Query 015762
Match_columns 401
No_of_seqs 267 out of 1756
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:14:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hvc_A Bifunctional glutamate/ 100.0 2E-100 7E-105 790.3 39.5 401 1-401 44-519 (519)
2 3ial_A Prolyl-tRNA synthetase; 100.0 3.2E-99 1E-103 779.9 35.4 394 1-401 37-518 (518)
3 1hc7_A Prolyl-tRNA synthetase; 100.0 4E-95 1.4E-99 748.3 39.3 388 1-401 27-477 (477)
4 1nj1_A PROR, proline-tRNA synt 100.0 3.3E-91 1.1E-95 723.1 37.5 386 1-401 53-501 (501)
5 1nj8_A Proline-tRNA synthetase 100.0 3.4E-87 1.2E-91 686.9 36.4 375 1-401 20-459 (459)
6 3uh0_A Threonyl-tRNA synthetas 100.0 2.5E-58 8.4E-63 472.3 23.0 287 6-305 52-458 (460)
7 2i4l_A Proline-tRNA ligase; al 100.0 1.6E-54 5.4E-59 445.0 23.8 285 5-299 54-457 (458)
8 1qf6_A THRRS, threonyl-tRNA sy 100.0 3.1E-54 1.1E-58 458.6 25.4 281 6-305 259-634 (642)
9 3a32_A Probable threonyl-tRNA 100.0 1.1E-53 3.8E-58 440.1 27.8 297 6-315 37-458 (471)
10 1evl_A Threonyl-tRNA synthetas 100.0 1.8E-53 6.1E-58 430.4 24.5 281 5-304 17-392 (401)
11 2j3l_A Prolyl-tRNA synthetase; 100.0 3.5E-53 1.2E-57 446.3 27.7 287 6-304 35-565 (572)
12 1nyr_A Threonyl-tRNA synthetas 100.0 8.5E-52 2.9E-56 441.0 23.7 282 7-304 260-640 (645)
13 1ati_A Glycyl-tRNA synthetase; 100.0 5.8E-51 2E-55 422.3 23.1 292 4-303 25-503 (505)
14 2zt5_A Glycyl-tRNA synthetase; 100.0 4.2E-50 1.4E-54 428.1 24.2 307 4-336 87-670 (693)
15 1htt_A Histidyl-tRNA synthetas 100.0 4.9E-48 1.7E-52 392.9 28.1 281 1-303 1-422 (423)
16 1h4v_B Histidyl-tRNA synthetas 100.0 2.8E-47 9.6E-52 387.1 30.1 279 3-303 2-420 (421)
17 4e51_A Histidine--tRNA ligase; 100.0 8.8E-47 3E-51 388.0 28.5 279 2-303 30-458 (467)
18 1g5h_A Mitochondrial DNA polym 100.0 1.5E-48 5.2E-53 398.7 10.1 292 6-308 49-442 (454)
19 1qe0_A Histidyl-tRNA synthetas 100.0 1.8E-46 6E-51 381.0 24.4 276 4-300 2-419 (420)
20 1wu7_A Histidyl-tRNA synthetas 100.0 3E-46 1E-50 381.1 25.3 275 3-304 5-426 (434)
21 3ikl_A DNA polymerase subunit 100.0 1.8E-46 6.3E-51 379.9 22.2 274 5-305 90-449 (459)
22 4g85_A Histidine-tRNA ligase, 100.0 2.3E-44 7.9E-49 374.8 21.8 277 4-304 67-514 (517)
23 4g84_A Histidine--tRNA ligase, 100.0 8.7E-44 3E-48 365.5 22.6 277 4-304 14-461 (464)
24 3net_A Histidyl-tRNA synthetas 100.0 1.7E-42 5.7E-47 356.2 21.6 279 2-303 10-464 (465)
25 3lc0_A Histidyl-tRNA synthetas 100.0 1.5E-41 5.1E-46 347.7 24.4 271 1-295 26-446 (456)
26 2dq3_A Seryl-tRNA synthetase; 100.0 3.6E-35 1.2E-39 297.6 9.9 194 7-210 161-423 (425)
27 3vbb_A Seryl-tRNA synthetase, 100.0 6.9E-35 2.4E-39 298.8 12.0 205 7-214 190-473 (522)
28 2dq0_A Seryl-tRNA synthetase; 100.0 7.4E-35 2.5E-39 297.1 10.7 190 6-205 181-438 (455)
29 1wle_A Seryl-tRNA synthetase; 100.0 2.4E-34 8.1E-39 295.4 12.9 197 7-209 208-473 (501)
30 1ses_A Seryl-tRNA synthetase; 100.0 1.4E-34 4.9E-39 292.7 10.3 190 7-205 155-412 (421)
31 3qne_A Seryl-tRNA synthetase, 100.0 8.6E-34 2.9E-38 288.7 9.7 200 6-213 173-446 (485)
32 3lss_A Seryl-tRNA synthetase; 100.0 1.2E-32 4E-37 280.6 13.2 200 6-213 196-471 (484)
33 3err_A Fusion protein of micro 100.0 3.2E-32 1.1E-36 282.2 13.5 189 7-204 264-520 (536)
34 2cja_A Seryl-tRNA synthetase; 100.0 1.2E-31 4E-36 276.4 10.0 162 2-166 215-408 (522)
35 3od1_A ATP phosphoribosyltrans 100.0 4.3E-30 1.5E-34 258.8 17.4 148 4-162 10-157 (400)
36 1z7m_A ATP phosphoribosyltrans 100.0 7.2E-29 2.5E-33 245.4 14.9 152 3-165 21-173 (344)
37 3rac_A Histidine-tRNA ligase; 99.9 3.4E-27 1.2E-31 235.7 13.6 148 4-162 23-178 (373)
38 3mf2_A BLL0957 protein; aminoa 99.9 3.2E-22 1.1E-26 194.5 11.7 155 4-166 50-228 (346)
39 1usy_A ATP phosphoribosyltrans 99.8 2.7E-19 9.2E-24 171.6 8.3 115 22-162 4-121 (275)
40 1v95_A Nuclear receptor coacti 99.7 1.2E-17 4.1E-22 141.0 10.8 102 201-309 6-111 (130)
41 3dsq_A Pyrrolysyl-tRNA synthet 99.7 2E-16 6.8E-21 152.4 10.6 133 19-162 71-203 (288)
42 3qtc_A Pyrrolysyl-tRNA synthet 99.4 2.5E-12 8.4E-17 124.0 13.1 130 21-166 79-210 (290)
43 1nnh_A Asparaginyl-tRNA synthe 99.2 4.8E-11 1.6E-15 115.2 11.5 124 14-160 11-139 (294)
44 1x54_A Asparaginyl-tRNA synthe 98.9 6.5E-09 2.2E-13 105.3 13.5 119 16-159 133-252 (434)
45 1wyd_A Hypothetical aspartyl-t 98.9 6.1E-09 2.1E-13 105.4 13.2 119 16-159 132-251 (429)
46 1eov_A ASPRS, aspartyl-tRNA sy 98.9 9.6E-09 3.3E-13 105.5 12.5 118 17-159 177-297 (487)
47 1n9w_A Aspartyl-tRNA synthetas 98.8 9.9E-09 3.4E-13 103.6 10.2 119 16-159 123-243 (422)
48 3a74_A Lysyl-tRNA synthetase; 98.7 6.3E-08 2.2E-12 99.5 13.3 122 17-161 173-295 (493)
49 1e1o_A Lysyl-tRNA synthetase, 98.6 1.9E-07 6.4E-12 96.2 13.0 122 17-161 182-304 (504)
50 3a5y_A GENX, putative lysyl-tR 98.6 2.8E-07 9.5E-12 90.6 12.3 122 17-157 35-158 (345)
51 2xgt_A Asparaginyl-tRNA synthe 98.3 1.8E-06 6E-11 87.5 10.8 120 16-160 130-250 (435)
52 3nem_A Aspartyl-tRNA synthetas 98.3 4.6E-06 1.6E-10 84.4 13.0 119 17-160 136-257 (438)
53 3bju_A Lysyl-tRNA synthetase; 98.3 4.5E-06 1.5E-10 86.3 12.9 122 17-161 175-297 (521)
54 4ex5_A Lysine--tRNA ligase; st 98.2 7.8E-06 2.7E-10 84.3 12.9 122 17-161 203-325 (529)
55 1l0w_A Aspartyl-tRNA synthetas 98.1 2.5E-05 8.4E-10 81.7 12.7 123 17-162 143-266 (580)
56 3m4p_A Ehasnrs, asparaginyl-tR 98.0 2.5E-05 8.6E-10 79.4 12.1 119 17-160 155-274 (456)
57 1c0a_A Aspartyl tRNA synthetas 98.0 2.9E-05 9.9E-10 81.3 12.5 122 17-161 137-259 (585)
58 4ah6_A Aspartate--tRNA ligase, 98.0 2.6E-05 9E-10 81.7 11.7 119 17-159 147-267 (617)
59 3l4g_A Phenylalanyl-tRNA synth 98.0 1.8E-05 6.3E-10 81.0 9.9 141 17-162 223-399 (508)
60 3i7f_A Aspartyl-tRNA synthetas 97.9 3.9E-05 1.3E-09 79.3 10.0 120 17-160 243-364 (548)
61 1b7y_A Phers, protein (phenyla 97.6 0.0004 1.4E-08 68.1 12.3 132 20-161 102-244 (350)
62 2du3_A O-phosphoseryl-tRNA syn 97.5 0.00024 8.2E-09 73.1 9.4 78 79-162 180-258 (534)
63 2rhq_A Phenylalanyl-tRNA synth 97.5 0.00065 2.2E-08 65.1 11.0 125 20-161 54-183 (294)
64 2du7_A O-phosphoseryl-tRNA syn 97.2 0.0013 4.5E-08 67.7 10.7 139 19-162 57-270 (549)
65 2odr_B Phosphoseryl-tRNA synth 96.7 0.008 2.8E-07 62.6 11.4 138 19-162 65-277 (648)
66 2odr_A Phosphoseryl-tRNA synth 96.7 0.0082 2.8E-07 62.6 11.4 138 19-162 65-277 (665)
67 2odr_D Phosphoseryl-tRNA synth 96.7 0.0085 2.9E-07 62.6 11.4 137 20-162 66-277 (685)
68 2odr_C Phosphoseryl-tRNA synth 96.6 0.0082 2.8E-07 62.9 10.5 138 19-162 65-277 (701)
69 3pco_A Phenylalanyl-tRNA synth 96.4 0.0042 1.4E-07 60.2 6.2 107 18-141 106-216 (327)
70 3l4g_B Phenylalanyl-tRNA synth 95.9 0.044 1.5E-06 57.3 11.7 129 21-162 393-523 (589)
71 3ica_A Phenylalanyl-tRNA synth 94.1 0.13 4.4E-06 46.5 7.7 136 21-165 6-154 (213)
72 3ig2_A Phenylalanyl-tRNA synth 93.6 0.16 5.3E-06 46.0 7.4 136 21-165 6-154 (213)
73 2rhq_B Phenylalanyl-tRNA synth 93.6 0.52 1.8E-05 51.0 12.7 129 20-162 494-633 (795)
74 1b7y_B Phers, protein (phenyla 92.8 0.44 1.5E-05 51.4 10.5 122 20-162 490-621 (785)
75 3cmq_A Phenylalanyl-tRNA synth 92.4 0.86 2.9E-05 45.4 11.3 101 20-138 49-162 (415)
76 3pco_B Phenylalanyl-tRNA synth 66.1 11 0.00039 40.5 7.5 85 24-118 494-579 (795)
77 3zzx_A Thioredoxin; oxidoreduc 65.6 2.4 8.1E-05 33.2 1.6 27 322-348 2-34 (105)
78 1m5w_A Pyridoxal phosphate bio 60.5 16 0.00056 33.3 6.3 64 201-268 86-155 (243)
79 3gk0_A PNP synthase, pyridoxin 53.9 15 0.00052 34.1 5.0 63 201-267 114-182 (278)
80 3d6i_A Monothiol glutaredoxin- 46.6 14 0.00049 28.0 3.3 28 321-348 1-35 (112)
81 3o6c_A PNP synthase, pyridoxin 46.6 12 0.00041 34.5 3.1 63 201-267 85-151 (260)
82 2j23_A Thioredoxin; immune pro 40.8 18 0.00062 28.1 3.1 28 321-348 16-47 (121)
83 1r26_A Thioredoxin; redox-acti 36.6 14 0.00047 29.4 1.7 29 320-348 19-51 (125)
84 3iv4_A Putative oxidoreductase 36.3 21 0.00071 28.6 2.7 33 318-350 4-40 (112)
85 1gh2_A Thioredoxin-like protei 35.8 16 0.00056 27.5 1.9 28 321-348 2-35 (107)
86 3m9j_A Thioredoxin; oxidoreduc 35.0 19 0.00064 26.8 2.2 27 322-348 2-34 (105)
87 2ibo_A Hypothetical protein SP 33.8 81 0.0028 24.7 5.8 38 204-245 5-42 (104)
88 3f3q_A Thioredoxin-1; His TAG, 29.8 24 0.00083 26.8 2.1 27 322-348 8-38 (109)
89 3jrn_A AT1G72930 protein; TIR 29.7 76 0.0026 27.4 5.4 52 203-261 8-60 (176)
90 3idv_A Protein disulfide-isome 28.8 73 0.0025 27.5 5.4 106 220-348 49-161 (241)
91 2ec4_A FAS-associated factor 1 28.4 62 0.0021 27.8 4.6 77 226-310 81-174 (178)
92 1jwq_A N-acetylmuramoyl-L-alan 27.7 1.4E+02 0.0046 25.6 6.7 53 219-271 28-83 (179)
93 2oe3_A Thioredoxin-3; electron 27.2 21 0.00071 27.6 1.2 28 321-348 13-44 (114)
94 3li6_A Calcium-binding protein 26.8 1.4E+02 0.0047 19.6 5.8 50 287-336 14-63 (66)
95 4euy_A Uncharacterized protein 26.2 7.2 0.00025 29.6 -1.7 26 323-348 3-32 (105)
96 1a0r_P Phosducin, MEKA, PP33; 25.1 66 0.0022 29.1 4.4 30 320-349 112-148 (245)
97 3ira_A Conserved protein; meth 25.0 2.6E+02 0.0088 23.6 8.0 86 227-316 66-159 (173)
98 1lxj_A YBL001C, hypothetical 1 24.3 84 0.0029 24.6 4.3 84 204-303 8-102 (104)
99 1vk8_A Hypothetical protein TM 24.1 1.1E+02 0.0038 24.1 5.0 42 197-244 13-54 (106)
100 2vim_A Thioredoxin, TRX; thior 23.8 38 0.0013 24.8 2.2 26 323-348 2-33 (104)
101 1lxn_A Hypothetical protein MT 23.6 84 0.0029 24.3 4.1 38 204-244 4-41 (99)
102 3pwf_A Rubrerythrin; non heme 23.4 1.4E+02 0.0048 25.4 5.9 34 304-348 113-146 (170)
103 2wz9_A Glutaredoxin-3; protein 22.6 34 0.0012 27.8 1.8 34 315-348 7-46 (153)
104 1yqh_A DUF77, IG hypothetical 22.6 1.3E+02 0.0044 23.8 5.1 37 204-244 10-46 (109)
105 1ti3_A Thioredoxin H, PTTRXH1; 22.6 47 0.0016 24.8 2.5 29 320-348 4-40 (113)
106 3ff5_A PEX14P, peroxisomal bio 22.3 75 0.0026 22.0 3.1 36 305-340 7-42 (54)
107 3qay_A Endolysin; amidase A/B 22.2 2.3E+02 0.0077 24.1 7.1 124 219-357 29-160 (180)
108 3h16_A TIR protein; bacteria T 22.1 17 0.00057 30.4 -0.3 37 203-245 20-56 (154)
No 1
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-100 Score=790.35 Aligned_cols=401 Identities=52% Similarity=1.014 Sum_probs=370.2
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+|+++++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|++.|+.+|++++
T Consensus 44 lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l 123 (519)
T 4hvc_A 44 MIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPI 123 (519)
T ss_dssp CEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEE
T ss_pred CeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccce
Confidence 57888999999999999999999999999999999999999999999999988899999999999999998875566789
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
+||||+|++++++|++|++||++||+|++|||+|||||.+|++||+|+|||+|+|+|++|+++++|++| ++++|.++
T Consensus 124 ~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i 203 (519)
T 4hvc_A 124 AIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQV 203 (519)
T ss_dssp EECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred HHHhCcccEEecCCCCcccc------------------------------c----h------------------------
Q 015762 158 YEEFLAVPVIKGKKSELENS------------------------------K----F------------------------ 179 (401)
Q Consensus 158 ~~~l~~ipv~~g~k~~~e~f------------------------------n----F------------------------ 179 (401)
|+.++++|+..+.++++++| + |
T Consensus 204 ~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~~~~Gi~ 283 (519)
T 4hvc_A 204 YEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLT 283 (519)
T ss_dssp HHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSTTCEEECEEEEEEEE
T ss_pred HHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeecccccccchhhhhcCcEEeccccCCCEEEEEEccccHH
Confidence 99986799988777766654 0 1
Q ss_pred -HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCC----CChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHH
Q 015762 180 -VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKD----ADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYS 254 (401)
Q Consensus 180 -Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~----~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~ 254 (401)
|+|++|+++|+|++|++||+++||+||+|||++.++ ..++++.++|.+|++.|+++||||++|++++.++|+||+
T Consensus 284 ~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 284 TRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp THHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred HHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 999999999999999999999999999999998421 112568899999999999999999999997558999999
Q ss_pred HHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHH
Q 015762 255 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEA 334 (401)
Q Consensus 255 ~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~ 334 (401)
+|+++|||++|+||++|+++|+|+|++|++|++..|+++++++.|.++|++||++||+||++++++||+.++|||||+++
T Consensus 364 ~ael~GiP~~ivIG~kele~g~V~vr~R~tgeq~~v~~~el~~~l~~ll~~i~~~l~~~a~~~~~~~~~~~~~~~~~~~~ 443 (519)
T 4hvc_A 364 HWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKI 443 (519)
T ss_dssp HHHHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCSHHHHHHH
T ss_pred HHHhcCCCEEEEECchhhcCCeEEEEECCCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEeecCCChhHHHHHHHhhc--------cCcCCCeeecccCCCCC-CCCCCcccccCCCcceEEEEeecC
Q 015762 335 LGQRKMILAPWCDEEEVEKDVKARTK--------GEMGAAKTLCSPLEQPE-VPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 335 ~~~~~~~~~pwc~~~~~e~~ik~~~~--------~~~~~~~~~c~p~~~~~-~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
|++||||++||||+.+||++||++|+ +.|||||+|||||+++. ...+++|++||+||+.|++|||||
T Consensus 444 ~~~~~~~~~~w~~~~~~e~~ik~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~a~~~~~~~~~y 519 (519)
T 4hvc_A 444 LDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNPAKYYTLFGRSY 519 (519)
T ss_dssp HHTTCEEEEEECCCHHHHHHHHHHHHC----------CCCEEEEEESSCSSCCCTTCBCCC--CBCCEEEEEECBC
T ss_pred HhcCCEEEEeccCCHHHHHHHHHHhccccccccccccCCceeeeccCCCcccCCCCCcccccCCcceEEEEEEEeC
Confidence 99999999999999999999999985 23589999999999974 334568999999999999999999
No 2
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.2e-99 Score=779.93 Aligned_cols=394 Identities=32% Similarity=0.565 Sum_probs=367.1
Q ss_pred CCcc-cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCc
Q 015762 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~ 79 (401)
|+|| ++++|+++|+|.|+++|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+++|+++++++
T Consensus 37 lid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~ 116 (518)
T 3ial_A 37 LVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEER 116 (518)
T ss_dssp CEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEE
T ss_pred CcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcc
Confidence 5677 899999999999999999999999999999999999999999999998889999999999999999886666789
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRR 156 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~ 156 (401)
++||||+|++++.+|++|++||++||+|+||||+|||||.+|++||+|+|||+|+|+|+||++++++++| ++++|.+
T Consensus 117 l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~ 196 (518)
T 3ial_A 117 LALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDT 196 (518)
T ss_dssp EEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999899999999999999999999999999988 8889999
Q ss_pred HH-HHhCcccEEecCCCCcccc-----------------------------ch---------------------------
Q 015762 157 IY-EEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 179 (401)
Q Consensus 157 i~-~~l~~ipv~~g~k~~~e~f-----------------------------nF--------------------------- 179 (401)
+| +.| ++|+..+.++++++| +|
T Consensus 197 i~~~~L-Glp~~~~~~~~~e~~~gA~yt~~iE~~~pdgr~ie~gt~~~Lg~~~s~rf~i~y~d~~g~~~~~h~~~~G~~~ 275 (518)
T 3ial_A 197 IFSDEL-CFKGQKLRRVCWDRFPGADYSEVSDVVMPCGRVLQTAGIHNLGQRFSSTFDILYANKANESVHPYLTCAGIST 275 (518)
T ss_dssp HHTTTT-CCCCEEEEECGGGCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCCEECTTCCEECCEEEEEEEET
T ss_pred HHHHhc-CCcEEeeecChhhccCCCccceEEEEEcCCCCEEEEeceecccchhhhhcCcEEECCCCCEeeeEEeccchHH
Confidence 99 666 599887777666554 11
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCC----ChhhHHHHHHHHHHHHhhC-CCEEEEcCCCCCCHHHHHH
Q 015762 180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDA----DTQGIFDACTATVEKLCEA-GIRANSDFRDNYSPGWKYS 254 (401)
Q Consensus 180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~----~~~~~~~~a~~l~~~Lr~~-Girv~iD~~~~~s~g~k~~ 254 (401)
|+|++|+|+|+|++|++||+++||+||+|||+..+++ +.+++.++|.+|++.|+++ ||||.+|++++.++|+||+
T Consensus 276 R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~ 355 (518)
T 3ial_A 276 RVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLY 355 (518)
T ss_dssp HHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHH
T ss_pred HHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHH
Confidence 9999999999999999999999999999999986531 1156889999999999999 9999999994369999999
Q ss_pred HHHHhCCCEEEEeCccccCCCeEEEEECCCCc--eeeechhhH---------------HHHHHHHHHHHHHHHHHHHHHH
Q 015762 255 HWEMKGVPLRIEIGPKDLANDQVRAVRRDNGA--KIDLPRGSL---------------VERVKELLEEVQESLFVAAKQR 317 (401)
Q Consensus 255 ~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~--k~~v~~~el---------------~~~i~~~l~~~~~~l~~~a~~~ 317 (401)
+|+++|||++|+||++|+++|+|+|++|++++ +..|+++++ ++.|.++|++||++||+||+++
T Consensus 356 ~ael~GvP~~i~vG~ke~e~g~V~vr~Rd~~~~~k~~v~~~el~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~a~~~ 435 (518)
T 3ial_A 356 YYELKGVPLRIEVGQRDLANGQCIVVPRDVGKDQKRVIPITEVMKVSSHTTENHELVVKNVIKDELDAYKARLKEKAFAF 435 (518)
T ss_dssp HHHHTTCSEEEEEEHHHHHTTEEEEEETTTCGGGCEEEEHHHHHCCC---------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECcchhhCCEEEEEECCCCccceeEeeHHHHhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999 8999999999999999999999
Q ss_pred HHcCeeeecCHHHHHHHhcC-CCEEEeecCCCh----hHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcc
Q 015762 318 RDACIQIVKTWDEFVEALGQ-RKMILAPWCDEE----EVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAK 392 (401)
Q Consensus 318 ~~~~~~~~~~~~e~~~~~~~-~~~~~~pwc~~~----~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~ 392 (401)
+++||+.++|||||+++|++ ||||++||||+. +||++||++| |||+|||||+++. ..+.+|++||+||+
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~~~~-----~~~~~~~p~~~~~-~~~~~c~~~g~~a~ 509 (518)
T 3ial_A 436 HNSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDAC-----SAEIRGHNPDENV-LPGEVCALSGKPAV 509 (518)
T ss_dssp HHHTEEECSSHHHHHHHHHHTCSEEEEEESCSSGGGHHHHHHHHHHH-----SCEEEEECTTSCC-CTTCBCTTTCSBCS
T ss_pred HHhCEEEcCCHHHHHHHHhcCCCEEEEEecCCCccchHHHHHHHHHh-----CCeEeccccccCC-CCCCeeeccCCcce
Confidence 99999999999999999976 589999999999 9999999999 9999999999854 24557999999999
Q ss_pred eEEEEeecC
Q 015762 393 KWTYWGRSY 401 (401)
Q Consensus 393 ~~~~~~rsY 401 (401)
.|++|||||
T Consensus 510 ~~~~~~~~y 518 (518)
T 3ial_A 510 CYMYCAKSY 518 (518)
T ss_dssp EEEEEECBC
T ss_pred EEEEEEEeC
Confidence 999999999
No 3
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=4e-95 Score=748.31 Aligned_cols=388 Identities=42% Similarity=0.784 Sum_probs=353.1
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+++++++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+|+|++++++++
T Consensus 27 li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l 106 (477)
T 1hc7_A 27 LADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPL 106 (477)
T ss_dssp SEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEE
T ss_pred CeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeE
Confidence 46778899999999999999999999999999999999999999999999988899999999999999999866667999
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRI 157 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i 157 (401)
+||||+|++++++|++|++||++||+|+||||+|||||.+ ++||+|+|||+|+|+|++|++++++++| ++++|.++
T Consensus 107 ~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i 185 (477)
T 1hc7_A 107 AVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARL 185 (477)
T ss_dssp EECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999966 5699999999999999999999999999 66779999
Q ss_pred H-HHhCcccEEecCCCCcccc-----------------------------ch---------------------------H
Q 015762 158 Y-EEFLAVPVIKGKKSELENS-----------------------------KF---------------------------V 180 (401)
Q Consensus 158 ~-~~l~~ipv~~g~k~~~e~f-----------------------------nF---------------------------R 180 (401)
| +.++ +|+..+.++++++| +| |
T Consensus 186 ~~~~Lg-l~~~~~~~~~~e~~~g~~~~~~ie~~~~dgr~~~~gt~~~lg~~~s~~~g~~y~~~~G~~~~~~~~~~GigeR 264 (477)
T 1hc7_A 186 AREYAA-IPVIEGLKTEKEKFAGAVYTTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWR 264 (477)
T ss_dssp HHHHHC-CCCEEEECCTTTSCTTSSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEETH
T ss_pred HHHhcC-CeEEEEeCChHHhcCCcccceEEEEEcCCCcEEEEeeeEEcccccccccCeEEECCCCCEEeeeEeeccHHHH
Confidence 9 6775 89877776655554 11 9
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCC-CCCCHHHHHHHHHHh
Q 015762 181 QIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR-DNYSPGWKYSHWEMK 259 (401)
Q Consensus 181 li~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~-~~~s~g~k~~~ae~~ 259 (401)
+|++|+++|+|++|++||+++||+||+|+|++.++ +++++.++|.+|++.|+++|++|++|++ + .++|+||++|+++
T Consensus 265 li~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~-~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~-~s~g~k~~~a~~~ 342 (477)
T 1hc7_A 265 FIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDE-SRERVLEAAQGLRQALLAQGLRVHLDDRDQ-HTPGYKFHEWELK 342 (477)
T ss_dssp HHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTT-THHHHHHHHHHHHHHHHHTTCCEEECCCSS-SCHHHHHHHHHHT
T ss_pred HHHHHHHHhCccccccCCcccCCceEEEEEcCCcc-hHHHHHHHHHHHHHHHHhCCEEEEEeCCCC-CCHHHHHHHHhhc
Confidence 99999999999999999999999999999997432 1126889999999999999999999998 6 5999999999999
Q ss_pred CCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcCCC
Q 015762 260 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRK 339 (401)
Q Consensus 260 GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~ 339 (401)
|+|++|+||++|+++|+|+|++|+ ++|..|+++++++.|.+++++||++||+||++++++||+.++|||||+++|+ ||
T Consensus 343 G~p~~iiiG~~el~~~~V~vr~r~-~eq~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~ 420 (477)
T 1hc7_A 343 GVPFRVELGPKDLEGGQAVLASRL-GGKETLPLAALPEALPGKLDAFHEELYRRALAFREDHTRKVDTYEAFKEAVQ-EG 420 (477)
T ss_dssp TCSEEEEECHHHHHTTEEEEEETT-SCCCEEEGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECSSHHHHHHHTT-TS
T ss_pred CCCEEEEECcchhcCCEEEEEEec-CceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEECCCHHHHHHHHh-CC
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999 88
Q ss_pred EEEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcce--EEEEeecC
Q 015762 340 MILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKK--WTYWGRSY 401 (401)
Q Consensus 340 ~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~--~~~~~rsY 401 (401)
||++||||+.+||++||++| |||+|||||+++.. .+ +|++||+||+. |++|||||
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p~~~~~~-~~-~c~~~~~~~~~~~~~~~~~~y 477 (477)
T 1hc7_A 421 FALAFHCGDKACERLIQEET-----TATTRCVPFEAEPE-EG-FCVRCGRPSAYGKRVVFAKAY 477 (477)
T ss_dssp EEEECCCCCHHHHHHHHHHH-----CCEEEEEESSSCCC-CC-BCTTTCCBCCTTSCEEEECBC
T ss_pred EEEEecCCCHHHHHHHHHHh-----CCceeecccccccC-CC-CCCCCCCcccceeEEEEEeeC
Confidence 99999999999999999999 99999999998753 34 59999999999 99999999
No 4
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=3.3e-91 Score=723.09 Aligned_cols=386 Identities=35% Similarity=0.652 Sum_probs=356.9
Q ss_pred CCcc-cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCc
Q 015762 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~ 79 (401)
|+++ ++++|+++|+|.|+++|++|++++++.+++ ||++|+||+|++.++|.+++||+++|.+|||+|+++|+++++++
T Consensus 53 lid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~ 131 (501)
T 1nj1_A 53 IIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRK 131 (501)
T ss_dssp CEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEE
T ss_pred CccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCe
Confidence 4566 789999999999999999999999999999 99999999999999998889999999999999999875555689
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhhe-eccceeecCChhhHHHH---HHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDE---ILELYR 155 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e---il~~~~ 155 (401)
++||||+|++++++|++|+.||++||+|+||||+|||||.++|+||+|+|||+ |+|+|++|++++++++| ++++|.
T Consensus 132 l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~ 211 (501)
T 1nj1_A 132 LALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYK 211 (501)
T ss_dssp EEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965488999999999 99999999999999988 799999
Q ss_pred HHHHHhCcccEEecCCCCcccc-------------------------c---------------------------h----
Q 015762 156 RIYEEFLAVPVIKGKKSELENS-------------------------K---------------------------F---- 179 (401)
Q Consensus 156 ~i~~~l~~ipv~~g~k~~~e~f-------------------------n---------------------------F---- 179 (401)
++|+.|+ +|+..+.++..++| + |
T Consensus 212 ~i~~~Lg-l~~~~~~~~~~e~~~~a~~~~die~~l~~g~~~ei~t~~~lg~~~a~~~~~ry~~~~g~~~~~h~~g~Gige 290 (501)
T 1nj1_A 212 EFFNSLG-IPYLITRRPPWDKFPGSEYTVAFDTLMPDGKTLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSD 290 (501)
T ss_dssp HHHHHHT-CCCEEEECCTTTSCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEECT
T ss_pred HHHHHCC-CeEEEEeCCchhhcCCcccceEEEEEcCCCCEEEEEEEEeccccchhhcCeEEECCCCCEEeeeeccccHHH
Confidence 9999886 89866655544433 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEc-CCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHH
Q 015762 180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPV-PYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 258 (401)
Q Consensus 180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi-~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~ 258 (401)
|+|++|+++|+|++|++||++++|+||+|+|+ ..++ .++..++|.+|++.|+++|++|++|+++ .++|+||++|++
T Consensus 291 Rli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~--~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~s~g~k~~~a~~ 367 (501)
T 1nj1_A 291 RVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA--AEEVMEACRELRSRLEAAGFRVHLDDRD-IRAGRKYYEWEM 367 (501)
T ss_dssp HHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSS--HHHHHHHHHHHHHHHHTTTCCEEECCCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCcccCccCCccccCceEEEEEeccCCc--hHHHHHHHHHHHHHHHhCCCEEEEECCC-CCHHHHHHHHHh
Confidence 99999999999999999999999999999999 5211 0368899999999999999999999987 599999999999
Q ss_pred hCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcC-
Q 015762 259 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQ- 337 (401)
Q Consensus 259 ~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~- 337 (401)
+|+|++|+||++|+++|+|+|++|++++|..|+++++++.|.+++++||++||++|++++++||+.++|||||+++|++
T Consensus 368 ~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 447 (501)
T 1nj1_A 368 RGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEK 447 (501)
T ss_dssp EECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHHHHHHHHHHHHHHHHTTEEECSSHHHHHHHHHHH
T ss_pred cCCCEEEEECcchhhCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcCCHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCEEEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 338 RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 338 ~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
||||++||||+.+||++||++| |||+|||| + +. .+ +|++||+||+.|++|||||
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~p-~-~~--~~-~c~~~~~~~~~~~~~~~~y 501 (501)
T 1nj1_A 448 RGIISFMWCGEEECGMDVEEKV-----RVDILGIQ-E-EG--SG-TCINCGREAPYRAYLARTY 501 (501)
T ss_dssp CSEEEEEECCCHHHHHHHHHHH-----TCEEEEEE-E-CS--CC-BCTTTCSBCCEEEEEECBC
T ss_pred CCEEEEecCCCHHHHHHHHHHh-----CCceeccC-C-CC--CC-cCcCcCCchheEEEEEeeC
Confidence 7899999999999999999999 99999999 4 32 34 5999999999999999999
No 5
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=3.4e-87 Score=686.86 Aligned_cols=375 Identities=33% Similarity=0.639 Sum_probs=350.2
Q ss_pred CCcc-cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCc
Q 015762 1 MIEY-YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~-~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~ 79 (401)
|+++ ++++|+++|+|.|+.+|++|++++++.++++||++|+||+|++.++|.+++||+++|.+|||+|+|+|+++++++
T Consensus 20 li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~ 99 (459)
T 1nj8_A 20 IYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVK 99 (459)
T ss_dssp SCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEE
T ss_pred CccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCe
Confidence 5677 899999999999999999999999999999999999999999999998899999999999999999986556689
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhhe-eccceeecCChhhHHHH---HHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFL-WQEGHTAFATKSEADDE---ILELYR 155 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~-q~e~~~~~~~~~~a~~e---il~~~~ 155 (401)
++||||+|++++++|++|++||++||+|+||||+|||||.++|+||+|+|||+ |+|+|++|++.++|++| ++++|.
T Consensus 100 l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~ 179 (459)
T 1nj8_A 100 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYK 179 (459)
T ss_dssp EEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999954388999999999 99999999999999998 999999
Q ss_pred HHHHHhCcccEEecCCCCcccc-----------------------------ch---------------------------
Q 015762 156 RIYEEFLAVPVIKGKKSELENS-----------------------------KF--------------------------- 179 (401)
Q Consensus 156 ~i~~~l~~ipv~~g~k~~~e~f-----------------------------nF--------------------------- 179 (401)
++|+.++ +|+..+.++++++| +|
T Consensus 180 ~~~~~LG-l~~~~~~~~~~ek~~ga~~~~~ie~~~~dg~~~e~gt~~~lg~~~s~~~~~~Y~~~~G~~~~v~~~~~Gige 258 (459)
T 1nj8_A 180 KFFDTLG-IPYLISKRPEWDKFPGAEYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISD 258 (459)
T ss_dssp HHHHHHT-CCCEEEEECTTSCCTTCSEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTTSSEEECEEEEEEECT
T ss_pred HHHHHCC-CceEEeecCchhhcCCcccceeEEEEcCCCcEEEEEEEeecccccccccCeEEECCCCCEeeeeEeeccHHH
Confidence 9999886 88876665544444 01
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEc-CCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHH
Q 015762 180 VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPV-PYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEM 258 (401)
Q Consensus 180 Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi-~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~ 258 (401)
|+|++|+++|+|++|++||+++||+||+|+|+ +.++ .+++.++|.+|++.|+++ ++|++|+++ .++|+||++|++
T Consensus 259 Rli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~--~~~~~~~a~~l~~~Lr~~-i~v~~D~~~-~~~g~k~~~a~~ 334 (459)
T 1nj8_A 259 RVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGK--EDIVMEKAKEIYEKLKGK-FRVHIDDRD-IRPGRKFNDWEI 334 (459)
T ss_dssp HHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSC--HHHHHHHHHHHHHHHHTT-SCEEECCSC-SCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCc--HHHHHHHHHHHHHHHhhh-cEEEEECCC-CCHHHHHHHHHH
Confidence 99999999999999999999999999999999 5211 036889999999999999 999999987 599999999999
Q ss_pred hCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCH--HHHHHHhc
Q 015762 259 KGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTW--DEFVEALG 336 (401)
Q Consensus 259 ~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~--~e~~~~~~ 336 (401)
+|+|++|+||++|+++|+|+|++|++++|..|+++++++.|.+++++||++||+||++++++||+.++|| |||+++|+
T Consensus 335 ~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v~~~el~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 414 (459)
T 1nj8_A 335 KGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDINPDEIKNILS 414 (459)
T ss_dssp TTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECSSCCHHHHHHHTT
T ss_pred cCCCEEEEECcchhcCCEEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCEEEcccCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred C-CCEEEeecCCChhHHHHHHHhhccCcCCCeeecccCCCCCCCCCCcccccCCCcceEEEEeecC
Q 015762 337 Q-RKMILAPWCDEEEVEKDVKARTKGEMGAAKTLCSPLEQPEVPEGTLCFASGKPAKKWTYWGRSY 401 (401)
Q Consensus 337 ~-~~~~~~pwc~~~~~e~~ik~~~~~~~~~~~~~c~p~~~~~~~~~~~C~~~g~~a~~~~~~~rsY 401 (401)
+ ||||++|| |+.+||++||++| |||+|||| + +||+.|++|||||
T Consensus 415 ~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~-~--------------~~~~~~~~~~~~y 459 (459)
T 1nj8_A 415 EKRGVILVPF-KEEIYNEELEEKV-----EATILGET-E--------------YKGNKYIAIAKTY 459 (459)
T ss_dssp TTCSEEEEEC-CGGGCSHHHHHHH-----SSCEEEEE-E--------------CSSSEEEEEECBC
T ss_pred hCCCEEEEec-CCHHHHHHHHHHh-----CCeeccCc-C--------------CcccEEEEEEeeC
Confidence 7 78999999 9999999999999 99999998 2 8899999999999
No 6
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=2.5e-58 Score=472.29 Aligned_cols=287 Identities=21% Similarity=0.300 Sum_probs=252.6
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHH-HHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEI-KKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~-~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
.++|+++|+|.|+.+|++|++++++.+ +++||++|.||+|++.++|. ++||+++|.+|||+|++++. .++.++|||
T Consensus 52 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sGh~~~~~~emy~~~d~~~--~~~~l~LrP 128 (460)
T 3uh0_A 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWE-KSGHWENYADDMFKVETTDE--EKEEYGLKP 128 (460)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHH-HHTCTTTSGGGSCEECC--------CEEECS
T ss_pred CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHH-hcCCccccccceEEEecCCC--CCceEEEcc
Confidence 489999999999999999999999999 99999999999999999997 68999999999999998631 148999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHHHH---HHHHHHHHH-H
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIY-E 159 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~-~ 159 (401)
|+|++++.+|++++.||++||+|++|||+|||||.++ ++||+|+|||+|+|+|++ ++++++++| +++++.++| +
T Consensus 129 t~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f-~~~e~~~~e~~~~i~~~~~~~~~ 207 (460)
T 3uh0_A 129 MNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIF-CTPSQVKSEIFNSLKLIDIVYNK 207 (460)
T ss_dssp CSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEE-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765 589999999999999995 667888887 889999999 7
Q ss_pred HhCccc-----------EEecCCCC--------cc------------------------cc-------------------
Q 015762 160 EFLAVP-----------VIKGKKSE--------LE------------------------NS------------------- 177 (401)
Q Consensus 160 ~l~~ip-----------v~~g~k~~--------~e------------------------~f------------------- 177 (401)
.|+ +| +..+.+++ |+ .|
T Consensus 208 ~lG-l~~~~~~~~~~~~~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid~~~~d~~gr~~q~ 286 (460)
T 3uh0_A 208 IFP-FVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQV 286 (460)
T ss_dssp TSC-CC-----CCSSCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEEEEEECTTSCEEEE
T ss_pred HcC-CCCcccccccceEEEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEEEEEEccCCCeeee
Confidence 664 77 43222110 00 00
Q ss_pred -------c--------------------------h----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhh
Q 015762 178 -------K--------------------------F----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQG 220 (401)
Q Consensus 178 -------n--------------------------F----Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~ 220 (401)
+ | |+|++|+++|+ +.||+|+||+||+|+|++.++ ++
T Consensus 287 ~Tiqld~~~~~rf~l~y~~~~g~~~~P~~ih~~~~Gg~eRli~~Lie~~~----g~~P~~laP~qv~Vipi~~~~---~~ 359 (460)
T 3uh0_A 287 ATIQLDFQLPERFDLKFKDQDNSYKRPIMIHRATFGSIERFMALLIDSNE----GRWPFWLNPYQAVIIPVNTKN---VQ 359 (460)
T ss_dssp EEEEEESHHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT----TCCCGGGCSCCEEEEESSTTC---HH
T ss_pred cccccccccccccceEEECCCCCccCcEEEecCcchHHHHHHHHHHHHcC----CCCCCCCCCceEEEEEecCCc---HH
Confidence 0 1 99999999884 789999999999999998542 45
Q ss_pred HHHHHHHHHHHHhhC--------------CCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCc
Q 015762 221 IFDACTATVEKLCEA--------------GIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGA 286 (401)
Q Consensus 221 ~~~~a~~l~~~Lr~~--------------Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~ 286 (401)
..++|.+|++.|+++ |++|++|+++ .++|+||++|+++|+||+|+||++|+++|+|+||+|++++
T Consensus 360 ~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~~-~~lg~k~r~Ad~~g~p~~ivvG~~E~~~g~Vtvr~r~~~e 438 (460)
T 3uh0_A 360 QLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIRN-EPVGYRIKSAILKNYSYLIIVGDEEVQLQKYNIRERDNRK 438 (460)
T ss_dssp HHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCCS-SCHHHHHHHHHHHTCSEEEEECHHHHHHTCEEEEEGGGTT
T ss_pred HHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhCCeEEEEECCCCc
Confidence 889999999999998 9999999997 5999999999999999999999999999999999999999
Q ss_pred -eeeechhhHHHHHHHHHHH
Q 015762 287 -KIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 287 -k~~v~~~el~~~i~~~l~~ 305 (401)
|..++++++++.+.++++.
T Consensus 439 ~q~~v~~~el~~~l~~~~~~ 458 (460)
T 3uh0_A 439 SFEKLTMSQIWEKFIELEKN 458 (460)
T ss_dssp SCEEECHHHHHHHHHHHHHT
T ss_pred eeEEeeHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 7
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=1.6e-54 Score=444.98 Aligned_cols=285 Identities=22% Similarity=0.393 Sum_probs=255.2
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..++|+++|+|.|+++|++|++++++.+.++||++|.||+|++.++|. .+|||+.|.+|||+++|+++ +.++|||
T Consensus 54 ~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~-~sg~~d~~~~em~~~~d~~~----~~~~LrP 128 (458)
T 2i4l_A 54 QEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWR-ESGRYDAYGPEMLRIADRHK----RELLYGP 128 (458)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHH-HHTHHHHSCTTSEEEECTTC----CEEEECS
T ss_pred ccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHH-hcCCccccccceEEEEeCCC----CeEEECC
Confidence 347999999999999999999999999999999999999999999995 67999999999999999875 8999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHh
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEF 161 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l 161 (401)
|+|..++.+++.++.||++||+|+||+|+|||+|.+|+.||+|+|||+|.|+|+++.+.+++++| ++++|.++|+.+
T Consensus 129 t~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~l 208 (458)
T 2i4l_A 129 TNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARM 208 (458)
T ss_dssp CCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998898899999999999999999999999998 457799999988
Q ss_pred CcccEEe----------------------cCC-----------------CC--------------c--------------
Q 015762 162 LAVPVIK----------------------GKK-----------------SE--------------L-------------- 174 (401)
Q Consensus 162 ~~ipv~~----------------------g~k-----------------~~--------------~-------------- 174 (401)
| +++.. |.. .. .
T Consensus 209 G-l~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~ 287 (458)
T 2i4l_A 209 G-LKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYE 287 (458)
T ss_dssp T-CCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHH
T ss_pred C-CceEEEEccccccCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhccccccc
Confidence 6 65310 100 00 0
Q ss_pred -cc----------------c---------------------------ch-----HHHHHHHHHcCCCCCCCCCCCCCCce
Q 015762 175 -EN----------------S---------------------------KF-----VQIGVMVMVHGDDKGLMLPPKVASVQ 205 (401)
Q Consensus 175 -e~----------------f---------------------------nF-----Rli~~li~~~~dd~Gl~lP~~iap~q 205 (401)
.. | -| |++++|++++.|++|+.||+++||+|
T Consensus 288 ~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~~G~~~p~~~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~ 367 (458)
T 2i4l_A 288 SEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPIHGGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFR 367 (458)
T ss_dssp HHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCEEECEEEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCS
T ss_pred CCCCCcCceeeeeeccCcEEEecccccccCCcEEECCCCCEeceEEeeecccHHHHHHHHHHhhccccCCcCCcccCCce
Confidence 00 1 01 99999999999999999999999999
Q ss_pred EEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCC
Q 015762 206 VIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNG 285 (401)
Q Consensus 206 V~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg 285 (401)
|+|+|++.++ ++..++|.+|++.|+++|++|.+|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|+++
T Consensus 368 v~vi~~~~~~---~~~~~~a~~l~~~Lr~~Gi~v~~D~~~-~~~g~k~~~ad~~g~p~~iivG~~e~~~g~v~vr~r~~~ 443 (458)
T 2i4l_A 368 VTILNLKQGD---AATDAACDQLYRELSAKGVDVLYDDTD-QRAGAKFATADLIGIPWQIHVGPRGLAEGKVELKRRSDG 443 (458)
T ss_dssp EEEEESSTTC---HHHHHHHHHHHHHHHHTTCCEEEECSS-CCHHHHHHHHHHHTCSEEEEECHHHHTTTEEEEEETTTC
T ss_pred EEEEecCCCC---HHHHHHHHHHHHHHhhCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECCchhhCCEEEEEECCCC
Confidence 9999996433 678899999999999999999999997 499999999999999999999999999999999999999
Q ss_pred ceeeechhhHHHHH
Q 015762 286 AKIDLPRGSLVERV 299 (401)
Q Consensus 286 ~k~~v~~~el~~~i 299 (401)
++..|+++++++.|
T Consensus 444 ~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 444 ARENLALADVVARL 457 (458)
T ss_dssp CEEEEETTTTTCC-
T ss_pred cEEEEeHHHHHHhh
Confidence 99999999987654
No 8
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=3.1e-54 Score=458.58 Aligned_cols=281 Identities=20% Similarity=0.359 Sum_probs=252.4
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
.++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ ||||+.|.++||. ++.++ ++++||||
T Consensus 259 ~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~----~~~~LrP~ 332 (642)
T 1qf6_A 259 EAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSEN----REYCIKPM 332 (642)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETT----EEEEECSS
T ss_pred CCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCC----ceEEecCC
Confidence 489999999999999999999999999999999999999999999975 8999999999999 88764 89999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC-CCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHh
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEF 161 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l 161 (401)
+|++++.+|+++++||++||+|+||+|+|||||.+ |++||+|+|||+|.|+|+++ +++++++| +++++.++|+.+
T Consensus 333 ~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~-~~~~~~~e~~~~i~~~~~i~~~l 411 (642)
T 1qf6_A 333 NCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYSTF 411 (642)
T ss_dssp SHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEc-CHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999976 57899999999999999965 67888888 799999999998
Q ss_pred Ccc-cEEe--cCCCC--------cc--------------------------------------------------ccc--
Q 015762 162 LAV-PVIK--GKKSE--------LE--------------------------------------------------NSK-- 178 (401)
Q Consensus 162 ~~i-pv~~--g~k~~--------~e--------------------------------------------------~fn-- 178 (401)
| + ++.. +..++ |+ .|+
T Consensus 412 G-l~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~df~l~ 490 (642)
T 1qf6_A 412 G-FEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLP 490 (642)
T ss_dssp T-CCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHH
T ss_pred C-CCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCceEEeeeEEEeccCC
Confidence 6 6 4421 11000 00 110
Q ss_pred ------------------------h----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHH
Q 015762 179 ------------------------F----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVE 230 (401)
Q Consensus 179 ------------------------F----Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~ 230 (401)
| |+|++|+++|++ .||+|+||+||+|+|++ ++..++|.+|++
T Consensus 491 ~r~~~~y~~~~g~~~~P~~~hrai~G~ieR~i~~liE~~~~----~~P~~laP~qv~vipi~------~~~~~~a~~v~~ 560 (642)
T 1qf6_A 491 SRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG----FFPTWLAPVQVVIMNIT------DSQSEYVNELTQ 560 (642)
T ss_dssp HHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSCEEEEESS------HHHHHHHHHHHH
T ss_pred ccCCCEEEecCCCCcCcEEEEeccCCCHHHHHHHHHHHhcC----CCCcccCCceEEEEEeC------HHHHHHHHHHHH
Confidence 0 999999999873 89999999999999998 678999999999
Q ss_pred HHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 231 KLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 231 ~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
.|+++|++|++|+++. ++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.|.++++.
T Consensus 561 ~L~~~Gi~v~~D~~~~-~~g~kir~a~~~g~p~~ivvG~~E~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~ 634 (642)
T 1qf6_A 561 KLSNAGIRVKADLRNE-KIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRS 634 (642)
T ss_dssp HHHTTTCCEEEECCSS-CHHHHHHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHT
T ss_pred HHHhCCCEEEEECCCC-CHHHHHHHHHHcCCCEEEEECchhhhcCeEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 9999999999999974 9999999999999999999999999999999999999999999999999988776653
No 9
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=1.1e-53 Score=440.08 Aligned_cols=297 Identities=18% Similarity=0.201 Sum_probs=261.7
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
.++|+++|+|.|+.+|++|++++++.++++||++|.||+|++.++|. .+||++.|.++||+| |+++ +.++||||
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~-~sg~~~~~~~emy~~-d~~~----~~l~LRP~ 110 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFK-VSGHIEFYRNNMYLF-DIEG----HEFAVKPM 110 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHH-HTCCCTTGGGGSEEE-EETT----EEEEECSC
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhh-hccCccccccceEEE-ecCC----cEEEEccc
Confidence 58999999999999999999999999999999999999999999996 578999999999999 6654 89999999
Q ss_pred CChhHHHHHHHhHhcCC---CCCeEEEeeecceecCCCCC--CCcccchhheeccceeecCChhhHH--HHHHHHHHHHH
Q 015762 86 SETVMYPYFSKWIRGHR---DLPLKLNQWCNVVRWEFSNP--TPFIRSREFLWQEGHTAFATKSEAD--DEILELYRRIY 158 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~---~LPlk~~q~~~vfR~E~~~~--~gllR~REF~q~e~~~~~~~~~~a~--~eil~~~~~i~ 158 (401)
+|++++++|++++.||+ +||+|+||||+|||||.+ + +||+|+|||+|.|+|+++...+.++ +|++.+|.++|
T Consensus 111 ~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~-~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l 189 (471)
T 3a32_A 111 NCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPS-GSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVL 189 (471)
T ss_dssp SHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCC-cccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 999999999999999954 6 8999999999999999876666666 66999999999
Q ss_pred HH-hCcc----c-E--EecCCC-----C-------------------------------------------------cc-
Q 015762 159 EE-FLAV----P-V--IKGKKS-----E-------------------------------------------------LE- 175 (401)
Q Consensus 159 ~~-l~~i----p-v--~~g~k~-----~-------------------------------------------------~e- 175 (401)
+. +| + + + ..+..+ + .+
T Consensus 190 ~~~lG-l~~~~~~~~l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~ 268 (471)
T 3a32_A 190 ERLFK-LGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVE 268 (471)
T ss_dssp HHTSC-CCCSTTTEEEEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEE
T ss_pred HHhhC-CCcCCCCeEEEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEEecc
Confidence 99 65 7 3 4 212111 0 01
Q ss_pred -----cc---------------------c----------h----------HHHHHHHHHcCCCCCCCCCCCCCCceEEEE
Q 015762 176 -----NS---------------------K----------F----------VQIGVMVMVHGDDKGLMLPPKVASVQVIVI 209 (401)
Q Consensus 176 -----~f---------------------n----------F----------Rli~~li~~~~dd~Gl~lP~~iap~qV~Ii 209 (401)
++ + . |++++|+++|+ | .||+++||+||+|+
T Consensus 269 ~~~l~~~~~~g~~~lD~~l~r~~d~~Yyt~~~~G~~e~~~i~~~i~GgieRli~~lie~~~---g-~~p~~~ap~qv~Ii 344 (471)
T 3a32_A 269 ESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHRALLGSIERFLGVYLEHRR---G-RMPFTLAPIQFAVI 344 (471)
T ss_dssp SSSCEEEEEEEEEEEESSHHHHTTHHHHHHHHHCCSCEEEEEEEEEEEHHHHHHHHHHHTT---T-CCCGGGCSCSEEEE
T ss_pred HHhhhhhheeeeEEecccccccCCceEeccccCCceeeEEEeccccCcHHHHHHHHHHHhC---C-CCCCCcCCceEEEE
Confidence 11 2 0 99999999875 3 89999999999999
Q ss_pred EcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcC-CCCCCHHHHHHHHH-HhCCCEEEEeCccccCCCeEEEEECCCCc-
Q 015762 210 PVPYKDADTQGIFDACTATVEKLCEAGIRANSDF-RDNYSPGWKYSHWE-MKGVPLRIEIGPKDLANDQVRAVRRDNGA- 286 (401)
Q Consensus 210 pi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~-~~~~s~g~k~~~ae-~~GvP~~iiiG~kE~~~~~V~v~~r~tg~- 286 (401)
|++.+++.+++..++|.+|++.|+++|++|.+|+ ++ .++|+||++|+ ++|+|++|+||++|+++|+|+||+|++++
T Consensus 345 p~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~~-~~~g~k~~~a~~~~gip~~iiiG~~e~~~~~V~vr~r~~~~q 423 (471)
T 3a32_A 345 AVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSSK-TGLSSDVRHIESTAKPAVNVFIGAKEVREKVLDVRVFDLESM 423 (471)
T ss_dssp EEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEET-TTHHHHHHHHHHTTCCSEEEEECHHHHHHTEEEEEEEETTTT
T ss_pred EccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCCC-CCHHHHHHHHHHhcCCCEEEEECchhhhCCEEEEEECCCCcc
Confidence 9974322235688999999999999999999999 77 49999999999 99999999999999999999999999998
Q ss_pred -eeeechh-----hHHHHHHHHHHHHHHHHHHHHH
Q 015762 287 -KIDLPRG-----SLVERVKELLEEVQESLFVAAK 315 (401)
Q Consensus 287 -k~~v~~~-----el~~~i~~~l~~~~~~l~~~a~ 315 (401)
+..|+++ ++++.|.++|+++|++|++.|-
T Consensus 424 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3a32_A 424 KRRRLAIAYGDAADAVENLAAVAEELESPVRSLSG 458 (471)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ceEEEeecccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999 9999999999999999999874
No 10
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=1.8e-53 Score=430.35 Aligned_cols=281 Identities=20% Similarity=0.344 Sum_probs=251.0
Q ss_pred cCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcC
Q 015762 5 YDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRP 84 (401)
Q Consensus 5 ~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRP 84 (401)
..++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.+ +||++.|.++||+ .|+++ +.++|||
T Consensus 17 ~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~----~~~~LrP 90 (401)
T 1evl_A 17 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSEN----REYCIKP 90 (401)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETT----EEEEECS
T ss_pred CCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCC----ceEEEcC
Confidence 4589999999999999999999999999999999999999999999975 8999999999999 77764 8999999
Q ss_pred CCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC-CCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHH
Q 015762 85 TSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEE 160 (401)
Q Consensus 85 t~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~ 160 (401)
|+|++++++|++++.||++||+|+||+|+|||||.+ |++||+|+|||+|.|+|+++ +++++++| ++++|.++|+.
T Consensus 91 ~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~-~~~~~~~e~~e~i~~~~~~~~~ 169 (401)
T 1evl_A 91 MNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC-TEEQIRDEVNGCIRLVYDMYST 169 (401)
T ss_dssp CSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 68899999999999999965 68888885 89999999998
Q ss_pred hCcc-cEE--ecCCC--------------------------------------------------Cc----c----ccc-
Q 015762 161 FLAV-PVI--KGKKS--------------------------------------------------EL----E----NSK- 178 (401)
Q Consensus 161 l~~i-pv~--~g~k~--------------------------------------------------~~----e----~fn- 178 (401)
++ + ++. .+..+ -+ . .|+
T Consensus 170 lg-l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l 248 (401)
T 1evl_A 170 FG-FEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSL 248 (401)
T ss_dssp TT-CSCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESSH
T ss_pred cC-CCceEEEEecCCcccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeeecccc
Confidence 86 6 431 11110 00 0 110
Q ss_pred -------------------------h----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHH
Q 015762 179 -------------------------F----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATV 229 (401)
Q Consensus 179 -------------------------F----Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~ 229 (401)
| |++++|+++|++ .||++++|+||+|+|++ ++..++|.+|+
T Consensus 249 ~~~~~~~y~~~~g~~~~p~~~~~~~~GgieRli~~l~e~~~~----~~p~~~ap~~v~vi~~~------~~~~~~a~~l~ 318 (401)
T 1evl_A 249 PSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAG----FFPTWLAPVQVVIMNIT------DSQSEYVNELT 318 (401)
T ss_dssp HHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHTT----CCCTTTCSSCEEEEESS------GGGHHHHHHHH
T ss_pred ccccCCEEECCCCCCcCcEEEEecCCCcHHHHHHHHHHHhCC----cCCCCCCCeEEEEEecC------HHHHHHHHHHH
Confidence 0 999999999873 79999999999999997 56789999999
Q ss_pred HHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 230 EKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 230 ~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
+.||++|++|++|+++ .++|+||++|++.|+|++|+||++|+++|+|+||+|++++|..++++++++.+.++++
T Consensus 319 ~~Lr~~Gi~v~~d~~~-~~~~~k~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~~~~ 392 (401)
T 1evl_A 319 QKLSNAGIRVKADLRN-EKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIR 392 (401)
T ss_dssp HHHHHTTCCEEEECCS-SCHHHHHHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCC-CCHHHHHHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHHHHh
Confidence 9999999999999987 5999999999999999999999999999999999999999999999999998876654
No 11
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=3.5e-53 Score=446.33 Aligned_cols=287 Identities=21% Similarity=0.352 Sum_probs=257.0
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
.++|+++|+|.|+++|++|++++++.++++||++|.||+|++.++|. ++||++.|.++||+|+|+++ +.++||||
T Consensus 35 ~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~-~sG~~~~~~~~m~~~~d~~~----~~~~LrP~ 109 (572)
T 2j3l_A 35 VAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWK-ESGRYETYGPNLYRLKDRND----RDYILGPT 109 (572)
T ss_dssp EETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHH-HHSHHHHSCTTSCEEECTTC----CEEEECSC
T ss_pred cCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHH-hcCCccccchheEEEecCCC----CeEEEccc
Confidence 46999999999999999999999999999999999999999999995 67999999999999999875 89999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHHHHhC
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIYEEFL 162 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~~~l~ 162 (401)
+|++++++|++++.||++||+|+||+|+|||||.+|+.||+|+|||+|.|+|+++.+.+++++| ++++|.++|+.++
T Consensus 110 ~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lg 189 (572)
T 2j3l_A 110 HEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCG 189 (572)
T ss_dssp CHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999997667799999999999999999999999998 5778999999875
Q ss_pred cccEEe---------c----------------------------------------------------------------
Q 015762 163 AVPVIK---------G---------------------------------------------------------------- 169 (401)
Q Consensus 163 ~ipv~~---------g---------------------------------------------------------------- 169 (401)
+|+.. |
T Consensus 190 -l~~~~~~~~~g~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~~ 268 (572)
T 2j3l_A 190 -LEFRAIIGDGGAMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVAN 268 (572)
T ss_dssp -CCEEEEECCGGGGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHHH
T ss_pred -CcEEEEecccccCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHHHHHH
Confidence 44210 0
Q ss_pred ------------------------------------------C---------------------------C-C-------
Q 015762 170 ------------------------------------------K---------------------------K-S------- 172 (401)
Q Consensus 170 ------------------------------------------~---------------------------k-~------- 172 (401)
. + .
T Consensus 269 ~lg~~~~~i~K~l~~~~~~~~~~vli~gd~el~~~kl~~~l~~~~l~~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~ 348 (572)
T 2j3l_A 269 FFEVEPQRIIKSVLFIADEEPVMVLVRGDHDVNDVKLKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADL 348 (572)
T ss_dssp HHTCCGGGBEEEEEEEETTEEEEEEEETTCCBCHHHHHHHHTCSCEEECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEET
T ss_pred HhCcCHHHeEEEEEEEeCCcEEEEEeeCccccCHHHHHHhhCCCccccCCHHHHHHhhCCCccccCCccCCCCCcEEEeh
Confidence 0 0 0
Q ss_pred ---C-------------------c-----------------------------------------------cccc-----
Q 015762 173 ---E-------------------L-----------------------------------------------ENSK----- 178 (401)
Q Consensus 173 ---~-------------------~-----------------------------------------------e~fn----- 178 (401)
. + +.|+
T Consensus 349 sl~r~~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~ 428 (572)
T 2j3l_A 349 AVQDLANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLD 428 (572)
T ss_dssp TTTTCCSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEEEEEETHHHHHHTCEEEC
T ss_pred hhhcCCceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEEeccCcccccccCCEEEC
Confidence 0 0 0110
Q ss_pred ------------h-----HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEE
Q 015762 179 ------------F-----VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANS 241 (401)
Q Consensus 179 ------------F-----Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~i 241 (401)
| |++++|+++|+|++|+.||+++||+||+|+|++.++ ++..++|.+|++.||++|++|.+
T Consensus 429 ~~g~~~~p~~g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~---~~~~~~a~~l~~~Lr~~gi~v~~ 505 (572)
T 2j3l_A 429 ENGREKSVIMGCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKD---EYQTKLSQEVEAMMTEAGYEVLV 505 (572)
T ss_dssp TTSCEEECEEEEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTC---HHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEeeeeeccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCC---HHHHHHHHHHHHHHHhCCCeEEE
Confidence 1 999999999999999999999999999999997432 56889999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 242 DFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 242 D~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
|+++ .++|+||++|++.|+|++|+||++| ++|+|+||+|++++|..++++++++.+. +++
T Consensus 506 d~~~-~~~g~k~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~~~l~~~l~-~~~ 565 (572)
T 2j3l_A 506 DDRN-ERAGVKFADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRKEELESTLS-ILM 565 (572)
T ss_dssp ECSS-CCHHHHHHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEHHHHHHHHH-HHC
T ss_pred eCCC-CCHhHHHHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeHHHHHHHHH-HHh
Confidence 9987 4999999999999999999999999 9999999999999999999999999887 654
No 12
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=8.5e-52 Score=441.02 Aligned_cols=282 Identities=16% Similarity=0.281 Sum_probs=249.0
Q ss_pred CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCC-CcEEEcCC
Q 015762 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLE-VPIAIRPT 85 (401)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~-~~l~LRPt 85 (401)
++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|. .+|||+.|.++||+++|.+ + +.++||||
T Consensus 260 ~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~-~sG~~d~~~~~mf~~~d~~----~~~~~~LrP~ 334 (645)
T 1nyr_A 260 GAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYK-TSGHWDHYQEDMFPPMQLD----ETESMVLRPM 334 (645)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHH-HHTHHHHCTTSSCCCEEET----TTEEEEECSS
T ss_pred CCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHh-hCCCccccccCcceeEecC----CCeEEEeCCC
Confidence 7999999999999999999999999999999999999999999996 5799999999999998876 4 78999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC-CCCCcccchhheeccceeecCChhhHH--HHHHHHHHHHHHHhC
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEAD--DEILELYRRIYEEFL 162 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~--~eil~~~~~i~~~l~ 162 (401)
+|++++++|+++++||++||+|+||+|+|||||.+ +..||+|+|||+|.|+|+++...+.++ +++++++.++|+.+|
T Consensus 335 ~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lG 414 (645)
T 1nyr_A 335 NCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFG 414 (645)
T ss_dssp SHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999965 237999999999999999775555555 559999999999986
Q ss_pred cc-cE--EecCCC----C--------cc----------------------------------------------------
Q 015762 163 AV-PV--IKGKKS----E--------LE---------------------------------------------------- 175 (401)
Q Consensus 163 ~i-pv--~~g~k~----~--------~e---------------------------------------------------- 175 (401)
+ ++ ..+..+ + |+
T Consensus 415 -l~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gtiq~D~ 493 (645)
T 1nyr_A 415 -FEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDF 493 (645)
T ss_dssp -CCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEEEES
T ss_pred -CCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehhhhhCchhhcceEEeec
Confidence 6 43 111111 0 00
Q ss_pred ----ccc--h----------------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHH
Q 015762 176 ----NSK--F----------------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTA 227 (401)
Q Consensus 176 ----~fn--F----------------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~ 227 (401)
+|+ | |++++|+++|+ ..||+|+||+||+|+|++. ++..++|.+
T Consensus 494 ~l~~~~d~~Y~~~~g~~~~P~~ih~~~~GgieR~i~~liE~~~----~~~P~~lap~qv~vip~~~-----~~~~~~a~~ 564 (645)
T 1nyr_A 494 LLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLTEETK----GAFPTWLAPKQVQIIPVNV-----DLHYDYARQ 564 (645)
T ss_dssp SHHHHTTCCEECTTSCEECCEEEEEEEEEEHHHHHHHHHHHHT----TCCCTTTCSSCEEEEESSH-----HHHHHHHHH
T ss_pred ccccccceEEECCCCCccCcEEEEeccCCcHHHHHHHHHHHhc----CCCCCCCCCceEEEEEccc-----HHHHHHHHH
Confidence 000 0 99999999976 3899999999999999971 568899999
Q ss_pred HHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 228 TVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 228 l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
|++.|+++|++|++|+++. ++|+||++|++.|+|++|+||++|+++|+|+||+|+++++..++++++++.+.+.++
T Consensus 565 i~~~Lr~~Gi~v~~D~~~~-~~g~k~~~a~~~g~p~~iivG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~ 640 (645)
T 1nyr_A 565 LQDELKSQGVRVSIDDRNE-KMGYKIREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIR 640 (645)
T ss_dssp HHHHHHTTTCCEEECCSSC-CHHHHHHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEECCCC-CHHHHHHHHHhcCCCEEEEEccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHh
Confidence 9999999999999999974 999999999999999999999999999999999999999999999999998877654
No 13
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=5.8e-51 Score=422.29 Aligned_cols=292 Identities=20% Similarity=0.235 Sum_probs=249.6
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHH--HcCCeEeccCCccChhhhhhhccCcccccccceEEEe-----------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK--KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK----------- 70 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~--~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~----------- 70 (401)
|..++|+++|+|.|+.++++|++++++.+. ++||++|.||+|.+.++| +.||||+.|.++||.+.+
T Consensus 25 ~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~-~~SGh~~~f~d~m~~~~~~~~~~r~d~l~ 103 (505)
T 1ati_A 25 YGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL-HYSGHEATFADPMVDNRITKKRYRLDHLL 103 (505)
T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHH-HHTSHHHHCEEEEEEC-------------
T ss_pred cCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHH-HhcCChhhcCccceeccccccccchhhhh
Confidence 346799999999999999999999999998 999999999999999999 589999999999987421
Q ss_pred -------------------------------------------------cCC-CC--------------------CCCcE
Q 015762 71 -------------------------------------------------SGE-SD--------------------LEVPI 80 (401)
Q Consensus 71 -------------------------------------------------~g~-~~--------------------l~~~l 80 (401)
.|. .+ -++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~ 183 (505)
T 1ati_A 104 KEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLA 183 (505)
T ss_dssp -------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEE
T ss_pred hhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCccccccce
Confidence 000 00 03578
Q ss_pred EEcCCCChhHHHHHHHhHhcC-CCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHH---HHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRR 156 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~-~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~ 156 (401)
+|||++|++++..|++++.|| ++||+++||+|+|||||.+|+.||+|+|||+|.|+|+ |++++++.++ ++++|.+
T Consensus 184 ~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~-f~~~e~~~~~~~~~i~~~~~ 262 (505)
T 1ati_A 184 YLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEY-FVRPGEDEYWHRYWVEERLK 262 (505)
T ss_dssp EECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHH
T ss_pred eecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEE-EECHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999888999999999999995 7788877654 9999999
Q ss_pred HHHHhCcccE----Eec----C-----CC----------------------C-------c----------------cccc
Q 015762 157 IYEEFLAVPV----IKG----K-----KS----------------------E-------L----------------ENSK 178 (401)
Q Consensus 157 i~~~l~~ipv----~~g----~-----k~----------------------~-------~----------------e~fn 178 (401)
+|+.+| +|. ..+ . .. + . .+|+
T Consensus 263 i~~~LG-l~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~~~~d~~L~~~~~~~~~~~~~~~~~~n~~~~~~ 341 (505)
T 1ati_A 263 WWQEMG-LSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQR 341 (505)
T ss_dssp HHHHTT-CCGGGEEEEECCTTTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCSSTTTTTCCSCCCCCSCCCSC
T ss_pred HHHHcC-CCeEEEEECCCChHhhhcccHHHHhHHhhcCCCCccchhhhcccceecchhhccccccceeeeecccccceeE
Confidence 999986 552 000 0 00 0 0 1121
Q ss_pred ------------------h-----HHHHHHHHHc--------CC-CCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHH
Q 015762 179 ------------------F-----VQIGVMVMVH--------GD-DKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACT 226 (401)
Q Consensus 179 ------------------F-----Rli~~li~~~--------~d-d~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~ 226 (401)
| |++++|+++| +| +.|+.||+++||+||+|+|++.++ ++..++|.
T Consensus 342 ~~y~d~~g~~~y~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~---~~~~~~a~ 418 (505)
T 1ati_A 342 LAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNR---PEITEYAK 418 (505)
T ss_dssp CCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSC---HHHHHHHH
T ss_pred EEEEcCCCCeeecceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCcc---HHHHHHHH
Confidence 1 9999999887 55 678899999999999999998422 57899999
Q ss_pred HHHHHHhhCC-CEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccC---------CCeEEEEECCCCceeeechhhHH
Q 015762 227 ATVEKLCEAG-IRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLA---------NDQVRAVRRDNGAKIDLPRGSLV 296 (401)
Q Consensus 227 ~l~~~Lr~~G-irv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~---------~~~V~v~~r~tg~k~~v~~~el~ 296 (401)
+|++.|+++| ++|.+|++ . ++|+||++|++.|+|++|+||++|++ +|+|+||+|++++|..|++++++
T Consensus 419 ~l~~~Lr~~G~i~v~~D~~-~-sig~k~~~ad~~g~p~~iivG~~el~~~~~~~~~~~g~V~vr~r~t~~q~~v~~~el~ 496 (505)
T 1ati_A 419 RLKARLLALGLGRVLYEDT-G-NIGKAYRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELE 496 (505)
T ss_dssp HHHHHHHTTCSSCEEECCC-S-CHHHHHHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHH
T ss_pred HHHHHHhccCCEEEEECCC-C-CHHHHHHHHHHCCCCEEEEEChHHhhhccccccccCCEEEEEECCCCceEEEEHHHHH
Confidence 9999999999 99999998 4 99999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHH
Q 015762 297 ERVKELL 303 (401)
Q Consensus 297 ~~i~~~l 303 (401)
+.|.+++
T Consensus 497 ~~l~~~l 503 (505)
T 1ati_A 497 GFLRERL 503 (505)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887654
No 14
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=4.2e-50 Score=428.11 Aligned_cols=307 Identities=20% Similarity=0.236 Sum_probs=254.3
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHH-HcCCeEeccCCccChhhhhhhccCcccccccceEEEecCC---------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE--------- 73 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~-~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~--------- 73 (401)
|++++|++||+|.|+++|++|+++|++.+. ..||++|+||+|.|.++| +.||||++|.++|+.+++.+.
T Consensus 87 y~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lw-k~SGH~~~f~d~m~~~~~~~e~yr~D~l~e 165 (693)
T 2zt5_A 87 YGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVL-KTSGHVDKFADFMVKDVKNGECFRADHLLK 165 (693)
T ss_dssp GTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHH-HHHTHHHHCEEEEEEBSSSCCEEEHHHHHH
T ss_pred cCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHH-hhcCCcccccccceeeccCCceeeccHhHH
Confidence 466899999999999999999999999998 569999999999999999 589999999986664433220
Q ss_pred ---------------------------C-----------------------------------------CCCCcEEEcCC
Q 015762 74 ---------------------------S-----------------------------------------DLEVPIAIRPT 85 (401)
Q Consensus 74 ---------------------------~-----------------------------------------~l~~~l~LRPt 85 (401)
. .-++.++|||+
T Consensus 166 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPE 245 (693)
T 2zt5_A 166 AHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPE 245 (693)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSC
T ss_pred HHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccc
Confidence 0 01378999999
Q ss_pred CChhHHHHHHHhHhc-CCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhH--------H---------
Q 015762 86 SETVMYPYFSKWIRG-HRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA--------D--------- 147 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s-~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a--------~--------- 147 (401)
.+++++..|++++.+ |++||+++||||++||||.+|+.||+|+|||+|.|+|+|+...+.. +
T Consensus 246 taqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~ 325 (693)
T 2zt5_A 246 TAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAK 325 (693)
T ss_dssp SHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHH
T ss_pred cchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhh
Confidence 999999999999987 6899999999999999999998899999999999999976443321 0
Q ss_pred ------------------------H---HHHHHHHHHHHHhCccc---EE------------------------------
Q 015762 148 ------------------------D---EILELYRRIYEEFLAVP---VI------------------------------ 167 (401)
Q Consensus 148 ------------------------~---eil~~~~~i~~~l~~ip---v~------------------------------ 167 (401)
+ .++..+.++|..+| ++ +.
T Consensus 326 ~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lG-i~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~ 404 (693)
T 2zt5_A 326 AQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVG-ISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEI 404 (693)
T ss_dssp HHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHT-CCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEE
T ss_pred hhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcC-cCccEEEEeccCchhhccchhhhhhehhhccCChHHH
Confidence 1 16778888888875 32 10
Q ss_pred ec--CCCC--------------------------------------------------------c-c-------------
Q 015762 168 KG--KKSE--------------------------------------------------------L-E------------- 175 (401)
Q Consensus 168 ~g--~k~~--------------------------------------------------------~-e------------- 175 (401)
.| .+++ + +
T Consensus 405 ~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g 484 (693)
T 2zt5_A 405 VGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEMLLNEKG 484 (693)
T ss_dssp EEEECCCSHHHHHHHHHHTCCCCEEEC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 00 0000 0 0
Q ss_pred ---------cc----------------------------ch---HHHHHHHHHcCC-----CC--CCCCCCCCCCceEEE
Q 015762 176 ---------NS----------------------------KF---VQIGVMVMVHGD-----DK--GLMLPPKVASVQVIV 208 (401)
Q Consensus 176 ---------~f----------------------------nF---Rli~~li~~~~d-----d~--Gl~lP~~iap~qV~I 208 (401)
.| -| |+|++|+++|.| +. |+.||+++||+||+|
T Consensus 485 ~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~V 564 (693)
T 2zt5_A 485 EFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSV 564 (693)
T ss_dssp ---------------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEE
T ss_pred CEEEEECCEEEEecccccceeeEEeccCCcEecCcceeCeehHHHHHHHHHHHhccccccccccccccCCCCCCCCeEEE
Confidence 01 01 999999998665 45 789999999999999
Q ss_pred EEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCcccc--CCCeEEEEECCCCc
Q 015762 209 IPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDL--ANDQVRAVRRDNGA 286 (401)
Q Consensus 209 ipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~--~~~~V~v~~r~tg~ 286 (401)
+|++.+ ++..++|.+|++.||++|++|.+|+++ .++|+||++|++.|+|++|+||++|+ ++|+|+||+|++++
T Consensus 565 ipl~~~----~~~~~~A~~l~~~Lr~~Gi~v~~D~~~-~sigkk~k~Ad~~G~p~~IiIG~~El~~~~g~Vtvr~r~t~e 639 (693)
T 2zt5_A 565 LPLSQN----QEFMPFVKELSEALTRHGVSHKVDDSS-GSIGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMR 639 (693)
T ss_dssp EESCCS----TTTHHHHHHHHHHHHHTTCCEEECCCC-SCHHHHHHHHHHTTCCEEEEECHHHHTSSSCEEEEEETTTCC
T ss_pred EEecCc----HHHHHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHcCCCEEEEEcchhhhccCCEEEEEECCCCc
Confidence 999832 357899999999999999999999987 49999999999999999999999999 99999999999999
Q ss_pred eeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhc
Q 015762 287 KIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALG 336 (401)
Q Consensus 287 k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~ 336 (401)
|..|+++++++.|.++++. ..||+|+.+.+-
T Consensus 640 q~~v~l~el~~~l~~~l~~-------------------~~~w~~~~~~~~ 670 (693)
T 2zt5_A 640 QIRAEISELPSIVQDLANG-------------------NITWADVEARYP 670 (693)
T ss_dssp EEEEETTTHHHHHHHHHTT-------------------SSCHHHHHHHSC
T ss_pred eEEEeHHHHHHHHHHHHhC-------------------cccHHHHHHhcc
Confidence 9999999999888765542 588999999884
No 15
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=4.9e-48 Score=392.87 Aligned_cols=281 Identities=12% Similarity=0.136 Sum_probs=244.7
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccC-cccccccceEEEecCCCCCCCc
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVP 79 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh-~~~f~~e~y~~~~~g~~~l~~~ 79 (401)
|+++..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| ++.+.+|||+|+|+++ +.
T Consensus 1 ~m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g----~~ 76 (423)
T 1htt_A 1 AKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNG----DS 76 (423)
T ss_dssp --CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTS----CE
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCC----CE
Confidence 346889999999999999999999999999999999999999999999999876687 8889999999999875 99
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
++|||+.|++++++++.+ .+++++|+|+||+|+|||+| +|+.| |+|||+|.|+|++|.+.+.||+|++.++.++|+
T Consensus 77 l~Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e-~p~~g--R~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~ 152 (423)
T 1htt_A 77 LTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHE-RPQKG--RYRQFHQLGCEVFGLQGPDIDAELIMLTARWWR 152 (423)
T ss_dssp EEECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCC-CCCSS--CCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred EEeCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCC-CCCCC--ccceeEEeeEEEECCCCchhhHHHHHHHHHHHH
Confidence 999999999999999876 45789999999999999999 88888 999999999999999999999999999999999
Q ss_pred HhCcc-c-E--EecC----------------------C---C--------------Cc--c---cc--------------
Q 015762 160 EFLAV-P-V--IKGK----------------------K---S--------------EL--E---NS-------------- 177 (401)
Q Consensus 160 ~l~~i-p-v--~~g~----------------------k---~--------------~~--e---~f-------------- 177 (401)
.++ + + + ..|. . + +. + .+
T Consensus 153 ~lg-l~~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~ 231 (423)
T 1htt_A 153 ALG-ISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEE 231 (423)
T ss_dssp HHT-CGGGCEEEEEECCCHHHHHHC---------------------------------------------------CCHH
T ss_pred HCC-CCCCcEEEEcCCCChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHH
Confidence 886 5 2 2 1000 0 0 00 0 00
Q ss_pred -------------------------------------------------------------ch---------------HH
Q 015762 178 -------------------------------------------------------------KF---------------VQ 181 (401)
Q Consensus 178 -------------------------------------------------------------nF---------------Rl 181 (401)
.| |+
T Consensus 232 ~~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pavGf~igveRl 311 (423)
T 1htt_A 232 SREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERL 311 (423)
T ss_dssp HHHHHHHHHHHHHTTTCCCEECTTCCCSSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEccccccchHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeEEEEecHHHH
Confidence 01 89
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhC--CCEEEEcCCCCCCHHHHHHHHHHh
Q 015762 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEA--GIRANSDFRDNYSPGWKYSHWEMK 259 (401)
Q Consensus 182 i~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~--Girv~iD~~~~~s~g~k~~~ae~~ 259 (401)
+++|.++ |. +||+.+|+||+|+|++ ++..++|.++++.||++ |++|++|+++ .++|+|+++|++.
T Consensus 312 ~~~l~e~-----~~-~~~~~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~-~~~~~~~~~a~~~ 378 (423)
T 1htt_A 312 VLLVQAV-----NP-EFKADPVVDIYLVASG------ADTQSAAMALAERLRDELPGVKLMTNHGG-GNFKKQFARADKW 378 (423)
T ss_dssp HHHHHHH-----ST-TCCCCCSCSEEEEECS------TTHHHHHHHHHHHHHHHSTTCCEEECCSC-CCHHHHHHHHHHH
T ss_pred HHHHHhc-----Cc-CCCCCCCCcEEEEEcC------HHHHHHHHHHHHHHHcCCCCcEEEEeCCC-CCHHHHHHHHHHc
Confidence 8888775 23 4566799999999997 34778999999999999 9999999987 5999999999999
Q ss_pred CCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 260 GVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 260 GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
|+|++|+||++|+++|+|+||+|+++++..++++++++.+++++
T Consensus 379 g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 379 GARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp TCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred CCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887654
No 16
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=2.8e-47 Score=387.07 Aligned_cols=279 Identities=15% Similarity=0.129 Sum_probs=243.6
Q ss_pred cccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccC-cccccccceEEEecCCCCCCCcEE
Q 015762 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSGESDLEVPIA 81 (401)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh-~~~f~~e~y~~~~~g~~~l~~~l~ 81 (401)
.++.++|+++|+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| ++.+.+|||+|+|+++ +.++
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g----~~l~ 77 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGG----RSLT 77 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCC----CEEe
Confidence 4688999999999999999999999999999999999999999999999876687 8889999999999875 8999
Q ss_pred EcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
|||++|++++++++.+..+++++|+|+||+|+|||+| +|+.| |+|||+|.|+|++|.+.+.||+|++.++.++|+.+
T Consensus 78 Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e-~p~~g--R~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~l 154 (421)
T 1h4v_B 78 LRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAE-RPQKG--RYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL 154 (421)
T ss_pred eCCcchHHHHHHHHhccccccCCCeEEEEecCeecCC-CCCCC--CcccEEEccEEEECCCChhhhHHHHHHHHHHHHHc
Confidence 9999999999999988667889999999999999999 88888 99999999999999999999999999999999887
Q ss_pred Cccc---EEecC-------------------------------------------CC----------Cccc---------
Q 015762 162 LAVP---VIKGK-------------------------------------------KS----------ELEN--------- 176 (401)
Q Consensus 162 ~~ip---v~~g~-------------------------------------------k~----------~~e~--------- 176 (401)
+ ++ +..|. +. ...+
T Consensus 155 g-l~~~~i~i~~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 233 (421)
T 1h4v_B 155 G-LRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEA 233 (421)
T ss_pred C-CCceEEEEcCCCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHH
Confidence 5 32 11000 00 0000
Q ss_pred ---c------------------------------c--------------------------h---------------HHH
Q 015762 177 ---S------------------------------K--------------------------F---------------VQI 182 (401)
Q Consensus 177 ---f------------------------------n--------------------------F---------------Rli 182 (401)
+ . | |++
T Consensus 234 ~~~l~~~~~~l~~~g~~i~~D~~l~rg~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~igieRl~ 313 (421)
T 1h4v_B 234 RAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVA 313 (421)
T ss_pred HHHHHHHHHHHHHcCCeEEEecccccchhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeecHHHHH
Confidence 0 0 1 777
Q ss_pred HHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCC
Q 015762 183 GVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVP 262 (401)
Q Consensus 183 ~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP 262 (401)
++|.++ | .+||+.+|.||+|+|++ ++...+|.++++.||++ ++|++|+++ .++|+|+++|++.|+|
T Consensus 314 ~~l~e~-----~-~~~~~~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~-i~v~~d~~~-~~~~~~~~~a~~~g~p 379 (421)
T 1h4v_B 314 LALEAE-----G-FGLPEEKGPDLYLIPLT------EEAVAEAFYLAEALRPR-LRAEYALAP-RKPAKGLEEALKRGAA 379 (421)
T ss_pred HHHHhc-----C-cCCCCCCCCeEEEEECC------hHHHHHHHHHHHHHHhc-CEEEEecCC-CCHHHHHHHHHhCCCC
Confidence 777654 3 35666799999999997 45778999999999999 999999987 4999999999999999
Q ss_pred EEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 263 LRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 263 ~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
++|+||++|+++|+|+||+|+++++..++++++++.+.++|
T Consensus 380 ~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 380 FAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred EEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887654
No 17
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=8.8e-47 Score=388.01 Aligned_cols=279 Identities=15% Similarity=0.183 Sum_probs=240.2
Q ss_pred CcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccC-cccccccceEEEecC-CCCCCCc
Q 015762 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDH-IEGFAPEVAWVTKSG-ESDLEVP 79 (401)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh-~~~f~~e~y~~~~~g-~~~l~~~ 79 (401)
..+.+++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+++|| ++.+.++||.|.|++ + +.
T Consensus 30 ~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g----~~ 105 (467)
T 4e51_A 30 EKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNG----EN 105 (467)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTC----CE
T ss_pred cCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCC----CE
Confidence 35788999999999999999999999999999999999999999999999877698 777899999999987 5 89
Q ss_pred EEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 80 IAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 80 l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
++|||+.|++++++++.+..++ ++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++.++|+
T Consensus 106 l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E-~~~~g--R~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~ 181 (467)
T 4e51_A 106 LTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHE-RPQRG--RYRQFHQVGVEALGFAGPDADAEIVMMCQRLWE 181 (467)
T ss_dssp EEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCC-CC-----CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccC-CCCCC--CcCceEEEEEEEEeCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999988888 6999999999999999 77888 999999999999999999999999999999999
Q ss_pred HhCccc-E--EecC-------------------------------------------C-----------CCc--------
Q 015762 160 EFLAVP-V--IKGK-------------------------------------------K-----------SEL-------- 174 (401)
Q Consensus 160 ~l~~ip-v--~~g~-------------------------------------------k-----------~~~-------- 174 (401)
.++ ++ + ..|. + +..
T Consensus 182 ~lG-l~~~~i~in~~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~ 260 (467)
T 4e51_A 182 DLG-LTGIKLEINSLGLAEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVS 260 (467)
T ss_dssp HHT-CCCEEEEEEECCCHHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHH
T ss_pred HcC-CCceEEEEeCCCchhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHH
Confidence 986 42 1 1110 0 000
Q ss_pred -ccc------------------------c--------------------------------h---------------HHH
Q 015762 175 -ENS------------------------K--------------------------------F---------------VQI 182 (401)
Q Consensus 175 -e~f------------------------n--------------------------------F---------------Rli 182 (401)
+.| + | |++
T Consensus 261 ~~~l~~l~~~L~~~gi~~~~d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~GGRYD~Lv~~~g~~~~PavGfa~gleRl~ 340 (467)
T 4e51_A 261 RAHFEGLQRLLKANNVPFTINPRLVRGLDYYNLTVFEWVTDKLGAQGTVAAGGRYDPLIEQLGGKPTAACGWAMGIERIL 340 (467)
T ss_dssp HHHHHHHHHHHHHTTCCEEECTTCCCSCTTCCSEEEEEEECC----CEEEEEEECTHHHHHTTSSCCCEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEcCccccCccccCCeEEEEEECCCCCcceecCCCcHHHHHHHhCCCCCCceeehHHHHHHH
Confidence 000 0 1 999
Q ss_pred HHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCC----CCCCHHHHHHHHHH
Q 015762 183 GVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR----DNYSPGWKYSHWEM 258 (401)
Q Consensus 183 ~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~----~~~s~g~k~~~ae~ 258 (401)
.+|.+. |. +|. .+|.||+|+|++ ++...+|.++++.||++|++|++|.+ + .++|+|+++|++
T Consensus 341 ~~l~~~-----~~-~~~-~~p~~V~Vip~~------~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~-~sl~kq~~~A~~ 406 (467)
T 4e51_A 341 ELLKEE-----HL-VPE-QEGVDVYVVHQG------DAAREQAFIVAERLRDTGLDVILHCSADGAG-ASFKSQMKRADA 406 (467)
T ss_dssp HHHHHT-----TC-CCC-CCCCSEEEEECS------HHHHHHHHHHHHHHHHTTCCEEECCCTTSSC-CCHHHHHHHHHH
T ss_pred HHHHhc-----CC-ccc-CCCCeEEEEEcC------hHHHHHHHHHHHHHHHcCCeEEEEccccccc-CCHHHHHHHHHH
Confidence 988764 22 444 789999999998 66889999999999999999999998 5 599999999999
Q ss_pred hCCCEEEEeCccccCCCeEEEEECCC-C------ceeeechhhHHHHHHHHH
Q 015762 259 KGVPLRIEIGPKDLANDQVRAVRRDN-G------AKIDLPRGSLVERVKELL 303 (401)
Q Consensus 259 ~GvP~~iiiG~kE~~~~~V~v~~r~t-g------~k~~v~~~el~~~i~~~l 303 (401)
.|+|++|+||++|+++|+|+||+|++ + ++..|+++++++.+++.+
T Consensus 407 ~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 407 SGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp TTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred cCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 99999999999999999999999999 8 999999999999987766
No 18
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=1.5e-48 Score=398.73 Aligned_cols=292 Identities=14% Similarity=0.068 Sum_probs=232.5
Q ss_pred CCCccE-EecchHHHHHHHHHHHHHHHH--HHcCCeEeccCCccChhhhhhhc--cC---ccccccc----------ceE
Q 015762 6 DISGCY-IMRPWAISIWETMQKFFDAEI--KKMKIQNCYFPLFVSPTVLQKEK--DH---IEGFAPE----------VAW 67 (401)
Q Consensus 6 ~~~G~~-~~~P~g~~i~~~i~~~~~~~~--~~~G~~~i~tP~l~~~~l~~k~~--gh---~~~f~~e----------~y~ 67 (401)
+++|++ +|+|.|+.||++|++++++.+ .+.|+++|+||++.|.++|.+ + || ++.+.++ |+.
T Consensus 49 ~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~-s~~g~~~r~d~~~e~~~~~g~~~eem~~ 127 (454)
T 1g5h_A 49 LLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPR-DSAFRLVSPESIREILQDREPSKEQLVA 127 (454)
T ss_dssp HHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSC-CCCCEEECHHHHHHHHCC---CHHHHHH
T ss_pred CCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccc-cccCcccHHHHHHHHhhccCCCHHHHHH
Confidence 467988 999999999999999888874 589999999999999999964 4 67 7777665 221
Q ss_pred EEecCCCCCCCcEEEcCCCChhHHHHHHHhHhcCC-CCCeEEEeeeccee---cCCCCCCCcccchhheeccceeecCCh
Q 015762 68 VTKSGESDLEVPIAIRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVR---WEFSNPTPFIRSREFLWQEGHTAFATK 143 (401)
Q Consensus 68 ~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~s~~-~LPlk~~q~~~vfR---~E~~~~~gllR~REF~q~e~~~~~~~~ 143 (401)
... +..+++++|||+.+++++.+|++++.|++ +||++++|||+||| +|.+|..||+|+|||+|+|+|+ ++++
T Consensus 128 ~~~---~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~p 203 (454)
T 1g5h_A 128 FLE---NLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPT 203 (454)
T ss_dssp HHH---HHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECH
T ss_pred HHH---hhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCH
Confidence 100 00136899999999999999999999998 99999999999999 5998877999999999999998 5788
Q ss_pred hhHHHH---HHHHHHHHHHHhCcccE---Ee----cCCC--------------------------------Cccccc---
Q 015762 144 SEADDE---ILELYRRIYEEFLAVPV---IK----GKKS--------------------------------ELENSK--- 178 (401)
Q Consensus 144 ~~a~~e---il~~~~~i~~~l~~ipv---~~----g~k~--------------------------------~~e~fn--- 178 (401)
+++.++ +++.+.++|..|+ +|. .. +.+. ...+|+
T Consensus 204 e~~~e~~~~~~~~~~~~~~~lg-i~~~~~r~~~~~~~~a~~~~~ie~~~p~g~~e~~g~~~~td~~l~~~~~~s~~~l~y 282 (454)
T 1g5h_A 204 RTSSQWLDFWLRHRLLWWRKFA-MSPSNFSSADCQDELGRKGSKLYYSFPWGKEPIETLWNLGDQELLHTYPGNVSTIQG 282 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SSGGGEEEEEEECTTSCEEEEEEEEETTEEEEEEEEEEEESHHHHHHSTTCGGGSCE
T ss_pred hhHHHHHHHHHHHHHHHHHHcC-CCceeEEecCCHHHHHhcCCCcEEecCCCceEEEEecCCCHHHHHhccCCceeeEEE
Confidence 888777 7889999999875 652 10 0000 001110
Q ss_pred ---------------h---HHHHHHHHHcCC----------C---CCCCCCCCCCCceEEEE-EcCCCCCChhhHHHHHH
Q 015762 179 ---------------F---VQIGVMVMVHGD----------D---KGLMLPPKVASVQVIVI-PVPYKDADTQGIFDACT 226 (401)
Q Consensus 179 ---------------F---Rli~~li~~~~d----------d---~Gl~lP~~iap~qV~Ii-pi~~~~~~~~~~~~~a~ 226 (401)
+ |+++++++.+.+ | .|++||+++||+||+|+ |++. +++..++|.
T Consensus 283 ~d~~~~~~P~vi~~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~----~e~~~~~A~ 358 (454)
T 1g5h_A 283 RDGRKNVVPCVLSVSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGP----TVELRQVCQ 358 (454)
T ss_dssp EETTEEECCEEEEEEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSC----HHHHHHHHH
T ss_pred ECCCCcEeeEEEeCcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCC----cHHHHHHHH
Confidence 0 998777766533 2 36899999999999999 5431 256889999
Q ss_pred HHHHHHhhCCCEEE--EcCC-CCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 227 ATVEKLCEAGIRAN--SDFR-DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 227 ~l~~~Lr~~Girv~--iD~~-~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
+|++.|+++|++|+ +|++ + .++|+||++|++.|+|++|+||++|+++|+|+||+|++++|..|+++++++.|.+++
T Consensus 359 ~l~~~Lr~~Gi~v~~~~Ddr~~-~sigkk~r~Ad~~GiP~~IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l 437 (454)
T 1g5h_A 359 GLLNELLENGISVWPGYSETVH-SSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYL 437 (454)
T ss_dssp HHHHHHHHTTCCEEEGGGSCCC-SCHHHHHHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEecCCCC-CCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHH
Confidence 99999999999996 8987 6 599999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHH
Q 015762 304 EEVQE 308 (401)
Q Consensus 304 ~~~~~ 308 (401)
+.+|.
T Consensus 438 ~~~~~ 442 (454)
T 1g5h_A 438 ASASN 442 (454)
T ss_dssp HHHHH
T ss_pred hccch
Confidence 76553
No 19
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1.8e-46 Score=380.97 Aligned_cols=276 Identities=17% Similarity=0.242 Sum_probs=229.4
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhc-cCcccccccceEEEecCCCCCCCcEEE
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEK-DHIEGFAPEVAWVTKSGESDLEVPIAI 82 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~-gh~~~f~~e~y~~~~~g~~~l~~~l~L 82 (401)
++.++|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|.++. ||++.|.++||+++|+++ +.++|
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g----~~~~L 77 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGD----RSITL 77 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHH----CCEEE
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCC----CEEEe
Confidence 4789999999999999999999999999999999999999999999997543 799999999999998764 89999
Q ss_pred cCCCChhHHHHHHHhHhcC-CCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 83 RPTSETVMYPYFSKWIRGH-RDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~-~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
|||+|++++++++++..+| ++||+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+.+.+|+|++.++.++|+.+
T Consensus 78 rp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E-~~~~g--R~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~l 154 (420)
T 1qe0_A 78 RPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYE-RKQKG--RYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSF 154 (420)
T ss_dssp CSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC----------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHhccccccCCCCeEEEEecCEeecC-CCcCC--CcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHc
Confidence 9999999999999999898 89999999999999999 77777 99999999999999999999999999999999988
Q ss_pred Cccc-E--EecC------------------------------------------------CCCcc---------------
Q 015762 162 LAVP-V--IKGK------------------------------------------------KSELE--------------- 175 (401)
Q Consensus 162 ~~ip-v--~~g~------------------------------------------------k~~~e--------------- 175 (401)
+ ++ + ..|. ..-++
T Consensus 155 g-l~~~~i~l~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~ 233 (420)
T 1qe0_A 155 G-LKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKA 233 (420)
T ss_dssp T-CCCEEEEEEECCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHH
T ss_pred C-CCceEEEEcccCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHH
Confidence 6 44 2 1100 00000
Q ss_pred --------------cc------------------------c---------------------h---------------HH
Q 015762 176 --------------NS------------------------K---------------------F---------------VQ 181 (401)
Q Consensus 176 --------------~f------------------------n---------------------F---------------Rl 181 (401)
.+ . | |+
T Consensus 234 ~l~~l~~~l~~~gi~~~~d~~l~rg~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~vg~~igveRl 313 (420)
T 1qe0_A 234 YYEQVKAYLDDLGIPYTEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERL 313 (420)
T ss_dssp HHHHHHHHHHHHTCCCEECTTCCCCCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEEEEEEEEHHHH
T ss_pred HHHHHHHHHHHcCCeEEECcccccchhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCEEEEEecHHHH
Confidence 00 0 1 99
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCC
Q 015762 182 IGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 261 (401)
Q Consensus 182 i~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~Gv 261 (401)
+++| +. .|+.||+ ++|+||+|+|++ ++..++|.++++.||++|++|.+|+++ .++|+|+++|++.|+
T Consensus 314 ~~~l-e~----~~~~~p~-~~p~~v~i~~~~------~~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~~~a~~~g~ 380 (420)
T 1qe0_A 314 LLAL-EE----EGIELDI-EENLDLFIVTMG------DQADRYAVKLLNHLRHNGIKADKDYLQ-RKIKGQMKQADRLGA 380 (420)
T ss_dssp HHHH-HH----TTCCCCC-CCCCSEEEEECH------HHHHHHHHHHHHHHHTTTCCEEECCSC-CCHHHHHHHHHHTTC
T ss_pred HHHH-Hh----cCCCCCC-CCCCeEEEEEeC------HHHHHHHHHHHHHHHHCCCEEEEecCC-CCHHHHHHHHHHcCC
Confidence 9987 54 3578888 899999999997 567889999999999999999999987 599999999999999
Q ss_pred CEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHH
Q 015762 262 PLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVK 300 (401)
Q Consensus 262 P~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~ 300 (401)
|++|+||++|+++|+|+||+|+++++..++++++++.++
T Consensus 381 p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 381 KFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp SEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred CEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999999999999999999999999999999988774
No 20
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=3e-46 Score=381.06 Aligned_cols=275 Identities=15% Similarity=0.148 Sum_probs=240.7
Q ss_pred cccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEE
Q 015762 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAI 82 (401)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~L 82 (401)
++..++|++||+|.++++|++|++.+++.|+++||++|.||+|++.++|.+++|| .+.++||+|+|+++ +.++|
T Consensus 5 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~--~~~~em~~~~D~~g----~~l~L 78 (434)
T 1wu7_A 5 QIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGE--ELLQQTYSFVDKGG----REVTL 78 (434)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCT--TGGGGSCEEECTTS----CEEEE
T ss_pred ccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCC--ccccceEEEECCCC----CEEEe
Confidence 4678999999999999999999999999999999999999999999999877898 68999999999875 99999
Q ss_pred cCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
|||.|++++++++.+ +++ ++|+|+||+|+|||+| +|+.| |+|||+|.|+|++|.+.+.||+|++.++.++|+.++
T Consensus 79 rPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~e-rp~~g--R~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lg 153 (434)
T 1wu7_A 79 IPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYE-EPQAG--RYREHYQFNADIFGSDSPEADAEVIALASSILDRLG 153 (434)
T ss_dssp CSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCC-CSCSS--CCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCC-CCCCC--CccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcC
Confidence 999999999999888 776 8999999999999999 88888 999999999999999999999999999999999886
Q ss_pred ccc--EE--e-----------cC-CCC-------------------------------------------cc--------
Q 015762 163 AVP--VI--K-----------GK-KSE-------------------------------------------LE-------- 175 (401)
Q Consensus 163 ~ip--v~--~-----------g~-k~~-------------------------------------------~e-------- 175 (401)
++ +. . +. ..+ +.
T Consensus 154 -l~~~~~i~l~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 232 (434)
T 1wu7_A 154 -LQDIYEIRINSRKIMEEIIGGMTSSDPFSVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDEMARIT 232 (434)
T ss_dssp -TTTSEEEEEEEHHHHHHHHHTTCSSCHHHHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHHHHHHT
T ss_pred -CCCceEEEECChhhHHHHHHHhCcHhHHHHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 44 31 0 11 000 00
Q ss_pred ----------------------c-c-----------------------------------------ch------------
Q 015762 176 ----------------------N-S-----------------------------------------KF------------ 179 (401)
Q Consensus 176 ----------------------~-f-----------------------------------------nF------------ 179 (401)
. + .|
T Consensus 233 ~~~~~~~~~l~~~~~~l~~~g~~~i~~D~~l~rgldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~Gf~i 312 (434)
T 1wu7_A 233 GKSSEEIARMAAVEDLLASYGVKNVRYDFSIVRGLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAVGFGM 312 (434)
T ss_dssp TCCCHHHHHHHHHHHHHHHTTCCCCEECTTCCTTTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeEEEEE
Confidence 0 1 01
Q ss_pred ---HHHHHHHHHcCCCCCCCC-CCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHH
Q 015762 180 ---VQIGVMVMVHGDDKGLML-PPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSH 255 (401)
Q Consensus 180 ---Rli~~li~~~~dd~Gl~l-P~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ 255 (401)
|++++|+++ | .| |+ +|.||+|+|++ ++...+|.++++.||++|++|++|+++ .++|+|+++
T Consensus 313 gveRl~~~l~e~-----~-~~~p~--~p~~v~v~~~~------~~~~~~a~~l~~~Lr~~Gi~v~~d~~~-~~~~~~~~~ 377 (434)
T 1wu7_A 313 GDAVISLLLKRE-----N-VQIPR--EKKSVYICRVG------KINSSIMNEYSRKLRERGMNVTVEIME-RGLSAQLKY 377 (434)
T ss_dssp EHHHHHHHHHHT-----T-CCCCC--SSCEEEEEEES------SCCHHHHHHHHHHHHTTTCEEEECCSC-CCHHHHHHH
T ss_pred cHHHHHHHHHhc-----C-CccCC--CCCcEEEEEcC------hHHHHHHHHHHHHHHHCCCeEEEecCC-CCHHHHHHH
Confidence 777777654 2 45 65 89999999997 235688999999999999999999987 499999999
Q ss_pred HHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 256 WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 256 ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
|++.|+|++|+||++|+++|+|+|++|+++++..++++++++.+.++|.
T Consensus 378 a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~~ 426 (434)
T 1wu7_A 378 ASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQAT 426 (434)
T ss_dssp HHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCCC
T ss_pred HHHCCCCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999887654
No 21
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-46 Score=379.93 Aligned_cols=274 Identities=14% Similarity=0.056 Sum_probs=223.1
Q ss_pred cCCCccE-EecchHHHHHHHHHHHHHHHHH-HcC-CeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEE
Q 015762 5 YDISGCY-IMRPWAISIWETMQKFFDAEIK-KMK-IQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (401)
Q Consensus 5 ~~~~G~~-~~~P~g~~i~~~i~~~~~~~~~-~~G-~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~ 81 (401)
+.+.|++ +|+|.|+.|+++|++.+++.+. +.| +.+|+||+ .++| +.||||+.|. ++
T Consensus 90 ~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~---~~~~-~~SGH~d~~~-----------------~~ 148 (459)
T 3ikl_A 90 SLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALH---HKPG-PLLPGDSAFR-----------------GG 148 (459)
T ss_dssp HHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCS---BCCS-CCCSSCSCCT-----------------TB
T ss_pred CCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeecccc---cccc-ccCcchhhhc-----------------ce
Confidence 3477888 9999999999999996666664 355 77899999 4447 5899999987 68
Q ss_pred EcCCCChhHHHHHHHhHhcCC-CCCeEEEeeecceecCC---CCCCCcccchhheeccceeecCChhhHHHH---HHHHH
Q 015762 82 IRPTSETVMYPYFSKWIRGHR-DLPLKLNQWCNVVRWEF---SNPTPFIRSREFLWQEGHTAFATKSEADDE---ILELY 154 (401)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~-~LPlk~~q~~~vfR~E~---~~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~ 154 (401)
|||+.++++...|++++.||+ +||+++.|+|+|||+|. .+.+|++|+|||+|.|+|+ +++++++.++ +++..
T Consensus 149 LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~~~~~~ 227 (459)
T 3ikl_A 149 LRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDFWLRHR 227 (459)
T ss_dssp -CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHHHHHHH
T ss_pred ECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHHHHHHH
Confidence 999999999999999999999 99999999999999994 5677999999999999998 7888888777 77888
Q ss_pred HHHHHHhCccc---EEe----cCCCC------------ccc---------c--------------------ch-------
Q 015762 155 RRIYEEFLAVP---VIK----GKKSE------------LEN---------S--------------------KF------- 179 (401)
Q Consensus 155 ~~i~~~l~~ip---v~~----g~k~~------------~e~---------f--------------------nF------- 179 (401)
..+|..|+ +| +.. +.... +.. | +|
T Consensus 228 ~~~~~~LG-i~~~~~r~~~~~~eeA~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~~~~~~~~~~~~~dg~~k~~P~vi~~ 306 (459)
T 3ikl_A 228 LQWWRKFA-MSPSNFSSSDCQDEEGRKGNKLYYNFPWGKELIETLWNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSV 306 (459)
T ss_dssp HHHHHHHC-SSGGGEEEEEECCSSSSCEEEEEEECSSCEEEEEEEEEEETHHHHHHSCSCSSSSCCBSSSCBCCCEEEEE
T ss_pred HHHHHHhC-CChhhEEEeecCchHHHhhcCeEEEcCCceEEEeeeeccchhhhhccccccCceeEccCCCeeeeeEEEEe
Confidence 88999886 65 210 11100 000 0 01
Q ss_pred -----HHHHHHHHHcCCCCC-------------CCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEE-
Q 015762 180 -----VQIGVMVMVHGDDKG-------------LMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRAN- 240 (401)
Q Consensus 180 -----Rli~~li~~~~dd~G-------------l~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~- 240 (401)
|++.++++.+.|+.| ++||+++||+||+|+ +..++ ++++.++|.+|++.|+++||+|+
T Consensus 307 s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Ii-i~~~~--~e~~~~~A~~L~~~Lr~~GIrV~~ 383 (459)
T 3ikl_A 307 NGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALD-VGRGP--TLELRQVCQGLFNELLENGISVWP 383 (459)
T ss_dssp EEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEE-ESSCC--STTHHHHHHHHHHHHHHTSCCEEC
T ss_pred cccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEE-eCCCC--CHHHHHHHHHHHHHHHHCCCeEEE
Confidence 999889888777666 999999999999999 55321 25689999999999999999999
Q ss_pred -EcCC-CCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHHH
Q 015762 241 -SDFR-DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLEE 305 (401)
Q Consensus 241 -iD~~-~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~~ 305 (401)
+|++ + .++|+||++|+++||||+|+||++|+++|+|+||+|+|++|..|+++++++.|.++++.
T Consensus 384 d~Ddr~~-~siGkK~r~Ad~iGiPy~IiVG~kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 384 GYLETMQ-SSLEQLYSKYDEMSILFTVLVTETTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp GGGSSSC-CTTHHHHHHHGGGTCSEEEEECTTSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred eecCCcC-CCHHHHHHHHHHcCCCEEEEECchhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 8887 5 59999999999999999999999999999999999999999999999999999887765
No 22
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.3e-44 Score=374.79 Aligned_cols=277 Identities=18% Similarity=0.183 Sum_probs=222.5
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEc
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LR 83 (401)
.+.++||+||+|.++.+|++|++.++++|+++||++|.||+|++.++|.+++|+. .++||.|+|+++ +.++||
T Consensus 67 l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~---~~~my~f~D~~g----~~l~LR 139 (517)
T 4g85_A 67 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---SKLIYDLKDQGG----ELLSLR 139 (517)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC---------CSCBBCCTTS----CCEEEC
T ss_pred eeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC---cceeEEEECCCC----CEEEeC
Confidence 4689999999999999999999999999999999999999999999998777653 578999999985 899999
Q ss_pred CCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC--CCCcccchhheeccceeecC-ChhhHHHHHHHHHHHHHHH
Q 015762 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN--PTPFIRSREFLWQEGHTAFA-TKSEADDEILELYRRIYEE 160 (401)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~--~~gllR~REF~q~e~~~~~~-~~~~a~~eil~~~~~i~~~ 160 (401)
|+.|++++++++ +++.+|+|+||+|+|||+| +| ++| |+|||+|+++|++|. ++..+|+|++.++.++|+.
T Consensus 140 Pd~T~~~aR~~~----~~~~~p~k~yyig~vfR~E-rp~~~~G--R~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 140 YDLTVPFARYLA----MNKLTNIKRYHIAKVYRRD-NPAMTRG--RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp SCSHHHHHHHHH----HTTCSCEEEEEEEEEECCC-C---------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHH----hCCCCCceeEEEeceEecc-CcccccC--ccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 999999888765 3567899999999999999 77 457 999999999999986 4557899999999999998
Q ss_pred hCccc---EEec-------------C----------------CCCcc---------------------------------
Q 015762 161 FLAVP---VIKG-------------K----------------KSELE--------------------------------- 175 (401)
Q Consensus 161 l~~ip---v~~g-------------~----------------k~~~e--------------------------------- 175 (401)
++ +. +..| . +..++
T Consensus 213 lg-l~~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~ 291 (517)
T 4g85_A 213 LQ-IGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLV 291 (517)
T ss_dssp HC-CCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHH
T ss_pred hc-CCcccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHH
Confidence 86 22 1000 0 00000
Q ss_pred ------------------------------------cc----------c-------------------------------
Q 015762 176 ------------------------------------NS----------K------------------------------- 178 (401)
Q Consensus 176 ------------------------------------~f----------n------------------------------- 178 (401)
++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~G 371 (517)
T 4g85_A 292 EQLLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAG 371 (517)
T ss_dssp HHHHHCHHHHTCHHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCCCCTTTCSSEEEEEEEC-------------CCSEEE
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHHHhhCCCcceeeccccccCCcccCCeEEEEEECCcccccccCCcccceecCC
Confidence 00 0
Q ss_pred ---------h-----------------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHH
Q 015762 179 ---------F-----------------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKL 232 (401)
Q Consensus 179 ---------F-----------------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~L 232 (401)
| |++.+|.+. . .++.+|.+.+|++|+|++++ ++...+|.+|++.|
T Consensus 372 GRYD~Lv~~f~~~G~~~pavGfa~gierl~~~le~~-~--~~~~~~~~~~~~~V~v~~~~------~~~~~~a~~l~~~L 442 (517)
T 4g85_A 372 GRYDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQR-L--EALEEKIRTTETQVLVASAQ------KKLLEERLKLVSEL 442 (517)
T ss_dssp EECHHHHHTTSSSCCCCCEEEEEECHHHHHHHHHHH-H--HHTTCCCCSCCCCEEEEESS------SSCHHHHHHHHHHH
T ss_pred CchhHHHHHhccCCCCCCcccccchHHHHHHHHHHh-c--cccCccccCCCCEEEEEeCC------HHHHHHHHHHHHHH
Confidence 0 665555332 1 12344556678999999987 45678899999999
Q ss_pred hhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 233 CEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 233 r~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
|++||+|++|+..+.++++||++|++.|+|++|+||++|+++|+|+||++.||++.+|++++|++.|++.+.
T Consensus 443 r~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 514 (517)
T 4g85_A 443 WDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 514 (517)
T ss_dssp HHTTCCEEECSSSSCCHHHHHHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHCC
T ss_pred HHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 999999999875445899999999999999999999999999999999999999999999999999987754
No 23
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.7e-44 Score=365.45 Aligned_cols=277 Identities=18% Similarity=0.178 Sum_probs=224.3
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEc
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LR 83 (401)
...++||+||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.+++|+. .++||.|+|+++ +.++||
T Consensus 14 ~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~---~~~~y~f~D~~g----~~l~LR 86 (464)
T 4g84_A 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED---SKLIYDLKDQGG----ELLSLR 86 (464)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-------CCCBBCCCSS----CCEEEC
T ss_pred eeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC---cceeEEEECCCC----CEEEeC
Confidence 4679999999999999999999999999999999999999999999998776643 579999999985 899999
Q ss_pred CCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecC-ChhhHHHHHHHHHHHHHHHhC
Q 015762 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~eil~~~~~i~~~l~ 162 (401)
|+.|++++++++ +++.+|+|+||+|+|||+| +|+.+..|+|||+|.++|++|. ++..+|+|++.++.++|+.++
T Consensus 87 Pd~T~~~aR~~~----~~~~~p~k~~y~g~vfR~e-rp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lg 161 (464)
T 4g84_A 87 YDLTVPFARYLA----MNKLTNIKRYHIAKVYRRD-NPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQ 161 (464)
T ss_dssp SCSHHHHHHHHH----HTTCSCEEEEEEEEEECCC-C------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHT
T ss_pred CcCcHHHHHHHH----hcCCCCceeEEEecceecc-CCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhC
Confidence 999999888765 3567899999999999999 8755555999999999999986 456789999999999999886
Q ss_pred ccc---EEec-------------C----------------CCCcc-----------------------------------
Q 015762 163 AVP---VIKG-------------K----------------KSELE----------------------------------- 175 (401)
Q Consensus 163 ~ip---v~~g-------------~----------------k~~~e----------------------------------- 175 (401)
+. +..| . +..++
T Consensus 162 -l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 240 (464)
T 4g84_A 162 -IGDFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQ 240 (464)
T ss_dssp -CCCEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHHHH
T ss_pred -CCCcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHH
Confidence 32 1000 0 00000
Q ss_pred ----------------------------------cc--------------------------------------------
Q 015762 176 ----------------------------------NS-------------------------------------------- 177 (401)
Q Consensus 176 ----------------------------------~f-------------------------------------------- 177 (401)
++
T Consensus 241 ~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lvrgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGR 320 (464)
T 4g84_A 241 LLQDPKLSQNKQALEGLGDLKLLFEYLTLFGIDDKISFDLSLARGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGR 320 (464)
T ss_dssp HTTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCCCCTTTCSSEEEEEEEEECC-------EEEEEEEEEEE
T ss_pred HHhcccccccHHHHHHHHHHHHHHhHHHhhCCCcceeecccccCCCcCcCCeEEEEEECCcccccccCCcccceeccCCc
Confidence 00
Q ss_pred ------ch-----------------HHHHHHHHHcCCCCCCCCCC--CCCCceEEEEEcCCCCCChhhHHHHHHHHHHHH
Q 015762 178 ------KF-----------------VQIGVMVMVHGDDKGLMLPP--KVASVQVIVIPVPYKDADTQGIFDACTATVEKL 232 (401)
Q Consensus 178 ------nF-----------------Rli~~li~~~~dd~Gl~lP~--~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~L 232 (401)
.| |++.+|.+.. ..+|+ +..+.+|+|++++ ++...+|.+|++.|
T Consensus 321 YD~L~~~~~~~g~~~pavGfaigieRl~~~l~~~~-----~~~~~~~~~~~~~v~v~~~~------~~~~~~a~~l~~~L 389 (464)
T 4g84_A 321 YDGLVGMFDPKGRKVPCVGLSIGVERIFSIVEQRL-----EALEEKIRTTETQVLVASAQ------KKLLEERLKLVSEL 389 (464)
T ss_dssp CCSTGGGTSTTCCCCCEEEEEECHHHHHHHHHHHH-----HTTTCCCCSCCCCEEEECSS------SSCHHHHHHHHHHH
T ss_pred hhHHHHHhccCCCCCCCccccccHHHHHHHHHHhc-----cccCcccccccceEEEEeCC------HHHHHHHHHHHHHH
Confidence 00 8887775542 23443 3456788888877 45678899999999
Q ss_pred hhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHHHHHHHHHH
Q 015762 233 CEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLVERVKELLE 304 (401)
Q Consensus 233 r~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l~ 304 (401)
|++||+|++|+..+.++++||++|++.|+|++|+||++|+++|+|+||++.||+|.+|+++++++.|++.+.
T Consensus 390 r~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~elv~~lk~~l~ 461 (464)
T 4g84_A 390 WDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRREDLVEEIKRRTG 461 (464)
T ss_dssp HHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHHT
T ss_pred HHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHHHHHHHHHHhc
Confidence 999999999875445899999999999999999999999999999999999999999999999999988764
No 24
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=1.7e-42 Score=356.23 Aligned_cols=279 Identities=16% Similarity=0.190 Sum_probs=228.4
Q ss_pred CcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCccccccc-ceEEEec---CCC---
Q 015762 2 IEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKS---GES--- 74 (401)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e-~y~~~~~---g~~--- 74 (401)
+++.+++||+||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.++ | +. .+| ||.|.|+ |+.
T Consensus 10 ~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G--~~-~ke~m~~~~d~~~~g~~~~~ 85 (465)
T 3net_A 10 INFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G--NQ-GDNIIYGLEPILPPNRQAEK 85 (465)
T ss_dssp CCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G--CC---CBEEEEEEEC--------
T ss_pred ccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C--CC-CccceEEEeccccccccccc
Confidence 56789999999999999999999999999999999999999999999999876 6 32 478 9999998 300
Q ss_pred -----CCCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhH--H
Q 015762 75 -----DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEA--D 147 (401)
Q Consensus 75 -----~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a--~ 147 (401)
.-++.++|||+.|++++++++.... +.++|+|+||+|+|||+| +|++| |+|||+|+++|++|.+...| |
T Consensus 86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~-~~~~p~r~~y~g~vfR~e-~~~~g--r~Ref~Q~g~ei~G~~~~~a~~D 161 (465)
T 3net_A 86 DKSGDTGSEARALKFDQTVPLAAYIARHLN-DLTFPFARYQMDVVFRGE-RAKDG--RFRQFRQCDIDVVGREKLSLLYD 161 (465)
T ss_dssp --------CCEEECSCSHHHHHHHHHHHGG-GSCSSEEEEECCEEECBC---------CCEEEEEEEEEECSSCCCHHHH
T ss_pred ccccCCCCCEEEeCCCChHHHHHHHHhccc-ccCCCeEEEEeccEEecC-CCCCC--CcceeEEeeEEEECCCCccchhh
Confidence 0038999999999999999988764 568999999999999999 88999 99999999999999999999 9
Q ss_pred HHHHHHHHHHHHHhCccc-E--Ee--------------------------------------------------------
Q 015762 148 DEILELYRRIYEEFLAVP-V--IK-------------------------------------------------------- 168 (401)
Q Consensus 148 ~eil~~~~~i~~~l~~ip-v--~~-------------------------------------------------------- 168 (401)
+|++.++.++++.++ ++ + ..
T Consensus 162 aEvi~l~~~~l~~lg-l~~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~ 240 (465)
T 3net_A 162 AQMPAIITEIFEAVN-IGDFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKII 240 (465)
T ss_dssp HHHHHHHHHHHHHHT-CSCEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHH
Confidence 999999999998876 32 1 00
Q ss_pred ------cCC--------------C------------------C--ccc----c---------------------------
Q 015762 169 ------GKK--------------S------------------E--LEN----S--------------------------- 177 (401)
Q Consensus 169 ------g~k--------------~------------------~--~e~----f--------------------------- 177 (401)
|.. . . ... +
T Consensus 241 ~l~~~~g~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvrgldYYtG~vFe~~~~~~~~ 320 (465)
T 3net_A 241 DFVKIDGSVDDVLDKLKHLSQTLPESEQFNLGVSELETVITGVRNLGVPDKRFCIDLAIARGLNYYTGTVYETTLIGHEA 320 (465)
T ss_dssp HHHTCCSCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCCCSSSEEEEEEEEEETTCGG
T ss_pred HHHHhcCChHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHhcccccCceEEEccCccCCCcccCceEEEEEECCCCc
Confidence 000 0 0 002 2
Q ss_pred ---------------ch---------------HHHHHHHHHcCCCCCCCCCC-CCCCceEEEEEcCCCCCChhhHHHHHH
Q 015762 178 ---------------KF---------------VQIGVMVMVHGDDKGLMLPP-KVASVQVIVIPVPYKDADTQGIFDACT 226 (401)
Q Consensus 178 ---------------nF---------------Rli~~li~~~~dd~Gl~lP~-~iap~qV~Iipi~~~~~~~~~~~~~a~ 226 (401)
.| |++++|.++ | .+|+ +.+|.||+|+|++ ++...+|.
T Consensus 321 ~~~i~~GGRYD~L~~~f~g~~~pavGfaiGieRli~~L~e~-----g-~~p~~~~~p~~V~Vi~~~------~~~~~~A~ 388 (465)
T 3net_A 321 LGSICSGGRYEELVGTFIGEKMPGVGISIGLTRLISRLLKA-----G-ILNTLPPTPAQVVVVNMQ------DELMPTYL 388 (465)
T ss_dssp GCCSSEEEEESSSSGGGTCSCCCEEEEEEEHHHHHHHHHHT-----T-SSCCCCSCSCCEEECCSC------GGGHHHHH
T ss_pred cceecccccHHHHhhhhcCCCCceeeeeccHHHHHHHHHHc-----C-CCCCcCCCCCeEEEEEcC------HHHHHHHH
Confidence 01 777776654 3 3786 7899999999987 56778999
Q ss_pred HHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCC-eEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 227 ATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAND-QVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 227 ~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~-~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
++++.||++|++|++|+++ .++|+|+++|++.|+|++|+||++ +++| +|+||+|++++|..|+++++++.+++.+
T Consensus 389 ~la~~LR~~Gi~ve~d~~~-~sl~~q~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 389 KVSQQLRQAGLNVITNFEK-RQLGKQFQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp HHHHHHHHTTCCEEECCSC-CCHHHHHHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred HHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 9999999999999999987 599999999999999999999999 9999 9999999999999999999999887653
No 25
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=1.5e-41 Score=347.75 Aligned_cols=271 Identities=17% Similarity=0.172 Sum_probs=215.8
Q ss_pred CCcccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcE
Q 015762 1 MIEYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPI 80 (401)
Q Consensus 1 l~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l 80 (401)
|+.+.+++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+++||. +.++||+|.|+++ +.+
T Consensus 26 m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~--~~~~my~f~D~~g----~~l 99 (456)
T 3lc0_A 26 MVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEE--ITEQMFNFITKGG----HRV 99 (456)
T ss_dssp CCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCH--HHHTCEEEECSSS----CEE
T ss_pred cccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccc--hhhceEEEEcCCC----CEE
Confidence 5678899999999999999999999999999999999999999999999998777873 7899999999875 899
Q ss_pred EEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 81 AIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 81 ~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
+|||+.|++++++++.... ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|++|.+...+|+|++.++.++|+.
T Consensus 100 ~LRpd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 100 ALRPEMTPSLARLLLGKGR-SLLLPAKWYSIPQCWRYE-AITRG--RRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp EECSCSHHHHHHHHHHSCT-TCCSSEEEEECCEEECCC-C-------CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred ecCCcCHHHHHHHHHhcCc-ccCCCEEEEEeccEEecC-CCCCC--CccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 9999999999999988754 568999999999999999 78889 9999999999999999999999999999999998
Q ss_pred hCcc---cE--Ee-------------cCCC----------------Ccc-----------------c-------------
Q 015762 161 FLAV---PV--IK-------------GKKS----------------ELE-----------------N------------- 176 (401)
Q Consensus 161 l~~i---pv--~~-------------g~k~----------------~~e-----------------~------------- 176 (401)
++ + .+ .. |... .++ +
T Consensus 176 lg-l~~~~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l 254 (456)
T 3lc0_A 176 LG-LSSKDVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEI 254 (456)
T ss_dssp TT-CCTTTEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHH
T ss_pred cC-CCCCceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHH
Confidence 86 5 22 10 1000 000 0
Q ss_pred ----------c---------------------c---------------------------------------h-------
Q 015762 177 ----------S---------------------K---------------------------------------F------- 179 (401)
Q Consensus 177 ----------f---------------------n---------------------------------------F------- 179 (401)
| | |
T Consensus 255 ~~~l~~~~~~~~~L~~l~~~l~~~gi~~~~~~D~~lvRgldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~P 334 (456)
T 3lc0_A 255 AQRVGEEHEAVKELRQFFEQVEAYGYGDWVLFDASVVRGLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIP 334 (456)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHTCGGGEEECTTCCCSCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHcCCCceEEEecCccCCccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCC
Confidence 0 0 0
Q ss_pred ---------HHHHHHHHHcCCCCCCCCCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHH
Q 015762 180 ---------VQIGVMVMVHGDDKGLMLPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSPG 250 (401)
Q Consensus 180 ---------Rli~~li~~~~dd~Gl~lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g 250 (401)
|++.+|.+. | .+|+.-.+.+|+|++.+ ++...++.++++.||++|++|++|... .+++
T Consensus 335 avGFaig~eRl~~~l~~~-----~-~~~~~~~~~~v~v~~~~------~~~~~~a~~la~~LR~~Gi~ve~~~~~-~slk 401 (456)
T 3lc0_A 335 CAGFGFGDCVIVELLQEK-----R-LLPDIPHVVDDVVIPFD------ESMRPHALAVLRRLRDAGRSADIILDK-KKVV 401 (456)
T ss_dssp EEEEEEESSHHHHHHHHT-----T-CCCCCCCCEEEEEEESS------GGGHHHHHHHHHHHHHTTCCEEECCSC-CCHH
T ss_pred EEEEEeEHHHHHHHHHhc-----C-CCCccCCCCcEEEEEcC------HHHHHHHHHHHHHHHHCCCeEEEecCC-CCHH
Confidence 777766442 2 23433345689999987 456688999999999999999999987 4899
Q ss_pred HHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhH
Q 015762 251 WKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSL 295 (401)
Q Consensus 251 ~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el 295 (401)
+++++|++.|+|++|+||++|+++|+|+||++.||+|..+++++.
T Consensus 402 kq~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 402 QAFNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp HHHHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred HHHHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 999999999999999999999999999999999999998887664
No 26
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=3.6e-35 Score=297.62 Aligned_cols=194 Identities=15% Similarity=0.215 Sum_probs=167.3
Q ss_pred CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCC
Q 015762 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (401)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~ 86 (401)
.+|+++|+|.|+.++++|++++++.+.++||++|.||+|++.++|. .+||+++|.++||++++ +.++||||+
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~~-------~~l~LrPt~ 232 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILI-GTGQLPKFEEDLYKCER-------DNLYLIPTA 232 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHH-HHSCTTTTGGGSCBCTT-------TCCEECSST
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHH-hcCCCCcChhhheEecC-------CeEEEcCCC
Confidence 5999999999999999999999999999999999999999999996 58999999999998852 679999999
Q ss_pred ChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhhHH---HHHHHHHHHHHH
Q 015762 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEAD---DEILELYRRIYE 159 (401)
Q Consensus 87 e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~---~eil~~~~~i~~ 159 (401)
|++++.+|++++.++++||+|++|+|+|||+|.. +++|++|+|||+|.|+|+++. +++++ +++++++.++|+
T Consensus 233 e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~-pe~s~~~~~e~i~~~~~il~ 311 (425)
T 2dq3_A 233 EVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH-PDTSYDELEKLVKDAEEVLQ 311 (425)
T ss_dssp HHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999973 578999999999999999654 45666 449999999999
Q ss_pred HhCcccEEe-----cCCC--Ccccc----------------------c-------------------h------------
Q 015762 160 EFLAVPVIK-----GKKS--ELENS----------------------K-------------------F------------ 179 (401)
Q Consensus 160 ~l~~ipv~~-----g~k~--~~e~f----------------------n-------------------F------------ 179 (401)
.++ +|+.. |... ....| + |
T Consensus 312 ~LG-L~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~ 390 (425)
T 2dq3_A 312 LLG-LPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVG 390 (425)
T ss_dssp HHT-CCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHH
T ss_pred HCC-CceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCccccCcccCCeEEECCCCCeeEEEEEEeccccHHH
Confidence 986 88631 1110 00000 1 1
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce-EEEEE
Q 015762 180 VQIGVMVMVHGDDKG-LMLPPKVASVQ-VIVIP 210 (401)
Q Consensus 180 Rli~~li~~~~dd~G-l~lP~~iap~q-V~Iip 210 (401)
|+|++|+|+|++++| ++||++++|+| +-+|+
T Consensus 391 R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 391 RTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp HHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred HHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 999999999999999 99999999999 65553
No 27
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=298.76 Aligned_cols=205 Identities=17% Similarity=0.208 Sum_probs=170.2
Q ss_pred CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCC----CCCCcEEE
Q 015762 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGES----DLEVPIAI 82 (401)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~----~l~~~l~L 82 (401)
.+|+++|+|.|+++++.|++++++.+.++||++|.||.|.+.++|. .+|||++|.++||++++.|.. ..+++++|
T Consensus 190 Gsgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~-~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L 268 (522)
T 3vbb_A 190 GSRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQ-EVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYL 268 (522)
T ss_dssp STTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHSCCC-CCSCCCEEC------------CCEEE
T ss_pred CcceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHh-hcCCcccCcccceEeecCCccccccccCcceeE
Confidence 5899999999999999999999999999999999999999999995 799999999999999876421 12478999
Q ss_pred cCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCC----CCCCCcccchhheeccceeecCChhh--HHHH---HHHH
Q 015762 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATKSE--ADDE---ILEL 153 (401)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~~~--a~~e---il~~ 153 (401)
+||+|++++.+|++++.||++||+|++|+++|||+|. ++++||+|+|||+|.|+|++. ++++ ++++ ++++
T Consensus 269 ~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~-~pe~e~s~~e~e~ml~~ 347 (522)
T 3vbb_A 269 IATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYS-SPHDNKSWEMFEEMITT 347 (522)
T ss_dssp CSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEE-CSSTTHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEe-CCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 357899999999999999954 4444 6655 9999
Q ss_pred HHHHHHHhCcccEEe-----cCC--CCcccc-------------------------------------------ch----
Q 015762 154 YRRIYEEFLAVPVIK-----GKK--SELENS-------------------------------------------KF---- 179 (401)
Q Consensus 154 ~~~i~~~l~~ipv~~-----g~k--~~~e~f-------------------------------------------nF---- 179 (401)
|.+||+.|+ +|+.. |.. +...+| .|
T Consensus 348 ~e~il~~LG-Lpyrvv~l~tgdlg~~asktyDiE~w~P~~~~y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtl 426 (522)
T 3vbb_A 348 AEEFYQSLG-IPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHML 426 (522)
T ss_dssp HHHHHHHTT-CCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEE
T ss_pred HHHHHHHcC-CceEEEEcCCccCCCchhheeceeEecCCCCceeEEEEecCCCCCccceeeeEEccccccCCCeeeceEE
Confidence 999999885 88632 111 000001 02
Q ss_pred --------HHHHHHHHHcCCCCCCCCCCCCCCceE----EEEEcCCC
Q 015762 180 --------VQIGVMVMVHGDDKGLMLPPKVASVQV----IVIPVPYK 214 (401)
Q Consensus 180 --------Rli~~li~~~~dd~Gl~lP~~iap~qV----~Iipi~~~ 214 (401)
|+|++|+++|++++|+++|+.++|+.. .|+|+..+
T Consensus 427 Ngs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~~ 473 (522)
T 3vbb_A 427 NATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVKP 473 (522)
T ss_dssp EEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCSC
T ss_pred eccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCCC
Confidence 999999999999999999999999987 79998754
No 28
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=7.4e-35 Score=297.13 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=165.9
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
..+|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|. .+||+++|.++||++++ ++++||||
T Consensus 181 ~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~d-------~~l~LrPt 252 (455)
T 2dq0_A 181 SGSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEE-GSTSFEDFEDVIYKVED-------EDLYLIPT 252 (455)
T ss_dssp TCTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHH-TTSCTTHHHHTCCBBTT-------SSCEECSS
T ss_pred cCCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHH-hcCCCCCChHhhCeecC-------CcEEEcCc
Confidence 45899999999999999999999999999999999999999999996 57999999999999853 67999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhhHHHH---HHHHHHHHH
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRRIY 158 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~i~ 158 (401)
+|++++.+|++++.|+++||+|++|+|+|||+|.+ .++||+|+|||+|.|+|. ++++++++++ +++++.++|
T Consensus 253 ~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~-f~~pe~s~~~~~e~l~~~~~il 331 (455)
T 2dq0_A 253 AEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFV-YSRPEESWEWHEKIIRNAEELF 331 (455)
T ss_dssp THHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEE-EECTTTHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEE-ecCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999974 357999999999999998 6666777665 999999999
Q ss_pred HHhCcccEEecCCCCc-------------------ccc----------c-------------------h-----------
Q 015762 159 EEFLAVPVIKGKKSEL-------------------ENS----------K-------------------F----------- 179 (401)
Q Consensus 159 ~~l~~ipv~~g~k~~~-------------------e~f----------n-------------------F----------- 179 (401)
+.|+ +|+.....+.. .+| + |
T Consensus 332 ~~LG-L~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~c~DfqarR~~iry~~~~~g~~~~vHtlngs~lav 410 (455)
T 2dq0_A 332 QELE-IPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIAT 410 (455)
T ss_dssp HHTT-CCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEH
T ss_pred HHcC-CceEEEECCCccccChhhceeeeeeecCcCCcccEEEeeccchhhHhhccCcEEecCCCCcEEEEEEEechHhHH
Confidence 9985 88632111100 011 0 1
Q ss_pred -HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015762 180 -VQIGVMVMVHGDDKG-LMLPPKVASVQ 205 (401)
Q Consensus 180 -Rli~~li~~~~dd~G-l~lP~~iap~q 205 (401)
|+|++|+++|++++| +.||++++|+|
T Consensus 411 ~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 411 SRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp HHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred HHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 999999999999999 89999999999
No 29
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=2.4e-34 Score=295.38 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=170.9
Q ss_pred CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccc-cceEEEecCCCCCCCcEEEcCC
Q 015762 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAP-EVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~-e~y~~~~~g~~~l~~~l~LRPt 85 (401)
.+|++.|+|.|++++++|++++++.+.++||++|.||.|.+.++|. ++||++.|.+ +||++++.++ ++++|+||
T Consensus 208 G~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~-~sG~~~~f~e~emf~v~~~~~----~~l~L~PT 282 (501)
T 1wle_A 208 GHRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFE-GCGMTPNAKPSQIYNIDPSRF----EDLNLAGT 282 (501)
T ss_dssp CTTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHH-HHTCCSSSSSCSSCBBCTTTS----SSCEECSS
T ss_pred cCceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHH-hhcCCCccCccccEEEecCCC----CeEEECCc
Confidence 4899999999999999999999999999999999999999999995 7999999998 9999987653 78999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC---CCCCcccchhheeccceeecCCh-hhHHHH---HHHHHHHHH
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS---NPTPFIRSREFLWQEGHTAFATK-SEADDE---ILELYRRIY 158 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~---~~~gllR~REF~q~e~~~~~~~~-~~a~~e---il~~~~~i~ 158 (401)
+|++++.+|++++.||++||++++|+++|||+|.+ +++||+|+|||.|.|+|+++.+. ++++++ |+++|.+||
T Consensus 283 aE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il 362 (501)
T 1wle_A 283 AEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEIL 362 (501)
T ss_dssp HHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 58899999999999999977665 677666 999999999
Q ss_pred HHhCcccEEe-----cCC--CCccc------------c----------ch------------------------------
Q 015762 159 EEFLAVPVIK-----GKK--SELEN------------S----------KF------------------------------ 179 (401)
Q Consensus 159 ~~l~~ipv~~-----g~k--~~~e~------------f----------nF------------------------------ 179 (401)
+.|+ +|+.. |.. +...+ | +|
T Consensus 363 ~~Lg-Lpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~sn~~DfqarR~~iry~~~~gk~~~vHtlngSglav~ 441 (501)
T 1wle_A 363 TELG-LHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVP 441 (501)
T ss_dssp HHTT-CCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHH
T ss_pred HHCC-CcEEEEEccCcccCCchhheecHhhcccccccceeEEeccccccchhhhcCcEEECCCCCEEEEEEECCccchHH
Confidence 9885 88642 111 01111 1 11
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce-EEEE
Q 015762 180 VQIGVMVMVHGDDKG-LMLPPKVASVQ-VIVI 209 (401)
Q Consensus 180 Rli~~li~~~~dd~G-l~lP~~iap~q-V~Ii 209 (401)
|+|++|+|+|++++| ++||++++|++ .-+|
T Consensus 442 R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 442 RLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred HHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 999999999999999 99999999998 3344
No 30
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=1.4e-34 Score=292.73 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=167.1
Q ss_pred CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCC
Q 015762 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (401)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~ 86 (401)
.+|+++|+|.|+.+|++|++++++.+.++||++|.||+|++.++|. .+||+++|.++||++++ ++++||||+
T Consensus 155 g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~-~sG~~~~f~~emy~~~d-------~~l~L~Pt~ 226 (421)
T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTA 226 (421)
T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHTCTTTTGGGSCBBTT-------SSEEECSST
T ss_pred CCCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHH-hcCCCCcCchhcEEEcC-------CeEEEeecC
Confidence 5899999999999999999999999999999999999999999996 68999999999999863 679999999
Q ss_pred ChhHHHHHHHhHhcCCCCCeEEEeeecceecCC----CCCCCcccchhheeccceeecCC-hhhHHHH---HHHHHHHHH
Q 015762 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFAT-KSEADDE---ILELYRRIY 158 (401)
Q Consensus 87 e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~-~~~a~~e---il~~~~~i~ 158 (401)
|++++.+++.++.|+++||+|++|+|+|||+|. +|++||+|+|||+|.|+|+++.. .++++++ +++++.++|
T Consensus 227 e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il 306 (421)
T 1ses_A 227 EVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEIL 306 (421)
T ss_dssp HHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 88999999999999999996655 3777764 999999999
Q ss_pred HHhCcccEEe-----c---CCCC-------c----ccc----------ch------------------------------
Q 015762 159 EEFLAVPVIK-----G---KKSE-------L----ENS----------KF------------------------------ 179 (401)
Q Consensus 159 ~~l~~ipv~~-----g---~k~~-------~----e~f----------nF------------------------------ 179 (401)
+.|+ +|+.. | .... | ..| +|
T Consensus 307 ~~LG-L~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~ 385 (421)
T 1ses_A 307 RLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATP 385 (421)
T ss_dssp HHTT-CCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEET
T ss_pred HHCC-CceEEEEecCccCCchhhhcccHhheechhccchheeeccccchhhhhhhcCEeECCCCCEEEEEecCCccchHH
Confidence 9986 88621 1 1100 0 001 11
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCce
Q 015762 180 VQIGVMVMVHGDDKG-LMLPPKVASVQ 205 (401)
Q Consensus 180 Rli~~li~~~~dd~G-l~lP~~iap~q 205 (401)
|+|++|+++|++++| ++||++++|+.
T Consensus 386 R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 386 RILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred HHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 999999999999999 99999999986
No 31
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=8.6e-34 Score=288.70 Aligned_cols=200 Identities=14% Similarity=0.161 Sum_probs=172.7
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
..+|++.|+|.|+++++.|++++++.+.+.||++|.||.|.+.++|. .+||+++|.++||++++.+ ++++|+||
T Consensus 173 sGsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~-~sG~l~~f~eemf~v~~~~-----~~~~LipT 246 (485)
T 3qne_A 173 VGHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMA-KTAQLSQFDEELYKVIDGE-----DEKYLIAT 246 (485)
T ss_dssp HCTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHH-HHSCHHHHTTTCCEEEETT-----EEEEECSS
T ss_pred ccceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHh-hcCCccccccceEEEeCCC-----CeEEEecc
Confidence 35799999999999999999999999999999999999999999995 7999999999999998752 68999999
Q ss_pred CChhHHHHHHHhHhc--CCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhhHHHH---HHHHHHH
Q 015762 86 SETVMYPYFSKWIRG--HRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSEADDE---ILELYRR 156 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s--~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~a~~e---il~~~~~ 156 (401)
+|.+++.++++++.+ |++||+|++||++|||+|.+ .++||+|+|||+|.|+|++ +++++++++ |+++|.+
T Consensus 247 aE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f-~~pe~s~~e~e~ml~~~e~ 325 (485)
T 3qne_A 247 SEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVL-TEPEKSWEEFDRMIGCSEE 325 (485)
T ss_dssp THHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEE-ECGGGHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEE-eCHHHHHHHHHHHHHHHHH
Confidence 999999999998877 99999999999999999974 3689999999999999995 577788766 9999999
Q ss_pred HHHHhCcccEEecCCCC-------cccc-------------------------------------------ch-------
Q 015762 157 IYEEFLAVPVIKGKKSE-------LENS-------------------------------------------KF------- 179 (401)
Q Consensus 157 i~~~l~~ipv~~g~k~~-------~e~f-------------------------------------------nF------- 179 (401)
||+.|+ +|+.....+. ..+| .|
T Consensus 326 il~~Lg-Lpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~Snc~dyqArr~~iry~~~~~~~~~~~~vhtlNgt 404 (485)
T 3qne_A 326 FYQSLG-LPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNST 404 (485)
T ss_dssp HHHHTT-CCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHTTCEECC------CCCBCEEEEEE
T ss_pred HHHHCC-CcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEecCCcCccccccceEEecccccCCCceeeEEEecc
Confidence 999985 8863211110 0001 02
Q ss_pred -----HHHHHHHHHcCCCCCCCCCCCCCCceE---EEEEcCC
Q 015762 180 -----VQIGVMVMVHGDDKGLMLPPKVASVQV---IVIPVPY 213 (401)
Q Consensus 180 -----Rli~~li~~~~dd~Gl~lP~~iap~qV---~Iipi~~ 213 (401)
|+|++|+|+|++++|+++|+.++|+.. .+||+..
T Consensus 405 ~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~~ 446 (485)
T 3qne_A 405 LSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIK 446 (485)
T ss_dssp EEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECCC
T ss_pred hhHHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeeccc
Confidence 999999999999999999999999874 6778764
No 32
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.98 E-value=1.2e-32 Score=280.61 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=171.9
Q ss_pred CCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCC
Q 015762 6 DISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPT 85 (401)
Q Consensus 6 ~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt 85 (401)
+.+|++.|+|.|+++++.|++++++.+.++||++|.||.|.+.++|. .+|||++|.++||++++.+ ++++|+||
T Consensus 196 sGsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~-~sG~~~~f~e~mf~v~~~~-----~~~~L~PT 269 (484)
T 3lss_A 196 AGGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMG-EVAQLSQFDEELYQVSGDG-----DKKYLIAT 269 (484)
T ss_dssp HCTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHH-HHSCHHHHHHTCCEEESSS-----SCEEECSS
T ss_pred CCceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHH-hcCCcccccccceEeecCC-----cceEEecc
Confidence 46889999999999999999999999999999999999999999995 7999999999999998753 78999999
Q ss_pred CChhHHHHHHHhHhcCCCCCeEEEeeecceecCCC----CCCCcccchhheeccceeecCChhh--HHHH---HHHHHHH
Q 015762 86 SETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFS----NPTPFIRSREFLWQEGHTAFATKSE--ADDE---ILELYRR 156 (401)
Q Consensus 86 ~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~----~~~gllR~REF~q~e~~~~~~~~~~--a~~e---il~~~~~ 156 (401)
+|++++.+|++++.||++||+|++++++|||+|.. .++||+|+|||+|.|+|++ +++++ ++++ ++++|.+
T Consensus 270 aE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f-~~pe~~~s~~e~e~~~~~~e~ 348 (484)
T 3lss_A 270 SEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVV-CSPRQEESWRHLEDMITTSEE 348 (484)
T ss_dssp THHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEE-ECSSTTHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEE-eCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999973 4589999999999999994 45555 6665 9999999
Q ss_pred HHHHhCcccEEe-----cCCC--Ccccc----------------------------------------------ch----
Q 015762 157 IYEEFLAVPVIK-----GKKS--ELENS----------------------------------------------KF---- 179 (401)
Q Consensus 157 i~~~l~~ipv~~-----g~k~--~~e~f----------------------------------------------nF---- 179 (401)
||+.|+ +|+.. |... ...+| .|
T Consensus 349 il~~LG-Lpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~Snc~dyqArr~~iry~~~~~~~~~~~~~~~vhtl 427 (484)
T 3lss_A 349 FNKSLG-LPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHML 427 (484)
T ss_dssp HHHHHT-CCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEESSCCC----CCSCEECEEE
T ss_pred HHHHcC-CcEEEEEcCCcccCCchhheechheecCCCCCeeEEEEecCcccccccccceEEeccccccccCCCceeeeEE
Confidence 999986 88621 1100 00000 12
Q ss_pred --------HHHHHHHHHcCCCCCCCCCCCCCCce--EEEEEcCC
Q 015762 180 --------VQIGVMVMVHGDDKGLMLPPKVASVQ--VIVIPVPY 213 (401)
Q Consensus 180 --------Rli~~li~~~~dd~Gl~lP~~iap~q--V~Iipi~~ 213 (401)
|+|++|+++|++++|+++|+.++|+. .-+||...
T Consensus 428 Ngt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~ 471 (484)
T 3lss_A 428 NGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFEN 471 (484)
T ss_dssp EEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCC
T ss_pred eccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCc
Confidence 99999999999999999999999987 66777653
No 33
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.97 E-value=3.2e-32 Score=282.17 Aligned_cols=189 Identities=15% Similarity=0.183 Sum_probs=165.5
Q ss_pred CCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCC
Q 015762 7 ISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (401)
Q Consensus 7 ~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~ 86 (401)
.+|++.|+|.|.++++.|++++++.+.+.||++|.||.|.+.++|. .+||++.|.++||++++ ++++|+||+
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~-~sG~~~~f~e~mf~~~~-------~~~~L~PT~ 335 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFL-GTGHFPAYRDQVWAIAE-------TDLYLTGTA 335 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHH-HHTCTTTTGGGCCEETT-------TTEEECSST
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHH-hcCCcccChhhceEecC-------CCEEEccCC
Confidence 6899999999999999999999999999999999999999999995 79999999999999864 579999999
Q ss_pred ChhHHHHHHHhHhcCCCCCeEEEeeecceecCC----CCCCCcccchhheeccceeecCCh-hhHHHH---HHHHHHHHH
Q 015762 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEF----SNPTPFIRSREFLWQEGHTAFATK-SEADDE---ILELYRRIY 158 (401)
Q Consensus 87 e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~----~~~~gllR~REF~q~e~~~~~~~~-~~a~~e---il~~~~~i~ 158 (401)
|++++.++++++.||++||+|++|+++|||+|. ++++||+|+|||+|.|+|++.... ++++++ ++++|.+||
T Consensus 336 E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~ 415 (536)
T 3err_A 336 EVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEIL 415 (536)
T ss_dssp HHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997 468899999999999999965544 377766 999999999
Q ss_pred HHhCcccEEe-----cCC--CCcccc----------------------c------------------h------------
Q 015762 159 EEFLAVPVIK-----GKK--SELENS----------------------K------------------F------------ 179 (401)
Q Consensus 159 ~~l~~ipv~~-----g~k--~~~e~f----------------------n------------------F------------ 179 (401)
+.|+ +|+.. |.. +...+| + |
T Consensus 416 ~~Lg-Lpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~ 494 (536)
T 3err_A 416 RLLE-LPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTALATP 494 (536)
T ss_dssp HHTT-CCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEET
T ss_pred HHcC-CcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEecCccChhhcccCeEEECCCCCeEeeeEEeccchhHH
Confidence 9886 88632 211 011111 0 1
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCCCCc
Q 015762 180 VQIGVMVMVHGDDKG-LMLPPKVASV 204 (401)
Q Consensus 180 Rli~~li~~~~dd~G-l~lP~~iap~ 204 (401)
|+|++|+++|++++| +++|+.++|+
T Consensus 495 R~l~ailen~q~~dg~i~iP~~L~py 520 (536)
T 3err_A 495 RILAMLLENHQLQDGRVRVPQALIPY 520 (536)
T ss_dssp HHHHHHHHHHBCTTSCEECCGGGHHH
T ss_pred HHHHHHHHhcCCCCCcEeCChhhCCc
Confidence 999999999999999 9999999997
No 34
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.97 E-value=1.2e-31 Score=276.41 Aligned_cols=162 Identities=18% Similarity=0.182 Sum_probs=138.7
Q ss_pred CcccCCCccEEecchHHHHHHHHHHHHHHH-HHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecC--C-----
Q 015762 2 IEYYDISGCYIMRPWAISIWETMQKFFDAE-IKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSG--E----- 73 (401)
Q Consensus 2 ~~~~~~~G~~~~~P~g~~i~~~i~~~~~~~-~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g--~----- 73 (401)
+.+.+++|+++|+|.|+++|++|++++++. +.++||++|.||+|++.++|. .+||+++|.++||+++..+ +
T Consensus 215 i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~-~SGh~~~F~demy~v~~~~~Rd~~~~e 293 (522)
T 2cja_A 215 LKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWM-KSGHAKGVYPEIYYVCPPQTRDPDYWE 293 (522)
T ss_dssp EEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHH-HHTGGGTCGGGCCEEECBSCCCHHHHH
T ss_pred eeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHh-hcCCcCccccceeeeecCCccchhhhh
Confidence 445689999999999999999999999974 899999999999999999996 5899999999999997321 1
Q ss_pred ------------------C-CCCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEe-eecceecCCCCCCCcccchhhee
Q 015762 74 ------------------S-DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQ-WCNVVRWEFSNPTPFIRSREFLW 133 (401)
Q Consensus 74 ------------------~-~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q-~~~vfR~E~~~~~gllR~REF~q 133 (401)
+ .-+++++||||+|++++.+|++++.|+++||++++| +|+|||||.++++|++|+|||+|
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q 373 (522)
T 2cja_A 294 EVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHR 373 (522)
T ss_dssp HHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEE
T ss_pred hhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEE
Confidence 0 014789999999999999999999999999999999 99999999433489999999999
Q ss_pred ccceeecCChhhHHHH---HH-HHHHHHHHHhCcccE
Q 015762 134 QEGHTAFATKSEADDE---IL-ELYRRIYEEFLAVPV 166 (401)
Q Consensus 134 ~e~~~~~~~~~~a~~e---il-~~~~~i~~~l~~ipv 166 (401)
.|+|++ +++++++++ ++ .....+++.|+ +|.
T Consensus 374 ~E~~~F-~~pe~s~ee~ee~i~~~~~~~l~~LG-Lp~ 408 (522)
T 2cja_A 374 IEIVWI-GTKEEVLKCAEELHDRYMHIFNDILD-IEW 408 (522)
T ss_dssp EEEEEE-EEHHHHHHHHHHHHHHHHHHHHHTSC-CCE
T ss_pred eeEEEE-eChHHHHHHHHHHHHHHHHHHHHHcC-CCE
Confidence 999994 577888765 67 55566667764 884
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.97 E-value=4.3e-30 Score=258.84 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=134.6
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEc
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIR 83 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LR 83 (401)
+..++|++||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.+. + +.+.++||+|.|+++ +.++||
T Consensus 10 ~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g--~~~~~~my~f~D~~g----~~l~LR 82 (400)
T 3od1_A 10 FEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-S--AILDQQLFKLLDQQG----NTLVLR 82 (400)
T ss_dssp TCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-S--SSCGGGSCEEECTTS----CEEEEC
T ss_pred ccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-C--CccccceEEEECCCC----CEEEEC
Confidence 578999999999999999999999999999999999999999999999754 4 457899999999875 899999
Q ss_pred CCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 84 PTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 84 Pt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
|+.|+++++++++... ++++|+|+||+|+|||+| +|+.| |+|||+|.++|++|.+...+|+|++.++.++++.++
T Consensus 83 pd~T~~~aR~~~~~~~-~~~~P~r~~y~g~vfR~e-~~~~g--R~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lg 157 (400)
T 3od1_A 83 PDMTAPIARLVASSLK-DRAYPLRLAYQSNVYRAQ-QNEGG--KPAEFEQLGVELIGDGTASADGEVIALMIAALKRAG 157 (400)
T ss_dssp SCSHHHHHHHHHHHCS-SSCSCEEEEEEEEEECCC-C---C--CCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhhcc-cCCCCeEEEEEcCEEeCC-CCCCC--CCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCC
Confidence 9999999999887653 578999999999999999 78889 999999999999999999999999999999999886
No 36
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.96 E-value=7.2e-29 Score=245.38 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=133.6
Q ss_pred cccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhh-hccCcccccccceEEEecCCCCCCCcEE
Q 015762 3 EYYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQK-EKDHIEGFAPEVAWVTKSGESDLEVPIA 81 (401)
Q Consensus 3 ~~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k-~~gh~~~f~~e~y~~~~~g~~~l~~~l~ 81 (401)
.+..++|++||+|.++.+|++|++.+++.|+++||++|.||+|++.++|.+ .+||++.+.++||.|.|+++ +.++
T Consensus 21 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g----~~l~ 96 (344)
T 1z7m_A 21 NYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEG----QSIT 96 (344)
T ss_dssp -CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTC----CEEE
T ss_pred cCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCC----CEEe
Confidence 467899999999999999999999999999999999999999999999965 23888889999999999875 8999
Q ss_pred EcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 82 IRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 82 LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
|||+.|++++++++.. ++++|+|+||+|+|||+| +|+.| |+|||+|.|+|+++.+...+|+|++.++.++|+.+
T Consensus 97 LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e-~p~~g--R~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~l 170 (344)
T 1z7m_A 97 LRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKE-KRHKG--RSTENYQIGIELFGESADKSELEILSLALQVIEQL 170 (344)
T ss_dssp ECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCC-C---------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccC-CCCCC--CcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHC
Confidence 9999999999988765 668999999999999999 88889 99999999999999999999999999999999998
Q ss_pred Cccc
Q 015762 162 LAVP 165 (401)
Q Consensus 162 ~~ip 165 (401)
+ ++
T Consensus 171 g-l~ 173 (344)
T 1z7m_A 171 G-LN 173 (344)
T ss_dssp T-CS
T ss_pred C-CC
Confidence 6 54
No 37
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.94 E-value=3.4e-27 Score=235.67 Aligned_cols=148 Identities=11% Similarity=0.017 Sum_probs=131.8
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCccccc-ccceEEEecCCCCCCCcEEE
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFA-PEVAWVTKSGESDLEVPIAI 82 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~-~e~y~~~~~g~~~l~~~l~L 82 (401)
+..++|++||+|.++.+|+.|++.+++.|+++||++|.||+|++.++|.+ ++ +.+. ++||.|.|+++ +.++|
T Consensus 23 ~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~-~g--~~~~~~~my~~~D~~g----~~l~L 95 (373)
T 3rac_A 23 ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLR-AR--SPESSRDWIRLFDGGG----DAVAL 95 (373)
T ss_dssp CCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHT-TS--CTTSCCCCCBCCCCSS----SCEEE
T ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhh-cC--CccchhceEEEECCCC----CEEEE
Confidence 47799999999999999999999999999999999999999999999975 44 3567 89999999875 89999
Q ss_pred cCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC------CCCcccchhheeccceeecCC-hhhHHHHHHHHHH
Q 015762 83 RPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN------PTPFIRSREFLWQEGHTAFAT-KSEADDEILELYR 155 (401)
Q Consensus 83 RPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~------~~gllR~REF~q~e~~~~~~~-~~~a~~eil~~~~ 155 (401)
||+.|+++++++++...+ +++|+|+||+|+|||+| +| +.| |+|||+|.|+|+++.+ ...+|+|++.++.
T Consensus 96 Rpd~T~~~aR~~~~~~~~-~~~P~r~~y~g~vfR~e-~~g~~~~~~~g--R~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~ 171 (373)
T 3rac_A 96 RPEMTPSIARMAAPRVAA-GRTPIRWCYCERVYRRT-DDPASLSWASG--KAAESTQVGIERIGEEASVDVDMDVLRLLH 171 (373)
T ss_dssp CSSSHHHHHHHHHHHHHT-TCCCCEEEEEEEEEECC---------------CEEEEEEEEEECSSCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcccc-CCCCeEEEEEcceEccC-CCcccccccCC--ccceeEEeeeEEECCCCCHHHHHHHHHHHH
Confidence 999999999999987765 68999999999999999 66 678 9999999999999998 8899999999999
Q ss_pred HHHHHhC
Q 015762 156 RIYEEFL 162 (401)
Q Consensus 156 ~i~~~l~ 162 (401)
++|+.++
T Consensus 172 ~~l~~lg 178 (373)
T 3rac_A 172 EASAAAG 178 (373)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9999986
No 38
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.87 E-value=3.2e-22 Score=194.53 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=134.9
Q ss_pred ccCCCccEEecchHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEec-CC---------
Q 015762 4 YYDISGCYIMRPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKS-GE--------- 73 (401)
Q Consensus 4 ~~~~~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~-g~--------- 73 (401)
+..++|++.+.+.+..|++.|++++++ ....||+++.||.|.+.++|+ ++||+++|.++||.+..- ++
T Consensus 50 ~~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e-~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~ 127 (346)
T 3mf2_A 50 SMGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLE-KSGYLKSFPNLLGCVCGLHGTEREINAAVS 127 (346)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHH-HTTHHHHCGGGCEEEEEECSCHHHHHHHHH
T ss_pred ccCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHH-hcCCcccChhhcceeecccccchhhhhhhh
Confidence 456899999999999999999999999 888999999999999999996 799999999999998541 11
Q ss_pred ---------CC-CCCcEEEcCCCChhHHHHHHHh-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCC
Q 015762 74 ---------SD-LEVPIAIRPTSETVMYPYFSKW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFAT 142 (401)
Q Consensus 74 ---------~~-l~~~l~LRPt~e~~i~~~~~~~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~ 142 (401)
.. .+.+++|.||+|++++.+|++. +.+ +.|+|+..+|+|||+|. ..|++|+|||.|.|+|+ +++
T Consensus 128 ~~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~plr~~~~g~CFR~Ea--S~GL~RvhqF~kvE~v~-~~t 202 (346)
T 3mf2_A 128 RFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGGLRFDVAADCFRREP--SKHLDRLQSFRMREYVC-IGT 202 (346)
T ss_dssp HHHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTCEEEEEEEEEECCCC--CSSTTSCSEEEEEEEEE-EES
T ss_pred hhccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccCeEEEEECCccCCcC--CCCCeeeeeeEEEEEEE-EeC
Confidence 00 1257999999999999999975 555 45999999999999996 47999999999999999 568
Q ss_pred hhhHHHH---HHHHHHHHHHHhCcccE
Q 015762 143 KSEADDE---ILELYRRIYEEFLAVPV 166 (401)
Q Consensus 143 ~~~a~~e---il~~~~~i~~~l~~ipv 166 (401)
++++.++ +++.+.++++.|+ +|+
T Consensus 203 pEqs~~e~e~l~~~ae~il~~Lg-Lpy 228 (346)
T 3mf2_A 203 PDDVSDFRERWMVRAQAIARDLG-LTF 228 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CCE
Confidence 8888777 8999999999886 885
No 39
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.77 E-value=2.7e-19 Score=171.59 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=99.2
Q ss_pred HHHHHHHH--HHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhHh
Q 015762 22 ETMQKFFD--AEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (401)
Q Consensus 22 ~~i~~~~~--~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (401)
+.|+++++ +.++++||++|.||+|++.++|.+ + .|.|+++ +.++|||+.|++++ ++...
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~----------d--~f~d~~g----~~l~LRpd~T~~~a---~~~~~ 64 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG----------N--FFLDRKG----NLFSIREDFTKTVL---NHRKR 64 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS----------S--CEEETTS----CEEEECCCHHHHHH---HHHTT
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc----------c--ccCCCCC----CEEEeCCcChHHHH---HHHhh
Confidence 34677777 999999999999999999999953 1 3457764 89999999999988 44333
Q ss_pred cCCC-CCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 100 GHRD-LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 100 s~~~-LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
+++ +|+|+|++|+|||+| +|+. |||+|.++|+++.+...+|+|++.+..++++.++
T Consensus 65 -~~~~~p~R~~y~g~vfR~e-~~~~-----Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lg 121 (275)
T 1usy_A 65 -YSPDSQIKVWYADFVYRYS-GSDL-----VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFF 121 (275)
T ss_dssp -CTTCCCEEEECCEEEEEEE-TTEE-----EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHC
T ss_pred -cCCCCceEEEEeceEEecC-CCCC-----CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcC
Confidence 667 999999999999999 5544 9999999999999999999999999999999986
No 40
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.73 E-value=1.2e-17 Score=140.99 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=93.2
Q ss_pred CCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCC--CCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEE
Q 015762 201 VASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR--DNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVR 278 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~--~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~ 278 (401)
--|.||.|+|+. ++..+||.+|+++|+++|+||++|.+ +. ++|+|++.|++.+|||.|+||++|+++|+|+
T Consensus 6 ~~P~Qv~IlpVs------~~~~~YA~~V~~~L~~~GiRvevD~~r~~e-~Lg~kIR~a~~~kvPy~lVVG~kE~e~~sVs 78 (130)
T 1v95_A 6 SGPVDCSVIVVN------KQTKDYAESVGRKVRDLGMVVDLIFLNTEV-SLSQALEDVSRGGSPFAIVITQQHQIHRSCT 78 (130)
T ss_dssp CCCCTEEEEESS------SGGGHHHHHHHHHHHTTTCCEEEEECTTSS-CHHHHHHHHHHHTCSEEEEECHHHHHHTEEE
T ss_pred CCCCeEEEEEeC------cchHHHHHHHHHHHHHCCCEEEEecCCCCC-cHHHHHHHHHHcCCCEEEEEechHHhcCeeE
Confidence 368999999998 56889999999999999999999996 64 9999999999999999999999999999999
Q ss_pred EEECCC--CceeeechhhHHHHHHHHHHHHHHH
Q 015762 279 AVRRDN--GAKIDLPRGSLVERVKELLEEVQES 309 (401)
Q Consensus 279 v~~r~t--g~k~~v~~~el~~~i~~~l~~~~~~ 309 (401)
|+.|.. ++...+|++++++.+...+..+...
T Consensus 79 VR~r~~~~~e~~~m~lde~i~~l~~~~~~~~~~ 111 (130)
T 1v95_A 79 VNIMFGTPQEHRNMPQADAMVLVARNYERYKNE 111 (130)
T ss_dssp EEECSSSCCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCccCccCHHHHHHHHHHHHHHHhhh
Confidence 999987 7888999999999998877776654
No 41
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.66 E-value=2e-16 Score=152.41 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhH
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (401)
..++.+++.+++.+..+||++|.||.|++.++|. .+||++. .+||.+.+.. +++++|||+.++.+..+++..+
T Consensus 71 h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~-~~g~~~~--~~m~~~~npl----~e~~~LRp~l~p~l~~~~r~~~ 143 (288)
T 3dsq_A 71 PALLELEEKLAKALHQQGFVQVVTPTIITKSALA-KMTIGED--HPLFSQVFWL----DGKKCLRPMLAPNLYTLWRELE 143 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHH-TTSSCC----CCTTTSCEE----ETTEEECSCSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHh-hcCCCcc--cccEEeeccc----ccchhhhhcChHHHHHHHHHHH
Confidence 3478999999999999999999999999999996 5677652 1444332211 2568999999999988888776
Q ss_pred hcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 99 ~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
.+ +++|+|+|++|+|||+| .++.+ |+|||+|.|+++++........++..++..+++.+|
T Consensus 144 ~~-~~~PlrlfeiG~vFR~E-~~~~~--r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LG 203 (288)
T 3dsq_A 144 RL-WDKPIRIFEIGTCYRKE-SQGAQ--HLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAG 203 (288)
T ss_dssp TT-SCSCEEEEEEEEEECSC-CSSSC--CCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHT
T ss_pred hC-CCCCEEEEEEeeEEecC-CCCCC--cCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcC
Confidence 65 78999999999999999 44455 999999999999987766677789999999999986
No 42
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.38 E-value=2.5e-12 Score=123.97 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc--cccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHHhH
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE--GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~--~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (401)
++.+.+.+++.|...||++|.||+|++.+.+.+ .+... .+.+++|.+. +..+|||+.++.+...++..+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~-~~~~~~~p~~~~~~~~~--------~~~~LR~slsp~L~~~l~~n~ 149 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER-MGIDNDTELSKQIFRVD--------KNFCLRPMLTPNLYNYLRKLD 149 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH-TTCCTTSSGGGGCCEET--------TTEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh-cCCCcCCchhhhheeeC--------CCeeEcccChHHHHHHHHHhh
Confidence 688999999999999999999999999998853 43222 2556788771 579999999999888777654
Q ss_pred hcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhCcccE
Q 015762 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFLAVPV 166 (401)
Q Consensus 99 ~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~~ipv 166 (401)
. +...|+|+|++|+|||+| .++.+ |.+||+|.|++.+|.+. ...++..++..+++.++ +++
T Consensus 150 ~-~~~~p~rlfeiG~vFR~E-~~~~~--~~~Ef~ql~~~~~g~~~--~f~elkg~le~ll~~lG-l~~ 210 (290)
T 3qtc_A 150 R-ALPDPIKIFEIGPCYRKE-SDGKE--HLEEFTMLVFWQMGSGC--TRENLESIITDFLNHLG-IDF 210 (290)
T ss_dssp T-TSCSSEEEEEEEEEECCC-SCSSS--CCSEEEEEEEEEESTTC--CHHHHHHHHHHHHHHHT-CCC
T ss_pred c-cCCCCeEEEEEcCEEecC-CCCCc--CcchheEEEEEEEcCCh--HHHHHHHHHHHHHHHcC-CCc
Confidence 3 357999999999999999 55566 99999999999998763 35568888899998885 554
No 43
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.22 E-value=4.8e-11 Score=115.16 Aligned_cols=124 Identities=18% Similarity=0.063 Sum_probs=91.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHcCCeEeccCCccCh-hhhhhh-ccCcccccccceEEEecCCCCCCCcEEEcCCCChhHH
Q 015762 14 RPWAISIWETMQKFFDAEIKKMKIQNCYFPLFVSP-TVLQKE-KDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMY 91 (401)
Q Consensus 14 ~P~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~-~l~~k~-~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~ 91 (401)
...-+++|..|.+.+++.|.++||.+|.||+|++. +++.+. .+ ++ .++|.+...| +.++||...+.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~--e~--a~~f~~~~~~-----~~~~L~~Spe~--- 78 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG--EG--MEPAEVEIYG-----VKMRLTHSMIL--- 78 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC--CC--CCCCEEEETT-----EEEEECSCSHH---
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCC--Cc--ceeEEEEcCC-----CCEEeccChHH---
Confidence 34578999999999999999999999999999998 877654 33 33 5678775433 67899754332
Q ss_pred HHHHHhHhcCCCCCeEEEeeecceecCCCCCC--Ccccch-hheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 92 PYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPT--PFIRSR-EFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 92 ~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~--gllR~R-EF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
+....+.+ -|.|+||+|+|||+| +||. + |.+ ||+|.|++.++.+.. +++++..++++.
T Consensus 79 -~~~~l~~~---g~~rvf~ig~~FR~E-~pq~~~~--RH~~EFtqle~e~~~~~~~----~l~~~~e~l~~~ 139 (294)
T 1nnh_A 79 -HKQLAIAM---GLKKIFVLSPNIRLE-SRQKDDG--RHAYEFTQLDFEVERAKME----DIMRLIERLVYG 139 (294)
T ss_dssp -HHHHHHHT---TCCEEEEEEEEECCC-CGGGCSS--SCCSEEEEEEEEEETCCHH----HHHHHHHHHHHH
T ss_pred -HHHHHhhc---CccceEEEEccEeCC-CCCCCCC--ccccceeEEEEEecCCCHH----HHHHHHHHHHHH
Confidence 12222222 278999999999999 6664 7 888 999999999998743 444444444443
No 44
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.93 E-value=6.5e-09 Score=105.32 Aligned_cols=119 Identities=14% Similarity=-0.032 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+++.|..+||.+|.||+|++. .++ =+.++|.+...| +.++|| +|-... .
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~------~~e---~~~~~f~~~~~~-----~~~~Lr-~Spel~----~ 193 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG------AVE---GGATLFKLKYFD-----KYAYLS-QSAQLY----L 193 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC------CSS---CGGGCCEEEETT-----EEEEEC-SCSHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee------cCC---CCceeEEEeecC-----CcEEec-cChHHH----H
Confidence 456889999999999999999999999999965 221 134788875433 789999 332221 2
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccch-hheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
..+.+ -|.|+||+|+|||+| .++.+ |.+ ||+|.|++.++++..+....+-+++..++.
T Consensus 194 ~~~~~---g~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~ 252 (434)
T 1x54_A 194 EAAIF---GLEKVWSLTPSFRAE-KSRTR--RHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQ 252 (434)
T ss_dssp HHHHH---HHSEEEEEEEEECCC-CCCCS--SCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---CccceEEEecceecC-CCCCc--ccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 21222 278999999999999 55667 888 999999999999854444333333444433
No 45
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.93 E-value=6.1e-09 Score=105.35 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+++.|...||.+|.||+|++. .++ =+.++|.+...| +.++||-..+... +
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~------~~e---~~~~~f~~~~~~-----~~~~L~~Spql~~----~ 193 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIAS------ATE---GGAQLFPVIYFG-----KEAFLAQSPQLYK----E 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS------CSS---TTCCCCEEEETT-----EEEEECSCCHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEee------CCC---CCceeEEEecCC-----ceEEecCCcHHHH----H
Confidence 356789999999999999999999999999975 121 134788875443 7899984333221 2
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccch-hheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
. +.+. +-|+||+|+|||+| .++.+ |.+ ||+|.|++.++++..+..+.+-+++..+++
T Consensus 194 ~-~~~g---~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~ 251 (429)
T 1wyd_A 194 L-MAGV---VERVFEVAPAWRAE-ESDTP--FHLAEFISMDVEMAFADYNDVMQLLEKILHNIVK 251 (429)
T ss_dssp H-HHHH---HSEEEEEEEEECCC-CCCSS--SCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHH
T ss_pred H-HHhC---cCceEEEccccccc-CCccc--cccceeeEeeeeecCCCHHHHHHHHHHHHHHHHH
Confidence 2 2221 67999999999999 55667 888 999999999999855544443334444443
No 46
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=98.88 E-value=9.6e-09 Score=105.51 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-+++|..|.+.+++.|...||.+|.||+|+... ++ + ..++|.+...| +.++||-..+- +.+
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~-----~~---~-ga~~f~~~~~~-----~~~~L~~Spql-----~~k 237 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAP-----SE---G-GSSVFEVTYFK-----GKAYLAQSPQF-----NKQ 237 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----SS---S-SSCCCEEEETT-----EEEEECSCTHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec-----CC---C-CcccceeccCC-----ccEEcccChHH-----HHH
Confidence 568899999999999999999999999999853 11 1 23688887643 78999933332 333
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccch-hheeccceeecC-ChhhHHHHHHHHHHHHHH
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEILELYRRIYE 159 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~-~~~~a~~eil~~~~~i~~ 159 (401)
. +.+ -+-|+||+|+|||+| .++.+ |.+ ||+|.|++..+. +.++..+.+-+++..+++
T Consensus 238 ~l~~~---g~~rvy~ig~~FR~E-~~~~~--Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~ 297 (487)
T 1eov_A 238 QLIVA---DFERVYEIGPVFRAE-NSNTH--RHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFS 297 (487)
T ss_dssp HHHHT---TCCEEEEEEEEECCC-CCCCT--TCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHH
T ss_pred HHHhc---CCCceEEEeccEecC-CCCCC--ccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 2 222 256999999999999 55667 998 999999998654 455544443344444444
No 47
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.82 E-value=9.9e-09 Score=103.61 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-+++|..|.+.+++.|..+||.+|.||+|++.. .+ =+.++|.+... ++.++||-..+.. .
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~-----~e----~~~~~f~~~~~-----g~~~~L~~Spel~-----~ 183 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG-----AE----GGSGLFGVDYF-----EKRAYLAQSPQLY-----K 183 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------------CHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC-----CC----CCceeEEEeeC-----CCcEEeeeCHHHH-----H
Confidence 3568899999999999999999999999999752 11 12367776433 2678998322221 1
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccch-hheeccceeecC-ChhhHHHHHHHHHHHHHH
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFA-TKSEADDEILELYRRIYE 159 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~-~~~~a~~eil~~~~~i~~ 159 (401)
+.+.+ . +-|+||+|+|||+| .++.+ |.+ ||+|.|++.+++ +..+..+.+-+++..+++
T Consensus 184 ~~l~~--g-~~rvf~ig~~FR~E-~~~~~--RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~ 243 (422)
T 1n9w_A 184 QIMVG--V-FERVYEVAPVWRME-EHHTS--RHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLE 243 (422)
T ss_dssp HHHHH--H-HSEEEEEEEC----------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhh--C-CCceeEEeCceECC-CCCCC--cccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 22221 1 36999999999999 65677 898 999999999999 755544443334444443
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.74 E-value=6.3e-08 Score=99.48 Aligned_cols=122 Identities=16% Similarity=0.065 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-+++|..|.+.+++.|...||.+|.||+|.+.. .| =..++|.+.+.. ++.+++||- |.. +|.+
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~G----a~a~~F~~~~~~---~~~~~yLr~-Spq----Lylk 235 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GG----AAARPFITHHNA---LDMTLYMRI-AIE----LHLK 235 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEETT---TTEEEEECS-CSH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CC----CcccceEecccC---CCceeEEec-CHH----HHHH
Confidence 567899999999999999999999999999641 12 134678776432 247899993 332 2333
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
. +.+ -.-|+||+|+|||+|.. ... |..||+|.|++.++++.++..+.+-+++..+++.+
T Consensus 236 ~l~v~---G~~rVyeig~~FR~E~~-~~r--H~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v 295 (493)
T 3a74_A 236 RLIVG---GLEKVYEIGRVFRNEGI-STR--HNPEFTMLELYEAYADFRDIMKLTENLIAHIATEV 295 (493)
T ss_dssp HHHHT---TCCEEEEEEEEECCCCC-BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhc---ccCceEEECccccCCCC-Ccc--cCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 332 24699999999999954 445 99999999999999987666555445555555544
No 49
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.64 E-value=1.9e-07 Score=96.17 Aligned_cols=122 Identities=13% Similarity=0.097 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| =+.++|.+.+.. ++.+++||-..+ +|.+
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~G----a~ar~F~t~~~~---~~~~~yL~~Spq-----Lylk 244 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GG----ASARPFITHHNA---LDLDMYLRIAPE-----LYLK 244 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CS----SCCCCCEEEETT---TTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CC----CcccceEeccCC---CCceEEeccCHH-----HHHH
Confidence 467889999999999999999999999998641 12 123567665432 247899994333 2333
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
. +.+- .=|+||+|+|||+|.. ... |..||+|.|++.++++.++..+.+-+++..+++.+
T Consensus 245 ~L~v~G---~~rVyeIg~~FR~E~~-~~r--H~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v 304 (504)
T 1e1o_A 245 RLVVGG---FERVFEINRNFRNEGI-SVR--HNPEFTMMELYMAYADYHDLIELTESLFRTLAQEV 304 (504)
T ss_dssp HHHHHT---CCEEEEEEEEECCCCC-CC---CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcC---CCcEEEEcccccCCCC-Ccc--ccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 2221 2499999999999954 334 99999999999999987766555455555555544
No 50
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.59 E-value=2.8e-07 Score=90.60 Aligned_cols=122 Identities=13% Similarity=0.043 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCC-CCCCCcEEEcCCCChhHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGE-SDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~-~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
-++++..|.+.+|+.|...||.+|.||+|.+..- + +-..+.|.+...+. ..++.++.|+-..+ ++.
T Consensus 35 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---~-----~a~~~~F~~~~~~~~~~~~~~~yL~~Spq-----l~~ 101 (345)
T 3a5y_A 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATV---T-----DIHLVPFETRFVGPGHSQGMNLWLMTSPE-----YHM 101 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC---C-----CTTCCCCEEEECCSTTSCCEEEEECSCSH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCC---C-----CCccceEEEEecCcccccCCCEeecCCHH-----HHH
Confidence 6789999999999999999999999999986531 1 11234555554331 11235677875544 233
Q ss_pred H-hHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHH
Q 015762 96 K-WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRI 157 (401)
Q Consensus 96 ~-~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i 157 (401)
+ .+.+. + =|+||+|+|||+|.. +.- |..||+|.|.+.++.+.++..+.+-++...+
T Consensus 102 k~l~~~g--~-~rvyqIg~~FR~E~~-~~r--H~pEFt~lE~e~af~d~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 102 KRLLVAG--C-GPVFQLCRSFRNEEM-GRY--HNPEFTMLEWYRPHYDMYRLMNEVDDLLQQV 158 (345)
T ss_dssp HHHHHTT--C-CSEEEEEEEECCCCC-BTT--BCSEEEEEEEEEETCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcC--C-CcEEEEEcceeCCCC-ccc--ccchhheeeeeeeCCCHHHHHHHHHHHHHHH
Confidence 3 23332 2 299999999999955 555 9999999999999998655444433333333
No 51
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.33 E-value=1.8e-06 Score=87.52 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 16 WAISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 16 ~g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
.-++++..|.+.+|+.|...||.+|.||+|..... .|+ .++|.+..- +..++|+-..+ +|.
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG~-----~~~F~~~~~-----g~~~~L~~Spq-----Lyl 190 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EGG-----STLFNLDYF-----GEQSFLTQSSQ-----LYL 190 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SCT-----TSCCEEEET-----TEEEEECSCSH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CCc-----hhceeeccC-----CcccccCCChH-----HHH
Confidence 35688999999999999999999999999976542 122 234555443 36788875433 233
Q ss_pred HhHhcCCCCCeEEEeeecceecCCCCCCCcccch-hheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 96 KWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSR-EFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 96 ~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~R-EF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
+.+.. . -=|+||+|+|||+|.. ... |-. ||+|.|.+.++++.++..+.+-++...+++.
T Consensus 191 q~l~~--g-~~rvfeIg~~FR~E~~-~t~--RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~ 250 (435)
T 2xgt_A 191 ETCIP--T-LGDVFCIAQSYRAEKS-RTR--RHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDR 250 (435)
T ss_dssp HHHHH--H-HCSEEEEEEEECCCSS-CCT--TCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh--c-cCceEEEecceecCCC-Ccc--ccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 32221 1 1389999999999943 333 555 9999999999999777665544444444443
No 52
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.30 E-value=4.6e-06 Score=84.39 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+++.|...||.+|.||+|.+... + |+ -++|.+..-| .+++|+...+ ++.+
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~---e-g~-----~~~f~~~~~~-----~~~yL~~Spq-----l~~q 196 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT---E-GG-----TELFPMKYFE-----EDAFLAQSPQ-----LYKQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS---S-CS-----SSCCEEEETT-----EEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC---C-CC-----ccceeEeeCC-----ccEEEecChH-----HHHH
Confidence 4678899999999999999999999999987541 1 21 2466666543 6789986544 3443
Q ss_pred hHh-cCCCCCeEEEeeecceecCCCCCCCcccc-hhheeccceeecCC-hhhHHHHHHHHHHHHHHH
Q 015762 97 WIR-GHRDLPLKLNQWCNVVRWEFSNPTPFIRS-REFLWQEGHTAFAT-KSEADDEILELYRRIYEE 160 (401)
Q Consensus 97 ~i~-s~~~LPlk~~q~~~vfR~E~~~~~gllR~-REF~q~e~~~~~~~-~~~a~~eil~~~~~i~~~ 160 (401)
.+. +. -=|+||+|+|||+|.. ..+ |- -||+|.|++.++++ .++..+.+-++...+++.
T Consensus 197 ~l~~~g---~~rvf~i~~~FR~E~~-~t~--RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~ 257 (438)
T 3nem_A 197 IMMASG---LDRVYEIAPIFRAEEH-NTT--RHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINY 257 (438)
T ss_dssp HGGGTT---CCEEEEEEEEECCCSS-CCT--TCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC---CCceEEEcceEECCCC-CCc--ccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHH
Confidence 332 22 2499999999999954 223 55 49999999999999 777665544444444443
No 53
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.30 E-value=4.5e-06 Score=86.28 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| =+.+.|.+.+.- ++.+++||-..+ ++.+
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----gG----a~a~~F~t~~~~---~~~~~yL~~Spq-----L~lk 237 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP-----GG----AVAKPFITYHNE---LDMNLYMRIAPE-----LYHK 237 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSCCCCEEEETT---TTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC-----CC----ccccceeeeccc---CCcceEeeCCHH-----HHHH
Confidence 467888999999999999999999999998642 11 123556544321 357899996554 2333
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
. +.+ .+ =|+||+|++||+|...++ +.-||+|.|.+.++++.++..+.+-+++..+++.+
T Consensus 238 ~liv~--g~-~rVyeig~~FR~E~~~tr---H~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 297 (521)
T 3bju_A 238 MLVVG--GI-DRVYEIGRQFRNEGIDLT---HNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHI 297 (521)
T ss_dssp HHHHT--TC-CEEEEEEEEECCSCCBTT---BCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--Cc-CceEEEEcceeCCCCCCc---cchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 2 222 12 289999999999965543 88899999999999997776655445555555544
No 54
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.23 E-value=7.8e-06 Score=84.34 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|.+.. .| =..+.|..... .++.+++||-..+ ++.+
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gG----A~a~pF~t~~n---~~~~~~yL~~Spq-----Lylk 265 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GG----AAAKPFVTHHN---ALDMEMFLRIAPE-----LYLK 265 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CS----SSSCCCEEEET---TTTEEEEECSCSH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CC----Ccccccccccc---cCCcceecccCHH-----HHHH
Confidence 568889999999999999999999999998531 12 11234543332 1357888886544 3333
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
. +.+- + =|+||+|++||+|...+ -+.-||+|.|.+.++++.++..+.+-++...+++.+
T Consensus 266 ~L~v~G--~-~rVyeIg~~FR~E~~~~---rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 266 RLIVGG--F-ERVFEINRNFRNEGVSP---RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp HHHHTT--C-SEEEEEEEEECCSCCBT---TBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC--C-CcEEEeehheecCCCCC---CcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 2 2222 2 39999999999996533 378899999999999997776665555555555554
No 55
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.06 E-value=2.5e-05 Score=81.72 Aligned_cols=123 Identities=17% Similarity=0.141 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|....- + | +.+ |.+..+-. -+.-++|+- |-. +|.+
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~---e-----G-Ar~-F~v~~~~~--~~~~y~L~q-SPQ----l~kq 205 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP---E-----G-ARD-FLVPYRHE--PGLFYALPQ-SPQ----LFKQ 205 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---S-----S-SCC-CEEECTTS--TTEEEECCS-CSH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---C-----C-CCC-cccccccc--CCceeECcc-CHH----HHHH
Confidence 4678899999999999999999999999985421 1 1 122 55543210 013455764 332 3444
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
. +.+- + =|+||+|+|||+|-..+. |.=||+|.|.+.++++.++..+.+-++...+++.+.
T Consensus 206 ~Lmv~G--~-~rvfqI~~~FR~E~~~~~---r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~ 266 (580)
T 1l0w_A 206 MLMVAG--L-DRYFQIARCFRDEDLRAD---RQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREAL 266 (580)
T ss_dssp HHHHTT--C-SEEEEEEEEECCCCCCSS---CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhc--c-CCeEEEeceeeCCCCCCC---cCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3 3332 2 289999999999955333 667999999999999987776666666777777654
No 56
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=98.05 E-value=2.5e-05 Score=79.41 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|..... + |. .++|.+.-- +.+++|+-..+- +.+
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~---e-Gg-----~~~f~~~~~-----~~~~~L~~SpqL-----~lq 215 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQC---E-GG-----STLFKLQYF-----NEPAYLTQSSQL-----YLE 215 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC---------------CCCCEEEET-----TEEEEECSCCHH-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCC---C-Cc-----ccccccccc-----CCCcccccCHHH-----HHH
Confidence 4688999999999999999999999999976542 1 11 234544333 367888765542 222
Q ss_pred hHhcCCCCCeEEEeeecceecCCCCCCCcccc-hhheeccceeecCChhhHHHHHHHHHHHHHHH
Q 015762 97 WIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRS-REFLWQEGHTAFATKSEADDEILELYRRIYEE 160 (401)
Q Consensus 97 ~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~-REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~ 160 (401)
.+.. .+ =|+||+|+|||+|...+ . |- -||+|.|.+.++++.++..+.+-++...+++.
T Consensus 216 ~l~~--g~-~rVyeig~~FR~E~~~t-~--rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~ 274 (456)
T 3m4p_A 216 SVIA--SL-GKSFCMLSSYRAEQSRT-V--RHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDN 274 (456)
T ss_dssp TTHH--HH-SSEEEEEEEECCCSCCC-S--SCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHh--cc-CcEEEEEhheecCCCCC-C--cchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 2211 12 38999999999995322 2 33 49999999999998776655544444444443
No 57
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.03 E-value=2.9e-05 Score=81.34 Aligned_cols=122 Identities=17% Similarity=0.176 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|....- + | +.+ |.+..+-. -+.-++|+- |-. +|.+
T Consensus 137 ~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~---e-----G-Ar~-F~v~~~~~--~~~~y~L~q-SPQ----l~kq 199 (585)
T 1c0a_A 137 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATP---E-----G-ARD-YLVPSRVH--KGKFYALPQ-SPQ----LFKQ 199 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS---S-----S-SCC-CEEECSSS--TTCEEECCS-CSH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC---C-----C-Ccc-ceeccccc--CCceEeCcc-CHH----HHHH
Confidence 4678899999999999999999999999985431 1 1 123 55543210 013456763 332 3444
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
. +.+- + =|+||+|+|||+|-..+. |.=||+|.|.+.++++.++..+.+-++...+++.+
T Consensus 200 ~Lmv~G--~-~rvfqI~~~FR~E~~~t~---r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v 259 (585)
T 1c0a_A 200 LLMMSG--F-DRYYQIVKCFRDEDLRAD---RQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEV 259 (585)
T ss_dssp HHHHTT--C-CEEEEEEEEECCCCCBTT---BCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcC--C-CceEEEeceeecCCCCCC---cCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 3332 2 289999999999965333 76799999999999998777666556666666654
No 58
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=98.01 E-value=2.6e-05 Score=81.70 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHH-HcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHH
Q 015762 17 AISIWETMQKFFDAEIK-KMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFS 95 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~-~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~ 95 (401)
-++++..|...+|+.|. ..||.+|.||+|.... ..|- .+ |.+.... .+..++|+-..+ +|.
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st----~~GA-----~~-F~v~~~~---~g~~~~L~qSpq-----l~k 208 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRT----PGGA-----KE-FLVPSRE---PGKFYSLPQSPQ-----QFK 208 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCC----CSSS-----CC-CEEECSS---TTCEEECCSSTT-----HHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCC----CCCC-----cC-ceecccc---CCcccccccCHH-----HHH
Confidence 35788899999999996 7999999999998532 1221 12 4454431 136778875443 233
Q ss_pred Hh-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHH
Q 015762 96 KW-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYE 159 (401)
Q Consensus 96 ~~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~ 159 (401)
+. +.+. + =|+||+|+|||+|... .. |.-||+|.|.+.++++.++..+.+-++...++.
T Consensus 209 q~l~v~g--~-~rvfqi~~~FR~E~~~-t~--r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~ 267 (617)
T 4ah6_A 209 QLLMVGG--L-DRYFQVARCYRDEGSR-PD--RQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWP 267 (617)
T ss_dssp HHHHHTS--C-SEEEEEEEEECCCSSC-SS--SCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcc--c-CcEEEEEhheecccCC-CC--cCcceecceeeecCCCHHHHHHHHHHHHHHHHH
Confidence 33 2222 2 2999999999999543 34 889999999999999876655444444444443
No 59
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.99 E-value=1.8e-05 Score=80.97 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEecc-CCccChh-hhh---hhccCcccccccceEEEec--------------------
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYF-PLFVSPT-VLQ---KEKDHIEGFAPEVAWVTKS-------------------- 71 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~t-P~l~~~~-l~~---k~~gh~~~f~~e~y~~~~~-------------------- 71 (401)
+..-...+.+.+++.|...||+++.+ |.+++.. .|. ....|-.-=..+.|.+.+.
T Consensus 223 ~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~ 302 (508)
T 3l4g_A 223 HLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQ 302 (508)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhc
Confidence 44557788899999999999999875 7665532 121 1112210000112444331
Q ss_pred CCC-----------CCCCcEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeec
Q 015762 72 GES-----------DLEVPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAF 140 (401)
Q Consensus 72 g~~-----------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~ 140 (401)
|+. +-.+..+||+..++...++++...+..+..|+|+|++|+|||+|. .... ++.+|+|.++-.++
T Consensus 303 g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~-~Dat--HlpeFhQlegl~~~ 379 (508)
T 3l4g_A 303 GGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNET-LDAT--HLAEFHQIEGVVAD 379 (508)
T ss_dssp CBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSC-CCSS--SCSEEEEEEEEEEE
T ss_pred cccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCC-CCCC--cCCeEEEEEEEEEC
Confidence 000 001478999999998888887765433468999999999999994 4455 88999999998765
Q ss_pred CChhhHHHHHHHHHHHHHHHhC
Q 015762 141 ATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 141 ~~~~~a~~eil~~~~~i~~~l~ 162 (401)
.. -...++..+...+++.++
T Consensus 380 ~~--v~f~dLKg~Le~~l~~lG 399 (508)
T 3l4g_A 380 HG--LTLGHLMGVLREFFTKLG 399 (508)
T ss_dssp ES--CCHHHHHHHHHHHHHTTT
T ss_pred CC--CCHHHHHHHHHHHHHHcC
Confidence 32 223446677777888775
No 60
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=97.88 E-value=3.9e-05 Score=79.33 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHHHHH
Q 015762 17 AISIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYFSK 96 (401)
Q Consensus 17 g~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~~~ 96 (401)
-++++..|.+.+|+.|...||.+|.||+|.+..- + |+. +.|.+..-+ .+++|+-..+ ++.+
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~---e-gga-----~~F~v~~~~-----~~~yL~~Spq-----l~~k 303 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS---E-GGS-----NIFEVKYFD-----RKAYLAQSPQ-----LYKQ 303 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------------CCBCSCTH-----HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC---C-CCc-----ceeEEecCC-----CceEeccCHH-----HHHH
Confidence 3678899999999999999999999999987641 1 122 334433322 4567765443 3433
Q ss_pred h-HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecC-ChhhHHHHHHHHHHHHHHH
Q 015762 97 W-IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA-TKSEADDEILELYRRIYEE 160 (401)
Q Consensus 97 ~-i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~-~~~~a~~eil~~~~~i~~~ 160 (401)
. +.+ .+ =|+||+|+|||+|...+.- -.-||+|.|.+..+. +.++....+-++...++..
T Consensus 304 ~ll~~--g~-~rVfeI~~~FR~E~~~t~R--Hl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~ 364 (548)
T 3i7f_A 304 MAIMG--DF-RKVFEVGPVFRAENSNTRR--HLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDE 364 (548)
T ss_dssp HHHTT--TC-CEEEEEEEECCCSCCCSSS--CCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHH
T ss_pred HHHhc--Cc-CcEEEEeeeEecCCCCCCC--cchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 2 332 22 4999999999999542221 245999999998766 5566554444444444443
No 61
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.63 E-value=0.0004 Score=68.11 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHcCCeEeccCCccChhh-hhh---hccCcccccccceEEEecCC-------CCCCCcEEEcCCCCh
Q 015762 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQK---EKDHIEGFAPEVAWVTKSGE-------SDLEVPIAIRPTSET 88 (401)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l-~~k---~~gh~~~f~~e~y~~~~~g~-------~~l~~~l~LRPt~e~ 88 (401)
-...+.+.+++.|...||+++.+|.+++... |.. ...|-.-=..+.|++..-.. ...++..+||+...+
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp 181 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP 181 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence 4567888899999999999999999987542 221 11121000022344542110 001267899998888
Q ss_pred hHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 89 VMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 89 ~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
...+.++. ...|+|+|++|.|||.|..... ...||+|.++-.++.+..- ..+......+++.+
T Consensus 182 ~llr~l~~-----~~~piriFEiGrVFR~d~~d~t---H~pEF~qlegl~~g~~v~f--~dLKg~le~ll~~l 244 (350)
T 1b7y_A 182 MQVRYMVA-----HTPPFRIVVPGRVFRFEQTDAT---HEAVFHQLEGLVVGEGIAM--AHLKGAIYELAQAL 244 (350)
T ss_dssp HHHHHHHH-----CCSSEEEEEEEEEECCCCCCSS---CCSEEEEEEEEEEETTCCH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cCCCeeEEEeeeEEECCCCCCC---CCChhHEEEEEEECCCCCH--HHHHHHHHHHHHhh
Confidence 77766654 3679999999999998742222 4579999999998863221 22445555666655
No 62
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.52 E-value=0.00024 Score=73.10 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=58.0
Q ss_pred cEEEcCCCChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCC-CCCcccchhheeccceeecCChhhHHHHHHHHHHHH
Q 015762 79 PIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSN-PTPFIRSREFLWQEGHTAFATKSEADDEILELYRRI 157 (401)
Q Consensus 79 ~l~LRPt~e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~-~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i 157 (401)
..+|||+..+++....+... +++..|+|+|++|+|||.| .+ +.+ +++||+|.++-.++.+..- .++..+...+
T Consensus 180 ~svLRTsLlPgLL~~lr~N~-~r~~~pvrLFEIG~VFr~d-~~~d~t--h~~Ef~qLagli~G~~vdf--~dLKgilE~L 253 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIA-DKLPLPIKLFSIDRCFRRE-QGEDAT--RLYTYFSASCVLVDEELSV--DDGKAVAEAL 253 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTT-TTSCSSEEEEEEEEEECCC-TTCSSS--CCSEEEEEEEEEECSSCCH--HHHHHHHHHH
T ss_pred ccccCccchhhHHHHHHHHH-hCCCCCeeEEEEeeEEecC-cccccc--ccceeeEEEEEEECCCCCH--HHHHHHHHHH
Confidence 48999999988777666554 3457899999999999987 44 445 7799999999998863222 2355666777
Q ss_pred HHHhC
Q 015762 158 YEEFL 162 (401)
Q Consensus 158 ~~~l~ 162 (401)
++.++
T Consensus 254 L~~LG 258 (534)
T 2du3_A 254 LRQFG 258 (534)
T ss_dssp HGGGT
T ss_pred HHHcC
Confidence 77664
No 63
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=97.45 E-value=0.00065 Score=65.09 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEeccCCccChhh-hhhh---ccCcc-cccccceEEEecCCCCCCCcEEEcCCCChhHHHHH
Q 015762 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKE---KDHIE-GFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPYF 94 (401)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l-~~k~---~gh~~-~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~~ 94 (401)
-...+.+.+++.|...||+|+.+|.+.+... |... ..|-. .. .+.+++ .+..+||++..+.....+
T Consensus 54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~-~d~~~l--------~e~~vLRtsl~p~ll~~l 124 (294)
T 2rhq_A 54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDM-QDSFYI--------TDEILMRTHTSPVQARTM 124 (294)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCT-TTSCBS--------SSSEEECSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCcccccc-CCcEEE--------cCcceeeccCHHHHHHHH
Confidence 3567888889999999999999998877532 2211 01100 00 011222 256899999998887777
Q ss_pred HHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHh
Q 015762 95 SKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEF 161 (401)
Q Consensus 95 ~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l 161 (401)
+... ...|+++|++|.|||.|..... ...||+|.++-.++.+..- ..+......+++.+
T Consensus 125 ~~N~---~~~~~riFEiG~Vfr~d~~d~~---h~~Ef~~Le~~~~g~~~df--~dlKg~le~ll~~l 183 (294)
T 2rhq_A 125 EKRN---GQGPVKIICPGKVYRRDSDDAT---HSHQFTQIEGLVVDKNIKM--SDLKGTLELVAKKL 183 (294)
T ss_dssp HHTT---TCSCEEEEEEEEEECCCCCBTT---BCSEEEEEEEEEEESSCCH--HHHHHHHHHHHHHH
T ss_pred HhcC---CCCCccEEEEcCEEecCCCCCC---CCChhhEEEEEEECCCCCH--HHHHHHHHHHHHHH
Confidence 7654 3679999999999998632221 3469999999998843211 11334444555544
No 64
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.23 E-value=0.0013 Score=67.68 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc-cccccceEEEec--------------------------
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKS-------------------------- 71 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~-~f~~e~y~~~~~-------------------------- 71 (401)
.-...+.+.+++.|...||+++..|.++....-....||-. ...+..|++.+-
T Consensus 57 HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~ 136 (549)
T 2du7_A 57 HPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEK 136 (549)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccch
Confidence 34567888899999999999999999987654333444521 122225666521
Q ss_pred -------------CC---CC--------------------------------CCCcEEEcCCCChhHHHHHHHhHhcCCC
Q 015762 72 -------------GE---SD--------------------------------LEVPIAIRPTSETVMYPYFSKWIRGHRD 103 (401)
Q Consensus 72 -------------g~---~~--------------------------------l~~~l~LRPt~e~~i~~~~~~~i~s~~~ 103 (401)
+. .+ ..+..+||++..+++....+.... ++.
T Consensus 137 ~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~-r~~ 215 (549)
T 2du7_A 137 KERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIK-KRK 215 (549)
T ss_dssp SSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTT-TSC
T ss_pred hhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHh-cCC
Confidence 00 00 013578999998877766665543 357
Q ss_pred CCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 104 LPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 104 LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
.|+++|++|.|||.+...... +.+||+|.++-.++.+.. ..++......+++.++
T Consensus 216 ~pvrlFEiGrVFr~D~~~d~t--h~~ef~qLaglv~G~~vd--F~DLKG~Le~ll~~LG 270 (549)
T 2du7_A 216 LPLKLFSIDRCFRREQREDRS--HLMSYHSASCVVVGEDVS--VDDGKVVAEGLLAQFG 270 (549)
T ss_dssp SSEEEEEEEEECCCCSSCSSS--CCSCEEEEEEEEECTTCC--HHHHHHHHHHHHGGGT
T ss_pred CCeEEEEEeeEEecCCcccCc--CCCcceEEEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence 899999999999987310223 568999999999886322 2225566666666654
No 65
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.73 E-value=0.008 Score=62.56 Aligned_cols=138 Identities=11% Similarity=0.095 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc-cccccceEEEec--------------------------
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKS-------------------------- 71 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~-~f~~e~y~~~~~-------------------------- 71 (401)
.-...+.+.+++.|...||+++..|.++....-....||-. ...+..|++.+-
T Consensus 65 HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (648)
T 2odr_B 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (648)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 34567888899999999999999999986553323333411 011225555421
Q ss_pred ------------CC---C--------------------------------CCCCcEEEcCCCChhHHHHHHHhHhcCCCC
Q 015762 72 ------------GE---S--------------------------------DLEVPIAIRPTSETVMYPYFSKWIRGHRDL 104 (401)
Q Consensus 72 ------------g~---~--------------------------------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~L 104 (401)
++ . ...+..+||++..+++....+.... ....
T Consensus 145 ~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~-R~~~ 223 (648)
T 2odr_B 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMN-KKPL 223 (648)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTT-TSCS
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHh-cCCC
Confidence 00 0 0013579999998877766665543 3578
Q ss_pred CeEEEeeecceecCCC-CCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 105 PLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 105 Plk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
|+++|.+|.|||.+.. ... ...||+|.++-.++.+..- .++......+++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vdF--~DLKGvLE~LL~~LG 277 (648)
T 2odr_B 224 PFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFG 277 (648)
T ss_dssp CEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTT
T ss_pred CeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcC
Confidence 9999999999997631 111 3489999999888853221 224556666666654
No 66
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.72 E-value=0.0082 Score=62.58 Aligned_cols=138 Identities=11% Similarity=0.095 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc-cccccceEEEec--------------------------
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKS-------------------------- 71 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~-~f~~e~y~~~~~-------------------------- 71 (401)
.-...+.+.+++.|...||+++..|.++....-....||-. ...+..|++.+-
T Consensus 65 HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (665)
T 2odr_A 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (665)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 34567888899999999999999999986553323333411 011225555421
Q ss_pred ------------CC---C--------------------------------CCCCcEEEcCCCChhHHHHHHHhHhcCCCC
Q 015762 72 ------------GE---S--------------------------------DLEVPIAIRPTSETVMYPYFSKWIRGHRDL 104 (401)
Q Consensus 72 ------------g~---~--------------------------------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~L 104 (401)
++ . ...+..+||++..+++....+.... ....
T Consensus 145 ~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~~-R~~~ 223 (665)
T 2odr_A 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMN-KKPL 223 (665)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTT-TSCS
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHh-cCCC
Confidence 00 0 0013579999998877766665543 3578
Q ss_pred CeEEEeeecceecCCC-CCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 105 PLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 105 Plk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
|+++|.+|.|||.+.. ... ...||+|.++-.++.+..- .++......+++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vdF--~DLKGvLE~LL~~LG 277 (665)
T 2odr_A 224 PFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFG 277 (665)
T ss_dssp CEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTT
T ss_pred CeEEEEEeeEEecCcccccc---CCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcC
Confidence 9999999999997631 111 3489999999888853221 224556666666654
No 67
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.71 E-value=0.0085 Score=62.58 Aligned_cols=137 Identities=11% Similarity=0.097 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc-cccccceEEEec---------------------------
Q 015762 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKS--------------------------- 71 (401)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~-~f~~e~y~~~~~--------------------------- 71 (401)
-...+.+.+++.|...||+++..|.++....-....||-. ...+..|++.+-
T Consensus 66 Pl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~~ 145 (685)
T 2odr_D 66 PVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKE 145 (685)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhhh
Confidence 4567888899999999999999999986553323333411 011225555421
Q ss_pred -----------CC---C--------------------------------CCCCcEEEcCCCChhHHHHHHHhHhcCCCCC
Q 015762 72 -----------GE---S--------------------------------DLEVPIAIRPTSETVMYPYFSKWIRGHRDLP 105 (401)
Q Consensus 72 -----------g~---~--------------------------------~l~~~l~LRPt~e~~i~~~~~~~i~s~~~LP 105 (401)
++ . ...+..+||++..+++....+.... ....|
T Consensus 146 ~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~-R~~~p 224 (685)
T 2odr_D 146 SLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMN-KKPLP 224 (685)
T ss_dssp --------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTT-TSCSC
T ss_pred hhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHh-CCCCC
Confidence 00 0 0013579999998877766665543 35789
Q ss_pred eEEEeeecceecCCC-CCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 106 LKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 106 lk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
+++|.+|.|||.+.. ... ...||+|.++-.++.+..- .++......+++.++
T Consensus 225 vRLFEIGrVFR~D~~lDat---h~~Ef~qLeGlv~G~~vDF--~DLKGvLE~LL~~LG 277 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFG 277 (685)
T ss_dssp EEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTT
T ss_pred eEEEEeccEEecCcccccc---CCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcC
Confidence 999999999997631 111 3489999999888853221 224556666666654
No 68
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.62 E-value=0.0082 Score=62.87 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcc-cccccceEEEec--------------------------
Q 015762 19 SIWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIE-GFAPEVAWVTKS-------------------------- 71 (401)
Q Consensus 19 ~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~-~f~~e~y~~~~~-------------------------- 71 (401)
.-...+.+.+++.|...||+++..|.++....-....||-. ...+..|.+.+-
T Consensus 65 HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (701)
T 2odr_C 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (701)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 34567888899999999999999999986553323333411 011225555531
Q ss_pred ------------CC---CC--------------------------------CCCcEEEcCCCChhHHHHHHHhHhcCCCC
Q 015762 72 ------------GE---SD--------------------------------LEVPIAIRPTSETVMYPYFSKWIRGHRDL 104 (401)
Q Consensus 72 ------------g~---~~--------------------------------l~~~l~LRPt~e~~i~~~~~~~i~s~~~L 104 (401)
++ .+ ..+..+||++..+++....+.... ....
T Consensus 145 ~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~-R~~~ 223 (701)
T 2odr_C 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMN-KKPL 223 (701)
T ss_dssp ---------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTT-TSCS
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHh-CCCC
Confidence 00 00 002468999998877766666543 3578
Q ss_pred CeEEEeeecceecCCC-CCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 105 PLKLNQWCNVVRWEFS-NPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 105 Plk~~q~~~vfR~E~~-~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
|+++|++|.|||.+.. ... ...||+|.++-.++.+..- .++......+++.++
T Consensus 224 pvRLFEIGrVFR~D~~lDat---h~~EfhqLeGlv~G~~vDF--~DLKGvLE~LL~~LG 277 (701)
T 2odr_C 224 PFKLFSIDRCFRREQKEDKS---HLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFG 277 (701)
T ss_dssp CEEEEEEEEEECCCSCCCSS---CCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTT
T ss_pred CeEEEEEeeEEccCcccccc---CCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcC
Confidence 9999999999997631 111 3489999999888852221 224556666666654
No 69
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.37 E-value=0.0042 Score=60.22 Aligned_cols=107 Identities=10% Similarity=0.086 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeEeccCCccChh-hhhh---hccCcccccccceEEEecCCCCCCCcEEEcCCCChhHHHH
Q 015762 18 ISIWETMQKFFDAEIKKMKIQNCYFPLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTSETVMYPY 93 (401)
Q Consensus 18 ~~i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~-l~~k---~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~e~~i~~~ 93 (401)
..-...+.+.+++.|...||+++.+|.+++.. .|.. ..+|-.--..+.|.+ ++..+||....+...+.
T Consensus 106 ~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i--------~e~~vLRThtsp~~lr~ 177 (327)
T 3pco_A 106 LHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF--------DTTRLLRTQTSGVQIRT 177 (327)
T ss_dssp CCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS--------SSSCEECSCTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe--------CCCceecccCCHHHHHH
Confidence 34567788889999999999999999986532 2211 112210000113333 25679999877766555
Q ss_pred HHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecC
Q 015762 94 FSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFA 141 (401)
Q Consensus 94 ~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~ 141 (401)
++. +..|++++++|.|||.+ .. .. .+.+|+|.++-.++.
T Consensus 178 l~~-----~~~pirifeiGrVyR~d-~d-~t--h~p~fhqlegl~v~~ 216 (327)
T 3pco_A 178 MKA-----QQPPIRIIAPGRVYRND-YD-QT--HTPMFHQMEGLIVDT 216 (327)
T ss_dssp HTT-----CCSSCCBCCEECCBCSC-CB-TT--BCSBCCEEEEEEEET
T ss_pred HHh-----CCCCeeEEeeccEEecC-CC-cc--cCCcccEEEEEEECC
Confidence 432 46899999999999998 32 22 556799998877653
No 70
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.91 E-value=0.044 Score=57.31 Aligned_cols=129 Identities=11% Similarity=0.031 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChhh-hhhhccCcccccccceEEEecCCCCC-CCcEEEcCCCChhHHHHHHHhH
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTV-LQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l-~~k~~gh~~~f~~e~y~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~i 98 (401)
.+.+.+.+++.+...||+|+.|+.|...+. +. .-+.-.+ ..+...+.. ++ .+.-+||++.-+++...++...
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~-~l~~~~~-~~~~v~L~N----Pis~e~svmRtsLlpgLL~~l~~N~ 466 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIAD-KLGVDIS-ATKAVHISN----PKTAEFQVARTTLLPGLLKTIAANR 466 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTG-GGTSCTT-SSCCCBBSS----CSSGGGSEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHH-HhCCCCC-CCCeEEEcC----CCchhHhHHHHHHHHHHHHHHHHHh
Confidence 456688889999999999999999998873 32 1110000 011222221 11 2457899999998888777764
Q ss_pred hcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChhhHHHHHHHHHHHHHHHhC
Q 015762 99 RGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKSEADDEILELYRRIYEEFL 162 (401)
Q Consensus 99 ~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~~a~~eil~~~~~i~~~l~ 162 (401)
+ +..|+|+|++|.|||.+..... ..+|+.+..+...|.... -.++-.+...+++.++
T Consensus 467 ~--~~~~vrlFEiG~Vf~~d~~~~~---~~~e~~~la~~~~g~~~~--f~~lkg~le~ll~~lg 523 (589)
T 3l4g_B 467 K--MPLPLKLFEISDIVIKDSNTDV---GAKNYRHLCAVYYNKNPG--FEIIHGLLDRIMQLLD 523 (589)
T ss_dssp T--SCSCEEEEEEEEEEEECTTSTT---SEEEEEEEEEEEESSSCC--HHHHHHHHHHHHHHTT
T ss_pred c--CCCceEEEEeeeEEecCCcccc---CCccccEEEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence 4 3579999999999998732222 357888888777664321 1224455567777664
No 71
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=94.08 E-value=0.13 Score=46.51 Aligned_cols=136 Identities=10% Similarity=0.006 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCC-CCcEEEcCCCChhHHHHHHHhHh
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKWIR 99 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~i~ 99 (401)
.+.+++.+++.+...||+|+.|-.|.+.+.+.+ -+..+ ..+...+.. ++ ++.-+||++.-+++....+..+.
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~--~~~~v~l~N----Pls~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHP--REMAVELMN----PLSQELNCMRQTLLFGGLETLSHNLR 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSC--GGGCCBCSS----BSCSSEEEECSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccC--cCCeEEecC----CccHHHHHHHHHhHHHHHHHHHHHHc
Confidence 356788899999999999999999998876642 11000 011111211 11 35678999999998887777664
Q ss_pred cCCCCCeEEEeeecceecCCCCC---CCcccchhheeccceeecCCh--------hhHHHH-HHHHHHHHHHHhCccc
Q 015762 100 GHRDLPLKLNQWCNVVRWEFSNP---TPFIRSREFLWQEGHTAFATK--------SEADDE-ILELYRRIYEEFLAVP 165 (401)
Q Consensus 100 s~~~LPlk~~q~~~vfR~E~~~~---~gllR~REF~q~e~~~~~~~~--------~~a~~e-il~~~~~i~~~l~~ip 165 (401)
++.-++++|++|+||+.+.... .++--.+|..+..+-+.|... ..++-. +..+...++..++ ++
T Consensus 79 -r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lg-i~ 154 (213)
T 3ica_A 79 -RKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVG-IE 154 (213)
T ss_dssp -TTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTT-CC
T ss_pred -CCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhC-CC
Confidence 2234599999999999763110 111123555555544444321 122222 5667777777765 44
No 72
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=93.63 E-value=0.16 Score=45.96 Aligned_cols=136 Identities=6% Similarity=-0.002 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEe-cCCCCCCCcEEEcCCCChhHHHHHHHhHh
Q 015762 21 WETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFSKWIR 99 (401)
Q Consensus 21 ~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~~~i~ 99 (401)
.+.+++.+++.+...||+|+.|-.|...+.+.+ -+..+ ..+...+.. -+ ++.-+||++.-+++...++..+.
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~--~~~~v~l~NPls----~e~~vmRtsLlpgLL~~~~~N~~ 78 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYP--SKNLVMLLNPLS----ADLNCMRQTLLFGGLESIAHNAN 78 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSC--GGGCEEBSSGGG----CSCCEECSCSHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccC--cCCeEEEeCCcc----hhHHHHHHHhHHHHHHHHHHHhc
Confidence 346788889999999999999999999887642 11000 012223322 11 25678999999988877777654
Q ss_pred cCCCCCeEEEeeecceecCCCCC---CCcccchhheeccceeecC--------ChhhHHHH-HHHHHHHHHHHhCccc
Q 015762 100 GHRDLPLKLNQWCNVVRWEFSNP---TPFIRSREFLWQEGHTAFA--------TKSEADDE-ILELYRRIYEEFLAVP 165 (401)
Q Consensus 100 s~~~LPlk~~q~~~vfR~E~~~~---~gllR~REF~q~e~~~~~~--------~~~~a~~e-il~~~~~i~~~l~~ip 165 (401)
++.-++++|++|+||+.+.... .+.-..+|..+..+-+.|. ....++-. +-.+...++..++ ++
T Consensus 79 -r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg-~~ 154 (213)
T 3ig2_A 79 -RKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLG-LD 154 (213)
T ss_dssp -----CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTT-BC
T ss_pred -CCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhC-CC
Confidence 2244699999999999763110 1111234555444433342 11223333 6667777787775 44
No 73
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=93.63 E-value=0.52 Score=50.96 Aligned_cols=129 Identities=10% Similarity=-0.017 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCccccccc-ceEEEecCCCCC-CCcEEEcCCCChhHHHHHHHh
Q 015762 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPE-VAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKW 97 (401)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e-~y~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~ 97 (401)
-.+.+.+.+++.+...||+|+.|..|...+.+ ..-+ . ..+ .+.+.. ++ ++.-+||++.-+++...+++.
T Consensus 494 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~--~--~~~~~v~L~N----Pis~e~svLRtsLlpgLL~~l~~N 564 (795)
T 2rhq_B 494 DRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFA--L--QERPTISLLM----PMSEAHATLRQSLLPHLIEATAYN 564 (795)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTC--S--SCCCCEECSS----CSCTTSSEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhC--C--CCCceEEEcC----CCchhhhhhhhccHHHHHHHHHHH
Confidence 35667888999999999999999999887654 2111 0 122 233321 11 245689999999988888776
Q ss_pred HhcCCCCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChh--------hHHHH-HHHHHHHHHHHhC
Q 015762 98 IRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS--------EADDE-ILELYRRIYEEFL 162 (401)
Q Consensus 98 i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~--------~a~~e-il~~~~~i~~~l~ 162 (401)
.. +...|+++|++|.|||.+.. ... . +||++..+-..|...+ .++-. +......+++.++
T Consensus 565 ~~-r~~~~vrlFEiG~Vf~~d~~-~~~--~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG 633 (795)
T 2rhq_B 565 VA-RKNKDVRLYEIGRVFFGNGE-GEL--P-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLN 633 (795)
T ss_dssp HH-TTCCCEEEEEEEEEEECCCT-TSC--C-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHT
T ss_pred hc-CCCCCeEEEEEeeEEecCCc-ccC--c-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 54 34689999999999996521 111 2 7888877766564311 12222 5566677777664
No 74
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=92.80 E-value=0.44 Score=51.37 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEe-cCCCCCCCcEEEcCCCChhHHHHHHHhH
Q 015762 20 IWETMQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTK-SGESDLEVPIAIRPTSETVMYPYFSKWI 98 (401)
Q Consensus 20 i~~~i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~-~g~~~l~~~l~LRPt~e~~i~~~~~~~i 98 (401)
-.+.+.+.+++.+...||+|+.|-.|...+.+. .-+ . ..+.+.+.. -+ ++.-+||++.-+++...+++..
T Consensus 490 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~-~l~---~-~~~~v~L~NPis----~d~svLRtsLlpgLL~~l~~N~ 560 (785)
T 1b7y_B 490 APYRKEQRLREVLSGLGFQEVYTYSFMDPEDAR-RFR---L-DPPRLLLLNPLA----PEKAALRTHLFPGLVRVLKENL 560 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCEECCCCSEECTTHHH-HTT---C-CCCSCEESSCSS----TTSSEECSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCcccCHHHHH-hcC---C-CCCeEEEcCCCc----hhhhhhhhhhHHHHHHHHHHHh
Confidence 356678889999999999999988888876552 111 0 122233332 11 2456899999999888887765
Q ss_pred hcCC-CCCeEEEeeecceecCCCCCCCcccchhheeccceeecCChh-------hHHHH-HHHHHHHHHHHhC
Q 015762 99 RGHR-DLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKS-------EADDE-ILELYRRIYEEFL 162 (401)
Q Consensus 99 ~s~~-~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~~~~~~~-------~a~~e-il~~~~~i~~~l~ 162 (401)
. +. ..|+++|++|.||| + +|+++..+-..|...+ .++-. +......++..++
T Consensus 561 ~-r~~~~~vrlFEiG~Vf~-~----------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lg 621 (785)
T 1b7y_B 561 D-LDRPERALLFEVGRVFR-E----------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLG 621 (785)
T ss_dssp H-HSCCSCEEEEEEEEEES-S----------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHT
T ss_pred h-cCCCCCeEEEEEeeeec-c----------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcC
Confidence 4 23 57999999999998 2 6777776665554311 12222 5566667777664
No 75
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=92.40 E-value=0.86 Score=45.42 Aligned_cols=101 Identities=10% Similarity=-0.004 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHc--------CCeEecc-CCccChh-hhhh---hccCcccccccceEEEecCCCCCCCcEEEcCCC
Q 015762 20 IWETMQKFFDAEIKKM--------KIQNCYF-PLFVSPT-VLQK---EKDHIEGFAPEVAWVTKSGESDLEVPIAIRPTS 86 (401)
Q Consensus 20 i~~~i~~~~~~~~~~~--------G~~~i~t-P~l~~~~-l~~k---~~gh~~~f~~e~y~~~~~g~~~l~~~l~LRPt~ 86 (401)
-...+.+.+++.|... ||+++.+ |.+++.. .|.. ...|-.--..+.|++ ++..+||...
T Consensus 49 Pl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi--------~~~~vLRTht 120 (415)
T 3cmq_A 49 PLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL--------NRTHMLRAHT 120 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS--------SSSEEECSSG
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe--------cCCeEEcCCC
Confidence 3456667777777666 9999998 6666443 3321 122210001123333 3568999877
Q ss_pred ChhHHHHHHHhHhcCCCCCeEEEeeecceecCCCCCCCcccchhheecccee
Q 015762 87 ETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHT 138 (401)
Q Consensus 87 e~~i~~~~~~~i~s~~~LPlk~~q~~~vfR~E~~~~~gllR~REF~q~e~~~ 138 (401)
.+....+++. . .| |++..|.|||.+.- ... .+-+|+|.++-.
T Consensus 121 s~~~~~~l~~----~--~~-k~~~~G~VyR~D~~-da~--h~n~fhQ~egv~ 162 (415)
T 3cmq_A 121 SAHQWDLLHA----G--LD-AFLVVGDVYRRDQI-DSQ--HYPIFHQLEAVR 162 (415)
T ss_dssp GGGHHHHHHT----T--CS-EEEEEEEEECCCCC-BTT--BCSEEEEEEEEE
T ss_pred cHHHHHHHHH----C--CC-CEEEeeeEEeccch-hhh--hhHHhcCCCcEE
Confidence 7766666543 2 36 99999999999842 223 566778777543
No 76
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=66.06 E-value=11 Score=40.47 Aligned_cols=85 Identities=13% Similarity=-0.027 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCeEeccCCccChhhhhhhccCcccccccceEEEecCCCCC-CCcEEEcCCCChhHHHHHHHhHhcCC
Q 015762 24 MQKFFDAEIKKMKIQNCYFPLFVSPTVLQKEKDHIEGFAPEVAWVTKSGESDL-EVPIAIRPTSETVMYPYFSKWIRGHR 102 (401)
Q Consensus 24 i~~~~~~~~~~~G~~~i~tP~l~~~~l~~k~~gh~~~f~~e~y~~~~~g~~~l-~~~l~LRPt~e~~i~~~~~~~i~s~~ 102 (401)
..+.+++.+...||+|+.|-.|.+.+.+.+ .+. ..+...+.. ++ ++.=+||++.-+++....+.... ++
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~----~~~~v~l~N----Pis~e~svmRtsLlpgLL~~~~~N~~-r~ 563 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP----GVEALLLPS----PISVEMSAMRLSLWTGLLATVVYNQN-RQ 563 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS----SCCCCBCSS----CSCSTTCEECSSSHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC----CCCeEEEcC----CCchhHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 456678888999999999999999887642 221 011111111 11 35668999999998887777664 34
Q ss_pred CCCeEEEeeecceecC
Q 015762 103 DLPLKLNQWCNVVRWE 118 (401)
Q Consensus 103 ~LPlk~~q~~~vfR~E 118 (401)
..++++|++|.||..+
T Consensus 564 ~~~v~lFEiG~Vf~~~ 579 (795)
T 3pco_B 564 QNRVRIFESGLRFVPD 579 (795)
T ss_dssp CCCCEEEEEEEEEEEC
T ss_pred CCCccEEEeeeEEecC
Confidence 5679999999999876
No 77
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=65.58 E-value=2.4 Score=33.21 Aligned_cols=27 Identities=30% Similarity=0.764 Sum_probs=20.4
Q ss_pred eeeecCHHHHHHHhcC--CCEEE----eecCCC
Q 015762 322 IQIVKTWDEFVEALGQ--RKMIL----APWCDE 348 (401)
Q Consensus 322 ~~~~~~~~e~~~~~~~--~~~~~----~pwc~~ 348 (401)
+..++|.++|.+.|++ +++|+ +|||+.
T Consensus 2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~ 34 (105)
T 3zzx_A 2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGP 34 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHH
T ss_pred eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCC
Confidence 5678999999999853 45544 799974
No 78
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=60.48 E-value=16 Score=33.30 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=47.2
Q ss_pred CCCceEEEEEcCCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEeC
Q 015762 201 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEIG 268 (401)
Q Consensus 201 iap~qV~Iipi~~~~~------~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iiiG 268 (401)
+.|.||.+||=...+- +-....+....+.++|+++||||.+.-..+ -.++..|...|.|. |++-
T Consensus 86 ~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd---~~qi~aA~~~GA~~-IELh 155 (243)
T 1m5w_A 86 TKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD---EEQIKAAAEVGAPF-IEIH 155 (243)
T ss_dssp HCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC---HHHHHHHHHTTCSE-EEEE
T ss_pred cCCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEEe
Confidence 4788999999543211 222356778899999999999999876542 26899999999996 5653
No 79
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=53.92 E-value=15 Score=34.11 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=45.5
Q ss_pred CCCceEEEEEcCCCCC------ChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEe
Q 015762 201 VASVQVIVIPVPYKDA------DTQGIFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEI 267 (401)
Q Consensus 201 iap~qV~Iipi~~~~~------~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iii 267 (401)
+.|.||.+||=....- +-....+....+.++|+++||||.+.-..+ -.++..|.+.|.|+ |++
T Consensus 114 ~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd---~~qI~aA~~~GAd~-IEL 182 (278)
T 3gk0_A 114 IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPD---EAQIRAAHETGAPV-IEL 182 (278)
T ss_dssp HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSC---HHHHHHHHHHTCSE-EEE
T ss_pred cCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCcCE-EEE
Confidence 4788999999542110 112245677788899999999999876432 25899999999996 677
No 80
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=46.58 E-value=14 Score=27.98 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=18.9
Q ss_pred CeeeecCHHHHHHHhcC---CCE----EEeecCCC
Q 015762 321 CIQIVKTWDEFVEALGQ---RKM----ILAPWCDE 348 (401)
Q Consensus 321 ~~~~~~~~~e~~~~~~~---~~~----~~~pwc~~ 348 (401)
+++.+++.++|.+.+.+ ++. .-+|||+.
T Consensus 1 ~v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~ 35 (112)
T 3d6i_A 1 PVIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEP 35 (112)
T ss_dssp CEEEECCHHHHHHHHTTTTTTCCEEEEEECCC--C
T ss_pred CccccCCHHHHHHHHhcccCCCEEEEEEECCCCHH
Confidence 36778898999999974 543 33789985
No 81
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=46.58 E-value=12 Score=34.51 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=44.0
Q ss_pred CCCceEEEEEcCCCCCChhh----HHHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCCCEEEEe
Q 015762 201 VASVQVIVIPVPYKDADTQG----IFDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGVPLRIEI 267 (401)
Q Consensus 201 iap~qV~Iipi~~~~~~~~~----~~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~GvP~~iii 267 (401)
+.|.||.+||=....-+++. ..+....+.++|+++||||.+.-..+ -.++..|...|+++ |++
T Consensus 85 ~kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDpd---~~qi~aA~~~GAd~-IEL 151 (260)
T 3o6c_A 85 LKPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINPS---LEDIEKSKILKAQF-IEL 151 (260)
T ss_dssp HCCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECSC---HHHHHHHHHTTCSE-EEE
T ss_pred cCCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHhCCCE-EEE
Confidence 47889999995422111110 23455677889999999999876432 35899999999996 677
No 82
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=40.81 E-value=18 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.812 Sum_probs=21.7
Q ss_pred CeeeecCHHHHHHHhcCCCE----EEeecCCC
Q 015762 321 CIQIVKTWDEFVEALGQRKM----ILAPWCDE 348 (401)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~----~~~pwc~~ 348 (401)
.+..++|.++|.+++++++. .-+|||+.
T Consensus 16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~ 47 (121)
T 2j23_A 16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGP 47 (121)
T ss_dssp CEEECCSHHHHHHHHSSSSCEEEEEECTTCST
T ss_pred ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHh
Confidence 46778999999999976663 34789975
No 83
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=36.62 E-value=14 Score=29.38 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=21.4
Q ss_pred cCeeeecCHHHHHHHhcCCCEE----EeecCCC
Q 015762 320 ACIQIVKTWDEFVEALGQRKMI----LAPWCDE 348 (401)
Q Consensus 320 ~~~~~~~~~~e~~~~~~~~~~~----~~pwc~~ 348 (401)
..++.+++.++|.+++++++.+ -+|||+.
T Consensus 19 ~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~ 51 (125)
T 1r26_A 19 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGP 51 (125)
T ss_dssp SCCEEECCHHHHHHHHHSSSCEEEEEECTTCHH
T ss_pred cceEECCCHHHHHHHHccCCEEEEEEECCcCHh
Confidence 3467789999999999766633 3689863
No 84
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=36.33 E-value=21 Score=28.61 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=24.8
Q ss_pred HHcCeeeecCHHHHHHHhcCCCEEE----eecCCChh
Q 015762 318 RDACIQIVKTWDEFVEALGQRKMIL----APWCDEEE 350 (401)
Q Consensus 318 ~~~~~~~~~~~~e~~~~~~~~~~~~----~pwc~~~~ 350 (401)
++++...++|.++|.+.+++++.++ +-|||...
T Consensus 4 ~~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~ 40 (112)
T 3iv4_A 4 FQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISA 40 (112)
T ss_dssp GGGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHH
T ss_pred hhcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHH
Confidence 4678889999999999997655444 34998543
No 85
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=35.77 E-value=16 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=19.7
Q ss_pred CeeeecCHHHHHHHh--cCCCE----EEeecCCC
Q 015762 321 CIQIVKTWDEFVEAL--GQRKM----ILAPWCDE 348 (401)
Q Consensus 321 ~~~~~~~~~e~~~~~--~~~~~----~~~pwc~~ 348 (401)
++..++|.++|.+.+ ++++. .-+|||+.
T Consensus 2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~ 35 (107)
T 1gh2_A 2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGP 35 (107)
T ss_dssp CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHH
T ss_pred ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChh
Confidence 466788888999888 34553 33689964
No 86
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=34.99 E-value=19 Score=26.76 Aligned_cols=27 Identities=30% Similarity=0.716 Sum_probs=19.3
Q ss_pred eeeecCHHHHHHHhc--CCCEEE----eecCCC
Q 015762 322 IQIVKTWDEFVEALG--QRKMIL----APWCDE 348 (401)
Q Consensus 322 ~~~~~~~~e~~~~~~--~~~~~~----~pwc~~ 348 (401)
+..++|.+++.+.++ +++.++ +|||+.
T Consensus 2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~ 34 (105)
T 3m9j_A 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGP 34 (105)
T ss_dssp CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHH
T ss_pred eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChh
Confidence 456889999999887 555433 489853
No 87
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=33.80 E-value=81 Score=24.70 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCC
Q 015762 204 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD 245 (401)
Q Consensus 204 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~ 245 (401)
..+.|+|++ .+ +.+.++..++.+.|++.|+...+....
T Consensus 5 ve~sv~Plg-~~---~svs~~Va~~i~vl~~sGl~y~~~pmg 42 (104)
T 2ibo_A 5 IALQVLPLV-QG---IDRIAVIDQVIAYLQTQEVTMVVTPFE 42 (104)
T ss_dssp EEEEEEECS-CS---HHHHHHHHHHHHHHHHSSSEEEECSSC
T ss_pred EEEEEEcCC-CC---CcHHHHHHHHHHHHHHcCCCeEecCCc
Confidence 467889998 22 678899999999999999999987753
No 88
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=29.82 E-value=24 Score=26.79 Aligned_cols=27 Identities=37% Similarity=0.724 Sum_probs=19.7
Q ss_pred eeeecCHHHHHHHhcCCCEEE----eecCCC
Q 015762 322 IQIVKTWDEFVEALGQRKMIL----APWCDE 348 (401)
Q Consensus 322 ~~~~~~~~e~~~~~~~~~~~~----~pwc~~ 348 (401)
...-.|.++|.+++++++.++ +|||+.
T Consensus 8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~ 38 (109)
T 3f3q_A 8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGP 38 (109)
T ss_dssp CEECCSHHHHHHHTTSSSCEEEEEECTTCHH
T ss_pred ccCCCCHHHHHHHHhcCCEEEEEEECCcCHh
Confidence 344578999999998777544 689953
No 89
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=29.74 E-value=76 Score=27.36 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCCChhhH-HHHHHHHHHHHhhCCCEEEEcCCCCCCHHHHHHHHHHhCC
Q 015762 203 SVQVIVIPVPYKDADTQGI-FDACTATVEKLCEAGIRANSDFRDNYSPGWKYSHWEMKGV 261 (401)
Q Consensus 203 p~qV~Iipi~~~~~~~~~~-~~~a~~l~~~Lr~~Girv~iD~~~~~s~g~k~~~ae~~Gv 261 (401)
.++|.|---+ ++. ...+..|...|.+.||++.+|+++ ...|..+...-..+|
T Consensus 8 ~yDVFiSfrg------~D~r~~Fv~~L~~~L~~~gi~~f~D~~~-l~~G~~i~~~l~~aI 60 (176)
T 3jrn_A 8 KYDVFLSFRG------HDTRHNFISFLYKELVRRSIRTFKDDKE-LENGQRFSPELKSPI 60 (176)
T ss_dssp CEEEEEEECH------HHHTTTHHHHHHHHHHHTTCCEECCCC---------------CC
T ss_pred CCeEEEECcC------cccChHHHHHHHHHHHHCCCEEEEEccc-ccCCCchHHHHHHHH
Confidence 4677765433 222 246778999999999999999876 477877765443444
No 90
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=28.79 E-value=73 Score=27.51 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHhhCC--CE-EEEcCCCCCCHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeechhhHH
Q 015762 220 GIFDACTATVEKLCEAG--IR-ANSDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLPRGSLV 296 (401)
Q Consensus 220 ~~~~~a~~l~~~Lr~~G--ir-v~iD~~~~~s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~~~el~ 296 (401)
.......++++.+...+ +. +.+|...+..+. ....-.|+|..+++. +|... + -.| ..+.+++.
T Consensus 49 ~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~---~~~~v~~~Pt~~~~~-----~g~~~--~-~~g---~~~~~~l~ 114 (241)
T 3idv_A 49 QFAPEYEKIANILKDKDPPIPVAKIDATSASVLA---SRFDVSGYPTIKILK-----KGQAV--D-YEG---SRTQEEIV 114 (241)
T ss_dssp HHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHH---HHTTCCSSSEEEEEE-----TTEEE--E-CCS---CSCHHHHH
T ss_pred HhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHH---HhcCCCcCCEEEEEc-----CCCcc--c-ccC---cccHHHHH
Confidence 45566677888887654 43 345554322233 344568999988883 34433 2 233 23556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcCCCEE----EeecCCC
Q 015762 297 ERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMI----LAPWCDE 348 (401)
Q Consensus 297 ~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~----~~pwc~~ 348 (401)
+.+.+.+.. +..... ..+...+-++|...+++++.+ -+|||+.
T Consensus 115 ~~i~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~ 161 (241)
T 3idv_A 115 AKVREVSQP--------DWTPPP-EVTLVLTKENFDEVVNDADIILVEFYAPWCGH 161 (241)
T ss_dssp HHHHHHHST--------TCCCCC-CSSEECCTTTHHHHHHHCSEEEEEEECTTCTG
T ss_pred HHHhhccCc--------cccccc-ccceeccHHHHHHhhccCCeEEEEEECCCCHH
Confidence 666554331 000111 123334456666666655533 3689974
No 91
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.43 E-value=62 Score=27.76 Aligned_cols=77 Identities=17% Similarity=0.131 Sum_probs=48.7
Q ss_pred HHHHHHHhhCCCEEEEcCCCCCCH-------------HHHHHH----HHHhCCCEEEEeCccccCCCeEEEEECCCCcee
Q 015762 226 TATVEKLCEAGIRANSDFRDNYSP-------------GWKYSH----WEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKI 288 (401)
Q Consensus 226 ~~l~~~Lr~~Girv~iD~~~~~s~-------------g~k~~~----ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~ 288 (401)
..+.+-|++.=|-...|... +- |.+... ..-.+.|+.++|.++ ++.+.+..+-.|
T Consensus 81 ~~V~~~l~~nfV~w~~dv~~--~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~---~~~~~vl~~~~G--- 152 (178)
T 2ec4_A 81 ESIVSYLSQNFITWAWDLTK--DSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGK---RSSNEVLNVIQG--- 152 (178)
T ss_dssp HHHHHHHHHTEEEEEEECCS--HHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCC---SSCCCEEEEECS---
T ss_pred HHHHHHHHcCEEEEEEeCCC--chhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcC---CCceEEEEEEeC---
Confidence 35677777643444556543 22 333332 245789999999876 344555555555
Q ss_pred eechhhHHHHHHHHHHHHHHHH
Q 015762 289 DLPRGSLVERVKELLEEVQESL 310 (401)
Q Consensus 289 ~v~~~el~~~i~~~l~~~~~~l 310 (401)
.++.+++.+.+.+.++..+..|
T Consensus 153 ~~~~~~ll~~L~~~~e~~~~~l 174 (178)
T 2ec4_A 153 NTTVDELMMRLMAAMEIFTAQQ 174 (178)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHhhHhh
Confidence 4688999999888888766554
No 92
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=27.74 E-value=1.4e+02 Score=25.56 Aligned_cols=53 Identities=6% Similarity=-0.150 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHhhC-CCEEEEcCC--CCCCHHHHHHHHHHhCCCEEEEeCccc
Q 015762 219 QGIFDACTATVEKLCEA-GIRANSDFR--DNYSPGWKYSHWEMKGVPLRIEIGPKD 271 (401)
Q Consensus 219 ~~~~~~a~~l~~~Lr~~-Girv~iD~~--~~~s~g~k~~~ae~~GvP~~iiiG~kE 271 (401)
+-.++.|.++.+.|++. |++|.+.-. ...++..+...|+..+.-+.|-|--+-
T Consensus 28 ~~~l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na 83 (179)
T 1jwq_A 28 TFNLAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANS 83 (179)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCC
Confidence 44678899999999999 999998422 125799999999999999999885444
No 93
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=27.24 E-value=21 Score=27.63 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=20.5
Q ss_pred CeeeecCHHHHHHHhcCCCEE----EeecCCC
Q 015762 321 CIQIVKTWDEFVEALGQRKMI----LAPWCDE 348 (401)
Q Consensus 321 ~~~~~~~~~e~~~~~~~~~~~----~~pwc~~ 348 (401)
.+..+++.+++..++++++.+ -+|||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~ 44 (114)
T 2oe3_A 13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGP 44 (114)
T ss_dssp GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHH
T ss_pred heeecCCHHHHHHHHhCCCEEEEEEECCCCHH
Confidence 456678899999988877643 3689863
No 94
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=26.84 E-value=1.4e+02 Score=19.58 Aligned_cols=50 Identities=16% Similarity=-0.009 Sum_probs=32.7
Q ss_pred eeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhc
Q 015762 287 KIDLPRGSLVERVKELLEEVQESLFVAAKQRRDACIQIVKTWDEFVEALG 336 (401)
Q Consensus 287 k~~v~~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~ 336 (401)
...|+.+++...+..+-......-.+...+..+.+---.=|++||...+.
T Consensus 14 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~ 63 (66)
T 3li6_A 14 DGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYG 63 (66)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHT
T ss_pred CCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 45788889888887765555555555555555544333456888888775
No 95
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=26.23 E-value=7.2 Score=29.58 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=13.4
Q ss_pred eeecCHHHHHHHhcCCCEE----EeecCCC
Q 015762 323 QIVKTWDEFVEALGQRKMI----LAPWCDE 348 (401)
Q Consensus 323 ~~~~~~~e~~~~~~~~~~~----~~pwc~~ 348 (401)
..++|.++|.+++++++.+ -+|||+.
T Consensus 3 ~~i~~~~~~~~~~~~~~~vlv~f~a~wC~~ 32 (105)
T 4euy_A 3 NTFKTIEELATYIEEQQLVLLFIKTENCGV 32 (105)
T ss_dssp -------CCSSSTTCSSEEEEEEEESSCHH
T ss_pred cccCCHHHHHHHHhcCCCEEEEEeCCCCcc
Confidence 4567777788778766643 3689964
No 96
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=25.12 E-value=66 Score=29.14 Aligned_cols=30 Identities=10% Similarity=0.153 Sum_probs=21.4
Q ss_pred cCeeeecCHHHHHHHhcC---CCEEE----eecCCCh
Q 015762 320 ACIQIVKTWDEFVEALGQ---RKMIL----APWCDEE 349 (401)
Q Consensus 320 ~~~~~~~~~~e~~~~~~~---~~~~~----~pwc~~~ 349 (401)
..++.+.|-++|.+.+.+ ++.|+ +|||+.-
T Consensus 112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~C 148 (245)
T 1a0r_P 112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGC 148 (245)
T ss_dssp CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTH
T ss_pred CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHH
Confidence 356778889999998853 55443 6899864
No 97
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=25.03 E-value=2.6e+02 Score=23.61 Aligned_cols=86 Identities=21% Similarity=0.180 Sum_probs=45.7
Q ss_pred HHHHHHhhCCCEEEEcCCCCCCHHHHHHHH-----HHhCCCEEEEeCccccCCCeEEEEEC---CCCceeeechhhHHHH
Q 015762 227 ATVEKLCEAGIRANSDFRDNYSPGWKYSHW-----EMKGVPLRIEIGPKDLANDQVRAVRR---DNGAKIDLPRGSLVER 298 (401)
Q Consensus 227 ~l~~~Lr~~Girv~iD~~~~~s~g~k~~~a-----e~~GvP~~iiiG~kE~~~~~V~v~~r---~tg~k~~v~~~el~~~ 298 (401)
++++.|.+.-+-+.+|......+..++..+ ...|+|..+++.++ |.+...-. ..+....-.+.++.+.
T Consensus 66 ~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~d----G~~v~~~ty~p~~~~~~~~~f~~~L~~ 141 (173)
T 3ira_A 66 EVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIMTPG----KKPFFAGTYIPKNTRFNQIGMLELVPR 141 (173)
T ss_dssp HHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTT----SCEEEEESSCCSSCBTTBCCHHHHHHH
T ss_pred HHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeECCC----CCceeeeeeCCCCcCCCCCCHHHHHHH
Confidence 566666654566777765432344444221 35799999999743 44443321 0111111234555666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015762 299 VKELLEEVQESLFVAAKQ 316 (401)
Q Consensus 299 i~~~l~~~~~~l~~~a~~ 316 (401)
+.+..++-...+.+.|.+
T Consensus 142 v~~~~~~~~~~~~~~~~~ 159 (173)
T 3ira_A 142 IKEIWEQQHEEVLDSAEK 159 (173)
T ss_dssp HHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666656666555554
No 98
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=24.29 E-value=84 Score=24.56 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCCCCCH-----------HHHHHHHHHhCCCEEEEeCcccc
Q 015762 204 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRDNYSP-----------GWKYSHWEMKGVPLRIEIGPKDL 272 (401)
Q Consensus 204 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~~~s~-----------g~k~~~ae~~GvP~~iiiG~kE~ 272 (401)
..+.|+|++..+ +.+.++..++.+.|++.|+...+.... ..+ +.-.......|+|=+..+
T Consensus 8 ve~sv~Plg~~~---~svs~~Va~~i~~i~~sGl~y~~~pm~-T~IEGe~devm~vv~~~~e~~~~~G~~RV~~~----- 78 (104)
T 1lxj_A 8 ADVCMVPIGTDS---ASISDFVALIEKKIRESPLKSTLHSAG-TTIEGPWDDVMGLIGEIHEYGHEKGYVRVHTD----- 78 (104)
T ss_dssp EEEEEEEESCSC---SCCHHHHHHHHHHHHTSSSEEEEETTE-EEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEE-----
T ss_pred EEEEEEeccCCC---CCHHHHHHHHHHHHHHcCCCeEeCCCc-cEEEcCHHHHHHHHHHHHHHHHHcCCCeEEEE-----
Confidence 568899998532 357788888889999999999887653 121 222333444677743321
Q ss_pred CCCeEEEEECCCCceeeechhhHHHHHHHHH
Q 015762 273 ANDQVRAVRRDNGAKIDLPRGSLVERVKELL 303 (401)
Q Consensus 273 ~~~~V~v~~r~tg~k~~v~~~el~~~i~~~l 303 (401)
+.+-.|.. ...++++-++.+.+.|
T Consensus 79 ----iKid~R~d---~~~~~~~Kv~~v~~~l 102 (104)
T 1lxj_A 79 ----IRVGTRTD---KHQTAQDKIDVVLKKI 102 (104)
T ss_dssp ----EEEECCSS---CCCCHHHHHHHHHHHH
T ss_pred ----EEEEecCC---CCCCHHHHHHHHHHHh
Confidence 23333322 2456666666666554
No 99
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=24.08 E-value=1.1e+02 Score=24.05 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=31.9
Q ss_pred CCCCCCCceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCC
Q 015762 197 LPPKVASVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 244 (401)
Q Consensus 197 lP~~iap~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~ 244 (401)
+|-.+ ..+.|+|++.+ +.+.++..++.+.|++.|+...+...
T Consensus 13 ~~~~i--v~~sv~Plg~~----~svs~~Va~~i~vi~~sGL~y~~~pm 54 (106)
T 1vk8_A 13 MPKVT--VSIKVVPAVED----GRLHEVIDRAIEKISSWGMKYEVGPS 54 (106)
T ss_dssp -CCEE--EEEEEEESSCG----GGHHHHHHHHHHHHHTTCSCEEECSS
T ss_pred CCeEE--EEEEEEeCCCC----CchHHHHHHHHHHHHHcCCCeEeCCC
Confidence 45433 56788899842 56888889999999999999988765
No 100
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=23.82 E-value=38 Score=24.79 Aligned_cols=26 Identities=15% Similarity=0.601 Sum_probs=18.0
Q ss_pred eeecCHHHHHHHhc--CCC-E---EEeecCCC
Q 015762 323 QIVKTWDEFVEALG--QRK-M---ILAPWCDE 348 (401)
Q Consensus 323 ~~~~~~~e~~~~~~--~~~-~---~~~pwc~~ 348 (401)
+.+++.++|.+.+. +++ + .-+|||+.
T Consensus 2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~ 33 (104)
T 2vim_A 2 RVLATAADLEKLINENKGRLIVVDFFAQWCGP 33 (104)
T ss_dssp EECCSHHHHHHHHHTTTTSCEEEEEECTTCHH
T ss_pred eecCCHHHHHHHHHhcCCCeEEEEEECCCCHH
Confidence 56788899998887 454 2 23688853
No 101
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=23.56 E-value=84 Score=24.31 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCC
Q 015762 204 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 244 (401)
Q Consensus 204 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~ 244 (401)
..+.|+|++..+ +.+.++..++.+.|++.|+...+...
T Consensus 4 ve~sv~Plg~~~---~svs~~Va~~i~~i~~sgl~y~~~pm 41 (99)
T 1lxn_A 4 AELTVIPLGTCS---TSLSSYVAAAVEALKKLNVRYEISGM 41 (99)
T ss_dssp EEEEEEESSCSS---SCCHHHHHHHHHHHTTSSCEEEEETT
T ss_pred EEEEEEecCCCC---CcHHHHHHHHHHHHHHcCCCeEeCCC
Confidence 467899998532 35778888889999999999988764
No 102
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.44 E-value=1.4e+02 Score=25.40 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcCCCEEEeecCCC
Q 015762 304 EEVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDE 348 (401)
Q Consensus 304 ~~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~~~~pwc~~ 348 (401)
+..|.++|+++.+.+++..+. ..+..-+.+-||-
T Consensus 113 E~~H~~~~~~~l~~l~~~~~~-----------~~~~~~~C~~CG~ 146 (170)
T 3pwf_A 113 EKIHAELYRKAKEKAEKGEDI-----------EIKKVYICPICGY 146 (170)
T ss_dssp HHHHHHHHHHHHHHHTTTCCC-----------CCSCEEECTTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCcC-----------CCCCeeEeCCCCC
Confidence 445777787777777766432 1234555777754
No 103
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=22.60 E-value=34 Score=27.82 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=22.0
Q ss_pred HHHHHcCeeeecCHHHHHHHhcC--CCEE----EeecCCC
Q 015762 315 KQRRDACIQIVKTWDEFVEALGQ--RKMI----LAPWCDE 348 (401)
Q Consensus 315 ~~~~~~~~~~~~~~~e~~~~~~~--~~~~----~~pwc~~ 348 (401)
.....+.+..+++.++|...+++ ++.+ -+|||+.
T Consensus 7 ~~~~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~ 46 (153)
T 2wz9_A 7 AEAAVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQ 46 (153)
T ss_dssp -----CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHH
T ss_pred cccccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHh
Confidence 33445778889999999998875 5533 3689963
No 104
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=22.57 E-value=1.3e+02 Score=23.76 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCC
Q 015762 204 VQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFR 244 (401)
Q Consensus 204 ~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~ 244 (401)
..+.|+|++.+ +.+.++..++.+.|++.|+...+...
T Consensus 10 ve~sv~Plg~~----~svs~~Va~~i~vl~~sGl~y~~~pm 46 (109)
T 1yqh_A 10 MSFSVVPQAKT----KDVYSVVDKAIEVVQQSGVRYEVGAM 46 (109)
T ss_dssp EEEEEEEECSS----SCHHHHHHHHHHHHHHSCSEEEECSS
T ss_pred EEEEEEeCCCC----CcHHHHHHHHHHHHHHcCCCeEecCC
Confidence 57888999832 45888889999999999999988765
No 105
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=22.57 E-value=47 Score=24.77 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=20.5
Q ss_pred cCeeeecCHHHHHHHhcC----CCEE----EeecCCC
Q 015762 320 ACIQIVKTWDEFVEALGQ----RKMI----LAPWCDE 348 (401)
Q Consensus 320 ~~~~~~~~~~e~~~~~~~----~~~~----~~pwc~~ 348 (401)
..++.++|.++|.+.+.. ++.+ -+|||+.
T Consensus 4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~ 40 (113)
T 1ti3_A 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPP 40 (113)
T ss_dssp CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHH
T ss_pred CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHH
Confidence 457788899998888853 5543 3688854
No 106
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=22.33 E-value=75 Score=21.97 Aligned_cols=36 Identities=14% Similarity=0.049 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCeeeecCHHHHHHHhcCCCE
Q 015762 305 EVQESLFVAAKQRRDACIQIVKTWDEFVEALGQRKM 340 (401)
Q Consensus 305 ~~~~~l~~~a~~~~~~~~~~~~~~~e~~~~~~~~~~ 340 (401)
...++|.+.|..|+.+--|.-..++.=.++|.++|+
T Consensus 7 ~~Re~li~~Av~FL~dp~V~~sp~~~K~~FL~sKGL 42 (54)
T 3ff5_A 7 EFREPLIATAVKFLQNSRVRQSPLATRRAFLKKKGL 42 (54)
T ss_dssp HHHHHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHhCChhhhcCCHHHHHHHHHHcCC
Confidence 467889999999999998888889888889987765
No 107
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=22.20 E-value=2.3e+02 Score=24.11 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHhhCCCEEEE-cCCCC--C----CHHHHHHHHHHhCCCEEEEeCccccCCCeEEEEECCCCceeeec
Q 015762 219 QGIFDACTATVEKLCEAGIRANS-DFRDN--Y----SPGWKYSHWEMKGVPLRIEIGPKDLANDQVRAVRRDNGAKIDLP 291 (401)
Q Consensus 219 ~~~~~~a~~l~~~Lr~~Girv~i-D~~~~--~----s~g~k~~~ae~~GvP~~iiiG~kE~~~~~V~v~~r~tg~k~~v~ 291 (401)
+-.++.|.++.+.|++.|+.|.+ -.|++ . ++..+...|+..+.-+.|-|--+-.. + ..+|.+.-+.
T Consensus 29 di~l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~~-~------~~~G~ev~~~ 101 (180)
T 3qay_A 29 QYNKSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNASN-G------QGKGSEVLYY 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECSS-S------CCCSEEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCCC-C------CCCEEEEEEE
Confidence 45688899999999999999633 22321 1 38899999999999999998755432 1 1234333332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCeeee-cCHHHHHHHhcCCCEEEeecCCChhHHHHHHH
Q 015762 292 RGSLVERVKELLEEVQESLFVAAKQRRDACIQIV-KTWDEFVEALGQRKMILAPWCDEEEVEKDVKA 357 (401)
Q Consensus 292 ~~el~~~i~~~l~~~~~~l~~~a~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~pwc~~~~~e~~ik~ 357 (401)
-.+ =+.+-+.+|++|-+. +.++=+.. .++--++..---.=+|...|....+-+..+..
T Consensus 102 ~~~----s~~lA~~i~~~l~~~----~~~rGvk~~~~~~vLr~t~~PavLvE~gFisN~~d~~~L~~ 160 (180)
T 3qay_A 102 SNK----GLEYATRICDKLGTV----FKNRGAKLDKRLYILNSSKPTAVLIESFFCDNKEDYDKAKK 160 (180)
T ss_dssp SHH----HHHHHHHHHHHHTTT----SCEEEEEECSCCHHHHSCSSEEEEEEEEETTCHHHHHHHHH
T ss_pred Cch----HHHHHHHHHHHHHHH----hccCCcccCCCeEEEcCCCCCEEEEEecccCCHHHHHHHHH
Confidence 211 112233455555332 33343332 34432321100012688889988888777765
No 108
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=22.14 E-value=17 Score=30.42 Aligned_cols=37 Identities=16% Similarity=-0.014 Sum_probs=27.3
Q ss_pred CceEEEEEcCCCCCChhhHHHHHHHHHHHHhhCCCEEEEcCCC
Q 015762 203 SVQVIVIPVPYKDADTQGIFDACTATVEKLCEAGIRANSDFRD 245 (401)
Q Consensus 203 p~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~Girv~iD~~~ 245 (401)
.++|.|---+. +-...+..|+..|+..|++|.+|.++
T Consensus 20 ~~dvFISy~~~------D~~~~~~~L~~~L~~~gi~v~~D~~~ 56 (154)
T 3h16_A 20 PHDIFISHAWE------DKADFVEALAHTLRAAGAEVWYDDFS 56 (154)
T ss_dssp SEEEEEEEEGG------GTTTTHHHHHHHHHHHTCCEECGGGE
T ss_pred CceEEEECccc------ChHHHHHHHHHHHHHCCCcEEEcHHh
Confidence 47888866542 21245778999999999999999753
Done!