Query 015763
Match_columns 401
No_of_seqs 273 out of 2457
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 09:20:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 4.5E-47 9.8E-52 338.3 29.5 257 103-366 80-337 (506)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.6E-44 3.5E-49 341.1 31.8 256 105-362 2-351 (352)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 2.9E-44 6.4E-49 346.3 32.3 252 103-362 55-309 (578)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2E-39 4.4E-44 323.7 32.7 251 108-361 2-365 (562)
5 KOG0145 RNA-binding protein EL 100.0 4.4E-40 9.4E-45 274.0 22.6 254 105-360 40-358 (360)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.1E-36 8.9E-41 292.5 30.3 242 105-361 1-352 (481)
7 TIGR01622 SF-CC1 splicing fact 100.0 6.3E-36 1.4E-40 292.1 29.8 253 103-362 86-450 (457)
8 KOG0148 Apoptosis-promoting RN 100.0 3.6E-36 7.8E-41 252.2 20.3 231 104-366 4-244 (321)
9 TIGR01642 U2AF_lg U2 snRNP aux 100.0 5.8E-35 1.3E-39 289.2 28.0 246 105-361 174-503 (509)
10 KOG0127 Nucleolar protein fibr 100.0 4E-35 8.7E-40 267.7 23.3 251 105-360 4-378 (678)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.1E-34 1.1E-38 277.9 29.5 242 106-360 96-480 (481)
12 TIGR01659 sex-lethal sex-letha 100.0 2.4E-34 5.1E-39 265.0 25.4 174 102-365 103-280 (346)
13 TIGR01645 half-pint poly-U bin 100.0 1.1E-33 2.4E-38 273.4 28.3 160 104-267 105-281 (612)
14 KOG0144 RNA-binding protein CU 100.0 3.1E-33 6.6E-38 248.8 19.1 253 106-361 34-505 (510)
15 KOG0123 Polyadenylate-binding 100.0 3.7E-29 8E-34 231.7 19.9 250 105-362 75-351 (369)
16 KOG0123 Polyadenylate-binding 100.0 1.3E-28 2.8E-33 228.0 21.5 241 108-361 3-247 (369)
17 KOG0127 Nucleolar protein fibr 100.0 6.5E-28 1.4E-32 220.8 17.4 234 106-342 117-516 (678)
18 KOG0124 Polypyrimidine tract-b 100.0 2.4E-27 5.3E-32 206.9 18.7 250 105-358 112-533 (544)
19 KOG0110 RNA-binding protein (R 99.9 5.8E-27 1.3E-31 221.4 18.0 248 105-361 384-694 (725)
20 KOG0147 Transcriptional coacti 99.9 2.6E-27 5.6E-32 218.1 13.0 255 104-366 177-534 (549)
21 TIGR01645 half-pint poly-U bin 99.9 6.6E-26 1.4E-30 219.6 20.9 172 186-361 107-285 (612)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.2E-24 2.7E-29 205.5 22.2 168 185-362 2-173 (352)
23 KOG4212 RNA-binding protein hn 99.9 1.9E-23 4.1E-28 186.7 23.3 144 105-252 43-278 (608)
24 TIGR01622 SF-CC1 splicing fact 99.9 1E-23 2.2E-28 206.1 21.5 171 185-360 88-266 (457)
25 KOG0131 Splicing factor 3b, su 99.9 2E-24 4.4E-29 171.5 12.5 170 105-363 8-180 (203)
26 KOG0148 Apoptosis-promoting RN 99.9 3.6E-24 7.9E-29 180.2 14.5 157 106-272 62-240 (321)
27 KOG0144 RNA-binding protein CU 99.9 2.9E-24 6.2E-29 191.8 13.9 173 187-366 35-212 (510)
28 KOG0145 RNA-binding protein EL 99.9 3.2E-23 7E-28 173.4 14.8 172 184-365 39-214 (360)
29 TIGR01628 PABP-1234 polyadenyl 99.9 5.3E-23 1.2E-27 205.7 18.7 168 188-363 2-170 (562)
30 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-22 2.8E-27 196.6 20.1 188 158-361 19-223 (578)
31 KOG0109 RNA-binding protein LA 99.9 2.9E-23 6.3E-28 176.5 11.0 153 108-366 4-156 (346)
32 KOG0117 Heterogeneous nuclear 99.9 6.4E-22 1.4E-26 177.7 19.6 190 154-363 40-251 (506)
33 KOG0146 RNA-binding protein ET 99.9 1.9E-22 4.2E-27 169.4 13.9 258 105-363 18-368 (371)
34 KOG4211 Splicing factor hnRNP- 99.9 7.8E-21 1.7E-25 173.3 21.4 247 102-359 6-357 (510)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3E-21 6.6E-26 191.3 19.0 169 184-362 173-377 (509)
36 KOG0110 RNA-binding protein (R 99.9 2.2E-21 4.7E-26 183.9 14.8 221 105-358 226-596 (725)
37 KOG4205 RNA-binding protein mu 99.9 7.6E-21 1.7E-25 170.0 14.0 176 105-366 5-182 (311)
38 KOG1190 Polypyrimidine tract-b 99.8 3.4E-20 7.3E-25 164.8 16.0 246 103-363 25-376 (492)
39 KOG4206 Spliceosomal protein s 99.8 3.6E-19 7.7E-24 147.7 16.9 207 106-358 9-220 (221)
40 PLN03134 glycine-rich RNA-bind 99.8 5.1E-19 1.1E-23 143.1 14.8 83 280-362 32-116 (144)
41 KOG0120 Splicing factor U2AF, 99.8 2.6E-18 5.6E-23 161.2 15.7 247 105-362 174-494 (500)
42 KOG0124 Polypyrimidine tract-b 99.8 9.9E-19 2.1E-23 153.3 10.9 169 187-359 114-289 (544)
43 KOG1548 Transcription elongati 99.8 3.5E-17 7.6E-22 143.0 20.3 204 103-361 131-353 (382)
44 KOG0105 Alternative splicing f 99.8 1.2E-16 2.6E-21 127.5 19.1 183 104-358 4-188 (241)
45 PLN03134 glycine-rich RNA-bind 99.7 3.5E-17 7.6E-22 132.4 11.1 83 104-186 32-114 (144)
46 KOG1365 RNA-binding protein Fu 99.7 1.4E-16 3.1E-21 140.7 14.3 251 103-359 57-361 (508)
47 KOG1190 Polypyrimidine tract-b 99.7 1.8E-15 4E-20 134.9 20.1 238 107-360 151-491 (492)
48 KOG1457 RNA binding protein (c 99.7 1.9E-15 4.2E-20 124.3 15.2 230 103-348 31-274 (284)
49 KOG0125 Ataxin 2-binding prote 99.7 2.7E-16 5.9E-21 136.5 10.5 95 272-366 86-180 (376)
50 KOG1456 Heterogeneous nuclear 99.7 1.1E-14 2.3E-19 128.6 20.1 247 101-363 26-366 (494)
51 KOG0147 Transcriptional coacti 99.7 3.1E-16 6.7E-21 145.3 10.0 172 187-363 180-361 (549)
52 PF00076 RRM_1: RNA recognitio 99.6 2.6E-15 5.7E-20 106.6 8.9 70 109-179 1-70 (70)
53 KOG4211 Splicing factor hnRNP- 99.6 1.6E-14 3.4E-19 132.4 15.9 165 188-361 12-183 (510)
54 PF00076 RRM_1: RNA recognitio 99.6 3.4E-15 7.3E-20 106.1 8.2 69 285-353 1-70 (70)
55 KOG0107 Alternative splicing f 99.6 1.4E-14 3.1E-19 114.9 11.7 79 282-363 10-88 (195)
56 KOG0122 Translation initiation 99.6 6.7E-15 1.4E-19 123.0 8.7 80 281-360 188-269 (270)
57 KOG0105 Alternative splicing f 99.6 2.3E-14 5.1E-19 114.5 11.1 81 280-361 4-84 (241)
58 KOG4207 Predicted splicing fac 99.6 1.1E-14 2.3E-19 118.5 9.3 82 281-362 12-95 (256)
59 PF14259 RRM_6: RNA recognitio 99.6 1.9E-14 4.2E-19 102.1 9.4 70 109-179 1-70 (70)
60 KOG0106 Alternative splicing f 99.6 1.2E-14 2.5E-19 122.4 9.2 168 108-359 3-170 (216)
61 KOG0122 Translation initiation 99.6 1.8E-14 3.9E-19 120.5 9.4 82 105-186 188-269 (270)
62 KOG0149 Predicted RNA-binding 99.5 8.9E-15 1.9E-19 121.9 7.0 78 106-184 12-89 (247)
63 TIGR01659 sex-lethal sex-letha 99.5 2.4E-14 5.2E-19 132.6 10.2 81 280-360 105-187 (346)
64 PLN03120 nucleic acid binding 99.5 3.9E-14 8.4E-19 122.5 10.6 77 282-360 4-80 (260)
65 KOG0121 Nuclear cap-binding pr 99.5 2.3E-14 4.9E-19 107.7 7.9 81 280-360 34-116 (153)
66 KOG0113 U1 small nuclear ribon 99.5 9E-14 2E-18 119.5 11.8 83 280-362 99-183 (335)
67 PF14259 RRM_6: RNA recognitio 99.5 3.7E-14 8E-19 100.6 8.0 69 285-353 1-70 (70)
68 PLN03120 nucleic acid binding 99.5 7.2E-14 1.6E-18 120.8 10.0 76 106-185 4-79 (260)
69 COG0724 RNA-binding proteins ( 99.5 2.2E-13 4.9E-18 124.4 13.5 167 106-340 115-285 (306)
70 KOG1456 Heterogeneous nuclear 99.5 8.8E-12 1.9E-16 110.4 22.4 236 111-360 127-491 (494)
71 KOG0114 Predicted RNA-binding 99.5 2.5E-13 5.4E-18 98.1 9.8 81 280-361 16-96 (124)
72 KOG0126 Predicted RNA-binding 99.5 4.2E-15 9.1E-20 118.5 0.5 83 102-184 31-113 (219)
73 KOG0113 U1 small nuclear ribon 99.5 1E-13 2.2E-18 119.3 8.6 80 105-184 100-179 (335)
74 KOG0121 Nuclear cap-binding pr 99.5 1E-13 2.2E-18 104.1 7.1 81 104-184 34-114 (153)
75 KOG4212 RNA-binding protein hn 99.5 2.3E-12 5.1E-17 116.2 16.9 174 186-363 44-297 (608)
76 PLN03121 nucleic acid binding 99.5 3.2E-13 6.9E-18 114.8 10.0 78 104-185 3-80 (243)
77 PLN03213 repressor of silencin 99.5 1.9E-13 4E-18 125.0 8.7 78 105-186 9-88 (759)
78 PLN03213 repressor of silencin 99.4 3.1E-13 6.7E-18 123.6 9.3 77 281-359 9-87 (759)
79 smart00362 RRM_2 RNA recogniti 99.4 1E-12 2.2E-17 93.3 9.6 72 284-355 1-72 (72)
80 KOG0114 Predicted RNA-binding 99.4 7.9E-13 1.7E-17 95.6 8.7 80 104-186 16-95 (124)
81 KOG0125 Ataxin 2-binding prote 99.4 3.2E-13 6.9E-18 117.6 8.0 79 105-185 95-173 (376)
82 smart00362 RRM_2 RNA recogniti 99.4 9.6E-13 2.1E-17 93.5 9.0 72 108-181 1-72 (72)
83 PLN03121 nucleic acid binding 99.4 1E-12 2.3E-17 111.7 10.4 78 281-360 4-81 (243)
84 KOG0149 Predicted RNA-binding 99.4 8.7E-13 1.9E-17 110.1 9.5 83 282-365 12-96 (247)
85 KOG0128 RNA-binding protein SA 99.4 5.1E-14 1.1E-18 136.8 1.5 235 104-366 569-821 (881)
86 KOG4207 Predicted splicing fac 99.4 4.1E-13 8.8E-18 109.5 6.3 84 103-186 10-93 (256)
87 KOG0107 Alternative splicing f 99.4 7.7E-13 1.7E-17 105.2 7.4 76 105-185 9-84 (195)
88 PF13893 RRM_5: RNA recognitio 99.4 2.2E-12 4.8E-17 86.9 8.3 56 299-357 1-56 (56)
89 smart00360 RRM RNA recognition 99.4 1.8E-12 3.8E-17 91.7 8.2 71 111-181 1-71 (71)
90 cd00590 RRM RRM (RNA recogniti 99.4 4.9E-12 1.1E-16 90.3 9.9 73 284-356 1-74 (74)
91 KOG0130 RNA-binding protein RB 99.4 9.4E-13 2E-17 99.9 6.2 80 105-184 71-150 (170)
92 KOG0130 RNA-binding protein RB 99.4 1.8E-12 3.9E-17 98.4 7.4 83 280-362 70-154 (170)
93 cd00590 RRM RRM (RNA recogniti 99.4 7.6E-12 1.7E-16 89.3 9.8 74 108-182 1-74 (74)
94 KOG0111 Cyclophilin-type pepti 99.3 1.1E-12 2.4E-17 107.9 5.3 86 280-365 8-95 (298)
95 smart00360 RRM RNA recognition 99.3 5.8E-12 1.3E-16 89.0 8.3 69 287-355 1-71 (71)
96 KOG0111 Cyclophilin-type pepti 99.3 1.9E-12 4.2E-17 106.5 5.9 84 104-187 8-91 (298)
97 KOG0131 Splicing factor 3b, su 99.3 6.1E-12 1.3E-16 100.8 7.8 79 280-358 7-87 (203)
98 KOG0126 Predicted RNA-binding 99.3 3.9E-13 8.4E-18 107.4 -0.6 78 282-359 35-114 (219)
99 KOG0129 Predicted RNA-binding 99.3 8.1E-11 1.8E-15 109.1 14.5 170 102-341 255-432 (520)
100 KOG0116 RasGAP SH3 binding pro 99.3 2.3E-11 5E-16 113.5 11.0 82 283-365 289-372 (419)
101 KOG0108 mRNA cleavage and poly 99.3 1.1E-11 2.3E-16 116.5 8.3 80 107-186 19-98 (435)
102 KOG0108 mRNA cleavage and poly 99.3 2.1E-11 4.5E-16 114.5 9.1 81 283-363 19-101 (435)
103 smart00361 RRM_1 RNA recogniti 99.2 4.3E-11 9.3E-16 84.5 7.5 60 296-355 2-70 (70)
104 smart00361 RRM_1 RNA recogniti 99.2 5.3E-11 1.2E-15 84.0 7.8 62 120-181 2-70 (70)
105 COG0724 RNA-binding proteins ( 99.2 6.8E-11 1.5E-15 107.9 10.2 78 282-359 115-194 (306)
106 PF13893 RRM_5: RNA recognitio 99.2 8E-11 1.7E-15 79.2 7.6 56 123-183 1-56 (56)
107 KOG4210 Nuclear localization s 99.2 7.9E-11 1.7E-15 105.8 8.2 176 105-361 87-265 (285)
108 KOG4660 Protein Mei2, essentia 99.2 1.6E-10 3.5E-15 108.1 10.1 72 103-179 72-143 (549)
109 KOG4208 Nucleolar RNA-binding 99.1 2.5E-10 5.3E-15 93.8 8.3 86 101-186 44-130 (214)
110 KOG4307 RNA binding protein RB 99.1 9E-10 1.9E-14 105.1 12.1 166 189-360 314-514 (944)
111 KOG0146 RNA-binding protein ET 99.1 1.1E-10 2.3E-15 99.1 5.2 86 102-187 281-366 (371)
112 KOG4206 Spliceosomal protein s 99.1 3.8E-10 8.2E-15 94.3 8.1 80 282-362 9-92 (221)
113 KOG0109 RNA-binding protein LA 99.1 3E-10 6.5E-15 97.7 7.2 74 283-362 3-76 (346)
114 KOG0415 Predicted peptidyl pro 99.0 4.3E-10 9.4E-15 99.2 5.9 83 280-362 237-321 (479)
115 KOG0415 Predicted peptidyl pro 99.0 5.2E-10 1.1E-14 98.7 6.3 85 102-186 235-319 (479)
116 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.1E-09 2.3E-14 102.3 8.7 83 103-185 402-484 (940)
117 KOG4307 RNA binding protein RB 99.0 1E-08 2.2E-13 98.1 14.7 74 283-356 868-943 (944)
118 KOG0120 Splicing factor U2AF, 99.0 3.1E-09 6.7E-14 100.6 11.0 162 104-268 287-490 (500)
119 KOG1457 RNA binding protein (c 99.0 7.8E-09 1.7E-13 85.8 11.7 86 280-365 32-123 (284)
120 KOG4454 RNA binding protein (R 99.0 2.2E-10 4.7E-15 94.6 2.5 147 101-352 4-155 (267)
121 KOG0153 Predicted RNA-binding 98.9 4.4E-09 9.5E-14 92.9 9.7 75 281-359 227-302 (377)
122 KOG0132 RNA polymerase II C-te 98.9 2.3E-09 5E-14 103.8 8.4 79 282-364 421-499 (894)
123 KOG0112 Large RNA-binding prot 98.9 2.7E-09 5.8E-14 105.0 8.0 165 102-363 368-534 (975)
124 KOG1365 RNA-binding protein Fu 98.9 3E-09 6.5E-14 94.9 6.8 144 106-253 161-347 (508)
125 PF04059 RRM_2: RNA recognitio 98.9 1.4E-08 3.1E-13 75.0 8.7 80 283-362 2-89 (97)
126 KOG4208 Nucleolar RNA-binding 98.9 8.6E-09 1.9E-13 84.8 8.1 81 280-360 47-130 (214)
127 KOG0533 RRM motif-containing p 98.9 3.7E-08 8.1E-13 85.3 12.0 82 282-363 83-165 (243)
128 KOG0132 RNA polymerase II C-te 98.9 6E-09 1.3E-13 101.0 7.7 77 104-186 419-495 (894)
129 KOG0128 RNA-binding protein SA 98.8 3.5E-10 7.7E-15 110.6 -0.9 137 105-255 666-802 (881)
130 KOG4661 Hsp27-ERE-TATA-binding 98.8 1.2E-08 2.6E-13 95.5 9.1 80 280-359 403-484 (940)
131 KOG0153 Predicted RNA-binding 98.8 8.9E-09 1.9E-13 91.0 7.8 80 100-185 222-302 (377)
132 KOG4205 RNA-binding protein mu 98.8 1.4E-08 3.1E-13 91.5 8.2 83 105-188 96-178 (311)
133 KOG4676 Splicing factor, argin 98.8 1.2E-09 2.7E-14 97.6 1.3 212 107-359 8-225 (479)
134 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.3E-12 70.5 9.3 79 106-184 1-85 (97)
135 KOG0226 RNA-binding proteins [ 98.7 1.6E-08 3.4E-13 85.7 5.4 173 104-361 94-271 (290)
136 PF11608 Limkain-b1: Limkain b 98.6 1.9E-07 4.2E-12 65.5 7.9 72 283-362 3-79 (90)
137 KOG1548 Transcription elongati 98.6 1.1E-07 2.3E-12 84.3 8.0 81 282-362 134-223 (382)
138 KOG4209 Splicing factor RNPS1, 98.6 5.8E-08 1.3E-12 84.4 6.3 81 104-185 99-179 (231)
139 KOG0116 RasGAP SH3 binding pro 98.6 7.5E-08 1.6E-12 90.3 6.9 78 105-183 287-364 (419)
140 KOG0106 Alternative splicing f 98.6 7.1E-08 1.5E-12 81.7 6.0 76 283-364 2-77 (216)
141 KOG0533 RRM motif-containing p 98.6 1.6E-07 3.4E-12 81.4 8.3 82 104-186 81-162 (243)
142 KOG2193 IGF-II mRNA-binding pr 98.6 9.9E-09 2.2E-13 92.8 0.6 156 108-362 3-159 (584)
143 KOG4660 Protein Mei2, essentia 98.6 8.3E-08 1.8E-12 90.3 6.5 71 280-353 73-143 (549)
144 KOG4209 Splicing factor RNPS1, 98.6 1.5E-07 3.2E-12 81.9 7.6 80 280-360 99-180 (231)
145 KOG4454 RNA binding protein (R 98.5 9.7E-08 2.1E-12 79.2 5.0 80 281-360 8-87 (267)
146 PF11608 Limkain-b1: Limkain b 98.5 8.3E-07 1.8E-11 62.3 7.3 70 107-186 3-77 (90)
147 KOG0226 RNA-binding proteins [ 98.4 2E-07 4.2E-12 79.2 4.1 84 102-185 186-269 (290)
148 KOG3152 TBP-binding protein, a 98.4 1.7E-07 3.6E-12 79.8 3.2 73 105-177 73-157 (278)
149 KOG1995 Conserved Zn-finger pr 98.4 1.2E-06 2.6E-11 78.5 7.6 82 280-361 64-155 (351)
150 PF08777 RRM_3: RNA binding mo 98.3 2.3E-06 5E-11 65.0 6.0 71 283-357 2-77 (105)
151 KOG0151 Predicted splicing reg 98.2 2.1E-06 4.6E-11 82.9 6.4 82 280-361 172-258 (877)
152 KOG0151 Predicted splicing reg 98.2 3.8E-06 8.2E-11 81.2 6.8 82 103-184 171-255 (877)
153 PF08777 RRM_3: RNA binding mo 98.1 1.2E-05 2.6E-10 61.1 6.6 60 106-171 1-60 (105)
154 COG5175 MOT2 Transcriptional r 98.0 1.6E-05 3.5E-10 70.3 6.4 90 105-194 113-212 (480)
155 KOG1995 Conserved Zn-finger pr 97.9 1.3E-05 2.8E-10 72.0 4.4 84 104-187 64-155 (351)
156 KOG3152 TBP-binding protein, a 97.8 1.1E-05 2.4E-10 68.9 2.9 70 282-351 74-157 (278)
157 KOG2314 Translation initiation 97.8 6.6E-05 1.4E-09 71.1 8.2 75 283-357 59-141 (698)
158 COG5175 MOT2 Transcriptional r 97.8 5E-05 1.1E-09 67.3 6.7 79 281-359 113-202 (480)
159 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00013 2.8E-09 54.5 7.3 76 282-359 6-91 (100)
160 KOG4210 Nuclear localization s 97.7 2.4E-05 5.1E-10 70.7 3.0 80 106-186 184-264 (285)
161 KOG4849 mRNA cleavage factor I 97.7 6.3E-05 1.4E-09 67.0 5.3 79 105-183 79-159 (498)
162 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3E-09 47.7 5.7 52 283-339 2-53 (53)
163 KOG1855 Predicted RNA-binding 97.6 0.00024 5.3E-09 65.2 8.0 68 280-347 229-311 (484)
164 KOG1996 mRNA splicing factor [ 97.5 0.00026 5.6E-09 61.8 6.9 78 283-360 282-367 (378)
165 KOG2416 Acinus (induces apopto 97.5 0.00012 2.7E-09 69.7 5.3 79 278-360 440-522 (718)
166 PF08952 DUF1866: Domain of un 97.5 0.00069 1.5E-08 53.7 8.6 74 280-360 25-107 (146)
167 KOG4676 Splicing factor, argin 97.5 0.00026 5.6E-09 64.2 6.5 77 283-360 8-89 (479)
168 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00027 5.8E-09 46.3 4.9 52 107-165 2-53 (53)
169 KOG2202 U2 snRNP splicing fact 97.4 8.5E-05 1.8E-09 63.8 2.5 64 297-360 83-148 (260)
170 KOG4849 mRNA cleavage factor I 97.4 0.0007 1.5E-08 60.5 7.4 74 282-355 80-157 (498)
171 KOG0129 Predicted RNA-binding 97.3 0.00087 1.9E-08 63.3 7.9 76 105-188 369-445 (520)
172 KOG2314 Translation initiation 97.3 0.0012 2.7E-08 62.8 8.3 78 104-182 56-140 (698)
173 KOG1855 Predicted RNA-binding 97.2 0.00036 7.8E-09 64.1 3.7 68 105-172 230-310 (484)
174 KOG2416 Acinus (induces apopto 97.1 0.00087 1.9E-08 64.1 5.7 76 105-186 443-522 (718)
175 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0026 5.7E-08 47.6 6.9 78 105-184 5-90 (100)
176 KOG0115 RNA-binding protein p5 97.0 0.0038 8.2E-08 53.8 8.5 91 255-358 17-112 (275)
177 KOG0115 RNA-binding protein p5 97.0 0.0019 4.2E-08 55.5 6.6 91 160-254 6-96 (275)
178 PF08952 DUF1866: Domain of un 96.9 0.0035 7.7E-08 49.8 6.7 78 99-185 20-106 (146)
179 PF08675 RNA_bind: RNA binding 96.6 0.012 2.5E-07 41.8 6.5 56 106-170 9-64 (87)
180 PF15023 DUF4523: Protein of u 96.5 0.015 3.2E-07 45.6 7.2 73 280-358 84-160 (166)
181 KOG2202 U2 snRNP splicing fact 96.4 0.0015 3.3E-08 56.2 1.8 62 122-184 84-146 (260)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0044 9.6E-08 51.9 3.3 70 105-174 6-81 (176)
183 PF10446 DUF2457: Protein of u 96.2 0.0032 6.9E-08 58.7 2.6 11 147-157 192-202 (458)
184 PF07576 BRAP2: BRCA1-associat 96.1 0.053 1.1E-06 41.4 8.6 67 283-349 14-81 (110)
185 PF10309 DUF2414: Protein of u 96.0 0.047 1E-06 36.7 6.8 54 283-342 6-62 (62)
186 KOG0112 Large RNA-binding prot 96.0 0.0027 5.8E-08 63.9 1.2 79 280-358 370-449 (975)
187 KOG2318 Uncharacterized conser 95.9 0.049 1.1E-06 52.5 8.9 77 103-179 171-299 (650)
188 PF10309 DUF2414: Protein of u 95.7 0.056 1.2E-06 36.3 6.3 53 108-168 7-62 (62)
189 KOG2135 Proteins containing th 95.7 0.0075 1.6E-07 56.5 2.8 77 280-361 370-447 (526)
190 KOG4285 Mitotic phosphoprotein 95.6 0.052 1.1E-06 48.0 7.4 72 283-360 198-270 (350)
191 PF04847 Calcipressin: Calcipr 95.6 0.051 1.1E-06 45.7 7.0 64 295-362 8-73 (184)
192 PF08675 RNA_bind: RNA binding 95.5 0.058 1.3E-06 38.3 5.9 54 284-343 10-63 (87)
193 KOG0804 Cytoplasmic Zn-finger 95.4 0.056 1.2E-06 50.6 7.3 68 282-349 74-142 (493)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 95.3 0.02 4.4E-07 47.9 4.0 82 281-362 6-100 (176)
195 KOG2193 IGF-II mRNA-binding pr 95.3 0.016 3.5E-07 53.5 3.4 77 283-365 2-81 (584)
196 KOG1996 mRNA splicing factor [ 95.3 0.05 1.1E-06 47.9 6.2 62 121-182 301-363 (378)
197 KOG2135 Proteins containing th 95.3 0.01 2.2E-07 55.6 2.2 77 104-187 370-447 (526)
198 PF15023 DUF4523: Protein of u 95.3 0.1 2.2E-06 41.0 7.2 74 103-184 83-160 (166)
199 KOG2591 c-Mpl binding protein, 95.2 0.049 1.1E-06 52.2 6.2 71 280-355 173-247 (684)
200 PF07576 BRAP2: BRCA1-associat 94.7 0.28 6.1E-06 37.5 8.3 66 107-174 13-80 (110)
201 KOG2068 MOT2 transcription fac 94.5 0.013 2.8E-07 52.8 0.7 77 283-359 78-162 (327)
202 KOG2068 MOT2 transcription fac 94.3 0.024 5.1E-07 51.2 1.8 81 106-186 77-163 (327)
203 KOG2591 c-Mpl binding protein, 94.1 0.087 1.9E-06 50.6 5.2 71 105-182 174-248 (684)
204 PF04931 DNA_pol_phi: DNA poly 93.6 0.046 1E-06 57.3 2.8 7 123-129 741-747 (784)
205 KOG2253 U1 snRNP complex, subu 93.6 0.062 1.3E-06 52.7 3.4 71 280-357 38-108 (668)
206 PF03880 DbpA: DbpA RNA bindin 93.6 0.37 8.1E-06 33.9 6.6 59 292-357 11-74 (74)
207 PF10567 Nab6_mRNP_bdg: RNA-re 93.3 5.5 0.00012 35.7 14.5 173 187-360 16-232 (309)
208 KOG1999 RNA polymerase II tran 93.3 0.18 3.9E-06 51.9 6.1 28 147-174 209-236 (1024)
209 KOG4574 RNA-binding protein (c 93.2 0.081 1.8E-06 53.3 3.5 75 286-364 302-378 (1007)
210 PF03880 DbpA: DbpA RNA bindin 93.1 0.57 1.2E-05 33.0 6.8 58 117-183 12-74 (74)
211 KOG4285 Mitotic phosphoprotein 93.0 0.28 6.1E-06 43.6 6.2 71 106-184 197-268 (350)
212 PF11767 SET_assoc: Histone ly 92.9 0.75 1.6E-05 31.5 6.8 56 292-354 10-65 (66)
213 KOG0804 Cytoplasmic Zn-finger 92.7 0.42 9.1E-06 45.0 7.0 69 105-175 73-142 (493)
214 PF04147 Nop14: Nop14-like fam 92.5 0.25 5.3E-06 52.1 6.2 14 118-131 426-439 (840)
215 PF04847 Calcipressin: Calcipr 92.3 0.31 6.8E-06 41.0 5.3 59 120-184 9-69 (184)
216 PRK11634 ATP-dependent RNA hel 91.8 1.6 3.4E-05 44.7 10.8 68 286-360 489-563 (629)
217 KOG2318 Uncharacterized conser 89.5 1.9 4.1E-05 42.1 8.2 81 280-360 172-308 (650)
218 KOG4574 RNA-binding protein (c 88.8 0.28 6E-06 49.7 2.3 71 109-185 301-373 (1007)
219 KOG2891 Surface glycoprotein [ 88.7 0.77 1.7E-05 40.3 4.7 128 232-359 77-267 (445)
220 PF11767 SET_assoc: Histone ly 88.0 2.6 5.7E-05 28.8 6.0 55 117-180 11-65 (66)
221 KOG2253 U1 snRNP complex, subu 87.8 0.35 7.5E-06 47.7 2.3 70 104-182 38-107 (668)
222 PF07292 NID: Nmi/IFP 35 domai 87.7 1.5 3.3E-05 31.9 5.0 70 233-303 1-73 (88)
223 PF04147 Nop14: Nop14-like fam 87.2 0.83 1.8E-05 48.3 4.8 14 349-362 742-755 (840)
224 KOG4483 Uncharacterized conser 86.1 0.47 1E-05 43.8 2.0 56 105-167 390-446 (528)
225 PF14111 DUF4283: Domain of un 85.9 2.3 4.9E-05 34.6 5.9 120 198-327 29-150 (153)
226 PF05285 SDA1: SDA1; InterPro 85.2 1.2 2.6E-05 41.4 4.3 8 118-125 190-197 (324)
227 KOG4019 Calcineurin-mediated s 84.0 2.8 6E-05 34.7 5.3 78 283-364 11-94 (193)
228 KOG2038 CAATT-binding transcri 83.2 2.1 4.5E-05 43.4 5.1 19 109-127 958-976 (988)
229 PF07292 NID: Nmi/IFP 35 domai 82.5 2 4.2E-05 31.3 3.5 55 151-206 1-72 (88)
230 PF10567 Nab6_mRNP_bdg: RNA-re 80.9 3.7 8E-05 36.7 5.3 81 280-360 13-108 (309)
231 PF03468 XS: XS domain; Inter 79.6 1.6 3.4E-05 33.8 2.4 57 283-340 9-75 (116)
232 KOG2891 Surface glycoprotein [ 75.8 1 2.2E-05 39.6 0.3 67 107-173 150-247 (445)
233 PRK14548 50S ribosomal protein 74.9 12 0.00025 27.1 5.5 58 284-342 22-81 (84)
234 TIGR03636 L23_arch archaeal ri 74.7 13 0.00028 26.4 5.6 58 284-342 15-74 (77)
235 KOG2141 Protein involved in hi 73.4 3.3 7.2E-05 41.7 3.3 28 323-350 622-649 (822)
236 PF02724 CDC45: CDC45-like pro 71.6 3 6.6E-05 42.5 2.7 21 232-252 393-413 (622)
237 COG4547 CobT Cobalamin biosynt 71.4 9.4 0.0002 36.5 5.5 16 107-122 317-332 (620)
238 KOG4019 Calcineurin-mediated s 70.2 4.5 9.7E-05 33.5 2.8 77 106-188 10-92 (193)
239 KOG4410 5-formyltetrahydrofola 69.4 11 0.00023 33.6 5.1 48 105-158 329-377 (396)
240 KOG2141 Protein involved in hi 69.0 5.6 0.00012 40.1 3.7 10 202-211 463-472 (822)
241 PF02724 CDC45: CDC45-like pro 67.5 4.3 9.3E-05 41.4 2.7 16 237-252 395-410 (622)
242 PF07530 PRE_C2HC: Associated 67.2 11 0.00023 26.1 3.8 63 121-186 2-65 (68)
243 KOG1999 RNA polymerase II tran 61.9 7.2 0.00016 40.8 3.1 17 289-305 446-462 (1024)
244 PF02714 DUF221: Domain of unk 61.6 16 0.00036 33.8 5.3 56 151-208 1-56 (325)
245 smart00596 PRE_C2HC PRE_C2HC d 59.2 16 0.00035 25.1 3.4 62 121-185 2-64 (69)
246 PF05918 API5: Apoptosis inhib 58.9 3.1 6.8E-05 41.3 0.0 7 395-401 550-556 (556)
247 COG5593 Nucleic-acid-binding p 58.8 7.2 0.00016 37.9 2.3 20 109-128 801-820 (821)
248 KOG2773 Apoptosis antagonizing 57.9 6.4 0.00014 37.5 1.8 17 283-299 382-398 (483)
249 KOG2295 C2H2 Zn-finger protein 57.9 2.2 4.7E-05 41.5 -1.2 73 105-177 230-302 (648)
250 KOG1295 Nonsense-mediated deca 57.4 14 0.0003 34.5 3.8 65 283-347 8-77 (376)
251 KOG4213 RNA-binding protein La 56.7 14 0.0003 30.6 3.3 58 106-167 111-169 (205)
252 COG4907 Predicted membrane pro 56.0 26 0.00055 33.7 5.3 12 333-344 526-537 (595)
253 TIGR01651 CobT cobaltochelatas 55.7 21 0.00045 35.7 5.0 16 106-121 295-310 (600)
254 KOG2295 C2H2 Zn-finger protein 54.8 3.2 7E-05 40.3 -0.6 76 280-355 229-306 (648)
255 PF03468 XS: XS domain; Inter 54.0 17 0.00037 28.1 3.4 54 109-165 11-74 (116)
256 KOG1295 Nonsense-mediated deca 53.9 14 0.0003 34.5 3.2 68 106-173 7-77 (376)
257 COG4547 CobT Cobalamin biosynt 53.7 23 0.00051 34.0 4.7 8 173-180 426-433 (620)
258 KOG4483 Uncharacterized conser 53.3 86 0.0019 29.6 8.1 55 282-341 391-446 (528)
259 COG4371 Predicted membrane pro 52.4 23 0.00049 31.0 4.1 7 343-349 49-55 (334)
260 PF09073 BUD22: BUD22; InterP 51.8 15 0.00033 35.7 3.4 21 332-352 409-429 (432)
261 KOG4213 RNA-binding protein La 51.3 21 0.00045 29.6 3.5 69 283-356 112-183 (205)
262 TIGR02542 B_forsyth_147 Bacter 47.5 61 0.0013 24.7 5.2 108 113-241 10-130 (145)
263 PRK14548 50S ribosomal protein 47.5 64 0.0014 23.3 5.2 56 109-167 23-80 (84)
264 cd04908 ACT_Bt0572_1 N-termina 46.9 86 0.0019 21.0 8.3 50 294-346 13-63 (66)
265 COG5638 Uncharacterized conser 46.7 54 0.0012 30.9 5.8 39 104-142 144-187 (622)
266 PF15513 DUF4651: Domain of un 46.6 39 0.00085 22.7 3.6 18 121-138 9-26 (62)
267 KOG4365 Uncharacterized conser 46.2 3.2 6.9E-05 39.1 -2.0 79 283-362 4-84 (572)
268 cd04889 ACT_PDH-BS-like C-term 46.2 77 0.0017 20.2 5.2 43 296-339 12-55 (56)
269 KOG0526 Nucleosome-binding fac 46.1 8.1 0.00018 37.6 0.5 6 113-118 534-539 (615)
270 COG5193 LHP1 La protein, small 45.0 11 0.00023 35.5 1.1 61 105-165 173-243 (438)
271 PF14026 DUF4242: Protein of u 44.6 1.1E+02 0.0024 21.6 7.3 62 285-347 3-71 (77)
272 KOG4410 5-formyltetrahydrofola 43.0 27 0.00058 31.2 3.2 48 282-333 330-378 (396)
273 KOG4364 Chromatin assembly fac 42.7 18 0.00039 36.3 2.3 13 12-24 520-532 (811)
274 KOG4008 rRNA processing protei 42.0 23 0.0005 30.7 2.6 35 280-314 38-72 (261)
275 PF02714 DUF221: Domain of unk 41.1 29 0.00062 32.2 3.4 35 325-361 1-35 (325)
276 PF14111 DUF4283: Domain of un 40.7 15 0.00033 29.6 1.3 95 117-218 28-136 (153)
277 KOG0262 RNA polymerase I, larg 40.6 26 0.00055 38.1 3.1 6 325-330 1587-1592(1640)
278 PTZ00191 60S ribosomal protein 40.5 95 0.0021 25.0 5.6 57 284-341 83-141 (145)
279 PF07530 PRE_C2HC: Associated 40.4 90 0.002 21.5 4.9 61 297-360 2-65 (68)
280 TIGR00927 2A1904 K+-dependent 39.7 21 0.00044 37.9 2.3 10 107-116 905-914 (1096)
281 KOG0699 Serine/threonine prote 39.1 22 0.00047 33.0 2.1 6 108-113 343-348 (542)
282 PF11823 DUF3343: Protein of u 39.0 46 0.00099 23.1 3.4 28 323-350 2-29 (73)
283 COG5638 Uncharacterized conser 37.8 1.2E+02 0.0027 28.7 6.7 81 280-360 144-298 (622)
284 KOG4365 Uncharacterized conser 37.2 6.7 0.00015 37.1 -1.4 77 107-184 4-80 (572)
285 COG4907 Predicted membrane pro 36.0 35 0.00076 32.8 3.0 16 333-348 523-538 (595)
286 cd04882 ACT_Bt0572_2 C-termina 35.5 1.3E+02 0.0027 19.6 5.8 49 296-345 13-62 (65)
287 KOG2187 tRNA uracil-5-methyltr 35.1 59 0.0013 32.0 4.4 76 285-363 28-104 (534)
288 KOG4008 rRNA processing protei 34.8 31 0.00066 30.0 2.2 35 101-135 35-69 (261)
289 COG1512 Beta-propeller domains 34.7 59 0.0013 29.3 4.1 31 177-207 102-133 (271)
290 PF15513 DUF4651: Domain of un 34.5 90 0.0019 21.0 3.9 21 297-317 9-29 (62)
291 TIGR00927 2A1904 K+-dependent 31.8 31 0.00066 36.7 2.1 11 148-158 931-941 (1096)
292 cd04883 ACT_AcuB C-terminal AC 31.6 1.6E+02 0.0035 19.7 8.3 52 295-347 14-68 (72)
293 KOG2147 Nucleolar protein invo 30.3 87 0.0019 32.2 4.8 36 331-367 694-729 (823)
294 PF00403 HMA: Heavy-metal-asso 30.0 1.6E+02 0.0035 19.2 6.1 54 284-341 1-58 (62)
295 KOG4264 Nucleo-cytoplasmic pro 29.3 56 0.0012 32.0 3.1 18 150-167 211-228 (694)
296 KOG1432 Predicted DNA repair e 28.1 32 0.00069 31.9 1.3 11 391-401 329-339 (379)
297 PF12782 Innate_immun: Inverte 28.1 1.2E+02 0.0026 25.8 4.6 7 335-341 13-19 (311)
298 PRK10629 EnvZ/OmpR regulon mod 27.1 3.1E+02 0.0068 21.5 8.0 70 283-358 36-109 (127)
299 KOG1060 Vesicle coat complex A 26.9 1.2E+02 0.0025 31.8 5.0 8 151-158 772-779 (968)
300 KOG0156 Cytochrome P450 CYP2 s 25.8 1.5E+02 0.0032 29.5 5.7 59 286-352 36-97 (489)
301 COG3254 Uncharacterized conser 25.5 1.9E+02 0.0042 21.7 4.8 41 298-339 28-68 (105)
302 PF11823 DUF3343: Protein of u 24.9 2.4E+02 0.0051 19.4 5.8 24 150-173 3-26 (73)
303 PF05764 YL1: YL1 nuclear prot 24.8 61 0.0013 28.7 2.5 9 292-300 183-191 (240)
304 KOG3003 Molecular chaperone of 23.8 1.7E+02 0.0036 25.6 4.8 53 293-357 161-227 (236)
305 KOG0650 WD40 repeat nucleolar 23.6 1.6E+02 0.0035 29.6 5.2 12 107-118 119-130 (733)
306 PHA03169 hypothetical protein; 22.9 3.1E+02 0.0068 25.8 6.5 9 203-211 303-311 (413)
307 PF03896 TRAP_alpha: Transloco 22.4 59 0.0013 29.6 2.0 17 283-299 192-208 (285)
308 KOG1924 RhoA GTPase effector D 22.3 1.5E+02 0.0034 30.8 4.9 16 154-169 205-220 (1102)
309 KOG3130 Uncharacterized conser 22.1 65 0.0014 30.4 2.1 16 112-127 356-371 (514)
310 COG5193 LHP1 La protein, small 22.0 40 0.00087 31.8 0.8 58 283-340 175-244 (438)
311 KOG1924 RhoA GTPase effector D 21.9 1.3E+02 0.0029 31.3 4.4 14 118-131 83-96 (1102)
312 PF08734 GYD: GYD domain; Int 21.8 3.2E+02 0.007 19.9 6.1 46 296-343 22-68 (91)
313 PHA03169 hypothetical protein; 21.8 6.9E+02 0.015 23.7 9.8 9 123-131 303-311 (413)
314 KOG3130 Uncharacterized conser 21.3 1.2E+02 0.0026 28.7 3.7 7 151-157 370-376 (514)
315 KOG3973 Uncharacterized conser 20.8 1.2E+02 0.0027 28.0 3.6 13 189-201 152-164 (465)
316 PF08206 OB_RNB: Ribonuclease 20.8 33 0.00072 22.6 0.0 37 322-359 8-45 (58)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.5e-47 Score=338.29 Aligned_cols=257 Identities=42% Similarity=0.757 Sum_probs=246.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc-CCeEEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL-KGKTIRCS 181 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~-~g~~l~v~ 181 (401)
++.++-|||+.||.++.+++|.-+|.+.|+|-.+++++++.+|.+||||||.|.+++.|+.||+.||+..| .|+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999987 69999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
.+..+++|||+|+|+++++++|.+.++++++.|..+.+...|....++||||||.|.+..+|..|.++|....+.+.+..
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
++|.|+.|...+... .....+.|||+||+.++|++.|+.+|++||.|.+|+.+++ ||||.|.+.++|.+|++.
T Consensus 240 ~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred ceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEeecchHHHHHHHHH
Confidence 999999999888776 3367899999999999999999999999999999999865 899999999999999999
Q ss_pred hcCCeeCCeEEEEEeccCCCcCCCC
Q 015763 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366 (401)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~~~~~~~ 366 (401)
+||..|+|..|.|.+|++...++..
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred hcCceecCceEEEEecCChhhhccc
Confidence 9999999999999999998877665
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.6e-44 Score=341.12 Aligned_cols=256 Identities=22% Similarity=0.411 Sum_probs=223.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+.+++++|+++|++||+|..|++++++.+|+++|||||+|.+.++|.+||..|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccC
Q 015763 185 T------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (401)
Q Consensus 185 ~------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 258 (401)
+ ..+|||+|||..+++++|+.+|.++|. +..+.++.+ ...+.++|||||.|.+.++|..|+..|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4 357999999999999999999999998 888888877 44678899999999999999999999988766555
Q ss_pred CCCCeeeecCCCCCCC----------------------------------------------------------------
Q 015763 259 GNTPTISWADPKSTPD---------------------------------------------------------------- 274 (401)
Q Consensus 259 ~~~~~v~~~~~~~~~~---------------------------------------------------------------- 274 (401)
...+.+.++.......
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 5666666653222000
Q ss_pred ----------------------CcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeC
Q 015763 275 ----------------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYA 330 (401)
Q Consensus 275 ----------------------~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~ 330 (401)
.+.....+.+|||+|||+.+++++|+++|++||.|.+|+|+++..+. ||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 00001113369999999999999999999999999999999987444 999999999
Q ss_pred CHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 331 ~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
+.++|.+|+..|||..|+||+|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999988653
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2.9e-44 Score=346.32 Aligned_cols=252 Identities=35% Similarity=0.651 Sum_probs=226.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC-CeEEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCS 181 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 181 (401)
+...++|||+|||+++++++|+.+|++||.|..|+|+++ .+|+++|||||+|.+.++|.+||+.||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345789999999999999999999999999999999999 78999999999999999999999999999885 8999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
.+..+++|||+|||..+++++|.+.|..++..+..+.+...+...+++++||||.|.+..+|..|+..|....+.+.++.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 99999999999999999999999999999876766666555556678899999999999999999999988788899999
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhc--CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHH
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~--G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~ 339 (401)
+.|.|+.+........ ....++|||+|||..+++++|+++|++| |.|.+|.+++ +||||+|.+.++|.+|+
T Consensus 214 I~VdwA~p~~~~d~~~-~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDV-MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccc-cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHHH
Confidence 9999998876443222 2445799999999999999999999999 9999998763 59999999999999999
Q ss_pred HhhcCCeeCCeEEEEEeccCCCc
Q 015763 340 KDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 340 ~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
..||+..|.|+.|+|.||++...
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999988543
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2e-39 Score=323.67 Aligned_cols=251 Identities=29% Similarity=0.518 Sum_probs=218.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc-
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK- 186 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~- 186 (401)
+|||+|||+++|+++|+++|++||.|.+|+++++..|++++|||||+|.+.++|.+||..|++..+.|+.|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999775310
Q ss_pred --------------------------------------------------------------------------------
Q 015763 187 -------------------------------------------------------------------------------- 186 (401)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (401)
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence
Q ss_pred -----------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 015763 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (401)
Q Consensus 187 -----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 249 (401)
++|||+|||..+++++|+++|..||. |..+.++.+. .+.++|||||.|.+.++|.+|+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~~--~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKDG--SGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEECC--CCCcccEEEEEECCHHHHHHHHHH
Confidence 13788999999999999999999998 8888888863 578899999999999999999999
Q ss_pred HhcCCcccC--CCCCeeeecCCCCCCC------------CcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEec
Q 015763 250 MLNANFKLD--GNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (401)
Q Consensus 250 l~~~~~~~~--~~~~~v~~~~~~~~~~------------~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~ 315 (401)
+++..+... +..+.+.++.+..... ........++|||+||+..+++++|+++|++||.|.+|+|.
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 987654322 7777777765543220 01112346789999999999999999999999999999999
Q ss_pred CCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 316 PGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 316 ~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
.+..+. +|||||+|.+.++|.+|+..|||..|+|++|+|.||..+.
T Consensus 319 ~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred ECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 987665 9999999999999999999999999999999999998754
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.4e-40 Score=273.98 Aligned_cols=254 Identities=23% Similarity=0.406 Sum_probs=225.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..+.|.|.-||..+|+++|+.+|...|+|.+|++++++.+|.+.||+||.|-.+++|.+|+..|||..+..+.|+|++++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccC
Q 015763 185 TK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (401)
Q Consensus 185 ~~------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 258 (401)
+. .+|||+.||+.+|..+|.++|++||. |..-++..| +.++.++|.+||.|..+..|..|++.|++..-...
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 86 47999999999999999999999998 655566666 66799999999999999999999999998776666
Q ss_pred CCCCeeeecCCCCCCC---------------------------------------------------------Ccccccc
Q 015763 259 GNTPTISWADPKSTPD---------------------------------------------------------HSAAASQ 281 (401)
Q Consensus 259 ~~~~~v~~~~~~~~~~---------------------------------------------------------~~~~~~~ 281 (401)
..++.|.++....... .+.....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 6677777764331000 0001112
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
..||||.||.++.++.-|+++|.+||.|..|+|+++-.++ ||||||.+.+.++|..|+..|||..+++|.|.|+|-..
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 5899999999999999999999999999999999999876 99999999999999999999999999999999999876
Q ss_pred C
Q 015763 360 Q 360 (401)
Q Consensus 360 ~ 360 (401)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 5
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.1e-36 Score=292.54 Aligned_cols=242 Identities=22% Similarity=0.253 Sum_probs=203.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHh--cCCccCCeEEEEEe
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIRCSL 182 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~ 182 (401)
.+++|||+|||+.+++++|+++|++||.|.+|.++++ ++||||+|.+.++|.+|++.+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3678999999999999999999999999999999853 679999999999999999864 67889999999998
Q ss_pred cccc------------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHH
Q 015763 183 SETK------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (401)
Q Consensus 183 ~~~~------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (401)
+... .+|+|.||++.++++.|+++|+.||. |..+.++++. .+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 15899999999999999999999998 8888887652 2468999999999999
Q ss_pred HHHHHHhcCCcccCCCCCeeeecCCCCCC--------------------------------C------------------
Q 015763 245 YSRQKMLNANFKLDGNTPTISWADPKSTP--------------------------------D------------------ 274 (401)
Q Consensus 245 ~a~~~l~~~~~~~~~~~~~v~~~~~~~~~--------------------------------~------------------ 274 (401)
+|+..|++..+.-.+..+.+.|+.+.... .
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 99999998876544444555444321100 0
Q ss_pred ---------------------------------------CcccccccceEEEccCCC-CCCHHHHHHHHhhcCCeeEEEe
Q 015763 275 ---------------------------------------HSAAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVM 314 (401)
Q Consensus 275 ---------------------------------------~~~~~~~~~~l~v~nlp~-~~t~e~l~~~f~~~G~i~~v~i 314 (401)
......++++|||+|||. .+++++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 000012567999999997 6999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 315 PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 315 ~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
.+++ +|||||+|.+.++|..|+..|||..|.|++|+|.+++...
T Consensus 309 ~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 8864 5899999999999999999999999999999999997654
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=6.3e-36 Score=292.06 Aligned_cols=253 Identities=25% Similarity=0.421 Sum_probs=216.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++.+|+++|.+||.|..|+++.++.+++++|||||+|.+.++|.+|| .|++..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999999999999999999999999999999 5899999999999987
Q ss_pred ccc------------------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHH
Q 015763 183 SET------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (401)
Q Consensus 183 ~~~------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (401)
+.. .++|||+|||..+++++|+++|.+||. |..+.++.++ .++.++|||||.|.+.+.|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRDP-ETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEcC-CCCccceEEEEEECCHHHHH
Confidence 532 267999999999999999999999998 9999999884 45789999999999999999
Q ss_pred HHHHHHhcCCcccCCCCCeeeecCCCCC--------------------------------------------C-------
Q 015763 245 YSRQKMLNANFKLDGNTPTISWADPKST--------------------------------------------P------- 273 (401)
Q Consensus 245 ~a~~~l~~~~~~~~~~~~~v~~~~~~~~--------------------------------------------~------- 273 (401)
.|+..|++ +.+.++.+.|.++..... +
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999987 677888888888421100 0
Q ss_pred -----------------------------C---C-cccccccceEEEccCCCCCC----------HHHHHHHHhhcCCee
Q 015763 274 -----------------------------D---H-SAAASQVKALYVKNIPDNTS----------TEKIKELFQRHGEVT 310 (401)
Q Consensus 274 -----------------------------~---~-~~~~~~~~~l~v~nlp~~~t----------~e~l~~~f~~~G~i~ 310 (401)
. . .......++|+|.||....+ .++|++.|++||.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 0 0 00113468899999964444 268999999999999
Q ss_pred EEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 311 ~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
.|.|..... .|++||+|.++++|..|++.|||+.|+|+.|.+.|.....-
T Consensus 401 ~v~v~~~~~--~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~ 450 (457)
T TIGR01622 401 HIYVDTKNS--AGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVY 450 (457)
T ss_pred EEEEeCCCC--ceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHH
Confidence 999974432 58999999999999999999999999999999999986543
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-36 Score=252.23 Aligned_cols=231 Identities=20% Similarity=0.405 Sum_probs=192.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...+||||+||...+|++-|..||.+.|+|..++++.+.. + |...+.. ..+.+....+++
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~-------v~wa~~p-------~nQsk~t~~~hf----- 63 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K-------VNWATAP-------GNQSKPTSNQHF----- 63 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c-------cccccCc-------ccCCCCccccce-----
Confidence 3568899999999999999999999999999999987621 0 0000000 111111112222
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
.+||..|...++.+.|++.|.+||+ |..+++++| ..+++++||+||.|.+..+|++|+..|++. .|.+|.++
T Consensus 64 ----hvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IR 135 (321)
T KOG0148|consen 64 ----HVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIR 135 (321)
T ss_pred ----eEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceee
Confidence 3789999999999999999999999 999999999 578999999999999999999999999875 78999999
Q ss_pred eeecCCCCCCCC----------cccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHH
Q 015763 264 ISWADPKSTPDH----------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (401)
Q Consensus 264 v~~~~~~~~~~~----------~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~ 333 (401)
.+|+..+..... ....+..++|||+||+..+++++|++.|++||.|..|+|.+++ ||+||+|.+++
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkE 211 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKE 211 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchh
Confidence 999987753221 1123457999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHhhcCCeeCCeEEEEEeccCCCcCCCC
Q 015763 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366 (401)
Q Consensus 334 ~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~~~ 366 (401)
+|.+||..+|+..|.|..|++.|-+........
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~~~~~~~ 244 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEGDDGINN 244 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccCCCCCCc
Confidence 999999999999999999999999987665443
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=5.8e-35 Score=289.21 Aligned_cols=246 Identities=22% Similarity=0.385 Sum_probs=201.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc------------CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPI------------GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~------------g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~ 172 (401)
..++|||+|||+.+|+++|+.+|.+| +.|..+.+ ++.+|||||+|.+.++|..|| .|+|..
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~~ 246 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSII 246 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCeE
Confidence 57799999999999999999999975 23444443 456899999999999999999 699999
Q ss_pred cCCeEEEEEecc-----------------------------------cccccccCCCCCCCCHHHHHHHHHhhCCceeEE
Q 015763 173 LKGKTIRCSLSE-----------------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217 (401)
Q Consensus 173 ~~g~~l~v~~~~-----------------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~ 217 (401)
|.|+.|.|.... ..++|||+|||..+++++|+++|+.||+ |..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeEE
Confidence 999999986421 1257999999999999999999999998 9999
Q ss_pred EEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCC----------------------
Q 015763 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH---------------------- 275 (401)
Q Consensus 218 ~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~---------------------- 275 (401)
.++.++ .++.++|||||.|.+...|..|+..|++. .+.++.+.|.++........
T Consensus 326 ~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
T TIGR01642 326 NLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSIL 402 (509)
T ss_pred EEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhhc
Confidence 998873 57889999999999999999999999764 56788888888743321100
Q ss_pred cccccccceEEEccCCCCC----------CHHHHHHHHhhcCCeeEEEecCCCC----CC-CCeEEEEeCCHHHHHHHHH
Q 015763 276 SAAASQVKALYVKNIPDNT----------STEKIKELFQRHGEVTKVVMPPGKS----GK-RDFGFIHYAERSSALKAVK 340 (401)
Q Consensus 276 ~~~~~~~~~l~v~nlp~~~----------t~e~l~~~f~~~G~i~~v~i~~~~~----~~-kg~afV~f~~~~~A~~A~~ 340 (401)
.....++++|+|.||.... ..++|+++|++||.|..|.|++... +. +|+|||+|.+.++|.+|+.
T Consensus 403 ~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~ 482 (509)
T TIGR01642 403 QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAME 482 (509)
T ss_pred cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHH
Confidence 0011356889999997321 2367999999999999999987532 11 6899999999999999999
Q ss_pred hhcCCeeCCeEEEEEeccCCC
Q 015763 341 DTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 341 ~l~g~~i~g~~l~v~~a~~~~ 361 (401)
.|||+.|+|+.|.|.|.....
T Consensus 483 ~lnGr~~~gr~v~~~~~~~~~ 503 (509)
T TIGR01642 483 GMNGRKFNDRVVVAAFYGEDC 503 (509)
T ss_pred HcCCCEECCeEEEEEEeCHHH
Confidence 999999999999999987643
No 10
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=267.75 Aligned_cols=251 Identities=25% Similarity=0.483 Sum_probs=219.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
.+.||||++||+.++..+|..+|+.+|+|..+.++.++.++.++||+||.|.-.++++.|++.+++..|.|+.|+|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred cc--------------------------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccE
Q 015763 185 TK--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232 (401)
Q Consensus 185 ~~--------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~ 232 (401)
.. -+|+|+|||+.+...+|+.+|+.||. |..+.|++. ..++-.||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGF 160 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGF 160 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccce
Confidence 32 36999999999999999999999998 888888864 34445599
Q ss_pred EEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCC--------------------------------------
Q 015763 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD-------------------------------------- 274 (401)
Q Consensus 233 ~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------- 274 (401)
|||+|....+|..|+..+++. .+.||++.|.|+-+...-.
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d 238 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEED 238 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccc
Confidence 999999999999999999764 7789999999986551000
Q ss_pred -----------------------------C--cc---------------cccccceEEEccCCCCCCHHHHHHHHhhcCC
Q 015763 275 -----------------------------H--SA---------------AASQVKALYVKNIPDNTSTEKIKELFQRHGE 308 (401)
Q Consensus 275 -----------------------------~--~~---------------~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~ 308 (401)
. +. ......+|||+|||+++|+++|.++|++||.
T Consensus 239 ~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~ 318 (678)
T KOG0127|consen 239 SEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE 318 (678)
T ss_pred ccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc
Confidence 0 00 0001379999999999999999999999999
Q ss_pred eeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhh-----cC-CeeCCeEEEEEeccCC
Q 015763 309 VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT-----EK-YEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 309 i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l-----~g-~~i~g~~l~v~~a~~~ 360 (401)
|.++.|+.++.+. +|.|||.|.+...|..||... .| ..|.||.|.|..|-.+
T Consensus 319 v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 319 VKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 9999999999877 999999999999999999976 24 7889999999999664
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.1e-34 Score=277.87 Aligned_cols=242 Identities=17% Similarity=0.259 Sum_probs=203.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC--eEEEEEec
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 183 (401)
-.+|||+||++.+|+++|+++|+.||.|..|.+.++.. +++|||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 35799999999999999999999999999999877542 4789999999999999999999999865 35555443
Q ss_pred c-------------------------------------------------------------------------------
Q 015763 184 E------------------------------------------------------------------------------- 184 (401)
Q Consensus 184 ~------------------------------------------------------------------------------- 184 (401)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 2
Q ss_pred ----------------------cccccccCCCCC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHH
Q 015763 185 ----------------------TKNRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (401)
Q Consensus 185 ----------------------~~~~l~v~~l~~-~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~ 241 (401)
+.++|||+|||. .++++.|+++|+.||. |..+.++++ .+|||||+|.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 123799999998 6999999999999998 999999886 3689999999999
Q ss_pred HHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCC-------------------------------cccccccceEEEccC
Q 015763 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-------------------------------SAAASQVKALYVKNI 290 (401)
Q Consensus 242 ~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------~~~~~~~~~l~v~nl 290 (401)
+|..|+..|++. .+.|+.+.|.++........ .....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999875 56789999887644311000 001134679999999
Q ss_pred CCCCCHHHHHHHHhhcCC--eeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeE------EEEEeccCC
Q 015763 291 PDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV------LEVVLAKPQ 360 (401)
Q Consensus 291 p~~~t~e~l~~~f~~~G~--i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~------l~v~~a~~~ 360 (401)
|..+++++|+++|+.||. |..|++.....+++++|||+|.+.++|..|+..||+..|.|+. |+|.|++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 8899887666555899999999999999999999999999985 999999864
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.4e-34 Score=265.03 Aligned_cols=174 Identities=25% Similarity=0.465 Sum_probs=154.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+++|+++|+++|+.||.|..|+|+++..+++++|||||+|.+.++|.+||+.|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
++.+... .
T Consensus 183 ~a~p~~~----------------------------------------~-------------------------------- 190 (346)
T TIGR01659 183 YARPGGE----------------------------------------S-------------------------------- 190 (346)
T ss_pred ccccccc----------------------------------------c--------------------------------
Confidence 7643110 0
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHH
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAV 339 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~ 339 (401)
...++|||+|||..+++++|+++|++||.|..|+|++++.+. +|||||+|.+.++|.+||
T Consensus 191 ------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 191 ------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred ------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 112479999999999999999999999999999999887543 899999999999999999
Q ss_pred HhhcCCeeCC--eEEEEEeccCCCcCCC
Q 015763 340 KDTEKYEIDG--QVLEVVLAKPQTDKKT 365 (401)
Q Consensus 340 ~~l~g~~i~g--~~l~v~~a~~~~~~~~ 365 (401)
..||+..|.| ++|+|.||......+.
T Consensus 253 ~~lng~~~~g~~~~l~V~~a~~~~~~~~ 280 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVRLAEEHGKAKA 280 (346)
T ss_pred HHhCCCccCCCceeEEEEECCccccccc
Confidence 9999999876 7999999998655443
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.1e-33 Score=273.39 Aligned_cols=160 Identities=23% Similarity=0.471 Sum_probs=143.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|.+||.|.+|+++.++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cc-----------------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHH
Q 015763 184 ET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (401)
Q Consensus 184 ~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 246 (401)
.. .++|||+|||..+++++|+++|+.||. |..+++.+++ .++.++|||||.|.+.++|..|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D~-~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEecC-CCCCcCCeEEEEECCHHHHHHH
Confidence 32 258999999999999999999999998 9999999984 4678999999999999999999
Q ss_pred HHHHhcCCcccCCCCCeeeec
Q 015763 247 RQKMLNANFKLDGNTPTISWA 267 (401)
Q Consensus 247 ~~~l~~~~~~~~~~~~~v~~~ 267 (401)
+..|++ +.+.|+.+.|.++
T Consensus 263 I~amNg--~elgGr~LrV~kA 281 (612)
T TIGR01645 263 IASMNL--FDLGGQYLRVGKC 281 (612)
T ss_pred HHHhCC--CeeCCeEEEEEec
Confidence 999975 3455555555443
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=248.82 Aligned_cols=253 Identities=28% Similarity=0.526 Sum_probs=220.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCC--eEEEEEe
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRCSL 182 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~~ 182 (401)
.-++||+.||..+++.+|+.+|++||.|.+|.+++|+.|+.++|+|||.|.+.++|.+|+.+||+.. |.| ..|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 3459999999999999999999999999999999999999999999999999999999999999865 444 5688888
Q ss_pred ccc-------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcC-C
Q 015763 183 SET-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA-N 254 (401)
Q Consensus 183 ~~~-------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~-~ 254 (401)
+.. .++|||+.|++.+++.+++++|.+||. |+.+.+.+++ .+.+||++||.|.+.+.|..|++.|++. .
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd~--~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRDP--DGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheecc--cccccceeEEEEehHHHHHHHHHhhcccee
Confidence 764 467899999999999999999999998 9999999975 6789999999999999999999999874 3
Q ss_pred cccCCCCCeeeecCCCCCCCC-----------------------------------------------------------
Q 015763 255 FKLDGNTPTISWADPKSTPDH----------------------------------------------------------- 275 (401)
Q Consensus 255 ~~~~~~~~~v~~~~~~~~~~~----------------------------------------------------------- 275 (401)
+.....++.|.|+++.+....
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 555666777788776610000
Q ss_pred ----------------------c---------------------------------------------------------
Q 015763 276 ----------------------S--------------------------------------------------------- 276 (401)
Q Consensus 276 ----------------------~--------------------------------------------------------- 276 (401)
+
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence 0
Q ss_pred --------------------------------------------------------------------ccccccceEEEc
Q 015763 277 --------------------------------------------------------------------AAASQVKALYVK 288 (401)
Q Consensus 277 --------------------------------------------------------------------~~~~~~~~l~v~ 288 (401)
...+.+..|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 000004679999
Q ss_pred cCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 289 nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
+||.+.-+.+|...|..||.|...++..++.++ |+|+||.|++..+|..||..|||+.|++++|+|.+.+.+.
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999999999999999999999998887 9999999999999999999999999999999999987653
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.7e-29 Score=231.67 Aligned_cols=250 Identities=29% Similarity=0.498 Sum_probs=216.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
+.+.|||.||++.++...|..+|+.||.|.+|++.++.. | ++|| ||+|.+.++|.+|+..+||..+.|++|.|....
T Consensus 75 d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 444499999999999999999999999999999999875 5 9999 999999999999999999999999999997654
Q ss_pred c--------------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHH
Q 015763 185 T--------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250 (401)
Q Consensus 185 ~--------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l 250 (401)
. -..+++.+++...+...|..+|..+|+ +..+.++.+ ..+.+++|+||.|.+.++|..|+..+
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l 228 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETL 228 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhc
Confidence 3 246899999999999999999999998 999999886 35669999999999999999999999
Q ss_pred hcCCcccCCCCCeeeecCCCCCC------------CCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCC
Q 015763 251 LNANFKLDGNTPTISWADPKSTP------------DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK 318 (401)
Q Consensus 251 ~~~~~~~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~ 318 (401)
++..+. +..+.+..+...... ...........|+|.||+..++.+.|+.+|+.||.|..++|..+.
T Consensus 229 ~~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 229 NGKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred cCCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 876554 555555555442111 111113456789999999999999999999999999999999988
Q ss_pred CCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 319 SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 319 ~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
.+. +||+||.|.+.++|.+|+..+|+..+.+++|.|.++..+..
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhcc
Confidence 877 99999999999999999999999999999999999984433
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-28 Score=228.00 Aligned_cols=241 Identities=25% Similarity=0.460 Sum_probs=215.1
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc-
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK- 186 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~- 186 (401)
.|||+ +++|+..|.++|+++|+|.+++++++. | +.|||||.|.++.+|.+||..+|...+.|+.|++.|+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 899999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeee
Q 015763 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (401)
Q Consensus 187 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 266 (401)
..+||.||+..++...|..+|+.||. |.++++..+... ++|| ||.|.+.+.|.+|+..+++ ..+.+..+.+..
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng--~ll~~kki~vg~ 149 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNG--MLLNGKKIYVGL 149 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcC--cccCCCeeEEee
Confidence 34899999999999999999999999 999999997543 8999 9999999999999998876 466778888776
Q ss_pred cCCCCCCCCcc--cccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhc
Q 015763 267 ADPKSTPDHSA--AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 267 ~~~~~~~~~~~--~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~ 343 (401)
........... ....-..+++.|++..++...|..+|+.+|.|..+.+..+..+. +||+||.|.++++|..|+..||
T Consensus 150 ~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 150 FERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred ccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 65554322111 23445789999999999999999999999999999999998886 9999999999999999999999
Q ss_pred CCeeCCeEEEEEeccCCC
Q 015763 344 KYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 344 g~~i~g~~l~v~~a~~~~ 361 (401)
+..+.+..+.|..+..+.
T Consensus 230 ~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 230 GKIFGDKELYVGRAQKKS 247 (369)
T ss_pred CCcCCccceeecccccch
Confidence 999999999999887733
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=6.5e-28 Score=220.76 Aligned_cols=234 Identities=23% Similarity=0.408 Sum_probs=192.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.-+|.|+||||.+...+|+.+|+.||.|..|.|.+.+. |+-.|||||+|....+|.+||+.+|+..|.||+|-|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56799999999999999999999999999999998777 55559999999999999999999999999999999999764
Q ss_pred c-------------------------------------------------------------------------------
Q 015763 186 K------------------------------------------------------------------------------- 186 (401)
Q Consensus 186 ~------------------------------------------------------------------------------- 186 (401)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 3
Q ss_pred -----------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 015763 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (401)
Q Consensus 187 -----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 249 (401)
.++||+|||+.+|++.|.+.|++||+ |.++.++.+ ..+++++|.|||.|.+...|..|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~-k~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKD-KDTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEec-cCCCCcccceEEEeccHHHHHHHHHh
Confidence 26999999999999999999999999 999999998 47899999999999999999999988
Q ss_pred Hh---cCC-cccCCCCCeeeecCCCCCC----------------------------------------------------
Q 015763 250 ML---NAN-FKLDGNTPTISWADPKSTP---------------------------------------------------- 273 (401)
Q Consensus 250 l~---~~~-~~~~~~~~~v~~~~~~~~~---------------------------------------------------- 273 (401)
.+ +.. +.+.||-+.|..+.+....
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 72 233 7888898888877554100
Q ss_pred ---CCcccccccceEEEccCCCCCCHHHHHHHHhhc-----CCee-EEEecCC-----CCCCCCeEEEEeCCHHHHHHHH
Q 015763 274 ---DHSAAASQVKALYVKNIPDNTSTEKIKELFQRH-----GEVT-KVVMPPG-----KSGKRDFGFIHYAERSSALKAV 339 (401)
Q Consensus 274 ---~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~-----G~i~-~v~i~~~-----~~~~kg~afV~f~~~~~A~~A~ 339 (401)
..+......++|.|+|||..++..+|..++... +.+. .++.+.. ++.+.||+|+.|..++.|++|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 011111225789999999999999998887542 2222 2333322 2233799999999999999999
Q ss_pred Hhh
Q 015763 340 KDT 342 (401)
Q Consensus 340 ~~l 342 (401)
+.+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 965
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=2.4e-27 Score=206.91 Aligned_cols=250 Identities=21% Similarity=0.397 Sum_probs=203.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
--++|||+.+.+.+.++.|+..|.+||+|.+|.+..++.|++++|||||+|.-++.|+.|++.||+..+.||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred c-----------------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHH
Q 015763 185 T-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (401)
Q Consensus 185 ~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 247 (401)
. -++|||..+.+..++.+|+.+|+.||+ |.++.+-+.|. ...++||+|++|.+......|+
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~pt-~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAPT-GRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccCC-CCCccceeeEEeccccchHHHh
Confidence 2 368999999999999999999999999 99999999864 4568999999999998888888
Q ss_pred HHHhcCCcccCCCCCeeeecCCCC--------------------------------------------------------
Q 015763 248 QKMLNANFKLDGNTPTISWADPKS-------------------------------------------------------- 271 (401)
Q Consensus 248 ~~l~~~~~~~~~~~~~v~~~~~~~-------------------------------------------------------- 271 (401)
..|+ -+.+.|..++|-.+....
T Consensus 270 asMN--lFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~ 347 (544)
T KOG0124|consen 270 ASMN--LFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQ 347 (544)
T ss_pred hhcc--hhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccC
Confidence 7764 244444444433221100
Q ss_pred ---------------------CCCCcc-----------------------------------------------------
Q 015763 272 ---------------------TPDHSA----------------------------------------------------- 277 (401)
Q Consensus 272 ---------------------~~~~~~----------------------------------------------------- 277 (401)
.+..+.
T Consensus 348 p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI 427 (544)
T KOG0124|consen 348 PLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSI 427 (544)
T ss_pred CCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccc
Confidence 000000
Q ss_pred --------------cccccceEEEccC--CCCCCH---HHHHHHHhhcCCeeEEEecCCCCCC------CCeEEEEeCCH
Q 015763 278 --------------AASQVKALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK------RDFGFIHYAER 332 (401)
Q Consensus 278 --------------~~~~~~~l~v~nl--p~~~t~---e~l~~~f~~~G~i~~v~i~~~~~~~------kg~afV~f~~~ 332 (401)
....++.|.++|+ |.++++ .+|.+.|.+||.|.+|.|...+.+. ---.||+|...
T Consensus 428 ~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~ 507 (544)
T KOG0124|consen 428 SGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIA 507 (544)
T ss_pred cCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechh
Confidence 0000467888888 566654 5889999999999999998877653 12379999999
Q ss_pred HHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 333 SSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 333 ~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
.++.+|..+|+|+.|+||++......
T Consensus 508 ~e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 508 SETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred hHHHHHHHhhccceecCceeehhhhh
Confidence 99999999999999999999877654
No 19
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=5.8e-27 Score=221.38 Aligned_cols=248 Identities=23% Similarity=0.364 Sum_probs=204.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..+.|+|+|||..+..+.|..+|..||.|..+.+.+. | -.|+|.|.++.+|.+|+..|..+.+....+.+.|+.
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 4578999999999999999999999999999855421 2 149999999999999999999887776666555432
Q ss_pred cc--------------------------------------------------------cccccCCCCCCCCHHHHHHHHH
Q 015763 185 TK--------------------------------------------------------NRLFIGNVPKNWTEDEFRKVIE 208 (401)
Q Consensus 185 ~~--------------------------------------------------------~~l~v~~l~~~~~~~~l~~~f~ 208 (401)
.. ++|||.||++..+.+.+...|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 10 2499999999999999999999
Q ss_pred hhCCceeEEEEee--CCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCC---CCcccccccc
Q 015763 209 DVGPGVETIELIK--DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP---DHSAAASQVK 283 (401)
Q Consensus 209 ~~g~~v~~~~~~~--~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~ 283 (401)
..|. |..+.|.. +|.....+.|||||+|.+.++|..|++.|++ ..+.|+.+.+.++...... .........+
T Consensus 538 k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqg--tvldGH~l~lk~S~~k~~~~~gK~~~~kk~~t 614 (725)
T KOG0110|consen 538 KQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQG--TVLDGHKLELKISENKPASTVGKKKSKKKKGT 614 (725)
T ss_pred hcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcC--ceecCceEEEEeccCccccccccccccccccc
Confidence 9998 77776654 3444556789999999999999999999974 5788999999888722111 1111112357
Q ss_pred eEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
.|.|+|||+..+..+|+++|..||.|..|+|+.-.... +|||||.|-++.+|..|+.+|....|-||+|.+.||+...
T Consensus 615 KIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 615 KILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred eeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 89999999999999999999999999999999884433 9999999999999999999999999999999999998743
No 20
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=2.6e-27 Score=218.06 Aligned_cols=255 Identities=25% Similarity=0.389 Sum_probs=216.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...+|||+-.|+-.+++-+|..||+.+|.|..|+++.+..+++++|.|||+|.+.+....|| .|.|+.+.|.+|.|...
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEeccc
Confidence 36778999999999999999999999999999999999999999999999999999999999 89999999999999875
Q ss_pred cc--------------------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHH
Q 015763 184 ET--------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (401)
Q Consensus 184 ~~--------------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (401)
.. -.+|||+||.+++++..++.+|++||. |..+.+.++ ..+|.++||+|++|.+.++|
T Consensus 256 Eaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHHHH
Confidence 32 134899999999999999999999998 999999998 46899999999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCeeeecCCCCC---------------------------------------------------
Q 015763 244 DYSRQKMLNANFKLDGNTPTISWADPKST--------------------------------------------------- 272 (401)
Q Consensus 244 ~~a~~~l~~~~~~~~~~~~~v~~~~~~~~--------------------------------------------------- 272 (401)
.+|+.+|++ +.+-|+.+.|....-...
T Consensus 334 r~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~ 411 (549)
T KOG0147|consen 334 RKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLL 411 (549)
T ss_pred HHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHh
Confidence 999999987 888888887664321100
Q ss_pred ---------------CCCcccc-------cccceEEEccCC--CCCCH--------HHHHHHHhhcCCeeEEEecCCCCC
Q 015763 273 ---------------PDHSAAA-------SQVKALYVKNIP--DNTST--------EKIKELFQRHGEVTKVVMPPGKSG 320 (401)
Q Consensus 273 ---------------~~~~~~~-------~~~~~l~v~nlp--~~~t~--------e~l~~~f~~~G~i~~v~i~~~~~~ 320 (401)
.....+. .++.|+.|+|+- ...|+ ++|++-|.+||+|..|.+.++..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~- 490 (549)
T KOG0147|consen 412 LAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA- 490 (549)
T ss_pred ccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-
Confidence 0011111 345677888873 23332 68889999999999999987765
Q ss_pred CCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcCCCC
Q 015763 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366 (401)
Q Consensus 321 ~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~~~ 366 (401)
|+.||.|.+.+.|..|+++|||.+|.|+.|++.|-.........
T Consensus 491 --g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~F 534 (549)
T KOG0147|consen 491 --GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKF 534 (549)
T ss_pred --ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhC
Confidence 79999999999999999999999999999999998876655443
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=6.6e-26 Score=219.57 Aligned_cols=172 Identities=23% Similarity=0.460 Sum_probs=148.7
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeee
Q 015763 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (401)
Q Consensus 186 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 265 (401)
.++|||+|||+.+++++|+++|.+||+ |..+.++++ ..+++++|||||.|.+.++|..|+..+++ ..+.|+.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D-~~TgkskGfAFVeF~s~e~A~~Ai~~lnG--~~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWD-PATGKHKGFAFVEYEVPEAAQLALEQMNG--QMLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeec-CCCCCcCCeEEEEeCcHHHHHHHHHhcCC--eEEecceeeec
Confidence 468999999999999999999999998 999999998 45788999999999999999999999865 46788988887
Q ss_pred ecCCCCCCCC-----cccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHH
Q 015763 266 WADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (401)
Q Consensus 266 ~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A 338 (401)
+......... .......++|||+|||..+++++|+++|+.||.|.+|+|.++..++ ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543221110 1111345799999999999999999999999999999999987654 89999999999999999
Q ss_pred HHhhcCCeeCCeEEEEEeccCCC
Q 015763 339 VKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 339 ~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
+..||+..|+|+.|+|.++..+-
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999998643
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=1.2e-24 Score=205.54 Aligned_cols=168 Identities=22% Similarity=0.457 Sum_probs=149.3
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
++.+|||+|||..+++++|+++|..||+ |..++++++ ..+++++|||||.|.+.++|..|+..|++ ..+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g--~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNG--LRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhccc--EEECCeeEEE
Confidence 4678999999999999999999999998 999999998 45688999999999999999999999876 5778999999
Q ss_pred eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC-C-CCeEEEEeCCHHHHHHHHHhh
Q 015763 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~-~-kg~afV~f~~~~~A~~A~~~l 342 (401)
.++.+.... ...++|||+|||..+++++|+.+|++||.|..+.|+.+... . +|||||+|.+.++|..|+..|
T Consensus 78 ~~a~~~~~~------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 78 SYARPSSDS------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred Eeecccccc------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 998765432 34568999999999999999999999999999999877643 2 899999999999999999999
Q ss_pred cCCeeCC--eEEEEEeccCCCc
Q 015763 343 EKYEIDG--QVLEVVLAKPQTD 362 (401)
Q Consensus 343 ~g~~i~g--~~l~v~~a~~~~~ 362 (401)
||..+.| ++|.|.|+..+..
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CCCccCCCceeEEEEECCCCCc
Confidence 9999987 6799999987653
No 23
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=186.68 Aligned_cols=144 Identities=26% Similarity=0.461 Sum_probs=125.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhc-ccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..+.+||.|||+++.+++|+.+|+ +.|+|..|.++.+.. |+++|+|.|+|++++.+++|++.||...+.||.|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 445699999999999999999995 678999999999875 999999999999999999999999999999999998653
Q ss_pred ccc-----------------------------------------------------------------------------
Q 015763 184 ETK----------------------------------------------------------------------------- 186 (401)
Q Consensus 184 ~~~----------------------------------------------------------------------------- 186 (401)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 310
Q ss_pred --------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhc
Q 015763 187 --------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (401)
Q Consensus 187 --------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 252 (401)
.++||.||.+.+....|.+.|.-.|. +..+.+..+ .-+.++||+.++|..+-.+-.|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~id--KeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSID--KEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeec--cccccCCeeEEEecchHHHHHHHHhhcc
Confidence 25889999999999999999999998 888888776 3457889999999998888888876653
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=1e-23 Score=206.11 Aligned_cols=171 Identities=19% Similarity=0.387 Sum_probs=145.6
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
..++|||+|||..+++.+|+++|.++|+ |..+.++.+ ..++.++|||||.|.+.++|..|+. |+ +..+.++.+.+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~--g~~~~g~~i~v 162 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LT--GQMLLGRPIIV 162 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hC--CCEECCeeeEE
Confidence 4578999999999999999999999997 999999998 4678899999999999999999986 43 45677888888
Q ss_pred eecCCCCCCC------CcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHH
Q 015763 265 SWADPKSTPD------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSAL 336 (401)
Q Consensus 265 ~~~~~~~~~~------~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~ 336 (401)
.++....... .....+..++|||+|||..+++++|+++|++||.|..|.|..+..+. +|||||+|.+.++|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 7654332111 11112336899999999999999999999999999999999887653 899999999999999
Q ss_pred HHHHhhcCCeeCCeEEEEEeccCC
Q 015763 337 KAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 337 ~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
+|+..|||..|.|++|+|.||...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 25
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=2e-24 Score=171.52 Aligned_cols=170 Identities=24% Similarity=0.378 Sum_probs=149.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
...||||+||+..++++-|.++|-+.|+|.++++.+++.+...+||||++|.+.++|.-|++-||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
...+ | +
T Consensus 88 ~~~~----n-------------------------------------------------------------l--------- 93 (203)
T KOG0131|consen 88 AHQK----N-------------------------------------------------------------L--------- 93 (203)
T ss_pred cccc----c-------------------------------------------------------------c---------
Confidence 2110 0 0
Q ss_pred eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEE-EecCCCCCC--CCeEEEEeCCHHHHHHHHHh
Q 015763 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v-~i~~~~~~~--kg~afV~f~~~~~A~~A~~~ 341 (401)
..+.+|||+||.+.+++..|...|+.||.+... .|.++..++ +|||||.|.+.+.+.+|+.+
T Consensus 94 ---------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 94 ---------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ---------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 112479999999999999999999999988764 666666644 89999999999999999999
Q ss_pred hcCCeeCCeEEEEEeccCCCcC
Q 015763 342 TEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
+||..+..++|+|+|+..+..+
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hccchhcCCceEEEEEEecCCC
Confidence 9999999999999999876444
No 26
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.6e-24 Score=180.21 Aligned_cols=157 Identities=31% Similarity=0.602 Sum_probs=145.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
..-|||+.|.+.++-+.|+..|.+||.|..+++++|..|+++|||+||-|.++++|++||..|||.-|.+|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred c----------------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHH
Q 015763 186 K----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (401)
Q Consensus 186 ~----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (401)
+ +++|++|++..++++.+++.|++||+ |..+++.++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 3 68999999999999999999999999 999999986 78999999999999
Q ss_pred HHHHHHHhcCCcccCCCCCeeeecCCCCC
Q 015763 244 DYSRQKMLNANFKLDGNTPTISWADPKST 272 (401)
Q Consensus 244 ~~a~~~l~~~~~~~~~~~~~v~~~~~~~~ 272 (401)
.+|+-.+++. .+.|..+++.|-.....
T Consensus 214 ahAIv~mNnt--ei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNT--EIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCc--eeCceEEEEeccccCCC
Confidence 9999999765 66788888888765544
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.9e-24 Score=191.83 Aligned_cols=173 Identities=25% Similarity=0.474 Sum_probs=151.3
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCC-cccCCCCCeee
Q 015763 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTIS 265 (401)
Q Consensus 187 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~-~~~~~~~~~v~ 265 (401)
-++||+.+|+.|++.+|+++|++||- |..|.+++| ..++.++|+|||.|.+.++|.+|+.+|++.. +......+.+.
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 37999999999999999999999997 999999999 7788999999999999999999999998764 44445566777
Q ss_pred ecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcC
Q 015763 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEK 344 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g 344 (401)
+++.....- ...+.|||+-|++.+|+.+|+.+|++||.|++|+|.++..+. ||+|||+|.+.+.|..|++.|||
T Consensus 113 ~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 113 YADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 777665432 234689999999999999999999999999999999999887 99999999999999999999998
Q ss_pred -CeeCC--eEEEEEeccCCCcCCCC
Q 015763 345 -YEIDG--QVLEVVLAKPQTDKKTE 366 (401)
Q Consensus 345 -~~i~g--~~l~v~~a~~~~~~~~~ 366 (401)
.++.| .+|.|.||..++.+...
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred ceeeccCCCceEEEecccCCCchHH
Confidence 55665 57999999988776443
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=3.2e-23 Score=173.39 Aligned_cols=172 Identities=24% Similarity=0.466 Sum_probs=154.1
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
..+.+|.|.=||.++|+++++.+|...|+ |+++++++| ..++.+-||+||.|.++.+|.+|+..|++ +++....+.
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEE
Confidence 34678899999999999999999999999 999999999 68899999999999999999999999965 688899999
Q ss_pred eeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHh
Q 015763 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~ 341 (401)
|+++.|.... .....|||++||..+|..+|.++|++||.|.--+|+.+.-+. ||.+||+|....+|..|++.
T Consensus 115 VSyARPSs~~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDS------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhh------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 9999988654 445689999999999999999999999999877777776655 99999999999999999999
Q ss_pred hcCCeeCCe--EEEEEeccCCCcCCC
Q 015763 342 TEKYEIDGQ--VLEVVLAKPQTDKKT 365 (401)
Q Consensus 342 l~g~~i~g~--~l~v~~a~~~~~~~~ 365 (401)
|||..-.|. +|.|.||..+.....
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~ 214 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTN 214 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccc
Confidence 999998876 699999987755433
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.90 E-value=5.3e-23 Score=205.67 Aligned_cols=168 Identities=21% Similarity=0.444 Sum_probs=147.1
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeec
Q 015763 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (401)
Q Consensus 188 ~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~ 267 (401)
+|||+|||..+++++|+++|+++|+ |..++++++ ..+++++|||||.|.+.++|.+|+..++.. .+.++.+.+.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~-v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP-VLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecc
Confidence 5899999999999999999999998 999999998 556889999999999999999999998653 467899999887
Q ss_pred CCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCe
Q 015763 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE 346 (401)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~ 346 (401)
....... .....+|||+|||.++++++|+++|++||.|..|+|..+..+. +|||||+|.+.++|.+|+..|||..
T Consensus 78 ~~~~~~~----~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 153 (562)
T TIGR01628 78 QRDPSLR----RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML 153 (562)
T ss_pred ccccccc----ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE
Confidence 5432221 1234689999999999999999999999999999999887765 9999999999999999999999999
Q ss_pred eCCeEEEEEeccCCCcC
Q 015763 347 IDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 347 i~g~~l~v~~a~~~~~~ 363 (401)
+.|+.|.|.....+..+
T Consensus 154 ~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 154 LNDKEVYVGRFIKKHER 170 (562)
T ss_pred ecCceEEEecccccccc
Confidence 99999999877655443
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=1.3e-22 Score=196.59 Aligned_cols=188 Identities=26% Similarity=0.389 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhcCCccCCeEEEEEeccc-----------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCC
Q 015763 158 KEFAKKAIDELHSKELKGKTIRCSLSET-----------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226 (401)
Q Consensus 158 ~~~a~~a~~~l~~~~~~g~~l~v~~~~~-----------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~ 226 (401)
.+.|.+||..+++..+........+..+ .++|||+|||..+++++|+++|+++|+ |..++++++ .+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~-I~~vrl~~D--~s 95 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGP-IYELRLMMD--FS 95 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCC-EEEEEEEEC--CC
Confidence 5788888888888777655444444322 368999999999999999999999998 999999998 57
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhc
Q 015763 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306 (401)
Q Consensus 227 ~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~ 306 (401)
+.++|||||.|.+.++|..|+..|++..+ ..++.+.+.++ ...++|||+|||..+++++|.+.|+++
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i-~~Gr~l~V~~S------------~~~~rLFVgNLP~~~TeeeL~eeFskv 162 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEI-RPGRLLGVCIS------------VDNCRLFVGGIPKNKKREEILEEFSKV 162 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCee-cCCcccccccc------------ccCceeEeecCCcchhhHHHHHHhhcc
Confidence 88999999999999999999999876543 23455555443 235789999999999999999999998
Q ss_pred C-CeeEEEecCC---CCCCCCeEEEEeCCHHHHHHHHHhhcC--CeeCCeEEEEEeccCCC
Q 015763 307 G-EVTKVVMPPG---KSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 307 G-~i~~v~i~~~---~~~~kg~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~a~~~~ 361 (401)
+ .+..+.+... +..++|||||+|.++++|..|++.|+. ..+.|+.|.|.|+.+..
T Consensus 163 ~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 163 TEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred cCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 6 3555544322 222389999999999999999998864 56889999999998754
No 31
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=2.9e-23 Score=176.51 Aligned_cols=153 Identities=28% Similarity=0.547 Sum_probs=140.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccccc
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 187 (401)
.|||+|||..+++.+|+.+|.+||+|..|.|+++ |+||...+...|..||..||+..|+|..|.|..+++++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 4999999999999999999999999999999966 89999999999999999999999999999998876542
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeec
Q 015763 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (401)
Q Consensus 188 ~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~ 267 (401)
+
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred CCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCee
Q 015763 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (401)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i 347 (401)
.+++|+|+||.+.++-.+|+..|.+||+|..+.|+++ |+||.|.-.++|..|++.|+++.|
T Consensus 77 -------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 77 -------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred -------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchHHHHhccccccc
Confidence 2368999999999999999999999999999999875 899999999999999999999999
Q ss_pred CCeEEEEEeccCCCcCCCC
Q 015763 348 DGQVLEVVLAKPQTDKKTE 366 (401)
Q Consensus 348 ~g~~l~v~~a~~~~~~~~~ 366 (401)
.|++++|.++++.-+..+.
T Consensus 138 ~gk~m~vq~stsrlrtapg 156 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTAPG 156 (346)
T ss_pred ccceeeeeeeccccccCCC
Confidence 9999999999987665443
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.4e-22 Score=177.74 Aligned_cols=190 Identities=25% Similarity=0.427 Sum_probs=157.9
Q ss_pred EecCHHHHHHHHHHhcCCccCCeEEEEEecc----------------cccccccCCCCCCCCHHHHHHHHHhhCCceeEE
Q 015763 154 SFRSKEFAKKAIDELHSKELKGKTIRCSLSE----------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217 (401)
Q Consensus 154 ~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~----------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~ 217 (401)
...+.++|.++|..-. |..|.|.... ..+.+||+.||..+.+++|.-+|.+.|+ |..+
T Consensus 40 ~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~el 113 (506)
T KOG0117|consen 40 GVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYEL 113 (506)
T ss_pred ccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeE
Confidence 3444788888885533 3445554433 2368999999999999999999999999 9999
Q ss_pred EEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHH
Q 015763 218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297 (401)
Q Consensus 218 ~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e 297 (401)
+++++| .++.+||||||.|.+.+.|+.|++.|++..++ .|+.|.|+.+ ..+++|||+|||...+++
T Consensus 114 RLMmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~S------------van~RLFiG~IPK~k~ke 179 (506)
T KOG0117|consen 114 RLMMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVS------------VANCRLFIGNIPKTKKKE 179 (506)
T ss_pred EEeecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEe------------eecceeEeccCCccccHH
Confidence 999994 78999999999999999999999999987765 6777777766 556899999999999999
Q ss_pred HHHHHHhhcC-CeeEEEecCCCC---CCCCeEEEEeCCHHHHHHHHHhhc--CCeeCCeEEEEEeccCCCcC
Q 015763 298 KIKELFQRHG-EVTKVVMPPGKS---GKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 298 ~l~~~f~~~G-~i~~v~i~~~~~---~~kg~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~a~~~~~~ 363 (401)
+|++.|++.+ .|.+|.|..... .+||||||+|.++..|..|-++|- ..++.|..+.|.||.+....
T Consensus 180 eIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ 251 (506)
T KOG0117|consen 180 EILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP 251 (506)
T ss_pred HHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC
Confidence 9999999986 677777765443 339999999999999999999874 37778999999999886544
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.9e-22 Score=169.41 Aligned_cols=258 Identities=22% Similarity=0.356 Sum_probs=163.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCC--eEEEEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRCS 181 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~ 181 (401)
+.++|||+-|...-.++|++.+|..||.|.+|.+++... |.+||+|||.|.+.-+|..||..|||.. +.| ..|.|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 566799999999999999999999999999999999887 9999999999999999999999999865 433 568888
Q ss_pred ecccccc---------------------------------------cccCC----CCCCCCH----HHHHHHHHhhCC--
Q 015763 182 LSETKNR---------------------------------------LFIGN----VPKNWTE----DEFRKVIEDVGP-- 212 (401)
Q Consensus 182 ~~~~~~~---------------------------------------l~v~~----l~~~~~~----~~l~~~f~~~g~-- 212 (401)
++...+. +...+ |..-++. -+....++..|-
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 8876421 00011 1111110 011111221110
Q ss_pred -ceeEEEEeeCCCC------CCC-----CccE-EEEEeCCHHHHHHHHHHHhcCCcccCC--------------------
Q 015763 213 -GVETIELIKDPQN------PSR-----NRGF-SFVLYYNNACADYSRQKMLNANFKLDG-------------------- 259 (401)
Q Consensus 213 -~v~~~~~~~~~~~------~~~-----~~g~-~~v~f~~~~~a~~a~~~l~~~~~~~~~-------------------- 259 (401)
.|....-...|.. .+. -.|| +...+.+...+..++-.-.-..+....
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0110000000000 000 1122 112222222222221110000000000
Q ss_pred ---CCCeeeecC---CCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCC
Q 015763 260 ---NTPTISWAD---PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAE 331 (401)
Q Consensus 260 ---~~~~v~~~~---~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~ 331 (401)
....+..+- |.....--...+.+|+|||..||....+.+|.+.|-.||.|.+.++..++.++ |+|+||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 000000000 11111112223567999999999999999999999999999988888887766 9999999999
Q ss_pred HHHHHHHHHhhcCCeeCCeEEEEEeccCCCcC
Q 015763 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 332 ~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
+.+|+.||.+|||+.|+-++|+|.+-+++...
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 99999999999999999999999999887543
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.88 E-value=7.8e-21 Score=173.25 Aligned_cols=247 Identities=17% Similarity=0.258 Sum_probs=186.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.......|.+++|||++|+++|.+||+.| .|.++.+.+. +|++.|-|||+|.+.+++++||+. +...+..|.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 34456679999999999999999999999 4777666543 599999999999999999999954 8888889999987
Q ss_pred eccc-----------------ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHH
Q 015763 182 LSET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (401)
Q Consensus 182 ~~~~-----------------~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~ 244 (401)
.+.. ...+.++.||+.+|+++|.++|+.+-.+-..+.++.++ .+++.|-|||+|.+.+.|+
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~--rgR~tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ--RGRPTGEAFVQFESQESAE 159 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC--CCCcccceEEEecCHHHHH
Confidence 7632 24588899999999999999999876523346667764 3558899999999999999
Q ss_pred HHHHHHhcCCcccCCCCCeeeec-----------------------------------CCC-------------------
Q 015763 245 YSRQKMLNANFKLDGNTPTISWA-----------------------------------DPK------------------- 270 (401)
Q Consensus 245 ~a~~~l~~~~~~~~~~~~~v~~~-----------------------------------~~~------------------- 270 (401)
+|++.... .+..+.+.|..+ ...
T Consensus 160 ~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~ 236 (510)
T KOG4211|consen 160 IALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGF 236 (510)
T ss_pred HHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCcccc
Confidence 99976431 111111111000 000
Q ss_pred ---------------------CCCCCccc------------ccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCC
Q 015763 271 ---------------------STPDHSAA------------ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG 317 (401)
Q Consensus 271 ---------------------~~~~~~~~------------~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~ 317 (401)
.....+.. ......+..++||+..+.-+|..+|+.. ....|.|...
T Consensus 237 ~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~ig 315 (510)
T KOG4211|consen 237 SRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEIG 315 (510)
T ss_pred ccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEeC
Confidence 00000000 0012678899999999999999999976 4448888888
Q ss_pred CCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 318 KSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 318 ~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.+++ .|-|+|+|.|+++|..|+.+ ++..+..+-|.+.....
T Consensus 316 ~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 316 PDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNGA 357 (510)
T ss_pred CCCccCCcceeecccchhhHhhhcc-CCcccCcceeeecccCC
Confidence 8888 89999999999999999996 88888888888877644
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=3e-21 Score=191.33 Aligned_cols=169 Identities=15% Similarity=0.300 Sum_probs=132.0
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhC-----------CceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhc
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVG-----------PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-----------~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 252 (401)
...++|||+|||+.+++++|.++|..++ ..|..+.+ ...++||||+|.+.+.|..|+. |++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 3457899999999999999999999862 22333332 3468999999999999999994 554
Q ss_pred CCcccCCCCCeeeecCCCCCC-----------------------CCcccccccceEEEccCCCCCCHHHHHHHHhhcCCe
Q 015763 253 ANFKLDGNTPTISWADPKSTP-----------------------DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309 (401)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~~-----------------------~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i 309 (401)
+.+.+..+.+......... .........++|||+|||..+++++|+++|+.||.|
T Consensus 245 --~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 245 --IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred --eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 4566676666533211100 000012335799999999999999999999999999
Q ss_pred eEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 310 TKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 310 ~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
..+.|+.+..+. +|||||+|.+.++|..|+..|||..|.|+.|.|.+|.....
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~ 377 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGAN 377 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCC
Confidence 999998876443 89999999999999999999999999999999999976543
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=2.2e-21 Score=183.90 Aligned_cols=221 Identities=26% Similarity=0.415 Sum_probs=175.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
...+|||+|||+.+++++|+.+| |||.|..+..|.+|...+.++.+.||.|+|....
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 55679999999999999999998 7999999999999999999999999999986643
Q ss_pred cc------------------------------------------------------------------------------
Q 015763 185 TK------------------------------------------------------------------------------ 186 (401)
Q Consensus 185 ~~------------------------------------------------------------------------------ 186 (401)
.+
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 21
Q ss_pred -----------------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHH
Q 015763 187 -----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (401)
Q Consensus 187 -----------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (401)
..++++|||..+..+.+..+|..||+ +..+.+. | ...-++|.|.++.+|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp--~-----~G~~aiv~fl~p~eA 434 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLP--P-----GGTGAIVEFLNPLEA 434 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecC--c-----ccceeeeeecCccch
Confidence 24889999999999999999999998 7777443 2 223489999999999
Q ss_pred HHHHHHHhcCCcccCCCCCeeeecCCCCCC------------------------------CC--c------------ccc
Q 015763 244 DYSRQKMLNANFKLDGNTPTISWADPKSTP------------------------------DH--S------------AAA 279 (401)
Q Consensus 244 ~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~------------------------------~~--~------------~~~ 279 (401)
..|+..|....+ ...++++.|++..-.. .. . ...
T Consensus 435 r~Afrklaysr~--k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~ 512 (725)
T KOG0110|consen 435 RKAFRKLAYSRF--KSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDE 512 (725)
T ss_pred HHHHHHhchhhh--ccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhcc
Confidence 999988754322 2222222222110000 00 0 000
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-----CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
...++|||+||++.++.+.|..+|...|.|..|.|...++.. .|||||+|.+.++|..|++.|+|+.|+|+.|.|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 112349999999999999999999999999999998776542 599999999999999999999999999999999
Q ss_pred Eecc
Q 015763 355 VLAK 358 (401)
Q Consensus 355 ~~a~ 358 (401)
.++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9998
No 37
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.85 E-value=7.6e-21 Score=170.03 Aligned_cols=176 Identities=26% Similarity=0.511 Sum_probs=150.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
+.++|||++|+|.++++.|+.+|.+||.|..|.+.+++.+++++||+||.|.++.....+|. ...+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56789999999999999999999999999999999999999999999999999999999984 46677888888777665
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
+...- ...+
T Consensus 84 ~r~~~----------------------------------~~~~------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQ----------------------------------TKVG------------------------------------- 92 (311)
T ss_pred Ccccc----------------------------------cccc-------------------------------------
Confidence 43210 0000
Q ss_pred eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 015763 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l 342 (401)
.....+.|||++||..+++++|+++|.+||.|..+.+..+.... +||+||.|.+.+.+.+++. .
T Consensus 93 -------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 93 -------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred -------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 00134689999999999999999999999999999998888766 9999999999999999988 4
Q ss_pred cCCeeCCeEEEEEeccCCCcCCCC
Q 015763 343 EKYEIDGQVLEVVLAKPQTDKKTE 366 (401)
Q Consensus 343 ~g~~i~g~~l~v~~a~~~~~~~~~ 366 (401)
.-+.|+|+.+.|..|.++......
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ceeeecCceeeEeeccchhhcccc
Confidence 889999999999999998776544
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=3.4e-20 Score=164.84 Aligned_cols=246 Identities=23% Similarity=0.274 Sum_probs=189.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCC--ccCCeEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~--~~~g~~l~v 180 (401)
...++.|.+||||+++++.+|..++.+||.|..+.+.+.+. .||++|.+.++|...+...... .+.|+.|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 34678899999999999999999999999999999877532 7999999999998844332222 245666666
Q ss_pred Eecccc----------------------------------------------cccccCCCCCCCCHHHHHHHHHhhCCce
Q 015763 181 SLSETK----------------------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214 (401)
Q Consensus 181 ~~~~~~----------------------------------------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v 214 (401)
+++... -+++|.++-+.++-+-|.++|++||...
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 554311 1478889999999999999999999944
Q ss_pred eEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCC------------------CCC--
Q 015763 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS------------------TPD-- 274 (401)
Q Consensus 215 ~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~------------------~~~-- 274 (401)
+-+++.+. ..-.|+|+|.+...|..|...|.+.++.-....+++.++.-.. ...
T Consensus 179 KIiTF~Kn------n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFTKN------NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEecc------cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 44444442 2334999999999999999999988876666666555542110 000
Q ss_pred ----------------------------------C-ccccc--ccceEEEccCC-CCCCHHHHHHHHhhcCCeeEEEecC
Q 015763 275 ----------------------------------H-SAAAS--QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPP 316 (401)
Q Consensus 275 ----------------------------------~-~~~~~--~~~~l~v~nlp-~~~t~e~l~~~f~~~G~i~~v~i~~ 316 (401)
. ..... .+..|.|.||. ..+|.+-|..+|+-||.|.+|.|..
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 0 00001 14778899996 6889999999999999999999998
Q ss_pred CCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcC
Q 015763 317 GKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 317 ~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
.+. .-|+|+|.+..+|..|+..|+|..|.|++|+|.+++-..-.
T Consensus 333 nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 333 NKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred cCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 875 46999999999999999999999999999999999765443
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=3.6e-19 Score=147.70 Aligned_cols=207 Identities=18% Similarity=0.350 Sum_probs=151.7
Q ss_pred CCeEEEcCCCCCCCHHHHHH----hhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 106 GSEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~----~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
..||||.||+..+..++|+. +|++||.|..|...+. .+.+|-|||.|++...|..|+..|+|..+.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 33999999999999999888 9999999999988754 7789999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
+|..+..++.+.-+..+... .......+...+.. ...++..+. .
T Consensus 86 yA~s~sdii~~~~~~~v~~~----------~k~~~~~~~~~~~~----------------------~~~ng~~~~----~ 129 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKE----------KKINGEILARIKQP----------------------LDTNGHFYN----M 129 (221)
T ss_pred cccCccchhhccCceecccc----------CccccccccccCCc----------------------ccccccccc----c
Confidence 99988776544222111100 00000001000000 000000000 0
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
..-....+. .....++..+||+.|||..++.+.|..+|.+|...+.|+++.... ++|||+|.+...|..|...
T Consensus 130 ~~~~~p~p~----~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~ 202 (221)
T KOG4206|consen 130 NRMNLPPPF----LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQA 202 (221)
T ss_pred ccccCCCCc----cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhhh
Confidence 000000111 122236678999999999999999999999999999999988764 6999999999999999999
Q ss_pred hcCCeeC-CeEEEEEecc
Q 015763 342 TEKYEID-GQVLEVVLAK 358 (401)
Q Consensus 342 l~g~~i~-g~~l~v~~a~ 358 (401)
|.+..|. ...++|.+|+
T Consensus 203 lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 203 LQGFKITKKNTMQITFAK 220 (221)
T ss_pred hccceeccCceEEecccC
Confidence 9999997 8889998875
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=5.1e-19 Score=143.08 Aligned_cols=83 Identities=18% Similarity=0.406 Sum_probs=76.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..+++|||+|||..+++++|+++|++||.|.+|.|+.+..+. +|||||+|.+.++|..|+..||+..|.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 445789999999999999999999999999999999887644 899999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 86543
No 41
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.6e-18 Score=161.18 Aligned_cols=247 Identities=20% Similarity=0.405 Sum_probs=191.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc-----------C-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----------G-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~-----------g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~ 172 (401)
..+.++|+++|+.+++..+..+|..- | .+..+.+.. .+.|||++|.+.+.|..|+ .+.+..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-cccchh
Confidence 56689999999999999999988654 3 355555533 4669999999999999999 678888
Q ss_pred cCCeEEEEEecc-----------------------------cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC
Q 015763 173 LKGKTIRCSLSE-----------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (401)
Q Consensus 173 ~~g~~l~v~~~~-----------------------------~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 223 (401)
+.|+.+++.... ..++++|++||...++.+++++...||+ +....++.+.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d~ 325 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKDS 325 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeeccc
Confidence 888877664422 1257999999999999999999999998 9999999984
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCC------------------cccccccceE
Q 015763 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH------------------SAAASQVKAL 285 (401)
Q Consensus 224 ~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~~~~l 285 (401)
..+.++||+|+.|.+...+..|...|++ +.+.+..+.++.+.+...... .....++..|
T Consensus 326 -~~g~skg~af~ey~dpsvtd~A~agLnG--m~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 326 -ATGNSKGFAFCEYCDPSVTDQAIAGLNG--MQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred -ccccccceeeeeeeCCcchhhhhcccch--hhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 4589999999999999999999988876 355566666665543321110 2222344556
Q ss_pred EEccCC--CCC-CH-------HHHHHHHhhcCCeeEEEecCC-CCCC----CCeEEEEeCCHHHHHHHHHhhcCCeeCCe
Q 015763 286 YVKNIP--DNT-ST-------EKIKELFQRHGEVTKVVMPPG-KSGK----RDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (401)
Q Consensus 286 ~v~nlp--~~~-t~-------e~l~~~f~~~G~i~~v~i~~~-~~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (401)
++.|+= ..+ .+ ++|+.-|.+||.|..|.|++. .... .|..||+|++.+++++|+..|+|++|+||
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 666652 111 11 456777899999999999988 3322 67799999999999999999999999999
Q ss_pred EEEEEeccCCCc
Q 015763 351 VLEVVLAKPQTD 362 (401)
Q Consensus 351 ~l~v~~a~~~~~ 362 (401)
.|...|..+-..
T Consensus 483 tVvtsYydeDkY 494 (500)
T KOG0120|consen 483 TVVASYYDEDKY 494 (500)
T ss_pred EEEEEecCHHHh
Confidence 999999876433
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=9.9e-19 Score=153.31 Aligned_cols=169 Identities=24% Similarity=0.491 Sum_probs=146.9
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeee
Q 015763 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (401)
Q Consensus 187 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 266 (401)
+++||+.+.+.+.++.|+..|.+||+ |.++.+.+|| .+++++||+||+|.-++.|.-|+..|++. .+.||.+.|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 68999999999999999999999999 9999999995 68999999999999999999999999875 67888888875
Q ss_pred cCCCCCCCC-----cccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHH
Q 015763 267 ADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAV 339 (401)
Q Consensus 267 ~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~ 339 (401)
......... -.....-++|||..+-+++++++|+..|.-||.|.+|.+.+...+. |||+||+|.+..+-..|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 433322111 0111234799999999999999999999999999999999998876 999999999999999999
Q ss_pred HhhcCCeeCCeEEEEEeccC
Q 015763 340 KDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 340 ~~l~g~~i~g~~l~v~~a~~ 359 (401)
..||-+-++|..|+|-.+--
T Consensus 270 asMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hhcchhhcccceEecccccC
Confidence 99999999999999977643
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=3.5e-17 Score=143.05 Aligned_cols=204 Identities=21% Similarity=0.349 Sum_probs=145.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCee--------EEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 174 (401)
+...+.|||.|||.++|.+++.++|++||-|. .|++.++.. |+.+|=|.+.|-..+++..|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45677899999999999999999999999764 478888877 999999999999999999999999999999
Q ss_pred CeEEEEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCC
Q 015763 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (401)
Q Consensus 175 g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~ 254 (401)
|+.|+|..|+-. .-|. .+ .+++.++ ...-.+-+..+....
T Consensus 210 g~~~rVerAkfq----------------------~Kge--------~~--~~~k~k~--------k~~~~kk~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAKFQ----------------------MKGE--------YD--ASKKEKG--------KCKDKKKLKKQQQKL 249 (382)
T ss_pred CcEEEEehhhhh----------------------hccC--------cC--ccccccc--------ccccHHHHHHHHHhh
Confidence 999999987522 1121 00 0000000 000001111111111
Q ss_pred cccCCCCCeeeecCCCCCCCCcccccccceEEEccCC----CCCC-------HHHHHHHHhhcCCeeEEEecCCCCCCCC
Q 015763 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP----DNTS-------TEKIKELFQRHGEVTKVVMPPGKSGKRD 323 (401)
Q Consensus 255 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp----~~~t-------~e~l~~~f~~~G~i~~v~i~~~~~~~kg 323 (401)
+...... .........++|.|+|+- +..+ .++|++-+.+||.|.+|.|...... |
T Consensus 250 ~dw~pd~------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd--G 315 (382)
T KOG1548|consen 250 LDWRPDR------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD--G 315 (382)
T ss_pred cccCCCc------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC--c
Confidence 1110000 011112455899999994 2334 2567788999999999999754433 7
Q ss_pred eEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 324 ~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
.+-|.|.+.+.|..|++.|+|+.|+||.|..+......
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 99999999999999999999999999999998776543
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.2e-16 Score=127.50 Aligned_cols=183 Identities=20% Similarity=0.327 Sum_probs=136.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||.++.+.+|..+|-+||.|..|.+... ....+||||+|.++.+|..||..-+|..+.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 36788999999999999999999999999999988543 334679999999999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
...+.- ...+| .+.-.++-
T Consensus 81 rggr~s-------------------------------------~~~~G----------------------~y~gggrg-- 99 (241)
T KOG0105|consen 81 RGGRSS-------------------------------------SDRRG----------------------SYSGGGRG-- 99 (241)
T ss_pred cCCCcc-------------------------------------ccccc----------------------ccCCCCCC--
Confidence 654310 00000 00000000
Q ss_pred eeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc
Q 015763 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~ 343 (401)
-.......-.+....-.+|.|++||.+.++++|+.+..+.|.|....+.++ |++.|+|...++.+-|++.|.
T Consensus 100 ---Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 100 ---GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred ---CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhc
Confidence 000000000111133468999999999999999999999999999998887 479999999999999999998
Q ss_pred CCeeC--CeEEEEEecc
Q 015763 344 KYEID--GQVLEVVLAK 358 (401)
Q Consensus 344 g~~i~--g~~l~v~~a~ 358 (401)
..++. |-...+.+-.
T Consensus 172 ~~~~~seGe~~yirv~~ 188 (241)
T KOG0105|consen 172 DQKFRSEGETAYIRVRG 188 (241)
T ss_pred cccccCcCcEeeEEecc
Confidence 87664 5554444443
No 45
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=3.5e-17 Score=132.38 Aligned_cols=83 Identities=36% Similarity=0.677 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+++|.+||.|..|.++.++.+++++|||||+|.+.++|++||+.|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 46
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.72 E-value=1.4e-16 Score=140.69 Aligned_cols=251 Identities=17% Similarity=0.219 Sum_probs=185.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
..+...|..++|||..++.+|..||+-..-..-.+.+-...-|+..|.+.|.|.+++.-..|++. |...+.++.|.|..
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 34566788999999999999999997653222222222222377789999999999999999976 88888999998877
Q ss_pred cccc----------------------cccccCCCCCCCCHHHHHHHHH---hhCCceeEEEEeeCCCCCCCCccEEEEEe
Q 015763 183 SETK----------------------NRLFIGNVPKNWTEDEFRKVIE---DVGPGVETIELIKDPQNPSRNRGFSFVLY 237 (401)
Q Consensus 183 ~~~~----------------------~~l~v~~l~~~~~~~~l~~~f~---~~g~~v~~~~~~~~~~~~~~~~g~~~v~f 237 (401)
+... --+.+++||+.++..++.++|- ..+.....+.+++. ..++..|-|||.|
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r--pdgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR--PDGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC--CCCCcccceEEEe
Confidence 6532 2367789999999999999995 33433667777774 4788899999999
Q ss_pred CCHHHHHHHHHHHhcCCcccCCCCCeee----------------------ecCCC---CCCCCcccccccceEEEccCCC
Q 015763 238 YNNACADYSRQKMLNANFKLDGNTPTIS----------------------WADPK---STPDHSAAASQVKALYVKNIPD 292 (401)
Q Consensus 238 ~~~~~a~~a~~~l~~~~~~~~~~~~~v~----------------------~~~~~---~~~~~~~~~~~~~~l~v~nlp~ 292 (401)
.....|..|+.+-.. .+..|.+.+- ...|- ...........+.||.+++||+
T Consensus 214 a~ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy 290 (508)
T KOG1365|consen 214 ACEEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPY 290 (508)
T ss_pred cCHHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCCh
Confidence 999999998865321 1111111000 00000 0111122223468999999999
Q ss_pred CCCHHHHHHHHhhcC-CeeE--EEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 293 NTSTEKIKELFQRHG-EVTK--VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 293 ~~t~e~l~~~f~~~G-~i~~--v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
..+.++|..+|..|. .|.. |.++.+..++ .|-|||+|.+.+.|..|..+.+++...+|.|.|.-+..
T Consensus 291 ~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 291 EATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSV 361 (508)
T ss_pred hhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccH
Confidence 999999999999886 3443 8888888877 99999999999999999999998888999999988865
No 47
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=1.8e-15 Score=134.95 Aligned_cols=238 Identities=19% Similarity=0.258 Sum_probs=183.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeE-EEEEecCHHHHHHHHHHhcCCccCCe--EEEEEec
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKGK--TIRCSLS 183 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~-a~V~f~~~~~a~~a~~~l~~~~~~g~--~l~v~~~ 183 (401)
-+++|.|+-+-++-+-|..+|++||.|..|.-... +.|| |.|+|.+...|..|...|.|.-|..- .|+|.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 36889999999999999999999999987755432 2344 89999999999999999999887543 3555443
Q ss_pred cc---------------------------------------------------------------------ccccccCCC
Q 015763 184 ET---------------------------------------------------------------------KNRLFIGNV 194 (401)
Q Consensus 184 ~~---------------------------------------------------------------------~~~l~v~~l 194 (401)
.- +..|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 20 023555665
Q ss_pred CC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCC
Q 015763 195 PK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (401)
Q Consensus 195 ~~-~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ 273 (401)
.. .+|.+.|..+|.-||. |..+.+... .+--|+|+|.+...|.-|+..|.++ .+.++.+++.++......
T Consensus 306 n~~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred chhccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCcccc
Confidence 44 4899999999999999 999998875 3467999999999999999999775 566788888877544211
Q ss_pred CC---------------c--------------ccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCe
Q 015763 274 DH---------------S--------------AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF 324 (401)
Q Consensus 274 ~~---------------~--------------~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~ 324 (401)
.. + ...+++.+|.+.|||.++++++|+.+|...|...+....-.++ +.+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~km 454 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RKM 454 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--cce
Confidence 00 0 0113467999999999999999999999998765443332222 358
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeCCe-EEEEEeccCC
Q 015763 325 GFIHYAERSSALKAVKDTEKYEIDGQ-VLEVVLAKPQ 360 (401)
Q Consensus 325 afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v~~a~~~ 360 (401)
|++.+.+.+.|..|+..++.+.+++. .|+|+|+++.
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred eecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999999999866 8999999863
No 48
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=1.9e-15 Score=124.30 Aligned_cols=230 Identities=17% Similarity=0.214 Sum_probs=132.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccC---CeEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTI 178 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~---g~~l 178 (401)
+..-+||||.+||.++...+|..+|+.|--...+.+.... .....+.+|||.|.+...|..|+..|||..|. +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 4467899999999999999999999998655555554322 22245679999999999999999999999884 7889
Q ss_pred EEEecccccccccCCCCCCCCH-HHHHH---HHHhh-CCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcC
Q 015763 179 RCSLSETKNRLFIGNVPKNWTE-DEFRK---VIEDV-GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (401)
Q Consensus 179 ~v~~~~~~~~l~v~~l~~~~~~-~~l~~---~f~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 253 (401)
++.+++.+.+..-......-.. ..+.. -+.+. ......+....+|.... ..+- ..|++.- .
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~-~~~~-----------a~al~~~--~ 176 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQ-EPGN-----------ADALKEN--D 176 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccC-Cccc-----------cccCCCc--c
Confidence 9999887654322221110000 00000 00000 00000000000000000 0000 0000000 0
Q ss_pred CcccCCCCCeeeecCCC-----CCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEE
Q 015763 254 NFKLDGNTPTISWADPK-----STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIH 328 (401)
Q Consensus 254 ~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~ 328 (401)
.+.-....-..++..+. ...........+.||||-||...+++++|+++|+.|......+|.... ....|||+
T Consensus 177 ~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~--g~~vaf~~ 254 (284)
T KOG1457|consen 177 TTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG--GMPVAFAD 254 (284)
T ss_pred ccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC--CcceEeec
Confidence 00000000000011111 111111222446899999999999999999999999877776664332 24789999
Q ss_pred eCCHHHHHHHHHhhcCCeeC
Q 015763 329 YAERSSALKAVKDTEKYEID 348 (401)
Q Consensus 329 f~~~~~A~~A~~~l~g~~i~ 348 (401)
|.+.+.|..|+..|.|..|.
T Consensus 255 ~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 255 FEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHHHHhhcceec
Confidence 99999999999999987663
No 49
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=2.7e-16 Score=136.52 Aligned_cols=95 Identities=23% Similarity=0.384 Sum_probs=85.5
Q ss_pred CCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeE
Q 015763 272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (401)
Q Consensus 272 ~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (401)
.+..+......++|+|+|||+...+-||+.+|.+||.|.+|.|+-+..++||||||+|++.++|.+|..+|||.+|.||+
T Consensus 86 ~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 86 PSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 33444445667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCcCCCC
Q 015763 352 LEVVLAKPQTDKKTE 366 (401)
Q Consensus 352 l~v~~a~~~~~~~~~ 366 (401)
|.|..|+..-..++.
T Consensus 166 IEVn~ATarV~n~K~ 180 (376)
T KOG0125|consen 166 IEVNNATARVHNKKK 180 (376)
T ss_pred EEEeccchhhccCCc
Confidence 999999987655444
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.67 E-value=1.1e-14 Score=128.56 Aligned_cols=247 Identities=19% Similarity=0.207 Sum_probs=197.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHH--hcCCccCCeEE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE--LHSKELKGKTI 178 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~--l~~~~~~g~~l 178 (401)
..+..+-.|.|++|-..+++.+|.+.++.||+|..+.+... +..|.|+|.+.+.|+.|+.. -+...+.|+.-
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchh
Confidence 34456778999999999999999999999999999988665 34799999999999999743 23344566665
Q ss_pred EEEecccc-------------cc--cccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHH
Q 015763 179 RCSLSETK-------------NR--LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (401)
Q Consensus 179 ~v~~~~~~-------------~~--l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a 243 (401)
.+.++.+. +- +.|-|--+.+|.+-|..+...+|+ |..|.+++. ..-.|.|+|.+.+.|
T Consensus 100 l~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVA 172 (494)
T ss_pred hcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHH
Confidence 55554322 22 334566677899999999999998 878777763 445799999999999
Q ss_pred HHHHHHHhcCCcccCCCCCeeeecCCCCCC--------------------------------------------------
Q 015763 244 DYSRQKMLNANFKLDGNTPTISWADPKSTP-------------------------------------------------- 273 (401)
Q Consensus 244 ~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~-------------------------------------------------- 273 (401)
++|...|++..+.-...++.+.++.|....
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y 252 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGY 252 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCC
Confidence 999999999998888888888888766100
Q ss_pred --------------------------CCcccccccceEEEccCC-CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEE
Q 015763 274 --------------------------DHSAAASQVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGF 326 (401)
Q Consensus 274 --------------------------~~~~~~~~~~~l~v~nlp-~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~af 326 (401)
..+....+++.++|.+|. ..++-+.|.++|-.||.|.+|+..+.+. |.|+
T Consensus 253 ~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtam 329 (494)
T KOG1456|consen 253 YSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAM 329 (494)
T ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeE
Confidence 000111235789999998 4678889999999999999999988876 6899
Q ss_pred EEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcC
Q 015763 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 327 V~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
|++.+....++|+..||+..+.|.+|.|.+++...-.
T Consensus 330 Vemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 330 VEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVS 366 (494)
T ss_pred EEcCcHHHHHHHHHHhccCccccceEEEeeccccccc
Confidence 9999999999999999999999999999998865443
No 51
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.66 E-value=3.1e-16 Score=145.34 Aligned_cols=172 Identities=19% Similarity=0.440 Sum_probs=140.1
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeee
Q 015763 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (401)
Q Consensus 187 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 266 (401)
+++|+.-|+...+..+|.++|+.+|+ |..++++.| +.+.+++|.+||.|.+.+....|+ .|++ ..+.|.++.|+.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsG--qrllg~pv~vq~ 254 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSG--QRLLGVPVIVQL 254 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcC--CcccCceeEecc
Confidence 57788888888899999999999999 999999999 788899999999999998888777 4443 356677777765
Q ss_pred cCCCCCC--------CCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCC-CCC-CCeEEEEeCCHHHHH
Q 015763 267 ADPKSTP--------DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSAL 336 (401)
Q Consensus 267 ~~~~~~~--------~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~-~~~-kg~afV~f~~~~~A~ 336 (401)
....... .......+-..|+|+||-+++++.+|+.+|..||.|..|.+.++. .+. +|||||+|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 4322111 101111222349999999999999999999999999999999997 444 999999999999999
Q ss_pred HHHHhhcCCeeCCeEEEEEeccCCCcC
Q 015763 337 KAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 337 ~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
.|+..|||+.|.|+.|+|.....+-..
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeeccc
Confidence 999999999999999999888765443
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=2.6e-15 Score=106.61 Aligned_cols=70 Identities=44% Similarity=0.872 Sum_probs=67.0
Q ss_pred EEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 109 v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
|||+|||+++++.+|+.+|++||.|..+.+..+ .+++++++|||+|.+.++|.+|+..|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 5699999999999999999999999999999999985
No 53
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.62 E-value=1.6e-14 Score=132.45 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=131.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeec
Q 015763 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (401)
Q Consensus 188 ~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~ 267 (401)
-|.++.||+.+|.++|..+|+.++ |..+.+.+ ..++..|-|||+|.+.+++.+|+++- ...+..+.|.|--+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~Alkkd---R~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKD---RESMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhh---HHHhCCceEEEEcc
Confidence 466789999999999999999998 88866655 46889999999999999999998864 34667777777665
Q ss_pred CCCCCCCC-----cccccccceEEEccCCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCC-CCeEEEEeCCHHHHHHHHH
Q 015763 268 DPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (401)
Q Consensus 268 ~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~-v~i~~~~~~~-kg~afV~f~~~~~A~~A~~ 340 (401)
.+...... .....+...|.+++||+.||+++|.++|+..-.|.. |.++.+..++ .|-|||+|++.+.|++|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 44332111 111134578999999999999999999998755555 6677777766 8999999999999999999
Q ss_pred hhcCCeeCCeEEEEEeccCCC
Q 015763 341 DTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 341 ~l~g~~i~g~~l~v~~a~~~~ 361 (401)
. |...|+.|-|.|..+.-..
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred H-HHHhhccceEEeehhHHHH
Confidence 6 8899999999998886533
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.60 E-value=3.4e-15 Score=106.07 Aligned_cols=69 Identities=25% Similarity=0.616 Sum_probs=64.9
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEE
Q 015763 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (401)
|||+|||..+++++|+++|++||.|..+.+..+..+. +++|||+|.+.++|.+|+..|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999998874444 89999999999999999999999999999986
No 55
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=1.4e-14 Score=114.95 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=74.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
.+.|||+||+..+++.+|..+|..||.|..|.|...+. |||||+|+++-+|..|+..|+|..|.|..|+|++++...
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 47899999999999999999999999999999998765 799999999999999999999999999999999998765
Q ss_pred cC
Q 015763 362 DK 363 (401)
Q Consensus 362 ~~ 363 (401)
..
T Consensus 87 r~ 88 (195)
T KOG0107|consen 87 RG 88 (195)
T ss_pred cc
Confidence 54
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6.7e-15 Score=123.03 Aligned_cols=80 Identities=26% Similarity=0.541 Sum_probs=77.1
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
..++|.|.||+.++++.+|+++|.+||.|.+|.|.+++.++ ||||||.|.+.++|.+||..|||+-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45789999999999999999999999999999999999887 9999999999999999999999999999999999999
Q ss_pred CC
Q 015763 359 PQ 360 (401)
Q Consensus 359 ~~ 360 (401)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 57
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.3e-14 Score=114.52 Aligned_cols=81 Identities=22% Similarity=0.501 Sum_probs=72.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|+|+|||.++.+.+|..+|-+||.|..|.|.... +..+||||+|+++-+|..||..-+|.-++|++|+|.|+..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 456899999999999999999999999999999885443 2258999999999999999999999999999999999987
Q ss_pred CC
Q 015763 360 QT 361 (401)
Q Consensus 360 ~~ 361 (401)
.+
T Consensus 83 gr 84 (241)
T KOG0105|consen 83 GR 84 (241)
T ss_pred CC
Confidence 65
No 58
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=1.1e-14 Score=118.55 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=77.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...+|.|-||.+-++.++|+.+|.+||.|.+|.|+.+..+. +|||||.|....+|+.|+.+|+|.+|+|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34789999999999999999999999999999999999877 9999999999999999999999999999999999998
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
-...
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 7665
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.9e-14 Score=102.10 Aligned_cols=70 Identities=49% Similarity=0.851 Sum_probs=65.1
Q ss_pred EEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 109 v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
|||+|||+++++++|+++|..||.|..+.+..++. +.++|+|||+|.+.++|.+|+..+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999988999999874
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=122.38 Aligned_cols=168 Identities=27% Similarity=0.444 Sum_probs=131.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccccc
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 187 (401)
.|||++||+.+.+.+|..||..||.|..+.+. .||+||+|.+..+|.-|+..|++..|.|-.+.|.++....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 59999999999999999999999999998885 5689999999999999999999999999888888776432
Q ss_pred ccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeec
Q 015763 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (401)
Q Consensus 188 ~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~ 267 (401)
.- . +.+.+ + .+.. +.
T Consensus 75 ~~----------------------------------~--g~~~~-g-------------------------~r~~---~~ 89 (216)
T KOG0106|consen 75 RG----------------------------------R--GRPRG-G-------------------------DRRS---DS 89 (216)
T ss_pred cc----------------------------------c--CCCCC-C-------------------------Cccc---hh
Confidence 10 0 00000 0 0000 00
Q ss_pred CCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCee
Q 015763 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (401)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i 347 (401)
. .......+.+.|+|.|++..+.+.+|..+|.++|.+..+.+ .++++||+|.+..+|.+|+..|++..+
T Consensus 90 ~-----~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 90 R-----RYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKKL 158 (216)
T ss_pred h-----ccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchhh
Confidence 0 00111144578999999999999999999999999966655 235899999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 015763 348 DGQVLEVVLAKP 359 (401)
Q Consensus 348 ~g~~l~v~~a~~ 359 (401)
.++.|.+.++..
T Consensus 159 ~~~~l~~~~~~~ 170 (216)
T KOG0106|consen 159 NGRRISVEKNSR 170 (216)
T ss_pred cCceeeecccCc
Confidence 999999955543
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.8e-14 Score=120.49 Aligned_cols=82 Identities=37% Similarity=0.590 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
+..+|.|.|||.++++.+|+.+|.+||.|.+|.+.+++.||.+||||||.|.+.++|.+||..|+|.-+..--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 015763 185 TK 186 (401)
Q Consensus 185 ~~ 186 (401)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 62
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=8.9e-15 Score=121.90 Aligned_cols=78 Identities=33% Similarity=0.681 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
-++|||++|+|.++.+.|+++|++||+|....++.|+.||++|||+||+|++.++|.+|++. .+-.|.||+..|.++.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 46799999999999999999999999999999999999999999999999999999999964 5567899998887764
No 63
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=2.4e-14 Score=132.56 Aligned_cols=81 Identities=16% Similarity=0.359 Sum_probs=75.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|+.||.|+.|+|+++..+. +|||||+|.+.++|.+|+..||+..|.+++|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 456899999999999999999999999999999999886544 899999999999999999999999999999999999
Q ss_pred cCC
Q 015763 358 KPQ 360 (401)
Q Consensus 358 ~~~ 360 (401)
++.
T Consensus 185 ~p~ 187 (346)
T TIGR01659 185 RPG 187 (346)
T ss_pred ccc
Confidence 764
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.9e-14 Score=122.46 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=71.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|..|+. |||..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 47999999999999999999999999999999998864 36899999999999999996 9999999999999998754
No 65
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.3e-14 Score=107.66 Aligned_cols=81 Identities=23% Similarity=0.384 Sum_probs=75.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..++||||+||.+.+++++|.++|++||.|..|.+-.++.+. =|||||+|-+.++|..|++-++|..++.++|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 445899999999999999999999999999999998887766 799999999999999999999999999999999998
Q ss_pred cCC
Q 015763 358 KPQ 360 (401)
Q Consensus 358 ~~~ 360 (401)
..=
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 653
No 66
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=9e-14 Score=119.52 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=77.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+-+||||.-|++.+++..|+..|+.||.|+.|+|+.++-++ +|||||+|...-+...|.+..+|.+|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 566899999999999999999999999999999999997655 999999999999999999999999999999999998
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
+....
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 76543
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=3.7e-14 Score=100.65 Aligned_cols=69 Identities=33% Similarity=0.654 Sum_probs=63.4
Q ss_pred EEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEE
Q 015763 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (401)
|+|+|||..+++++|+++|+.||.|..|.+..++.+. +++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987755 89999999999999999999999999999985
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.51 E-value=7.2e-14 Score=120.82 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.++|||+|||+.+++.+|++||+.||.|.+|.|+.+.. ++|||||+|.+.++|..|| .|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998753 5799999999999999999 5999999999999999764
No 69
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=2.2e-13 Score=124.45 Aligned_cols=167 Identities=35% Similarity=0.633 Sum_probs=121.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.++|||+|||+.+++++|+.+|.+||.|..+.+..++.+++++|||||.|.+.+.|..|+..+++..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999999753
Q ss_pred --ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 186 --KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 186 --~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
..+.....+ .. ..+....
T Consensus 195 ~~~~~~~~~~~-----------~~----------------------------------------~~~~~~~--------- 214 (306)
T COG0724 195 ASQPRSELSNN-----------LD----------------------------------------ASFAKKL--------- 214 (306)
T ss_pred ccccccccccc-----------cc----------------------------------------hhhhccc---------
Confidence 100000000 00 0000000
Q ss_pred eeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHH
Q 015763 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVK 340 (401)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~ 340 (401)
.............+++.|++..++...+...|..+|.+..+.+....... ..+.++.+.....+..++.
T Consensus 215 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 --------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred --------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00001111445689999999999999999999999999887777666543 2333344444444443333
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.50 E-value=8.8e-12 Score=110.42 Aligned_cols=236 Identities=18% Similarity=0.288 Sum_probs=180.6
Q ss_pred EcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC--CeEEEEEeccccc-
Q 015763 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRCSLSETKN- 187 (401)
Q Consensus 111 v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~~~- 187 (401)
|-|--+.+|.+-|..+....|+|.+|.|.+.. --.|.|+|.+.+.|++|...|||..|. ..+|+|.++++.+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 33555678999999999999999999887642 235999999999999999999998764 3567888876531
Q ss_pred --------------------------------------------------------------------------------
Q 015763 188 -------------------------------------------------------------------------------- 187 (401)
Q Consensus 188 -------------------------------------------------------------------------------- 187 (401)
T Consensus 202 nV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p 281 (494)
T KOG1456|consen 202 NVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASP 281 (494)
T ss_pred eeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCC
Confidence
Q ss_pred -------ccccCCCCCC-CCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCC
Q 015763 188 -------RLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (401)
Q Consensus 188 -------~l~v~~l~~~-~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 259 (401)
-+.|..|... ++-+.|-.+|..||- |..+.+++. ..|.|.|+..+....++|+..|++..+ .|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkT------k~gtamVemgd~~aver~v~hLnn~~l--fG 352 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKT------KPGTAMVEMGDAYAVERAVTHLNNIPL--FG 352 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeec------ccceeEEEcCcHHHHHHHHHHhccCcc--cc
Confidence 1233333332 566778899999997 999999885 467899999999999999999987655 56
Q ss_pred CCCeeeecCCCC--------CC-----------------------CCcccccccceEEEccCCCCCCHHHHHHHHhhcC-
Q 015763 260 NTPTISWADPKS--------TP-----------------------DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG- 307 (401)
Q Consensus 260 ~~~~v~~~~~~~--------~~-----------------------~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G- 307 (401)
.++.+..+...- .+ .......++++|..-|.|..+|++.|..+|...+
T Consensus 353 ~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v 432 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDV 432 (494)
T ss_pred ceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCC
Confidence 666555442220 00 0111234578999999999999999999998765
Q ss_pred CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCe------EEEEEeccCC
Q 015763 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ------VLEVVLAKPQ 360 (401)
Q Consensus 308 ~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~------~l~v~~a~~~ 360 (401)
...+|+|...+..+..-+.++|++..+|..||.+||...|.+. .|++.|++++
T Consensus 433 ~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 433 PPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 3568888888766566799999999999999999999999764 4777777665
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=2.5e-13 Score=98.13 Aligned_cols=81 Identities=25% Similarity=0.475 Sum_probs=73.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.-++.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||-|++..+|++|+..|+|..+.++.|.|-|..+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 34578999999999999999999999999999999777654 79999999999999999999999999999999999876
Q ss_pred CC
Q 015763 360 QT 361 (401)
Q Consensus 360 ~~ 361 (401)
..
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 43
No 72
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=4.2e-15 Score=118.50 Aligned_cols=83 Identities=30% Similarity=0.604 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.-.++.=|||+|||+.+|+.||...|++||.|..|.+++++.||+++||||+-|.++.+...|+..|||..|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ecc
Q 015763 182 LSE 184 (401)
Q Consensus 182 ~~~ 184 (401)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 653
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1e-13 Score=119.25 Aligned_cols=80 Identities=29% Similarity=0.496 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
.=+||||..|++++++..|+..|..||+|..|+|+++..||+++|||||+|....+...|.+..+|..|.|+.|.|.+..
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999998864
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1e-13 Score=104.14 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..++||||+||++-+++++|.++|+.+|+|..|.+--++.+..+-|||||+|-+.++|..|++.++++.+..+.|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 47899999999999999999999999999999999999998999999999999999999999999999999999999885
Q ss_pred c
Q 015763 184 E 184 (401)
Q Consensus 184 ~ 184 (401)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=2.3e-12 Score=116.20 Aligned_cols=174 Identities=19% Similarity=0.347 Sum_probs=144.6
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeee
Q 015763 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (401)
Q Consensus 186 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 265 (401)
.+.+||+|+|+.+..++|+.+|....-.|.++.+..| ..++++|++.|+|++++.+++|+..|+. +.+.++.+.|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEEe
Confidence 4559999999999999999999877666999999997 4789999999999999999999999965 56777777665
Q ss_pred ecCCC---------------------------------------------------------------------------
Q 015763 266 WADPK--------------------------------------------------------------------------- 270 (401)
Q Consensus 266 ~~~~~--------------------------------------------------------------------------- 270 (401)
-.+..
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 33221
Q ss_pred ----CCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCC
Q 015763 271 ----STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345 (401)
Q Consensus 271 ----~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~ 345 (401)
..+.+....+....+||.||.+.+....|++.|.-.|.|..|.+-.++.+. +|||.|+|..+-.|-+||.+|++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 000111122335789999999999999999999999999999998888888 999999999999999999999998
Q ss_pred eeCCeEEEEEeccCCCcC
Q 015763 346 EIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 346 ~i~g~~l~v~~a~~~~~~ 363 (401)
.+..++.++++.+-..+.
T Consensus 280 g~~~~~~~~Rl~~~~Drn 297 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRIPDRN 297 (608)
T ss_pred CCccccceeecccccccc
Confidence 889999999997665444
No 76
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.2e-13 Score=114.83 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
+.+.+|||+||++.+|+.+|++||+.||.|.+|+|+++ +..++||||+|.+++.|..|+ .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 46789999999999999999999999999999999988 455689999999999999999 89999999999999876
Q ss_pred cc
Q 015763 184 ET 185 (401)
Q Consensus 184 ~~ 185 (401)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 53
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=1.9e-13 Score=125.00 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCH--HHHHHHHHHhcCCccCCeEEEEEe
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK--EFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
...+|||+||++.+++++|+.+|..||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|+|..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45679999999999999999999999999999999 4467 99999999988 789999999999999999999999
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9864
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=3.1e-13 Score=123.59 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=71.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCH--HHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER--SSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~--~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...+|||+||++.+++++|+.+|+.||.|.+|.|++... ||||||+|.+. .++.+||..|||..|.|+.|+|..|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 346899999999999999999999999999999995443 89999999987 78999999999999999999999998
Q ss_pred C
Q 015763 359 P 359 (401)
Q Consensus 359 ~ 359 (401)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 7
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=1e-12 Score=93.34 Aligned_cols=72 Identities=28% Similarity=0.583 Sum_probs=66.6
Q ss_pred eEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
+|+|+|||..++.++|+.+|.+||.|..+.+.......+|+|||+|.+...|.+|+..+++..|.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999988773338999999999999999999999999999999873
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=7.9e-13 Score=95.57 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...+.|||+|||+.+|.+++.++|.+||.|.+|++-..+ ..+|.|||.|.+..+|++|+..|+|..+.++.|.|.+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 356789999999999999999999999999999996554 45999999999999999999999999999999999987
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.+.
T Consensus 93 q~~ 95 (124)
T KOG0114|consen 93 QPE 95 (124)
T ss_pred CHH
Confidence 654
No 81
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3.2e-13 Score=117.62 Aligned_cols=79 Identities=27% Similarity=0.491 Sum_probs=73.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
.-++|+|.|||+...+.||+.+|.+||.|.+|.|+.+. .-+|||+||+|.+.++|.+|...|||+.+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 44579999999999999999999999999999999886 4589999999999999999999999999999999999886
Q ss_pred c
Q 015763 185 T 185 (401)
Q Consensus 185 ~ 185 (401)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 5
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=9.6e-13 Score=93.45 Aligned_cols=72 Identities=46% Similarity=0.803 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
+|||+|||+.++..+|+.+|.+||.|..+.+..+. +.++|+|||+|.+...|.+|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 59999999999999999999999999999998776 7789999999999999999999999999999998873
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1e-12 Score=111.70 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=71.0
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
.+.+|+|+||++.+|+++|+++|+.||.|.+|+|+++.. .++||||+|.++.+|..|+. |+|..|.+++|.|..+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 457999999999999999999999999999999998843 36899999999999999996 9999999999999887643
No 84
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=8.7e-13 Score=110.12 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=74.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
-++|||++|+..+..+.|+++|.+||.|..+.|+.++.+. ||||||+|.+.++|.+|.+- -+-.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 3689999999999999999999999999999999998866 99999999999999999995 56789999999999988
Q ss_pred CCcCCC
Q 015763 360 QTDKKT 365 (401)
Q Consensus 360 ~~~~~~ 365 (401)
.++.+.
T Consensus 91 g~~pR~ 96 (247)
T KOG0149|consen 91 GGKPRP 96 (247)
T ss_pred cCccCC
Confidence 555443
No 85
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=5.1e-14 Score=136.84 Aligned_cols=235 Identities=17% Similarity=0.207 Sum_probs=191.2
Q ss_pred CCCCeEEEcCCCCCCCHH-HHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 104 PNGSEVFIGGLPKDASEE-DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~-~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
-..+...+.|+.+..... ..+..|+.+|.|..|++......-....++++.+....+++.|. ...+..+.++.+.|..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCC
Confidence 345567788888876665 57789999999999988763332233338899999999999998 5588888999988887
Q ss_pred cccc----------------cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHH
Q 015763 183 SETK----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (401)
Q Consensus 183 ~~~~----------------~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a 246 (401)
+.+. .++|++||+..+...+|+..|..++. +..+++... ...++.+|+||+.|..+..+.+|
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhh
Confidence 7653 36899999999999999999998886 666666532 45677889999999999988887
Q ss_pred HHHHhcCCcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeE
Q 015763 247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFG 325 (401)
Q Consensus 247 ~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~a 325 (401)
+.-....-+ ....|+|+|+|+..|.+.|+.+|.++|.+.+++++..+.+. +|.|
T Consensus 726 V~f~d~~~~-------------------------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a 780 (881)
T KOG0128|consen 726 VAFRDSCFF-------------------------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKA 780 (881)
T ss_pred hhhhhhhhh-------------------------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccce
Confidence 764433211 13579999999999999999999999999999999999988 9999
Q ss_pred EEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcCCCC
Q 015763 326 FIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366 (401)
Q Consensus 326 fV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~~~ 366 (401)
||.|.+..+|.+++....+..+.-+.+.|..+.+...++..
T Consensus 781 ~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~k~ 821 (881)
T KOG0128|consen 781 RVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKKKG 821 (881)
T ss_pred eccCCCcchhhhhcccchhhhhhhcCccccccCCccccccc
Confidence 99999999999999999999999999999998885554443
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.40 E-value=4.1e-13 Score=109.46 Aligned_cols=84 Identities=29% Similarity=0.464 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
...-++|.|-||-+-++.++|+.+|++||.|-.|.|.++..|+.++|||||.|....+|+.|+.+|.|..|.|+.|+|+.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
|.-.
T Consensus 90 aryg 93 (256)
T KOG4207|consen 90 ARYG 93 (256)
T ss_pred hhcC
Confidence 8643
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=7.7e-13 Score=105.22 Aligned_cols=76 Identities=29% Similarity=0.493 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
-.+.|||+||+..++..+|...|..||+|..|+|-.++ .|||||+|.++.+|..|+..|+|..|.|..|+|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36789999999999999999999999999999997754 7899999999999999999999999999999999876
Q ss_pred c
Q 015763 185 T 185 (401)
Q Consensus 185 ~ 185 (401)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 4
No 88
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.39 E-value=2.2e-12 Score=86.92 Aligned_cols=56 Identities=32% Similarity=0.554 Sum_probs=51.8
Q ss_pred HHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 299 l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
|+++|++||.|.+|.+.+.+ +++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998877 479999999999999999999999999999999996
No 89
>smart00360 RRM RNA recognition motif.
Probab=99.39 E-value=1.8e-12 Score=91.71 Aligned_cols=71 Identities=48% Similarity=0.863 Sum_probs=67.1
Q ss_pred EcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 111 v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
|+|||+.++.++|+.+|.+||.|..+.+..++.++.++|+|||+|.+.+.|.+|+..+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988889999999999999999999999999999999998873
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=4.9e-12 Score=90.27 Aligned_cols=73 Identities=30% Similarity=0.590 Sum_probs=68.3
Q ss_pred eEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
+|+|+|||..+++++|+++|+.||.|..+.+.....+. +|+|||+|.+.++|..|+..+++..++|++|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999877655 79999999999999999999999999999999875
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=9.4e-13 Score=99.87 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
.+-.|||.++...+|+++|.+.|..||+|.+|++--+..||..+|||+|+|.+.+.|++|+..+|+..|.|+.|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999985
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.8e-12 Score=98.38 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=77.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..+..|||.++-...++++|...|..||.|+.|.|..+..+. ||||+|+|.+..+|+.|+..|||..|-|..|.|.||
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 456899999999999999999999999999999999888776 999999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
-.++.
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 87644
No 93
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=7.6e-12 Score=89.25 Aligned_cols=74 Identities=47% Similarity=0.846 Sum_probs=68.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+|+|+|||+.+++++|+.+|+.||.|..+.+..++.+ .++|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987764 7799999999999999999999999999999998864
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-12 Score=107.88 Aligned_cols=86 Identities=27% Similarity=0.533 Sum_probs=79.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||++|...+++.-|...|=+||.|.+|.|+.+.... ||||||+|...++|..|+..||+..|.||.|+|.||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456899999999999999999999999999999999998766 999999999999999999999999999999999999
Q ss_pred cCCCcCCC
Q 015763 358 KPQTDKKT 365 (401)
Q Consensus 358 ~~~~~~~~ 365 (401)
+|...+..
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 99766544
No 95
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=5.8e-12 Score=89.02 Aligned_cols=69 Identities=32% Similarity=0.623 Sum_probs=63.4
Q ss_pred EccCCCCCCHHHHHHHHhhcCCeeEEEecCCCC-CC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 287 v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~-~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
|+|||..++.++|+.+|++||.|..+.+...+. +. +|+|||+|.+.++|..|+..|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999999999999999988765 23 8999999999999999999999999999999873
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.9e-12 Score=106.47 Aligned_cols=84 Identities=33% Similarity=0.602 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||++|...+++.-|...|-+||.|..|.+..+..+++.|||+||+|.-.++|..||..||...|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 97
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.31 E-value=6.1e-12 Score=100.80 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=75.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
....||||+||+..++++.|.++|-+.|+|.+++|++++-++ +|||||+|.+.++|.-|++-||..++-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 344799999999999999999999999999999999998776 899999999999999999999999999999999999
Q ss_pred c
Q 015763 358 K 358 (401)
Q Consensus 358 ~ 358 (401)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 8
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=3.9e-13 Score=107.39 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=73.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
+.-|||+|||+.+|+-+|.-+|++||.|..|.|++++.++ +||||+.|++.-+...|+..|||..|.||.|+|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 3579999999999999999999999999999999999877 99999999999999999999999999999999987644
No 99
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8.1e-11 Score=109.12 Aligned_cols=170 Identities=19% Similarity=0.341 Sum_probs=114.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCC--CCCcee---EEEEEecCHHHHHHHHHHhcCCccCCe
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE--SGESKG---FAFVSFRSKEFAKKAIDELHSKELKGK 176 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~--~g~~~g---~a~V~f~~~~~a~~a~~~l~~~~~~g~ 176 (401)
.+.-++.|||++||++++++.|...|..||.+..=...+... .-.++| |+|+.|.+...+..-|.+..- .-..-
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 445678899999999999999999999999764322211111 124566 999999999999888866543 11222
Q ss_pred EEEEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcc
Q 015763 177 TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (401)
Q Consensus 177 ~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 256 (401)
.+.|....-+.+ .|. |....+ .| ..+.
T Consensus 334 yf~vss~~~k~k-~VQ---------------------IrPW~l-aD------------------------------s~fv 360 (520)
T KOG0129|consen 334 YFKVSSPTIKDK-EVQ---------------------IRPWVL-AD------------------------------SDFV 360 (520)
T ss_pred EEEEecCccccc-cee---------------------EEeeEe-cc------------------------------chhh
Confidence 233332221111 000 111111 00 0000
Q ss_pred cCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHh-hcCCeeEEEecCCCC-CC-CCeEEEEeCCHH
Q 015763 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKS-GK-RDFGFIHYAERS 333 (401)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~-~~G~i~~v~i~~~~~-~~-kg~afV~f~~~~ 333 (401)
. ..+....+.+||||++||..++.++|-.+|. -||.|..|-|..|.. +. +|-|-|+|.+..
T Consensus 361 ~----------------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqq 424 (520)
T KOG0129|consen 361 L----------------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQ 424 (520)
T ss_pred h----------------ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccH
Confidence 0 0111226679999999999999999999999 599999999999944 44 999999999999
Q ss_pred HHHHHHHh
Q 015763 334 SALKAVKD 341 (401)
Q Consensus 334 ~A~~A~~~ 341 (401)
+-.+||.+
T Consensus 425 sYi~AIsa 432 (520)
T KOG0129|consen 425 AYIKAISA 432 (520)
T ss_pred HHHHHHhh
Confidence 99999985
No 100
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.28 E-value=2.3e-11 Score=113.53 Aligned_cols=82 Identities=21% Similarity=0.450 Sum_probs=69.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCC--CCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
.+|||.|||.+++..+|+++|.+||.|+...|..... +..+||||+|.+...+..||.+ +-..|++++|.|.--++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999777655442 2249999999999999999996 689999999999988876
Q ss_pred CcCCC
Q 015763 361 TDKKT 365 (401)
Q Consensus 361 ~~~~~ 365 (401)
.+...
T Consensus 368 ~~g~~ 372 (419)
T KOG0116|consen 368 FRGNG 372 (419)
T ss_pred ccccc
Confidence 55544
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.27 E-value=1.1e-11 Score=116.47 Aligned_cols=80 Identities=36% Similarity=0.720 Sum_probs=77.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (401)
+.|||+|+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|.+|++.||+..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998643
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.25 E-value=2.1e-11 Score=114.54 Aligned_cols=81 Identities=23% Similarity=0.450 Sum_probs=76.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
+.|||+|||+.+++++|..+|+..|.|..++++.|+.+. +||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 789999999999999999999999999999999998876 999999999999999999999999999999999999876
Q ss_pred CcC
Q 015763 361 TDK 363 (401)
Q Consensus 361 ~~~ 363 (401)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 554
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=4.3e-11 Score=84.49 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=50.9
Q ss_pred HHHHHHHHh----hcCCeeEEE-ecCCCC----CCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 296 TEKIKELFQ----RHGEVTKVV-MPPGKS----GKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 296 ~e~l~~~f~----~~G~i~~v~-i~~~~~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
+++|+++|+ +||.|.+|. |..++. ..+|||||+|.+.++|.+|+..|||+.|.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 467888888 999999985 444432 239999999999999999999999999999999873
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=5.3e-11 Score=84.02 Aligned_cols=62 Identities=23% Similarity=0.457 Sum_probs=55.7
Q ss_pred HHHHHHhhc----ccCCeeEEE-EeeCCCC--CCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 120 EEDLRDLCE----PIGDVFEVR-LMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 120 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
+++|+.+|+ +||.|..|. ++.++.+ ++++|||||.|.+.++|.+|+..|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 568899998 999999995 6666666 8999999999999999999999999999999999863
No 105
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=6.8e-11 Score=107.95 Aligned_cols=78 Identities=33% Similarity=0.646 Sum_probs=73.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCC-CC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~-~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.++|||+|||..+++++|..+|.+||.|..|.|..++. +. +|||||.|.+.++|..|+..+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999863 33 99999999999999999999999999999999999764
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=8e-11 Score=79.25 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=50.8
Q ss_pred HHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 123 l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
|+++|++||.|..+.+.... +++|||+|.+.++|.+|+..||+..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 589999999999999999999999999999999875
No 107
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.17 E-value=7.9e-11 Score=105.76 Aligned_cols=176 Identities=22% Similarity=0.345 Sum_probs=135.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..+++|++++.+.+...++..++..+|.+....+........++|++++.|...+.+..||.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57789999999999999999999999988888877777778999999999999999999995533234444443322211
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
... ++. .+..
T Consensus 167 ~~~--------------------------------~~~---~n~~----------------------------------- 176 (285)
T KOG4210|consen 167 RRG--------------------------------LRP---KNKL----------------------------------- 176 (285)
T ss_pred ccc--------------------------------ccc---cchh-----------------------------------
Confidence 100 000 0000
Q ss_pred eecCCCCCCCCcccccccceE-EEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHh
Q 015763 265 SWADPKSTPDHSAAASQVKAL-YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l-~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~ 341 (401)
.........++ ++.||++.++.++|+.+|..+|.|..|+++....+. +|||||.|.+...+..++..
T Consensus 177 ----------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 177 ----------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred ----------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 00000122344 499999999999999999999999999999998877 99999999999999999997
Q ss_pred hcCCeeCCeEEEEEeccCCC
Q 015763 342 TEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~~ 361 (401)
....+.++++.|.+..+..
T Consensus 247 -~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred -ccCcccCcccccccCCCCc
Confidence 8999999999999988753
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.16 E-value=1.6e-10 Score=108.11 Aligned_cols=72 Identities=26% Similarity=0.487 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
....++|+|-|||..++..+|+.+|..||+|..|+..+. .+|.+||+|-+...|+.|++.|++..+.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 346789999999999999999999999999999776544 478999999999999999999999999999887
No 109
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.12 E-value=2.5e-10 Score=93.78 Aligned_cols=86 Identities=27% Similarity=0.465 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccc-CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
+.......++|..+|..+-+.+|..+|.+| |.|..+++.+++.||.++|||||+|.+++.|..|-+.||+..|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344456679999999999999999999998 6888999999999999999999999999999999999999999999999
Q ss_pred EEecccc
Q 015763 180 CSLSETK 186 (401)
Q Consensus 180 v~~~~~~ 186 (401)
|.+..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9887654
No 110
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.10 E-value=9e-10 Score=105.15 Aligned_cols=166 Identities=13% Similarity=0.072 Sum_probs=112.0
Q ss_pred cccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee----
Q 015763 189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI---- 264 (401)
Q Consensus 189 l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v---- 264 (401)
+.++.++++....+++++|...- +....+..+ .......|-++|.|.....+.+|++.- ....-.|.+.+
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn---~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRN---PSDDVNRPFQTGPPG 387 (944)
T ss_pred eeecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcC---chhhhhcceeecCCC
Confidence 34456677777778888876443 444444443 222334788999999999999997542 11111111111
Q ss_pred -----------------------------eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeE-EEe
Q 015763 265 -----------------------------SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVM 314 (401)
Q Consensus 265 -----------------------------~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~-v~i 314 (401)
..+....-.........+.+|||..||..++...+.++|...-.|.+ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 00000001111222234689999999999999999999998767766 888
Q ss_pred cCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 315 PPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 315 ~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
.+..... ++.|||.|..+..+..|+..-+.+.++.|.|+|.-....
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 8777766 899999999999999998877888889999999866543
No 111
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.1e-10 Score=99.10 Aligned_cols=86 Identities=27% Similarity=0.515 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.-++++.|||-.||....+.+|..+|-+||.|.+.++..|+.|..+|+|+||-|.++-+|+.||..|||..|.=++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
+-+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 876653
No 112
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.09 E-value=3.8e-10 Score=94.32 Aligned_cols=80 Identities=20% Similarity=0.425 Sum_probs=71.8
Q ss_pred cceEEEccCCCCCCHHHHHH----HHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 282 VKALYVKNIPDNTSTEKIKE----LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~----~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..||||.||+..+..++|+. +|++||.|.+|...+... -+|-|||.|.+...|-.|+++|+|+.|-|+.+++.||
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K-mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK-MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC-ccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 34999999999999999988 999999999998875542 2799999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
..+..
T Consensus 88 ~s~sd 92 (221)
T KOG4206|consen 88 KSDSD 92 (221)
T ss_pred cCccc
Confidence 87543
No 113
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.07 E-value=3e-10 Score=97.71 Aligned_cols=74 Identities=22% Similarity=0.562 Sum_probs=69.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
..|||+|||..+++.+|+.+|++||+|..+.|+++ ||||..++...|..|++.|||.+|+|..|.|.-++.+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 36999999999999999999999999999999886 799999999999999999999999999999999998843
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.3e-10 Score=99.15 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=77.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
++-+.|||+.|.+-++.++|.-+|+.||.|..+.|+++..+. -.||||+|.+.++..+|+=+|++..|+.++|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 556899999999999999999999999999999999998876 789999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
.+.+.
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 77554
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.2e-10 Score=98.68 Aligned_cols=85 Identities=21% Similarity=0.452 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
..++...|||..|.+-+|.++|.-+|+.||.|.+|.++++..||.+..||||+|.+.+++.+|+=.|.+..|..+.|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 015763 182 LSETK 186 (401)
Q Consensus 182 ~~~~~ 186 (401)
++.+-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 87653
No 116
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.01 E-value=1.1e-09 Score=102.31 Aligned_cols=83 Identities=24% Similarity=0.491 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
...++.|||.+|+..+...+|+++|++||.|+-.+++.+..+--.++|+||++.+..+|.+||..||.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34678999999999999999999999999999999999999888999999999999999999999999999999999988
Q ss_pred ccc
Q 015763 183 SET 185 (401)
Q Consensus 183 ~~~ 185 (401)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 763
No 117
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.99 E-value=1e-08 Score=98.10 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=66.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCe-eEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i-~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
+.|.+.|+|+.++-++|.++|..|-.+ .+|+|..+..+. .|-|.|.|++.+.|.+|+..|++..|..|.|+|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 478999999999999999999999655 477887777776 89999999999999999999999999999999864
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.1e-09 Score=100.59 Aligned_cols=162 Identities=24% Similarity=0.436 Sum_probs=124.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
-....|||++||..+++.++++++..||++....++.+..+|.++||||-+|.++-....|+..|||..+.++.|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccc----------ccCCCCCC-----------------CCH-------------HHHHHHHHhhCCceeEEEEeeC-
Q 015763 184 ETKNRL----------FIGNVPKN-----------------WTE-------------DEFRKVIEDVGPGVETIELIKD- 222 (401)
Q Consensus 184 ~~~~~l----------~v~~l~~~-----------------~~~-------------~~l~~~f~~~g~~v~~~~~~~~- 222 (401)
-..... -|..|+.. ++. ++++.-+..||. |..|.+.+.
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~~ 445 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRPY 445 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCCC
Confidence 543211 11111111 122 334445567786 777777765
Q ss_pred C-CCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecC
Q 015763 223 P-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268 (401)
Q Consensus 223 ~-~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~ 268 (401)
. .......|-.||+|.+.+++++|+..|.+.+ +.++.+-..|.+
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK--F~nRtVvtsYyd 490 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRK--FANRTVVASYYD 490 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCce--eCCcEEEEEecC
Confidence 2 2234567889999999999999999998764 345555444443
No 119
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.98 E-value=7.8e-09 Score=85.76 Aligned_cols=86 Identities=24% Similarity=0.443 Sum_probs=72.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCC-CCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeC---CeEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGK--RDFGFIHYAERSSALKAVKDTEKYEID---GQVLE 353 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~-~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~ 353 (401)
...+||||.+||.++...+|..+|..|-......|... +.++ +.+|||.|.+...|..|+.+|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999876665555433 3333 789999999999999999999999997 89999
Q ss_pred EEeccCCCcCCC
Q 015763 354 VVLAKPQTDKKT 365 (401)
Q Consensus 354 v~~a~~~~~~~~ 365 (401)
|.+|++......
T Consensus 112 iElAKSNtK~kr 123 (284)
T KOG1457|consen 112 IELAKSNTKRKR 123 (284)
T ss_pred eeehhcCccccc
Confidence 999998765443
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=2.2e-10 Score=94.60 Aligned_cols=147 Identities=22% Similarity=0.359 Sum_probs=118.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
+.+...+||||.||-..++++-|.++|-+.|+|..|.|...+. ++.+ ||||.|++.-++.-|+..+||..+.++.+.|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 3445678999999999999999999999999999999988776 6666 9999999999999999999998888877765
Q ss_pred EecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCC
Q 015763 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260 (401)
Q Consensus 181 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 260 (401)
.+
T Consensus 82 ~~------------------------------------------------------------------------------ 83 (267)
T KOG4454|consen 82 TL------------------------------------------------------------------------------ 83 (267)
T ss_pred cc------------------------------------------------------------------------------
Confidence 43
Q ss_pred CCeeeecCCCCCCCCcccccccceEEEcc----CCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHH
Q 015763 261 TPTISWADPKSTPDHSAAASQVKALYVKN----IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSA 335 (401)
Q Consensus 261 ~~~v~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A 335 (401)
+.+| |...++.+.+...|+.-|++..+++..+.++. +.++|+.+.-..+.
T Consensus 84 -------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 84 -------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred -------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcC
Confidence 2222 34556777788889999999999999988876 88999998877777
Q ss_pred HHHHHhhcCCeeCCeEE
Q 015763 336 LKAVKDTEKYEIDGQVL 352 (401)
Q Consensus 336 ~~A~~~l~g~~i~g~~l 352 (401)
-.++....++...-+++
T Consensus 139 P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 139 PFALDLYQGLELFQKKV 155 (267)
T ss_pred cHHhhhhcccCcCCCCc
Confidence 77777666554444433
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=4.4e-09 Score=92.94 Aligned_cols=75 Identities=27% Similarity=0.527 Sum_probs=68.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh-hcCCeeCCeEEEEEeccC
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD-TEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~-l~g~~i~g~~l~v~~a~~ 359 (401)
...+|||++|-..+++.+|+++|-+||.|..|++...+ +.|||+|.+..+|..|..+ +|...|+|++|+|.|.++
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45899999998899999999999999999999998877 6999999999999877766 477888999999999999
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.94 E-value=2.3e-09 Score=103.78 Aligned_cols=79 Identities=23% Similarity=0.492 Sum_probs=75.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
++||+|+.|+..+++.+|.++|+.||.|.+|.+.... |+|||.+....+|.+|+.+|++..+.++.|+|.||..++
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 6899999999999999999999999999999997765 899999999999999999999999999999999999988
Q ss_pred cCC
Q 015763 362 DKK 364 (401)
Q Consensus 362 ~~~ 364 (401)
.+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 876
No 123
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=2.7e-09 Score=105.04 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=132.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
+....+|||++||+..+++.+|+..|..+|.|..|.|.+-.. +.-.-|+||.|.+...+..|...+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 444788999999999999999999999999999998866543 5556689999999999988887766554432222111
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
+...
T Consensus 447 lG~~---------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 447 LGQP---------------------------------------------------------------------------- 450 (975)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1100
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
.....+.+++++|+.-+....|...|..||.|..|.+.... .||+|.|.+...|+.|++.
T Consensus 451 ----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 451 ----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHH
Confidence 00334689999999999999999999999999999887666 5999999999999999999
Q ss_pred hcCCeeCC--eEEEEEeccCCCcC
Q 015763 342 TEKYEIDG--QVLEVVLAKPQTDK 363 (401)
Q Consensus 342 l~g~~i~g--~~l~v~~a~~~~~~ 363 (401)
|.|..|+| ++|+|.||......
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCC
Confidence 99999985 77999999876543
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.90 E-value=3e-09 Score=94.92 Aligned_cols=144 Identities=22% Similarity=0.317 Sum_probs=112.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccc----CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE---
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI--- 178 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l--- 178 (401)
.-.|.+++||+++++.++..||.+- |....|.+++.++ |+..|-|||.|..++.|+.||.. |...+.-|.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3468889999999999999999642 2456777777665 99999999999999999999965 4433332222
Q ss_pred ----------------------------------EEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeE--EEEeeC
Q 015763 179 ----------------------------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET--IELIKD 222 (401)
Q Consensus 179 ----------------------------------~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~--~~~~~~ 222 (401)
.|-...++..+.+++||+..+-++|..+|..|-..+.. +.++.
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~- 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL- 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE-
Confidence 22223345678999999999999999999999776666 56665
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHHHhcC
Q 015763 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (401)
Q Consensus 223 ~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 253 (401)
+..++..|-|||+|.+.+.|..|.+.-.++
T Consensus 318 -N~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 318 -NGQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -cCCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 567889999999999999998888776554
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.88 E-value=1.4e-08 Score=75.04 Aligned_cols=80 Identities=19% Similarity=0.371 Sum_probs=70.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhc--CCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeC----CeEEEE
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID----GQVLEV 354 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~--G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~----g~~l~v 354 (401)
+||+|+|||..+|.++|.+++..+ |....+.++.+-.+. .|||||.|.+++.|.+-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998763 677788888886655 999999999999999999999999885 678999
Q ss_pred EeccCCCc
Q 015763 355 VLAKPQTD 362 (401)
Q Consensus 355 ~~a~~~~~ 362 (401)
.||+-++.
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99987654
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.87 E-value=8.6e-09 Score=84.83 Aligned_cols=81 Identities=21% Similarity=0.401 Sum_probs=73.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhc-CCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~-G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
.....++|..+|..+.+.+|..+|.+| |.|..+++-+++.++ ||||||+|.+.+.|.-|...||+..|.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 444678999999999999999999998 788899997776654 99999999999999999999999999999999999
Q ss_pred ccCC
Q 015763 357 AKPQ 360 (401)
Q Consensus 357 a~~~ 360 (401)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8876
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=3.7e-08 Score=85.29 Aligned_cols=82 Identities=22% Similarity=0.410 Sum_probs=76.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
..+|.|.|||+.++.++|+++|..||.++.|.|-.++.+. .|.|-|.|...++|.+|++.+||..++|++|++....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 3689999999999999999999999999999999999888 899999999999999999999999999999999988776
Q ss_pred CcC
Q 015763 361 TDK 363 (401)
Q Consensus 361 ~~~ 363 (401)
...
T Consensus 163 ~~~ 165 (243)
T KOG0533|consen 163 SQS 165 (243)
T ss_pred ccc
Confidence 554
No 128
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.85 E-value=6e-09 Score=100.98 Aligned_cols=77 Identities=29% Similarity=0.553 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..+|||||+.|+..+++.+|..+|+.||.|.+|.++.. +|+|||.+....+|.+|+.+|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 37899999999999999999999999999999999654 889999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
..+
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 754
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=3.5e-10 Score=110.61 Aligned_cols=137 Identities=25% Similarity=0.297 Sum_probs=116.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
...++||+||++.+.+.+|...|..+|.+..+++..+...++.+|+|||.|..++++.+|+....++. .|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hh---------
Confidence 45579999999999999999999999988888877777789999999999999999999996544443 33
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCc
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~ 255 (401)
+..++|.++|+..|.+.++.++..+|. +..++++. ...++.+|.++|.|.+...+.++........+
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt--~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVT--VRAGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhh--hhccccccceeccCCCcchhhhhcccchhhhh
Confidence 678999999999999999999999997 77777665 45788999999999999999888776554433
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.84 E-value=1.2e-08 Score=95.50 Aligned_cols=80 Identities=23% Similarity=0.430 Sum_probs=73.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..++.|+|++|...+...+|+.+|++||.|+-.+++.+..+. ++|+||+|.+.++|.+||..||...|.|+.|.|..|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 456899999999999999999999999999988888776554 999999999999999999999999999999999999
Q ss_pred cC
Q 015763 358 KP 359 (401)
Q Consensus 358 ~~ 359 (401)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 75
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=8.9e-09 Score=91.04 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=69.5
Q ss_pred cCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHh-cCCccCCeEE
Q 015763 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTI 178 (401)
Q Consensus 100 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~g~~l 178 (401)
++.+...++|||++|-..+++.+|+++|-+||.|..|.++.. +++|||+|.+..+|.+|...+ +...++|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 344456789999999999999999999999999999999865 559999999999999997654 4456799999
Q ss_pred EEEeccc
Q 015763 179 RCSLSET 185 (401)
Q Consensus 179 ~v~~~~~ 185 (401)
.|.|..+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999987
No 132
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.81 E-value=1.4e-08 Score=91.50 Aligned_cols=83 Identities=33% Similarity=0.606 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
....|||++||.++++.+++.+|.+||.|..+.++.+..+.+++||+||.|.+.+.+.+++ ..+-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 3457999999999999999999999999999999999999999999999999999999999 558889999999999988
Q ss_pred cccc
Q 015763 185 TKNR 188 (401)
Q Consensus 185 ~~~~ 188 (401)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7643
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.81 E-value=1.2e-09 Score=97.58 Aligned_cols=212 Identities=15% Similarity=0.203 Sum_probs=132.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCC---CCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..|-|.||.+.+|.++|+.||...|.|..+.++.+... ......|||.|.+...+..|- .|.++++-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 37999999999999999999999999999998874421 235668999999999999887 78888888888877654
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEE-EEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCC
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETI-ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~-~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 262 (401)
... +.... .+|..++. -..+ .+... .| |.+.+ ..+...+...
T Consensus 87 ~~~-----------~~p~r--~af~~l~~-~navprll~p-------dg---~Lp~~-------------~~lt~~nh~p 129 (479)
T KOG4676|consen 87 GDE-----------VIPDR--FAFVELAD-QNAVPRLLPP-------DG---VLPGD-------------RPLTKINHSP 129 (479)
T ss_pred CCC-----------CCccH--HHHHhcCc-ccccccccCC-------CC---ccCCC-------------CccccccCCc
Confidence 321 11111 13433332 0000 00000 00 00000 0010111111
Q ss_pred eeeecCCCCCCCC--cccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHH
Q 015763 263 TISWADPKSTPDH--SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (401)
Q Consensus 263 ~v~~~~~~~~~~~--~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~ 340 (401)
..-+-.|.+.+.. .......++|+|++|+..+...++.+.|..+|.|.+.++.-... ..+|.|.|....+...|+.
T Consensus 130 ~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr 207 (479)
T KOG4676|consen 130 NAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALR 207 (479)
T ss_pred cceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHHH
Confidence 1111112222111 11112247899999999999999999999999998887755443 3678899999999999998
Q ss_pred hhcCCeeCCeEEEEEeccC
Q 015763 341 DTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 341 ~l~g~~i~g~~l~v~~a~~ 359 (401)
++|+.+.-...++..-+|
T Consensus 208 -~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 208 -SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred -hcchhhhhhhhhhhhcCc
Confidence 477777643333333333
No 134
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.73 E-value=1.1e-07 Score=70.46 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccc--CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC----CeEEE
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK----GKTIR 179 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~----g~~l~ 179 (401)
.+||+|+|||...|...|.+++... |...-+.++.|..++.+.|||||.|.+++.|.+..+..+|..|. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3789999999999999999888543 56677788888889999999999999999999999999999885 45566
Q ss_pred EEecc
Q 015763 180 CSLSE 184 (401)
Q Consensus 180 v~~~~ 184 (401)
|.+|.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 76665
No 135
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=1.6e-08 Score=85.71 Aligned_cols=173 Identities=14% Similarity=0.270 Sum_probs=122.6
Q ss_pred CCCCeEEEcCCCCCCCHHH-H--HHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 104 PNGSEVFIGGLPKDASEED-L--RDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~-l--~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
+.-...|+.++-..+..+- | ...|.-|-.+....++++.. +..++++|+.|+......++-..-+++.+.-+.|++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3444567777666655544 3 56677776666666776654 778899999999777776666444443333333222
Q ss_pred EecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCC
Q 015763 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260 (401)
Q Consensus 181 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 260 (401)
.....
T Consensus 173 a~gts--------------------------------------------------------------------------- 177 (290)
T KOG0226|consen 173 AAGTS--------------------------------------------------------------------------- 177 (290)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 21111
Q ss_pred CCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHH
Q 015763 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (401)
Q Consensus 261 ~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A 338 (401)
|-+|.... -.....+||++-|...++.+.|-..|.+|-.....++++++.+. +||+||.|.++.++.+|
T Consensus 178 -----wedPsl~e----w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 178 -----WEDPSLAE----WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred -----cCCccccc----CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 11111110 00233689999999999999999999999988888888887765 99999999999999999
Q ss_pred HHhhcCCeeCCeEEEEEeccCCC
Q 015763 339 VKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 339 ~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
++.|+|..++.++|+++-+.-+.
T Consensus 249 mrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred HHhhcccccccchhHhhhhhHHh
Confidence 99999999999999998776554
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.65 E-value=1.9e-07 Score=65.46 Aligned_cols=72 Identities=24% Similarity=0.393 Sum_probs=48.9
Q ss_pred ceEEEccCCCCCCHHHH----HHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 283 KALYVKNIPDNTSTEKI----KELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l----~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..|+|.|||...+...| ++++..|| .|..|. . +.|+|.|.+++.|.+|.+.|+|..+.|++|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----~----~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----G----GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------T----T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----C----CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 46899999999988765 56666886 666663 1 57999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
+..+.
T Consensus 75 ~~~r~ 79 (90)
T PF11608_consen 75 PKNRE 79 (90)
T ss_dssp --S--
T ss_pred CCccc
Confidence 76544
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.63 E-value=1.1e-07 Score=84.26 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=74.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCee--------EEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEE
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~--------~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 352 (401)
++.|||+|||.++|.+++.++|++||.|. .|.|.++..|. ||=|++.|-..++...|++.|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 45699999999999999999999999886 58899999888 9999999999999999999999999999999
Q ss_pred EEEeccCCCc
Q 015763 353 EVVLAKPQTD 362 (401)
Q Consensus 353 ~v~~a~~~~~ 362 (401)
+|+.|+=...
T Consensus 214 rVerAkfq~K 223 (382)
T KOG1548|consen 214 RVERAKFQMK 223 (382)
T ss_pred EEehhhhhhc
Confidence 9999975433
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.63 E-value=5.8e-08 Score=84.42 Aligned_cols=81 Identities=30% Similarity=0.455 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...+.|||+|+.+.+|..++..+|+.||.|..+.+..++.++.++||+||+|.+.+.+..++. |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 466789999999999999999999999999999999999999999999999999999999996 9999999999998876
Q ss_pred cc
Q 015763 184 ET 185 (401)
Q Consensus 184 ~~ 185 (401)
..
T Consensus 178 r~ 179 (231)
T KOG4209|consen 178 RT 179 (231)
T ss_pred ee
Confidence 53
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.61 E-value=7.5e-08 Score=90.27 Aligned_cols=78 Identities=23% Similarity=0.470 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...+|||+|||++++..+|+++|++||.|....|......++..+||||+|.+..+++.||.+ +...+.+++|.|..-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 345699999999999999999999999999888866554455569999999999999999966 688889999998764
No 140
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=7.1e-08 Score=81.69 Aligned_cols=76 Identities=22% Similarity=0.440 Sum_probs=69.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
..+||++||+.+.+.+|..+|..||.|..|.+.. ||+||+|.+.-+|..|+..||+..|.|-++.|.|++..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 3689999999999999999999999999998844 6899999999999999999999999999999999998765
Q ss_pred CC
Q 015763 363 KK 364 (401)
Q Consensus 363 ~~ 364 (401)
..
T Consensus 76 ~~ 77 (216)
T KOG0106|consen 76 GR 77 (216)
T ss_pred cc
Confidence 54
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=1.6e-07 Score=81.44 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
.-.++|+|.|||+.++..||+++|..||.+..+.+-.++ .|++.|.|-|.|...++|.+|++.+++..+.|+.|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999977777665554 5999999999999999999999999999999999988776
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.+.
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.60 E-value=9.9e-09 Score=92.75 Aligned_cols=156 Identities=21% Similarity=0.323 Sum_probs=119.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCCeEEEEEecccc
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRCSLSETK 186 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~~~ 186 (401)
.+|++||.+.++..+|..+|...-.-.+-.++ ...||+||.+.+...|.+|++.+++.. +.|+.+.|..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 48999999999999999999754211111111 126799999999999999999998865 77887776654332
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeee
Q 015763 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (401)
Q Consensus 187 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 266 (401)
.
T Consensus 77 k------------------------------------------------------------------------------- 77 (584)
T KOG2193|consen 77 K------------------------------------------------------------------------------- 77 (584)
T ss_pred H-------------------------------------------------------------------------------
Confidence 1
Q ss_pred cCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCe
Q 015763 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (401)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~ 346 (401)
..++.+.|.|+|+..-++.|-.++..||.+..+..+..... .-..-|+|.+.+.++.|+..|+|..
T Consensus 78 -------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e-tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 78 -------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE-TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred -------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH-HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 11245889999999999999999999999998866443321 1234578999999999999999999
Q ss_pred eCCeEEEEEeccCCCc
Q 015763 347 IDGQVLEVVLAKPQTD 362 (401)
Q Consensus 347 i~g~~l~v~~a~~~~~ 362 (401)
+....++|.|-.-...
T Consensus 144 ~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 144 LENQHLKVGYIPDEQN 159 (584)
T ss_pred hhhhhhhcccCchhhh
Confidence 9999999999865433
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=8.3e-08 Score=90.26 Aligned_cols=71 Identities=24% Similarity=0.432 Sum_probs=66.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (401)
.+..+|+|.|||..++.++|+.+|+.||.|+.|+.-+.+. |++||+|-+.-+|++|++.|++..|.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~---~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR---GIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC---ceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 5568999999999999999999999999999988766664 7999999999999999999999999999999
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.59 E-value=1.5e-07 Score=81.88 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=74.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...+.++|+|+.+.++.+++...|+.||.|..|.|+.++... |||+||+|.+.+.+..|+. |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345789999999999999999999999999999999998875 9999999999999999999 9999999999999998
Q ss_pred cCC
Q 015763 358 KPQ 360 (401)
Q Consensus 358 ~~~ 360 (401)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 876
No 145
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=9.7e-08 Score=79.17 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=73.6
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
..+||||.|+...++++.|.++|-+.|+|.+|.|+.++.+.-.||||.|.+..+..-|+..+||..+.++.|.+.+-...
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 34799999999999999999999999999999999999988339999999999999999999999999999988887554
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.47 E-value=8.3e-07 Score=62.33 Aligned_cols=70 Identities=26% Similarity=0.528 Sum_probs=48.6
Q ss_pred CeEEEcCCCCCCCHHHHH----HhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 107 SEVFIGGLPKDASEEDLR----DLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~----~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
+.|+|.|||.+.....|+ .++..|| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999988765 4555787 665541 3579999999999999999999999999999999
Q ss_pred ecccc
Q 015763 182 LSETK 186 (401)
Q Consensus 182 ~~~~~ 186 (401)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 97544
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.43 E-value=2e-07 Score=79.19 Aligned_cols=84 Identities=25% Similarity=0.434 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
-+....+||.+.|..+++.+.|...|++|-.-...+++++++||+++||+||-|.+..++..|+..|+|..++.+.|.++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34467789999999999999999999999988899999999999999999999999999999999999999999998877
Q ss_pred eccc
Q 015763 182 LSET 185 (401)
Q Consensus 182 ~~~~ 185 (401)
.+..
T Consensus 266 kS~w 269 (290)
T KOG0226|consen 266 KSEW 269 (290)
T ss_pred hhhH
Confidence 6544
No 148
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.41 E-value=1.7e-07 Score=79.76 Aligned_cols=73 Identities=26% Similarity=0.403 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCC--------CCcee----EEEEEecCHHHHHHHHHHhcCCc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------GESKG----FAFVSFRSKEFAKKAIDELHSKE 172 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~--------g~~~g----~a~V~f~~~~~a~~a~~~l~~~~ 172 (401)
....||+.+||+.+...-|+++|..||.|-+|.+.+...+ |.+++ -+||+|.+...|+++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999998776554 33332 38899999999999999999999
Q ss_pred cCCeE
Q 015763 173 LKGKT 177 (401)
Q Consensus 173 ~~g~~ 177 (401)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99886
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.36 E-value=1.2e-06 Score=78.49 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=73.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCee--------EEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~--------~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
....+|||.+||..++..+|..+|.+||.|. .|.|-+++.+. |+-|.|.|.++..|+.|+..+++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4457899999999999999999999999886 36666777655 8999999999999999999999999999
Q ss_pred eEEEEEeccCCC
Q 015763 350 QVLEVVLAKPQT 361 (401)
Q Consensus 350 ~~l~v~~a~~~~ 361 (401)
.+|+|.+|....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999998765
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.26 E-value=2.3e-06 Score=65.01 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=46.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcC-----CeeCCeEEEEEec
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-----YEIDGQVLEVVLA 357 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g-----~~i~g~~l~v~~a 357 (401)
+.|.|.+++..++.++|+..|++||.|.+|.+.+... .|||.|.+.+.|+.|+.++.- ..|.+..+++..-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 5789999999999999999999999999999988764 699999999999999998753 4666766666543
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.23 E-value=2.1e-06 Score=82.91 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=73.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC----C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~----~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
+.++.|||+||++.+++..|...|..||+|..|+|...... + +-+|||.|-+..+|.+|++.|+|..+-+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45688999999999999999999999999999988755431 1 679999999999999999999999999999999
Q ss_pred EeccCCC
Q 015763 355 VLAKPQT 361 (401)
Q Consensus 355 ~~a~~~~ 361 (401)
-|++...
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 9997643
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.17 E-value=3.8e-06 Score=81.21 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCC---CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK---ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~---~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
.+..+.|||+||++.+++..|...|..||+|..++|.--. ...+.+-++||.|.+..+|.+|++.|+|..+.+..|+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3467789999999999999999999999999999886432 2345677899999999999999999999999999999
Q ss_pred EEecc
Q 015763 180 CSLSE 184 (401)
Q Consensus 180 v~~~~ 184 (401)
+-|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99974
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=1.2e-05 Score=61.10 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=39.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~ 171 (401)
++.|+|.+++..++-++|+.+|++||.|..|.+.+.. ..|||.|.+.+.|++|+..+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 3578999999999999999999999999999887643 27999999999999999887654
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.97 E-value=1.6e-05 Score=70.29 Aligned_cols=90 Identities=19% Similarity=0.398 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHH------HHhhcccCCeeEEEEeeCCCCCC-cee--EEEEEecCHHHHHHHHHHhcCCccCC
Q 015763 105 NGSEVFIGGLPKDASEEDL------RDLCEPIGDVFEVRLMKDKESGE-SKG--FAFVSFRSKEFAKKAIDELHSKELKG 175 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l------~~~f~~~g~i~~~~~~~~~~~g~-~~g--~a~V~f~~~~~a~~a~~~l~~~~~~g 175 (401)
...-|||-+||+.+..+++ .++|.+||.|..|.+-+...+.. ..+ -.||.|.+.++|.+||....|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3446899999999877762 26999999999887755432111 122 24999999999999999999999999
Q ss_pred eEEEEEecccc-cccccCCC
Q 015763 176 KTIRCSLSETK-NRLFIGNV 194 (401)
Q Consensus 176 ~~l~v~~~~~~-~~l~v~~l 194 (401)
|.|+..+...+ ++.|++|+
T Consensus 193 r~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 193 RVLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred ceEeeecCchHHHHHHHcCC
Confidence 99999997765 34444443
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.89 E-value=1.3e-05 Score=71.96 Aligned_cols=84 Identities=32% Similarity=0.510 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCee--------EEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g 175 (401)
....+|||.+||..++..+|..+|.+||.|. .|.+.+++.|+++||-|.|.|.+...|+.|+.-+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3556799999999999999999999999773 47788899999999999999999999999999999999999
Q ss_pred eEEEEEeccccc
Q 015763 176 KTIRCSLSETKN 187 (401)
Q Consensus 176 ~~l~v~~~~~~~ 187 (401)
..|.|..+....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998876543
No 156
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.84 E-value=1.1e-05 Score=68.86 Aligned_cols=70 Identities=20% Similarity=0.428 Sum_probs=61.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC----------C--CC--eEEEEeCCHHHHHHHHHhhcCCee
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----------K--RD--FGFIHYAERSSALKAVKDTEKYEI 347 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~----------~--kg--~afV~f~~~~~A~~A~~~l~g~~i 347 (401)
.-.||++|||+.+....|+++|+.||.|-+|.|.+.... + .- -|.|+|.+.-.|.++...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999999776433 1 11 289999999999999999999999
Q ss_pred CCeE
Q 015763 348 DGQV 351 (401)
Q Consensus 348 ~g~~ 351 (401)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9975
No 157
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=6.6e-05 Score=71.08 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=62.9
Q ss_pred ceEEEccCCCCCCH------HHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeC-CeEEEE
Q 015763 283 KALYVKNIPDNTST------EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID-GQVLEV 354 (401)
Q Consensus 283 ~~l~v~nlp~~~t~------e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v 354 (401)
.+|+|-|+|.--.. .-|..+|+++|+|..+.++.+..++ +||.|++|++..+|..|++.|||..|+ .+++.|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 68999999943322 2457889999999999999888877 999999999999999999999999986 566666
Q ss_pred Eec
Q 015763 355 VLA 357 (401)
Q Consensus 355 ~~a 357 (401)
..-
T Consensus 139 ~~f 141 (698)
T KOG2314|consen 139 RLF 141 (698)
T ss_pred ehh
Confidence 544
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.82 E-value=5e-05 Score=67.27 Aligned_cols=79 Identities=24% Similarity=0.488 Sum_probs=64.5
Q ss_pred ccceEEEccCCCCCCHHHH------HHHHhhcCCeeEEEecCCCCCC---CCeE--EEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 281 QVKALYVKNIPDNTSTEKI------KELFQRHGEVTKVVMPPGKSGK---RDFG--FIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l------~~~f~~~G~i~~v~i~~~~~~~---kg~a--fV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
..+-+||-+||+.+..+++ .++|.+||.|..|.|.+..... .+.+ ||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3456899999987776663 4789999999999987654211 3433 999999999999999999999999
Q ss_pred eEEEEEeccC
Q 015763 350 QVLEVVLAKP 359 (401)
Q Consensus 350 ~~l~v~~a~~ 359 (401)
|.|+..|..-
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999998754
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=0.00013 Score=54.53 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=52.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEE-ecCC-------C-CCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCe-E
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVV-MPPG-------K-SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-V 351 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~-i~~~-------~-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~-~ 351 (401)
.+.|.|-+.|.. ....|.+.|++||.|.... +.+. . .......-|+|.++.+|.+||+. ||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 456899999977 5567888999999998775 2111 0 01136899999999999999995 99999986 4
Q ss_pred EEEEeccC
Q 015763 352 LEVVLAKP 359 (401)
Q Consensus 352 l~v~~a~~ 359 (401)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55887754
No 160
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.70 E-value=2.4e-05 Score=70.66 Aligned_cols=80 Identities=31% Similarity=0.609 Sum_probs=72.5
Q ss_pred CCeEE-EcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 106 GSEVF-IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 106 ~~~v~-v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++| |++|++.++.++|+.+|..+|.|..+++..+..++.++|||||.|.....+.+++.. ....+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 34556 999999999999999999999999999999999999999999999999999999976 7888899999988876
Q ss_pred cc
Q 015763 185 TK 186 (401)
Q Consensus 185 ~~ 186 (401)
+.
T Consensus 263 ~~ 264 (285)
T KOG4210|consen 263 PR 264 (285)
T ss_pred CC
Confidence 54
No 161
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.69 E-value=6.3e-05 Score=66.96 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC--CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
..-++||+||-|++|+.||.+.+...| .+..+++..++.+|.+||||+|...+..+.++.++.|-...|+|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 344799999999999999999998888 678889999999999999999999999999999999999999998766654
Q ss_pred c
Q 015763 183 S 183 (401)
Q Consensus 183 ~ 183 (401)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 4
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.68 E-value=0.00014 Score=47.67 Aligned_cols=52 Identities=25% Similarity=0.511 Sum_probs=43.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHH
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~ 339 (401)
+.|.|.+.+....+. |..+|..||.|..+.+.... .+.+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 578899999776654 55588899999999998443 47999999999999985
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.61 E-value=0.00024 Score=65.21 Aligned_cols=68 Identities=16% Similarity=0.277 Sum_probs=56.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCC---CCC------------CCCeEEEEeCCHHHHHHHHHhhcC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG---KSG------------KRDFGFIHYAERSSALKAVKDTEK 344 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~---~~~------------~kg~afV~f~~~~~A~~A~~~l~g 344 (401)
.++++|.+.|||.+-.-+-|.++|+.||.|+.|+|+.. ... .+-+|+|+|.+.+.|.+|...|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35789999999988888999999999999999999876 111 134699999999999999998865
Q ss_pred Cee
Q 015763 345 YEI 347 (401)
Q Consensus 345 ~~i 347 (401)
...
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 433
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.54 E-value=0.00026 Score=61.76 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=60.3
Q ss_pred ceEEEccC--CCCCCH---HHHHHHHhhcCCeeEEEecCCCCCC---CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 283 KALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 283 ~~l~v~nl--p~~~t~---e~l~~~f~~~G~i~~v~i~~~~~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
+.|.+.|. +-.+.+ .+++..|.+||.|.+|.|.-..... ---.||+|...++|.+|+-.|||+.|+||.++.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 33555555 233333 4678899999999999887665433 234899999999999999999999999999999
Q ss_pred EeccCC
Q 015763 355 VLAKPQ 360 (401)
Q Consensus 355 ~~a~~~ 360 (401)
.|....
T Consensus 362 ~Fyn~e 367 (378)
T KOG1996|consen 362 CFYNLE 367 (378)
T ss_pred eeccHH
Confidence 887653
No 165
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.53 E-value=0.00012 Score=69.69 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=67.2
Q ss_pred cccccceEEEccCCCCCCHHHHHHHHh-hcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCee---CCeEEE
Q 015763 278 AASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGQVLE 353 (401)
Q Consensus 278 ~~~~~~~l~v~nlp~~~t~e~l~~~f~-~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~ 353 (401)
....++.|+|.||-..+|.-+|+.++. ++|.|....|.+-+ ..|||.|.+.++|.....+|||..+ +++.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK----ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK----SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh----cceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 335678999999999999999999999 56677777664444 5799999999999999999999988 689999
Q ss_pred EEeccCC
Q 015763 354 VVLAKPQ 360 (401)
Q Consensus 354 v~~a~~~ 360 (401)
+.|+..-
T Consensus 516 adf~~~d 522 (718)
T KOG2416|consen 516 ADFVRAD 522 (718)
T ss_pred eeecchh
Confidence 9999763
No 166
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.52 E-value=0.00069 Score=53.73 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=53.6
Q ss_pred cccceEEEccCC------CCCCH---HHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCe
Q 015763 280 SQVKALYVKNIP------DNTST---EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (401)
Q Consensus 280 ~~~~~l~v~nlp------~~~t~---e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (401)
++-.||.|+=+. ....+ .+|.+.|..||.+.-|++..+. -+|+|.+-.+|.+|+. ++|.+|+|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~------mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT------MWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC------EEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe------EEEEECccHHHHHHHc-cCCcEECCE
Confidence 444567666554 12232 3678889999999988887764 7999999999999999 799999999
Q ss_pred EEEEEeccCC
Q 015763 351 VLEVVLAKPQ 360 (401)
Q Consensus 351 ~l~v~~a~~~ 360 (401)
.|+|++-++.
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999998764
No 167
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.49 E-value=0.00026 Score=64.20 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=64.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-----CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..|.|.||.+.++.+++..+|...|.|..+.|.+..... .-.|||.|.+...+..|.. |.+++|=++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 479999999999999999999999999999988754432 5689999999999998887 6777777777777666
Q ss_pred cCC
Q 015763 358 KPQ 360 (401)
Q Consensus 358 ~~~ 360 (401)
...
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 543
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.48 E-value=0.00027 Score=46.33 Aligned_cols=52 Identities=19% Similarity=0.511 Sum_probs=43.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHH
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~ 165 (401)
+.|-|.+.|+...+ .+..+|.+||.|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 56899999988765 5666999999999988852 2448999999999999985
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.42 E-value=8.5e-05 Score=63.78 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=55.3
Q ss_pred HHHHHHHh-hcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 297 EKIKELFQ-RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 297 e~l~~~f~-~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
++|...|. +||.|..+.|..+..-- +|-+||.|...++|.+|+..||+..|+|++|.+.+....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555556 89999999887776555 889999999999999999999999999999999999763
No 170
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.35 E-value=0.0007 Score=60.49 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=59.8
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcC--CeeEEEecCCCC-CC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G--~i~~v~i~~~~~-~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
..++||+||-..+|+++|.+.+...| .+..++..-++. ++ ||||+|-..+....++.+..|-.+.|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35899999999999999999998877 444555554443 33 9999999999999999999999999998754443
No 171
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00087 Score=63.28 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhc-ccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..+||||++||--++..+|..+|. -||.|..+-|=.|+.-+.++|-|-|.|.+..+-.+||.+ +.|.+...
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa--------rFvql~h~ 440 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA--------RFVQLDHT 440 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh--------heEEEecc
Confidence 678999999999999999999998 799999999999988899999999999999999999964 45555555
Q ss_pred ccccc
Q 015763 184 ETKNR 188 (401)
Q Consensus 184 ~~~~~ 188 (401)
+-.++
T Consensus 441 d~~KR 445 (520)
T KOG0129|consen 441 DIDKR 445 (520)
T ss_pred cccee
Confidence 44333
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0012 Score=62.78 Aligned_cols=78 Identities=31% Similarity=0.410 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCC--CHH----HHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC-Ce
Q 015763 104 PNGSEVFIGGLPKDA--SEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GK 176 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~--t~~----~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~-g~ 176 (401)
.....|+|.|+|--- ..+ -|.++|+++|+|..+.+..+.. |.++||.|++|.+..+|+.|++.|||..|. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 456779999999532 222 3567899999999999988877 559999999999999999999999998874 55
Q ss_pred EEEEEe
Q 015763 177 TIRCSL 182 (401)
Q Consensus 177 ~l~v~~ 182 (401)
+..|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 566544
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.17 E-value=0.00036 Score=64.13 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=56.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeC---CC--CCCc--------eeEEEEEecCHHHHHHHHHHhcCC
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD---KE--SGES--------KGFAFVSFRSKEFAKKAIDELHSK 171 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~---~~--~g~~--------~g~a~V~f~~~~~a~~a~~~l~~~ 171 (401)
.+++|.+.|||.+-.-+.|.++|..||.|..|+|+.- +. .+.+ +-+|+|+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6889999999999888999999999999999999876 22 2333 335999999999999999777543
Q ss_pred c
Q 015763 172 E 172 (401)
Q Consensus 172 ~ 172 (401)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.10 E-value=0.00087 Score=64.13 Aligned_cols=76 Identities=24% Similarity=0.308 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhc-ccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc---CCeEEEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIRC 180 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~---~g~~l~v 180 (401)
.+..|+|.||---.|..+|+.++. .+|.|...+| ++ -+..|||.|.+.++|...+.+|||..| ++++|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 566899999999999999999997 5667777633 33 366899999999999999999999987 6789999
Q ss_pred Eecccc
Q 015763 181 SLSETK 186 (401)
Q Consensus 181 ~~~~~~ 186 (401)
.|....
T Consensus 517 df~~~d 522 (718)
T KOG2416|consen 517 DFVRAD 522 (718)
T ss_pred eecchh
Confidence 887644
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.07 E-value=0.0026 Score=47.55 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=51.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEE-EeeCC------CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMKDK------ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~-~~~~~------~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~ 177 (401)
..+.|.|-+.|+..+ ..|..+|++||.|.+.. +.++. .......+..|+|.++.+|.+|| ..||..+.|..
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 456699999999854 47888999999997775 11100 00112448999999999999999 45999999876
Q ss_pred EE-EEecc
Q 015763 178 IR-CSLSE 184 (401)
Q Consensus 178 l~-v~~~~ 184 (401)
|. |.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 54 55553
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.05 E-value=0.0038 Score=53.78 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=71.4
Q ss_pred cccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHH
Q 015763 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333 (401)
Q Consensus 255 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~ 333 (401)
....++.+.|.++.. ..|+|.||...++-+.|.+.|+.||.|....+..+..+. .+-++|.|...-
T Consensus 17 ~~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~ 83 (275)
T KOG0115|consen 17 RFPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKP 83 (275)
T ss_pred CCCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcch
Confidence 456677888877743 479999999999999999999999999877666665555 788999999999
Q ss_pred HHHHHHHhhcC----CeeCCeEEEEEecc
Q 015763 334 SALKAVKDTEK----YEIDGQVLEVVLAK 358 (401)
Q Consensus 334 ~A~~A~~~l~g----~~i~g~~l~v~~a~ 358 (401)
.|..|+..++- ....+++..|....
T Consensus 84 ~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 84 NARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred hHHHHHHHhccCccccCCCCCccCCChhh
Confidence 99999998853 33345666655443
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.04 E-value=0.0019 Score=55.55 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCccCCeEEEEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCC
Q 015763 160 FAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239 (401)
Q Consensus 160 ~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~ 239 (401)
-|..|-..|.+....|+.|+|.++.. ..|+|.||+..+..+.+.+.|..||+ +....+..| ..++..+-++|.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 45566667899999999999999998 99999999999999999999999999 555544443 245667788999999
Q ss_pred HHHHHHHHHHHhcCC
Q 015763 240 NACADYSRQKMLNAN 254 (401)
Q Consensus 240 ~~~a~~a~~~l~~~~ 254 (401)
...+..|+.......
T Consensus 82 k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 82 KPNARKAARRCREGG 96 (275)
T ss_pred chhHHHHHHHhccCc
Confidence 999988888775443
No 178
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.91 E-value=0.0035 Score=49.77 Aligned_cols=78 Identities=22% Similarity=0.365 Sum_probs=53.8
Q ss_pred hcCCCCCCCeEEEcCCCCC-----CCHH----HHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 015763 99 LLALPPNGSEVFIGGLPKD-----ASEE----DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (401)
Q Consensus 99 ~~~~~~~~~~v~v~nlp~~-----~t~~----~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~ 169 (401)
....-+...||.|.=+.+. .-.+ +|.+.|..||.+.-++++.+ .-||.|.+-..|.+|+ .++
T Consensus 20 i~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~d 90 (146)
T PF08952_consen 20 ISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLD 90 (146)
T ss_dssp S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGC
T ss_pred HHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccC
Confidence 3444456667887766511 2222 57788899999988888765 4799999999999999 789
Q ss_pred CCccCCeEEEEEeccc
Q 015763 170 SKELKGKTIRCSLSET 185 (401)
Q Consensus 170 ~~~~~g~~l~v~~~~~ 185 (401)
|..+.|+.|+|+.-.+
T Consensus 91 g~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 91 GIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CSEETTEEEEEEE---
T ss_pred CcEECCEEEEEEeCCc
Confidence 9999999999988654
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.56 E-value=0.012 Score=41.79 Aligned_cols=56 Identities=25% Similarity=0.521 Sum_probs=41.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~ 170 (401)
....+|. +|..+...||.++|++||.|. |..+.+. .|||.+...+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4455666 999999999999999999874 4444443 599999999999999987753
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.48 E-value=0.015 Score=45.63 Aligned_cols=73 Identities=14% Similarity=0.241 Sum_probs=55.8
Q ss_pred cccceEEEccCCCCC----CHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNT----STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~----t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
++-.||.|+=|...+ +-..|...++.||+|.+|.+.-.. -|.|.|.+..+|..|+.++.. ..-|..++++
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-----eEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 344688887665544 334556667889999999985443 599999999999999998766 6678888888
Q ss_pred ecc
Q 015763 356 LAK 358 (401)
Q Consensus 356 ~a~ 358 (401)
|-.
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 754
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.43 E-value=0.0015 Score=56.23 Aligned_cols=62 Identities=27% Similarity=0.425 Sum_probs=50.8
Q ss_pred HHHHhhc-ccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 122 DLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 122 ~l~~~f~-~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
+|...|. +||.|..+.+..+.. -.-.|-+||.|...++|.+|+..||+.-+.|++|...++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 899999997766532 4568889999999999999999999999999999987754
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.21 E-value=0.0044 Score=51.93 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=45.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc-cCCe---eEEEEeeCCCCC--CceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDV---FEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~-~g~i---~~~~~~~~~~~g--~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 174 (401)
....|.||+||+.+|++++...+.+ ++.. ..+.......+. ....-|||.|.+.+.+...+..++|..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 5567999999999999999988877 6655 233311221111 22345999999999999999999987764
No 183
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=96.20 E-value=0.0032 Score=58.65 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=4.9
Q ss_pred ceeEEEEEecC
Q 015763 147 SKGFAFVSFRS 157 (401)
Q Consensus 147 ~~g~a~V~f~~ 157 (401)
+.-|..-+|..
T Consensus 192 STDFVCGTLDE 202 (458)
T PF10446_consen 192 STDFVCGTLDE 202 (458)
T ss_pred cccccCCCcCC
Confidence 33344444544
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.14 E-value=0.053 Score=41.41 Aligned_cols=67 Identities=9% Similarity=0.073 Sum_probs=51.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhc-CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~-G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
..+.+-..|..++-..|..+...+ ..|..++|+++...++-.+.++|.+..+|..-...+||+.|+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444445555556666666655 4677899999887667789999999999999999999999974
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.02 E-value=0.047 Score=36.71 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=45.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhc---CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRH---GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~---G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l 342 (401)
..|+|+++. .++.++|+.+|..| ....+|.-+.+. -|=|-|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 579999997 68999999999998 235577766665 4999999999999999865
No 186
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.99 E-value=0.0027 Score=63.88 Aligned_cols=79 Identities=14% Similarity=0.249 Sum_probs=67.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
..+.+||++||+..+++.+|+..|..+|.|..|.|....-+. .-||||.|.+...+-+|...+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 346899999999999999999999999999999987775544 6799999999999999999999888865566655553
No 187
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.049 Score=52.48 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhccc----CCeeEEEEeeCCC----------CCC---------------------
Q 015763 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDKE----------SGE--------------------- 146 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~----g~i~~~~~~~~~~----------~g~--------------------- 146 (401)
....++|-|.||.|+ +...+|..+|..| |.|.+|.|+.... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346678999999996 7888999988766 4899998876321 122
Q ss_pred ----------------ceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 147 ----------------SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 147 ----------------~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
..-||.|+|.+...|.+.+..+.|..+....+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~ 299 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANK 299 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccce
Confidence 122689999999999999999999988654433
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.72 E-value=0.056 Score=36.34 Aligned_cols=53 Identities=25% Similarity=0.408 Sum_probs=43.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccc---CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHh
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPI---GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~---g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l 168 (401)
+|+|+++. +++.++|+.+|..| .....|..+-+. .|=|.|.+...|.+||.+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 59999996 58888999999998 134577777765 3899999999999999654
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.71 E-value=0.0075 Score=56.47 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=64.1
Q ss_pred cccceEEEccCCCCC-CHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~-t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...+.|-+.-+|+.+ +..+|...|.+||.|..|.|.... -.|.|+|.+..+|-.|.. .++..|++|.|+|.|.+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 334566777777666 568899999999999999886663 359999999999988888 59999999999999999
Q ss_pred CCC
Q 015763 359 PQT 361 (401)
Q Consensus 359 ~~~ 361 (401)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 854
No 190
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.62 E-value=0.052 Score=48.04 Aligned_cols=72 Identities=31% Similarity=0.432 Sum_probs=55.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeE-EEEEeccCC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV-LEVVLAKPQ 360 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~v~~a~~~ 360 (401)
.=|.|.++|+.- -.-|..+|.+||.|.+....... .+-.|.|.+.-+|.+||.+ ||+.|+|.. |=|..+..+
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 346677777543 35678899999999988877333 4899999999999999996 999998865 556665443
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.56 E-value=0.051 Score=45.72 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=46.7
Q ss_pred CHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc--CCeeCCeEEEEEeccCCCc
Q 015763 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 295 t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~a~~~~~ 362 (401)
....|+.+|.+|+.+..+..++.- +-..|.|.+.+.|.+|...|+ +..|.|..|+|.|+.....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 347899999999988877666654 358999999999999999999 9999999999999965443
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.48 E-value=0.058 Score=38.32 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=39.5
Q ss_pred eEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc
Q 015763 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~ 343 (401)
-||--..|..+-..+|.++|+.||.|.=--| .+ .-|||...+.+.|..|+..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-ND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-CT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-cC-----CcEEEEeecHHHHHHHHHHhc
Confidence 3444449999999999999999998754444 33 259999999999999999875
No 193
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.41 E-value=0.056 Score=50.56 Aligned_cols=68 Identities=7% Similarity=0.183 Sum_probs=61.3
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhc-CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~-G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
++.|+|-.+|..++-.+|..|+..| -.|.+|+|+++...++-.++|+|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6789999999999999999999876 4678999999877667779999999999999999999999975
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.35 E-value=0.02 Score=47.95 Aligned_cols=82 Identities=11% Similarity=0.034 Sum_probs=52.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhh-cCCe---eEEE--ecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCC---
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQR-HGEV---TKVV--MPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG--- 349 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~-~G~i---~~v~--i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g--- 349 (401)
....|.|++||+.+|++++...++. ++.. ..+. ........ -.-|||.|.+.+++..-...++|+.|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999887776 5555 3443 22222222 3459999999999999999999987742
Q ss_pred --eEEEEEeccCCCc
Q 015763 350 --QVLEVVLAKPQTD 362 (401)
Q Consensus 350 --~~l~v~~a~~~~~ 362 (401)
.+..|.||.-+..
T Consensus 86 ~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 86 NEYPAVVEFAPYQKV 100 (176)
T ss_dssp -EEEEEEEE-SS---
T ss_pred CCcceeEEEcchhcc
Confidence 4678888876544
No 195
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.31 E-value=0.016 Score=53.49 Aligned_cols=77 Identities=17% Similarity=0.366 Sum_probs=61.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhc--CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcC-CeeCCeEEEEEeccC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLAKP 359 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~--G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~a~~ 359 (401)
+.++|+||.+.++..+|..+|... +.-..+.+ . .||+||.+.+..-|.+|+..|+| ..+.|+++.|.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-K-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-e-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999764 11111111 1 48999999999999999999998 567899999999988
Q ss_pred CCcCCC
Q 015763 360 QTDKKT 365 (401)
Q Consensus 360 ~~~~~~ 365 (401)
+..+..
T Consensus 76 kkqrsr 81 (584)
T KOG2193|consen 76 KKQRSR 81 (584)
T ss_pred HHHHhh
Confidence 766544
No 196
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.30 E-value=0.05 Score=47.88 Aligned_cols=62 Identities=24% Similarity=0.383 Sum_probs=49.1
Q ss_pred HHHHHhhcccCCeeEEEEeeCCCCCCc-eeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 121 EDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 121 ~~l~~~f~~~g~i~~~~~~~~~~~g~~-~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
.+++.-+.+||.|..|.|...+.--.. .--.||+|...++|.+|+-.|||..|.||.++..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 457788899999999988766421111 12379999999999999999999999999987654
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.29 E-value=0.01 Score=55.56 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 104 PNGSEVFIGGLPKDA-SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~-t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
.+.+.|-+.-.|+.. +-.+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|. ..++..|++|.|+|.|
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFW 442 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEE
Confidence 356677777788775 56689999999999999987433 346999999999998888 5699999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
.++..
T Consensus 443 hnps~ 447 (526)
T KOG2135|consen 443 HNPSP 447 (526)
T ss_pred ecCCc
Confidence 88754
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.28 E-value=0.1 Score=41.04 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=56.2
Q ss_pred CCCCCeEEEcCCCCCCC----HHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 103 PPNGSEVFIGGLPKDAS----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t----~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
.+.-.||.|+=|..++. ...|...++.||+|.+|.++ | +..|.|.|++..+|-+|+.+.+. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 44566788886666653 33456677899999999886 3 34699999999999999988665 6677888
Q ss_pred EEEecc
Q 015763 179 RCSLSE 184 (401)
Q Consensus 179 ~v~~~~ 184 (401)
.+.|..
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887754
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.17 E-value=0.049 Score=52.22 Aligned_cols=71 Identities=18% Similarity=0.292 Sum_probs=57.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhh--cCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcC--CeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~--~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~ 355 (401)
...|.|.|+-||..+..++|+-+|+. |-+++++....+.+ .||+|.+..+|++|++.|.- ..|.|+.|..+
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 34567788999999999999999976 77888888766653 89999999999999998753 66778776544
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.75 E-value=0.28 Score=37.47 Aligned_cols=66 Identities=20% Similarity=0.345 Sum_probs=48.3
Q ss_pred CeEEEcCCCCC-CCHHHHHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015763 107 SEVFIGGLPKD-ASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (401)
Q Consensus 107 ~~v~v~nlp~~-~t~~~l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 174 (401)
++|.|=-+|+. ++-.+|..+...+- .|..++++++. ..++-.+.+.|+++..|.......||+.++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 44444455555 55556666666665 67788998874 335667999999999999999999998875
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.54 E-value=0.013 Score=52.80 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=61.2
Q ss_pred ceEEEccCCCCCCHHHH---HHHHhhcCCeeEEEecCCCC--CC---CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 283 KALYVKNIPDNTSTEKI---KELFQRHGEVTKVVMPPGKS--GK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l---~~~f~~~G~i~~v~i~~~~~--~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
+-++|-+|+..+-.+.+ ...|.+||.|..|.+..+.. .. ..-++|+|...++|..||...+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45677788876655554 35789999999999988662 11 334899999999999999999999999999888
Q ss_pred EeccC
Q 015763 355 VLAKP 359 (401)
Q Consensus 355 ~~a~~ 359 (401)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 77754
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.29 E-value=0.024 Score=51.16 Aligned_cols=81 Identities=23% Similarity=0.405 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHH---HhhcccCCeeEEEEeeCCC--CC-CceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 106 GSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKE--SG-ESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~--~g-~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
..-+||-+|++....+.+. .+|.+||.|..|.+.++.. .+ ....-+||+|...++|..||...+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3458888999887666655 4899999999998877652 11 1122389999999999999999999999999988
Q ss_pred EEecccc
Q 015763 180 CSLSETK 186 (401)
Q Consensus 180 v~~~~~~ 186 (401)
+.+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7776654
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.10 E-value=0.087 Score=50.57 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc--cCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCeEEEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIRC 180 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~--~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~--~~~~g~~l~v 180 (401)
..+.|.|+-||..+..++|+.+|+. |-.+.+|.+-.+.. =||+|.+..+|+.|.+.|.. ..|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 5567889999999999999999965 77889998876643 69999999999999988775 4578887765
Q ss_pred Ee
Q 015763 181 SL 182 (401)
Q Consensus 181 ~~ 182 (401)
++
T Consensus 247 RI 248 (684)
T KOG2591|consen 247 RI 248 (684)
T ss_pred hh
Confidence 44
No 204
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=93.64 E-value=0.046 Score=57.28 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=3.3
Q ss_pred HHHhhcc
Q 015763 123 LRDLCEP 129 (401)
Q Consensus 123 l~~~f~~ 129 (401)
|.++|+.
T Consensus 741 La~~Fk~ 747 (784)
T PF04931_consen 741 LAAIFKE 747 (784)
T ss_pred HHHHHHH
Confidence 4445543
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.64 E-value=0.062 Score=52.75 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=63.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
++..++||+|+...+..+-++.+...||.|....... |||..|..+..+.+|+..|+-..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 5567999999999999999999999999988776544 8999999999999999999999999998877663
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.60 E-value=0.37 Score=33.94 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHhhcC-----CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 292 ~~~t~e~l~~~f~~~G-----~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..++..+|..++...+ .|-.|.|... |+||+-... .|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4678888888888765 4457777554 799998754 889999999999999999999875
No 207
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.35 E-value=5.5 Score=35.67 Aligned_cols=173 Identities=13% Similarity=0.204 Sum_probs=104.7
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCC------CCCCCccEEEEEeCCHHHHHHHH----HHHhcCCcc
Q 015763 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ------NPSRNRGFSFVLYYNNACADYSR----QKMLNANFK 256 (401)
Q Consensus 187 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~------~~~~~~g~~~v~f~~~~~a~~a~----~~l~~~~~~ 256 (401)
+.|.+.|+...++--.+...|.+||+ |+++-++.+.. ..-....-..+.|-+...|..-+ +.|..-+..
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 56888999999999999999999999 99999988741 11223456778899998885444 344443446
Q ss_pred cCCCCCeeeecCCCCCC--------------------CCcccccccceEEEccCCCCCCHHHHHH---HHhhcC----Ce
Q 015763 257 LDGNTPTISWADPKSTP--------------------DHSAAASQVKALYVKNIPDNTSTEKIKE---LFQRHG----EV 309 (401)
Q Consensus 257 ~~~~~~~v~~~~~~~~~--------------------~~~~~~~~~~~l~v~nlp~~~t~e~l~~---~f~~~G----~i 309 (401)
+....+.+.+..-.... ........++.|.|.--.....++-+.+ ++..-+ .+
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYVl 174 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYVL 174 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEEE
Confidence 66667766655421110 0111122356666654433223333322 222223 35
Q ss_pred eEEEecCCCCCC----CCeEEEEeCCHHHHHHHHHhhc--CCeeC-CeEEEEEeccCC
Q 015763 310 TKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTE--KYEID-GQVLEVVLAKPQ 360 (401)
Q Consensus 310 ~~v~i~~~~~~~----kg~afV~f~~~~~A~~A~~~l~--g~~i~-g~~l~v~~a~~~ 360 (401)
.+|.|+...... +.||.++|-+...|...+.-|. +...+ .+...|..+...
T Consensus 175 EsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 175 ESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 677776554322 7899999999999988887665 33332 344555555433
No 208
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=93.31 E-value=0.18 Score=51.86 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=24.3
Q ss_pred ceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015763 147 SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (401)
Q Consensus 147 ~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 174 (401)
-+||-||+-..+..+..||+.+-+....
T Consensus 209 lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 209 LKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cceeEEEEechhHHHHHHHhhhhhheec
Confidence 4899999999999999999887776655
No 209
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.21 E-value=0.081 Score=53.32 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=62.5
Q ss_pred EEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCee--CCeEEEEEeccCCCcC
Q 015763 286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--DGQVLEVVLAKPQTDK 363 (401)
Q Consensus 286 ~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v~~a~~~~~~ 363 (401)
.+.|.+-..+-.-|..+|+.||.|..++..++-+ .|.|.|.+.+.|..|+.+|+|+.+ .|-+.+|.||+.-...
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 3444455666778999999999999999988774 699999999999999999999776 4889999999986554
Q ss_pred C
Q 015763 364 K 364 (401)
Q Consensus 364 ~ 364 (401)
.
T Consensus 378 e 378 (1007)
T KOG4574|consen 378 E 378 (1007)
T ss_pred c
Confidence 3
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.07 E-value=0.57 Score=32.99 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=35.5
Q ss_pred CCCHHHHHHhhcccC-----CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 117 DASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 117 ~~t~~~l~~~f~~~g-----~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
.+++.+|..++...+ .|-.|.+..+ |+||+.... .|..++..|++..+.|++++|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 578888888887654 5667777544 789998865 788888899999999999999764
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.03 E-value=0.28 Score=43.57 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=53.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE-EEEecc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI-RCSLSE 184 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l-~v~~~~ 184 (401)
.+=|.|-++|+...- -|..+|.+||.|...... ..-.+-+|.|.+.-+|.+||.. +|+.|.|..+ -|..+.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 445778888886544 577899999998776553 2344899999999999999954 9999888764 344443
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.89 E-value=0.75 Score=31.47 Aligned_cols=56 Identities=9% Similarity=0.187 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 292 ~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
..++-++|+..+.+|+ -.+|+. ++.| =||.|.+..+|.+++...+|..+.+.+|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~~--d~tG----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIRD--DRTG----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEEe--cCCE----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3578899999999994 455554 4433 589999999999999999999998887764
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.66 E-value=0.42 Score=44.97 Aligned_cols=69 Identities=17% Similarity=0.379 Sum_probs=59.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g 175 (401)
.++.|+|-.+|-.++..||..|+..+- .|..++++++. -.++=.+.|.|++..+|......+||..|+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 388999999999999999999998776 78999999963 2345568999999999999999999998863
No 214
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=92.54 E-value=0.25 Score=52.11 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.6
Q ss_pred CCHHHHHHhhcccC
Q 015763 118 ASEEDLRDLCEPIG 131 (401)
Q Consensus 118 ~t~~~l~~~f~~~g 131 (401)
.+-++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 36678999988764
No 215
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.27 E-value=0.31 Score=41.03 Aligned_cols=59 Identities=24% Similarity=0.300 Sum_probs=45.8
Q ss_pred HHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhc--CCccCCeEEEEEecc
Q 015763 120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCSLSE 184 (401)
Q Consensus 120 ~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~ 184 (401)
...|+++|..|+.+..+.+++... -..|.|.+.+.|.+|...|+ +..+.|..++|.++.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 467999999999998888876533 48999999999999999999 899999999998874
No 216
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.83 E-value=1.6 Score=44.69 Aligned_cols=68 Identities=10% Similarity=0.186 Sum_probs=50.1
Q ss_pred EEccCC--CCCCHHHHHHHHhhcCCee-----EEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 286 YVKNIP--DNTSTEKIKELFQRHGEVT-----KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 286 ~v~nlp--~~~t~e~l~~~f~~~G~i~-----~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
|.-|+. ..++...|..++..-+.|. .|.|.. .|.||+... ..|...+..|++..+.|++|.|..++
T Consensus 489 ~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 489 YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred EEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC------CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 333443 5778888888877766554 455544 378999864 46888999999999999999999986
Q ss_pred CC
Q 015763 359 PQ 360 (401)
Q Consensus 359 ~~ 360 (401)
..
T Consensus 562 ~~ 563 (629)
T PRK11634 562 DA 563 (629)
T ss_pred CC
Confidence 33
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=1.9 Score=42.12 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=64.6
Q ss_pred cccceEEEccCC-CCCCHHHHHHHHhhc----CCeeEEEecCCCCC----------------------------------
Q 015763 280 SQVKALYVKNIP-DNTSTEKIKELFQRH----GEVTKVVMPPGKSG---------------------------------- 320 (401)
Q Consensus 280 ~~~~~l~v~nlp-~~~t~e~l~~~f~~~----G~i~~v~i~~~~~~---------------------------------- 320 (401)
..+++|-|.|+. ..+..++|..+|+.| |.|.+|.|.+..-|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 567899999999 577889999999876 68999988643110
Q ss_pred -------------C-C-CeEEEEeCCHHHHHHHHHhhcCCeeC--CeEEEEEeccCC
Q 015763 321 -------------K-R-DFGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLAKPQ 360 (401)
Q Consensus 321 -------------~-k-g~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a~~~ 360 (401)
+ + =||.|+|.+...|......++|..|. +..|-++|-.-.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 1 1 26999999999999999999999996 677778777643
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.80 E-value=0.28 Score=49.70 Aligned_cols=71 Identities=31% Similarity=0.422 Sum_probs=59.3
Q ss_pred EEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc--CCeEEEEEeccc
Q 015763 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSET 185 (401)
Q Consensus 109 v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~ 185 (401)
..+.|.+-..+-.-|..+|.+||.|.+++.+++-. .|.|.|.+.+.|..|+.+|+|..+ .|-+.+|..++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44556666677778999999999999999988754 799999999999999999999875 577788888764
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.69 E-value=0.77 Score=40.29 Aligned_cols=128 Identities=16% Similarity=0.296 Sum_probs=72.8
Q ss_pred EEEEEeC----CHHHHHHHHHHHhcCCcccCCCCCeee--ec-----CCCC-----------CCCCcccccccceEEEcc
Q 015763 232 FSFVLYY----NNACADYSRQKMLNANFKLDGNTPTIS--WA-----DPKS-----------TPDHSAAASQVKALYVKN 289 (401)
Q Consensus 232 ~~~v~f~----~~~~a~~a~~~l~~~~~~~~~~~~~v~--~~-----~~~~-----------~~~~~~~~~~~~~l~v~n 289 (401)
.-||.|. +..-.+..+..|.+..+.++|-.-.+. .+ -|+. .-....+.....||++.+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ 156 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAG 156 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecC
Confidence 4566664 344566666777666666665532211 11 1110 001112223456888888
Q ss_pred CCCCC------------CHHHHHHHHhhcCCeeEEEecCCC---------CCC---CCe---------EEEEeCCHHHHH
Q 015763 290 IPDNT------------STEKIKELFQRHGEVTKVVMPPGK---------SGK---RDF---------GFIHYAERSSAL 336 (401)
Q Consensus 290 lp~~~------------t~e~l~~~f~~~G~i~~v~i~~~~---------~~~---kg~---------afV~f~~~~~A~ 336 (401)
||..| ++.-|+..|..||.|..|.|+.-. ..+ +|| |||+|-...--.
T Consensus 157 ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa 236 (445)
T KOG2891|consen 157 IPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFA 236 (445)
T ss_pred CcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHH
Confidence 88433 456799999999999999887421 111 444 356665555566
Q ss_pred HHHHhhcCCee----CC----eEEEEEeccC
Q 015763 337 KAVKDTEKYEI----DG----QVLEVVLAKP 359 (401)
Q Consensus 337 ~A~~~l~g~~i----~g----~~l~v~~a~~ 359 (401)
.|+.+|.|+.+ +| -.++|.|.++
T Consensus 237 ~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 237 QAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHhcchHHhhcCCcccccccccccchh
Confidence 67777776554 22 3577777665
No 220
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.96 E-value=2.6 Score=28.84 Aligned_cols=55 Identities=11% Similarity=0.120 Sum_probs=42.5
Q ss_pred CCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 117 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
.++-.+|+..++.|+- .+|+.++ . --||.|.+..+|.+|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----t-GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----T-GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----C-EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999963 2334443 2 2599999999999999999998887776654
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.83 E-value=0.35 Score=47.73 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...+|||+|+...+...-++.++..||-|.++.... |+|..|..+.....|+..++...+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3566899999999999999999999999887776543 899999999999999999998888888877654
No 222
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=87.75 E-value=1.5 Score=31.88 Aligned_cols=70 Identities=11% Similarity=0.169 Sum_probs=45.7
Q ss_pred EEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCC---CCCCcccccccceEEEccCCCCCCHHHHHHHH
Q 015763 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS---TPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (401)
Q Consensus 233 ~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f 303 (401)
|+++|.....|.+.++. ..+.+.+......+...+... ..-........++|.|+|||..++++.|++.+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 57889988888766653 334455666555554433222 22223334557899999999999999998543
No 223
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=87.20 E-value=0.83 Score=48.26 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=6.6
Q ss_pred CeEEEEEeccCCCc
Q 015763 349 GQVLEVVLAKPQTD 362 (401)
Q Consensus 349 g~~l~v~~a~~~~~ 362 (401)
-++|.+.-.+|..-
T Consensus 742 r~PL~l~~~kP~~I 755 (840)
T PF04147_consen 742 RRPLQLQKHKPIPI 755 (840)
T ss_pred CCCceeccCCCccc
Confidence 34555554444433
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.09 E-value=0.47 Score=43.82 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=46.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCC-eeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHH
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~ 167 (401)
-.+.|-|.++|.....+||...|..|+. =..|.++-+. .||..|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 5678999999999999999999999973 3556666554 599999999999999943
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=85.95 E-value=2.3 Score=34.60 Aligned_cols=120 Identities=11% Similarity=0.111 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHhh-CCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCCc
Q 015763 198 WTEDEFRKVIEDV-GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276 (401)
Q Consensus 198 ~~~~~l~~~f~~~-g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 276 (401)
.+-..|...+... +. ...+.+..- ..++..+.|.+..++..++. ..+..+.+..+.+..-.|.......
T Consensus 29 ~~~~~l~~~l~~~W~~-~~~~~i~~l------~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~ 98 (153)
T PF14111_consen 29 ISLSALEQELAKIWKL-KGGVKIRDL------GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEV 98 (153)
T ss_pred CCHHHHHHHHHHHhCC-CCcEEEEEe------CCCeEEEEEEeccceeEEEe---cccccccccchhhhhhccccccccc
Confidence 4455565555543 22 223333332 45788899999988876655 3555666666666544444332222
Q ss_pred ccccccceEEEccCCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEE
Q 015763 277 AAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFI 327 (401)
Q Consensus 277 ~~~~~~~~l~v~nlp~~-~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV 327 (401)
......-=|.|.|||.. .+++-|+.+.+.+|.+..+...........||-|
T Consensus 99 ~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 99 KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEE
Confidence 22223345889999964 6888999999999999999887665443445544
No 226
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=85.24 E-value=1.2 Score=41.44 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.3
Q ss_pred CCHHHHHH
Q 015763 118 ASEEDLRD 125 (401)
Q Consensus 118 ~t~~~l~~ 125 (401)
+|+.+++.
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 45666553
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=83.99 E-value=2.8 Score=34.66 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=56.1
Q ss_pred ceEEEccCCCCCCH-----HHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCe-EEEEEe
Q 015763 283 KALYVKNIPDNTST-----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVVL 356 (401)
Q Consensus 283 ~~l~v~nlp~~~t~-----e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v~~ 356 (401)
.++.+++|+..+-. .....+|.+|-...-..+.+.. ++..|-|.++..|..|..+++...|.|+ .+++.|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf----rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF----RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh----ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 45777777743321 2345666666555544444443 4678899999999999999999999998 999999
Q ss_pred ccCCCcCC
Q 015763 357 AKPQTDKK 364 (401)
Q Consensus 357 a~~~~~~~ 364 (401)
|.+.....
T Consensus 87 aQ~~~~~~ 94 (193)
T KOG4019|consen 87 AQPGHPES 94 (193)
T ss_pred ccCCCccc
Confidence 98865544
No 228
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=83.15 E-value=2.1 Score=43.43 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=9.6
Q ss_pred EEEcCCCCCCCHHHHHHhh
Q 015763 109 VFIGGLPKDASEEDLRDLC 127 (401)
Q Consensus 109 v~v~nlp~~~t~~~l~~~f 127 (401)
..++.+|-.++.++...++
T Consensus 958 k~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHLL 976 (988)
T ss_pred hccccchhhhhHHHHHHHh
Confidence 4455566555555544444
No 229
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.48 E-value=2 Score=31.31 Aligned_cols=55 Identities=18% Similarity=0.412 Sum_probs=40.3
Q ss_pred EEEEecCHHHHHHHHHHhcCCc--cCCeEEEE---------------EecccccccccCCCCCCCCHHHHHHH
Q 015763 151 AFVSFRSKEFAKKAIDELHSKE--LKGKTIRC---------------SLSETKNRLFIGNVPKNWTEDEFRKV 206 (401)
Q Consensus 151 a~V~f~~~~~a~~a~~~l~~~~--~~g~~l~v---------------~~~~~~~~l~v~~l~~~~~~~~l~~~ 206 (401)
|.|+|....-|.+.++. .... +.+.++.| ....+++++.+++||..+.++.|++.
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 68999999999999854 3222 34444433 33446789999999999999988764
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.94 E-value=3.7 Score=36.71 Aligned_cols=81 Identities=11% Similarity=0.258 Sum_probs=63.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCC--------CCC-CCeEEEEeCCHHHHHH----HHHhhc--C
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--------SGK-RDFGFIHYAERSSALK----AVKDTE--K 344 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~--------~~~-kg~afV~f~~~~~A~~----A~~~l~--g 344 (401)
..++.|.+.|+...++-..+...|-+||+|.+|++..+. ..+ ..-..+-|-+.+.+.. .++.|+ .
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999998877 111 4568889998887653 344444 3
Q ss_pred CeeCCeEEEEEeccCC
Q 015763 345 YEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 345 ~~i~g~~l~v~~a~~~ 360 (401)
..+....|+|.|..-.
T Consensus 93 ~~L~S~~L~lsFV~l~ 108 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLN 108 (309)
T ss_pred HhcCCcceeEEEEEEe
Confidence 5677888999988753
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=79.57 E-value=1.6 Score=33.78 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=32.4
Q ss_pred ceEEEccCCCC---------CCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHH-HHHHH
Q 015763 283 KALYVKNIPDN---------TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA-LKAVK 340 (401)
Q Consensus 283 ~~l~v~nlp~~---------~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A-~~A~~ 340 (401)
.++.|.|+|.. ++-+.|+..|+.|.+++ |+.+.+..+..|+++|.|...-.. ..|++
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 46778888643 35578999999998764 666666666689999999875544 33443
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.76 E-value=1 Score=39.63 Aligned_cols=67 Identities=28% Similarity=0.468 Sum_probs=46.8
Q ss_pred CeEEEcCCCCCC------------CHHHHHHhhcccCCeeEEEEeeC-----CCCCCce-----eE---------EEEEe
Q 015763 107 SEVFIGGLPKDA------------SEEDLRDLCEPIGDVFEVRLMKD-----KESGESK-----GF---------AFVSF 155 (401)
Q Consensus 107 ~~v~v~nlp~~~------------t~~~l~~~f~~~g~i~~~~~~~~-----~~~g~~~-----g~---------a~V~f 155 (401)
.||++.+||-.+ ++.-|+..|..||.|..|.|... .-+|+.. || |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 469999998432 45569999999999988766432 1234433 33 56777
Q ss_pred cCHHHHHHHHHHhcCCcc
Q 015763 156 RSKEFAKKAIDELHSKEL 173 (401)
Q Consensus 156 ~~~~~a~~a~~~l~~~~~ 173 (401)
..-.....|+..|.|..|
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 777777888888887665
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.86 E-value=12 Score=27.10 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=43.4
Q ss_pred eEEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 015763 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l 342 (401)
.-+.--++...+..+|++.++. || .|.+|....-..+. --|||++.....|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHHhh
Confidence 3456667788999999999988 56 67788766555332 25999999999988876654
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=74.70 E-value=13 Score=26.38 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=43.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 015763 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l 342 (401)
.-++-.++...+..+|++.++. || .|..|....-+.+ .--|||++.....|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~-~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG-EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-ceEEEEEECCCCcHHHHHHhh
Confidence 4567778889999999999988 55 6677766554432 225999999988888776654
No 235
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=73.45 E-value=3.3 Score=41.67 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=17.4
Q ss_pred CeEEEEeCCHHHHHHHHHhhcCCeeCCe
Q 015763 323 DFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (401)
Q Consensus 323 g~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (401)
.-.|+..-+.++-..|+.+|-...+.|+
T Consensus 622 r~IFcsImsaeDyiDAFEklLkL~LK~~ 649 (822)
T KOG2141|consen 622 RAIFCSIMSAEDYIDAFEKLLKLSLKGK 649 (822)
T ss_pred hhheeeeecchHHHHHHHHHHhccCCCc
Confidence 3456666667777777776655555554
No 236
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=71.57 E-value=3 Score=42.50 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=11.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhc
Q 015763 232 FSFVLYYNNACADYSRQKMLN 252 (401)
Q Consensus 232 ~~~v~f~~~~~a~~a~~~l~~ 252 (401)
|||-.--+..++-.|+.++..
T Consensus 393 ~Gy~~~lSA~D~v~al~ALLE 413 (622)
T PF02724_consen 393 YGYRGKLSASDVVYALTALLE 413 (622)
T ss_pred ecCCCceeHHHHHHHHHHHhc
Confidence 344333455666666666653
No 237
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=71.42 E-value=9.4 Score=36.51 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=7.7
Q ss_pred CeEEEcCCCCCCCHHH
Q 015763 107 SEVFIGGLPKDASEED 122 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~ 122 (401)
.+||-+-....+..++
T Consensus 317 Ykvftr~fDe~v~aee 332 (620)
T COG4547 317 YKVFTREFDEIVLAEE 332 (620)
T ss_pred ccccchhhhhhhhHHH
Confidence 3455555554443333
No 238
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.23 E-value=4.5 Score=33.50 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=55.0
Q ss_pred CCeEEEcCCCCCC--CH---HHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCe-EEE
Q 015763 106 GSEVFIGGLPKDA--SE---EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIR 179 (401)
Q Consensus 106 ~~~v~v~nlp~~~--t~---~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~-~l~ 179 (401)
.+++.+.+++..+ +. .....+|.+|-+..-..+++ +.++.-|.|.++..|..|...+++..|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3457778887653 11 13456777776554444443 355788999999999999999999999998 888
Q ss_pred EEecccccc
Q 015763 180 CSLSETKNR 188 (401)
Q Consensus 180 v~~~~~~~~ 188 (401)
...+.+...
T Consensus 84 ~yfaQ~~~~ 92 (193)
T KOG4019|consen 84 LYFAQPGHP 92 (193)
T ss_pred EEEccCCCc
Confidence 887776543
No 239
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.42 E-value=11 Score=33.64 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=36.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCe-eEEEEeeCCCCCCceeEEEEEecCH
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSK 158 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~g~~~g~a~V~f~~~ 158 (401)
..+-|+|+|||.++.-.||+..+.+.+-+ .++.. ..+.|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 44569999999999999999999887732 33333 23466799999875
No 240
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=69.02 E-value=5.6 Score=40.14 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=4.1
Q ss_pred HHHHHHHhhC
Q 015763 202 EFRKVIEDVG 211 (401)
Q Consensus 202 ~l~~~f~~~g 211 (401)
-|..++..+|
T Consensus 463 ~ll~ii~~~G 472 (822)
T KOG2141|consen 463 ALLTIIANCG 472 (822)
T ss_pred HHHHHHHHcc
Confidence 3344444443
No 241
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=67.49 E-value=4.3 Score=41.44 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=7.9
Q ss_pred eCCHHHHHHHHHHHhc
Q 015763 237 YYNNACADYSRQKMLN 252 (401)
Q Consensus 237 f~~~~~a~~a~~~l~~ 252 (401)
|...=.|..+.-++..
T Consensus 395 y~~~lSA~D~v~al~A 410 (622)
T PF02724_consen 395 YRGKLSASDVVYALTA 410 (622)
T ss_pred CCCceeHHHHHHHHHH
Confidence 3444455555555543
No 242
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=67.16 E-value=11 Score=26.06 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=46.4
Q ss_pred HHHHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc
Q 015763 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (401)
Q Consensus 121 ~~l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (401)
++|.+-|...| .|..+.-+..+.++.+...-||++........++ +=..+.+..+.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46788888888 7888888777767778888999988776644443 445577888888776544
No 243
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=61.85 E-value=7.2 Score=40.76 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=13.3
Q ss_pred cCCCCCCHHHHHHHHhh
Q 015763 289 NIPDNTSTEKIKELFQR 305 (401)
Q Consensus 289 nlp~~~t~e~l~~~f~~ 305 (401)
+.|..+...+|+++|+.
T Consensus 446 ~~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 446 KGPLEVPASELRKYFEP 462 (1024)
T ss_pred CCccccchHhhhhhccC
Confidence 45778888899999863
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=61.55 E-value=16 Score=33.84 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=45.4
Q ss_pred EEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccccccccCCCCCCCCHHHHHHHHH
Q 015763 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIE 208 (401)
Q Consensus 151 a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 208 (401)
|||.|++..+|..|++.+... .++.+++..|.+.+.+.=.||........+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCcccccccccCCChHHHHHHHHHH
Confidence 799999999999999765443 34667999999999999999988877777776553
No 245
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=59.23 E-value=16 Score=25.12 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHHHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 121 ~~l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.+|..-|...| ++..++.+...+++.+...-+|+.......... |+=+.|.|+++.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~I---l~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEI---LNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcce---EeehhhCCeeEEEecCcc
Confidence 46888888898 888888888888777777888888766443332 344567788888877653
No 246
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=58.90 E-value=3.1 Score=41.28 Aligned_cols=7 Identities=14% Similarity=0.705 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 015763 395 SVAHDIW 401 (401)
Q Consensus 395 ~~~~~~~ 401 (401)
|+|++-|
T Consensus 550 g~~r~~~ 556 (556)
T PF05918_consen 550 GRGRGFW 556 (556)
T ss_dssp -------
T ss_pred cccccCC
Confidence 4566666
No 247
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=58.80 E-value=7.2 Score=37.94 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=14.1
Q ss_pred EEEcCCCCCCCHHHHHHhhc
Q 015763 109 VFIGGLPKDASEEDLRDLCE 128 (401)
Q Consensus 109 v~v~nlp~~~t~~~l~~~f~ 128 (401)
-+|+.||-.++.++...++.
T Consensus 801 ~~lk~lpvfa~ad~ya~~ld 820 (821)
T COG5593 801 NMLKSLPVFASADDYAQYLD 820 (821)
T ss_pred HHHhcCCcccchHHHHHHhc
Confidence 56778888887777666543
No 248
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.92 E-value=6.4 Score=37.47 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=8.7
Q ss_pred ceEEEccCCCCCCHHHH
Q 015763 283 KALYVKNIPDNTSTEKI 299 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l 299 (401)
+.+-+.-.|.....+++
T Consensus 382 na~~~~ldpeifDD~DF 398 (483)
T KOG2773|consen 382 NASPESLDPEIFDDSDF 398 (483)
T ss_pred cccccccCccccCcHHH
Confidence 33444445655666544
No 249
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=57.91 E-value=2.2 Score=41.45 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~ 177 (401)
..++|||+|++++++-.+|..+++.+--+..+.+.....-.+...+.||.|+---...-|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4567999999999999999999998865555544433222345667899999877777777777877665433
No 250
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=57.41 E-value=14 Score=34.54 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=45.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCC----CCeEEEEeCCHHHHHHHHHhhcCCee
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEI 347 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G-~i~~v~i~~~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~i 347 (401)
..+.|.+||+.++.++|.+....+- .+......+...+. .+.|||.|....+...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 6799999999999999988777653 22333333222211 46799999999997777776776555
No 251
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=56.75 E-value=14 Score=30.62 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=40.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCC-CCceeEEEEEecCHHHHHHHHHH
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDE 167 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-g~~~g~a~V~f~~~~~a~~a~~~ 167 (401)
.+++|.. |.+...++|..+-. |.+..+.+.+.... ...+|-.||.|.+.+.|.+++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4556766 44444455655555 78888887765442 25688999999999999998854
No 252
>COG4907 Predicted membrane protein [Function unknown]
Probab=55.95 E-value=26 Score=33.68 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=6.1
Q ss_pred HHHHHHHHhhcC
Q 015763 333 SSALKAVKDTEK 344 (401)
Q Consensus 333 ~~A~~A~~~l~g 344 (401)
+...+|++.++-
T Consensus 526 dkVvkam~~~~~ 537 (595)
T COG4907 526 DKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHhCc
Confidence 444555555543
No 253
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=55.74 E-value=21 Score=35.73 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=9.1
Q ss_pred CCeEEEcCCCCCCCHH
Q 015763 106 GSEVFIGGLPKDASEE 121 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~ 121 (401)
..+||-+-....+...
T Consensus 295 ~Y~vfTt~fDe~i~A~ 310 (600)
T TIGR01651 295 DYKVFTTAFDETVDAE 310 (600)
T ss_pred cceecchhhhhhccHh
Confidence 5567766665554433
No 254
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.78 E-value=3.2 Score=40.32 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=55.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
...++||+.|+++.++-++|..+|+.+-.+.++-+......+ ..+++|+|.-.-...-|.-+||+..+....+.-.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~se~ 306 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLSES 306 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccccc
Confidence 445789999999999999999999998777777665443332 4568899986666666777777766665554433
No 255
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=53.97 E-value=17 Score=28.06 Aligned_cols=54 Identities=28% Similarity=0.361 Sum_probs=29.3
Q ss_pred EEEcCCCCC---------CCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCH-HHHHHHH
Q 015763 109 VFIGGLPKD---------ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK-EFAKKAI 165 (401)
Q Consensus 109 v~v~nlp~~---------~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~-~~a~~a~ 165 (401)
+.|-|+|.. .+...|++.|+.|.++. ++.+.+. ..+.|++.|.|.+- .....|+
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 566677543 35568999999998874 5555544 35789999999875 4444454
No 256
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=53.93 E-value=14 Score=34.54 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCC-eeEEEEeeCCCC--CCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~--g~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 173 (401)
...|.|++||+.++..+|..-+.++-. +....+.....+ ..-.+.|||.|..++.........+|.++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456999999999999999988877652 333333321111 12256799999999998777777776554
No 257
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=53.70 E-value=23 Score=33.96 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=3.5
Q ss_pred cCCeEEEE
Q 015763 173 LKGKTIRC 180 (401)
Q Consensus 173 ~~g~~l~v 180 (401)
+.||+|.|
T Consensus 426 MrGRpItv 433 (620)
T COG4547 426 MRGRPITV 433 (620)
T ss_pred cCCcceeh
Confidence 34444444
No 258
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.31 E-value=86 Score=29.61 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=44.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCe-eEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i-~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
...|-|.++|...-.++|...|..|+.- -+|..+.+. .||--|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 4689999999988888999999999643 345555554 799999999999999984
No 259
>COG4371 Predicted membrane protein [Function unknown]
Probab=52.35 E-value=23 Score=31.02 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=3.1
Q ss_pred cCCeeCC
Q 015763 343 EKYEIDG 349 (401)
Q Consensus 343 ~g~~i~g 349 (401)
.|-.|.|
T Consensus 49 SGGriGG 55 (334)
T COG4371 49 SGGRIGG 55 (334)
T ss_pred hCCCccC
Confidence 3444444
No 260
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=51.78 E-value=15 Score=35.71 Aligned_cols=21 Identities=14% Similarity=0.193 Sum_probs=9.9
Q ss_pred HHHHHHHHHhhcCCeeCCeEE
Q 015763 332 RSSALKAVKDTEKYEIDGQVL 352 (401)
Q Consensus 332 ~~~A~~A~~~l~g~~i~g~~l 352 (401)
.+.+++|-..+....|.|++|
T Consensus 409 WeAkkk~Ke~~~~a~FqGKKI 429 (432)
T PF09073_consen 409 WEAKKKAKEKQKIAKFQGKKI 429 (432)
T ss_pred HHHHHHHHHHhccCCCCCCcc
Confidence 444444444444444445444
No 261
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=51.27 E-value=21 Score=29.60 Aligned_cols=69 Identities=10% Similarity=0.100 Sum_probs=44.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC--C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~--~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
++++.. |.....++|.++-+ |.+..|.......+ . +|-.||+|.+.++|...+.. +.....-..|...|
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 455555 32233334444444 78888888777665 3 89999999999999988775 44444444444333
No 262
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=47.47 E-value=61 Score=24.75 Aligned_cols=108 Identities=20% Similarity=0.285 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc--cCCeEEEEEecccccccc
Q 015763 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRCSLSETKNRLF 190 (401)
Q Consensus 113 nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~l~ 190 (401)
=||+-+. .|-++|..-|+|.+|..+..-.. ..|+-.++|.. +.|. |++-.......+.
T Consensus 10 VlPPYTn--KLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTN--KLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTPASVR 69 (145)
T ss_pred ecCCccc--hhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCcccEE
Confidence 3676554 48899999999988866543211 11222334332 2333 3333333332222
Q ss_pred ---------cCCCCCCCCHHHHHHHHHhhC--CceeEEEEeeCCCCCCCCccEEEEEeCCHH
Q 015763 191 ---------IGNVPKNWTEDEFRKVIEDVG--PGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (401)
Q Consensus 191 ---------v~~l~~~~~~~~l~~~f~~~g--~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~ 241 (401)
|.--|+..|-.+++++|..-- ..|..-.+.++ ..+..+...||..|....
T Consensus 70 i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rd-GLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 70 IQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRD-GLPEGSYRICFRLFNATQ 130 (145)
T ss_pred EecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhc-CCCCCceEEEEEEeccch
Confidence 334577889999999997531 11333334444 334456778888887653
No 263
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.46 E-value=64 Score=23.30 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=41.3
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-cC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHH
Q 015763 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (401)
Q Consensus 109 v~v~nlp~~~t~~~l~~~f~~-~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~ 167 (401)
-|+--++..++..+|++.++. || .|..|+.+..+. ...-|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 555567889999999999977 66 777777665542 233599999998888776543
No 264
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=46.93 E-value=86 Score=20.96 Aligned_cols=50 Identities=10% Similarity=0.198 Sum_probs=33.3
Q ss_pred CCHHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCe
Q 015763 294 TSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (401)
Q Consensus 294 ~t~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~ 346 (401)
-.-.+|..+|.+.| .|.++.+..... +++..+.+.+.+.|.++++. +|..
T Consensus 13 G~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 13 GRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred ChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 34567888888876 778887755433 35666667777777777774 4543
No 265
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=46.65 E-value=54 Score=30.91 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=29.5
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHhhccc----CCeeEEEEeeCC
Q 015763 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDK 142 (401)
Q Consensus 104 ~~~~~v~v~nlp~~-~t~~~l~~~f~~~----g~i~~~~~~~~~ 142 (401)
....+|-|-||.|+ +...+|...|+.| |.|..|.|+...
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 34566999999996 6778898888765 478888886643
No 266
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.64 E-value=39 Score=22.70 Aligned_cols=18 Identities=11% Similarity=0.466 Sum_probs=14.9
Q ss_pred HHHHHhhcccCCeeEEEE
Q 015763 121 EDLRDLCEPIGDVFEVRL 138 (401)
Q Consensus 121 ~~l~~~f~~~g~i~~~~~ 138 (401)
.+||++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 479999999999876654
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.18 E-value=3.2 Score=39.12 Aligned_cols=79 Identities=6% Similarity=0.015 Sum_probs=62.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
.+.++..+|...++.++.-+|..||.|..+.+-+..+++ +-++||.-.+ .+|.-+|.-+.-..+.|..+++.+++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 346788899999999999999999999999887777665 5578887654 4667777777777788889999988764
Q ss_pred Cc
Q 015763 361 TD 362 (401)
Q Consensus 361 ~~ 362 (401)
..
T Consensus 83 ~~ 84 (572)
T KOG4365|consen 83 SE 84 (572)
T ss_pred hh
Confidence 43
No 268
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=46.16 E-value=77 Score=20.24 Aligned_cols=43 Identities=9% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHH
Q 015763 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (401)
Q Consensus 296 ~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~ 339 (401)
-..+...|.+.| .|.++.+.... +..+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 355677788776 77788776654 33567788888888887775
No 269
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=46.09 E-value=8.1 Score=37.59 Aligned_cols=6 Identities=50% Similarity=0.673 Sum_probs=2.4
Q ss_pred CCCCCC
Q 015763 113 GLPKDA 118 (401)
Q Consensus 113 nlp~~~ 118 (401)
|-|..+
T Consensus 534 napkra 539 (615)
T KOG0526|consen 534 NAPKRA 539 (615)
T ss_pred CCCccc
Confidence 344433
No 270
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=45.01 E-value=11 Score=35.45 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=51.2
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHhhcc--cCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHH
Q 015763 105 NGSEVFIGGLPKDASEE--------DLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~--------~l~~~f~~--~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~ 165 (401)
..+.+|+.+++...... ++..+|.. .+.+..++..++.....++|..|++|+....+++.+
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 45668888888765554 89999998 678889999888877889999999999999999887
No 271
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=44.56 E-value=1.1e+02 Score=21.58 Aligned_cols=62 Identities=6% Similarity=0.099 Sum_probs=43.5
Q ss_pred EEEccCCCCCCHHHHHHHHh-------hcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCee
Q 015763 285 LYVKNIPDNTSTEKIKELFQ-------RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~-------~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i 347 (401)
|..++||..+|.++|..+.. .+..|..++-.-.....+.||+..=.+.+...++.+. .|..+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 56788998899999876654 3445666655555444467888888888888888775 36544
No 272
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=43.03 E-value=27 Score=31.19 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=35.6
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCe-eEEEecCCCCCCCCeEEEEeCCHH
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERS 333 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i-~~v~i~~~~~~~kg~afV~f~~~~ 333 (401)
..-|+++|||.++.-.+|+..+.+.+.+ .++.. .+..|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 3569999999999999999999987643 23332 222467999997643
No 273
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=42.67 E-value=18 Score=36.27 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=7.3
Q ss_pred CcccccccccCCc
Q 015763 12 DLEEDNYMEEMDD 24 (401)
Q Consensus 12 ~~~~~~~~~e~~~ 24 (401)
++++++++||++.
T Consensus 520 EVdSDeEWEEEep 532 (811)
T KOG4364|consen 520 EVDSDEEWEEEEP 532 (811)
T ss_pred cccCcccccccCC
Confidence 4556666665554
No 274
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.99 E-value=23 Score=30.72 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=29.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i 314 (401)
....+||+-|+|..++++-|..+.+++|.+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45579999999999999999999999986654443
No 275
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=41.10 E-value=29 Score=32.22 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=26.7
Q ss_pred EEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 325 GFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 325 afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
|||+|++..+|..|++.+.... .+.+++..|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc
Confidence 7999999999999999655433 3556887777654
No 276
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=40.75 E-value=15 Score=29.62 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=62.5
Q ss_pred CCCHHHHHHhhcc-cCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccccc--------
Q 015763 117 DASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN-------- 187 (401)
Q Consensus 117 ~~t~~~l~~~f~~-~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~-------- 187 (401)
..+-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++. .....+.|..+.+..-.+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 3556666655543 232223333322 24689999999999999995 35666777777766544321
Q ss_pred ----ccccCCCCCC-CCHHHHHHHHHhhCCceeEEE
Q 015763 188 ----RLFIGNVPKN-WTEDEFRKVIEDVGPGVETIE 218 (401)
Q Consensus 188 ----~l~v~~l~~~-~~~~~l~~~f~~~g~~v~~~~ 218 (401)
=+.+.+||.. ++.+-++.+.+.+|. +..+.
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~vD 136 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEVD 136 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEEE
Confidence 2677899988 777888999999998 44443
No 277
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=40.58 E-value=26 Score=38.07 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.3
Q ss_pred EEEEeC
Q 015763 325 GFIHYA 330 (401)
Q Consensus 325 afV~f~ 330 (401)
+-+.|+
T Consensus 1587 qkMsFE 1592 (1640)
T KOG0262|consen 1587 QKMSFE 1592 (1640)
T ss_pred HhhhHH
Confidence 333443
No 278
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=40.50 E-value=95 Score=25.01 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=40.0
Q ss_pred eEEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
.-++.-+....+..+|++.++. |+ .|..|.......+. --|||++....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 3456667778999999999987 65 66777665555432 2499999877776655443
No 279
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.41 E-value=90 Score=21.45 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHHHHhhcC-CeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 297 EKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 297 e~l~~~f~~~G-~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
++|.+.|...| .|..|+-+..+.++ -..-||+.+...+... .++=..+.+.+|+|...+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46788888888 67777666666333 4567888876655333 34556788999999876643
No 280
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=39.67 E-value=21 Score=37.90 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=5.4
Q ss_pred CeEEEcCCCC
Q 015763 107 SEVFIGGLPK 116 (401)
Q Consensus 107 ~~v~v~nlp~ 116 (401)
+.+||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 3466655554
No 281
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=39.12 E-value=22 Score=33.03 Aligned_cols=6 Identities=0% Similarity=0.446 Sum_probs=2.6
Q ss_pred eEEEcC
Q 015763 108 EVFIGG 113 (401)
Q Consensus 108 ~v~v~n 113 (401)
.|+|.|
T Consensus 343 ~liVAN 348 (542)
T KOG0699|consen 343 KLIVAN 348 (542)
T ss_pred eEEEec
Confidence 344444
No 282
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=39.01 E-value=46 Score=23.10 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.6
Q ss_pred CeEEEEeCCHHHHHHHHHhhcCCeeCCe
Q 015763 323 DFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (401)
Q Consensus 323 g~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (401)
.+.+|.|.+..+|.+|-+.|...-|..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3689999999999999998876555443
No 283
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=37.81 E-value=1.2e+02 Score=28.68 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=60.4
Q ss_pred cccceEEEccCC-CCCCHHHHHHHHhhc----CCeeEEEecCCCC-----------------------------------
Q 015763 280 SQVKALYVKNIP-DNTSTEKIKELFQRH----GEVTKVVMPPGKS----------------------------------- 319 (401)
Q Consensus 280 ~~~~~l~v~nlp-~~~t~e~l~~~f~~~----G~i~~v~i~~~~~----------------------------------- 319 (401)
.++++|-|-|+. ..+...+|..+|+.| |.|..|.|.+..-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 566889999998 467888999998876 6778888753200
Q ss_pred -------------CCCC-------------------eEEEEeCCHHHHHHHHHhhcCCeeC--CeEEEEEeccCC
Q 015763 320 -------------GKRD-------------------FGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLAKPQ 360 (401)
Q Consensus 320 -------------~~kg-------------------~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a~~~ 360 (401)
+-+| ||.|+|.+...+......++|..+. +..+-++|....
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
Confidence 0012 6899999999999999999998875 556777776543
No 284
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.16 E-value=6.7 Score=37.07 Aligned_cols=77 Identities=6% Similarity=-0.128 Sum_probs=58.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
+.-|+..||-.+++.++.-+|..||-|.-+.+.+....+...-.+||.... ..+..||..+.-+.+.|..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346788899999999999999999988877776666556666677877654 45667776666677778777777665
No 285
>COG4907 Predicted membrane protein [Function unknown]
Probab=35.98 E-value=35 Score=32.80 Aligned_cols=16 Identities=25% Similarity=-0.053 Sum_probs=9.7
Q ss_pred HHHHHHHHhhcCCeeC
Q 015763 333 SSALKAVKDTEKYEID 348 (401)
Q Consensus 333 ~~A~~A~~~l~g~~i~ 348 (401)
-.+.+++++|......
T Consensus 523 GV~dkVvkam~~~~~~ 538 (595)
T COG4907 523 GVSDKVVKAMRKALDM 538 (595)
T ss_pred ccHHHHHHHHHHhCcH
Confidence 3566777776655443
No 286
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.53 E-value=1.3e+02 Score=19.63 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=29.9
Q ss_pred HHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCC
Q 015763 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (401)
Q Consensus 296 ~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~ 345 (401)
-..|..+|.++| .|.++..............+...+.+.+..+++. +|.
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 356777888876 6666665444322234456667777777777775 454
No 287
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=35.07 E-value=59 Score=32.03 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=50.6
Q ss_pred EEEccCCCCCCHHHHHHHHhh-cCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcC
Q 015763 285 LYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~-~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
..+.++|..+-...+...+.+ ++..... ....+...++++.|.+...+.+|+..++|..+.+..+++..+......
T Consensus 28 ~~~e~~~~~~~q~~~~k~~~~~~~~~~s~---tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 28 ISIEMIPTFIGQKQLNKVLLKILRDVKSK---TKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred cceeccCchhhhhHHHhhhhhhccccccc---CCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 344555655555555444433 3222222 111222479999999999999999999999999999999888765443
No 288
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.78 E-value=31 Score=30.02 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=29.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE 135 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~ 135 (401)
.......++|+-|||..+|++.|..+.+++|-+..
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 44557788999999999999999999999985433
No 289
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=34.65 E-value=59 Score=29.33 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=13.9
Q ss_pred EEEEEecccccccccC-CCCCCCCHHHHHHHH
Q 015763 177 TIRCSLSETKNRLFIG-NVPKNWTEDEFRKVI 207 (401)
Q Consensus 177 ~l~v~~~~~~~~l~v~-~l~~~~~~~~l~~~f 207 (401)
-|.|.+...+-+|.|+ .|-..+|..+...+.
T Consensus 102 LLlVa~~dr~~rIevGyGLEg~ltD~~a~~iI 133 (271)
T COG1512 102 LLLVAMNDRRVRIEVGYGLEGVLTDAQAGRII 133 (271)
T ss_pred EEEEEcCCCeEEEEEecCcccccChHHHHHHH
Confidence 3444444434344443 344455555544443
No 290
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=34.54 E-value=90 Score=21.03 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=16.8
Q ss_pred HHHHHHHhhcCCeeEEEecCC
Q 015763 297 EKIKELFQRHGEVTKVVMPPG 317 (401)
Q Consensus 297 e~l~~~f~~~G~i~~v~i~~~ 317 (401)
.+|+++|+..|.|.-+.+..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 579999999999987666443
No 291
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=31.84 E-value=31 Score=36.69 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=5.3
Q ss_pred eeEEEEEecCH
Q 015763 148 KGFAFVSFRSK 158 (401)
Q Consensus 148 ~g~a~V~f~~~ 158 (401)
+.+-.+.|---
T Consensus 931 ~k~y~ltFi~S 941 (1096)
T TIGR00927 931 RKFFVITFLGS 941 (1096)
T ss_pred cceeeehHHHH
Confidence 44555555433
No 292
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.60 E-value=1.6e+02 Score=19.70 Aligned_cols=52 Identities=15% Similarity=0.377 Sum_probs=31.4
Q ss_pred CHHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeC--CHHHHHHHHHhhcCCee
Q 015763 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYA--ERSSALKAVKDTEKYEI 347 (401)
Q Consensus 295 t~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~--~~~~A~~A~~~l~g~~i 347 (401)
.-..|..+|..+| .|.++.............+|.+. +.+.+.++++. +|..+
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~-~G~~v 68 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR-AGYEV 68 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH-CCCee
Confidence 4556788888886 67777665543332344556665 55566677664 45443
No 293
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=30.32 E-value=87 Score=32.24 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=21.7
Q ss_pred CHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcCCCCC
Q 015763 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG 367 (401)
Q Consensus 331 ~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~~~~ 367 (401)
...++..++..+-+ .-.-++|.++-.+|.+.+...+
T Consensus 694 kl~~~l~~vek~~~-~~~~kPLal~~hKPv~i~l~~P 729 (823)
T KOG2147|consen 694 KLEDTLALVEKLTG-FAERKPLALQKHKPVAIRLKMP 729 (823)
T ss_pred HHHHHHHHHHHHhh-hhhcccchhhccCCccccccCc
Confidence 35566667776655 2345677777777766654443
No 294
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.96 E-value=1.6e+02 Score=19.16 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=40.7
Q ss_pred eEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCH----HHHHHHHHh
Q 015763 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER----SSALKAVKD 341 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~----~~A~~A~~~ 341 (401)
|+.|.|+...--...|.+.+.+.-.|..+.+.... +.+-|.|... +....+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC----CEEEEEEecCCCCHHHHHHHHHH
Confidence 56777887777778899999999889999887765 4688888754 445555554
No 295
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=29.27 E-value=56 Score=31.99 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=10.5
Q ss_pred EEEEEecCHHHHHHHHHH
Q 015763 150 FAFVSFRSKEFAKKAIDE 167 (401)
Q Consensus 150 ~a~V~f~~~~~a~~a~~~ 167 (401)
+-.=.|...+.|-|..+.
T Consensus 211 W~HDrF~e~eQaPKSr~e 228 (694)
T KOG4264|consen 211 WKHDRFDEKEQAPKSRKE 228 (694)
T ss_pred cccccchhhhcCchHHHH
Confidence 445567766666655443
No 296
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=28.15 E-value=32 Score=31.90 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=5.7
Q ss_pred CCCCCCCCCCC
Q 015763 391 TPYGSVAHDIW 401 (401)
Q Consensus 391 ~~~g~~~~~~~ 401 (401)
.+|||||.++|
T Consensus 329 aGyggYg~~gw 339 (379)
T KOG1432|consen 329 AGYGGYGIGGW 339 (379)
T ss_pred CccCCcCcCCc
Confidence 34555555555
No 297
>PF12782 Innate_immun: Invertebrate innate immunity transcript family
Probab=28.13 E-value=1.2e+02 Score=25.78 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 015763 335 ALKAVKD 341 (401)
Q Consensus 335 A~~A~~~ 341 (401)
|..||.+
T Consensus 13 aalaisa 19 (311)
T PF12782_consen 13 AALAISA 19 (311)
T ss_pred HHHHHHH
Confidence 3444443
No 298
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=27.08 E-value=3.1e+02 Score=21.54 Aligned_cols=70 Identities=7% Similarity=0.110 Sum_probs=47.7
Q ss_pred ceEEEccCCCC---CCHHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 283 KALYVKNIPDN---TSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 283 ~~l~v~nlp~~---~t~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
..|.|++.... .+-..+.+.+..-| .++++..-.+ ...|+|.+.++-.+|...|....=++-.|.+.++.
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 35666655323 46677888888876 4556655443 48999999999888888777655455566666665
No 299
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.87 E-value=1.2e+02 Score=31.76 Aligned_cols=8 Identities=13% Similarity=0.114 Sum_probs=3.6
Q ss_pred EEEEecCH
Q 015763 151 AFVSFRSK 158 (401)
Q Consensus 151 a~V~f~~~ 158 (401)
.+|.+++.
T Consensus 772 ~~i~~~~~ 779 (968)
T KOG1060|consen 772 THIEEKSI 779 (968)
T ss_pred ccCcchhH
Confidence 34554443
No 300
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.84 E-value=1.5e+02 Score=29.48 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=44.4
Q ss_pred EEccCCCCC---CHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEE
Q 015763 286 YVKNIPDNT---STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (401)
Q Consensus 286 ~v~nlp~~~---t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 352 (401)
+|+||+.-. .-..+..+-++||+|-.+++-.. =.|--.+.+.|+.|+.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~-------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV-------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc-------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 677877322 34556666778999999888433 26777889999999996 8888888876
No 301
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=25.49 E-value=1.9e+02 Score=21.73 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHH
Q 015763 298 KIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (401)
Q Consensus 298 ~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~ 339 (401)
+|..+++.+| |.+..|..+...+.-||++++.+.+..-.++
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 6777888885 7777777777656679999999554443333
No 302
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.91 E-value=2.4e+02 Score=19.42 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=19.6
Q ss_pred EEEEEecCHHHHHHHHHHhcCCcc
Q 015763 150 FAFVSFRSKEFAKKAIDELHSKEL 173 (401)
Q Consensus 150 ~a~V~f~~~~~a~~a~~~l~~~~~ 173 (401)
+.+|.|.+.-.|.+|-+.|...-+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999887765433
No 303
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.81 E-value=61 Score=28.73 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=4.2
Q ss_pred CCCCHHHHH
Q 015763 292 DNTSTEKIK 300 (401)
Q Consensus 292 ~~~t~e~l~ 300 (401)
..+|.++|.
T Consensus 183 ~~lTQeElL 191 (240)
T PF05764_consen 183 RPLTQEELL 191 (240)
T ss_pred CCCCHHHHH
Confidence 344555443
No 304
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=23.80 E-value=1.7e+02 Score=25.65 Aligned_cols=53 Identities=19% Similarity=0.373 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHhhcCCeeE--------------EEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 293 NTSTEKIKELFQRHGEVTK--------------VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 293 ~~t~e~l~~~f~~~G~i~~--------------v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+|+..|.+.|.+||-+.- |..+.+.....|.++.... .|..++||.|+-...
T Consensus 161 ~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k------------~Gy~L~~R~IRPA~V 227 (236)
T KOG3003|consen 161 SMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTK------------KGYKLNGRVIRPAMV 227 (236)
T ss_pred HHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEec------------cCcccCCeeechhhe
Confidence 4588999999999995542 2222333323566666553 688888888875443
No 305
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=23.65 E-value=1.6e+02 Score=29.55 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.5
Q ss_pred CeEEEcCCCCCC
Q 015763 107 SEVFIGGLPKDA 118 (401)
Q Consensus 107 ~~v~v~nlp~~~ 118 (401)
++=.|+|||..+
T Consensus 119 ~rntvgnipl~w 130 (733)
T KOG0650|consen 119 TRNTVGNIPLKW 130 (733)
T ss_pred hhcccCCccccc
Confidence 445677777654
No 306
>PHA03169 hypothetical protein; Provisional
Probab=22.93 E-value=3.1e+02 Score=25.81 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=4.3
Q ss_pred HHHHHHhhC
Q 015763 203 FRKVIEDVG 211 (401)
Q Consensus 203 l~~~f~~~g 211 (401)
...+|.++-
T Consensus 303 r~~Ffr~~l 311 (413)
T PHA03169 303 RRRFFRQVL 311 (413)
T ss_pred HHHHHHHhc
Confidence 345555543
No 307
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=22.42 E-value=59 Score=29.58 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=8.3
Q ss_pred ceEEEccCCCCCCHHHH
Q 015763 283 KALYVKNIPDNTSTEKI 299 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l 299 (401)
.||-|--.+..++.+.|
T Consensus 192 ~TV~IvE~~~~~D~e~i 208 (285)
T PF03896_consen 192 GTVTIVEPESGFDPETI 208 (285)
T ss_pred ceEEEeecCCCcChhhh
Confidence 45555444444555544
No 308
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.34 E-value=1.5e+02 Score=30.81 Aligned_cols=16 Identities=0% Similarity=0.108 Sum_probs=7.8
Q ss_pred EecCHHHHHHHHHHhc
Q 015763 154 SFRSKEFAKKAIDELH 169 (401)
Q Consensus 154 ~f~~~~~a~~a~~~l~ 169 (401)
.-++...+.+|++++=
T Consensus 205 ~~k~~~eiIrClka~m 220 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAFM 220 (1102)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344455555555443
No 309
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=65 Score=30.39 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=6.5
Q ss_pred cCCCCCCCHHHHHHhh
Q 015763 112 GGLPKDASEEDLRDLC 127 (401)
Q Consensus 112 ~nlp~~~t~~~l~~~f 127 (401)
..||.--++.+|...|
T Consensus 356 q~lp~i~~p~d~y~~F 371 (514)
T KOG3130|consen 356 QELPTIRTPADIYRAF 371 (514)
T ss_pred ccCCccCCcchhhhhh
Confidence 3344433444444333
No 310
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=21.99 E-value=40 Score=31.77 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=43.9
Q ss_pred ceEEEccCCCCCCH--------HHHHHHHhh--cCCeeEEEecCCC-CCC-CCeEEEEeCCHHHHHHHHH
Q 015763 283 KALYVKNIPDNTST--------EKIKELFQR--HGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVK 340 (401)
Q Consensus 283 ~~l~v~nlp~~~t~--------e~l~~~f~~--~G~i~~v~i~~~~-~~~-kg~afV~f~~~~~A~~A~~ 340 (401)
+.+|+.+.+..... +++...|.. ++.+..|+..++. +.. +|-.|++|.....|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666644433 489999999 6778888888776 333 8889999999999998874
No 311
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.94 E-value=1.3e+02 Score=31.25 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=6.5
Q ss_pred CCHHHHHHhhcccC
Q 015763 118 ASEEDLRDLCEPIG 131 (401)
Q Consensus 118 ~t~~~l~~~f~~~g 131 (401)
++..++-.+|...|
T Consensus 83 ls~~e~~~~F~~~~ 96 (1102)
T KOG1924|consen 83 LSSNEVLELFELMG 96 (1102)
T ss_pred ccHHHHHHHHHHHh
Confidence 34444444554444
No 312
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=21.84 E-value=3.2e+02 Score=19.87 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc
Q 015763 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 296 ~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~ 343 (401)
.+.++++++++| .+.++........ .+..+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD--FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC--EEEEEEcCCHHHHHHHHHHHH
Confidence 356777788875 7888888776644 568889999998887766543
No 313
>PHA03169 hypothetical protein; Provisional
Probab=21.81 E-value=6.9e+02 Score=23.65 Aligned_cols=9 Identities=11% Similarity=0.087 Sum_probs=5.8
Q ss_pred HHHhhcccC
Q 015763 123 LRDLCEPIG 131 (401)
Q Consensus 123 l~~~f~~~g 131 (401)
...||.++-
T Consensus 303 r~~Ffr~~l 311 (413)
T PHA03169 303 RRRFFRQVL 311 (413)
T ss_pred HHHHHHHhc
Confidence 566777763
No 314
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.31 E-value=1.2e+02 Score=28.70 Aligned_cols=7 Identities=43% Similarity=0.586 Sum_probs=3.8
Q ss_pred EEEEecC
Q 015763 151 AFVSFRS 157 (401)
Q Consensus 151 a~V~f~~ 157 (401)
+|+.+.+
T Consensus 370 ~F~~~vn 376 (514)
T KOG3130|consen 370 AFVDVVN 376 (514)
T ss_pred hheeccc
Confidence 5555554
No 315
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=20.84 E-value=1.2e+02 Score=28.03 Aligned_cols=13 Identities=31% Similarity=0.182 Sum_probs=5.5
Q ss_pred cccCCCCCCCCHH
Q 015763 189 LFIGNVPKNWTED 201 (401)
Q Consensus 189 l~v~~l~~~~~~~ 201 (401)
|-+...|.+++.-
T Consensus 152 L~~~k~p~Nin~~ 164 (465)
T KOG3973|consen 152 LNFPKQPGNINEW 164 (465)
T ss_pred cCCCCCCCCchHH
Confidence 3333444444443
No 316
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=20.79 E-value=33 Score=22.60 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=19.1
Q ss_pred CCeEEEEeCC-HHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 322 RDFGFIHYAE-RSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 322 kg~afV~f~~-~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
+|||||...+ ..+.--.-..|++ -++|-++.|....+
T Consensus 8 ~GfGFv~~~~~~~DifIp~~~l~~-A~~gD~V~v~i~~~ 45 (58)
T PF08206_consen 8 KGFGFVIPDDGGEDIFIPPRNLNG-AMDGDKVLVRITPP 45 (58)
T ss_dssp SS-EEEEECT-TEEEEE-HHHHTT-S-TT-EEEEEEEES
T ss_pred CCCEEEEECCCCCCEEECHHHHCC-CCCCCEEEEEEecC
Confidence 5899999987 2222222222332 45567777777663
Done!