|.++..+|.+.||+.|. +-+.-+|+.|+|.|..+| |.|||++.|.+=|-.=...|
T Consensus 32 YgGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~Vl-kaSGHVdkF~D~mvkD~ktGecfRADHLvk 110 (599)
T KOG2298|consen 32 YGGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVL-KASGHVDKFADWMVKDEKTGECFRADHLVK 110 (599)
T ss_pred hcCcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHh-hcccchhhhhHHHhcCccccceehhhHHHH
Confidence 678999999999999999999999999994 678999999999999999 78999999987443100000
Q ss_pred -----------------------------------------------CCCC------------------CCcEEEcCCCC
Q 015762 73 -----------------------------------------------ESDL------------------EVPIAIRPTSE 87 (401)
Q Consensus 73 -----------------------------------------------~~~l------------------~~~l~LRPt~e 87 (401)
+.+| +-.-.|||+..
T Consensus 111 ~~~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETA 190 (599)
T KOG2298|consen 111 DAEERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETA 190 (599)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCcccc
Confidence 0111 12568999999
Q ss_pred hhHHHHHHHhHh-cCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhh---------HHHHHH------
Q 015762 88 TVMYPYFSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE---------ADDEIL------ 151 (401)
Q Consensus 88 ~~i~~~~~~~i~-s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~---------a~~eil------ 151 (401)
.++..-|++... +.+.||+--.|+|+.||+|.+|..||+|+|||+|.|+|- +.++.+ ++.++.
T Consensus 191 QG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEH-FvdP~~K~h~kF~~V~~~~l~l~~~~~ 269 (599)
T KOG2298|consen 191 QGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEH-FVDPLLKSHPKFSLVAAEKLRLFPRDK 269 (599)
T ss_pred ccccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhc-cCCCCCCCChhhhhhhhhhhhhcchhh
Confidence 999888888764 446899999999999999999988999999999999976 333221 111100
Q ss_pred -------------HHH--------------HH---HHHHhCccc-----E----------------------------Ee
Q 015762 152 -------------ELY--------------RR---IYEEFLAVP-----V----------------------------IK 168 (401)
Q Consensus 152 -------------~~~--------------~~---i~~~l~~ip-----v----------------------------~~ 168 (401)
+.. .+ ++..+| |. + ..
T Consensus 270 q~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lG-id~~rlRFRqH~~nEMAHYA~DCWDaEi~tSYGWIEcV 348 (599)
T KOG2298|consen 270 QLSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLG-IDKERLRFRQHMANEMAHYAFDCWDAEIKTSYGWIECV 348 (599)
T ss_pred hhccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhC-cchhhcchHHHhhhhhhhhhccccchhhhhccCcEEEe
Confidence 000 00 111111 10 0 00
Q ss_pred cCCCC------------------ccc----------------------c-------------------------------
Q 015762 169 GKKSE------------------LEN----------------------S------------------------------- 177 (401)
Q Consensus 169 g~k~~------------------~e~----------------------f------------------------------- 177 (401)
|..++ +++ |
T Consensus 349 G~ADRs~yDL~~Hs~~t~~~Lv~~~kl~ePkeve~~~i~~~kk~~g~~fk~~ak~v~~~l~~~s~~e~~~~~~~L~~~g~ 428 (599)
T KOG2298|consen 349 GCADRAAYDLSTHSRASKVWLVAELRLREPKEVEFAVIPPNKKELGCAFKKDAKGVNETLIFPSGKELIETLENLGDHGL 428 (599)
T ss_pred eccchhheeeecCccccCCceeehhhcCCcceEEEEEeccchhhcchhhhhcccchhHHhhcCCHHHHHHHHHHhhcCCc
Confidence 11000 000 0
Q ss_pred ----------------------------------ch---HHHHHHHHHcC----CCC-C-CCCCCCCCCceEEEEEcCCC
Q 015762 178 ----------------------------------KF---VQIGVMVMVHG----DDK-G-LMLPPKVASVQVIVIPVPYK 214 (401)
Q Consensus 178 ----------------------------------nF---Rli~~li~~~~----dd~-G-l~lP~~iap~qV~Iipi~~~ 214 (401)
.| |++.+|+++.- |+. + +.+||.+||+++.|.|+..+
T Consensus 429 ~~~~v~~l~k~~v~i~~~~k~~hV~e~~P~VIEPSfGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n 508 (599)
T KOG2298|consen 429 LHMYVVNLSKLHVRIKRKTKVPHVREVNPDVIEPSFGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPN 508 (599)
T ss_pred EEEEEEecccceeeeeeeeeeeeEEeecCCcccccchhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCc
Confidence 01 99999988532 222 2 57899999999999998864
Q ss_pred CCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhh
Q 015762 215 DADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGS 294 (401)
Q Consensus 215 ~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~e 294 (401)
.+..+.+..|.+.|++.||.+.+|+++ .|+|+++..-+..|+|+-|.|....+++++||+|.||+..|..+++++
T Consensus 509 ----~ef~pv~~~ls~~L~~~gis~kvdds~-~SIGrrYAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e 583 (599)
T KOG2298|consen 509 ----LEFRPVCQGLSNELTENGISVKVDDSS-SSIGRRYARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISK 583 (599)
T ss_pred ----hhHHHHHHHHHHHHHhCCCeEEecCCC-CcHhhhhhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHH
Confidence 578999999999999999999999998 599999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015762 295 LVERVKELLEE 305 (401)
Q Consensus 295 l~~~i~~~l~~ 305 (401)
+...|.+++..
T Consensus 584 ~~s~v~~~~~g 594 (599)
T KOG2298|consen 584 LKSFLIKYISG 594 (599)
T ss_pred HHHHHHHHhcc
Confidence 99988877653
No 43
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.96 E-value=2.8e-29 Score=226.29 Aligned_cols=141 Identities=31% Similarity=0.507 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHH-HcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhH
Q 015762 20 IWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 20 i~~~i~~~~~~~~~-~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (401)
|+++|++++++.+. +.||++|.||+|++.++|. .+||++.|.++||++++.++ ++++||||+|++++.++++++
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~-~sg~~~~~~~~~~~~~~~~~----~~~~L~pt~~~~~~~~~~~~~ 75 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWE-KSGHWDNFSDEMFKVKDRGD----EEYCLRPTSEPGIYSLFKNEI 75 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHH-HHSHHHHHGGGSEEEEETTT----EEEEE-SSSHHHHHHHHHHHE
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhh-hccccccccCCeeeeeeccc----ccEEeccccccceeeeeccee
Confidence 68999999999999 9999999999999999997 49999999999999999874 789999999999999999999
Q ss_pred hc-CCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHhCcc-cEE
Q 015762 99 RG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFLAV-PVI 167 (401)
Q Consensus 99 ~s-~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l~~i-pv~ 167 (401)
.+ +++||++++|+|+|||+|.++++|++|+|||+|.|+|+++.+ +++..+ +++++.++|+.++ + |+.
T Consensus 76 ~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~~~i~~~lg-l~~~~ 147 (173)
T PF00587_consen 76 RSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELYKEILEKLG-LEPYR 147 (173)
T ss_dssp EBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHTT-SGCEE
T ss_pred eeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHHHHHHHHcC-CceEE
Confidence 99 999999999999999999988999999999999999998877 655544 9999999999886 8 874
No 44
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.95 E-value=9e-28 Score=225.98 Aligned_cols=153 Identities=25% Similarity=0.387 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
|+.++++|++++++.+.++||++|.||+|++.++|. .++|++.|.++||++++.++...++.++||||.|+++++++++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~ 79 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFF-KGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHh-hcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhc
Confidence 578999999999999999999999999999999996 5789999999999999886322237899999999999999999
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCC--hhhHHHHHHHHHHHHHHHhCcccEEecCC
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT--KSEADDEILELYRRIYEEFLAVPVIKGKK 171 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~--~~~a~~eil~~~~~i~~~l~~ipv~~g~k 171 (401)
++.+|++||+|++|+|+|||+|.++..|+.|+|||+|.|+|++|.+ ..++++|+++++.++++.++ +|+.....
T Consensus 80 ~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lg-l~~~i~~~ 155 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELG-LPVRVVVA 155 (235)
T ss_pred cCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEEc
Confidence 9999999999999999999999765558889999999999998887 55667779999999999985 78754443
No 45
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.95 E-value=2.4e-26 Score=232.56 Aligned_cols=149 Identities=17% Similarity=0.111 Sum_probs=135.8
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEec-CCCCCCCcEEE
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAI 82 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~-g~~~l~~~l~L 82 (401)
...++|+.|++|..+..++.|++.+++.|+++||++|.||+|++.++|.+.+|+ ...++||.|.|+ ++ +.++|
T Consensus 3 ~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~--~~~~~~~~f~d~~~g----~~l~L 76 (391)
T PRK12292 3 WQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGA--ILDLRTFKLVDQLSG----RTLGL 76 (391)
T ss_pred CCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCc--cchhhhEEEeecCCC----CEEEE
Confidence 467999999999999999999999999999999999999999999999776664 356889999998 64 89999
Q ss_pred cCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
||+.|++++++++.... ....|+|+|++|+|||+| +|+.| |+|||+|.+++++|.+...||+|++.+..++++.++
T Consensus 77 RpD~T~~iaR~~a~~~~-~~~~p~r~~y~g~vfR~~-~~~~g--r~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lg 152 (391)
T PRK12292 77 RPDMTAQIARIAATRLA-NRPGPLRLCYAGNVFRAQ-ERGLG--RSREFLQSGVELIGDAGLEADAEVILLLLEALKALG 152 (391)
T ss_pred CCCCcHHHHHHHHHhcc-CCCCCeEEEeeceeeecC-CCcCC--CccchhccceEEeCCCCchHHHHHHHHHHHHHHHcC
Confidence 99999999999887553 346899999999999999 77899 999999999999999999999999999999999885
No 46
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.93 E-value=2.7e-25 Score=190.52 Aligned_cols=116 Identities=18% Similarity=0.185 Sum_probs=107.2
Q ss_pred HHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCC--CCHHHHHHHHHHhCCCE
Q 015762 186 VMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDN--YSPGWKYSHWEMKGVPL 263 (401)
Q Consensus 186 i~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~--~s~g~k~~~ae~~GvP~ 263 (401)
++++.|++|++|||.+||+||+|+|+..++ +++.++|.+|++.|+++|++|.+|++++ .++|+||++|+++|+|+
T Consensus 10 iE~~~d~~Gl~~P~~iAP~qV~Iipi~~~~---~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~~dliGiP~ 86 (128)
T cd02426 10 RKKGRQRQVLKLHPCLAPYKVAIDCGKGDT---AELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDKYDEMGVLF 86 (128)
T ss_pred hhcCCCCcEEECCCCCCCeEEEEEeccCCh---HHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHhhhhcCCCE
Confidence 588889999999999999999999995332 6799999999999999999999999874 48999999999999999
Q ss_pred EEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 264 RIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 264 ~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
+|+||++++++|+|++++|+|+++..++++++.+.+.+++.
T Consensus 87 ~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 87 TLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred EEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887754
No 47
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.92 E-value=2.5e-25 Score=212.52 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=124.1
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcC--CeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEE
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMK--IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G--~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~ 81 (401)
|.+++|++||+|.|+.++++|++++++.+.++| |++|.||++++.++|..+.|+++ .+ ++.++
T Consensus 18 y~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d-----------~~----~~~~~ 82 (254)
T cd00774 18 YGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE-----------SG----GNLGY 82 (254)
T ss_pred ccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC-----------CC----Ccccc
Confidence 456899999999999999999999999999996 99999999999988865445442 22 26899
Q ss_pred EcCCCChhHHHHHHHhHhcCC-CCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 82 IRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~-~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
|||+.|+.+...|++...+++ +||++++|+|+|||+|.+|+.|++|+|||+|.|+|+++ +++++.++ +++.+.++
T Consensus 83 Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~-~~~~~~e~~~~v~~~~~~~ 161 (254)
T cd00774 83 LRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFV-DPEKSHPWFDYWADQRLKW 161 (254)
T ss_pred cCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeE-CCCCchHHHHHHHHHHHHH
Confidence 999999999888888887765 99999999999999998877799999999999999966 55566665 88899999
Q ss_pred HHHhC
Q 015762 158 YEEFL 162 (401)
Q Consensus 158 ~~~l~ 162 (401)
|..++
T Consensus 162 l~~~G 166 (254)
T cd00774 162 LPKFA 166 (254)
T ss_pred HHHcC
Confidence 99876
No 48
>PLN02678 seryl-tRNA synthetase
Probab=99.92 E-value=1.6e-24 Score=220.04 Aligned_cols=190 Identities=15% Similarity=0.214 Sum_probs=159.8
Q ss_pred CccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCC
Q 015762 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSE 87 (401)
Q Consensus 8 ~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e 87 (401)
.+++.|.+.|..+.+.|.+++.+.+.+.||++|.+|.|.+.++|. .+||++.|.++||.+.+.| ++++|.||+|
T Consensus 164 ~~~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~-~sG~~~~f~e~my~i~~~~-----~~~yLi~TaE 237 (448)
T PLN02678 164 GRGYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMA-KCAQLAQFDEELYKVTGEG-----DDKYLIATSE 237 (448)
T ss_pred ceeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHh-hcCCcccchhcCceecCCC-----Cceeeecccc
Confidence 345666669999999999999999999999999999999999995 7999999999999997653 5688999999
Q ss_pred hhHHHHHHHhHhcCCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhh--HHHH---HHHHHHHHH
Q 015762 88 TVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSE--ADDE---ILELYRRIY 158 (401)
Q Consensus 88 ~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~--a~~e---il~~~~~i~ 158 (401)
+++++++++.+.|+++||+|++.+++|||.|.. .++||+|+|||++.|+.. ++++++ +.++ |++.+.+||
T Consensus 238 ~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~pe~~~s~~~~e~~l~~~~~i~ 316 (448)
T PLN02678 238 QPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNESWEMHEEMLKNSEDFY 316 (448)
T ss_pred cccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EECCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999974 477999999999999966 666665 6555 999999999
Q ss_pred HHhCcccEEe--------cCCC----C-------cccc-------------------------------ch---------
Q 015762 159 EEFLAVPVIK--------GKKS----E-------LENS-------------------------------KF--------- 179 (401)
Q Consensus 159 ~~l~~ipv~~--------g~k~----~-------~e~f-------------------------------nF--------- 179 (401)
..|+ +|+.. |... + ..+| .|
T Consensus 317 ~~L~-lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~l 395 (448)
T PLN02678 317 QSLG-IPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLT 395 (448)
T ss_pred HHcC-CCeEEEeecccccCCchhhceeeEeeccccCCceEEeeecccccHhhhcccceecccccCCCCceeEEecCCchh
Confidence 9875 88621 1110 0 0011 12
Q ss_pred ---HHHHHHHHHcCCCCCCCCCCCCCCce
Q 015762 180 ---VQIGVMVMVHGDDKGLMLPPKVASVQ 205 (401)
Q Consensus 180 ---Rli~~li~~~~dd~Gl~lP~~iap~q 205 (401)
|+|.||+|+|...+|+.+|..+-|+-
T Consensus 396 A~~R~l~AiLEn~Q~~dgi~iP~vL~pym 424 (448)
T PLN02678 396 ATERTLCCILENYQTEDGVRVPEVLQPFM 424 (448)
T ss_pred HHHHHHHHHHHhCcCCCCeECChhhhhhc
Confidence 99999999999888988999888874
No 49
>PF09180 ProRS-C_1: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR016061 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Prolyl tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This domain is found at the C-terminal in archaeal and eukaryotic enzymes, as well as in certain bacterial ones.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ6_A 1NJ2_A 1NJ5_A 1NJ1_A 1H4T_C 1H4S_A 1HC7_C 1H4Q_B 3IAL_B.
Probab=99.91 E-value=7.3e-25 Score=166.78 Aligned_cols=68 Identities=46% Similarity=0.997 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCEEEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 328 WDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 328 ~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
||||+++|++||||++||||+.+||++||+++ |||+|||||+.+. ..+.+|++||+||++++||||||
T Consensus 1 ~eE~k~~i~~gg~v~~pwcg~~ece~~ike~t-----~at~rciP~~~~~-~~~~~Ci~cgk~a~~~~~farsY 68 (68)
T PF09180_consen 1 YEEFKEAIEKGGFVLVPWCGDEECEEKIKEET-----GATIRCIPFDEQE-PEGGKCIVCGKPAKKWVLFARSY 68 (68)
T ss_dssp HHHHHHHHHTSSEEEEEES-SHHHHHHHHHHH-----S-EEEEEETTSCE-BTT-B-TTT-SB-SCEEEEE-B-
T ss_pred ChHHHHHHhCCCEEEEEccCCHHHHHHHHHhc-----CCcEeEeEccCCC-CCCCeeecCCChhhEEEEEEEEC
Confidence 79999999989999999999999999999999 9999999999322 24457999999999999999999
No 50
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.90 E-value=2.8e-23 Score=209.92 Aligned_cols=149 Identities=13% Similarity=-0.027 Sum_probs=133.0
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEc
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LR 83 (401)
...++||.|++|..+..+++|++.+++.|+++||++|.||+||+.++|.+++|.. ....||.|.|.++ ++.++||
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~--~~~~~y~f~D~~~---g~~l~LR 81 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQD--LKLQTFKLIDQLS---GRLMGVR 81 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCcc--chhceEEEEcCCC---CcEEEEC
Confidence 3689999999999999999999999999999999999999999999997665532 3467999999742 3789999
Q ss_pred CCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
|+.|+++++++++... ...|+|+||+|+|||++ +++.| |+|||+|.+++++|.+...||+|++.+..++++.++
T Consensus 82 pD~T~~iaR~~a~~~~--~~~p~R~~Y~g~VfR~~-~~~~g--r~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lg 155 (392)
T PRK12421 82 ADITPQVARIDAHLLN--REGVARLCYAGSVLHTL-PQGLF--GSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAG 155 (392)
T ss_pred CcCCHHHHHHHHhhcC--CCCceEEEEeeeEEEcC-CCcCC--CcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcC
Confidence 9999999998776542 26799999999999999 66779 999999999999999999999999999999999986
No 51
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.87 E-value=4.5e-22 Score=195.80 Aligned_cols=141 Identities=21% Similarity=0.161 Sum_probs=128.3
Q ss_pred EEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhH
Q 015762 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (401)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i 90 (401)
+|++|.++.+++.|++.+++.|+++||++|.||+|++.++|.+.++ ...++||.|.|.++ +.++|||+.|+++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~---~~~~~~~~~~d~~g----~~l~LRpD~T~~i 73 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG---ILNEDLFKLFDSLG----RVLGLRPDMTTPI 73 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC---cchhceEEEECCCC----CEEeecCcCcHHH
Confidence 4799999999999999999999999999999999999999975543 36789999999875 8999999999999
Q ss_pred HHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 91 ~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
+++++...+ ..++|+|++++|+|||+| +++.| |.|||+|.++|+++.+...||+|++.+..++++.++
T Consensus 74 aR~~~~~~~-~~~~p~r~~y~g~VfR~~-~~~~g--r~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg 141 (314)
T TIGR00443 74 ARAVSTRLR-DRPLPLRLCYAGNVFRTN-ESGAG--RSREFTQAGVELIGAGGPAADAEVIALLIEALKALG 141 (314)
T ss_pred HHHHHHhcc-cCCCCeEEEEeceEeecC-CCcCC--CcccccccceEEeCCCCchhHHHHHHHHHHHHHHcC
Confidence 999887665 457899999999999999 56778 999999999999999999999999999999999885
No 52
>PLN02320 seryl-tRNA synthetase
Probab=99.87 E-value=5e-22 Score=203.00 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=132.0
Q ss_pred CCccEE-ecchHHH-HHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccc-cceEEEecCCCCCCCcEEEc
Q 015762 7 ISGCYI-MRPWAIS-IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIR 83 (401)
Q Consensus 7 ~~G~~~-~~P~g~~-i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~-e~y~~~~~g~~~l~~~l~LR 83 (401)
++|... |+|.+.+ +...|++++.+...+.||++|.+|.|.+.++|. .+||+..|.+ .+|.+. +++++|.
T Consensus 220 vsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~-~sG~~p~~e~~~~y~ie-------~ed~~Li 291 (502)
T PLN02320 220 VSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVE-KCGFQPRGDNTQVYSID-------GSDQCLI 291 (502)
T ss_pred cCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHH-hcCCCcccccCceeEEC-------CCceEEe
Confidence 568887 5888666 558999999999999999999999999999995 7999887766 677663 2679999
Q ss_pred CCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhhHHHH---HHHHHHH
Q 015762 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRR 156 (401)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~ 156 (401)
||+|.++..++.+.+.++++||+|+..+++|||+|.. .++||+|+|||.+.|+|+ +|+++++++| |+++..+
T Consensus 292 ~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 292 GTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIEED 370 (502)
T ss_pred ecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHHHH
Confidence 9999999888889899999999999999999999975 467999999999999999 7888888877 9999999
Q ss_pred HHHHhCcccE
Q 015762 157 IYEEFLAVPV 166 (401)
Q Consensus 157 i~~~l~~ipv 166 (401)
+|+.|+ +|+
T Consensus 371 i~~~Lg-Lpy 379 (502)
T PLN02320 371 LFTSLG-LHF 379 (502)
T ss_pred HHHHcC-CCe
Confidence 999986 773
No 53
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.86 E-value=3.3e-21 Score=184.84 Aligned_cols=211 Identities=15% Similarity=0.148 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHh
Q 015762 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (401)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (401)
+.++++|++.+++.|+++||++|.||+|++.++|.+.. ++...++||+|.|.++ +.++|||+.|++++++++..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~--~~~~~~~~~~~~d~~g----~~l~LRpd~T~~iaR~~a~~ 75 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKS--GDEVSKEMYRFKDKGG----RDLALRPDLTAPVARAVAEN 75 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccc--cccccceEEEEECCCC----CEEEeCCCCcHHHHHHHHhc
Confidence 56899999999999999999999999999999996443 4457889999999874 88999999999999999987
Q ss_pred HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhCccc---EEecCCCCc
Q 015762 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVP---VIKGKKSEL 174 (401)
Q Consensus 98 i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~~ip---v~~g~k~~~ 174 (401)
..+ +++|+|+|++|+|||+| +++.| |.|||+|.++|+++.+...+|+|++.+..++++.++ ++ +..|..
T Consensus 76 ~~~-~~~p~k~~y~g~vfR~e-~~~~g--~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg-~~~~~i~l~~~--- 147 (261)
T cd00773 76 LLS-LPLPLKLYYIGPVFRYE-RPQKG--RYREFYQVGVEIIGSDSPLADAEVIALAVEILEALG-LKDFQIKINHR--- 147 (261)
T ss_pred Ccc-CCCCeEEEEEcCEEecC-CCCCC--CccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcC-CCceEEEECCH---
Confidence 665 57999999999999999 45677 999999999999999999999999999999999886 32 233332
Q ss_pred cccchHHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCC--CEEEEcCCCCCCHHHH
Q 015762 175 ENSKFVQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAG--IRANSDFRDNYSPGWK 252 (401)
Q Consensus 175 e~fnFRli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~G--irv~iD~~~~~s~g~k 252 (401)
.++-+++...+ +++.. . -.+.-.- ..+..+....+.+.|++.| ..+.+|... ...
T Consensus 148 -----~i~~~l~~~~~------~~~~~--~-~~l~~~l-----~~~~l~~l~~l~~~l~~~~~~~~i~~d~~~----~r~ 204 (261)
T cd00773 148 -----GILDGIAGLLE------DREEY--I-ERLIDKL-----DKEALAHLEKLLDYLEALGVDIKYSIDLSL----VRG 204 (261)
T ss_pred -----HHHHHHhhccC------CCHHH--H-HHHHHHh-----hHHHHHHHHHHHHHHHHcCCCceEEEcCcc----ccC
Confidence 34555543321 11110 0 0000000 0235566678888888878 457777653 233
Q ss_pred HHHHHHhCCCEEEEe
Q 015762 253 YSHWEMKGVPLRIEI 267 (401)
Q Consensus 253 ~~~ae~~GvP~~iii 267 (401)
+.|.. |+=+.+..
T Consensus 205 ~~YYt--G~vF~~~~ 217 (261)
T cd00773 205 LDYYT--GIVFEAVA 217 (261)
T ss_pred CcccC--ceEEEEEE
Confidence 45553 77777765
No 54
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.86 E-value=5.1e-21 Score=185.17 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=123.1
Q ss_pred CcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEE
Q 015762 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (401)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~ 81 (401)
.+...++|++|++|..+.+++.|++.+.+.|+++||++|.||+||..+++.. .-.++||.|.|+++ +.++
T Consensus 3 ~~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~------~~~~~~y~~~D~~g----~~l~ 72 (281)
T PRK12293 3 LEHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI------ADEKELIRFSDEKN----HQIS 72 (281)
T ss_pred CCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc------cchhceEEEECCCC----CEEE
Confidence 4678899999999999999999999999999999999999999999998842 23579999999864 8999
Q ss_pred EcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
|||+.|++++++++...+. ..+|+|+||+|+|||+| + |||+|.+++++|.+.. +|++.+..+.++.+
T Consensus 73 LRpD~T~~iaR~~a~~~~~-~~~p~r~~Y~g~vfR~~-~--------rEf~Q~GvEliG~~~~---~Evi~la~~~l~~l 139 (281)
T PRK12293 73 LRADSTLDVVRIVTKRLGR-STEHKKWFYIQPVFRYP-S--------NEIYQIGAELIGEEDL---SEILNIAAEIFEEL 139 (281)
T ss_pred ECCcCCHHHHHHHHHhccc-CCCceeEEEeccEEecC-C--------CcccccCeEeeCCCCH---HHHHHHHHHHHHHc
Confidence 9999999999998876543 36899999999999998 2 8999999999999875 58999999999988
Q ss_pred C
Q 015762 162 L 162 (401)
Q Consensus 162 ~ 162 (401)
+
T Consensus 140 g 140 (281)
T PRK12293 140 E 140 (281)
T ss_pred C
Confidence 6
No 55
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.84 E-value=1.6e-20 Score=184.23 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=119.5
Q ss_pred ccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCCh
Q 015762 9 GCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (401)
Q Consensus 9 G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~ 88 (401)
||.||+|..++.++.|++.+.+.|+++||++|.||+|++.+++...++. -.+++|.|.|+++ +.++|||+.|+
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~---~~~~~~~~~D~~G----~~l~LR~D~T~ 73 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGE---DSDNMYRFLDRSG----RVLALRPDLTV 73 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSST---TGGCSEEEECTTS----SEEEE-SSSHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcccc---chhhhEEEEecCC----cEeccCCCCcH
Confidence 8999999999999999999999999999999999999999999754432 2458999999864 89999999999
Q ss_pred hHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH-HhC
Q 015762 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE-EFL 162 (401)
Q Consensus 89 ~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~-~l~ 162 (401)
+++++++...+ ...|.|+|++|+|||++ +++.| |.|||+|.+++++|.+...+|+|++.+..++++ .++
T Consensus 74 ~iaR~~a~~~~--~~~~~r~~y~g~vfR~~-~~~~g--~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~ 143 (311)
T PF13393_consen 74 PIARYVARNLN--LPRPKRYYYIGPVFRYE-RPGKG--RPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELG 143 (311)
T ss_dssp HHHHHHHHCCG--SSSSEEEEEEEEEEEEE-TTTTT--BESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--cCCCceEEEEcceeecc-ccCCC--CCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcC
Confidence 99999988643 47899999999999999 66778 999999999999999999999999999999997 765
No 56
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.8e-20 Score=183.98 Aligned_cols=151 Identities=18% Similarity=0.226 Sum_probs=138.6
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
+.++++.+.+.+.++...|.+++-+...++||+++.+|.|++.+.+. .+|++.+|.++||.+.+ ..++|-||
T Consensus 162 sGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~-gtgqlpkf~e~~y~v~~-------~~~~LipT 233 (429)
T COG0172 162 SGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMF-GTGQLPKFEEDLYKVED-------PDLYLIPT 233 (429)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhh-ccCCCCCCcccceEecC-------CCEEEEec
Confidence 57899999999999999999999999999999999999999999995 79999999999999975 36999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC----CCCcccchhheeccceeecCChhhHHHH---HHHHHHHHH
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN----PTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIY 158 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~----~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~ 158 (401)
+|++++.++++.+....+||+++.-+++|||+|.-. ++|++|++||...|.-. .+.++++.++ |+....+++
T Consensus 234 aEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il 312 (429)
T COG0172 234 AEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVL 312 (429)
T ss_pred chhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHH
Confidence 999999999999988778999999999999999843 88999999999999988 7777777655 999999999
Q ss_pred HHhCcccE
Q 015762 159 EEFLAVPV 166 (401)
Q Consensus 159 ~~l~~ipv 166 (401)
+.|. +|+
T Consensus 313 ~~Le-LPy 319 (429)
T COG0172 313 QELE-LPY 319 (429)
T ss_pred HHhC-CCc
Confidence 9885 886
No 57
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.78 E-value=3.2e-18 Score=145.48 Aligned_cols=103 Identities=24% Similarity=0.405 Sum_probs=94.1
Q ss_pred CCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCC
Q 015762 195 LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAN 274 (401)
Q Consensus 195 l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~ 274 (401)
++||+|++|++|+|+|+++ + ++...++.++++.||++|++|++|++ . ++++|+++|++.|+|++|+||++|+++
T Consensus 18 ~~~P~~lap~~v~Ii~~~~-~---~~~~~~a~~la~~LR~~gi~v~~d~~-~-sl~kqlk~A~k~g~~~~iiiG~~e~~~ 91 (121)
T cd00858 18 LRLPPALAPIKVAVLPLVK-R---DELVEIAKEISEELRELGFSVKYDDS-G-SIGRRYARQDEIGTPFCVTVDFDTLED 91 (121)
T ss_pred EEcCCCcCCcEEEEEecCC-c---HHHHHHHHHHHHHHHHCCCEEEEeCC-C-CHHHHHHHhHhcCCCEEEEECcCchhC
Confidence 5899999999999999872 1 45678999999999999999999998 5 999999999999999999999999999
Q ss_pred CeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 275 DQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 275 ~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
|+|++++++++++.+++++++.+.+.+++
T Consensus 92 ~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 92 GTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred CEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 99999999999999999999888776654
No 58
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.77 E-value=2.4e-18 Score=139.25 Aligned_cols=93 Identities=35% Similarity=0.473 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCC
Q 015762 205 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 284 (401)
Q Consensus 205 qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~t 284 (401)
||+|+|++.+ +++..++|.++++.|+++||+|.+|+++ .++|+||++|++.|+||+|+||++|+++|+|+|++|++
T Consensus 1 qv~Ii~~~~~---~~~~~~~a~~l~~~L~~~gi~v~~d~~~-~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~ 76 (94)
T PF03129_consen 1 QVVIIPVGKK---DEEIIEYAQELANKLRKAGIRVELDDSD-KSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDT 76 (94)
T ss_dssp SEEEEESSCS---HHHHHHHHHHHHHHHHHTTSEEEEESSS-STHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTT
T ss_pred CEEEEEeCCC---cHHHHHHHHHHHHHHHHCCCEEEEECCC-CchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCC
Confidence 7999999954 2578999999999999999999999976 59999999999999999999999999999999999999
Q ss_pred CceeeechhhHHHHHHH
Q 015762 285 GAKIDLPRGSLVERVKE 301 (401)
Q Consensus 285 g~k~~v~~~el~~~i~~ 301 (401)
+++.+|+++++.+.+++
T Consensus 77 ~~~~~v~~~el~~~l~~ 93 (94)
T PF03129_consen 77 GEQETVSLEELIEYLKE 93 (94)
T ss_dssp TEEEEEECCHHHHHHHH
T ss_pred CcEEEEEHHHHHHHHhh
Confidence 99999999999999875
No 59
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.77 E-value=2.7e-18 Score=172.26 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhHhc
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRG 100 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s 100 (401)
.+.|.+.+++.|+++||++|.||+|++.++|...+|. ...++||.|.|+++ +.++|||+.|+++++++...
T Consensus 7 ~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~--~~~~~~~~f~D~~G----~~l~LRpD~T~piaR~~~~~--- 77 (373)
T PRK12295 7 SAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENG----EELCLRPDFTIPVCRRHIAT--- 77 (373)
T ss_pred HHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCc--hhhcceEEEECCCC----CEEeeCCCCcHHHHHHHHHc---
Confidence 4579999999999999999999999999999765553 34578999999875 89999999999999887654
Q ss_pred CCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecC-ChhhHHHHHHHHHHHHHHHhC
Q 015762 101 HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 101 ~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~eil~~~~~i~~~l~ 162 (401)
....|+|+||+|+|||+| .| |+|||+|.+++++|. +...||+|++.+..++++.++
T Consensus 78 ~~~~p~R~~Y~g~VfR~~----~g--r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lg 134 (373)
T PRK12295 78 AGGEPARYAYLGEVFRQR----RD--RASEFLQAGIESFGRADPAAADAEVLALALEALAALG 134 (373)
T ss_pred CCCCCeEEEEEccEEECC----CC--CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcC
Confidence 236899999999999999 46 999999999999996 457899999999999999886
No 60
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.73 E-value=2.3e-17 Score=133.21 Aligned_cols=93 Identities=28% Similarity=0.432 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEEC
Q 015762 203 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 282 (401)
Q Consensus 203 p~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r 282 (401)
|+||+|+|+..++ ++...++.+++..||++|++|++|++. .++|+++++|++.|+|++|+||++|+++|+|+|++|
T Consensus 1 P~qv~i~p~~~~~---~~~~~~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~ 76 (94)
T cd00861 1 PFDVVIIPMNMKD---EVQQELAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVR 76 (94)
T ss_pred CeEEEEEEcCCCc---HHHHHHHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEEC
Confidence 8999999998542 467889999999999999999999987 499999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015762 283 DNGAKIDLPRGSLVERV 299 (401)
Q Consensus 283 ~tg~k~~v~~~el~~~i 299 (401)
+++++..++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~l 93 (94)
T cd00861 77 KTGEKEEISIDELLEFL 93 (94)
T ss_pred CCCcceEEeHHHHHHhh
Confidence 99999999999887654
No 61
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.7e-17 Score=161.09 Aligned_cols=190 Identities=14% Similarity=0.178 Sum_probs=157.8
Q ss_pred CCcc--EEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 7 ISGC--YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 7 ~~G~--~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
++|. |.+...+..+-..|.++--+.+.+.||.++.+|.|.+.++++ +.|....|.++.|.+.|.+ .+.+|--
T Consensus 172 vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~-~cg~~~~~d~~~~y~ld~~-----~~~~Lia 245 (455)
T KOG2509|consen 172 VSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQ-KCGQLPRFDEEQYYVLDGG-----DEKYLIA 245 (455)
T ss_pred cccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHH-HhccCcCCCcceEEeecCC-----ccceeEe
Confidence 4444 568899999999999999999999999999999999999996 7888888999999999886 5789999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCC----CCCCCcccchhheeccceeecCChhhHH---HHHHHHHHHH
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATKSEAD---DEILELYRRI 157 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~~~a~---~eil~~~~~i 157 (401)
|+|.+++.++++.+....+||+|+.-.+.|||-|. +.++|++|++||...|... -++++++. +||+++-.++
T Consensus 246 TaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it~Pe~S~~~~eEmi~~~eef 324 (455)
T KOG2509|consen 246 TAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-ITGPEDSWEMLEEMINNQEEF 324 (455)
T ss_pred eccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ecCcchhHHHHHHHHHHHHHH
Confidence 99999999998776666899999999999999998 4578999999999999988 55655544 3499999999
Q ss_pred HHHhCcccEE-ecCCC------Cc------------ccc-------c------------------------h--------
Q 015762 158 YEEFLAVPVI-KGKKS------EL------------ENS-------K------------------------F-------- 179 (401)
Q Consensus 158 ~~~l~~ipv~-~g~k~------~~------------e~f-------n------------------------F-------- 179 (401)
|..|+ ||+- .+.-| .. .+| | |
T Consensus 325 ~qsLg-ip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yvHtLN~Ta 403 (455)
T KOG2509|consen 325 YQSLG-LPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYVHTLNGTA 403 (455)
T ss_pred HHHhC-CceeEecCCchhhCcHHHhhcchhhhcCcccccccccccccchhHHHhhhhhhcccccccCCccceeeecchhh
Confidence 99986 8862 11111 01 112 0 1
Q ss_pred ----HHHHHHHHHcCCCCCCCCCCCCCCc
Q 015762 180 ----VQIGVMVMVHGDDKGLMLPPKVASV 204 (401)
Q Consensus 180 ----Rli~~li~~~~dd~Gl~lP~~iap~ 204 (401)
|+|.+|+|+|.+.+|+.+|..+-|+
T Consensus 404 cA~~R~l~aiLEnyQ~edGi~VPe~Lr~y 432 (455)
T KOG2509|consen 404 CATPRALCAILENYQTEDGIEVPEVLRPY 432 (455)
T ss_pred HhhhHHHHHhHhhccCCCCccCCHhHHhh
Confidence 9999999999999999999877765
No 62
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.71 E-value=8.3e-17 Score=158.53 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=101.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHh
Q 015762 180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMK 259 (401)
Q Consensus 180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~ 259 (401)
|++.+++.......-+.||+|+||.||+|+|++ ++...+|.++++.||++|++|.+|++. .++|+|+++|++.
T Consensus 251 r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~------eel~e~AlkLA~eLR~aGIrVeiDl~s-rSLgKQiK~AdK~ 323 (387)
T PRK14938 251 LLVYYFLLESIRKQPPTLPDWLNPIQVRILPVK------KDFLDFSIQVAERLRKEGIRVNVDDLD-DSLGNKIRRAGTE 323 (387)
T ss_pred HHHHHHHHHhhhHHhCcCCCccCcceEEEEEeC------hHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHc
Confidence 888777554433335799999999999999997 457789999999999999999999987 5999999999999
Q ss_pred CCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015762 260 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 300 (401)
Q Consensus 260 GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~ 300 (401)
|+|++|+||++|+++|+|+|++|++++|..++++++.+.+.
T Consensus 324 GaPfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lk 364 (387)
T PRK14938 324 WIPFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIK 364 (387)
T ss_pred CCCEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 99999999999999999999999999999999998877665
No 63
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.68 E-value=1.4e-16 Score=158.34 Aligned_cols=148 Identities=15% Similarity=0.111 Sum_probs=132.2
Q ss_pred cccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEE
Q 015762 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (401)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~L 82 (401)
.++.+.|+.|.+|..+...+.|.+.+.+.|.++||+.|.||+|++.+.|.-..|+ +-...+|.++|..+ +.++|
T Consensus 2 ~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g----~~l~L 75 (390)
T COG3705 2 TWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETG----GRLGL 75 (390)
T ss_pred CCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccch--hhhhhheEEecCCC----CeEEe
Confidence 3578899999999999999999999999999999999999999999999755454 34568999999875 67999
Q ss_pred cCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
||+.|+++++..+....+ .|.|++|.|+|||.. +...| |..||+|.+++.+|.+...||+|++.+....++.++
T Consensus 76 RpD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~-~~~~g--~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~g 149 (390)
T COG3705 76 RPDFTIPVARIHATLLAG---TPLRLSYAGKVFRAR-EGRHG--RRAEFLQAGIELLGDDSAAADAEVIALALAALKALG 149 (390)
T ss_pred cccccHHHHHHHHHhcCC---CCceeeecchhhhcc-hhccC--cccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcC
Confidence 999999999988877654 899999999999998 65667 888999999999999999999999999888888876
No 64
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.65 E-value=1.5e-15 Score=121.55 Aligned_cols=90 Identities=29% Similarity=0.488 Sum_probs=83.1
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEEC
Q 015762 203 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 282 (401)
Q Consensus 203 p~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r 282 (401)
|+||+|++.+ +....+|.++++.||+.|++|++|++. .++|+++++|+++|+|++|+||++|+++++++++++
T Consensus 1 p~~v~ii~~~------~~~~~~a~~~~~~Lr~~g~~v~~d~~~-~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~ 73 (91)
T cd00860 1 PVQVVVIPVT------DEHLDYAKEVAKKLSDAGIRVEVDLRN-EKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTR 73 (91)
T ss_pred CeEEEEEeeC------chHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEEC
Confidence 7899999986 457789999999999999999999987 599999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015762 283 DNGAKIDLPRGSLVERV 299 (401)
Q Consensus 283 ~tg~k~~v~~~el~~~i 299 (401)
.++++..++++++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~ 90 (91)
T cd00860 74 DGGDLGSMSLDEFIEKL 90 (91)
T ss_pred CCCccceEcHHHHHHHh
Confidence 99999999988876654
No 65
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.58 E-value=2.7e-14 Score=114.86 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=83.3
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEEC
Q 015762 203 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRR 282 (401)
Q Consensus 203 p~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r 282 (401)
|++|+|+|++.+. +....++..+++.||+.|++|++|++. .++++++++|++.|+|++++||++|+++++++++++
T Consensus 1 p~~v~ii~~~~~~---~~~~~~a~~~~~~Lr~~g~~v~~~~~~-~~~~k~~~~a~~~g~~~~iiig~~e~~~~~v~i~~~ 76 (94)
T cd00738 1 PIDVAIVPLTDPR---VEAREYAQKLLNALLANGIRVLYDDRE-RKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSR 76 (94)
T ss_pred CeEEEEEECCCCc---HHHHHHHHHHHHHHHHCCCEEEecCCC-cCHhHHHHHHHhCCCCEEEEECCChhhCCEEEEEEC
Confidence 6789999987311 367889999999999999999999986 599999999999999999999999999999999999
Q ss_pred CCCceeeechhhHHHHH
Q 015762 283 DNGAKIDLPRGSLVERV 299 (401)
Q Consensus 283 ~tg~k~~v~~~el~~~i 299 (401)
+++++..++++++.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~i 93 (94)
T cd00738 77 DTGESETLHVDELPEFL 93 (94)
T ss_pred CCCceeEEEHHHHHhhc
Confidence 99999999998876543
No 66
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.51 E-value=1.1e-13 Score=138.81 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc--cccccceEEEecCCCCCCCcEEEcCCCChhHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYF 94 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~--~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~ 94 (401)
...-++.+++.+++.|..+||++|.||+|++.+.+++ .++.+ .+.++||.+. +.++|||+.++++.+++
T Consensus 238 ~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~-m~~~~g~eI~n~Iyk~e--------e~lvLRPdLTPsLaR~L 308 (453)
T TIGR02367 238 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLAPNLYNYL 308 (453)
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHh-hcCccCCcccccceEec--------CceEecccCHHHHHHHH
Confidence 4456889999999999999999999999988777743 33332 2567888762 46999999999988877
Q ss_pred HHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhCcccE
Q 015762 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPV 166 (401)
Q Consensus 95 ~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~~ipv 166 (401)
+...+ +..+|+|+|++|+|||+| +++.+ |+|||+|.++.++|.+...++.+ .+...+++.++ +.+
T Consensus 309 a~N~~-~l~~PqKIFEIGkVFR~E-~~~~t--hlREF~QL~~eIaG~~atfaDle--alL~e~Lr~LG-Idf 373 (453)
T TIGR02367 309 RKLDR-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLNFCQMGSGCTRENLE--AIIKDFLDHLE-IDF 373 (453)
T ss_pred HHhhh-hccCCeeEEEEcCeEecC-CCCCC--CcCeEEEEEEEEECCCCCHHHHH--HHHHHHHHHCC-Cce
Confidence 65422 347899999999999999 66788 99999999999999887766555 57778888775 544
No 67
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.50 E-value=1.8e-13 Score=125.67 Aligned_cols=131 Identities=23% Similarity=0.281 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhHh
Q 015762 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (401)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (401)
+|+.+++.+++.+...||++|.||+|++.+.+. ..++. .+.+..+.+.. ++..+|||+.++++..+++++.
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~-~~~~~---~~~~~~~~~~~----~~~~~LR~s~~~~l~~~~~~n~- 71 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLE-KAGHE---PKDLLPVGAEN----EEDLYLRPTLEPGLVRLFVSHI- 71 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHH-HcCcc---HhheeeeecCC----CCEEEECCCCcHHHHHHHHhhc-
Confidence 378899999999999999999999999998885 34432 23455555544 3789999999999999998877
Q ss_pred cCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhh--HHHHHHHHHHHHHHHhC
Q 015762 100 GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSE--ADDEILELYRRIYEEFL 162 (401)
Q Consensus 100 s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~--a~~eil~~~~~i~~~l~ 162 (401)
+++|+|+|++|+|||.|.. +.++.|++||.|.+++.+|...++ ...++..++..+++.++
T Consensus 72 --~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg 133 (211)
T cd00768 72 --RKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALG 133 (211)
T ss_pred --ccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999954 444568999999999999876543 24458899999998876
No 68
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.43 E-value=1.1e-12 Score=126.11 Aligned_cols=123 Identities=10% Similarity=0.027 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccc-eEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEV-AWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~-y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
..-.+.|++.+++.|+++||++|.||+||+.+++. .+++ .....+ +.+.+.++ +.++|||+.|++++++++.
T Consensus 7 ~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~-~~~~--~~~~~~~~~~~~~~G----r~laLRpD~T~~iAR~~a~ 79 (272)
T PRK12294 7 LIALKESETAFLKYFNKADYELVDFSVIEKLDWKQ-LNHE--DLQQMGERSFWQHEH----QIYALRNDFTDQLLRYYSM 79 (272)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhh-cccc--chhhhheeeeecCCC----CEEEEcCCCCHHHHHHHHh
Confidence 34567899999999999999999999999999973 2332 122233 44555453 9999999999999998765
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
.. .-|.|++++|+|||++ + +|+|.+++++|.. .+++.|++.+..+.+.+++
T Consensus 80 ~~----~~~~Rl~Y~g~VfR~~-~---------~~~Q~GvEliG~~-~~a~~e~l~la~~~l~~~g 130 (272)
T PRK12294 80 YP----TAATKVAYAGLIIRNN-E---------AAVQVGIENYAPS-LANVQQSFKLFIQFIQQQL 130 (272)
T ss_pred cC----CCCceEEEeccEeccC-C---------CcceeceEEECCC-chhHHHHHHHHHHHHHHhC
Confidence 32 3467999999999998 3 2799999999955 6888888888888887774
No 69
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.40 E-value=1.9e-12 Score=130.19 Aligned_cols=130 Identities=11% Similarity=0.126 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc--cccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhH
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~--~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (401)
+..|++.+++.|..+||++|.||+|.+.+.|. ..++.. .+.+++|.+ ++.++|||+.+++++.+++..
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e-~~g~~~g~~i~~~my~i--------deel~LRpsLtPsLlr~la~n- 275 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIE-RMGIDNDTELSKQIFRV--------DKNFCLRPMLAPGLYNYLRKL- 275 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHH-HhCCCCcccchhhheee--------CCceEehhhhHHHHHHHHHhh-
Confidence 67899999999999999999999999999885 455543 245678775 257999999999988877643
Q ss_pred hcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhCcccE
Q 015762 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPV 166 (401)
Q Consensus 99 ~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~~ipv 166 (401)
.++.++|+|+|++|+|||+| .++.+ ++|||+|.++.+++.+... +++..+..++|+.++ +++
T Consensus 276 ~k~~~~P~RIFEIG~VFR~E-~~g~~--hlrEf~Ql~~~iiGs~~~f--~dL~~lleeLL~~LG-I~f 337 (417)
T PRK09537 276 DRILPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMVNFCQMGSGCTR--ENLENIIDDFLKHLG-IDY 337 (417)
T ss_pred hhcccCCeeEEEEeceEecC-CCCCC--CcceEEEEEEEEeCCchHH--HHHHHHHHHHHHHCC-CCc
Confidence 33467899999999999999 45566 9999999999998765433 346788889999886 664
No 70
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.30 E-value=2.6e-11 Score=96.02 Aligned_cols=88 Identities=23% Similarity=0.382 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCC
Q 015762 205 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDN 284 (401)
Q Consensus 205 qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~t 284 (401)
+|+|+|.+ +.....|.++++.||+.|++|+++... .++++++.+|.+.|+|+++++|+++..++++.++++++
T Consensus 3 ~v~i~~~~------~~~~~~a~~i~~~Lr~~g~~v~~~~~~-~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~ 75 (91)
T cd00859 3 DVYVVPLG------EGALSEALELAEQLRDAGIKAEIDYGG-RKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLET 75 (91)
T ss_pred cEEEEEcC------hHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCC
Confidence 68888877 456788999999999999999999876 48999999999999999999999999999999999999
Q ss_pred CceeeechhhHHHHH
Q 015762 285 GAKIDLPRGSLVERV 299 (401)
Q Consensus 285 g~k~~v~~~el~~~i 299 (401)
+++..++++++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~ 90 (91)
T cd00859 76 GEQETVALDELVEEL 90 (91)
T ss_pred CCcEEEeHHHHHHHh
Confidence 999899988776544
No 71
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.25 E-value=1.5e-11 Score=128.12 Aligned_cols=141 Identities=13% Similarity=0.089 Sum_probs=107.1
Q ss_pred CccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccCh-----hhh--------------hhhccCcccc-ccc---
Q 015762 8 SGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-----TVL--------------QKEKDHIEGF-APE--- 64 (401)
Q Consensus 8 ~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~-----~l~--------------~k~~gh~~~f-~~e--- 64 (401)
.| .+++|.....+..+.+.++++|..+||+++.+|++++. .|| ..+.+..... .+.
T Consensus 223 ~~-~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~ 301 (489)
T PRK04172 223 PP-PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVER 301 (489)
T ss_pred CC-CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHH
Confidence 44 78999999999999999999999999999999999954 333 2221110000 011
Q ss_pred ----------------ceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccc
Q 015762 65 ----------------VAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRS 128 (401)
Q Consensus 65 ----------------~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~ 128 (401)
+|.+.+.+ .+.++|||..|+++.++++. +...|+|+|++|+|||+| +++.+ |+
T Consensus 302 v~~~he~g~~~~~~~~~y~~~~~~----~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e-~~d~~--~l 370 (489)
T PRK04172 302 VKEVHEHGGDTGSRGWGYKWDEDI----AKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPD-TIDAT--HL 370 (489)
T ss_pred HHHHHhccCCCCCccccCCcchhh----hhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCC-CCCcc--cC
Confidence 34444433 37899999999998888776 346899999999999999 55777 88
Q ss_pred hhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 129 REFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 129 REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
|||+|.++.+++.... ..++..+...++..++
T Consensus 371 ~Ef~ql~~~i~G~~~~--f~elkg~l~~ll~~lG 402 (489)
T PRK04172 371 PEFYQLEGIVMGEDVS--FRDLLGILKEFYKRLG 402 (489)
T ss_pred CchheEEEEEEeCCCC--HHHHHHHHHHHHHHhC
Confidence 9999999999887432 4567888888888875
No 72
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6.1e-11 Score=122.08 Aligned_cols=115 Identities=28% Similarity=0.440 Sum_probs=103.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCC-CEEEEcCCCCCCHHHHHHHHHH
Q 015762 180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAG-IRANSDFRDNYSPGWKYSHWEM 258 (401)
Q Consensus 180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~G-irv~iD~~~~~s~g~k~~~ae~ 258 (401)
|+++++++++.|++|++||..+||+++.|++++.++ .+....+.++...|...| ..|.+|+++. ++|.++..|+.
T Consensus 383 r~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~---~~~~~~~~~~~~~l~~~G~~e~~~ddr~e-r~g~k~~~a~l 458 (500)
T COG0442 383 RLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKD---FKQAEAAEKLYVELPWCGTVEVLLDDRDE-RPGVKFADADL 458 (500)
T ss_pred hHHHHHHHHhcccccCccccccCcceeEEEEcCchh---HHHHHHhhhHHHHHHhCCchhhhhhhhcc-ccCccccCCeE
Confidence 999999999999999999988999999999998542 556677888899999999 9999999985 99999999999
Q ss_pred hCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHH
Q 015762 259 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERV 299 (401)
Q Consensus 259 ~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i 299 (401)
+|+|+++++|++ .++|.|.++.|.+|++..++...+.+.+
T Consensus 459 iGiP~~~~~g~~-~~~g~~e~k~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 459 IGIPLRIVVGKR-LAEGEVEVKCRKCGEKEAVTIEALFARL 498 (500)
T ss_pred ecccceeeeccc-ccCCceeEEecCCCchhhccHHHHHHHh
Confidence 999999999999 8889999999999999888877776654
No 73
>PRK09350 poxB regulator PoxA; Provisional
Probab=98.92 E-value=3.1e-09 Score=104.33 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEc--CCCChhHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR--PTSETVMYPYF 94 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LR--Pt~e~~i~~~~ 94 (401)
-++++..|.+.+++.|.+.||.+|.||+|+...... .+...|..+ |.+.+.+. ++.++|| |+.+ +
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~---~~~~~f~~~-y~~~~~~~---~~~~~L~~SPe~~------~ 70 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTD---IHLVPFETR-FVGPGASQ---GKTLWLMTSPEYH------M 70 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCC---ccCCceeee-eccccccC---CcceEEecCHHHH------H
Confidence 467899999999999999999999999998755431 233334434 44444222 4789999 6543 2
Q ss_pred HHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 95 ~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
++.+.+. +. |+||+|+|||+|.+ +.+ +.+||+|.|.+.++.+..+....+-++...++.
T Consensus 71 kr~la~~--~~-rvf~i~~~FR~e~~-~~~--H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~ 129 (306)
T PRK09350 71 KRLLAAG--SG-PIFQICKSFRNEEA-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD 129 (306)
T ss_pred HHHhhcc--cc-ceEEecceeecCCC-CCC--CCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHh
Confidence 3323332 33 99999999999965 666 999999999999998877666555555555543
No 74
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.85 E-value=1.7e-08 Score=103.81 Aligned_cols=146 Identities=13% Similarity=0.092 Sum_probs=104.0
Q ss_pred EecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhh-----hhccCcccccccceEEEecCC-------------
Q 015762 12 IMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKSGE------------- 73 (401)
Q Consensus 12 ~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~-----k~~gh~~~f~~e~y~~~~~g~------------- 73 (401)
...+........+.+.++++|...||+++.+|-.+-.+.|. --..|-.-=..+.|.+.+...
T Consensus 222 ~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~ 301 (494)
T PTZ00326 222 KIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVER 301 (494)
T ss_pred CCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHH
Confidence 34455666778899999999999999999988444334331 112222111123555643100
Q ss_pred --------------------CCCCCcEEEcCCCChhHHHHHHHhHhcC---CC-CCeEEEeeecceecCCCCCCCcccch
Q 015762 74 --------------------SDLEVPIAIRPTSETVMYPYFSKWIRGH---RD-LPLKLNQWCNVVRWEFSNPTPFIRSR 129 (401)
Q Consensus 74 --------------------~~l~~~l~LRPt~e~~i~~~~~~~i~s~---~~-LPlk~~q~~~vfR~E~~~~~gllR~R 129 (401)
.+....++||+..|+..+++++.+.+.+ .. .|+|++++|+|||+| .+..+ |++
T Consensus 302 Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d-~~Dat--H~~ 378 (494)
T PTZ00326 302 VKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNE-TLDAT--HLA 378 (494)
T ss_pred HHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCC-CCCCC--cCc
Confidence 0112579999999999999888765431 12 399999999999999 56888 999
Q ss_pred hheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 130 EFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 130 EF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
||+|.|+.+++.+. ++++++.+...+|+.+|
T Consensus 379 eFhQ~Eg~vi~~~~--s~~~L~~~l~~f~~~lG 409 (494)
T PTZ00326 379 EFHQVEGFVIDRNL--TLGDLIGTIREFFRRIG 409 (494)
T ss_pred eeEEEEEEEEeCCC--CHHHHHHHHHHHHHhcC
Confidence 99999999988775 66788888999998875
No 75
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.82 E-value=2.8e-08 Score=95.80 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhH
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (401)
+++..|.+.+++.|.+.||.+|.||+|.... +| + .-+.|.+...+. ++.+.|+-..+-. .+..+
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~-----~~---~-~~~~f~~~~~~~---g~~~~L~~Spql~----~~~~~ 65 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKIT-----GG---A-GARPFLVKYNAL---GLDYYLRISPQLF----KKRLM 65 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccC-----Cc---c-ccceEEeeecCC---CCcEEeecCHHHH----HHHHH
Confidence 5788999999999999999999999999652 11 1 125576643211 3788998433321 22223
Q ss_pred hcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 99 ~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
.+..+ |+||+++|||+| .++.. |++||+|.|++.++.+..+....+-++...++..+
T Consensus 66 ~~~~~---~vf~i~~~fR~e-~~~~~--hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~ 122 (269)
T cd00669 66 VGGLD---RVFEINRNFRNE-DLRAR--HQPEFTMMDLEMAFADYEDVIELTERLVRHLAREV 122 (269)
T ss_pred hcCCC---cEEEEecceeCC-CCCCC--cccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 33222 999999999999 77777 99999999999988877776655555555555443
No 76
>PRK07080 hypothetical protein; Validated
Probab=98.79 E-value=8.2e-08 Score=92.88 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=108.5
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcC----CeEeccCCccChhhhhhhccCcccccccceEEEec-CCC-----
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMK----IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GES----- 74 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G----~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~-g~~----- 74 (401)
..+.|.|-. ..+++.|.+.++..+.++| ++++.||.+.|.+.|+ +++++++|-..++.|..- |++
T Consensus 34 ~g~~g~ygr----s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~e-k~~Y~ksFP~l~~~V~~~~g~~~e~~~ 108 (317)
T PRK07080 34 TGVDGLYGR----SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFE-RSGYLKSFPQLAGTVHSFCGNEAEHRR 108 (317)
T ss_pred cCCCccccc----cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHH-hcChhhhCcccceeecCCCCCCHHHHH
Confidence 345666543 2456777777777777777 9999999999999996 699999998888877542 110
Q ss_pred -------------C-CCCcEEEcCCCChhHHHHHHHh-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceee
Q 015762 75 -------------D-LEVPIAIRPTSETVMYPYFSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTA 139 (401)
Q Consensus 75 -------------~-l~~~l~LRPt~e~~i~~~~~~~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~ 139 (401)
. -...++|.|..|.++|+++++. ... .+- ..+--.|.|||||. ..++-|+.||+|-|.-.+
T Consensus 109 ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp-~~g-~~~dv~g~CFR~E~--s~dl~Rl~~F~mrE~V~i 184 (317)
T PRK07080 109 LLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALP-ADG-RLVDVASYCFRHEP--SLDPARMQLFRMREYVRI 184 (317)
T ss_pred HHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccC-CCC-cEEEeeeeeeccCC--CCCcHHHhheeeeEEEEe
Confidence 0 1247999999999999988753 221 121 44555799999994 467889999999999998
Q ss_pred cCChhhHHHH---HHHHHHHHHHHhCcccE
Q 015762 140 FATKSEADDE---ILELYRRIYEEFLAVPV 166 (401)
Q Consensus 140 ~~~~~~a~~e---il~~~~~i~~~l~~ipv 166 (401)
| +++++.+- .++....+.+.|+ +++
T Consensus 185 G-t~e~v~~~r~~w~e~~~~l~~~Lg-L~~ 212 (317)
T PRK07080 185 G-TPEQIVAFRQSWIERGTAMADALG-LPV 212 (317)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhC-Cce
Confidence 8 55555332 4566666666664 665
No 77
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.36 E-value=2.5e-06 Score=84.46 Aligned_cols=119 Identities=21% Similarity=0.180 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-+.++..|.+.+++.|.+.||.+|.||+|+.... .++.+.| .+.-- ++++.|+...+-. .+.
T Consensus 23 ~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~----e~~~~~f-----~~~~~-----~~~~yL~~Spql~----lk~ 84 (322)
T cd00776 23 IFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT----EGGAELF-----KVSYF-----GKPAYLAQSPQLY----KEM 84 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC----CccCCcc-----ccccC-----CCcceecCCHHHH----HHH
Confidence 4678999999999999999999999999997331 2233223 33222 3677887654422 222
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecC-ChhhHHHHHHHHHHHHHH
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEILELYRRIYE 159 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~eil~~~~~i~~ 159 (401)
-+.+ -=|+||+|+|||+|...+. -...||+|.|.+.+++ +..+..+.+-++...++.
T Consensus 85 l~~~----~~~vf~i~~~FR~E~~~~~--rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~ 142 (322)
T cd00776 85 LIAA----LERVYEIGPVFRAEKSNTR--RHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFK 142 (322)
T ss_pred HHHh----hhhhEEeccccccCCCCcC--CCcceeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 2222 1388999999999953332 2678999999999998 766665554444444443
No 78
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=6.7e-06 Score=91.04 Aligned_cols=130 Identities=15% Similarity=0.032 Sum_probs=102.2
Q ss_pred EEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhH
Q 015762 11 YIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVM 90 (401)
Q Consensus 11 ~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i 90 (401)
..+.|.-..+++.+.+.+-++|+++|+.++.||.+.+..-= -.+..+.+.|-|+|| ..+.|-.+...++
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~-------~~~~~~~v~~ld~sG----~~v~Lp~DLr~pf 993 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNAC-------AYFSRKAVELLDHSG----DVVELPYDLRLPF 993 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCcccccccc-------chhccceeeeecCCC----CEEEeeccccchH
Confidence 45677788899999999999999999999999966543321 135677888888885 8999999999887
Q ss_pred HHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 91 ~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
++++++. ..+-+|.|.++.|||-+. ...| +|+++++.++++.+.--.+||+|.++.+|...
T Consensus 994 ar~vs~N----~~~~~Kry~i~rVyr~~~-~~hP----~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 994 ARYVSRN----SVLSFKRYCISRVYRPAI-HNHP----KECLECDFDIIGPTTSLTEAELLKVIVEITTE 1054 (1351)
T ss_pred HHHhhhc----hHHHHHHhhhheeecccc-cCCC----ccccceeeeEecCCCCccHHHHHHHHHHHHHH
Confidence 6665543 346789999999999995 3456 89999999999998778888966666555443
No 79
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.36 E-value=1.7e-06 Score=83.99 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHh-
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW- 97 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~- 97 (401)
+++..|.+.+|+.|.+.||.+|.||+|....-- |- .+ |.+..... .+..+.|+-..+ ++.+.
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~----g~-----~~-f~~~~~~~--~~~~~~L~~Spq-----l~lk~l 64 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTPE----GA-----RD-FLVPSRLH--PGKFYALPQSPQ-----LFKQLL 64 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCCC----CC-----CC-ceeccccC--CCceeecccCHH-----HHHHHH
Confidence 578899999999999999999999999854321 11 11 22111110 013444553222 33333
Q ss_pred HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 98 i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
+.+. + =|+||+|+|||+|. .+.+ |..||+|.|++.++.+-++....+-++...++..+
T Consensus 65 l~~g--~-~~v~~i~~~fR~e~-~~~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~ 122 (280)
T cd00777 65 MVSG--F-DRYFQIARCFRDED-LRAD--RQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEV 122 (280)
T ss_pred HhcC--c-CcEEEeccceeCCC-CCCC--ccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 2221 2 38999999999994 4667 88999999999999887777666555555555544
No 80
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.32 E-value=5.2e-06 Score=82.59 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+++.|.+.||.+|.||+|..... . + ..+.|.+....+...++++.|+...+-.+-.+.+.
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~----~----~-~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~ 91 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC----E----G-GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAA 91 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS----S----S-SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc----C----c-cccccccccchhhhcccceecCcChHHHHhhhccc
Confidence 4678999999999999999999999999987542 1 2 34667776221112247888998776433222222
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
. + =|+||+|+|||.|...+. .-.-||+|.|.+.++++..+..+.+-++...+++.+
T Consensus 92 g------~-~~vf~i~~~FR~E~~~~~--rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~ 147 (335)
T PF00152_consen 92 G------L-ERVFEIGPCFRNEESRTR--RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKEL 147 (335)
T ss_dssp T------H-SEEEEEEEEE-BSSSCBT--TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHH
T ss_pred c------c-hhhhheecceeccCcccc--cchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHH
Confidence 1 2 389999999999954122 145599999999999998886666555555554433
No 81
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=98.32 E-value=3.1e-06 Score=83.12 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH-h
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK-W 97 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~-~ 97 (401)
++|..|.+.+++.|.++||.+|.||+|++...- -++. +.|.+..-+..-++.+..|+-.++ ++.+ -
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~---e~~~-----~~F~~~y~~~~~~~~~~yL~~Spq-----l~lk~l 68 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPVT---DPHL-----DAFATEFLGPDGEGRPLYLQTSPE-----YAMKRL 68 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCCC---CcCC-----cceeeeccCCCCCCcceeeecCHH-----HHHHHH
Confidence 578999999999999999999999999976321 1122 234333211001235677776554 2333 2
Q ss_pred HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 98 i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
+.+ .+ =|+|++|+|||+|.... -.+-||+|.|++.++.+..+..+.+-+++..++.
T Consensus 69 l~~--g~-~rVfeigp~FRaE~~~~---rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~ 124 (304)
T TIGR00462 69 LAA--GS-GPIFQICKVFRNGERGR---RHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLG 124 (304)
T ss_pred Hhc--cC-CCEEEEcCceeCCCCCC---CcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 333 22 48999999999996532 2677999999999888766665555555555554
No 82
>PRK06462 asparagine synthetase A; Reviewed
Probab=98.20 E-value=9.8e-06 Score=80.69 Aligned_cols=127 Identities=12% Similarity=-0.007 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhh-hhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l-~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
-++++..|.+.+|+.|.+.||.+|.||+|....- .. ..|-..+| ..+.+..- +.++.|+...+ +++
T Consensus 29 il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~-~~g~~~~~--~~~~~~~~-----~~~~yL~~Spq-----l~k 95 (335)
T PRK06462 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLM-GLGSDLPV--KQISIDFY-----GVEYYLADSMI-----LHK 95 (335)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCC-CccccCCc--cccccccC-----CCceeeccCHH-----HHH
Confidence 5688999999999999999999999999986510 00 00100011 12222222 26788877644 334
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
+.+.+- + =|+||+|++||+|...+.+=-..-||+|.|.+.++.+-.+..+.+-++...++.
T Consensus 96 ~ll~~g--~-~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~ 156 (335)
T PRK06462 96 QLALRM--L-GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVK 156 (335)
T ss_pred HHHHhh--c-CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHH
Confidence 333321 2 489999999999976551112678999999999898877666554444444443
No 83
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.18 E-value=1.5e-05 Score=79.23 Aligned_cols=123 Identities=12% Similarity=0.134 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-.+++..|...+|+.|...||.+|.||+|.+..- .++. +.|.+..... +++..|+-.++- +.+.
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----~~~~-----~~f~~~~~~~---~~~~yL~~Spql----~~k~ 70 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAG----GAAA-----RPFITHHNAL---DMDLYLRIAPEL----YLKR 70 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCCC----Cccc-----eeEEeccCCC---CcceeeccCHHH----HHHH
Confidence 3578899999999999999999999999976531 1111 2343321111 366777754432 1223
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
.+.+. + =++||+|+|||.|.... -++-||+|.|.+.++.+..+....+-++...+++.+
T Consensus 71 ll~~g--~-~~vf~i~~~FR~E~~~~---rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i~~~~ 129 (329)
T cd00775 71 LIVGG--F-ERVYEIGRNFRNEGIDL---THNPEFTMIEFYEAYADYNDMMDLTEDLFSGLVKKI 129 (329)
T ss_pred HHhcC--C-CcEEEEeccccCCCCCC---CCCCceEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 23332 2 48999999999996532 377899999999988887776666555555555443
No 84
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3.4e-06 Score=80.11 Aligned_cols=131 Identities=14% Similarity=0.042 Sum_probs=91.9
Q ss_pred EEecch----HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCC
Q 015762 11 YIMRPW----AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (401)
Q Consensus 11 ~~~~P~----g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~ 86 (401)
..|.|. ....|.+|++.+|..|...||-||+||+|.....- --|+.-|.-|...-.+.+ ...+.|.+.-
T Consensus 5 ~~W~p~~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vt---d~hL~~F~Te~~~~~~~~----~~~l~L~TSP 77 (322)
T COG2269 5 PWWQPSASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVT---DIHLHPFETEFLGPGGAK----GKPLWLHTSP 77 (322)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCC---ccceeeeeeEEeccCccc----cceeeeecCc
Confidence 445553 35679999999999999999999999999765443 236666765543322221 3788998887
Q ss_pred ChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHH
Q 015762 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIY 158 (401)
Q Consensus 87 e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~ 158 (401)
|-.+-++.+.. --.+||+|.|||++- .|-+---||+|.|-+.+|++......|+-++...++
T Consensus 78 Ey~mKrLLAag-------~~~ifql~kvfRN~E---~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl 139 (322)
T COG2269 78 EYHMKRLLAAG-------SGPIFQLGKVFRNEE---MGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVL 139 (322)
T ss_pred HHHHHHHHHcc-------CCcchhhhHHHhccc---ccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHH
Confidence 76544444332 236899999999993 562233499999999999998887777555444444
No 85
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=98.11 E-value=2.1e-05 Score=80.84 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+++.|.+.||.+|.||+|..... -|+ -+.|.++.-+ .++.|+-..+ ++.
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg~-----~~~f~v~~~~-----~~~yL~~Spq-----l~~ 191 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT----EGG-----TELFPITYFE-----REAFLGQSPQ-----LYK 191 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC----CCC-----cceeeeEecC-----CcEEECcCHH-----HHH
Confidence 45688999999999999999999999999974321 122 2345555443 5677765443 233
Q ss_pred Hh-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 96 ~~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
+. +.+ .+ =|+||+|++||+|...+.= -.-||+|.|++.++.+.++....+-++...++.
T Consensus 192 q~li~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~ 251 (428)
T TIGR00458 192 QQLMAA--GF-ERVYEIGPIFRAEEHNTHR--HLNEATSIDIEMAFEDHHDVMDILEELVVRVFE 251 (428)
T ss_pred HHHHhc--cc-CcEEEEecccccCCCCCcc--chheeeEeeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 33 333 22 3899999999999653321 346999999999998876655443333334443
No 86
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.07 E-value=2.5e-05 Score=82.75 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEec-CCCCCCCcEEEcCCCChhHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~-g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
-++++..|...+|+.|...||.+|.||+|.+..- +.+ . + |.+... .+ +.-++|+- |.. +|.
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~---eGa-----r-~-f~vp~~~~~---~~~y~L~q-SpQ----lyk 198 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP---EGA-----R-D-YLVPSRVHK---GEFYALPQ-SPQ----LFK 198 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC---CCC-----c-c-eeeeeecCC---CceeecCC-CHH----HHH
Confidence 4578999999999999999999999999986331 111 1 1 222221 11 14455653 322 344
Q ss_pred Hh-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhCc
Q 015762 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLA 163 (401)
Q Consensus 96 ~~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~~ 163 (401)
+. +.+ .+ =|+||+|+|||+|.. ... |.-||+|.|++.++++.++....+-++...+++.+.+
T Consensus 199 q~l~v~--G~-ervfqI~~~FR~E~~-~t~--r~pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~ 261 (583)
T TIGR00459 199 QLLMVS--GV-DRYYQIARCFRDEDL-RAD--RQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKG 261 (583)
T ss_pred HHHHhc--cc-CcEEEEcceeeCCCC-CCC--CCcccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 43 222 12 389999999999954 345 8899999999999998777766655666666665543
No 87
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=98.07 E-value=3.1e-05 Score=80.87 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|...+|+.|...||.+|.||+|.+.. .| =+.+.|.+.... ++.++.|+-..+ ++.
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~G----a~a~pF~t~~~~---~~~~~yL~~Spq-----l~l 232 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GG----AAARPFITHHNA---LDIDLYLRIAPE-----LYL 232 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CC----ccceeeeecccc---CCCceEeccCHH-----HHH
Confidence 3567899999999999999999999999997532 12 111234322111 135677775443 233
Q ss_pred H-hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 96 K-WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 96 ~-~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
+ .+.+- + =|+||+|++||+|...++ +.-||+|.|++.++++.++....+-++...++..+
T Consensus 233 k~l~v~g--~-~rVfei~~~FR~E~~~~r---H~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~~~~ 293 (491)
T PRK00484 233 KRLIVGG--F-ERVYEIGRNFRNEGIDTR---HNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAV 293 (491)
T ss_pred HHHHhcc--C-CcEEEEecceecCCCCCC---cCCceEEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 3 23322 2 489999999999965443 78899999999999887776655445555555544
No 88
>PLN02903 aminoacyl-tRNA ligase
Probab=98.05 E-value=2.4e-05 Score=83.40 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHH-cCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKK-MKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~-~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
-++++..|...+|+.|.. .||-||.||+|....- +.+ .+.+....... +..++|+- |-. +|.
T Consensus 202 ~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~---eGa------rdf~v~~~~~~---g~~y~L~q-SPQ----lyk 264 (652)
T PLN02903 202 NLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP---EGA------RDYLVPSRVQP---GTFYALPQ-SPQ----LFK 264 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC---CCC------cccEEeeecCC---CcccccCC-CHH----HHH
Confidence 467899999999999986 9999999999985432 111 12222222111 24555553 322 344
Q ss_pred HhH-hcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 96 KWI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 96 ~~i-~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
+.+ .+. + =|+||+++|||+|... .. |.-||+|.|++..+.+.++....+-++...++..+.
T Consensus 265 Q~Lm~~G--~-~RvFqIa~~FR~E~~~-t~--RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~~ 326 (652)
T PLN02903 265 QMLMVSG--F-DRYYQIARCFRDEDLR-AD--RQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEIK 326 (652)
T ss_pred HHHHhcc--C-CcEEEEehhhccCCCC-CC--cccceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 433 232 2 3899999999999543 34 889999999999999877776665566666666553
No 89
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=98.03 E-value=3.6e-05 Score=81.54 Aligned_cols=122 Identities=15% Similarity=0.091 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|.+.. .|- +..-|. ++.. .++.++.||-..+-. .++
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA----~a~PF~-T~~n--~~d~~lYLriSpEL~----lKr 315 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGA----NARPFI-THHN--DLDLDLYLRIATELP----LKM 315 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Ccc----cceeEE-eccc--CCCcceEEeecHHHH----HHH
Confidence 467899999999999999999999999998752 121 111122 2211 135778888655432 333
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
.+.+. + =|+|++|++||+|...++ ..-||+|.|.+.++++..+..+.+-+++..++..
T Consensus 316 LlvgG--~-~rVfeIgp~FRnE~~~~r---HnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v~~~ 373 (585)
T PTZ00417 316 LIVGG--I-DKVYEIGKVFRNEGIDNT---HNPEFTSCEFYWAYADFYDLIKWSEDFFSQLVMH 373 (585)
T ss_pred HHHhC--C-CCEEEEcccccCCCCCCC---ccceeeeeeeeeecCCHHHHHHHHHHHHHHHHHH
Confidence 33222 2 389999999999965433 6679999999999988777665544444444443
No 90
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=98.02 E-value=2.7e-05 Score=82.83 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEec-CCCCCCCcEEEcCCCChhHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~-g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
-++++..|...+|+.|.+.||.+|.||+|.+..- + | +.+ |.+..+ .. +..++|+ .|-. +|.
T Consensus 140 ~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~---e-g-----a~~-f~v~~~~~~---~~~~~L~-qSpq----l~k 201 (588)
T PRK00476 140 NLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP---E-G-----ARD-YLVPSRVHP---GKFYALP-QSPQ----LFK 201 (588)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC---C-C-----Ccc-ceecccccC---CceeecC-CCHH----HHH
Confidence 4578899999999999999999999999986431 1 1 111 322211 00 2455554 3322 333
Q ss_pred Hh-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 96 ~~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
+. +.+- + =|+||+|+|||+|.. ... |.-||+|.|++.++.+.++....+-++...+++.+.
T Consensus 202 q~l~~~g--~-~rvfqi~~~FR~E~~-~~~--r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~ 263 (588)
T PRK00476 202 QLLMVAG--F-DRYYQIARCFRDEDL-RAD--RQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVL 263 (588)
T ss_pred HHHHhcc--c-CceEEEeceeecCCC-CCC--cCcccccceeeecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 33 2221 2 389999999999953 334 777999999999999887776665556666666553
No 91
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=98.01 E-value=4e-05 Score=81.74 Aligned_cols=123 Identities=14% Similarity=0.118 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+|+.|...||.+|.||+|.+.. .| =..+.|.+.+.. ++.++.||=..+ +|.
T Consensus 231 ~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~-----~g----a~a~pF~t~~n~---~~~~~yL~~SPE-----Lyl 293 (659)
T PTZ00385 231 ETIKKRHVMLQALRDYFNERNFVEVETPVLHTVA-----SG----ANAKSFVTHHNA---NAMDLFLRVAPE-----LHL 293 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC-----CC----CCccceEeeccc---CCCCEEecCChH-----HHH
Confidence 3567899999999999999999999999996431 11 112334333321 136677876655 333
Q ss_pred H-hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 96 K-WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 96 ~-~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
+ .+.+. + =|+||+|++||+|...++ +.-||+|.|.+.++.+..+..+.+-+++..++..+
T Consensus 294 KrLivgG--~-erVyeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~~~v 354 (659)
T PTZ00385 294 KQCIVGG--M-ERIYEIGKVFRNEDADRS---HNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLAMRV 354 (659)
T ss_pred HHHhhcc--c-CCEEEEeceecCCCCCCC---ccccccceeeeeecCCHHHHHHHHHHHHHHHHHHh
Confidence 3 23222 2 389999999999965432 77899999999999987776655555555555544
No 92
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.99 E-value=5.2e-05 Score=78.18 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+|+.|.+.||.+|.||+|.... ..|+. +.|.+.--| .++.|+-..+ ++.
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~----~eg~~-----~~f~~~~~~-----~~~~L~~Spq-----l~~ 194 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASG----TEGGA-----ELFPIDYFE-----KEAYLAQSPQ-----LYK 194 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccC----CCCCc-----ceEeEEecC-----CceEecCCHH-----HHH
Confidence 3568899999999999999999999999995421 11222 244443332 6788876544 233
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCccc-chhheeccceeecCC-hhhHHHHHHHHHHHHHH
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIR-SREFLWQEGHTAFAT-KSEADDEILELYRRIYE 159 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR-~REF~q~e~~~~~~~-~~~a~~eil~~~~~i~~ 159 (401)
+.+..- .+ =|+||+|++||+|...+ . | .-||+|.|++.++.+ .++....+-++...++.
T Consensus 195 q~l~~~-g~-~rVf~i~~~FR~E~~~t-~--rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~ 255 (437)
T PRK05159 195 QMMVGA-GF-ERVFEIGPVFRAEEHNT-S--RHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYE 255 (437)
T ss_pred HHHHhc-CC-CcEEEEeceeeCCCCCC-c--ccchhhheeeeeeeecccHHHHHHHHHHHHHHHHH
Confidence 333221 22 38999999999995532 2 3 469999999999987 66665553333334443
No 93
>PLN02502 lysyl-tRNA synthetase
Probab=97.97 E-value=5.1e-05 Score=80.07 Aligned_cols=123 Identities=13% Similarity=0.106 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| =...-|...+. .++.++.||=..+-. .+.
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gG----A~a~pF~t~~n---~~~~~~yL~~Spel~----lK~ 291 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GG----AAARPFVTHHN---DLNMDLYLRIATELH----LKR 291 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CC----ccccceeeecc---cCCcceeeecCHHHH----HHH
Confidence 457899999999999999999999999997532 12 11122322221 235778887665521 222
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
.+.+- + =|+|++|++||+|...+ -+.-||+|.|++.++++..+....+-++...++..+
T Consensus 292 L~v~g--~-~rVfeIg~~FRnE~~~~---rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i~~~v 350 (553)
T PLN02502 292 LVVGG--F-ERVYEIGRQFRNEGIST---RHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKEL 350 (553)
T ss_pred HHHhc--c-CCEEEEcCeeeCCCCCC---ccccceeehhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 23221 2 38999999999996544 378899999999999887776655444444444443
No 94
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.96 E-value=5.1e-05 Score=79.30 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+|+.|...||.+|.||+|.+.. .| =.-+.|.+.+. .++.++.||-..+- +.+
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gg----a~a~pF~t~~~---~~~~~~yLriSpEL----ylK 233 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GG----ANARPFITHHN---ALDMDLYLRIAPEL----YLK 233 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CC----ccceeEEeecc---cCCCceEEecCHHH----HHH
Confidence 3567889999999999999999999999997532 12 11123433321 12467888876542 223
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
+.+.+- + =|+|++|++||+|-..++ ..-||+|.|++.++++..+....+-++...++..+
T Consensus 234 rlivgG--~-~rVfeIg~~FRnE~~~~r---H~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 234 RLIVGG--F-EKVYEIGRNFRNEGVDTT---HNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred HHHhCC--C-CceEEEecceecCCCCCc---ccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 333332 2 389999999999965443 77799999999999887766555444444444433
No 95
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=97.95 E-value=5.5e-05 Score=72.10 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccCh-hhhhh---hccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYP 92 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~-~l~~k---~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~ 92 (401)
.......+.+.+++.|...||+++..|.+++. ..|.+ ...|-.--..+.|++..... ..++..+||...++...+
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~-~~~~~~vLRThts~~~~~ 93 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYS-AEEDYSVLRTHTSPGQLR 93 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSB-CECSSEEE-SSTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeecccc-ccchhhhhhhhhhHHHHH
Confidence 34457788999999999999999999999653 33432 12222111224565533221 013789999987776665
Q ss_pred HHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 93 YFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 93 ~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
++ .+++..|+|++.+|.|||.|..... .+.+|+|.|+-.++.+-. -.++..+...+++.+
T Consensus 94 ~l----~~~~~~p~kif~iG~VyR~D~~D~t---h~~~f~Qleg~~~~~~~~--f~~Lk~~l~~l~~~l 153 (247)
T PF01409_consen 94 TL----NKHRPPPIKIFEIGKVYRRDEIDAT---HLPEFHQLEGLVVDKNVT--FEDLKGTLEELLKEL 153 (247)
T ss_dssp HH----TTTSHSSEEEEEEEEEESSSCSBSS---BESEEEEEEEEEEETTE---HHHHHHHHHHHHHHH
T ss_pred HH----HHhcCCCeEEEecCceEecCCcccc---cCccceeEeeEEEecccc--hhHHHHHHHHHHHHH
Confidence 55 5667899999999999999954333 678999999988775422 233566667777766
No 96
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.93 E-value=0.0001 Score=72.85 Aligned_cols=131 Identities=13% Similarity=0.091 Sum_probs=88.7
Q ss_pred ecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhh-hh---hhccCcccccccceEEEecCCCCCCCcEEEcCCCCh
Q 015762 13 MRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (401)
Q Consensus 13 ~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l-~~---k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~ 88 (401)
+.+....-...+.+.+++.|...||+++.+|.+++... |. .-.+|-.-=..+.|++. +..+||...++
T Consensus 102 ~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~--------~~~lLRThTSp 173 (339)
T PRK00488 102 IELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYID--------DGLLLRTHTSP 173 (339)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEc--------CCceeeccCcH
Confidence 34445566788999999999999999999999986542 32 11222111111355562 56899988777
Q ss_pred hHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 89 ~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
...+.+++ ...|+|++..|.|||.+.... - ++.+|+|.|+-+++.+-.- +++......+++.+
T Consensus 174 ~qir~L~~-----~~~Pirif~~G~VyR~D~~Da-t--H~~~FhQleglvvd~~vtf--~dLK~~L~~fl~~~ 236 (339)
T PRK00488 174 VQIRTMEK-----QKPPIRIIAPGRVYRNDSDDA-T--HSPMFHQVEGLVVDKNISF--ADLKGTLEDFLKAF 236 (339)
T ss_pred HHHHHHHh-----cCCCeEEEEeeeEEEcCCCCc-c--cCcceeeEEEEEEeCCCCH--HHHHHHHHHHHHHH
Confidence 66665544 468999999999999994222 2 7889999999887765333 33444444555544
No 97
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=97.90 E-value=8.5e-05 Score=76.86 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecC----CCCCCCcEEEcCCCChhHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYP 92 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g----~~~l~~~l~LRPt~e~~i~~ 92 (401)
-++++..|.+.+++.|...||.+|.||+|.... ..|+ .+.|.+.... +.-.+.++.|+...+-
T Consensus 132 ~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~----~eg~-----~~~F~v~~~~~~~~~~~~~~~~~L~~Spql---- 198 (450)
T PRK03932 132 VMRIRNTLAQAIHEFFNENGFVWVDTPIITASD----CEGA-----GELFRVTTLDLDFSKDFFGKEAYLTVSGQL---- 198 (450)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCceeccC----CCCC-----CCceEeecccccccccccCCCcccccCHHH----
Confidence 468899999999999999999999999998652 1121 2456553210 0012367777765542
Q ss_pred HHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 93 YFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 93 ~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
+...+.+ .+ =|+||+++|||+|...+ . --+-||+|.|++.++.+.++....+-++...++.
T Consensus 199 -~lq~l~~--g~-~rVf~i~~~FR~E~~~t-~-rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~~~~ 259 (450)
T PRK03932 199 -YAEAYAM--AL-GKVYTFGPTFRAENSNT-R-RHLAEFWMIEPEMAFADLEDNMDLAEEMLKYVVK 259 (450)
T ss_pred -HHHHHHh--cc-CCeEEeeeccccCCCCC-c-cccccccccceEEeccCHHHHHHHHHHHHHHHHH
Confidence 2222222 22 38999999999995322 2 1346999999999998876655443333334433
No 98
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=97.88 E-value=8.3e-05 Score=80.13 Aligned_cols=120 Identities=16% Similarity=0.119 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|.+.||.+|.||+|....- +.+ .+.+....... +.-++|+- |.. +|.+
T Consensus 155 ~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~---eGA------r~~~~p~~~~~---~~~y~L~q-SPQ----lykq 217 (706)
T PRK12820 155 HLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP---EGA------RDYLVPSRIHP---KEFYALPQ-SPQ----LFKQ 217 (706)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC---CCC------cceEEeeecCC---CcceecCC-CHH----HHHH
Confidence 5678999999999999999999999999986331 111 11111111111 13455543 322 3444
Q ss_pred hHh-cCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 97 WIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 97 ~i~-s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
.+. +- + =|+||+++|||.|...+ . |.-||+|.|++.++.+.++....+-++...++.
T Consensus 218 ~lm~~G--~-~rvfqI~~~FR~E~~~t-~--r~pEFT~LE~E~af~d~~dvm~l~E~li~~v~~ 275 (706)
T PRK12820 218 LLMIAG--F-ERYFQLARCFRDEDLRP-N--RQPEFTQLDIEASFIDEEFIFELIEELTARMFA 275 (706)
T ss_pred HHHhcc--C-CcEEEEechhcCCCCCC-C--cCccccccceeeccCCHHHHHHHHHHHHHHHHH
Confidence 432 21 2 38999999999996533 3 889999999999999888776665555666664
No 99
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.86 E-value=8.3e-05 Score=76.96 Aligned_cols=125 Identities=17% Similarity=0.150 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecC----CCCCCCcEEEcCCCChhHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG----ESDLEVPIAIRPTSETVMYP 92 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g----~~~l~~~l~LRPt~e~~i~~ 92 (401)
-++++..|.+.+++.|...||.+|.||+|....- + | +.++|.+.... ..-.+++..|+-..+
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~---e-g-----~~~~F~v~~~~~~~~~~~~~~~~yL~~Spq----- 200 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC---E-G-----AGELFRVSTDGIDFSQDFFGKEAYLTVSGQ----- 200 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC---C-C-----CCCceEecccccccchhccCCccccccCHH-----
Confidence 3678999999999999999999999999986431 1 1 12345443100 000135566665432
Q ss_pred HHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 93 YFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 93 ~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
++.+.+.+ .+ =|+||++++||.|...+.= -+-||+|.|++.++++.++....+-++...++..
T Consensus 201 l~lq~l~~--g~-~rVf~i~~~FR~E~~~t~r--Hl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~ 263 (453)
T TIGR00457 201 LYLETYAL--AL-SKVYTFGPTFRAEKSNTSR--HLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKA 263 (453)
T ss_pred HHHHHHhh--cc-cCceEeeeccccCCCCCCc--CcchhccceeeeecCCHHHHHHHHHHHHHHHHHH
Confidence 23333322 22 3899999999999653321 3369999999999988666655544444444443
No 100
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.85 E-value=0.00018 Score=69.42 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=81.8
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccc------cCCCe
Q 015762 203 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKD------LANDQ 276 (401)
Q Consensus 203 p~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE------~~~~~ 276 (401)
-.+|+|+.++. .-+.....+|++.|+++||++++-.....++...+.++...||+++|+|-+++ -..+.
T Consensus 5 RCDVLV~S~~~-----~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~ 79 (273)
T PF12745_consen 5 RCDVLVCSFGP-----SSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKP 79 (273)
T ss_pred cceEEEEeCCh-----hHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCc
Confidence 36899998873 33448999999999999999999332325999999999999999999998765 22245
Q ss_pred EEEEECCCCceeeechhhHHHHHHHHHHHH
Q 015762 277 VRAVRRDNGAKIDLPRGSLVERVKELLEEV 306 (401)
Q Consensus 277 V~v~~r~tg~k~~v~~~el~~~i~~~l~~~ 306 (401)
|.||+..+++...|+.+||+.++.+.+.+-
T Consensus 80 lKVK~l~~~~e~dv~~~eLv~~l~~ei~~r 109 (273)
T PF12745_consen 80 LKVKSLEKKKETDVDRDELVDWLQQEIRER 109 (273)
T ss_pred eEEeccCCCcccccCHHHHHHHHHHHHHhh
Confidence 999999999999999999999998887653
No 101
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.84 E-value=0.00012 Score=76.69 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+|+.|...||.+|.||+|.+. ..|- ...-|...+. .++.++.||=..+- +.+
T Consensus 182 ~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~-----~gGa----~a~pF~t~~~---~~~~~~yL~~SpEL----ylK 245 (505)
T PRK12445 182 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVI-----PGGA----SARPFITHHN---ALDLDMYLRIAPEL----YLK 245 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec-----CCCC----cccceecccc---cCCcceeeecCHHH----HHH
Confidence 357789999999999999999999999999653 1121 1112211111 12466777765442 223
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
+.+.+. + =|+|++|++||+|.. +. -+.-||+|.|++.++++..+....+-++...++..
T Consensus 246 rlivgG--~-~rVfeIg~~FRnE~~-~~--rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l~~~ 304 (505)
T PRK12445 246 RLVVGG--F-ERVFEINRNFRNEGI-SV--RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQE 304 (505)
T ss_pred HHHhcc--C-CcEEEEehhccCCCC-CC--CcCcccceeeeeeecCCHHHHHHHHHHHHHHHHHH
Confidence 333322 2 389999999999964 22 27789999999999988777655544444444443
No 102
>PLN02850 aspartate-tRNA ligase
Probab=97.79 E-value=0.00012 Score=77.09 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|..... + |+ -+.|.+..-| +.++|+-..+ ++.+
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~---e-gg-----a~~F~v~yf~-----~~~~L~qSpq-----l~kq 284 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS---E-GG-----SAVFRLDYKG-----QPACLAQSPQ-----LHKQ 284 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC---c-cc-----cceeeeccCC-----cceecCCCHH-----HHHH
Confidence 3578889999999999999999999999965321 1 11 2356665443 6788875433 3333
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecC-ChhhHHHHHHHHHHHHHH
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEILELYRRIYE 159 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~eil~~~~~i~~ 159 (401)
. +.+ ++ =|+|++|+|||.|.+.+.= -+-||+|.|++..+. +..+....+-++...++.
T Consensus 285 ~li~~--g~-~rVfeIgp~FRaE~s~t~R--Hl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~ 344 (530)
T PLN02850 285 MAICG--DF-RRVFEIGPVFRAEDSFTHR--HLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFD 344 (530)
T ss_pred HHHHh--cC-CceEEEecccccCCCCCCc--cchhhccchhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 3 222 23 2899999999999642321 346999999996443 344443333333344443
No 103
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00035 Score=70.95 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|...+++.|.+.||.+|.||++..... +. +.|+|.++--+ .+..|-=. + .+++.
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~---EG------g~elF~v~yf~-----~~a~LtqS--~---QLyke 193 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASAT---EG------GGELFKVDYFD-----KEAYLTQS--P---QLYKE 193 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCC---CC------CceeEEEeecC-----cceEEecC--H---HHHHH
Confidence 5688999999999999999999999999987653 22 24777776554 23332211 1 12222
Q ss_pred hH-hcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHH
Q 015762 97 WI-RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADD 148 (401)
Q Consensus 97 ~i-~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~ 148 (401)
.. .+. =|+|.+|++||-|.+.|+= -+-||+|.|.+.++++..+...
T Consensus 194 ~~~~al----~rVf~igP~FRAE~s~T~R--HL~EF~~ld~Emaf~~~~d~m~ 240 (435)
T COG0017 194 ALAAAL----ERVFTIGPTFRAEKSNTRR--HLSEFWMLDPEMAFADLNDVMD 240 (435)
T ss_pred HHHHHh----CceEEecCceecCCCCCcc--hhhhHheecceeccCcHHHHHH
Confidence 22 121 2899999999999876663 3889999999999999655443
No 104
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=97.71 E-value=0.00027 Score=69.16 Aligned_cols=130 Identities=9% Similarity=0.040 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccCh-hhhhhh---ccCcccccccceEEEecCCCCCCCcEEEcCCCChhHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKE---KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~-~l~~k~---~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (401)
.+......+.+.+++.|...||+++.+|.|++. ..|.+- .+|-.--..+.+.+. +..+||++..+++.
T Consensus 69 g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~--------d~~vLRtsl~p~ll 140 (294)
T TIGR00468 69 GSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK--------DRLLLRTHTTAVQL 140 (294)
T ss_pred CCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec--------CCcceecccHHHHH
Confidence 344556778888999999999999999999887 344321 111000000234443 45789999999887
Q ss_pred HHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 92 ~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
..++.... .|+|++++|+|||.+.. ... ++.||+|.++-.++... .-.++..+...++..++
T Consensus 141 ~~l~~N~~----~pirlFEiGrVfr~d~~-d~~--~~pef~ql~gl~~~~~~--~f~dLKg~le~ll~~l~ 202 (294)
T TIGR00468 141 RTMEENEK----PPIRIFSPGRVFRNDTV-DAT--HLPEFHQVEGLVIDKNV--SFTNLKGFLEEFLKKMF 202 (294)
T ss_pred HHHHhcCC----CCceEEEecceEEcCCC-CCc--cCChhhEEEEEEECCCC--CHHHHHHHHHHHHHHhC
Confidence 77765432 79999999999999842 222 34599999988765221 12335566667777664
No 105
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.69 E-value=0.00015 Score=82.36 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|.+.||.||.||+|.+.+ .| =+-+.|.+.... ++.++.||-..+- +.++
T Consensus 769 ~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~-----gG----a~a~pF~t~~~~---~~~~~yLriSPEL----ylKr 832 (1094)
T PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQVH-----GG----ANARPFVTHINA---YDMDLYLRIAPEL----YLKR 832 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC-----CC----cccceeEeeecC---CCccchhhcChHH----HHHH
Confidence 357889999999999999999999999997422 12 112334433221 2456777765542 2233
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
-+.+- + =|+|++|++||+|...++ ..-||+|.|++.++.+.++..+.+-++...+++.+
T Consensus 833 LivgG--~-erVFEIg~~FRnE~~~~r---HnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~~~v 891 (1094)
T PRK02983 833 LCVGG--V-ERVFELGRNFRNEGVDAT---HNPEFTLLEAYQAHADYDTMRDLTRELIQNAAQAA 891 (1094)
T ss_pred HHhcc--c-CceEEEcceecCCCCCCC---ccccccchhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 33221 2 389999999999965433 67799999999999887776655445555555544
No 106
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00039 Score=71.92 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEE---ecCCCCCCCcEEEcCCCChhHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVT---KSGESDLEVPIAIRPTSETVMYPY 93 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~---~~g~~~l~~~l~LRPt~e~~i~~~ 93 (401)
-..++.++...+|+.+...||.+|+||+|....= +|=.+ |-|- +.| +-||| |-|-. .
T Consensus 140 ~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTP--------EGARD--fLVPSRv~~G-----~FYAL-PQSPQ----l 199 (585)
T COG0173 140 NLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTP--------EGARD--FLVPSRVHPG-----KFYAL-PQSPQ----L 199 (585)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEeecCccccCCC--------ccccc--cccccccCCC-----ceeec-CCCHH----H
Confidence 4578899999999999999999999999864321 11111 2222 222 44554 54433 4
Q ss_pred HHHhHh-cCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhCcc
Q 015762 94 FSKWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAV 164 (401)
Q Consensus 94 ~~~~i~-s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~~i 164 (401)
|+..+. |--| |+|||+.|||+| -...- |.-||+|.|+++.+.+.++..+-+-.+...+|+...++
T Consensus 200 fKQLLMvsGfd---RYyQIarCFRDE-DlRaD--RQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i 265 (585)
T COG0173 200 FKQLLMVAGFD---RYYQIARCFRDE-DLRAD--RQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGI 265 (585)
T ss_pred HHHHHHHhccc---ceeeeeeeeccc-ccccc--cCCcceeEeEEeecCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 554432 2223 899999999999 43446 88999999999999998887766667777888776533
No 107
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.64 E-value=0.00025 Score=74.93 Aligned_cols=124 Identities=17% Similarity=0.112 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEec-------CCCC--------------
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-------GESD-------------- 75 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~-------g~~~-------------- 75 (401)
-++++..|...+++.|...||.+|.||+|...+- + | +.|+|.|+.. ++..
T Consensus 225 i~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~---E-----G-A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~ 295 (565)
T PLN02603 225 VARVRNALAYATHKFFQENGFVWVSSPIITASDC---E-----G-AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDW 295 (565)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeecccCC---C-----c-cccCceeeeccccccccccccccccccCccccccc
Confidence 3588999999999999999999999999986431 1 1 2366666531 1000
Q ss_pred ----CCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHH
Q 015762 76 ----LEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEIL 151 (401)
Q Consensus 76 ----l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil 151 (401)
.+++..|.-.+ . ++...... .| =++|++|++||.|.+.+.= -+-||+|.|++.++++-++....+-
T Consensus 296 ~~dyF~~~~~LtvS~-Q----L~~E~~~~--~l-~rVy~igp~FRaE~s~T~R--HL~EF~mlE~E~af~dl~d~m~~~E 365 (565)
T PLN02603 296 SQDFFGKPAFLTVSG-Q----LNGETYAT--AL-SDVYTFGPTFRAENSNTSR--HLAEFWMIEPELAFADLNDDMACAT 365 (565)
T ss_pred chhhhCcceeeccCc-h----HHHHHHHh--cc-cceEEEecceeCCCCCCcc--ccccceeeeeeeecCCHHHHHHHHH
Confidence 00112222211 1 11111111 22 3789999999999664431 3479999999999987665443333
Q ss_pred HHHHHHHH
Q 015762 152 ELYRRIYE 159 (401)
Q Consensus 152 ~~~~~i~~ 159 (401)
++...+++
T Consensus 366 ~~l~~~~~ 373 (565)
T PLN02603 366 AYLQYVVK 373 (565)
T ss_pred HHHHHHHH
Confidence 33333333
No 108
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=97.60 E-value=0.0012 Score=61.69 Aligned_cols=121 Identities=11% Similarity=0.093 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChh-hhhhhccCcccccc--------cceEEEecCCCCCCCcEEEcCCCChhHH
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQKEKDHIEGFAP--------EVAWVTKSGESDLEVPIAIRPTSETVMY 91 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~-l~~k~~gh~~~f~~--------e~y~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (401)
.+.+.+.+++.+...||+|+.|+.|.+.+ .+.+ .+ +.+ +.+.+.. ++ .-+|||+..+++.
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~-~~----~~~~~~~~~~~~~v~l~N----P~--~~~LR~sLlp~LL 71 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDA-LN----IPQDHPARDMQDTFYIND----PA--RLLLRTHTSAVQA 71 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhh-cC----CCCCCcccccCceEEECC----Cc--eEEEeccCcHHHH
Confidence 45677889999999999999999998873 3421 11 111 1112211 11 4799999999887
Q ss_pred HHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 92 ~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
...+.. ..|+++|++|+|||.+. .... ++.||.+.++-..|.... ..++..+...+++.++
T Consensus 72 ~~l~~N-----~~~~~lFEiG~Vf~~~~-~~~~--~~~E~~~l~~~~~g~~~d--f~dlkg~ve~ll~~l~ 132 (218)
T cd00496 72 RALAKL-----KPPIRIFSIGRVYRNDE-IDAT--HLPEFHQIEGLVVDKGLT--FADLKGTLEEFAKELF 132 (218)
T ss_pred HHHHhc-----CCCeeEEEEcCeEECCC-CCCC--cCCccEEEEEEEECCCCC--HHHHHHHHHHHHHHhc
Confidence 666554 57999999999999983 2323 445999999988774211 2335666777776664
No 109
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.55 E-value=0.00059 Score=72.22 Aligned_cols=124 Identities=15% Similarity=0.063 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCC----------------------
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES---------------------- 74 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~---------------------- 74 (401)
-++++..|...+++.|...||.+|.||+|...+- | | +.|||.|+.....
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~---E-----G-a~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~ 284 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSDC---E-----G-GGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKRED 284 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCC---C-----C-CcceEEeeecccccccccccccccccccccccccc
Confidence 5689999999999999999999999999976542 1 1 2467776422000
Q ss_pred ------------------------------------CCCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecC
Q 015762 75 ------------------------------------DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWE 118 (401)
Q Consensus 75 ------------------------------------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E 118 (401)
-.+.+..|.-.+. ++...+.. .+ =|+|+++++||.|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~Q-----LylE~~~~--g~-~rVf~i~p~FRaE 356 (586)
T PTZ00425 285 ILNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQ-----LSLENLCS--SM-GDVYTFGPTFRAE 356 (586)
T ss_pred ccccccccccccccccccccccccccccccccccccccCcceEEEcCch-----HHHHHHHh--cc-CCEEEEeceEeCC
Confidence 0001222222111 22222221 12 3899999999999
Q ss_pred CCCCCCcccc-hhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 119 FSNPTPFIRS-REFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 119 ~~~~~gllR~-REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
.+.+. |- -||+|.|++.++.+.++....+-+++..+++.
T Consensus 357 ~s~t~---RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~ 396 (586)
T PTZ00425 357 NSHTS---RHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGY 396 (586)
T ss_pred CCCCC---CCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 64333 44 69999999999988666544333444444443
No 110
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.52 E-value=0.00056 Score=72.41 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChh
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPT 49 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~ 49 (401)
-++++..|...+++.|.+.||.+|.||+|...+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 468899999999999999999999999998655
No 111
>PLN02532 asparagine-tRNA synthetase
Probab=97.43 E-value=0.00075 Score=71.92 Aligned_cols=33 Identities=3% Similarity=0.079 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChh
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPT 49 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~ 49 (401)
-++++..|...+++.|...||.+|.||+|...+
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 468999999999999999999999999997654
No 112
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.38 E-value=0.00078 Score=71.15 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|...+|+.|...||.+|.||+|..... -|+.+ +|.+..-| ..++|+-..+ +++.
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~----egga~-----~F~v~yf~-----~~~~L~qSpq-----l~kq 272 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS----EGGAN-----VFKLEYFN-----RFAYLAQSPQ-----LYKQ 272 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----Ccccc-----ccccccCC-----CCeecCCCHH-----HHHH
Confidence 4678889999999999999999999999987541 12222 34443222 5677765433 3444
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeec-CChhhHHHHHHHHHHHHHHH
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF-ATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~-~~~~~a~~eil~~~~~i~~~ 160 (401)
.+... ++ =|+||+|+|||.|.+.+.= -.-||+|.|++..+ .+..+....+-++...++..
T Consensus 273 ~li~~-g~-~rVfeI~p~FRaE~s~T~R--Hl~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~ 333 (550)
T PTZ00401 273 MVLQG-DV-PRVFEVGPVFRSENSNTHR--HLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFER 333 (550)
T ss_pred HHHhc-CC-CCEEEEeCeEeCCCCCCCC--CccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHH
Confidence 43321 22 3899999999999654331 34599999998654 44455544433444444443
No 113
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=97.04 E-value=0.0058 Score=63.27 Aligned_cols=140 Identities=11% Similarity=0.068 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEec-cCCccChhhhh-----hhccCcccccccceEEEecCC----------------
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCY-FPLFVSPTVLQ-----KEKDHIEGFAPEVAWVTKSGE---------------- 73 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~-tP~l~~~~l~~-----k~~gh~~~f~~e~y~~~~~g~---------------- 73 (401)
....-...+.+.++++|...||+++. .|.+++ +.|. --..|-.-=..+.|++.+...
T Consensus 218 G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves-~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~H 296 (492)
T PLN02853 218 GHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVES-SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVH 296 (492)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEecCCCCeec-hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHH
Confidence 34455677889999999999999994 566543 3331 122222111124566652110
Q ss_pred ---------------CCCCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheecccee
Q 015762 74 ---------------SDLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHT 138 (401)
Q Consensus 74 ---------------~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~ 138 (401)
.+..+.++||.-.|+.-.+++....+ ....|+|++.+|.|||+|.-... .+-||+|.|+-+
T Consensus 297 e~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~-~~~~p~k~fsigrVfR~d~iDat---H~~eFhQ~EG~v 372 (492)
T PLN02853 297 ESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQ-KGFKPKRYFSIDRVFRNEAVDRT---HLAEFHQVEGLV 372 (492)
T ss_pred hcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhc-cCCCCcEEEeccceecCCCCCcc---cCccceeEEEEE
Confidence 00124688887555555666665432 22479999999999999953222 678999999998
Q ss_pred ecCChhhHHHHHHHHHHHHHHHhC
Q 015762 139 AFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 139 ~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
++.+ -....++.+...+|+.+|
T Consensus 373 vd~~--~t~~~L~g~l~~f~~~lg 394 (492)
T PLN02853 373 CDRG--LTLGDLIGVLEDFFSRLG 394 (492)
T ss_pred EeCC--CCHHHHHHHHHHHHHHcC
Confidence 7644 223346677778888775
No 114
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0053 Score=60.63 Aligned_cols=136 Identities=14% Similarity=0.118 Sum_probs=88.5
Q ss_pred EecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhh-----hhhccCcccccccceEEEecCCCCCCCcEEEcCCC
Q 015762 12 IMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVL-----QKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (401)
Q Consensus 12 ~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~-----~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~ 86 (401)
...|.+......+.+.++++|...||+++..|.++. +.| ..-..|-.-=-.+.|++++.. +.+.||=-.
T Consensus 104 ~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~-----~~~lLRTHT 177 (335)
T COG0016 104 RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDR-----EKLLLRTHT 177 (335)
T ss_pred cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCC-----CceeecccC
Confidence 455567777888999999999999999999996553 333 112223211112467776532 257888544
Q ss_pred ChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 87 e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
++.-.+++++. ..-|+|++..|.|||+|.-... .+-+|+|.|+-++..+-- -+.+..++..+++.++
T Consensus 178 s~vq~R~l~~~----~~~P~k~~~~grvyR~D~~DaT---Hs~~FhQiEGlvvd~~~s--~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 178 SPVQARTLAEN----AKIPIKIFSPGRVYRNDTVDAT---HSPEFHQIEGLVVDKNIS--FADLKGTLEEFAKKFF 244 (335)
T ss_pred cHhhHHHHHhC----CCCCceEecccceecCCCCCcc---cchheeeeEEEEEeCCcc--HHHHHHHHHHHHHHhc
Confidence 44435555443 2339999999999999954333 678999999977654432 3345566666666664
No 115
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.69 E-value=0.0041 Score=63.65 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=56.3
Q ss_pred cEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHH
Q 015762 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIY 158 (401)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~ 158 (401)
.+.||...++.....++. +..+..+|+|++.+|.|||.|...-.- ++++|+|.++-+++.+-- -+++..+...++
T Consensus 182 ~~lLRTHTTpgqirtL~~-L~~~~~~PiRIFsIGRVfRrD~~~DaT--Hl~eFhQlEGLVVdedVS--f~DLKgvLe~LL 256 (533)
T TIGR00470 182 TLTLRSHMTSGWFITLSS-IIDKRKLPLKLFSIDRCFRREQREDRS--HLMTYHSASCVVVDEEVS--VDDGKAVAEGLL 256 (533)
T ss_pred CcccccCChhHHHHHHHH-HhhcCCCCeEEEeeeeEEecCCCCCCc--cCceeeeEEEEEECCCCC--HHHHHHHHHHHH
Confidence 688888777765555543 233567999999999999999421222 789999999998776533 334666777777
Q ss_pred HHhC
Q 015762 159 EEFL 162 (401)
Q Consensus 159 ~~l~ 162 (401)
+.+|
T Consensus 257 r~LG 260 (533)
T TIGR00470 257 AQFG 260 (533)
T ss_pred HHhC
Confidence 7775
No 116
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0099 Score=60.78 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHH-HHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 17 AISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~-~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
-.+++..+...+|+-| .+.||.++.||+|-. +.-|. +.| |.|--+.. -+. ++--|-|-.. |+
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFk-----rTPgG----A~E-FvVPtr~~--~g~-FYaLpQSPQQ----fK 239 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFK-----RTPGG----ARE-FVVPTRTP--RGK-FYALPQSPQQ----FK 239 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhc-----cCCCc----cce-eecccCCC--CCc-eeecCCCHHH----HH
Confidence 3577888888899888 578999999999753 22221 222 22222110 012 3333444332 33
Q ss_pred HhHh-cCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 96 KWIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 96 ~~i~-s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
..+. |--| |+||++.|||+|-. ..- |.-||+|.|++..+.+.++...-+-++....+..
T Consensus 240 QlLMvsGid---rYyQiARCfRDEdl-R~D--RQPEFTQvD~EMsF~~~~dim~liEdll~~~ws~ 299 (628)
T KOG2411|consen 240 QLLMVSGID---RYYQIARCFRDEDL-RAD--RQPEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSE 299 (628)
T ss_pred HHHHHhchh---hHHhHHhhhccccc-Ccc--cCCcceeeeeEEeccCHHHHHHHHHHHHHHhchh
Confidence 3332 2112 78999999999942 224 8899999999999998766554444444444443
No 117
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.014 Score=60.08 Aligned_cols=122 Identities=18% Similarity=0.184 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-+..+-+|++.+|+.+...||-||.||+|.+- .| |=+..-| +|+.. -|+-++.||=..|- +.++
T Consensus 179 ~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~G---GA~ArPF-~ThhN--ald~dlyLRIApEL----yLKR 242 (502)
T COG1190 179 TFIKRSKIIRAIREFLDDRGFLEVETPMLQPI------PG---GAAARPF-ITHHN--ALDMDLYLRIAPEL----YLKR 242 (502)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEecccccccc------CC---Ccccccc-eeeec--ccCCceEEeeccHH----HHHH
Confidence 35677889999999999999999999999763 22 1112223 23322 24678999977663 4555
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
.+-.- + =|+|++|.+||+|--..+ -.=||++.|.+.+.+|..+..+-.-++...+..+
T Consensus 243 liVGG--~-erVfEIgr~FRNEGid~t---HNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~ 300 (502)
T COG1190 243 LIVGG--F-ERVFEIGRNFRNEGIDTT---HNPEFTMLEFYQAYADYEDLMDLTEELIKELAKE 300 (502)
T ss_pred HHhcC--c-hhheeeccccccCCCccc---cCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55542 2 399999999999943222 3349999999998877666443333333333333
No 118
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.011 Score=60.01 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-+.++.+|++++|+.+...||-||+||++.-- +| |=..--| +|+.. +|+-++.||=.-|- +.+.
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~i------aG---GA~AkPF-IT~hn--dldm~LylRiAPEL----~lK~ 287 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNMI------AG---GATAKPF-ITHHN--DLDMDLYLRIAPEL----YLKM 287 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhccc------cC---ccccCce-eeccc--ccCcceeeeechHH----HHHH
Confidence 46788999999999999999999999998642 22 1111112 45443 35677888865542 2333
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhH
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA 146 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a 146 (401)
.+-+-- =|+|++|..||+|--. +--.-||+-+|++.+.++..+.
T Consensus 288 LvVGGl---drVYEIGr~FRNEGID---lTHNPEFTTcEfY~AYady~dl 331 (560)
T KOG1885|consen 288 LVVGGL---DRVYEIGRQFRNEGID---LTHNPEFTTCEFYMAYADYEDL 331 (560)
T ss_pred HHhccH---HHHHHHHHHhhhcCcc---cccCCCcchHHHHHHHhhHHHH
Confidence 333322 3899999999999432 2245689999998877765543
No 119
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.024 Score=56.66 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=75.3
Q ss_pred chHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCC----ChhH
Q 015762 15 PWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS----ETVM 90 (401)
Q Consensus 15 P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~----e~~i 90 (401)
..-++++..+.....+.|...+|..|.||++-..+- +| +.|||.|+-.-+ -...+.=||+. ...+
T Consensus 129 ~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC--------EG-aGE~F~vtt~~d--~~~~fFg~p~fLTVSgQLh 197 (446)
T KOG0554|consen 129 GAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC--------EG-AGEVFQVTTLTD--YSKDFFGRPAFLTVSGQLH 197 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC--------CC-CcceEEEEecCc--ccccccCCceEEEEeceeh
Confidence 346789999999999999999999999999987653 12 248888875321 01233334432 2333
Q ss_pred HHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCCh
Q 015762 91 YPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK 143 (401)
Q Consensus 91 ~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~ 143 (401)
...++--+ =+.|-+|+.||.|.+.+.- -+-||+|.|++.+|++.
T Consensus 198 lE~~a~~L-------srvyTfgP~FRAEnS~tsR--HLAEFwMlEaE~AF~~s 241 (446)
T KOG0554|consen 198 LEAMACAL-------SRVYTFGPTFRAENSHTSR--HLAEFWMLEAELAFAES 241 (446)
T ss_pred HHHHHhhh-------cceEeeccceecccCCchh--HHhhhhhhhhHHHHHHH
Confidence 32232222 3789999999999764443 57899999999999874
No 120
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.015 Score=58.10 Aligned_cols=121 Identities=20% Similarity=0.195 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHh
Q 015762 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (401)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (401)
++|..-|...+|+.+...||.+|.||-|+..+- +. +..+|.+.--++ .--++=.|- +++..
T Consensus 228 Friq~gvc~~FRe~L~~kgF~EIhTpKli~asS---EG------GanvF~v~Yfk~---~A~LAQSPQ-------LyKQM 288 (533)
T KOG0556|consen 228 FRIQAGVCFAFREYLRSKGFVEIHTPKLIGASS---EG------GANVFRVSYFKQ---KAYLAQSPQ-------LYKQM 288 (533)
T ss_pred eehHHHHHHHHHHHHHhcCcceecccccccccC---CC------CceeEEEEeccC---cchhhcChH-------HHHHH
Confidence 345566888999999999999999999986542 11 346788776543 122222221 33333
Q ss_pred HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCCh-hhHHHHHHHHHHHHHHHh
Q 015762 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATK-SEADDEILELYRRIYEEF 161 (401)
Q Consensus 98 i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~-~~a~~eil~~~~~i~~~l 161 (401)
..- .|+ =|+|.+|+|||.|-+.+.- -+-||.-.|++.++... .+....+-+++..||+.+
T Consensus 289 aI~-gdf-~rVyeIGpVfRAEdSnthR--hltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l 349 (533)
T KOG0556|consen 289 AIC-GDF-ERVYEIGPVFRAEDSNTHR--HLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGL 349 (533)
T ss_pred HHh-cch-hheeeecceeeccccchhh--hhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 132 4899999999999877664 56789877777755432 223333444455555543
No 121
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.38 E-value=0.13 Score=54.83 Aligned_cols=128 Identities=19% Similarity=0.165 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhh-hhhhccCcccccc--cceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAP--EVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l-~~k~~gh~~~f~~--e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
...+.+.+.+++.+...||+|+.|..|.+.+. +.+ -+ +.+ +...+..-=. ++.-+||++..+++....+
T Consensus 359 ~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~----~~~~~~~i~l~NPls---~e~svLRtsLlpgLL~~~~ 430 (552)
T PRK09616 359 HPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MN----LEPEEDYVEVLNPIS---EDYTVVRTSLLPSLLEFLS 430 (552)
T ss_pred ChHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hC----CCCCCCeEEEcCCCc---cchheEeccchHHHHHHHH
Confidence 34566778889999999999999999999865 532 21 222 2344432111 3677999999999988888
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH-HHHHHHHHHHHhC
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE-ILELYRRIYEEFL 162 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e-il~~~~~i~~~l~ 162 (401)
... ++..|+++|++|+||+.+..... ..+|+.+..+-+.|. .++-. +..+...++..++
T Consensus 431 ~N~--~~~~~~~lFEiG~Vf~~~~~~~~---~~~e~~~l~~~~~g~---~~df~dlKg~ve~ll~~lg 490 (552)
T PRK09616 431 NNK--HREYPQKIFEIGDVVLIDESTET---GTRTERKLAAAIAHS---EASFTEIKSVVQALLRELG 490 (552)
T ss_pred hcc--CCCCCeeEEEeeEEEecCCcccc---CcchhhEEEEEEECC---CCCHHHHHHHHHHHHHHcC
Confidence 776 34689999999999987632111 235777777766664 22222 5566667776664
No 122
>PF09181 ProRS-C_2: Prolyl-tRNA synthetase, C-terminal; InterPro: IPR015264 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found predominantly found in prolyl-tRNA synthetases from archaeal Methanococci species. It contains a zinc binding site, and adopts a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif []. ; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1NJ8_C.
Probab=95.06 E-value=0.047 Score=40.15 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=33.1
Q ss_pred HHHHHHHhcC-CCEEEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 328 WDEFVEALGQ-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 328 ~~e~~~~~~~-~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
.|+++++|.+ +|++++|+..+. .-++++++. +|+++|. | ....+.|.-+||+|
T Consensus 15 ~e~iK~~L~ekrgviLiPy~e~i-YnEEfEe~i-----dAsvLG~------------t---~y~G~kYIsiArTY 68 (68)
T PF09181_consen 15 IEKIKEILSEKRGVILIPYDESI-YNEEFEEKI-----DASVLGE------------T---EYEGKKYISIARTY 68 (68)
T ss_dssp --HHHHHCTTT-SEEEEE--GGG--SHHHHHHH-----SS-EEEE------------E---ESSSSEEEEEE-B-
T ss_pred HHHHHHHHHhcCCEEEEeCcHHH-hhHHHHhhh-----CceEeee------------E---EecCcEEEEEEeeC
Confidence 3578888865 789999997554 345688888 9999985 2 23445788899988
No 123
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.67 E-value=0.12 Score=47.32 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccc-cceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhHhc
Q 015762 22 ETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRG 100 (401)
Q Consensus 22 ~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~-e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s 100 (401)
+.+.+.+++.+...||.|+.|..|.+.+.+.. . ++.. +...+..-=. ++.=+||++.-+++....+...+
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~----~~~~~~~i~l~NPis---~e~~~lR~sLlp~LL~~~~~N~~- 73 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-F----DGGLDEAVELSNPLS---EEYSVLRTSLLPGLLDALARNLN- 73 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-c----cCCCCCeEEEcCCCc---hhHHHHHHHHHHHHHHHHHHHhc-
Confidence 45677789999999999999999998866532 2 1221 2333433111 25567999999988887777764
Q ss_pred CCCCCeEEEeeecceecC
Q 015762 101 HRDLPLKLNQWCNVVRWE 118 (401)
Q Consensus 101 ~~~LPlk~~q~~~vfR~E 118 (401)
+...|+++|++|.||..+
T Consensus 74 ~~~~~~~lFEiG~vf~~~ 91 (198)
T cd00769 74 RKNKPLRLFEIGRVFLKD 91 (198)
T ss_pred CCCCCEeEEEeEeEEecC
Confidence 346899999999999654
No 124
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=92.22 E-value=0.21 Score=49.54 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccc---------cceEEEe--------------------c
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP---------EVAWVTK--------------------S 71 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~---------e~y~~~~--------------------~ 71 (401)
..+|.+.+|.+|-..||.++-|--++-.++|.= + .-|.| +.|.+.+ +
T Consensus 214 LmKvR~eFRqiF~emGFsEMptn~yVEssFWNF--D--ALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~ 289 (483)
T KOG2784|consen 214 LMKVREEFRQIFFEMGFSEMPTNNYVESSFWNF--D--ALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQ 289 (483)
T ss_pred HHHHHHHHHHHHHHccccccccccchhhccccc--h--hhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhc
Confidence 456888999999999999999888877776621 0 01222 2343332 1
Q ss_pred CCC---------CC--CCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeec
Q 015762 72 GES---------DL--EVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (401)
Q Consensus 72 g~~---------~l--~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (401)
|+. ++ .+..+||--.|+.-+++.-+..+ ..--|-|++.|-.|||+|+-. .- -+-||+|.|+-++.
T Consensus 290 G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk-~~f~p~K~FSIDrVFRNEtvD-aT--HLAEFHQVEGviad 365 (483)
T KOG2784|consen 290 GGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAK-KGFKPAKYFSIDRVFRNETVD-AT--HLAEFHQVEGVIAD 365 (483)
T ss_pred CCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHh-CCCCcccccchhhhhhccccc-hH--HHHHHhhhceeeec
Confidence 210 01 14678886555444555544443 224699999999999999532 23 67899999998854
Q ss_pred CChhhHHHHHHHHHHHHHHHhC
Q 015762 141 ATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 141 ~~~~~a~~eil~~~~~i~~~l~ 162 (401)
.. -....++.+...+|..++
T Consensus 366 ~g--ltLgdLig~l~~ff~~lg 385 (483)
T KOG2784|consen 366 KG--LTLGDLIGILMEFFTKLG 385 (483)
T ss_pred CC--CcHHHHHHHHHHHHhccC
Confidence 33 233347788888888765
No 125
>PLN02788 phenylalanine-tRNA synthetase
Probab=89.48 E-value=3.4 Score=42.25 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHc---CCeEec--cCCccChhhhh---hhccCcccccccceEEEecCCCCCCCcEEEcCCCCh
Q 015762 17 AISIWETMQKFFDAEIKKM---KIQNCY--FPLFVSPTVLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~---G~~~i~--tP~l~~~~l~~---k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~ 88 (401)
...-...+.+.+.+.|... ||+.+. .|+.....-|. --..|-.-=..+.|++. ....||--.++
T Consensus 66 ~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~--------~~~lLRTHTSa 137 (402)
T PLN02788 66 PDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD--------AQTVLRCHTSA 137 (402)
T ss_pred CCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec--------CCccccCCCcH
Confidence 3344556777777888776 999998 45443322221 12223221122356662 45788865444
Q ss_pred hHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeec
Q 015762 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (401)
Q Consensus 89 ~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (401)
...+++++ ..| ++...|.|||+|.-.. - -+-+|+|.|+-.++
T Consensus 138 ~q~~~l~~------~~~-~~~~~g~VyRrD~iD~-t--H~p~FhQ~EG~~v~ 179 (402)
T PLN02788 138 HQAELLRA------GHT-HFLVTGDVYRRDSIDA-T--HYPVFHQMEGVRVF 179 (402)
T ss_pred HHHHHHHh------CCC-cEEEEeeEeecCCCCc-c--cCccceeEEEEEEe
Confidence 44666653 124 8999999999995322 2 66799999998876
No 126
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=89.04 E-value=0.79 Score=47.99 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=32.6
Q ss_pred cEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecC
Q 015762 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWE 118 (401)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E 118 (401)
.-+||++.++++....+..+. ++..|+++|++|+|||.+
T Consensus 183 ~svLRtSLlPGLL~tLs~Nl~-Rg~~piRLFEIGRVFr~d 221 (529)
T PRK06253 183 RLTLRSHMTSGWFITLSSLLE-KRPLPIKLFSIDRCFRRE 221 (529)
T ss_pred cCccccchHHHHHHHHHHHHh-CCCCCEEEEEEeeEEecC
Confidence 468999999988777777665 458999999999999886
No 127
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=86.82 E-value=1.8 Score=43.70 Aligned_cols=120 Identities=15% Similarity=0.088 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHh
Q 015762 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (401)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (401)
++++..+.+.+|+.+...||.+|..|.+.-+.+ +.| .-+|.+.--| ++-.|--.| -.++..-
T Consensus 243 LK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV---EGG------sTLFkldYyG-----EeAyLTQSS----QLYLEtc 304 (545)
T KOG0555|consen 243 LKARAALLRAMRDHYFERGYTEVTPPTMVQTQV---EGG------STLFKLDYYG-----EEAYLTQSS----QLYLETC 304 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCceecCCCceEEEEe---cCc------ceEEeecccC-----chhhccchh----HHHHHHh
Confidence 467788889999999999999999999987764 222 2344444333 222222211 1112111
Q ss_pred HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 98 i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
+-.. =.+|.|...||.|++.++- .+.||+..|++..+.+..+...-|-++.....+.+
T Consensus 305 lpAl----gdvy~I~~SyRAEkSrTRR--HLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~ 362 (545)
T KOG0555|consen 305 LPAL----GDVYCIQQSYRAEKSRTRR--HLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRL 362 (545)
T ss_pred hhhc----CceeEecHhhhhhhhhhhh--hhhhheeeeeecccccHHHHHHHHHHHHHHHHHHH
Confidence 1111 2589999999999876665 67799999999999988776544444444444443
No 128
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=85.04 E-value=0.33 Score=48.44 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhh
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK 53 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k 53 (401)
-+++.|+. +|+.+-+.||.++--|++++.+-..|
T Consensus 48 pl~~TIq~-lReAYLr~GF~EmvNPlivde~evyk 81 (536)
T COG2024 48 PLYETIQR-LREAYLRMGFSEMVNPLIVDEEEVYK 81 (536)
T ss_pred cHHHHHHH-HHHHHHHhhHHHhcCccccCHHHHHH
Confidence 35555554 78888899999999999998876644
No 129
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=84.84 E-value=2.1 Score=45.76 Aligned_cols=128 Identities=15% Similarity=0.068 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhh-hhhccCcccccc-cceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVL-QKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~-~k~~gh~~~f~~-e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
...+.+.+.+++.+...||+|+.|-.|.+.+.+ .+ - ++.+ +...+..--. ++.=+||++.-+++....+.
T Consensus 362 ~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~-~----~~~~~~~v~l~NPis---~e~s~lR~SLlp~LL~~~~~ 433 (551)
T TIGR00471 362 KPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR-M----RIEDNNDVKVANPKT---LEYTIVRTSLLPGLLETLSE 433 (551)
T ss_pred ChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHH-h----ccCCCCcEEeCCCCc---hhhhHhHhhhHHHHHHHHHh
Confidence 345667778899999999999999999888543 32 1 1222 2233332111 35668999999998887777
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH-HHHHHHHHHHHhC
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE-ILELYRRIYEEFL 162 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e-il~~~~~i~~~l~ 162 (401)
.. ++..|+++|++|.||..... .. .+.+++...-+-+.|. .++-. +-.+...++..++
T Consensus 434 N~--~~~~~~~lFEiG~Vf~~~~~--~~-~~e~~~~~l~~~~~g~---~~df~d~Kg~ve~ll~~l~ 492 (551)
T TIGR00471 434 NK--HHELPQKIFEIGDVVVKDDK--SE-TRSRVVTKLAVGITHS---EANFNEIKSIVAALARELG 492 (551)
T ss_pred cc--cCCCCeeEEEEEEEEEcCCc--cc-cccceeeEEEEEEECC---CCCHHHHHHHHHHHHHHcC
Confidence 76 45789999999999954311 11 1334344444444342 22222 5556666666654
No 130
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=81.63 E-value=2.7 Score=45.31 Aligned_cols=131 Identities=15% Similarity=0.053 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhh-hhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHh
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l-~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (401)
.-.+.+.+.+|+.+...||+|+.|-+|.+.+. +.+ -+. +.-..+...+..--. .+--+||++.-+++....+..
T Consensus 397 ~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~-~~~~~~~v~I~NP~s---~e~~vlRtSLlPgLL~~l~~N 471 (597)
T PLN02265 397 QPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNR-EDDGNSAVIIGNPRS---ADFEVVRTSLLPGLLKTLGHN 471 (597)
T ss_pred CHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcC-CccCCceEEECCCcc---hhHHHHHHhhHHHHHHHHHHh
Confidence 34677888899999999999999999998754 532 111 100012233322111 255678999888887777666
Q ss_pred HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH-HHHHHHHHHHHhC
Q 015762 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE-ILELYRRIYEEFL 162 (401)
Q Consensus 98 i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e-il~~~~~i~~~l~ 162 (401)
.+ +.+|+|+|++|.||-.+.....| .||-...-+-..|.. ++-+ +..+...++..++
T Consensus 472 ~~--~~~p~klFEiG~V~~~~~~~~~~---~~e~~~la~~~~g~~---~~f~~ikg~le~ll~~l~ 529 (597)
T PLN02265 472 KD--APKPIKLFEVSDVVLLDESKDVG---ARNSRRLAALYCGTT---SGFEVIHGLVDRIMEVLG 529 (597)
T ss_pred hc--CCCCeeEEEeEeEEecCCcccCC---cchhhEEEEEEECCC---CCHhhHHHHHHHHHHHcC
Confidence 54 35699999999999543110111 134433333333432 2333 5667777777664
No 131
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=76.08 E-value=3.1 Score=37.19 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcCCCEEEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCC
Q 015762 302 LLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEG 381 (401)
Q Consensus 302 ~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~ 381 (401)
..+.+|..||.++++..++. ++-+.|+| |-+..+. . ++
T Consensus 113 ~~Ek~H~~~~~~~Le~~~~~-----------------~~~vC~vC------------------Gy~~~ge---~----P~ 150 (166)
T COG1592 113 KAEKRHAEMFRGLLERLEEG-----------------KVWVCPVC------------------GYTHEGE---A----PE 150 (166)
T ss_pred HHHHHHHHHHHHHHHhhhcC-----------------CEEEcCCC------------------CCcccCC---C----CC
Confidence 34557888888877765444 38889999 5555441 2 22
Q ss_pred CcccccCCCcceEE
Q 015762 382 TLCFASGKPAKKWT 395 (401)
Q Consensus 382 ~~C~~~g~~a~~~~ 395 (401)
+|+.||-|.....
T Consensus 151 -~CPiCga~k~~F~ 163 (166)
T COG1592 151 -VCPICGAPKEKFE 163 (166)
T ss_pred -cCCCCCChHHHhh
Confidence 6999998876543
No 132
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=74.47 E-value=22 Score=37.04 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHc--------CCeEecc--CCccChhhhh---hhccCcccccccceEEEecCCCCCCCcEEEcCCCCh
Q 015762 22 ETMQKFFDAEIKKM--------KIQNCYF--PLFVSPTVLQ---KEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSET 88 (401)
Q Consensus 22 ~~i~~~~~~~~~~~--------G~~~i~t--P~l~~~~l~~---k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~ 88 (401)
..+.+.|.+.|... ||+.++- |+.-...-|. --.+|..-=..+-|++. +..+||.-..+
T Consensus 45 ~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~--------~~~lLRTHTSa 116 (460)
T TIGR00469 45 GIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN--------EQHLLRAHTSA 116 (460)
T ss_pred HHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec--------CCceeCCCCcH
Confidence 34555556666555 8888877 8543333332 12233322223456662 45788865555
Q ss_pred hHHHHHHHhHhcCCCCCeE--EEeeecceecCCCCCCCcccchhheeccceeecC
Q 015762 89 VMYPYFSKWIRGHRDLPLK--LNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (401)
Q Consensus 89 ~i~~~~~~~i~s~~~LPlk--~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (401)
...+++++...+ ..|++ +.-.|.|||.+.-. +- -+-.|+|.|+-.+..
T Consensus 117 ~q~~~~~~~~~~--~~~~~~~~i~~G~VYRrD~iD-at--H~p~FHQ~EG~~v~~ 166 (460)
T TIGR00469 117 HELECFQGGLDD--SDNIKSGFLISADVYRRDEID-KT--HYPVFHQADGAAIRK 166 (460)
T ss_pred HHHHHHHhcccc--CCCcceeeEeecceeeCCCCc-cc--cCccceeeEEEEEec
Confidence 556777654322 25888 88899999999422 22 566899999755443
No 133
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=66.86 E-value=10 Score=41.71 Aligned_cols=85 Identities=6% Similarity=-0.020 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhH
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (401)
...+.+.+.+++.+...||+|+.|-.|.+.+.+ .++...+..-=. ++.=+||++.-+++....+...
T Consensus 398 ~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~----------~~~~i~l~NPiS---~e~s~lR~SLlpgLL~~~~~N~ 464 (704)
T CHL00192 398 DIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF----------SKNEIKLKNPLI---KDYSTLRSSLLPGLIEAVQENL 464 (704)
T ss_pred CHHHHHHHHHHHHHHhCCCceEecccccChhhc----------CCCcEEEeCCCc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 335566777888899999999999999887532 112333332111 3566899999888887777766
Q ss_pred hcCCCCCeEEEeeecceec
Q 015762 99 RGHRDLPLKLNQWCNVVRW 117 (401)
Q Consensus 99 ~s~~~LPlk~~q~~~vfR~ 117 (401)
+ +...|+++|++|.||-.
T Consensus 465 ~-r~~~~~rlFEiG~Vf~~ 482 (704)
T CHL00192 465 K-QGNSTLEGFEIGHVFNL 482 (704)
T ss_pred h-cCCCCEeEEEeeeeEcC
Confidence 4 34579999999999943
No 134
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=60.86 E-value=18 Score=40.43 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
.....+.+.+.+++.+...||+|+.|-.|.+.+...+ -+ +..+...+..-=. .+.=+||++.-+++....+.
T Consensus 485 ~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~----~~~~~i~l~NPis---~e~~~lR~SLlp~LL~~~~~ 556 (791)
T PRK00629 485 GLTEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FG----LNPEPLLLLNPIS---EELSVMRTSLLPGLLEAVAY 556 (791)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cC----CCCCeEEEeCCCc---hHHHHHHHhhHHHHHHHHHH
Confidence 3444566778889999999999999999998866532 21 1122233322100 25567899988888777776
Q ss_pred hHhcCCCCCeEEEeeecceec
Q 015762 97 WIRGHRDLPLKLNQWCNVVRW 117 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~ 117 (401)
..+ +...|+++|++|.||..
T Consensus 557 N~~-~~~~~i~lFEiG~Vf~~ 576 (791)
T PRK00629 557 NLN-RGNKDVALFEIGRVFLP 576 (791)
T ss_pred HHh-CCCCCEeEEeeeeeeCC
Confidence 664 34579999999999954
No 135
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=60.37 E-value=25 Score=33.23 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=47.4
Q ss_pred CCCceEEEEEcCCCCCC------hhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCc
Q 015762 201 VASVQVIVIPVPYKDAD------TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGP 269 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~------~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~ 269 (401)
+.|.||.+||-...+-+ -....+....+.++|+++||+|.+.-.++ -.++..|...|++. |++--
T Consensus 82 vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~---~~qi~~A~~~GAd~-VELhT 152 (237)
T TIGR00559 82 IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD---KDQISAAAEVGADR-IEIHT 152 (237)
T ss_pred cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEEec
Confidence 57889999996543211 12245667888999999999999876542 46899999999995 56643
No 136
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=59.97 E-value=27 Score=33.03 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=47.1
Q ss_pred CCCceEEEEEcCCCCCC------hhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeC
Q 015762 201 VASVQVIVIPVPYKDAD------TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 268 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~------~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG 268 (401)
+.|.||.+||-...+-+ -....+....+.++|+++||+|.+.-.++ -.++..|...|++. |++-
T Consensus 82 ~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd---~~qi~~A~~~GAd~-VELh 151 (234)
T cd00003 82 VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD---PEQIEAAKEVGADR-VELH 151 (234)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEEe
Confidence 57889999996543211 11245677888999999999999876542 36799999999995 5664
No 137
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=59.82 E-value=17 Score=39.78 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHh
Q 015762 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKW 97 (401)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~ 97 (401)
....+...+.+++.+...||+|+-|-.|.+.+.... .+ ...++...+..--. .+.-+||++.=+++-..++..
T Consensus 350 ~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~-~~---~~~~~~~~l~NPiS---~e~s~mR~sLlp~LL~~~~~N 422 (650)
T COG0072 350 LTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKL-FG---LENDEALELANPIS---EEYSVLRTSLLPGLLEALSYN 422 (650)
T ss_pred CChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHH-hc---cCCCcceEecCCcc---hhHHHHHHHHHHHHHHHHHHh
Confidence 345667778899999999999999999999987743 22 11222222221111 245567887766666555554
Q ss_pred HhcCCCCC-eEEEeeecceecC
Q 015762 98 IRGHRDLP-LKLNQWCNVVRWE 118 (401)
Q Consensus 98 i~s~~~LP-lk~~q~~~vfR~E 118 (401)
. ++..| +++|++|.||-.+
T Consensus 423 ~--~r~~~~~~iFEiG~v~~~~ 442 (650)
T COG0072 423 K--NRKNPDVRIFEIGDVFVKD 442 (650)
T ss_pred h--ccCCCCeeEEEeeeeEecC
Confidence 3 46889 9999999999876
No 138
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=58.35 E-value=27 Score=33.07 Aligned_cols=69 Identities=23% Similarity=0.280 Sum_probs=48.6
Q ss_pred CCCceEEEEEcCCCCCC------hhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccC
Q 015762 201 VASVQVIVIPVPYKDAD------TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA 273 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~------~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~ 273 (401)
+.|-||.+||-...+-+ -....+....+.++|+++||||.+.-.++ -.++..|...|++. |++---..+
T Consensus 85 ~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~---~~qi~~A~~~GAd~-VELhTG~yA 159 (239)
T PRK05265 85 VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPD---PEQIEAAAEVGADR-IELHTGPYA 159 (239)
T ss_pred CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEEechhhh
Confidence 57889999996543211 11245677788999999999999876432 35799999999995 676433333
No 139
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=52.71 E-value=32 Score=38.57 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhHhcCCCCC
Q 015762 26 KFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHRDLP 105 (401)
Q Consensus 26 ~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LP 105 (401)
+.+++.+...||+|+.|-.|.+.+.+.+ .+. + ..+....+..--. ++.=+||++.-+++....+...+ +...|
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~-~-~~~~~i~l~NPis---~e~s~lR~SLlpgLL~~~~~N~~-~~~~~ 570 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEK-FNF-P-KLENLVEIKNPLS---NERSVLRTSLLPSLLEVLAYNQN-RKNKD 570 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHh-hcC-C-CCCceEEEeCCCc---hHHHHHHHhhHHHHHHHHHHHHh-CCCCC
Confidence 5678889999999999999998865532 221 1 1111334433111 24567899988888877776664 33678
Q ss_pred eEEEeeeccee
Q 015762 106 LKLNQWCNVVR 116 (401)
Q Consensus 106 lk~~q~~~vfR 116 (401)
+++|++|.||.
T Consensus 571 ~~lFEiG~V~~ 581 (798)
T TIGR00472 571 VKIFEIGKVFA 581 (798)
T ss_pred EeEEeeecccC
Confidence 99999999994
No 140
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=51.35 E-value=26 Score=33.20 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=40.4
Q ss_pred CCCceEEEEEcCCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEe
Q 015762 201 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEI 267 (401)
Q Consensus 201 iap~qV~Iipi~~~~~------~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iii 267 (401)
+.|-||.+||-....- +-....+....+.++|+++||||.+.-..+ -.++..|.+.|++. |++
T Consensus 83 ~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~---~~qi~~A~~~Gad~-VEL 151 (239)
T PF03740_consen 83 VKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD---PEQIEAAKELGADR-VEL 151 (239)
T ss_dssp H--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT-SE-EEE
T ss_pred CCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC---HHHHHHHHHcCCCE-EEE
Confidence 4788999999542211 112235778899999999999999876542 46899999999995 566
No 141
>PHA02278 thioredoxin-like protein
Probab=49.91 E-value=14 Score=30.16 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=19.0
Q ss_pred cCHHHHHHHhcCCCEE----EeecCCChh
Q 015762 326 KTWDEFVEALGQRKMI----LAPWCDEEE 350 (401)
Q Consensus 326 ~~~~e~~~~~~~~~~~----~~pwc~~~~ 350 (401)
+|++||.+.+++++.+ -|||||.=.
T Consensus 2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk 30 (103)
T PHA02278 2 NSLVDLNTAIRQKKDVIVMITQDNCGKCE 30 (103)
T ss_pred CCHHHHHHHHhCCCcEEEEEECCCCHHHH
Confidence 6899999999876643 478998643
No 142
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=48.11 E-value=1.4e+02 Score=23.82 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCc-eeeechhhHHHHHH
Q 015762 222 FDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGA-KIDLPRGSLVERVK 300 (401)
Q Consensus 222 ~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~-k~~v~~~el~~~i~ 300 (401)
.-.+..|.+.+++.|+.+.+..+....+...+...+....-++|++|..+.+. .|-.|. -...++++....-.
T Consensus 15 ~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~------~rf~gk~v~~~~~~~~l~~~~ 88 (96)
T cd05569 15 YMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD------ERFAGKRVYEVSVAEAIKDAE 88 (96)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCch------hhhCCCeEEEecHHHHHHHHH
Confidence 34567888889999999998865432334444444455666999999877544 344443 45566776655544
Q ss_pred HHHH
Q 015762 301 ELLE 304 (401)
Q Consensus 301 ~~l~ 304 (401)
..|+
T Consensus 89 ~vl~ 92 (96)
T cd05569 89 AVIE 92 (96)
T ss_pred HHHH
Confidence 4444
No 143
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=40.16 E-value=2.2e+02 Score=23.73 Aligned_cols=82 Identities=7% Similarity=0.030 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCC-ceeeechhhHHHHHHH
Q 015762 223 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG-AKIDLPRGSLVERVKE 301 (401)
Q Consensus 223 ~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg-~k~~v~~~el~~~i~~ 301 (401)
-.+..|.+.-++.|+.+.++.+....+..++..-+....-++|++|+.+..+. .|-.| .-..+++++....-..
T Consensus 20 lAAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~~~~~-----~rF~gk~v~~~s~~~ai~d~~~ 94 (114)
T PRK10427 20 MAAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGA-----ERFEHCRYVQCSIYAFLREPQR 94 (114)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCCch-----hhhCCCeEEEecHHHHHHHHHH
Confidence 34566777777789999988775334444444445555569999998774221 13334 3466788887776666
Q ss_pred HHHHHHHH
Q 015762 302 LLEEVQES 309 (401)
Q Consensus 302 ~l~~~~~~ 309 (401)
.|+...+.
T Consensus 95 vl~~a~~~ 102 (114)
T PRK10427 95 VMSAVRKV 102 (114)
T ss_pred HHHHHHHH
Confidence 66654443
No 144
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=39.79 E-value=65 Score=26.09 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCC
Q 015762 204 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD 245 (401)
Q Consensus 204 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~ 245 (401)
.++.|+|++..+ +.+.+|..++.+.|++.|++..+....
T Consensus 3 aeisv~P~g~~~---~s~s~yVa~~i~~l~~sGl~y~~~pm~ 41 (97)
T TIGR00106 3 AEVSIIPIGTVG---ASVSSYVAAAIEVLKESGLKYELHPMG 41 (97)
T ss_pred EEEEEeecCCCC---CcHHHHHHHHHHHHHHcCCCeEecCCc
Confidence 367899997433 457788888999999999999887653
No 145
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=38.38 E-value=37 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=22.0
Q ss_pred cCeeeecCHHHHHHHhcCCCE----EEeecCCC
Q 015762 320 ACIQIVKTWDEFVEALGQRKM----ILAPWCDE 348 (401)
Q Consensus 320 ~~~~~~~~~~e~~~~~~~~~~----~~~pwc~~ 348 (401)
..+..+++.++|.+++.+++. .-+|||+.
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~ 36 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFR 36 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCcc
Confidence 356788999999999976553 34589984
No 146
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=37.77 E-value=83 Score=25.14 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCC
Q 015762 205 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 244 (401)
Q Consensus 205 qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~ 244 (401)
.+.|+|++..+ +.+.++..++.+.|++.|++..+...
T Consensus 2 ei~v~P~g~~~---~s~~~~V~~~i~~i~~sgl~y~v~pm 38 (92)
T PF01910_consen 2 EISVIPIGTGG---ESVSAYVAEAIEVIKESGLKYEVGPM 38 (92)
T ss_dssp EEEEEEESSSS---SHHHHHHHHHHHHHHTSSSEEEEETT
T ss_pred EEEEEeCCCCC---CCHHHHHHHHHHHHHHcCCceEEcCC
Confidence 46789998533 56888999999999999999888765
No 147
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=37.75 E-value=2.8e+02 Score=26.76 Aligned_cols=74 Identities=9% Similarity=-0.015 Sum_probs=52.3
Q ss_pred EEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCC----H----HHHHHHHHHhCCCEEEEe----------Cc
Q 015762 208 VIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYS----P----GWKYSHWEMKGVPLRIEI----------GP 269 (401)
Q Consensus 208 Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s----~----g~k~~~ae~~GvP~~iii----------G~ 269 (401)
+++|+... .++..+...+.++++++.+++|.+.....++ + +-.|.-|-+.+||++=++ +.
T Consensus 137 vvfIdR~r--~~~Ai~~l~~~~~~mkk~~~kvWvFPEGTRn~~g~llPFKKGAF~lAvqaqVPIVPvv~ssy~~f~~~~~ 214 (276)
T KOG2848|consen 137 VVFIDRSR--REKAIDTLDKCAERMKKENRKVWVFPEGTRNKEGRLLPFKKGAFHLAVQAQVPIVPVVFSSYGDFYSTKE 214 (276)
T ss_pred ceEEecCC--HHHHHHHHHHHHHHHHhCCeeEEEccCCccCCCCcccccccceeeeehhcCCCEEEEEEecccccccCcc
Confidence 34555432 3667788889999999988999997542211 1 224888999999987554 34
Q ss_pred cccCCCeEEEEECC
Q 015762 270 KDLANDQVRAVRRD 283 (401)
Q Consensus 270 kE~~~~~V~v~~r~ 283 (401)
+-+.+|+|.|+..+
T Consensus 215 k~f~sG~v~V~vL~ 228 (276)
T KOG2848|consen 215 KVFNSGNVIVRVLP 228 (276)
T ss_pred ceeecceEEEEEcC
Confidence 55778999999886
No 148
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=37.63 E-value=3.1e+02 Score=27.56 Aligned_cols=109 Identities=22% Similarity=0.257 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015762 223 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 302 (401)
Q Consensus 223 ~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~ 302 (401)
+....+++.|++.||...+--..+-|..-...-++.-|+|++=+ |+.+.|. -.+.+.++-.+-..+.+.+.
T Consensus 81 e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv--PkTIDND-------i~~td~tiGfdTA~~~~~ea 151 (347)
T COG0205 81 EGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGV--PKTIDND-------ISGTDFTIGFDTALETAVEA 151 (347)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEec--CCCccCC-------CcccccCccHHHHHHHHHHH
Confidence 33447888999999998886543346766667777777887655 4444443 23667788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHcCeeee----cCHHHHHHHhcCC-CEEEee
Q 015762 303 LEEVQESLFVAAKQRRDACIQIV----KTWDEFVEALGQR-KMILAP 344 (401)
Q Consensus 303 l~~~~~~l~~~a~~~~~~~~~~~----~~~~e~~~~~~~~-~~~~~p 344 (401)
++.++ +.|..+-.-+++.+ -.|=-+..++..+ .++++|
T Consensus 152 id~l~----dtassh~r~~iveVMGR~aG~lAl~aglA~~a~~ilip 194 (347)
T COG0205 152 IDNLR----DTASSHERIFIVEVMGRHAGWLALAAGLATGADIILIP 194 (347)
T ss_pred HHHHH----HHHhCcCCEEEEEecCcChhHHHHHHHHhcCCCEEEec
Confidence 87665 55666666667766 4455566666543 577777
No 149
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=37.14 E-value=74 Score=26.05 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCC
Q 015762 204 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD 245 (401)
Q Consensus 204 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~ 245 (401)
..+.|+|++..+ ..+.+|..++.+.|++.|++..+....
T Consensus 5 v~~sviP~gt~~---~svs~yVa~~i~~lk~~glky~~~pm~ 43 (100)
T COG0011 5 VELSVIPLGTGG---PSVSKYVAEAIEILKESGLKYQLGPMG 43 (100)
T ss_pred EEEEEEecCCCC---CCHHHHHHHHHHHHHHcCCceeecCcc
Confidence 467899998544 457889999999999999988877653
No 150
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=35.82 E-value=2.4e+02 Score=26.80 Aligned_cols=42 Identities=14% Similarity=-0.058 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEe
Q 015762 224 ACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEI 267 (401)
Q Consensus 224 ~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iii 267 (401)
-|..+..+|+++|++|....+ ++...+..+++.+|+|=+..|
T Consensus 27 pA~pv~~el~d~G~~Vi~~SS--KT~aE~~~l~~~l~v~~~p~i 68 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSS--KTRAEMLYLQKSLGVQGLPLI 68 (274)
T ss_pred ccchHHHHHHHcCCeEEEecc--chHHHHHHHHHhcCCCCCcee
Confidence 356788899999999999886 489999999999999944444
No 151
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=33.15 E-value=2.3e+02 Score=22.25 Aligned_cols=80 Identities=9% Similarity=0.087 Sum_probs=47.5
Q ss_pred HHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCC-ceeeechhhHHHHHHHHH
Q 015762 225 CTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG-AKIDLPRGSLVERVKELL 303 (401)
Q Consensus 225 a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg-~k~~v~~~el~~~i~~~l 303 (401)
+..|.+.-++.|+.+.++.+....+-.++..-+....-++|++|...+.+ ..|-.| .-..+++++.+..-...+
T Consensus 3 AeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~~i~~-----~~rf~gk~v~~~s~~~ai~~~~~vl 77 (88)
T PRK10474 3 AEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKF-----EERFAGKTIVRVNISDAVKRADAIM 77 (88)
T ss_pred HHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCcc-----hhccCCCceEEecHHHHHHCHHHHH
Confidence 34566666778999998876533333444444455556999999877532 123333 346677777765555555
Q ss_pred HHHHHH
Q 015762 304 EEVQES 309 (401)
Q Consensus 304 ~~~~~~ 309 (401)
+..++.
T Consensus 78 ~~a~~~ 83 (88)
T PRK10474 78 SKIEAH 83 (88)
T ss_pred HHHHHH
Confidence 544433
No 152
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=31.75 E-value=45 Score=26.59 Aligned_cols=25 Identities=20% Similarity=0.622 Sum_probs=19.3
Q ss_pred eecCHHHHHHHhcCCCE----EEeecCCC
Q 015762 324 IVKTWDEFVEALGQRKM----ILAPWCDE 348 (401)
Q Consensus 324 ~~~~~~e~~~~~~~~~~----~~~pwc~~ 348 (401)
.++|.+++...+++++. .-+|||+.
T Consensus 3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~ 31 (102)
T cd02948 3 EINNQEEWEELLSNKGLTVVDVYQEWCGP 31 (102)
T ss_pred EccCHHHHHHHHccCCeEEEEEECCcCHh
Confidence 46889999999987763 45789975
No 153
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=31.47 E-value=4.4e+02 Score=25.84 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 224 ACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 224 ~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
...++++.|++.||...+--..+-|+.--..-++..++|++.+ |+.+.|+.. +...++-.+..++.+.+.+
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigi--PkTIDNDl~-------~td~s~GfdTA~~~~~~~i 149 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGL--PGTIDNDIP-------GTDYTIGFDTALNTIIDAV 149 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEee--cccccCCCc-------CcccCcChhHHHHHHHHHH
Confidence 3457888999999999987654446655445455578887544 777777532 5566777777777777666
Q ss_pred HHH
Q 015762 304 EEV 306 (401)
Q Consensus 304 ~~~ 306 (401)
+.+
T Consensus 150 ~~i 152 (301)
T TIGR02482 150 DKI 152 (301)
T ss_pred HHH
Confidence 655
No 154
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=30.91 E-value=96 Score=24.65 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=12.9
Q ss_pred eechhhHHHHHHHHHHHHHH
Q 015762 289 DLPRGSLVERVKELLEEVQE 308 (401)
Q Consensus 289 ~v~~~el~~~i~~~l~~~~~ 308 (401)
.++++++.+++.+.+.....
T Consensus 23 ~~~l~~l~~fl~~~l~~~~~ 42 (109)
T PF10367_consen 23 DWPLSDLSDFLCKSLRKYSN 42 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 56777777777766655443
No 155
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=30.84 E-value=1.8e+02 Score=25.28 Aligned_cols=55 Identities=16% Similarity=0.022 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEcCCCC--CCHHHHHHHHHHhCCCEEEEeCccccC
Q 015762 219 QGIFDACTATVEKLCEAGIRANSDFRDN--YSPGWKYSHWEMKGVPLRIEIGPKDLA 273 (401)
Q Consensus 219 ~~~~~~a~~l~~~Lr~~Girv~iD~~~~--~s~g~k~~~ae~~GvP~~iiiG~kE~~ 273 (401)
+-..+.|..|.+.|++.|++|.+.-..+ .++..+...++..+.-+.|.|--+-..
T Consensus 24 ~~~l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~ 80 (175)
T PF01520_consen 24 DINLDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASN 80 (175)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCcc
Confidence 4467889999999999999999864432 479999999999999999998765443
No 156
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=30.29 E-value=1.2e+02 Score=28.59 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=43.9
Q ss_pred CCCceEEEEEcCCCCCCh------hhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEe
Q 015762 201 VASVQVIVIPVPYKDADT------QGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEI 267 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~~------~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iii 267 (401)
.-|-||.+||=...+-++ ....+....+..+|++.||||.+.-..+ ..++..+..-|+|+ |++
T Consensus 83 ~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~d---~~qi~aa~~~gA~~-IEL 151 (243)
T COG0854 83 TKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDPD---PEQIEAAAEVGAPR-IEL 151 (243)
T ss_pred cCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCCC---HHHHHHHHHhCCCE-EEE
Confidence 468899999954221111 1224666788899999999999865432 35788999999996 454
No 157
>PRK14072 6-phosphofructokinase; Provisional
Probab=30.13 E-value=3.5e+02 Score=27.93 Aligned_cols=113 Identities=22% Similarity=0.153 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCH--HHHHHH-HHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015762 224 ACTATVEKLCEAGIRANSDFRDNYSP--GWKYSH-WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 300 (401)
Q Consensus 224 ~a~~l~~~Lr~~Girv~iD~~~~~s~--g~k~~~-ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~ 300 (401)
...++.+.|++.||...+--..+-|+ ..++.+ +...|.++.++-=|+.+.|+. .+...++-.+..++.+.
T Consensus 91 ~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl-------~gtD~t~GF~TA~~~i~ 163 (416)
T PRK14072 91 EYERLLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDL-------PGTDHCPGFGSAAKYIA 163 (416)
T ss_pred HHHHHHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCC-------CCCCCCCChHHHHHHHH
Confidence 44678889999999999865433355 334443 334685554444477776652 25567777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCeeee----cCHHHHHHHhc-----CC-CEEEee
Q 015762 301 ELLEEVQESLFVAAKQRRDACIQIV----KTWDEFVEALG-----QR-KMILAP 344 (401)
Q Consensus 301 ~~l~~~~~~l~~~a~~~~~~~~~~~----~~~~e~~~~~~-----~~-~~~~~p 344 (401)
+.++.+..+...-|..+ .-.|+.+ .-|=-+..+|. .| .++++|
T Consensus 164 ~ai~~l~~D~~~ta~s~-Rv~iVEvMGR~aG~LAl~a~lA~~~~~~gad~iliP 216 (416)
T PRK14072 164 TSVLEAALDVAAMANTS-KVFILEVMGRHAGWLAAAAALAKQNPDDAPHLIYLP 216 (416)
T ss_pred HHHHHHHHHHHhcccCc-eEEEEEEeCcchhHHHHHHhhccccCCCCccEEEcc
Confidence 88877766654444433 2333333 23444555565 22 366666
No 158
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=30.09 E-value=2.3e+02 Score=24.69 Aligned_cols=54 Identities=17% Similarity=0.040 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEcCCCC--CCHHHHHHHHHHhCCCEEEEeCcccc
Q 015762 219 QGIFDACTATVEKLCEAGIRANSDFRDN--YSPGWKYSHWEMKGVPLRIEIGPKDL 272 (401)
Q Consensus 219 ~~~~~~a~~l~~~Lr~~Girv~iD~~~~--~s~g~k~~~ae~~GvP~~iiiG~kE~ 272 (401)
+.....+..+...|++.|++|.+.-.++ .++..+...+...+.-+.|.+--+--
T Consensus 25 ~~~~~ia~~l~~~L~~~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~ 80 (172)
T cd02696 25 DINLAIALKLAKLLEAAGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAA 80 (172)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCC
Confidence 4567889999999999999998754322 47999999999999999999865443
No 159
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=29.02 E-value=6.3e+02 Score=25.68 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=64.3
Q ss_pred EEEEEcCCCCC--ChhhHHHHHHHHHHHHhhCCCEEEE--cCCCCCCHHH-HHHHHHHhCCCEEEEeCccccCCCeEEEE
Q 015762 206 VIVIPVPYKDA--DTQGIFDACTATVEKLCEAGIRANS--DFRDNYSPGW-KYSHWEMKGVPLRIEIGPKDLANDQVRAV 280 (401)
Q Consensus 206 V~Iipi~~~~~--~~~~~~~~a~~l~~~Lr~~Girv~i--D~~~~~s~g~-k~~~ae~~GvP~~iiiG~kE~~~~~V~v~ 280 (401)
|=|||+-.|.. +.+++...=..|.+.|...+|+|.- |..+ .+... --...-.--+||.|+=+..+.+++.=+++
T Consensus 163 vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e~-~~~e~~e~~~~l~~~~PFAII~S~~~~~~~~~~vr 241 (373)
T COG5019 163 VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFDPYDPED-DEDESLEENQDLRSLIPFAIIGSNTEIENGGEQVR 241 (373)
T ss_pred cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCccc-cchhhHHHHHHHhhcCCeEEEeccceeccCCceee
Confidence 44677654433 4567777888899999999999985 3322 12111 11222223499998877777777653334
Q ss_pred ECCCCceeeechh-----hH--------HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 015762 281 RRDNGAKIDLPRG-----SL--------VERVKELLEEVQESLFVAAKQRRDAC 321 (401)
Q Consensus 281 ~r~tg~k~~v~~~-----el--------~~~i~~~l~~~~~~l~~~a~~~~~~~ 321 (401)
-|.- .-..|.++ ++ ...+.++.+.=+..+|++=+...-..
T Consensus 242 gR~Y-pWG~v~Idd~~hsDF~~Lr~~Li~thL~~L~~~T~~~~YE~YR~e~L~~ 294 (373)
T COG5019 242 GRKY-PWGVVEIDDEEHSDFKKLRNLLIRTHLQELKETTENLLYENYRTEKLSG 294 (373)
T ss_pred eecc-CCcceecCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4421 11222222 22 23455666666666888766554333
No 160
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=28.87 E-value=1e+02 Score=27.64 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcC-C--CEEE----eecCCCh
Q 015762 301 ELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQ-R--KMIL----APWCDEE 349 (401)
Q Consensus 301 ~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~-~--~~~~----~pwc~~~ 349 (401)
+.++++++.+ ++...-..++.+++.++|.+.+.+ + +.|+ +|||+.-
T Consensus 46 ~R~~el~~~~---~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~C 98 (175)
T cd02987 46 QRMQEMHAKL---PFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGC 98 (175)
T ss_pred HHHHHHHHhc---cccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchH
Confidence 3444444442 233345677888998999999864 2 2433 5788753
No 161
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=27.50 E-value=2.8e+02 Score=22.81 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=39.9
Q ss_pred HHHHH-HhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCc--c-----------ccC-CCeEEEEECCCCceeeec
Q 015762 227 ATVEK-LCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGP--K-----------DLA-NDQVRAVRRDNGAKIDLP 291 (401)
Q Consensus 227 ~l~~~-Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~--k-----------E~~-~~~V~v~~r~tg~k~~v~ 291 (401)
.+... ++..|+.+..-... ..+......|.|+++.++. . -.. ++.+.+.+..+++...++
T Consensus 48 ~l~~~~a~~~G~~~~~~~~~-----~~~~~~l~~~~Pvi~~~~~~~~~~~~gH~vVv~g~~~~~~~~i~DP~~~~~~~~~ 122 (141)
T cd02549 48 PIVSAAARKYGLVVRPLTGL-----LALLRQLAAGHPVIVSVNLGVSITPSGHAMVVIGYDRKGNVYVNDPGGGRRLVVS 122 (141)
T ss_pred HHHHHHHhhCCCcEEECCCH-----HHHHHHHHCCCeEEEEEecCcccCCCCeEEEEEEEcCCCCEEEECCCCCcCEEEe
Confidence 44555 67779887753321 1266777889999887641 0 122 555666666666556677
Q ss_pred hhhHHH
Q 015762 292 RGSLVE 297 (401)
Q Consensus 292 ~~el~~ 297 (401)
.+++.+
T Consensus 123 ~~~f~~ 128 (141)
T cd02549 123 FDEFEK 128 (141)
T ss_pred HHHHHH
Confidence 666543
No 162
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=27.23 E-value=2.2e+02 Score=21.83 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=28.7
Q ss_pred CCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcC
Q 015762 197 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDF 243 (401)
Q Consensus 197 lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~ 243 (401)
|+|.-.|--++++.=+. .+.......+++.|.+.|+.|..-|
T Consensus 9 w~p~~~~k~~v~i~HG~-----~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 9 WKPENPPKAVVVIVHGF-----GEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred ecCCCCCCEEEEEeCCc-----HHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 44443445555555443 4566778899999999999998644
No 163
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=27.20 E-value=5.3e+02 Score=25.13 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEcCCC--CCCHHHHHHHHHHhCCCEEEEeCcccc
Q 015762 219 QGIFDACTATVEKLCEAGIRANSDFRD--NYSPGWKYSHWEMKGVPLRIEIGPKDL 272 (401)
Q Consensus 219 ~~~~~~a~~l~~~Lr~~Girv~iD~~~--~~s~g~k~~~ae~~GvP~~iiiG~kE~ 272 (401)
+-.++.|.++.+.|++.|++|.+--.+ ..++..+...|+..+.-+.|-|--+..
T Consensus 82 di~L~IA~~l~~~L~~~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~ 137 (287)
T PRK10319 82 HVVLAIAKNVRSILRNHGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGF 137 (287)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 346788999999999999999984221 258999999999999999999876543
No 164
>PLN03194 putative disease resistance protein; Provisional
Probab=26.76 E-value=72 Score=29.15 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCC---CCHHHHHHHHHHhCCCEEEEe
Q 015762 203 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDN---YSPGWKYSHWEMKGVPLRIEI 267 (401)
Q Consensus 203 p~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~---~s~g~k~~~ae~~GvP~~iii 267 (401)
+++|.|=--+. +.-...+..|+..|+.+||+|.+|+..- .++...+..|- ....+.|+|
T Consensus 26 ~yDVFISFrG~-----DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AI-eeSri~IvV 87 (187)
T PLN03194 26 PCDVFINHRGI-----DTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAI-RNCKVGVAV 87 (187)
T ss_pred CCcEEEeCCCc-----cccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHH-HhCeEEEEE
Confidence 57777643331 2123567899999999999999998531 23444444442 344444443
No 165
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=26.39 E-value=1.6e+02 Score=23.55 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=35.5
Q ss_pred CCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCC-----CHHHHHHHHHHhCCCEEEEe
Q 015762 201 VASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNY-----SPGWKYSHWEMKGVPLRIEI 267 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~-----s~g~k~~~ae~~GvP~~iii 267 (401)
..+..|+|.|....+....-....+.-|.+.|+..|.---++...-. .-.-.+..|..+|+.+.+.-
T Consensus 10 ~~~~pIaV~~f~~~~~~~~~~~~i~~vi~~DL~~SG~F~~i~~~~~~~~~~~~~~~~~~~w~~~gad~lv~G 81 (105)
T PF04052_consen 10 DQKIPIAVPPFQGDGGDAELGEDIAEVISNDLKRSGLFRVIDPSSFPQDPSSPSQVNFSDWRSLGADYLVTG 81 (105)
T ss_dssp GGSEEEEE---EESSSS-S-SS-HHHHHHHHHHHTTSEEE--GGG-S---SSGGG--HHHHHTTT-SEEEEE
T ss_pred CccCCEEEecCCCCCcccchhHHHHHHHHHHHHhCCCceEcCchhcccCCCccCCcCHHHHHHcCCCEEEEE
Confidence 45677888887533211011234566788999999985556654211 23447899999999996543
No 166
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=26.39 E-value=67 Score=25.21 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=17.6
Q ss_pred eeeecCHHHHHHHhcCCCEEE----eecCCC
Q 015762 322 IQIVKTWDEFVEALGQRKMIL----APWCDE 348 (401)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~----~pwc~~ 348 (401)
++.+ |.++|.+.+++++.++ +|||+.
T Consensus 3 ~~~l-~~~~f~~~v~~~~~~~v~f~a~wC~~ 32 (101)
T cd03003 3 IVTL-DRGDFDAAVNSGEIWFVNFYSPRCSH 32 (101)
T ss_pred eEEc-CHhhHHHHhcCCCeEEEEEECCCChH
Confidence 4444 4667888887767444 799985
No 167
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=22 Score=32.52 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCEEEeecCC-ChhHHHHHH
Q 015762 328 WDEFVEALGQRKMILAPWCD-EEEVEKDVK 356 (401)
Q Consensus 328 ~~e~~~~~~~~~~~~~pwc~-~~~~e~~ik 356 (401)
.++|++....+.++++|+|- +.+||.++-
T Consensus 79 ~k~fkk~~~~Kr~llLPhClR~~~CeA~~t 108 (209)
T COG1852 79 EKDFKKIPVGKRLLLLPHCLRNPKCEAKLT 108 (209)
T ss_pred HHHHhhCCcccEEEEchhhhcCCCCccccc
Confidence 34577766666799999996 467886543
No 168
>PRK05137 tolB translocation protein TolB; Provisional
Probab=25.50 E-value=2.8e+02 Score=28.22 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCCceEEEEEcCCCCC-ChhhHHHHHHHHHHHHhhCCCEEEEcCCC--C--CC--HHHHHHHHHHhCCCEEEEeCcccc
Q 015762 200 KVASVQVIVIPVPYKDA-DTQGIFDACTATVEKLCEAGIRANSDFRD--N--YS--PGWKYSHWEMKGVPLRIEIGPKDL 272 (401)
Q Consensus 200 ~iap~qV~Iipi~~~~~-~~~~~~~~a~~l~~~Lr~~Girv~iD~~~--~--~s--~g~k~~~ae~~GvP~~iiiG~kE~ 272 (401)
...+++|+|+|...... ........+.-|++.|...|.---++... . .+ -+-.+..|..+|+.++|.-+-+..
T Consensus 31 ~~~~~~ia~~~~~~~~~~~~~~~~~i~~ii~~DL~~sG~F~~~~~~~~~~~~~~~~~~~~~~~w~~~ga~~lv~g~v~~~ 110 (435)
T PRK05137 31 NVEPLPIAIPDFVAGTALADELGADIAKVIANDLKRSGLFAPIDKAAFIEKITNPDAAPRFADWKAINAQALVTGSVTKQ 110 (435)
T ss_pred CccccCEEEcCccCCCccccccchhHHHHHHhhHHhCCCceecChhhcccCCCCcccccChHHHHhcCCCEEEEEEEEEC
Confidence 34667788888753210 00112345677889999888543344321 0 01 124578999999999766554555
Q ss_pred CCCe--EEEEECC--CC-----ceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecC
Q 015762 273 ANDQ--VRAVRRD--NG-----AKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKT 327 (401)
Q Consensus 273 ~~~~--V~v~~r~--tg-----~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~ 327 (401)
.+|. |.++-.| ++ +..+++.+++-......-+++.+.|-- -+-.++.+|..+..
T Consensus 111 ~~~~~~v~~~l~dv~~~~~~~~~~~~~~~~~~r~~ah~~~d~i~~~ltg-~~g~f~~~iafv~~ 173 (435)
T PRK05137 111 SDGRLKVEFRLWDVFAGQQLTGQQFVTPPENWRRAAHKIADAIYERLTG-EKGYFDTRIVYVAE 173 (435)
T ss_pred CCCeEEEEEEEEEcCCCcEeeeeEEEcCHHHHHHHHHHHHHHHHHHHhC-CCCcCCCeEEEEEe
Confidence 6553 4443333 33 345566666666666777777777654 35677788877654
No 169
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=23.96 E-value=1.5e+02 Score=25.26 Aligned_cols=34 Identities=21% Similarity=0.049 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHHHHhhC-CCEEEEcC
Q 015762 206 VIVIPVPYKDADTQGIFDACTATVEKLCEA-GIRANSDF 243 (401)
Q Consensus 206 V~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~-Girv~iD~ 243 (401)
|.|+--.. .++..+....+++.|++. |+.|.+|.
T Consensus 3 VfI~Ys~d----~~~h~~~V~~la~~L~~~~g~~V~lD~ 37 (150)
T PF08357_consen 3 VFISYSHD----SEEHKEWVLALAEFLRQNCGIDVILDQ 37 (150)
T ss_pred EEEEeCCC----CHHHHHHHHHHHHHHHhccCCceeecH
Confidence 55655442 266778899999999999 99999995
No 170
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=23.73 E-value=3.1e+02 Score=24.63 Aligned_cols=54 Identities=13% Similarity=0.001 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEEcCCCC----------------CCHHHHHHHHHHhCCCEEEEeCcccc
Q 015762 219 QGIFDACTATVEKLCEAGIRANSDFRDN----------------YSPGWKYSHWEMKGVPLRIEIGPKDL 272 (401)
Q Consensus 219 ~~~~~~a~~l~~~Lr~~Girv~iD~~~~----------------~s~g~k~~~ae~~GvP~~iiiG~kE~ 272 (401)
+-.+..+..+++.|++.|+.|.+--.++ .++..+...|+..+.-+.|-|--+-.
T Consensus 26 ~~~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~Na~ 95 (189)
T TIGR02883 26 DITLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLNAF 95 (189)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecCCC
Confidence 4577889999999999999998632211 15788899999999999998876543
No 171
>PRK04792 tolB translocation protein TolB; Provisional
Probab=22.60 E-value=5.1e+02 Score=26.68 Aligned_cols=125 Identities=16% Similarity=0.109 Sum_probs=68.0
Q ss_pred CCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCC-----CCCHHHHHHHHHHhCCCEEEEeCccccC
Q 015762 199 PKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD-----NYSPGWKYSHWEMKGVPLRIEIGPKDLA 273 (401)
Q Consensus 199 ~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~-----~~s~g~k~~~ae~~GvP~~iiiG~kE~~ 273 (401)
+...+.+|+|+|....+.. ....+.+.-|.+.|...|.---++.+. ...-.-.|+.|...|+.+.|.-+-....
T Consensus 30 ~~~~~~~ia~~~~~~~~~~-~~~~~~~~~i~~dl~~sg~f~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~v~g~~~~~~ 108 (448)
T PRK04792 30 GIDSARPIAVVPFKWQGTG-PLPQDISDVVASDLQRSGKFSPLDTLKMPQTPISEAQINYSAWTNLGVEAVVVGSVKPYG 108 (448)
T ss_pred CcCCcCceEECCCCCCCCC-ccchhHHHHHHHHHHhCcCccccChhhCcCCCCcccccChHHHHhcCCCEEEEEEEEECC
Confidence 3457778889887422110 112245667888999888654444321 1122345789999999996554434445
Q ss_pred CCeEEEEEC--C--CCc-------------------------eeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeee
Q 015762 274 NDQVRAVRR--D--NGA-------------------------KIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQI 324 (401)
Q Consensus 274 ~~~V~v~~r--~--tg~-------------------------k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~ 324 (401)
+|.+.|.-| | +++ ...++.+++-......-+.+-+.|--+ +-.+..+|..
T Consensus 109 ~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~h~~~d~i~~~ltG~-~g~f~~riay 187 (448)
T PRK04792 109 PGQYLVSFELVDVVRGQLTGGQGPALSNGELVSSKDHVLDSRVAVISAAQFRQYAHRISDIVYEKLTGE-RGAFLTRIAY 187 (448)
T ss_pred CCeEEEEEEEEEcccccccccccccccccccccccceEEeeeeEEeCHHHHHHHHHHHHHHHHHHhcCC-CccccCEEEE
Confidence 554333322 2 332 234555555555555555555555332 3344555544
Q ss_pred e
Q 015762 325 V 325 (401)
Q Consensus 325 ~ 325 (401)
+
T Consensus 188 v 188 (448)
T PRK04792 188 V 188 (448)
T ss_pred E
Confidence 4
No 172
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.23 E-value=1.8e+02 Score=24.02 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEE
Q 015762 204 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241 (401)
Q Consensus 204 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~i 241 (401)
.++.|+..+ .....|.+.++.|++.|+++.+
T Consensus 10 ~di~iia~G-------~~~~~al~A~~~L~~~Gi~~~v 40 (124)
T PF02780_consen 10 ADITIIAYG-------SMVEEALEAAEELEEEGIKAGV 40 (124)
T ss_dssp SSEEEEEET-------THHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEeeh-------HHHHHHHHHHHHHHHcCCceeE
Confidence 468888887 2568889999999999999885
No 173
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=22.11 E-value=2e+02 Score=29.23 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeC
Q 015762 205 QVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 268 (401)
Q Consensus 205 qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG 268 (401)
+++|++.+. + ..+.+++++||+.|++|+++..+. .. ++ ..+..-.+.+|
T Consensus 334 ~~~~~~~~~-----~---~~~~~~a~~LR~~G~~~~~~~~~~--~~----~~-~~~~~~~~~~~ 382 (392)
T PRK12421 334 GAILAPWGD-----D---PDLLAAIAELRQQGERVVQLLPGD--DG----SS-EPGCDHRLVLQ 382 (392)
T ss_pred ceEEeecCC-----c---HHHHHHHHHHHhCCCEEEEeCCCc--ch----hH-HhCCCeEEEEE
Confidence 567777652 2 236789999999999999987542 11 12 34666666666
No 174
>KOG3102 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=1.5e+02 Score=27.63 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHH
Q 015762 76 LEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYR 155 (401)
Q Consensus 76 l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~ 155 (401)
|.+.+.||.-.--++..+.+..++|...+=+-+++|- +|-++ . |+|-|.-.++.+.|...-.+ +++...
T Consensus 126 Lsr~VvLr~HqI~~fi~~L~~~l~s~~rf~~t~n~~~-iytN~-e------~TRtFi~leitt~~~~~~~~---~i~~vd 194 (269)
T KOG3102|consen 126 LSRNVVLRVHQINSFISMLRQKLQSQKRFLITFNKWE-IYTND-E------HTRTFISLEITTSGLSEISK---QIDAVD 194 (269)
T ss_pred eccceEEEeehhhHHHHHHHHHHhhhhhheEeecceE-EEecc-c------cceeEEEEEechhhHHHHHH---HHHHHH
Confidence 4588999998877888888888887666666666663 55555 2 77889999998866543322 455555
Q ss_pred HHHHHh
Q 015762 156 RIYEEF 161 (401)
Q Consensus 156 ~i~~~l 161 (401)
++++.+
T Consensus 195 ~Vm~~~ 200 (269)
T KOG3102|consen 195 EVMKLH 200 (269)
T ss_pred HHHHHc
Confidence 666544
No 175
>PF14116 YyzF: YyzF-like protein
Probab=21.55 E-value=51 Score=23.20 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.4
Q ss_pred CcccccCCCcceEE
Q 015762 382 TLCFASGKPAKKWT 395 (401)
Q Consensus 382 ~~C~~~g~~a~~~~ 395 (401)
++|-+|+++|+..+
T Consensus 34 ~~C~~C~~~A~Y~V 47 (48)
T PF14116_consen 34 TTCEYCDQPAVYLV 47 (48)
T ss_pred CcchhhCCCceEEe
Confidence 47999999998653
No 176
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=21.54 E-value=73 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.745 Sum_probs=17.8
Q ss_pred eecCHHHHHHHhcC--CCE----EEe-------ecCCC
Q 015762 324 IVKTWDEFVEALGQ--RKM----ILA-------PWCDE 348 (401)
Q Consensus 324 ~~~~~~e~~~~~~~--~~~----~~~-------pwc~~ 348 (401)
.++++++|.+.+.+ |+. ..| +||+.
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~p 42 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPD 42 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHh
Confidence 45788899888874 553 345 89985
No 177
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=21.51 E-value=2.3e+02 Score=29.97 Aligned_cols=112 Identities=21% Similarity=0.322 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHH--HHhCCCEEEEeCccccCCCeEEEEECCCCceeeechh--
Q 015762 218 TQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHW--EMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRG-- 293 (401)
Q Consensus 218 ~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~a--e~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~-- 293 (401)
.+.....-.++++.++. .++..+-+.. +.+.-+... +..+.|+++++.. ..+.+..+.-+
T Consensus 270 ~e~~~~~~~~vAk~f~~-~l~Fi~~d~e--~~~~~~~~~Gl~~~~~~~~~v~~~-------------~~~~Ky~~~~e~~ 333 (493)
T KOG0190|consen 270 FEELRKKFEEVAKKFKG-KLRFILIDPE--SFARVLEFFGLEEEQLPIRAVILN-------------EDGSKYPLEEEEL 333 (493)
T ss_pred HHHHHHHHHHHHHhccc-ceEEEEEChH--HhhHHHHhcCcccccCCeeEEeec-------------cccccccCccccc
Confidence 36788888999999987 4666554332 333333332 2234453333332 22333332222
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHH---HHH---cCeeeecCHHHHHHHhcCCC-E---EEeecCCC
Q 015762 294 ---SLVERVKELLEEVQESLFVAAKQ---RRD---ACIQIVKTWDEFVEALGQRK-M---ILAPWCDE 348 (401)
Q Consensus 294 ---el~~~i~~~l~~~~~~l~~~a~~---~~~---~~~~~~~~~~e~~~~~~~~~-~---~~~pwc~~ 348 (401)
.+..++++.++.- ..-|-|+.. ..+ -.++..++++++. +++++ + .-|||||.
T Consensus 334 ~~~~ie~f~~~~l~Gk-~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv--~de~KdVLvEfyAPWCgH 398 (493)
T KOG0190|consen 334 DQENIESFVKDFLDGK-VKPHLKSQPIPEDNDRSPVKVVVGKNFDDIV--LDEGKDVLVEFYAPWCGH 398 (493)
T ss_pred cHHHHHHHHHHHhcCc-cccccccCCCCcccccCCeEEEeecCHHHHh--hccccceEEEEcCcccch
Confidence 3555555555532 122222221 112 2234448888887 55554 2 45899995
No 178
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=21.49 E-value=86 Score=25.43 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=19.6
Q ss_pred cCeeeecCHHHHHHHhcCC---CEEE----eecCCCh
Q 015762 320 ACIQIVKTWDEFVEALGQR---KMIL----APWCDEE 349 (401)
Q Consensus 320 ~~~~~~~~~~e~~~~~~~~---~~~~----~pwc~~~ 349 (401)
..+..+++ ++|.+.+.+. +.++ +|||+.-
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C 39 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRC 39 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcH
Confidence 45667777 8999888543 4433 6999753
No 179
>PRK04043 tolB translocation protein TolB; Provisional
Probab=21.29 E-value=7.2e+02 Score=25.41 Aligned_cols=123 Identities=12% Similarity=0.035 Sum_probs=65.0
Q ss_pred CCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeE--E
Q 015762 201 VASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQV--R 278 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V--~ 278 (401)
..+.+|+|+|...... .....+.+.-|.+.|...|.--.++........-.+..|..+|+.+.+.-+-....+|.+ .
T Consensus 28 ~~~~~iav~~~~~~~~-~~~~~~~~~ii~~dL~~sg~f~~~~~~~~~~~~~~~~~w~~~g~~~lv~g~~~~~~~~~~~v~ 106 (419)
T PRK04043 28 QKLPKIVVEDASDLND-ANLKKKFFKILVNDLKVSSHFEVSENKDQSSGDINYNELKDKKVDLVFRYSLANKNGNKLSLR 106 (419)
T ss_pred CCcCCEEEecccccCc-cchhHHHHHHHHHhhccCCCceecCcccccCcccChhHHHhcCCCEEEEEEEEECCCCeEEEE
Confidence 3556788888753110 011234566778888888864444433212233457789999999966554343445543 3
Q ss_pred EEECC--CCc-----eeeechhh-HHHHHHHHHHHHHHHHHHHHHH-HHHcCeeeec
Q 015762 279 AVRRD--NGA-----KIDLPRGS-LVERVKELLEEVQESLFVAAKQ-RRDACIQIVK 326 (401)
Q Consensus 279 v~~r~--tg~-----k~~v~~~e-l~~~i~~~l~~~~~~l~~~a~~-~~~~~~~~~~ 326 (401)
++--| +++ +.+++-.+ +-......-++|-+.| .... .+..++..+.
T Consensus 107 ~~l~dv~~~~~~~~~~~~~~~~~~~r~~aH~~~d~i~~~l--~~~~~~f~~r~~~v~ 161 (419)
T PRK04043 107 VKLYDVNTGSLKFEKDYTINSLDRYPFLAHKSAIDINDYL--KAPSIDWMKRKVVFS 161 (419)
T ss_pred EEEEEcCCCCEEeeeEEEccchhhhHHHHHHHHHHHHHHh--CCCCcCceeeEEEEE
Confidence 33333 332 33443334 4444555556565555 2222 4445555543
No 180
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=21.19 E-value=7.5e+02 Score=25.67 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=21.5
Q ss_pred EEEEcCCCCCCHHHHHHHHHHhCCCEEEEeC
Q 015762 238 RANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 268 (401)
Q Consensus 238 rv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG 268 (401)
-+.+|.. .+.|.-++-....|.|+. .||
T Consensus 239 lTKlD~~--a~~G~~ls~~~~~~~Pi~-fig 266 (437)
T PRK00771 239 ITKLDGT--AKGGGALSAVAETGAPIK-FIG 266 (437)
T ss_pred EecccCC--CcccHHHHHHHHHCcCEE-EEe
Confidence 3455654 379999999999999986 555
No 181
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.12 E-value=73 Score=31.20 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=44.7
Q ss_pred EEEEEcCCCCC--ChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccc
Q 015762 206 VIVIPVPYKDA--DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKD 271 (401)
Q Consensus 206 V~Iipi~~~~~--~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE 271 (401)
|-|||+-.+.. ..+++...-.+|.++|.++|+.+.-...++ -.-.+.+.....-+|+. +||.-|
T Consensus 177 VNIIPvIAKaDtisK~eL~~FK~kimsEL~sngv~IYqfPtDd-etva~~N~~mn~~lPFA-VvGSte 242 (406)
T KOG3859|consen 177 VNIIPVIAKADTISKEELKRFKIKIMSELVSNGVQIYQFPTDD-ETVAKANSEMNHSLPFA-VVGSTE 242 (406)
T ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCceeeeccchH-HHHHHHHHHhhcCCcee-EecchH
Confidence 55777643321 235677778899999999999888766654 34456777777889996 567644
No 182
>PRK03202 6-phosphofructokinase; Provisional
Probab=20.59 E-value=8.2e+02 Score=24.20 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHH
Q 015762 223 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKEL 302 (401)
Q Consensus 223 ~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~ 302 (401)
+...++++.|++.+|...+--..+-|+.--..-++ .++|++.+ |+.+.|+. .+...++-.+..++.+.+.
T Consensus 80 ~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e-~~i~vigi--PkTIDNDl-------~gtd~s~Gf~TA~~~~~~~ 149 (320)
T PRK03202 80 EGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTE-HGIPVIGL--PGTIDNDI-------AGTDYTIGFDTALNTAVEA 149 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHh-cCCcEEEe--cccccCCC-------CCCccCcCHHHHHHHHHHH
Confidence 34567888999999999987654435543333332 48887554 67766642 2556677788888888877
Q ss_pred HHHHHHH
Q 015762 303 LEEVQES 309 (401)
Q Consensus 303 l~~~~~~ 309 (401)
++.++.+
T Consensus 150 i~~l~~~ 156 (320)
T PRK03202 150 IDRLRDT 156 (320)
T ss_pred HHHHHHH
Confidence 7765443
No 183
>PTZ00051 thioredoxin; Provisional
Probab=20.36 E-value=1.1e+02 Score=23.64 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=20.7
Q ss_pred eeeecCHHHHHHHhcCCCE----EEeecCCCh
Q 015762 322 IQIVKTWDEFVEALGQRKM----ILAPWCDEE 349 (401)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~----~~~pwc~~~ 349 (401)
+..++|.+++.+.+++++. .-+|||+.-
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C 33 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPC 33 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHH
Confidence 4567899999999987663 446788753
No 184
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=20.25 E-value=5.4e+02 Score=24.80 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHhCCCEEEEeCccccCC--C---eEEEEECCCCceeeechhhHHHHHH
Q 015762 253 YSHWEMKGVPLRIEIGPKDLAN--D---QVRAVRRDNGAKIDLPRGSLVERVK 300 (401)
Q Consensus 253 ~~~ae~~GvP~~iiiG~kE~~~--~---~V~v~~r~tg~k~~v~~~el~~~i~ 300 (401)
-..++..||||+++-+..++-. | ..+|.-.|.|+...-.++.|++.+.
T Consensus 168 paLCrk~~VPY~iVktKaeLG~AIGkKtravVAItD~g~ed~~~l~~lv~~~~ 220 (263)
T PTZ00222 168 PNLCRANKIPYAIVKDMARLGDAIGRKTATCVAITDVNAEDEAALKNLIRSVN 220 (263)
T ss_pred HHHHHhcCCCEEEECCHHHHHHHHCCCCCeEEEEeeCCcccHHHHHHHHHHHH
Confidence 3567789999987766655532 1 2233333445544444444444443
No 185
>PRK14031 glutamate dehydrogenase; Provisional
Probab=20.17 E-value=6.1e+02 Score=26.46 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=60.0
Q ss_pred HHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCC-CeEEEEECC---CCceeeechhhHHHHHHHH
Q 015762 227 ATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAN-DQVRAVRRD---NGAKIDLPRGSLVERVKEL 302 (401)
Q Consensus 227 ~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~-~~V~v~~r~---tg~k~~v~~~el~~~i~~~ 302 (401)
+-+.+|+..|+++.+...+........+....+||+++ |+=+.| |-|++.-.. +......+.+++.+.+++.
T Consensus 326 ~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~----PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~ 401 (444)
T PRK14031 326 DDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYA----PGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSI 401 (444)
T ss_pred HHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEe----ChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHH
Confidence 55777888888877776554455556677778887653 777776 556654321 2233445678888999999
Q ss_pred HHHHHHHHHHHHHHH
Q 015762 303 LEEVQESLFVAAKQR 317 (401)
Q Consensus 303 l~~~~~~l~~~a~~~ 317 (401)
+....++.++.|++.
T Consensus 402 m~~~~~~v~~~~~~~ 416 (444)
T PRK14031 402 MKNIHEACVQYGTEA 416 (444)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998887754
No 186
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=20.08 E-value=3e+02 Score=25.09 Aligned_cols=102 Identities=11% Similarity=0.128 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEE--eCccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015762 223 DACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIE--IGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 300 (401)
Q Consensus 223 ~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~ii--iG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~ 300 (401)
.....++..+...|..+.+|--. ..++. +......++- .+. +.+.+.-...+..|.++++ ...|.+..++.+.
T Consensus 84 ~~L~~va~~~l~~G~sVIvEgv~-l~p~~-~~~~~~~~v~-~i~l~v~d~e~lr~Rl~~R~~~~~--~~~p~~~~~~~~~ 158 (197)
T PRK12339 84 PGINRVIRRALLNGEDLVIESLY-FHPPM-IDENRTNNIR-AFYLYIRDAELHRSRLADRINYTH--KNSPGKRLAEHLP 158 (197)
T ss_pred HHHHHHHHHHHHcCCCEEEEecC-cCHHH-HHHHHhcCeE-EEEEEeCCHHHHHHHHHHHhhccc--CCCcHHHHHHHHH
Confidence 34556777777889999999743 34444 3333334543 333 3333322233333333332 2334455666665
Q ss_pred HHHHHHHHHHHHHHHHHHHcCeeee--cCHHHHHH
Q 015762 301 ELLEEVQESLFVAAKQRRDACIQIV--KTWDEFVE 333 (401)
Q Consensus 301 ~~l~~~~~~l~~~a~~~~~~~~~~~--~~~~e~~~ 333 (401)
++ ..||+-|-++|++. .|-.+ .++++-..
T Consensus 159 ~i-r~i~~~l~~~a~~~---~i~~i~~~~~~~~~~ 189 (197)
T PRK12339 159 EY-RTIMDYSIADARGY---NIKVIDTDNYREARN 189 (197)
T ss_pred HH-HHHHHHHHHHHHHc---CCCeecCccHHHHHH
Confidence 54 45999999999887 44433 55666544
No 187
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=20.07 E-value=1e+02 Score=22.58 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=26.6
Q ss_pred hCCCEEEEeCccccCCCeEEEEECCC-CceeeechhhHH
Q 015762 259 KGVPLRIEIGPKDLANDQVRAVRRDN-GAKIDLPRGSLV 296 (401)
Q Consensus 259 ~GvP~~iiiG~kE~~~~~V~v~~r~t-g~k~~v~~~el~ 296 (401)
.|.|+-|. .=+-.+++.+|..+++ +++..||+.+|.
T Consensus 21 ~G~pV~Ie--~vde~~~tA~V~~l~~p~~~~~Vpv~~L~ 57 (58)
T TIGR02861 21 KGVPVYIE--HVDEQSGTARVYSLDNPGKEQDVPVNDLE 57 (58)
T ss_pred CCEEEEEE--EEcCCCCeEEEEECCCCCcEEEEEHHHcc
Confidence 36675443 3345678999999984 889999998874
Done!