Query 015763
Match_columns 401
No_of_seqs 273 out of 2457
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 18:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.2E-44 7.5E-49 329.1 26.4 245 104-362 20-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.9E-44 9.8E-49 329.6 27.3 252 99-360 34-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 4.4E-36 1.5E-40 261.9 16.7 170 105-362 14-183 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 4.9E-33 1.7E-37 239.7 20.4 178 102-365 9-188 (196)
5 3md3_A Nuclear and cytoplasmic 100.0 9.9E-33 3.4E-37 231.1 20.5 164 107-359 1-166 (166)
6 2qfj_A FBP-interacting repress 100.0 1.8E-32 6.1E-37 239.9 22.9 179 105-362 27-207 (216)
7 1b7f_A Protein (SXL-lethal pro 100.0 8E-33 2.7E-37 232.2 19.3 163 105-357 2-168 (168)
8 1fxl_A Paraneoplastic encephal 100.0 2E-32 6.8E-37 229.5 21.1 162 106-357 2-167 (167)
9 3nmr_A Cugbp ELAV-like family 100.0 7.4E-32 2.5E-36 227.8 19.8 165 105-358 2-175 (175)
10 2cjk_A Nuclear polyadenylated 100.0 1.4E-32 4.7E-37 230.6 14.8 163 105-360 2-166 (167)
11 3tyt_A Heterogeneous nuclear r 100.0 4.8E-30 1.6E-34 221.3 22.1 195 105-357 3-204 (205)
12 1fje_B Nucleolin RBD12, protei 100.0 2.1E-31 7.2E-36 225.2 12.9 166 102-360 9-174 (175)
13 2yh0_A Splicing factor U2AF 65 100.0 2.7E-30 9.4E-35 222.8 19.4 181 105-362 3-196 (198)
14 3pgw_A U1-A; protein-RNA compl 100.0 8.3E-30 2.8E-34 232.2 23.4 248 103-358 6-281 (282)
15 2g4b_A Splicing factor U2AF 65 100.0 2E-30 6.8E-35 218.5 17.3 157 105-358 3-172 (172)
16 2adc_A Polypyrimidine tract-bi 100.0 2.3E-29 7.8E-34 221.9 21.4 195 103-360 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-29 3.6E-34 219.1 17.7 193 105-360 2-197 (198)
18 3sde_A Paraspeckle component 1 100.0 1.1E-28 3.8E-33 221.8 18.5 158 104-363 20-182 (261)
19 3smz_A Protein raver-1, ribonu 99.9 1E-25 3.5E-30 205.3 19.3 164 104-272 93-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 3.4E-25 1.2E-29 202.6 14.9 162 104-270 115-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 5.6E-22 1.9E-26 164.1 17.9 136 228-363 11-153 (158)
22 2i2y_A Fusion protein consists 99.9 4.3E-21 1.5E-25 157.3 14.0 139 145-361 10-149 (150)
23 4f25_A Polyadenylate-binding p 99.9 1.8E-21 6.3E-26 151.7 10.6 97 104-202 3-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 4.4E-21 1.5E-25 145.0 11.8 84 102-185 15-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.8 1.7E-20 6E-25 141.7 10.6 80 280-359 17-98 (99)
26 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.4E-20 8.3E-25 153.8 11.3 86 280-365 37-124 (156)
27 2lxi_A RNA-binding protein 10; 99.8 6.3E-20 2.1E-24 136.5 8.7 81 282-362 1-85 (91)
28 3s8s_A Histone-lysine N-methyl 99.8 2.1E-19 7.1E-24 138.4 11.9 84 103-186 3-86 (110)
29 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.4E-19 1.8E-23 135.0 14.0 85 280-364 13-97 (103)
30 2lxi_A RNA-binding protein 10; 99.8 3.7E-20 1.3E-24 137.7 6.0 83 106-188 1-85 (91)
31 3pgw_S U1-70K; protein-RNA com 99.8 6E-20 2E-24 175.5 8.9 84 280-363 100-185 (437)
32 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-18 3.7E-23 136.2 14.5 86 280-365 13-100 (115)
33 1whw_A Hypothetical protein ri 99.8 9E-19 3.1E-23 132.7 13.3 84 280-363 6-91 (99)
34 3s8s_A Histone-lysine N-methyl 99.8 5.4E-20 1.9E-24 141.7 6.6 84 280-363 4-89 (110)
35 2dgx_A KIAA0430 protein; RRM d 99.8 6.7E-19 2.3E-23 132.5 12.3 82 280-362 7-92 (96)
36 2lkz_A RNA-binding protein 5; 99.8 1.2E-19 4.1E-24 135.5 7.8 81 105-185 8-94 (95)
37 2cq3_A RNA-binding protein 9; 99.8 1.4E-18 4.9E-23 132.6 14.0 84 280-363 13-96 (103)
38 4f25_A Polyadenylate-binding p 99.8 2.1E-19 7E-24 140.0 9.4 82 282-363 5-86 (115)
39 2cqd_A RNA-binding region cont 99.8 1.9E-18 6.4E-23 135.0 14.9 83 280-363 15-99 (116)
40 2dnz_A Probable RNA-binding pr 99.8 8.6E-19 2.9E-23 131.8 11.9 83 280-362 3-87 (95)
41 2lkz_A RNA-binding protein 5; 99.8 2.4E-19 8.1E-24 133.9 8.6 79 281-359 8-94 (95)
42 2do0_A HnRNP M, heterogeneous 99.8 2.1E-18 7.1E-23 134.3 14.2 84 280-363 13-97 (114)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.9E-19 3.4E-23 133.2 12.0 85 280-364 10-96 (102)
44 2fy1_A RNA-binding motif prote 99.8 1.5E-18 5.1E-23 135.2 12.8 84 280-363 5-89 (116)
45 3md1_A Nuclear and cytoplasmic 99.8 1.3E-18 4.5E-23 127.3 11.3 80 107-186 2-81 (83)
46 3lqv_A PRE-mRNA branch site pr 99.8 5.3E-19 1.8E-23 137.9 9.7 105 103-212 5-109 (115)
47 1x5u_A Splicing factor 3B subu 99.8 2E-18 6.8E-23 132.3 12.8 84 280-363 13-98 (105)
48 3q2s_C Cleavage and polyadenyl 99.8 1.7E-19 5.8E-24 157.7 7.5 80 281-360 67-150 (229)
49 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-18 3.9E-23 128.8 10.9 83 104-186 4-86 (87)
50 2dgs_A DAZ-associated protein 99.8 1.9E-18 6.5E-23 130.9 12.2 83 280-363 8-92 (99)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-18 3.5E-23 128.5 10.4 82 103-184 4-85 (85)
52 1x5s_A Cold-inducible RNA-bind 99.8 1.4E-18 4.8E-23 132.4 11.5 84 280-363 10-95 (102)
53 2dgu_A Heterogeneous nuclear r 99.8 3.7E-18 1.3E-22 130.2 13.8 80 280-365 9-88 (103)
54 1x5t_A Splicing factor 3B subu 99.8 1.4E-18 4.7E-23 130.9 11.2 84 280-363 3-89 (96)
55 2dnz_A Probable RNA-binding pr 99.8 1.6E-18 5.6E-23 130.2 11.4 85 103-187 2-86 (95)
56 2do4_A Squamous cell carcinoma 99.8 2.3E-18 7.8E-23 130.7 12.0 83 280-362 15-98 (100)
57 2dnm_A SRP46 splicing factor; 99.8 1.9E-18 6.4E-23 131.9 11.6 84 280-363 11-96 (103)
58 1x4a_A Splicing factor, argini 99.8 4.9E-18 1.7E-22 131.0 13.9 82 280-362 20-101 (109)
59 3ex7_B RNA-binding protein 8A; 99.8 1.4E-18 4.8E-23 137.8 10.9 84 280-363 20-105 (126)
60 2lea_A Serine/arginine-rich sp 99.8 5.7E-19 1.9E-23 141.4 8.6 123 232-363 6-130 (135)
61 2cpz_A CUG triplet repeat RNA- 99.8 2.3E-18 7.9E-23 134.2 11.8 85 280-364 23-109 (115)
62 2d9p_A Polyadenylate-binding p 99.8 1.8E-18 6.3E-23 132.0 10.9 84 280-364 13-97 (103)
63 2cq0_A Eukaryotic translation 99.8 2.2E-18 7.4E-23 131.6 11.2 84 280-363 13-98 (103)
64 2jrs_A RNA-binding protein 39; 99.8 1.8E-18 6E-23 133.0 10.8 85 102-186 22-106 (108)
65 3p5t_L Cleavage and polyadenyl 99.8 4.6E-19 1.6E-23 131.7 7.2 81 107-187 2-84 (90)
66 1u6f_A Tcubp1, RNA-binding pro 99.8 3.8E-18 1.3E-22 137.8 13.2 84 280-363 40-125 (139)
67 3r27_A HnRNP L, heterogeneous 99.8 2.2E-18 7.5E-23 128.5 10.8 78 280-361 19-98 (100)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-18 7.5E-23 126.7 10.8 79 280-358 5-85 (85)
69 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-18 5.8E-23 127.9 10.2 81 280-360 4-86 (87)
70 2cqc_A Arginine/serine-rich sp 99.8 2E-18 6.8E-23 129.7 10.7 83 103-185 12-94 (95)
71 2x1f_A MRNA 3'-END-processing 99.8 1E-18 3.5E-23 131.5 9.1 84 106-189 2-85 (96)
72 2cq0_A Eukaryotic translation 99.8 2.1E-18 7.2E-23 131.7 10.9 85 103-187 12-96 (103)
73 1whw_A Hypothetical protein ri 99.8 2E-18 6.9E-23 130.7 10.7 86 103-188 5-90 (99)
74 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-18 5.6E-23 130.5 10.0 82 280-365 14-97 (105)
75 2x1f_A MRNA 3'-END-processing 99.8 3.4E-18 1.2E-22 128.7 11.8 82 282-363 2-85 (96)
76 1x4h_A RNA-binding protein 28; 99.8 6.2E-18 2.1E-22 131.0 13.6 84 280-363 13-104 (111)
77 2dnh_A Bruno-like 5, RNA bindi 99.8 2.9E-18 9.9E-23 131.4 11.6 85 280-364 13-101 (105)
78 2la6_A RNA-binding protein FUS 99.8 3E-18 1E-22 129.8 11.5 85 100-184 7-99 (99)
79 2e5h_A Zinc finger CCHC-type a 99.8 2.1E-18 7.1E-23 129.4 10.5 83 102-184 12-94 (94)
80 2dgs_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 129.6 11.6 86 102-188 6-91 (99)
81 2do4_A Squamous cell carcinoma 99.8 3.8E-18 1.3E-22 129.4 12.0 84 103-187 14-97 (100)
82 2cph_A RNA binding motif prote 99.8 5.7E-18 1.9E-22 130.2 13.0 84 280-363 13-100 (107)
83 1wi8_A EIF-4B, eukaryotic tran 99.8 6.1E-18 2.1E-22 129.3 13.0 82 280-363 13-97 (104)
84 3md1_A Nuclear and cytoplasmic 99.8 2.9E-18 9.9E-23 125.4 10.6 78 283-360 2-81 (83)
85 2cpf_A RNA binding motif prote 99.8 2.1E-18 7.2E-23 130.4 10.1 84 280-363 3-91 (98)
86 1oo0_B CG8781-PA, drosophila Y 99.8 4E-18 1.4E-22 131.8 11.9 83 280-362 24-108 (110)
87 3ns6_A Eukaryotic translation 99.8 3.5E-19 1.2E-23 135.0 5.7 83 105-187 5-94 (100)
88 2dnm_A SRP46 splicing factor; 99.8 1.8E-18 6E-23 132.1 9.6 86 102-187 9-94 (103)
89 2cqc_A Arginine/serine-rich sp 99.8 4E-18 1.4E-22 128.1 11.3 80 280-359 13-94 (95)
90 1x5u_A Splicing factor 3B subu 99.8 2.6E-18 8.9E-23 131.6 10.5 87 102-188 11-97 (105)
91 2e5h_A Zinc finger CCHC-type a 99.8 5.1E-18 1.7E-22 127.2 11.8 79 280-358 14-94 (94)
92 2cpz_A CUG triplet repeat RNA- 99.8 3.3E-18 1.1E-22 133.3 11.2 85 104-188 23-107 (115)
93 2cq1_A PTB-like protein L; RRM 99.8 8.3E-18 2.8E-22 126.9 12.8 81 280-364 13-95 (101)
94 1p27_B RNA-binding protein 8A; 99.8 3.3E-18 1.1E-22 131.3 10.9 83 104-186 21-103 (106)
95 2dgo_A Cytotoxic granule-assoc 99.8 4.6E-18 1.6E-22 132.5 11.8 86 103-188 12-97 (115)
96 1x5s_A Cold-inducible RNA-bind 99.8 2.5E-18 8.5E-23 131.0 9.9 86 102-187 8-93 (102)
97 1wex_A Hypothetical protein (r 99.8 6E-18 2.1E-22 128.4 11.8 81 280-364 13-95 (104)
98 1x5t_A Splicing factor 3B subu 99.8 1.8E-18 6.1E-23 130.3 8.9 84 104-187 3-87 (96)
99 2err_A Ataxin-2-binding protei 99.8 2.4E-18 8.2E-23 132.6 9.8 81 280-360 27-107 (109)
100 2dhg_A TRNA selenocysteine ass 99.8 2.7E-18 9.3E-23 131.3 9.8 84 280-363 7-93 (104)
101 2dgp_A Bruno-like 4, RNA bindi 99.8 5.9E-18 2E-22 129.9 11.6 84 280-363 11-99 (106)
102 1x4h_A RNA-binding protein 28; 99.8 4.3E-18 1.5E-22 131.9 10.9 86 102-187 11-102 (111)
103 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.9E-23 131.2 9.2 85 103-187 9-93 (102)
104 2dng_A Eukaryotic translation 99.8 7.5E-18 2.6E-22 128.5 12.0 82 280-363 13-96 (103)
105 2cpf_A RNA binding motif prote 99.8 3.1E-18 1E-22 129.5 9.7 85 104-188 3-90 (98)
106 2cpe_A RNA-binding protein EWS 99.8 8.3E-18 2.8E-22 130.6 12.4 84 280-363 13-106 (113)
107 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.8E-18 9.5E-23 142.7 10.3 85 280-364 70-156 (165)
108 2dnq_A RNA-binding protein 4B; 99.8 6.5E-18 2.2E-22 125.5 11.2 78 280-363 6-83 (90)
109 4a8x_A RNA-binding protein wit 99.8 4.2E-18 1.4E-22 126.0 10.1 81 281-361 3-86 (88)
110 2ywk_A Putative RNA-binding pr 99.8 4E-18 1.4E-22 128.0 10.1 80 280-359 14-94 (95)
111 2dgv_A HnRNP M, heterogeneous 99.8 2.9E-18 9.8E-23 128.1 9.2 83 280-362 6-88 (92)
112 1x4d_A Matrin 3; structural ge 99.8 4.4E-18 1.5E-22 128.2 10.0 80 280-363 13-95 (102)
113 3s7r_A Heterogeneous nuclear r 99.8 7.1E-18 2.4E-22 124.5 10.9 81 102-183 7-87 (87)
114 2kt5_A RNA and export factor-b 99.7 2.5E-17 8.4E-22 130.2 14.4 86 278-363 31-117 (124)
115 1x4c_A Splicing factor, argini 99.7 1.7E-17 6E-22 127.6 13.1 79 280-363 13-96 (108)
116 1p27_B RNA-binding protein 8A; 99.7 5.2E-18 1.8E-22 130.2 10.1 82 280-361 21-104 (106)
117 2d9p_A Polyadenylate-binding p 99.7 9.3E-18 3.2E-22 128.1 11.5 82 104-187 13-94 (103)
118 2cph_A RNA binding motif prote 99.7 6.6E-18 2.3E-22 129.9 10.7 86 103-188 12-99 (107)
119 3ucg_A Polyadenylate-binding p 99.7 5.6E-18 1.9E-22 125.6 9.9 80 106-186 6-85 (89)
120 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.5E-18 2.2E-22 140.4 11.4 86 102-187 68-153 (165)
121 2kxn_B Transformer-2 protein h 99.7 4.4E-18 1.5E-22 135.0 9.8 87 101-187 41-127 (129)
122 2ywk_A Putative RNA-binding pr 99.7 7E-18 2.4E-22 126.7 10.5 82 103-185 13-94 (95)
123 2div_A TRNA selenocysteine ass 99.7 4.5E-18 1.5E-22 128.8 9.3 83 280-362 7-96 (99)
124 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-17 4.2E-22 127.9 11.9 83 104-187 13-98 (105)
125 1oo0_B CG8781-PA, drosophila Y 99.7 5.8E-18 2E-22 130.8 10.1 83 104-186 24-106 (110)
126 2wbr_A GW182, gawky, LD47780P; 99.7 7.2E-18 2.5E-22 120.9 9.7 75 281-359 6-80 (89)
127 2hvz_A Splicing factor, argini 99.7 8.9E-18 3E-22 127.7 10.8 78 283-363 1-78 (101)
128 1s79_A Lupus LA protein; RRM, 99.7 3.5E-18 1.2E-22 129.8 8.4 80 104-185 9-88 (103)
129 1x4e_A RNA binding motif, sing 99.7 1.9E-18 6.6E-23 126.9 6.8 82 103-184 2-83 (85)
130 2dgp_A Bruno-like 4, RNA bindi 99.7 5.2E-18 1.8E-22 130.2 9.5 86 103-188 10-98 (106)
131 3ns6_A Eukaryotic translation 99.7 1.8E-18 6.1E-23 131.1 6.7 81 281-361 5-94 (100)
132 2jrs_A RNA-binding protein 39; 99.7 7.1E-18 2.4E-22 129.6 10.0 82 280-361 24-107 (108)
133 2div_A TRNA selenocysteine ass 99.7 5.5E-18 1.9E-22 128.3 9.2 85 103-187 6-95 (99)
134 2fc9_A NCL protein; structure 99.7 1.7E-17 5.8E-22 126.1 11.9 80 280-362 13-93 (101)
135 3ulh_A THO complex subunit 4; 99.7 1.2E-17 4.2E-22 128.3 11.2 83 101-184 24-106 (107)
136 2cpe_A RNA-binding protein EWS 99.7 8.3E-18 2.8E-22 130.6 10.2 85 104-188 13-105 (113)
137 2cq4_A RNA binding motif prote 99.7 6.1E-18 2.1E-22 131.6 9.4 83 280-363 23-107 (114)
138 2dng_A Eukaryotic translation 99.7 1.1E-17 3.7E-22 127.6 10.6 82 104-187 13-94 (103)
139 2dgt_A RNA-binding protein 30; 99.7 2.7E-17 9.3E-22 122.6 12.6 78 280-363 8-85 (92)
140 2fy1_A RNA-binding motif prote 99.7 1E-17 3.5E-22 130.5 10.4 84 103-187 4-87 (116)
141 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-17 4E-22 129.2 10.5 82 280-365 29-112 (119)
142 4a8x_A RNA-binding protein wit 99.7 7.3E-18 2.5E-22 124.7 9.1 82 105-186 3-85 (88)
143 1wf1_A RNA-binding protein RAL 99.7 2E-17 6.7E-22 127.8 11.8 96 258-362 6-102 (110)
144 3n9u_C Cleavage and polyadenyl 99.7 8E-18 2.7E-22 137.9 10.1 82 105-186 54-137 (156)
145 3q2s_C Cleavage and polyadenyl 99.7 3.1E-18 1.1E-22 149.7 8.1 82 105-186 67-150 (229)
146 2cpi_A CCR4-NOT transcription 99.7 1.1E-17 3.8E-22 129.3 10.3 82 280-361 13-102 (111)
147 1x4b_A Heterogeneous nuclear r 99.7 2E-17 6.8E-22 129.1 11.8 83 280-363 25-109 (116)
148 1x4g_A Nucleolysin TIAR; struc 99.7 2.2E-17 7.6E-22 127.3 11.9 80 280-363 23-102 (109)
149 3ucg_A Polyadenylate-binding p 99.7 1.3E-17 4.4E-22 123.6 10.2 79 281-360 5-85 (89)
150 3ulh_A THO complex subunit 4; 99.7 1.3E-17 4.4E-22 128.2 10.5 80 280-359 27-107 (107)
151 2kxn_B Transformer-2 protein h 99.7 6.9E-18 2.4E-22 133.9 9.2 82 280-361 44-127 (129)
152 2dgv_A HnRNP M, heterogeneous 99.7 1.5E-17 5.1E-22 124.1 10.5 83 103-187 5-87 (92)
153 2dhg_A TRNA selenocysteine ass 99.7 9.3E-18 3.2E-22 128.3 9.6 85 102-187 5-91 (104)
154 2la6_A RNA-binding protein FUS 99.7 1E-17 3.5E-22 126.8 9.7 79 280-358 11-99 (99)
155 1s79_A Lupus LA protein; RRM, 99.7 5.7E-18 1.9E-22 128.6 8.3 79 280-359 9-88 (103)
156 2cpy_A RNA-binding protein 12; 99.7 3.5E-18 1.2E-22 132.8 7.2 83 280-363 13-97 (114)
157 3p5t_L Cleavage and polyadenyl 99.7 2E-18 6.7E-23 128.3 5.5 80 283-362 2-85 (90)
158 2khc_A Testis-specific RNP-typ 99.7 7.1E-18 2.4E-22 132.1 8.8 82 103-184 37-118 (118)
159 2cpd_A Apobec-1 stimulating pr 99.7 6E-17 2E-21 122.5 13.6 77 280-362 13-91 (99)
160 1p1t_A Cleavage stimulation fa 99.7 8.4E-18 2.9E-22 128.6 8.9 83 105-187 7-89 (104)
161 2ek1_A RNA-binding protein 12; 99.7 5.3E-18 1.8E-22 127.4 7.7 81 105-185 14-94 (95)
162 1why_A Hypothetical protein ri 99.7 3E-17 1E-21 123.7 11.8 78 280-361 15-94 (97)
163 2dh8_A DAZ-associated protein 99.7 1.3E-17 4.5E-22 127.7 9.8 83 280-363 14-98 (105)
164 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-17 4.7E-22 127.3 9.9 82 104-187 13-95 (104)
165 2mss_A Protein (musashi1); RNA 99.7 4.7E-18 1.6E-22 121.7 6.8 75 108-183 1-75 (75)
166 2dnp_A RNA-binding protein 14; 99.7 3.4E-17 1.2E-21 121.6 11.7 77 280-362 7-83 (90)
167 1sjq_A Polypyrimidine tract-bi 99.7 9.9E-18 3.4E-22 126.3 8.8 80 102-187 12-93 (105)
168 3r27_A HnRNP L, heterogeneous 99.7 2.5E-17 8.6E-22 122.7 10.8 78 103-186 18-97 (100)
169 2cqd_A RNA-binding region cont 99.7 1.4E-17 4.9E-22 129.9 9.9 82 104-186 15-96 (116)
170 3ex7_B RNA-binding protein 8A; 99.7 1.3E-17 4.5E-22 132.2 9.8 85 103-187 19-103 (126)
171 2jvr_A Nucleolar protein 3; RN 99.7 2E-17 6.8E-22 126.9 10.4 79 280-360 26-105 (111)
172 2hvz_A Splicing factor, argini 99.7 1.1E-17 3.7E-22 127.2 8.8 84 107-195 1-100 (101)
173 2dnn_A RNA-binding protein 12; 99.7 1E-17 3.4E-22 128.3 8.6 81 280-362 14-95 (109)
174 2cpj_A Non-POU domain-containi 99.7 2.6E-17 8.9E-22 124.5 10.9 79 280-362 13-91 (99)
175 2dh8_A DAZ-associated protein 99.7 8.5E-18 2.9E-22 128.7 8.2 84 103-187 13-96 (105)
176 2cqp_A RNA-binding protein 12; 99.7 8.4E-18 2.9E-22 127.0 8.0 83 104-186 13-95 (98)
177 2dgw_A Probable RNA-binding pr 99.7 2.9E-17 9.9E-22 122.2 10.7 81 103-186 7-87 (91)
178 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-17 4.7E-22 128.2 9.1 86 101-187 20-105 (109)
179 2cq3_A RNA-binding protein 9; 99.7 4.6E-17 1.6E-21 124.1 12.0 83 103-187 12-94 (103)
180 1u6f_A Tcubp1, RNA-binding pro 99.7 2.3E-17 7.7E-22 133.2 10.8 85 103-187 39-123 (139)
181 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.5E-18 1.6E-22 122.4 6.0 76 107-183 1-76 (77)
182 1p1t_A Cleavage stimulation fa 99.7 1.8E-18 6.1E-23 132.3 4.0 85 280-364 6-92 (104)
183 2khc_A Testis-specific RNP-typ 99.7 2.2E-17 7.4E-22 129.3 10.3 79 280-358 38-118 (118)
184 2nlw_A Eukaryotic translation 99.7 2.3E-17 7.8E-22 126.2 10.1 81 280-360 13-100 (105)
185 2cqi_A Nucleolysin TIAR; RNA r 99.7 4E-17 1.4E-21 124.5 11.3 83 103-187 12-94 (103)
186 2m2b_A RNA-binding protein 10; 99.7 1.4E-17 4.8E-22 132.8 9.1 83 280-363 21-111 (131)
187 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.6E-18 2.6E-22 127.7 7.1 83 102-186 15-98 (100)
188 1x4d_A Matrin 3; structural ge 99.7 1.6E-17 5.6E-22 125.1 8.9 79 105-189 14-95 (102)
189 2rs2_A Musashi-1, RNA-binding 99.7 4E-17 1.4E-21 125.6 11.3 83 280-363 23-107 (109)
190 1h2v_Z 20 kDa nuclear CAP bind 99.7 4E-17 1.4E-21 134.4 12.0 86 102-187 35-120 (156)
191 2xnq_A Nuclear polyadenylated 99.7 4.6E-17 1.6E-21 122.5 11.3 76 280-361 20-96 (97)
192 2wbr_A GW182, gawky, LD47780P; 99.7 1.7E-17 6E-22 118.9 8.4 74 105-184 6-79 (89)
193 2dis_A Unnamed protein product 99.7 5.5E-17 1.9E-21 125.1 12.0 84 280-363 6-95 (109)
194 2do0_A HnRNP M, heterogeneous 99.7 5.4E-17 1.9E-21 126.2 12.0 82 104-186 13-94 (114)
195 2dgx_A KIAA0430 protein; RRM d 99.7 2.8E-17 9.6E-22 123.5 10.0 81 104-187 7-91 (96)
196 1wez_A HnRNP H', FTP-3, hetero 99.7 1.6E-17 5.4E-22 126.1 8.6 82 102-186 11-92 (102)
197 2cqg_A TDP-43, TAR DNA-binding 99.7 8.6E-17 3E-21 122.6 12.6 82 280-363 13-96 (103)
198 2kt5_A RNA and export factor-b 99.7 4.7E-17 1.6E-21 128.6 11.5 85 103-188 32-116 (124)
199 2dgw_A Probable RNA-binding pr 99.7 4E-17 1.4E-21 121.5 10.4 79 280-360 8-87 (91)
200 2cqg_A TDP-43, TAR DNA-binding 99.7 6.1E-17 2.1E-21 123.5 11.7 83 104-188 13-95 (103)
201 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9E-18 3.1E-22 127.3 7.0 79 280-360 17-98 (100)
202 2kvi_A Nuclear polyadenylated 99.7 1.5E-17 5.1E-22 125.1 8.0 78 280-363 8-86 (96)
203 2cqh_A IGF-II mRNA-binding pro 99.7 2.2E-17 7.4E-22 123.5 8.8 79 280-363 6-86 (93)
204 2a3j_A U1 small nuclear ribonu 99.7 3.5E-17 1.2E-21 128.8 10.4 82 280-362 27-112 (127)
205 2cq4_A RNA binding motif prote 99.7 1.4E-17 4.8E-22 129.6 7.9 81 105-186 24-104 (114)
206 3s7r_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 120.1 10.1 77 280-357 9-87 (87)
207 1x4a_A Splicing factor, argini 99.7 6E-17 2E-21 124.9 11.2 82 103-187 19-100 (109)
208 2m2b_A RNA-binding protein 10; 99.7 1.2E-17 4.2E-22 133.2 7.5 83 105-188 22-110 (131)
209 2hgl_A HNRPF protein, heteroge 99.7 1.6E-17 5.4E-22 132.3 8.1 82 102-185 40-124 (136)
210 2ytc_A PRE-mRNA-splicing facto 99.7 4.5E-17 1.6E-21 119.5 9.9 75 280-358 10-85 (85)
211 2cqp_A RNA-binding protein 12; 99.7 1.9E-17 6.3E-22 125.2 8.0 81 280-360 13-95 (98)
212 2db1_A Heterogeneous nuclear r 99.7 8.3E-18 2.8E-22 131.4 6.1 81 280-361 15-99 (118)
213 1x4f_A Matrin 3; structural ge 99.7 2.6E-17 8.8E-22 125.8 8.6 80 280-363 23-105 (112)
214 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-16 5.8E-21 131.0 14.3 133 135-273 2-153 (158)
215 1x5o_A RNA binding motif, sing 99.7 8.5E-17 2.9E-21 125.1 11.8 82 104-186 23-112 (114)
216 1whx_A Hypothetical protein ri 99.7 5.3E-17 1.8E-21 125.3 10.4 79 280-362 8-86 (111)
217 1wg5_A Heterogeneous nuclear r 99.7 7.6E-17 2.6E-21 123.0 11.2 82 280-362 13-96 (104)
218 1wg5_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 125.2 9.0 81 104-186 13-94 (104)
219 2cpx_A Hypothetical protein FL 99.7 5.9E-17 2E-21 126.2 10.7 82 280-363 23-108 (115)
220 2ki2_A SS-DNA binding protein 99.7 4.5E-18 1.5E-22 126.4 4.1 80 107-187 2-81 (90)
221 2nlw_A Eukaryotic translation 99.7 2.2E-17 7.4E-22 126.3 8.0 82 104-187 13-101 (105)
222 2db1_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 129.1 8.1 81 103-185 14-97 (118)
223 2jvo_A Nucleolar protein 3; nu 99.7 4.8E-17 1.6E-21 124.9 9.9 77 280-362 29-105 (108)
224 2cpy_A RNA-binding protein 12; 99.7 1.6E-17 5.3E-22 129.2 7.2 82 103-186 12-94 (114)
225 2dis_A Unnamed protein product 99.7 3.4E-17 1.1E-21 126.3 9.0 86 103-188 5-94 (109)
226 2cpi_A CCR4-NOT transcription 99.7 3.8E-17 1.3E-21 126.3 9.2 84 105-188 14-103 (111)
227 2mss_A Protein (musashi1); RNA 99.7 2E-17 6.8E-22 118.4 7.1 73 284-357 1-75 (75)
228 2cpj_A Non-POU domain-containi 99.7 5.2E-17 1.8E-21 122.9 9.8 85 103-193 12-96 (99)
229 1wez_A HnRNP H', FTP-3, hetero 99.7 3.4E-17 1.2E-21 124.3 8.8 79 280-360 13-92 (102)
230 3n9u_C Cleavage and polyadenyl 99.7 3.9E-17 1.3E-21 133.8 9.6 81 281-361 54-138 (156)
231 1x4b_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 127.5 9.1 83 105-188 26-108 (116)
232 3lqv_A PRE-mRNA branch site pr 99.7 4.2E-17 1.4E-21 127.0 9.3 83 280-363 6-88 (115)
233 1x4e_A RNA binding motif, sing 99.7 7E-18 2.4E-22 123.9 4.5 80 280-359 3-84 (85)
234 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.3E-22 125.3 6.0 80 280-359 13-94 (95)
235 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-16 3.9E-21 129.2 12.0 79 279-357 60-140 (140)
236 2fc8_A NCL protein; structure 99.7 8.3E-17 2.8E-21 122.5 10.4 80 280-362 13-94 (102)
237 2lea_A Serine/arginine-rich sp 99.7 1.3E-17 4.5E-22 133.4 6.2 84 104-187 45-128 (135)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.8E-17 2E-21 131.0 10.1 81 103-183 60-140 (140)
239 2err_A Ataxin-2-binding protei 99.7 5.3E-17 1.8E-21 125.0 9.2 83 102-186 25-107 (109)
240 2jwn_A Embryonic polyadenylate 99.7 5.3E-17 1.8E-21 128.3 9.3 82 105-187 35-116 (124)
241 1sjr_A Polypyrimidine tract-bi 99.7 1.2E-16 4.3E-21 129.6 11.6 80 281-362 45-126 (164)
242 2krb_A Eukaryotic translation 99.7 1.5E-17 5.2E-22 120.9 5.6 73 106-180 1-80 (81)
243 2jwn_A Embryonic polyadenylate 99.7 7.5E-17 2.6E-21 127.4 10.1 81 280-361 34-116 (124)
244 1nu4_A U1A RNA binding domain; 99.7 4.9E-17 1.7E-21 122.6 8.6 81 280-362 6-91 (97)
245 1x4f_A Matrin 3; structural ge 99.7 3.8E-17 1.3E-21 124.8 8.0 84 103-192 22-108 (112)
246 2krb_A Eukaryotic translation 99.7 2.2E-17 7.7E-22 119.9 6.4 72 283-354 2-80 (81)
247 2dnn_A RNA-binding protein 12; 99.7 3E-17 1E-21 125.7 7.3 78 106-186 16-93 (109)
248 2ki2_A SS-DNA binding protein 99.7 1.2E-17 4.2E-22 124.0 4.8 79 283-362 2-82 (90)
249 2cq1_A PTB-like protein L; RRM 99.7 1.5E-16 5.1E-21 120.0 10.8 77 104-186 13-91 (101)
250 2fc9_A NCL protein; structure 99.7 9.2E-17 3.1E-21 122.0 9.8 81 103-187 12-92 (101)
251 1wel_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 131.1 5.8 83 103-186 22-104 (124)
252 2la4_A Nuclear and cytoplasmic 99.7 6.1E-17 2.1E-21 123.0 8.6 76 281-360 26-101 (101)
253 2a3j_A U1 small nuclear ribonu 99.7 9.5E-17 3.3E-21 126.3 10.0 82 104-188 27-112 (127)
254 2e5g_A U6 snRNA-specific termi 99.7 1.1E-16 3.7E-21 119.8 9.9 80 280-363 6-85 (94)
255 2lcw_A RNA-binding protein FUS 99.5 1.8E-18 6E-23 135.1 0.0 84 280-363 5-98 (116)
256 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3E-17 1E-21 118.1 6.4 74 283-357 1-76 (77)
257 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.7E-21 123.7 9.9 79 103-187 28-108 (119)
258 1x5o_A RNA binding motif, sing 99.7 1.5E-16 5.1E-21 123.7 10.8 81 280-360 23-112 (114)
259 2hgn_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 132.7 5.1 80 280-361 44-124 (139)
260 1iqt_A AUF1, heterogeneous nuc 99.7 2.1E-17 7.1E-22 118.3 5.1 75 108-183 1-75 (75)
261 2e5j_A Methenyltetrahydrofolat 99.7 1.1E-16 3.8E-21 120.5 9.4 79 280-361 17-95 (97)
262 1fjc_A Nucleolin RBD2, protein 99.7 4.9E-17 1.7E-21 122.3 7.4 81 280-363 14-94 (96)
263 2la4_A Nuclear and cytoplasmic 99.7 1.7E-16 5.8E-21 120.5 10.3 83 97-185 18-100 (101)
264 1wex_A Hypothetical protein (r 99.7 1.6E-16 5.5E-21 120.5 10.1 78 104-187 13-92 (104)
265 1wg1_A KIAA1579 protein, homol 99.7 1.5E-16 5.1E-21 117.5 9.4 84 104-194 3-86 (88)
266 2dnq_A RNA-binding protein 4B; 99.7 2.1E-16 7.2E-21 117.3 10.3 78 103-188 5-82 (90)
267 2lmi_A GRSF-1, G-rich sequence 99.7 2.5E-17 8.7E-22 126.4 5.3 81 103-185 8-91 (107)
268 2fc8_A NCL protein; structure 99.7 2.6E-16 8.9E-21 119.7 10.8 82 103-187 12-93 (102)
269 1fj7_A Nucleolin RBD1, protein 99.7 2.6E-17 8.8E-22 125.1 4.9 82 280-363 15-98 (101)
270 1why_A Hypothetical protein ri 99.7 2.7E-16 9.1E-21 118.5 10.4 79 103-187 14-94 (97)
271 2hgl_A HNRPF protein, heteroge 99.7 4.2E-17 1.4E-21 129.9 6.3 81 280-361 42-126 (136)
272 1x5p_A Negative elongation fac 99.7 8E-16 2.7E-20 115.8 13.0 78 280-363 13-90 (97)
273 1nu4_A U1A RNA binding domain; 99.7 9.7E-17 3.3E-21 120.9 7.8 84 102-188 4-91 (97)
274 1x4g_A Nucleolysin TIAR; struc 99.7 2.4E-16 8.3E-21 121.4 10.1 81 102-188 21-101 (109)
275 2diu_A KIAA0430 protein; struc 99.7 3.8E-16 1.3E-20 113.0 10.3 76 280-363 6-87 (96)
276 2cq2_A Hypothetical protein LO 99.7 3E-16 1E-20 119.9 10.4 77 280-360 23-106 (114)
277 2xnq_A Nuclear polyadenylated 99.7 4E-16 1.4E-20 117.3 10.9 79 100-186 16-95 (97)
278 1x4c_A Splicing factor, argini 99.7 3.3E-16 1.1E-20 120.4 10.7 78 103-187 12-94 (108)
279 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-17 5.2E-22 126.3 3.1 82 104-187 15-96 (101)
280 2e44_A Insulin-like growth fac 99.7 3.1E-16 1.1E-20 117.9 10.0 80 280-361 13-93 (96)
281 2diu_A KIAA0430 protein; struc 99.7 3.7E-16 1.3E-20 113.0 9.8 81 103-193 6-91 (96)
282 3beg_B Splicing factor, argini 99.7 2.1E-16 7.3E-21 122.8 9.1 76 280-360 14-94 (115)
283 2lmi_A GRSF-1, G-rich sequence 99.7 4.4E-17 1.5E-21 125.1 5.1 81 280-361 9-93 (107)
284 2dha_A FLJ20171 protein; RRM d 99.7 7E-17 2.4E-21 126.3 6.3 80 104-185 21-104 (123)
285 2jvr_A Nucleolar protein 3; RN 99.7 1.6E-16 5.3E-21 121.9 8.1 82 101-186 23-105 (111)
286 2ytc_A PRE-mRNA-splicing facto 99.7 2.8E-16 9.4E-21 115.3 9.0 76 103-184 9-85 (85)
287 1iqt_A AUF1, heterogeneous nuc 99.7 9.1E-17 3.1E-21 114.9 6.2 73 284-357 1-75 (75)
288 2e5j_A Methenyltetrahydrofolat 99.7 2.8E-16 9.5E-21 118.3 8.8 79 104-187 17-95 (97)
289 2cpx_A Hypothetical protein FL 99.7 6E-17 2.1E-21 126.2 5.0 80 104-187 23-106 (115)
290 2jvo_A Nucleolar protein 3; nu 99.7 4.8E-16 1.7E-20 119.2 10.0 78 102-187 27-104 (108)
291 2hgm_A HNRPF protein, heteroge 99.7 1.4E-16 4.7E-21 124.8 6.8 80 103-185 39-120 (126)
292 2f3j_A RNA and export factor b 99.7 3.5E-16 1.2E-20 131.0 9.7 86 102-188 84-169 (177)
293 2j8a_A Histone-lysine N-methyl 99.7 1.8E-16 6.2E-21 121.3 7.2 80 107-186 3-96 (136)
294 2lcw_A RNA-binding protein FUS 99.5 9.2E-18 3.2E-22 131.0 0.0 84 104-187 5-96 (116)
295 1wg1_A KIAA1579 protein, homol 99.6 3E-16 1E-20 115.8 8.1 77 280-361 3-79 (88)
296 1fjc_A Nucleolin RBD2, protein 99.6 1.8E-16 6.2E-21 119.2 7.0 78 105-187 15-92 (96)
297 2dgt_A RNA-binding protein 30; 99.6 7.6E-16 2.6E-20 114.7 10.2 79 102-188 6-84 (92)
298 2xs2_A Deleted in azoospermia- 99.6 1.1E-16 3.7E-21 121.9 5.5 81 105-188 8-88 (102)
299 3zzy_A Polypyrimidine tract-bi 99.6 7.2E-16 2.5E-20 120.5 10.2 78 282-362 28-108 (130)
300 2dnp_A RNA-binding protein 14; 99.6 7.9E-16 2.7E-20 114.1 9.8 77 103-187 6-82 (90)
301 2xs2_A Deleted in azoospermia- 99.6 2.6E-16 8.8E-21 119.7 7.2 82 280-363 7-89 (102)
302 2hgn_A Heterogeneous nuclear r 99.6 8E-17 2.7E-21 128.7 4.4 81 103-186 43-123 (139)
303 2f3j_A RNA and export factor b 99.6 6.3E-16 2.1E-20 129.5 10.0 83 280-362 86-169 (177)
304 3d2w_A TAR DNA-binding protein 99.6 1.3E-15 4.5E-20 112.4 10.5 76 280-362 9-86 (89)
305 2dgu_A Heterogeneous nuclear r 99.6 9.2E-16 3.1E-20 116.8 9.9 76 104-187 9-84 (103)
306 1wel_A RNA-binding protein 12; 99.6 1.3E-16 4.6E-21 125.9 5.4 81 280-361 23-105 (124)
307 1wf0_A TDP-43, TAR DNA-binding 99.6 5.4E-16 1.8E-20 114.5 8.0 79 280-363 3-81 (88)
308 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-16 6.6E-21 123.7 5.7 81 280-361 21-106 (123)
309 1whx_A Hypothetical protein ri 99.6 5.4E-16 1.9E-20 119.6 8.1 75 105-185 9-83 (111)
310 2i2y_A Fusion protein consists 99.6 7.6E-16 2.6E-20 125.9 9.4 81 102-187 69-149 (150)
311 2cpd_A Apobec-1 stimulating pr 99.6 1.8E-15 6.1E-20 114.4 10.8 77 104-188 13-91 (99)
312 2e5i_A Heterogeneous nuclear r 99.6 2.2E-15 7.6E-20 117.4 11.5 76 283-362 26-104 (124)
313 2kvi_A Nuclear polyadenylated 99.6 5.6E-16 1.9E-20 116.4 7.9 77 103-187 7-84 (96)
314 2hgm_A HNRPF protein, heteroge 99.6 3.6E-16 1.2E-20 122.4 7.0 80 280-361 40-122 (126)
315 2pe8_A Splicing factor 45; RRM 99.6 1.5E-15 5.1E-20 115.4 10.0 83 280-362 6-96 (105)
316 3egn_A RNA-binding protein 40; 99.6 3.8E-16 1.3E-20 126.6 6.9 83 280-363 43-133 (143)
317 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-15 5.2E-20 117.8 9.8 78 104-184 6-86 (114)
318 4f02_A Polyadenylate-binding p 99.6 1.4E-15 4.9E-20 131.9 10.7 83 280-362 13-97 (213)
319 3md3_A Nuclear and cytoplasmic 99.6 2.5E-15 8.5E-20 124.8 11.7 82 103-184 84-165 (166)
320 2cqh_A IGF-II mRNA-binding pro 99.6 6.9E-16 2.4E-20 115.2 7.2 78 103-187 5-84 (93)
321 2e44_A Insulin-like growth fac 99.6 1.2E-15 4E-20 114.7 8.5 78 105-186 14-92 (96)
322 3egn_A RNA-binding protein 40; 99.6 2.6E-16 9E-21 127.5 5.0 81 103-186 42-130 (143)
323 2voo_A Lupus LA protein; RNA-b 99.6 4.2E-15 1.4E-19 126.3 12.4 121 239-360 63-187 (193)
324 1wf1_A RNA-binding protein RAL 99.6 1.7E-15 5.8E-20 116.8 8.9 74 105-186 26-100 (110)
325 1b7f_A Protein (SXL-lethal pro 99.6 3.5E-15 1.2E-19 124.3 11.5 83 281-363 2-86 (168)
326 2hzc_A Splicing factor U2AF 65 99.6 3.3E-15 1.1E-19 110.0 9.8 72 280-356 4-86 (87)
327 2e5g_A U6 snRNA-specific termi 99.6 2.5E-15 8.4E-20 112.4 9.1 77 104-186 6-82 (94)
328 3tyt_A Heterogeneous nuclear r 99.6 4E-15 1.4E-19 127.9 11.1 78 281-361 3-81 (205)
329 2g4b_A Splicing factor U2AF 65 99.6 3.8E-15 1.3E-19 124.6 10.6 79 105-183 93-171 (172)
330 1fxl_A Paraneoplastic encephal 99.6 4.4E-15 1.5E-19 123.4 10.9 81 282-362 2-84 (167)
331 3pgw_S U1-70K; protein-RNA com 99.6 2.4E-15 8.2E-20 143.6 10.5 82 105-186 101-182 (437)
332 2qfj_A FBP-interacting repress 99.6 7.3E-15 2.5E-19 127.6 12.1 84 104-187 123-206 (216)
333 2pe8_A Splicing factor 45; RRM 99.6 8.3E-15 2.8E-19 111.3 10.7 83 103-185 5-93 (105)
334 1x5p_A Negative elongation fac 99.6 7.3E-15 2.5E-19 110.5 10.3 77 104-188 13-89 (97)
335 2dit_A HIV TAT specific factor 99.6 1.4E-14 4.8E-19 111.9 12.1 82 280-363 13-105 (112)
336 2yh0_A Splicing factor U2AF 65 99.6 5.8E-15 2E-19 126.5 10.8 85 103-187 111-195 (198)
337 2cq2_A Hypothetical protein LO 99.6 3.5E-15 1.2E-19 113.9 8.2 78 101-184 20-104 (114)
338 3v4m_A Splicing factor U2AF 65 99.6 5E-15 1.7E-19 112.6 9.0 82 280-361 3-98 (105)
339 2j8a_A Histone-lysine N-methyl 99.6 4.2E-15 1.4E-19 113.8 8.4 78 283-360 3-96 (136)
340 3d2w_A TAR DNA-binding protein 99.6 7E-15 2.4E-19 108.5 9.0 77 102-187 7-85 (89)
341 2cjk_A Nuclear polyadenylated 99.6 2.5E-15 8.5E-20 125.1 7.4 81 105-186 86-166 (167)
342 2bz2_A Negative elongation fac 99.6 5.1E-15 1.8E-19 115.8 8.6 78 280-363 37-114 (121)
343 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-14 4.2E-19 113.5 10.6 81 102-187 24-107 (130)
344 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 118.0 10.7 81 103-187 43-125 (164)
345 3beg_B Splicing factor, argini 99.6 4.3E-15 1.5E-19 115.4 7.8 74 105-185 15-93 (115)
346 2hzc_A Splicing factor U2AF 65 99.6 5.8E-15 2E-19 108.7 7.6 71 105-182 5-86 (87)
347 1l3k_A Heterogeneous nuclear r 99.6 1.4E-14 4.7E-19 123.9 10.6 84 104-188 102-185 (196)
348 2e5i_A Heterogeneous nuclear r 99.5 5.1E-14 1.7E-18 109.7 11.6 74 108-187 27-103 (124)
349 2dnl_A Cytoplasmic polyadenyla 99.5 4.4E-14 1.5E-18 109.5 11.0 78 280-360 6-88 (114)
350 2adc_A Polypyrimidine tract-bi 99.5 3.8E-14 1.3E-18 124.3 11.7 80 279-361 31-111 (229)
351 2voo_A Lupus LA protein; RNA-b 99.5 2.6E-14 8.9E-19 121.4 10.1 79 105-185 108-186 (193)
352 3pgw_A U1-A; protein-RNA compl 99.5 1.4E-13 4.8E-18 124.7 15.6 81 280-361 7-91 (282)
353 3nmr_A Cugbp ELAV-like family 99.5 4.5E-14 1.5E-18 118.3 11.1 79 105-184 94-175 (175)
354 1wf0_A TDP-43, TAR DNA-binding 99.5 8E-15 2.7E-19 108.1 5.7 78 104-188 3-80 (88)
355 1qm9_A Polypyrimidine tract-bi 99.5 5.4E-14 1.8E-18 120.5 11.2 77 282-361 3-80 (198)
356 2bz2_A Negative elongation fac 99.5 3.6E-14 1.2E-18 111.0 9.2 78 102-187 35-112 (121)
357 3u1l_A PRE-mRNA-splicing facto 99.5 2.6E-14 9E-19 124.0 8.8 77 280-360 132-229 (240)
358 1fje_B Nucleolin RBD12, protei 99.5 4.8E-14 1.7E-18 118.2 8.9 77 105-186 98-174 (175)
359 3ue2_A Poly(U)-binding-splicin 99.5 3.5E-14 1.2E-18 109.9 6.9 82 280-361 18-110 (118)
360 2dit_A HIV TAT specific factor 99.5 1.6E-13 5.4E-18 106.0 10.4 86 101-190 10-106 (112)
361 1jmt_A Splicing factor U2AF 35 99.5 1.5E-14 5.2E-19 109.7 4.5 72 287-358 20-104 (104)
362 3u1l_A PRE-mRNA-splicing facto 99.5 6.6E-14 2.2E-18 121.5 8.5 80 102-187 130-230 (240)
363 3sde_A Paraspeckle component 1 99.5 2.2E-13 7.5E-18 121.9 11.5 77 280-360 20-96 (261)
364 3s6e_A RNA-binding protein 39; 99.5 2.8E-13 9.7E-18 104.0 10.0 82 280-363 5-96 (114)
365 3v4m_A Splicing factor U2AF 65 99.4 2E-13 7E-18 103.6 8.2 81 105-185 4-96 (105)
366 2d9o_A DNAJ (HSP40) homolog, s 99.4 1E-12 3.5E-17 98.4 11.1 75 283-362 11-92 (100)
367 1jmt_A Splicing factor U2AF 35 99.4 1.2E-13 3.9E-18 104.9 4.2 72 111-183 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.4 7.4E-13 2.5E-17 102.4 8.8 81 105-185 19-108 (118)
369 3tht_A Alkylated DNA repair pr 99.3 4E-12 1.4E-16 116.3 9.8 75 280-358 16-97 (345)
370 2dnr_A Synaptojanin-1; RRM dom 99.3 1.3E-11 4.3E-16 88.5 9.0 74 280-360 5-86 (91)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-11 6.3E-16 91.5 9.9 75 106-187 10-91 (100)
372 3s6e_A RNA-binding protein 39; 99.2 4.1E-11 1.4E-15 92.0 9.5 79 103-185 4-92 (114)
373 3tht_A Alkylated DNA repair pr 99.2 2.9E-11 1E-15 110.6 8.2 78 101-184 13-97 (345)
374 1owx_A Lupus LA protein, SS-B, 99.2 9.6E-11 3.3E-15 89.9 9.4 76 280-359 16-95 (121)
375 1ufw_A Synaptojanin 2; RNP dom 99.1 1.9E-10 6.5E-15 82.8 6.3 73 280-359 13-94 (95)
376 1owx_A Lupus LA protein, SS-B, 99.1 5.4E-10 1.8E-14 85.7 9.1 75 103-183 15-93 (121)
377 2dnr_A Synaptojanin-1; RRM dom 99.0 5.2E-10 1.8E-14 80.2 7.4 73 104-185 5-85 (91)
378 3dxb_A Thioredoxin N-terminall 98.9 3.4E-09 1.2E-13 92.1 10.0 69 293-361 140-214 (222)
379 2l9w_A U4/U6 snRNA-associated- 98.9 8.2E-09 2.8E-13 75.6 8.9 71 282-356 21-96 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 3.2E-09 1.1E-13 76.4 5.2 75 101-184 10-93 (95)
381 3dxb_A Thioredoxin N-terminall 98.7 2.8E-08 9.5E-13 86.3 9.0 84 102-185 120-212 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.5 4.2E-07 1.4E-11 66.6 8.9 72 105-182 20-96 (117)
383 1wey_A Calcipressin 1; structu 98.1 1.2E-05 4.1E-10 58.9 8.6 75 282-360 5-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.1 3E-05 1E-09 56.5 10.4 87 104-199 6-99 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.0 8.4E-05 2.9E-09 54.1 11.1 76 281-363 7-87 (104)
386 1uw4_A UPF3X; nonsense mediate 97.8 7.1E-05 2.4E-09 53.9 7.6 68 107-174 2-71 (91)
387 1wwh_A Nucleoporin 35, nucleop 97.7 0.00019 6.4E-09 54.2 8.4 74 280-359 22-96 (119)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00027 9.3E-09 50.8 8.8 78 283-360 2-88 (91)
389 1wey_A Calcipressin 1; structu 97.6 8.3E-05 2.8E-09 54.4 5.5 74 106-185 5-83 (104)
390 1whv_A Poly(A)-specific ribonu 97.3 0.00072 2.5E-08 48.6 6.7 58 103-169 13-70 (100)
391 2l08_A Regulator of nonsense t 97.1 0.00056 1.9E-08 49.5 4.4 69 106-174 9-79 (97)
392 1wwh_A Nucleoporin 35, nucleop 97.0 0.002 7E-08 48.5 7.3 71 105-183 23-94 (119)
393 2l08_A Regulator of nonsense t 97.0 0.0022 7.5E-08 46.4 6.9 79 281-359 8-95 (97)
394 3p3d_A Nucleoporin 53; structu 96.9 0.0011 3.8E-08 50.6 5.2 78 283-362 8-101 (132)
395 3ctr_A Poly(A)-specific ribonu 96.9 0.0011 3.8E-08 47.7 4.7 53 108-169 8-60 (101)
396 3ctr_A Poly(A)-specific ribonu 96.8 0.0015 5.3E-08 47.0 4.7 54 283-343 7-60 (101)
397 1whv_A Poly(A)-specific ribonu 96.8 0.0046 1.6E-07 44.4 6.8 54 283-343 17-70 (100)
398 3p3d_A Nucleoporin 53; structu 96.0 0.0061 2.1E-07 46.5 4.0 78 105-184 6-97 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.6 0.0057 1.9E-07 57.9 3.1 55 283-341 54-108 (464)
400 3pq1_A Poly(A) RNA polymerase; 95.4 0.009 3.1E-07 56.5 3.6 56 105-166 52-107 (464)
401 3d45_A Poly(A)-specific ribonu 85.6 2.3 8E-05 40.9 8.2 55 107-170 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 84.9 2.5 8.7E-05 40.6 8.1 55 282-343 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 77.3 6 0.0002 26.7 5.7 60 292-358 11-75 (76)
404 4eyt_A Telomerase associated p 74.1 19 0.00066 25.0 8.9 57 280-342 10-66 (129)
405 2g0c_A ATP-dependent RNA helic 67.8 13 0.00045 24.9 5.7 59 117-184 12-75 (76)
406 4e8u_A Putative uncharacterize 64.7 11 0.00039 30.0 5.3 57 283-340 13-81 (172)
407 3j21_T 50S ribosomal protein L 57.7 30 0.001 24.1 5.9 57 285-342 25-83 (86)
408 2cu1_A Mitogen-activated prote 51.0 64 0.0022 23.0 6.7 70 286-362 20-90 (103)
409 4e8u_A Putative uncharacterize 40.4 62 0.0021 25.8 5.9 55 108-165 14-80 (172)
410 2pk2_A Cyclin-T1, protein TAT; 39.4 6.2 0.00021 36.0 0.0 13 293-305 228-240 (358)
411 4eyt_A Telomerase associated p 38.8 95 0.0033 21.5 8.0 59 104-170 10-68 (129)
412 1vq8_S 50S ribosomal protein L 38.1 58 0.002 22.5 4.8 55 285-340 24-80 (85)
413 4a17_R RPL23A, 60S ribosomal p 31.7 89 0.003 24.2 5.3 56 285-341 89-146 (150)
414 3u5e_X 60S ribosomal protein L 31.2 91 0.0031 23.9 5.3 56 285-341 81-138 (142)
415 4fdd_B RNA-binding protein FUS 29.5 32 0.0011 18.1 1.7 10 386-395 7-16 (29)
416 2lt8_A Eurocin; A/B-fold, cyst 27.4 9.5 0.00033 21.1 -0.5 12 390-401 20-31 (42)
417 2w7a_A LINE-1 ORF1P; RNA-bindi 26.7 1.3E+02 0.0043 21.6 5.1 74 282-355 3-98 (100)
418 3ced_A Methionine import ATP-b 26.6 1.3E+02 0.0044 21.2 5.3 70 99-170 13-87 (98)
419 3tj1_A RNA polymerase I-specif 23.3 16 0.00054 36.0 -0.3 65 9-73 271-338 (649)
420 3iz5_X 60S ribosomal protein L 23.1 99 0.0034 24.0 4.2 56 285-341 91-148 (152)
421 2zkr_s 60S ribosomal protein L 22.9 1.5E+02 0.0052 23.1 5.3 56 285-341 95-152 (156)
422 3fry_A Probable copper-exporti 22.2 1.6E+02 0.0054 18.7 5.7 54 283-341 7-60 (73)
423 1twf_C B44.5, DNA-directed RNA 21.5 20 0.00067 32.0 0.0 20 381-401 299-318 (318)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.2e-44 Score=329.06 Aligned_cols=245 Identities=22% Similarity=0.405 Sum_probs=225.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++|+++|+++|++|| |..+.+ ++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 4678999999999999999999999999 998888 566899999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
.+.++|||+|||..+++++|+++|..||. |..+.++.+ ..++.++|||||.|.+.+.|..|+..+++. .+.++.+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEEE
Confidence 99999999999999999999999999998 999999887 456889999999999999999999999764 66899999
Q ss_pred eeecCCCCCCCCcccccccceEEEccCCCCC-CHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHh
Q 015763 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~ 341 (401)
+.++.+..... .....++|||+|||..+ ++++|+++|++||.|..|.|..+..+. +|||||+|.+.++|.+|+..
T Consensus 169 v~~a~~~~~~~---~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 245 (284)
T 3smz_A 169 VHWTDAGQLTP---ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ 245 (284)
T ss_dssp EEECCGGGCCT---TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH
T ss_pred EEECCCCCCCc---ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH
Confidence 99998765432 22567899999999995 999999999999999999999988776 99999999999999999999
Q ss_pred hcCCeeCCeEEEEEeccCCCc
Q 015763 342 TEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~~~ 362 (401)
|||..|+|++|+|.|+.++..
T Consensus 246 l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 246 ADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HTTCEETTEECEEEECCSSSC
T ss_pred hCCCccCCeEEEEEEecCCCc
Confidence 999999999999999988754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2.9e-44 Score=329.61 Aligned_cols=252 Identities=19% Similarity=0.320 Sum_probs=214.4
Q ss_pred hcCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 99 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
....+...++|||+|||+++|+++|+.+|++||.|..|+++++..+ ++|||||+|.+.++|.+|+ .+++..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEE
Confidence 3444567899999999999999999999999999999999998743 5899999999999999999 589999999999
Q ss_pred EEEecccccccccCCCCCCCCHHHHHHHHHhhC-CceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCccc
Q 015763 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257 (401)
Q Consensus 179 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~ 257 (401)
.|.++. .++|||+|||..+++++|+++|..+| . |..+.++.+.. +.++|||||.|.+.+.|..|+..|++. .+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 999984 68999999999999999999999999 7 99999988753 678999999999999999999999764 56
Q ss_pred CCCCCeeeecCCCCCCCCc-ccccccceEEEccCCCC-CCHHHHHHHHhhcCCeeEEEecCCCC--CC-CCeEEEEeCCH
Q 015763 258 DGNTPTISWADPKSTPDHS-AAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAER 332 (401)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~v~nlp~~-~t~e~l~~~f~~~G~i~~v~i~~~~~--~~-kg~afV~f~~~ 332 (401)
.++.+.+.++.+....... ......++|||+|||.. +++++|+++|++||.|..|+|+++.. +. +|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 8899999999887665444 44566799999999999 99999999999999999999999876 55 89999999999
Q ss_pred HHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 333 ~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
++|.+|+ .|||..|.|++|+|.||.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.4e-36 Score=261.88 Aligned_cols=170 Identities=22% Similarity=0.440 Sum_probs=153.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++|+++|+++|++||.|.+|++++++.+++++|||||+|.+.++|.+||..+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
.....
T Consensus 94 ~~~~~--------------------------------------------------------------------------- 98 (213)
T 4f02_A 94 RDPSL--------------------------------------------------------------------------- 98 (213)
T ss_dssp CCTHH---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 32110
Q ss_pred eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcC
Q 015763 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g 344 (401)
.....++|||+|||..+++++|+++|++||.|..|+|+++..+++|||||+|.+.++|.+|+..|||
T Consensus 99 -------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 99 -------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp -------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred -------------cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 0012358999999999999999999999999999999988766699999999999999999999999
Q ss_pred CeeCCeEEEEEeccCCCc
Q 015763 345 YEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 345 ~~i~g~~l~v~~a~~~~~ 362 (401)
..|+|++|+|.||.++..
T Consensus 166 ~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CEETTEECEEEECCCHHH
T ss_pred CEECCEEEEEEEcCCCcc
Confidence 999999999999987644
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.9e-33 Score=239.66 Aligned_cols=178 Identities=22% Similarity=0.442 Sum_probs=148.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+++|+++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+||.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 445678999999999999999999999999999999999999999999999999999999999955 8999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
++.+.... . .
T Consensus 88 ~~~~~~~~----------------------------------~----~-------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDS----------------------------------Q----R-------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc----------------------------------c----c--------------------------------
Confidence 87543210 0 0
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHH
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAV 339 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~ 339 (401)
.......++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+
T Consensus 98 --------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 98 --------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp -------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred --------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 0000234799999999999999999999999999999999886443 899999999999999999
Q ss_pred HhhcCCeeCCeEEEEEeccCCCcCCC
Q 015763 340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365 (401)
Q Consensus 340 ~~l~g~~i~g~~l~v~~a~~~~~~~~ 365 (401)
.. ++..|+|+.|.|.||.++.....
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HC-SCCEETTEECEEEECC-------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhcc
Confidence 96 89999999999999998766543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-33 Score=231.09 Aligned_cols=164 Identities=18% Similarity=0.363 Sum_probs=147.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (401)
++|||+|||+++|+++|+++|++||.|..|.+++++. ++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999875 889999999999999999999999999999999999987542
Q ss_pred cccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeee
Q 015763 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (401)
Q Consensus 187 ~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~ 266 (401)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred cCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcC
Q 015763 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEK 344 (401)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g 344 (401)
......++|+|+|||..+++++|+++|++||.|..|.+..+..++ +|||||+|.+.++|.+|+..|||
T Consensus 82 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 82 ----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp ----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 000334689999999999999999999999999999999885543 89999999999999999999999
Q ss_pred CeeCCeEEEEEeccC
Q 015763 345 YEIDGQVLEVVLAKP 359 (401)
Q Consensus 345 ~~i~g~~l~v~~a~~ 359 (401)
..|+|++|+|.||+.
T Consensus 152 ~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 152 QDLNGRPLRINWAAK 166 (166)
T ss_dssp CEETTEECEEEESCC
T ss_pred CccCCcEEEEEecCC
Confidence 999999999999973
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.8e-32 Score=239.87 Aligned_cols=179 Identities=23% Similarity=0.426 Sum_probs=151.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999998765
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
..... .. . .....
T Consensus 107 ~~~~~----------~~-----------------------------------------~---~~~~~------------- 119 (216)
T 2qfj_A 107 NIGQA----------QP-----------------------------------------I---IDQLA------------- 119 (216)
T ss_dssp CCGGG----------HH-----------------------------------------H---HHHHH-------------
T ss_pred Ccccc----------ch-----------------------------------------h---hhhhh-------------
Confidence 43210 00 0 00000
Q ss_pred eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 015763 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l 342 (401)
......++|||+|||..+++++|+++|++||.|..|+|+.+..+. +|||||+|.+.++|.+|+..|
T Consensus 120 ------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 120 ------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp ------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 001344799999999999999999999999999999999886443 899999999999999999999
Q ss_pred cCCeeCCeEEEEEeccCCCc
Q 015763 343 EKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 343 ~g~~i~g~~l~v~~a~~~~~ 362 (401)
||..|+|++|+|.||.++..
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSS
T ss_pred cCCEeCCcEEEEEEecCCCC
Confidence 99999999999999997633
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=8e-33 Score=232.23 Aligned_cols=163 Identities=27% Similarity=0.501 Sum_probs=149.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 4211
Q ss_pred eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCC-CC-CCeEEEEeCCHHHHHHHHHhh
Q 015763 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~-~~-kg~afV~f~~~~~A~~A~~~l 342 (401)
....++|+|+|||..+++++|+++|++||.|..|.|+++.. +. +|||||+|.+.++|.+|+..|
T Consensus 86 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 02236899999999999999999999999999999998874 33 899999999999999999999
Q ss_pred cCCeeCC--eEEEEEec
Q 015763 343 EKYEIDG--QVLEVVLA 357 (401)
Q Consensus 343 ~g~~i~g--~~l~v~~a 357 (401)
||..|.| ++|+|.||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 9999988 99999997
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2e-32 Score=229.50 Aligned_cols=162 Identities=27% Similarity=0.494 Sum_probs=147.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999998999999999999999999999999999999999999988754
Q ss_pred ccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeee
Q 015763 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (401)
Q Consensus 186 ~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~ 265 (401)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 211
Q ss_pred ecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhc
Q 015763 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~ 343 (401)
....++|+|+|||..+++++|+++|++||.|..|+++.+..++ +|||||+|.+.++|.+|+..||
T Consensus 85 -------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 85 -------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp -------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred -------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 0223689999999999999999999999999999998886433 8999999999999999999999
Q ss_pred CCeeCCeE--EEEEec
Q 015763 344 KYEIDGQV--LEVVLA 357 (401)
Q Consensus 344 g~~i~g~~--l~v~~a 357 (401)
|..|.|+. |+|.||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999965 999886
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.4e-32 Score=227.85 Aligned_cols=165 Identities=25% Similarity=0.492 Sum_probs=144.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCC--CceeEEEEEecCHHHHHHHHHHhcCCccC---CeEEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g--~~~g~a~V~f~~~~~a~~a~~~l~~~~~~---g~~l~ 179 (401)
+.++|||+|||+++|+++|+++|++||.|..|++++++.++ +++|||||+|.+.++|.+|+..|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998876 89999999999999999999999998765 45555
Q ss_pred EEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCC
Q 015763 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (401)
Q Consensus 180 v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 259 (401)
+.++.+...
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 555432111
Q ss_pred CCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHH
Q 015763 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (401)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A 338 (401)
.....++|||+|||..+++++|+++|++||.|..|.|+++..+. +|||||+|.+.++|.+|
T Consensus 91 ------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp ------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 00234689999999999999999999999999999999987766 99999999999999999
Q ss_pred HHhhcCCeeC---CeEEEEEecc
Q 015763 339 VKDTEKYEID---GQVLEVVLAK 358 (401)
Q Consensus 339 ~~~l~g~~i~---g~~l~v~~a~ 358 (401)
+..|||..+. |++|+|.||.
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhcCCcccCCCCCCeEEEecC
Confidence 9999998776 4999999983
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.4e-32 Score=230.57 Aligned_cols=163 Identities=24% Similarity=0.496 Sum_probs=145.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
+.++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999997 4567889988877654
Q ss_pred cccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCee
Q 015763 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (401)
Q Consensus 185 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v 264 (401)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 3110
Q ss_pred eecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhh
Q 015763 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l 342 (401)
....++|||+|||..+++++|+++|++||.|..|.|..++.++ +|||||+|.+.++|.+|+. +
T Consensus 84 --------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 84 --------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp --------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred --------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 0223689999999999999999999999999999999886433 8999999999999999998 8
Q ss_pred cCCeeCCeEEEEEeccCC
Q 015763 343 EKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 343 ~g~~i~g~~l~v~~a~~~ 360 (401)
++..|+|++|+|.||.++
T Consensus 149 ~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEECSSSSCEEEEECCCC
T ss_pred CCEEeCCeEEEEeecCCC
Confidence 999999999999999875
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.8e-30 Score=221.32 Aligned_cols=195 Identities=21% Similarity=0.287 Sum_probs=144.8
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLP-KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp-~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
.+++|||+||| +.+++++|+.+|++||.|.+|+++++ ++|||||+|.+.++|.+||+.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
..... .|..... + .-+. ... ++... ..... |.....+
T Consensus 78 ~~~~~-----~p~~~~~--~-----~~~~-~~~----~~~~~-~~~~r-----~~~~~~~-------------------- 114 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG--L-----EDGS-CSY----KDFSE-SRNNR-----FSTPEQA-------------------- 114 (205)
T ss_dssp SCSCC-----CCCSCCB--C-----TTSC-BSE----EECTT-CTTCS-----CSSHHHH--------------------
T ss_pred cCCcc-----CCCcccc--c-----ccCC-ccc----cccCC-Ccccc-----ccCcccc--------------------
Confidence 75432 1110000 0 0000 000 00000 00000 0000000
Q ss_pred eeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCe--eEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i--~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
. ......++++|||+|||..+++++|+++|++||.| ..|+|..+...++|||||+|.+.++|.+|+..
T Consensus 115 ----~------~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 115 ----A------KNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp ----T------TSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred ----c------ccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 0 00011446799999999999999999999999999 89999888754479999999999999999999
Q ss_pred hcCCeeCCe----EEEEEec
Q 015763 342 TEKYEIDGQ----VLEVVLA 357 (401)
Q Consensus 342 l~g~~i~g~----~l~v~~a 357 (401)
|||..|.|+ ++.|.||
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999987 5777765
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.1e-31 Score=225.15 Aligned_cols=166 Identities=21% Similarity=0.353 Sum_probs=142.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+++++++|+++|.+||.|.. .++.+..+|+++|||||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 4557889999999999999999999999997765 33445556889999999999999999999 599999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
++.+...
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8764311
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
......++|||+|||..+++++|+++|++||.|..+ ......+|||||+|.+.++|.+|+..
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 000234799999999999999999999999988777 22223389999999999999999999
Q ss_pred hcCCeeCCeEEEEEeccCC
Q 015763 342 TEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~ 360 (401)
|||..|+|++|+|.||.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999875
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.7e-30 Score=222.77 Aligned_cols=181 Identities=17% Similarity=0.340 Sum_probs=144.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc----C-------CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 173 (401)
..++|||+|||+++++++|+++|++| | .|..+.+ ++++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 56899999999999999999999999 4 5555555 556899999999999999999 8999999
Q ss_pred CCeEEEEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcC
Q 015763 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (401)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 253 (401)
.|+.|.|.++.......-. ....
T Consensus 76 ~g~~i~v~~~~~~~~~~~~---------------------------------~~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM---------------------------------SENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS---------------------------------SSCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCC---------------------------------cCCC------------------------
Confidence 9999999988654221000 0000
Q ss_pred CcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC-C-CCeEEEEeCC
Q 015763 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAE 331 (401)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~-~-kg~afV~f~~ 331 (401)
.... +. ..........++|||+|||..+++++|+++|++||.|..|.|..+..+ . +|||||+|.+
T Consensus 99 ~~~~-----------~~--~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 99 SVYV-----------PG--VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp SCCC-----------TT--SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred cCCC-----------CC--CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 0000 00 000111245689999999999999999999999999999999988643 3 8999999999
Q ss_pred HHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 332 ~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
.++|.+|+..|||..|+|+.|+|.||+++..
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999998654
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=8.3e-30 Score=232.18 Aligned_cols=248 Identities=17% Similarity=0.245 Sum_probs=152.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
....++|||+|||+++++++|+ .+|++||.|..|++.+ +++++|||||+|.+.++|.+|+..||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568899999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEE----eCCH-HHHHHHHHHHhcC
Q 015763 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL----YYNN-ACADYSRQKMLNA 253 (401)
Q Consensus 179 ~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~----f~~~-~~a~~a~~~l~~~ 253 (401)
+|.++............... .......-..... ...................+.+. -... ..+...+..+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFV-ERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCCcc-cchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99999765432221111110 0000000000000 00000000000000000000000 0000 0000000000000
Q ss_pred -Cccc-CCCC----C-eeeec---------CCCC--CCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEec
Q 015763 254 -NFKL-DGNT----P-TISWA---------DPKS--TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (401)
Q Consensus 254 -~~~~-~~~~----~-~v~~~---------~~~~--~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~ 315 (401)
.+.. .+.. . ..... .+.. .........+.++|||+|||..+++++|+++|++||.|..|+|.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000 0000 0 00000 0000 00001122456899999999999999999999999999999998
Q ss_pred CCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeC-CeEEEEEecc
Q 015763 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GQVLEVVLAK 358 (401)
Q Consensus 316 ~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~a~ 358 (401)
.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.||+
T Consensus 241 ~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 665 589999999999999999999999999 9999999997
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2e-30 Score=218.49 Aligned_cols=157 Identities=19% Similarity=0.411 Sum_probs=138.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc----C-------CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 173 (401)
+.++|||+|||+++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46889999999999999999999999 6 67777663 45899999999999999999 8999999
Q ss_pred CCeEEEEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcC
Q 015763 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (401)
Q Consensus 174 ~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 253 (401)
.|+.|.|.++..... .
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------~------------------------ 91 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------L------------------------ 91 (172)
T ss_dssp TTEECEEECCSSCCC----------------------------------------C------------------------
T ss_pred cCceeeecCCcccCC----------------------------------------C------------------------
Confidence 999999987643211 0
Q ss_pred CcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCC-CC-CCeEEEEeCC
Q 015763 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAE 331 (401)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~-~~-kg~afV~f~~ 331 (401)
...++|+|+|||..+++++|+++|++||.|..|.|+++.. +. +|||||+|.+
T Consensus 92 --------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 92 --------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp --------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred --------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 1136899999999999999999999999999999998864 33 8999999999
Q ss_pred HHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 332 RSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 332 ~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
.++|.+|+..|||..|+|++|+|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999984
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=2.3e-29 Score=221.88 Aligned_cols=195 Identities=24% Similarity=0.353 Sum_probs=148.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 103 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+..++|||+|||+ .+++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45688999999999 99999999999999999999998874 7899999999999999999999999999999999
Q ss_pred ecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCC
Q 015763 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (401)
Q Consensus 182 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 261 (401)
++....... +..... .....+ .|.. ... .
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~~~-----~~~~-------------~~~---~-- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGLTK-----DYGN-------------SPL---H-- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTTEE-----ECTT-------------CSS---C--
T ss_pred EecCccccC----cccccc------------------------cccccc-----cccc-------------Ccc---c--
Confidence 987543211 000000 000000 0000 000 0
Q ss_pred CeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHH
Q 015763 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (401)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~ 340 (401)
....+. .........+.++|||+|||..+++++|+++|++|| .|..|+|.+.. +|||||+|.+.++|.+|+.
T Consensus 135 ---~~~~~~-~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 135 ---RFKKPG-SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp ---CCCSTT-SGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHH
T ss_pred ---ccCCcc-ccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHH
Confidence 000000 000011124568999999999999999999999999 99999996532 5899999999999999999
Q ss_pred hhcCCeeC-CeEEEEEeccCC
Q 015763 341 DTEKYEID-GQVLEVVLAKPQ 360 (401)
Q Consensus 341 ~l~g~~i~-g~~l~v~~a~~~ 360 (401)
.|||..|. |++|+|.||+++
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSSC
T ss_pred HHCCCccCCCCeEEEEEecCC
Confidence 99999999 999999999874
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.1e-29 Score=219.13 Aligned_cols=193 Identities=23% Similarity=0.359 Sum_probs=148.2
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
.+++|||+|||+ .+++++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368899999999 99999999999999999999998764 789999999999999999999999999999999998
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
...... ++.... ......+.| .. ... .+
T Consensus 77 ~~~~~~----~~~~~~------------------------~~~~~~~~~-----~~-------------~~~---~r--- 104 (198)
T 1qm9_A 77 KHQNVQ----LPREGQ------------------------EDQGLTKDY-----GN-------------SPL---HR--- 104 (198)
T ss_dssp CCCSCC----CSSSSS------------------------SSSSCEEES-----SC-------------CCT---TS---
T ss_pred cCCCcC----CCCcCC------------------------ccccccccc-----cC-------------Cch---hh---
Confidence 765321 110000 000000000 00 000 00
Q ss_pred eeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 015763 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l 342 (401)
+..+. .........++++|+|+|||..+++++|+++|++|| .|..|+|.++. +|+|||+|.+.++|.+|+..|
T Consensus 105 --~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 105 --FKKPG-SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp --SSSCC-CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHH
T ss_pred --ccCcc-ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHh
Confidence 00000 000111124578999999999999999999999999 99999997643 589999999999999999999
Q ss_pred cCCeeC-CeEEEEEeccCC
Q 015763 343 EKYEID-GQVLEVVLAKPQ 360 (401)
Q Consensus 343 ~g~~i~-g~~l~v~~a~~~ 360 (401)
||..|+ |++|+|.|++++
T Consensus 179 ~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 179 HNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCCSSCCSCCEEEECCC
T ss_pred cCCccCCCCeEEEEeeccc
Confidence 999999 999999999864
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.1e-28 Score=221.77 Aligned_cols=158 Identities=28% Similarity=0.441 Sum_probs=142.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++|+++|+.+|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4567899999999999999999999999999999954 4789999999999999999999999999999999876
Q ss_pred ccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCe
Q 015763 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (401)
Q Consensus 184 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 263 (401)
.+
T Consensus 94 ~~------------------------------------------------------------------------------ 95 (261)
T 3sde_A 94 TH------------------------------------------------------------------------------ 95 (261)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 31
Q ss_pred eeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhh
Q 015763 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l 342 (401)
.++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|
T Consensus 96 ------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 ------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp ------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 2479999999999999999999999999999999887666 899999999999999999999
Q ss_pred c-CCeeC---CeEEEEEeccCCCcC
Q 015763 343 E-KYEID---GQVLEVVLAKPQTDK 363 (401)
Q Consensus 343 ~-g~~i~---g~~l~v~~a~~~~~~ 363 (401)
| +..+. +++|.|.++.+....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESS
T ss_pred cCCeEEecCCCceEEEeeccccCcc
Confidence 5 44444 999999999876543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1e-25 Score=205.26 Aligned_cols=164 Identities=20% Similarity=0.390 Sum_probs=151.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
+..++|||+|||+.+++++|+.+|++||.|..+.++.+..+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc---------cccccCCCCCCC-CHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcC
Q 015763 184 ETK---------NRLFIGNVPKNW-TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (401)
Q Consensus 184 ~~~---------~~l~v~~l~~~~-~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 253 (401)
.++ ++|||+|||..+ ++++|+++|+.||. |..+.++.++ .+.++|||||.|.+.++|..|+..|++.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 754 479999999996 99999999999998 9999999875 6888999999999999999999999775
Q ss_pred CcccCCCCCeeeecCCCCC
Q 015763 254 NFKLDGNTPTISWADPKST 272 (401)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~ 272 (401)
.+.|+.+.|.++.+...
T Consensus 250 --~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 250 --SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp --EETTEECEEEECCSSSC
T ss_pred --ccCCeEEEEEEecCCCc
Confidence 55899999999977654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=3.4e-25 Score=202.64 Aligned_cols=162 Identities=23% Similarity=0.387 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
...++|||+|||+.+++++|+++|++|| .|..|.++.+.. |.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3678999999999999999999999999 999999998876 88999999999999999999999999999999999998
Q ss_pred cccc-------------cccccCCCCCC-CCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHH
Q 015763 183 SETK-------------NRLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (401)
Q Consensus 183 ~~~~-------------~~l~v~~l~~~-~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~ 248 (401)
+.+. ++|||+|||.. +++++|+++|++||. |..+.++.++..++.++|||||.|.+.+.|..|+
T Consensus 194 a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 194 SNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp CCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred CCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 7643 57999999999 999999999999998 9999998875435889999999999999999999
Q ss_pred HHhcCCcccCCCCCeeeecCCC
Q 015763 249 KMLNANFKLDGNTPTISWADPK 270 (401)
Q Consensus 249 ~l~~~~~~~~~~~~~v~~~~~~ 270 (401)
.|++. .+.|+.+.|.++.+.
T Consensus 272 ~l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GGTTE--EETTEEEEEEECCCC
T ss_pred HhcCC--EECCcEEEEEEecCC
Confidence 88764 578999999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=5.6e-22 Score=164.15 Aligned_cols=136 Identities=21% Similarity=0.343 Sum_probs=109.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhcC-----CcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHH
Q 015763 228 RNRGFSFVLYYNNACADYSRQKMLNA-----NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKEL 302 (401)
Q Consensus 228 ~~~g~~~v~f~~~~~a~~a~~~l~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~ 302 (401)
.++||+||.|.+...|.+|+..+++. .....+.......................++|||+|||..+++++|+.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 58999999999999999999887642 2223333344333333333333333356789999999999999999999
Q ss_pred HhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcC
Q 015763 303 FQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 303 f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||+++...
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999986433 999999999999999999999999999999999999986544
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=4.3e-21 Score=157.26 Aligned_cols=139 Identities=16% Similarity=0.218 Sum_probs=112.5
Q ss_pred CCceeEEEEEecCHHHHHHHHHHh-cCCccCCeEEEEEecccccccccCCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC
Q 015763 145 GESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (401)
Q Consensus 145 g~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~~v~~~~~~~~~ 223 (401)
.+.+|+++|+|.+.+.|.+|+..+ |+..+.| .+.+.++...........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~----------------------------- 59 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH----------------------------- 59 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS-----------------------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc-----------------------------
Confidence 467999999999999999999999 9999999 999988754321100000
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHH
Q 015763 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303 (401)
Q Consensus 224 ~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f 303 (401)
..............++|||+|||..+++++|+.+|
T Consensus 60 ---------------------------------------------~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 94 (150)
T 2i2y_A 60 ---------------------------------------------HHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAF 94 (150)
T ss_dssp ---------------------------------------------SCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHH
T ss_pred ---------------------------------------------cccccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 00000001112456899999999999999999999
Q ss_pred hhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 304 QRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 304 ~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
++||.|..|+|+++ .+|||||+|.+.++|.+|+..|||..|.|++|+|.||+++.
T Consensus 95 ~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 95 GYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999987 36899999999999999999999999999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.8e-21 Score=151.69 Aligned_cols=97 Identities=23% Similarity=0.440 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+++|++||.|..|+++++. +.++|||||+|.+.++|.+||..|++..|.|+.|+|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346789999999999999999999999999999999885 558999999999999999999999999999999999997
Q ss_pred ccc--------------cccccCCCCCCCCHHH
Q 015763 184 ETK--------------NRLFIGNVPKNWTEDE 202 (401)
Q Consensus 184 ~~~--------------~~l~v~~l~~~~~~~~ 202 (401)
.++ ++|||+|||+.+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 653 3699999999988763
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=144.99 Aligned_cols=84 Identities=32% Similarity=0.595 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
....+++|||+|||+++|+++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 15 ~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 15 LYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp -CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 015763 182 LSET 185 (401)
Q Consensus 182 ~~~~ 185 (401)
+++|
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9976
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=141.70 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=74.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..+++|||+|||..+|+++|+++|++||.|..|+|++++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999887644 899999999999999999999999999999999999
Q ss_pred cC
Q 015763 358 KP 359 (401)
Q Consensus 358 ~~ 359 (401)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 86
No 26
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=2.4e-20 Score=153.82 Aligned_cols=86 Identities=26% Similarity=0.416 Sum_probs=78.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999887644 899999999999999999999999999999999999
Q ss_pred cCCCcCCC
Q 015763 358 KPQTDKKT 365 (401)
Q Consensus 358 ~~~~~~~~ 365 (401)
++......
T Consensus 117 ~~~~~~~~ 124 (156)
T 1h2v_Z 117 AGFKEGRQ 124 (156)
T ss_dssp SCCCTTCC
T ss_pred CCCCCcCC
Confidence 98655433
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=6.3e-20 Score=136.47 Aligned_cols=81 Identities=20% Similarity=0.422 Sum_probs=73.5
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhh-cCCeeCCeEEEEEec
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLA 357 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G-~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~a 357 (401)
+++|||+|||+.+|+++|+++|++|| .|.+|+|++++.++ +|||||+|.+.++|.+|+..| ++..|+|++|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999987654 999999999999999999987 467899999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87644
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=138.40 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
++..++|||+|||+++++++|+++|++||.|..|.++.++.|++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8654
No 29
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-19 Score=134.98 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=79.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+.+|||||+|.+.++|.+|+..||+..|.|++|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 55689999999999999999999999999999999998777799999999999999999999999999999999999998
Q ss_pred CCcCC
Q 015763 360 QTDKK 364 (401)
Q Consensus 360 ~~~~~ 364 (401)
+..++
T Consensus 93 ~~~~~ 97 (103)
T 2cqi_A 93 PSSQK 97 (103)
T ss_dssp TTCCC
T ss_pred Ccccc
Confidence 65543
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-20 Score=137.71 Aligned_cols=83 Identities=35% Similarity=0.570 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHh-cCCccCCeEEEEEec
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLS 183 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~ 183 (401)
+.+|||+|||+++|+++|+++|++|| .|..|++++++.+|+++|||||+|.+.++|.+||+.+ ++..+.|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999877 456799999999999
Q ss_pred ccccc
Q 015763 184 ETKNR 188 (401)
Q Consensus 184 ~~~~~ 188 (401)
.++.+
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 31
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=6e-20 Score=175.45 Aligned_cols=84 Identities=25% Similarity=0.415 Sum_probs=77.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||+.+|+++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+||..|||..|.|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999886443 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.+....
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 976543
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=1.1e-18 Score=136.16 Aligned_cols=86 Identities=16% Similarity=0.300 Sum_probs=78.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 556899999999999999999999999999999999886433 899999999999999999999999999999999999
Q ss_pred cCCCcCCC
Q 015763 358 KPQTDKKT 365 (401)
Q Consensus 358 ~~~~~~~~ 365 (401)
+++.....
T Consensus 93 ~~~~~~~~ 100 (115)
T 2dgo_A 93 TRKPPAPK 100 (115)
T ss_dssp SCCCCCSC
T ss_pred cCCCCCCc
Confidence 98766543
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9e-19 Score=132.72 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=77.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999999987433 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987554
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=141.68 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=77.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999888744 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.....+
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 865443
No 35
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.7e-19 Score=132.46 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=77.0
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~----~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
...++|||+|||..+++++|+ .+|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456899999999999999999 99999999999999998877 8999999999999999999999999999999999
Q ss_pred eccCCCc
Q 015763 356 LAKPQTD 362 (401)
Q Consensus 356 ~a~~~~~ 362 (401)
+|++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9987643
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=135.45 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCC--eeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc----cCCeEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE----LKGKTI 178 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~--i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~----~~g~~l 178 (401)
.-.||||+|||+.+|+++|+++|++||. |..|++++++.||+++|||||+|.+.++|.+|++.||+.. +.||.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4468999999999999999999999994 6799999999999999999999999999999999999974 899999
Q ss_pred EEEeccc
Q 015763 179 RCSLSET 185 (401)
Q Consensus 179 ~v~~~~~ 185 (401)
.|.+|++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 37
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=132.58 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=78.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+++|++||.|..|.|..+..+.+|||||+|.+.++|.+|+..||+..|.|++|+|.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 55689999999999999999999999999999999998776799999999999999999999999999999999999998
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cq3_A 93 RVMT 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7554
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=2.1e-19 Score=140.02 Aligned_cols=82 Identities=15% Similarity=0.389 Sum_probs=76.1
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
..+|||+|||+.+++++|+++|++||.|.+|+|+++..+++|||||+|.+.++|.+|+..|||..|.|++|+|.++.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 46899999999999999999999999999999999877669999999999999999999999999999999999998765
Q ss_pred cC
Q 015763 362 DK 363 (401)
Q Consensus 362 ~~ 363 (401)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 39
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-18 Score=134.95 Aligned_cols=83 Identities=25% Similarity=0.490 Sum_probs=76.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|++ .|.|++|+|.||
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 556899999999999999999999999999999999987543 89999999999999999999998 899999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.+....
T Consensus 94 ~~~~~~ 99 (116)
T 2cqd_A 94 YLGAKP 99 (116)
T ss_dssp TTTCCC
T ss_pred ccCCCc
Confidence 876443
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=131.77 Aligned_cols=83 Identities=20% Similarity=0.467 Sum_probs=76.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|..++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999999887543 899999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87644
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=133.85 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=72.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCC--eeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCC----eeCCeEE
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKY----EIDGQVL 352 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~--i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~----~i~g~~l 352 (401)
.-+||||+|||+.+|+++|+++|++||. |.+|+|++++.++ ||||||+|.+.++|.+|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3479999999999999999999999995 6799999987654 999999999999999999999996 5999999
Q ss_pred EEEeccC
Q 015763 353 EVVLAKP 359 (401)
Q Consensus 353 ~v~~a~~ 359 (401)
.|.||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999985
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-18 Score=134.30 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=77.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 456899999999999999999999999999999999888766 8999999999999999999999999999999999998
Q ss_pred CCCcC
Q 015763 359 PQTDK 363 (401)
Q Consensus 359 ~~~~~ 363 (401)
....+
T Consensus 93 ~~~~~ 97 (114)
T 2do0_A 93 RALPK 97 (114)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 75544
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.9e-19 Score=133.24 Aligned_cols=85 Identities=24% Similarity=0.464 Sum_probs=78.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 567899999999999999999999999999999999886543 899999999999999999999999999999999999
Q ss_pred cCCCcCC
Q 015763 358 KPQTDKK 364 (401)
Q Consensus 358 ~~~~~~~ 364 (401)
+++..+.
T Consensus 90 ~~~~~~~ 96 (102)
T 2cqb_A 90 KPMRIKE 96 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9875543
No 44
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=135.23 Aligned_cols=84 Identities=24% Similarity=0.476 Sum_probs=77.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+++|++||.|..|.|..+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 445899999999999999999999999999999999988555 8999999999999999999999999999999999999
Q ss_pred CCCcC
Q 015763 359 PQTDK 363 (401)
Q Consensus 359 ~~~~~ 363 (401)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76544
No 45
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.3e-18 Score=127.25 Aligned_cols=80 Identities=28% Similarity=0.552 Sum_probs=77.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (401)
++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999865
No 46
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=5.3e-19 Score=137.92 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=95.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+.+++++|+.+|++||.|..|.++.+ +.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999875 55699999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHhhCC
Q 015763 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212 (401)
Q Consensus 183 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 212 (401)
+.+.... .+++...+++++.++|+++|-
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9876543 778888899999999999984
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=132.30 Aligned_cols=84 Identities=23% Similarity=0.383 Sum_probs=77.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 556899999999999999999999999999999999987543 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++...
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 987554
No 48
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=1.7e-19 Score=157.69 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=73.4
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcC--CeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G--~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
..++|||+|||+.+++++|+++|++|| .|..|+|+.++.+. ||||||+|.+.++|.+||..||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 347899999999999999999999999 99999999986544 89999999999999999999999999999999999
Q ss_pred ccCC
Q 015763 357 AKPQ 360 (401)
Q Consensus 357 a~~~ 360 (401)
|++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9753
No 49
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=128.81 Aligned_cols=83 Identities=31% Similarity=0.525 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35788999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 50
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=130.88 Aligned_cols=83 Identities=34% Similarity=0.554 Sum_probs=76.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. ||+..|.|++|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 556899999999999999999999999999999999886544 8999999999999999999 9999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 987554
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1e-18 Score=128.45 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=78.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+++++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45788999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 015763 183 SE 184 (401)
Q Consensus 183 ~~ 184 (401)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=132.39 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=77.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 566899999999999999999999999999999999886544 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 986543
No 53
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=3.7e-18 Score=130.22 Aligned_cols=80 Identities=31% Similarity=0.675 Sum_probs=73.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||+..|.|+.|+|.|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4568999999999999999999999999999999973 5999999999999999999999999999999999998
Q ss_pred CCcCCC
Q 015763 360 QTDKKT 365 (401)
Q Consensus 360 ~~~~~~ 365 (401)
+.....
T Consensus 83 ~~~~~~ 88 (103)
T 2dgu_A 83 PDQKRK 88 (103)
T ss_dssp CCCCCC
T ss_pred Ccccch
Confidence 766543
No 54
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=130.92 Aligned_cols=84 Identities=13% Similarity=0.243 Sum_probs=76.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEE-EecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v-~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
.+.++|||+|||..+++++|+.+|++||.|..| +|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 999885443 89999999999999999999999999999999999
Q ss_pred ccCCCcC
Q 015763 357 AKPQTDK 363 (401)
Q Consensus 357 a~~~~~~ 363 (401)
|.++..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9886543
No 55
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=130.23 Aligned_cols=85 Identities=32% Similarity=0.643 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+.+++++|+++|++||.|..|.+++++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98654
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=130.72 Aligned_cols=83 Identities=19% Similarity=0.474 Sum_probs=77.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+.+|++||.|..|+|..+..+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 456899999999999999999999999999999999988555 8999999999999999999999999999999999999
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7644
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=131.93 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=77.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999999887644 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
++....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 976544
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.9e-18 Score=131.02 Aligned_cols=82 Identities=22% Similarity=0.455 Sum_probs=74.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+++|++||.|..|.|..+.. .+|||||+|.+.++|.+|+..||+..|.|+.|+|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 5568999999999999999999999999999999976542 489999999999999999999999999999999999987
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 59
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.4e-18 Score=137.85 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=77.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 456899999999999999999999999999999999886443 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 60
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=5.7e-19 Score=141.41 Aligned_cols=123 Identities=20% Similarity=0.327 Sum_probs=79.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCCcccccccceEEEccCCCCCCHHHHHHHHhhcCCeeE
Q 015763 232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK 311 (401)
Q Consensus 232 ~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~ 311 (401)
+.|+.|.+...+..|+..+.+......+ ...+..+ .......++|||+|||..+++++|+++|++||.|..
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~---~~~~~~~------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~ 76 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG---SMSYGRP------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 76 (135)
T ss_dssp --------------------------------CCSCCS------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSE
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC---CCCcCCC------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE
Confidence 5677778888888888887765432211 1112222 222355689999999999999999999999999999
Q ss_pred EEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCcC
Q 015763 312 VVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (401)
Q Consensus 312 v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (401)
|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++++...
T Consensus 77 v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 77 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999886543 899999999999999999999999999999999999976443
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.3e-18 Score=134.21 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=78.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999887443 899999999999999999999999999999999999
Q ss_pred cCCCcCC
Q 015763 358 KPQTDKK 364 (401)
Q Consensus 358 ~~~~~~~ 364 (401)
+++....
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpz_A 103 RSKNDSK 109 (115)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 9876543
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=131.97 Aligned_cols=84 Identities=29% Similarity=0.501 Sum_probs=77.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+ .+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 46789999999999999999999999999999999988 444 8999999999999999999999999999999999999
Q ss_pred CCCcCC
Q 015763 359 PQTDKK 364 (401)
Q Consensus 359 ~~~~~~ 364 (401)
++..+.
T Consensus 92 ~~~~~~ 97 (103)
T 2d9p_A 92 RKEERQ 97 (103)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 63
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=131.60 Aligned_cols=84 Identities=25% Similarity=0.519 Sum_probs=77.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 556899999999999999999999999999999999886543 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++...
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987554
No 64
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=132.99 Aligned_cols=85 Identities=32% Similarity=0.612 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+.+++++|+.+|++||.|..|.+++++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 015763 182 LSETK 186 (401)
Q Consensus 182 ~~~~~ 186 (401)
++.++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98765
No 65
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=4.6e-19 Score=131.71 Aligned_cols=81 Identities=31% Similarity=0.556 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccC--CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
.+|||+|||+++++++|+++|++|| .|..++++.++.+|+++|||||+|.+.++|.+|++.||+..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 015763 185 TKN 187 (401)
Q Consensus 185 ~~~ 187 (401)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 66
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=137.77 Aligned_cols=84 Identities=25% Similarity=0.487 Sum_probs=77.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 556899999999999999999999999999999999887654 899999999999999999999999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 986544
No 67
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=128.46 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=71.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCe--eCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~v~~a 357 (401)
.++++|||+|||..+++++|+.+|++||.|.+|+|++. ||||||+|.+.++|..|+..|++.. |.|++|+|.||
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 56789999999999999999999999999999999864 4899999999999999999999875 78999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8763
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=2.2e-18 Score=126.66 Aligned_cols=79 Identities=23% Similarity=0.469 Sum_probs=74.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999998885554 899999999999999999999999999999999998
Q ss_pred c
Q 015763 358 K 358 (401)
Q Consensus 358 ~ 358 (401)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 69
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=127.85 Aligned_cols=81 Identities=14% Similarity=0.282 Sum_probs=73.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 456899999999999999999999999999999999886443 899999999999999999999999999999999999
Q ss_pred cCC
Q 015763 358 KPQ 360 (401)
Q Consensus 358 ~~~ 360 (401)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=129.74 Aligned_cols=83 Identities=33% Similarity=0.482 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 015763 183 SET 185 (401)
Q Consensus 183 ~~~ 185 (401)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 71
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=1e-18 Score=131.53 Aligned_cols=84 Identities=32% Similarity=0.678 Sum_probs=80.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccc
Q 015763 186 KNRL 189 (401)
Q Consensus 186 ~~~l 189 (401)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7653
No 72
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=131.67 Aligned_cols=85 Identities=29% Similarity=0.514 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98754
No 73
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=130.75 Aligned_cols=86 Identities=30% Similarity=0.444 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccccc
Q 015763 183 SETKNR 188 (401)
Q Consensus 183 ~~~~~~ 188 (401)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 74
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=130.54 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=74.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc--CCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|..|+..|+ +..|.|++|+|.||
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45689999999999999999999999999999999986 4899999999999999999886 47899999999999
Q ss_pred cCCCcCCC
Q 015763 358 KPQTDKKT 365 (401)
Q Consensus 358 ~~~~~~~~ 365 (401)
+++.....
T Consensus 90 ~~~~~~~~ 97 (105)
T 1sjq_A 90 NHKELKTD 97 (105)
T ss_dssp SSSSCCCT
T ss_pred CCCCCCcc
Confidence 98755543
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=3.4e-18 Score=128.66 Aligned_cols=82 Identities=20% Similarity=0.374 Sum_probs=76.4
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
+++|||+|||..+++++|+.+|++||.|..|.|..++.++ +|||||+|.+.++|.+|+..|||..|+|+.|+|.||++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999887543 89999999999999999999999999999999999998
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7554
No 76
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.2e-18 Score=130.95 Aligned_cols=84 Identities=19% Similarity=0.389 Sum_probs=77.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhc------CCeeCCeE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE------KYEIDGQV 351 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~------g~~i~g~~ 351 (401)
.+.++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|| +..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 556899999999999999999999999999999999887644 8999999999999999999999 99999999
Q ss_pred EEEEeccCCCcC
Q 015763 352 LEVVLAKPQTDK 363 (401)
Q Consensus 352 l~v~~a~~~~~~ 363 (401)
|+|.|+.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999987554
No 77
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.9e-18 Score=131.38 Aligned_cols=85 Identities=19% Similarity=0.338 Sum_probs=78.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCC---eEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG---QVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~ 355 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 456899999999999999999999999999999999988655 8999999999999999999999999998 999999
Q ss_pred eccCCCcCC
Q 015763 356 LAKPQTDKK 364 (401)
Q Consensus 356 ~a~~~~~~~ 364 (401)
||.++..+.
T Consensus 93 ~a~~~~~~~ 101 (105)
T 2dnh_A 93 FADTDKESG 101 (105)
T ss_dssp ESCSSCCCS
T ss_pred ECccCcccC
Confidence 999876553
No 78
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=129.76 Aligned_cols=85 Identities=32% Similarity=0.478 Sum_probs=79.9
Q ss_pred cCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeE--------EEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 015763 100 LALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (401)
Q Consensus 100 ~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~ 171 (401)
...+...++|||+|||+++++++|+.+|++||.|.. |+++.++.+|+++|||||+|.+.++|.+|++.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccCCeEEEEEecc
Q 015763 172 ELKGKTIRCSLSE 184 (401)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (401)
.+.|+.|+|.+++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 79
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=129.36 Aligned_cols=83 Identities=34% Similarity=0.594 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.++..++|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 015763 182 LSE 184 (401)
Q Consensus 182 ~~~ 184 (401)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 80
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-18 Score=129.57 Aligned_cols=86 Identities=26% Similarity=0.611 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+.+++++|+.+|.+||.|..|.++.++.+++++|||||+|.+.++|.+||. |++..|.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred ecccccc
Q 015763 182 LSETKNR 188 (401)
Q Consensus 182 ~~~~~~~ 188 (401)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987543
No 81
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=129.44 Aligned_cols=84 Identities=26% Similarity=0.596 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+.+|.+||.|..|.++.++ +|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467889999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98653
No 82
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.7e-18 Score=130.23 Aligned_cols=84 Identities=27% Similarity=0.497 Sum_probs=76.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCC-CC-CC-CCeEEEEeCCHHHHHHHHHhh-cCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KS-GK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~-~~-~~-kg~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~ 355 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+ .. +. +|||||+|.+.++|.+|+..| |+..|.|++|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 56689999999999999999999999999999999988 33 33 899999999999999999999 9999999999999
Q ss_pred eccCCCcC
Q 015763 356 LAKPQTDK 363 (401)
Q Consensus 356 ~a~~~~~~ 363 (401)
||+++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99986543
No 83
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=129.30 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=75.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC--C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~--~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
.+.++|||+|||..+++++|+.+|++|| |..|.|+.++.+ . +|||||+|.+.++|.+|+ .||+..|.|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4568999999999999999999999999 999999998763 3 899999999999999999 8999999999999999
Q ss_pred ccCCCcC
Q 015763 357 AKPQTDK 363 (401)
Q Consensus 357 a~~~~~~ 363 (401)
|.++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9986544
No 84
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=2.9e-18 Score=125.38 Aligned_cols=78 Identities=17% Similarity=0.302 Sum_probs=73.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
.+|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999885544 899999999999999999999999999999999999875
No 85
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.1e-18 Score=130.39 Aligned_cols=84 Identities=30% Similarity=0.515 Sum_probs=76.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCC--C--C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--G--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~--~--~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|..+.. + . +|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999988765 2 2 899999999999999999999999999999999
Q ss_pred EeccCCCcC
Q 015763 355 VLAKPQTDK 363 (401)
Q Consensus 355 ~~a~~~~~~ 363 (401)
.|++++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999886544
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=4e-18 Score=131.75 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=77.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 556899999999999999999999999999999999886544 899999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 88654
No 87
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=3.5e-19 Score=135.04 Aligned_cols=83 Identities=25% Similarity=0.365 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCC------CCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC-eE
Q 015763 105 NGSEVFIGGLPK------DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KT 177 (401)
Q Consensus 105 ~~~~v~v~nlp~------~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g-~~ 177 (401)
..++|||+|||+ ++++++|+++|++||.|..|++++++.||+++|||||+|.+.++|.+||+.||+..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEeccccc
Q 015763 178 IRCSLSETKN 187 (401)
Q Consensus 178 l~v~~~~~~~ 187 (401)
|+|.++.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999987643
No 88
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=132.10 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+++++++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.+..
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998653
No 89
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=128.08 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=75.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 567899999999999999999999999999999999887644 899999999999999999999999999999999999
Q ss_pred cC
Q 015763 358 KP 359 (401)
Q Consensus 358 ~~ 359 (401)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 90
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=131.64 Aligned_cols=87 Identities=32% Similarity=0.492 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecccccc
Q 015763 182 LSETKNR 188 (401)
Q Consensus 182 ~~~~~~~ 188 (401)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987643
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=127.22 Aligned_cols=79 Identities=22% Similarity=0.446 Sum_probs=74.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 556899999999999999999999999999999999987643 899999999999999999999999999999999998
Q ss_pred c
Q 015763 358 K 358 (401)
Q Consensus 358 ~ 358 (401)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=3.3e-18 Score=133.31 Aligned_cols=85 Identities=31% Similarity=0.555 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+||..||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45688999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 184 ETKNR 188 (401)
Q Consensus 184 ~~~~~ 188 (401)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87543
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.3e-18 Score=126.88 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=73.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh--cCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT--EKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~v~~a 357 (401)
.++++|||+|||..+++++|+.+|++||.|..|.|+++ ||||||+|.+.++|.+|+..| ++..|.|++|+|.||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 56689999999999999999999999999999999876 589999999999999999987 468899999999999
Q ss_pred cCCCcCC
Q 015763 358 KPQTDKK 364 (401)
Q Consensus 358 ~~~~~~~ 364 (401)
+++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 9876654
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=131.30 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 764
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=4.6e-18 Score=132.53 Aligned_cols=86 Identities=34% Similarity=0.565 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+.+|.+||.|..|.+++++.+++++|||||+|.+.++|.+||..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccccc
Q 015763 183 SETKNR 188 (401)
Q Consensus 183 ~~~~~~ 188 (401)
+.++..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 987543
No 96
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.5e-18 Score=131.03 Aligned_cols=86 Identities=30% Similarity=0.593 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987654
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6e-18 Score=128.45 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=73.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcC--CeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+.+|++||.|..|.|+++ ||||||+|.+.++|.+|+..|++ ..|.|++|+|.||
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 55689999999999999999999999999999999875 48999999999999999998875 4599999999999
Q ss_pred cCCCcCC
Q 015763 358 KPQTDKK 364 (401)
Q Consensus 358 ~~~~~~~ 364 (401)
+.+...+
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 9876553
No 98
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=130.26 Aligned_cols=84 Identities=30% Similarity=0.546 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEE-EEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
...++|||+|||+.+++++|+.+|++||.|..| ++++++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97654
No 99
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=132.57 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=76.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|..+..+.+|||||+|.+.++|.+|+..|||..|+|++|+|.||++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 56789999999999999999999999999999999988766699999999999999999999999999999999999987
Q ss_pred C
Q 015763 360 Q 360 (401)
Q Consensus 360 ~ 360 (401)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 100
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=131.29 Aligned_cols=84 Identities=12% Similarity=0.320 Sum_probs=77.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhh-cCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCe-eCCeEEEEEe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~-~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~-i~g~~l~v~~ 356 (401)
.+.++|||+|||..+++++|+.+|++ ||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+.. |.|++|+|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45689999999999999999999999 9999999999988555 8999999999999999999999999 9999999999
Q ss_pred ccCCCcC
Q 015763 357 AKPQTDK 363 (401)
Q Consensus 357 a~~~~~~ 363 (401)
+.++...
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9876554
No 101
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=5.9e-18 Score=129.91 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=77.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCee---CCeEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEI---DGQVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~v 354 (401)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 456899999999999999999999999999999999987643 89999999999999999999999998 8999999
Q ss_pred EeccCCCcC
Q 015763 355 VLAKPQTDK 363 (401)
Q Consensus 355 ~~a~~~~~~ 363 (401)
.||.++..+
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999986554
No 102
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=131.86 Aligned_cols=86 Identities=30% Similarity=0.494 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhc------CCccCC
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH------SKELKG 175 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~------~~~~~g 175 (401)
.+...++|||+|||+++++++|+.+|.+||.|..|.++.++.+++++|||||+|.+.++|.+||..|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEEeccccc
Q 015763 176 KTIRCSLSETKN 187 (401)
Q Consensus 176 ~~l~v~~~~~~~ 187 (401)
+.|+|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998654
No 103
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=131.19 Aligned_cols=85 Identities=32% Similarity=0.576 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.+..
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 104
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=7.5e-18 Score=128.54 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=75.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+.+|++|| |..|.|+.++.+. +|||||+|.+.++|.+|+ .||+..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 5568999999999999999999999997 9999999887644 899999999999999999 89999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 976543
No 105
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=129.50 Aligned_cols=85 Identities=27% Similarity=0.472 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCC---CCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
...++|||+|||+++++++|+++|++||.|..|.++.++. +++++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678899999999999999999999999999999998876 6699999999999999999999999999999999999
Q ss_pred Eecccccc
Q 015763 181 SLSETKNR 188 (401)
Q Consensus 181 ~~~~~~~~ 188 (401)
.++.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987543
No 106
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.3e-18 Score=130.63 Aligned_cols=84 Identities=21% Similarity=0.349 Sum_probs=76.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCee--------EEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~--------~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
...++|||+|||..+++++|+++|++||.|. .|+|..++.+. +|||||+|.+.++|.+|+..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4568999999999999999999999999999 69999885543 8999999999999999999999999999
Q ss_pred eEEEEEeccCCCcC
Q 015763 350 QVLEVVLAKPQTDK 363 (401)
Q Consensus 350 ~~l~v~~a~~~~~~ 363 (401)
++|+|.|++++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999986543
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=2.8e-18 Score=142.67 Aligned_cols=85 Identities=21% Similarity=0.345 Sum_probs=75.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..|||..|.|++|+|.||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999886544 899999999999999999999999999999999999
Q ss_pred cCCCcCC
Q 015763 358 KPQTDKK 364 (401)
Q Consensus 358 ~~~~~~~ 364 (401)
.++..+.
T Consensus 150 ~~~~~~~ 156 (165)
T 1rk8_A 150 FVKGPKR 156 (165)
T ss_dssp EECC---
T ss_pred cCCCCCC
Confidence 8875543
No 108
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=125.51 Aligned_cols=78 Identities=23% Similarity=0.575 Sum_probs=72.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 556899999999999999999999999999999997 47999999999999999999999999999999999998
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 80 ~~~~ 83 (90)
T 2dnq_A 80 KSKA 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 109
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=126.00 Aligned_cols=81 Identities=19% Similarity=0.371 Sum_probs=75.0
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC---CCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG---KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..++|||+|||..+++++|+.+|++||.|..|.|+.+..+ .+|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3579999999999999999999999999999999888753 3899999999999999999999999999999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 110
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=128.05 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=75.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 456899999999999999999999999999999999888766 8999999999999999999999999999999999997
Q ss_pred C
Q 015763 359 P 359 (401)
Q Consensus 359 ~ 359 (401)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=2.9e-18 Score=128.05 Aligned_cols=83 Identities=16% Similarity=0.319 Sum_probs=75.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+++|++||.|..|.|.++....+|||||+|.+.++|.+|+..||+..|.|++|+|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45689999999999999999999999999999999885433389999999999999999999999999999999999987
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 112
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=128.23 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=72.5
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcC--CeeCCeEEEEEe
Q 015763 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~-~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~ 356 (401)
.+.++|||+|||. .+++++|+.+|++||.|.+|+|++++ |||||+|.+.++|..|+..||+ ..|.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 4568999999999 99999999999999999999998764 7999999999999999999986 459999999999
Q ss_pred ccCCCcC
Q 015763 357 AKPQTDK 363 (401)
Q Consensus 357 a~~~~~~ 363 (401)
|+.....
T Consensus 89 a~~~~~~ 95 (102)
T 1x4d_A 89 SQKYKRI 95 (102)
T ss_dssp ECCCTTS
T ss_pred CCCCCCC
Confidence 9976443
No 113
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=7.1e-18 Score=124.47 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=75.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+++++++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999994 58888999999998
Q ss_pred ec
Q 015763 182 LS 183 (401)
Q Consensus 182 ~~ 183 (401)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 114
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=2.5e-17 Score=130.17 Aligned_cols=86 Identities=28% Similarity=0.425 Sum_probs=78.7
Q ss_pred cccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 278 ~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
.....++|||+|||..+++++|+.+|++||.|..|.|..+..+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 33667899999999999999999999999999999999988554 89999999999999999999999999999999999
Q ss_pred ccCCCcC
Q 015763 357 AKPQTDK 363 (401)
Q Consensus 357 a~~~~~~ 363 (401)
|......
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876443
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-17 Score=127.57 Aligned_cols=79 Identities=14% Similarity=0.282 Sum_probs=73.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCC-----eEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g-----~~l~v 354 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.| +.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 45689999999999999999999999999999999887 799999999999999999999999999 99999
Q ss_pred EeccCCCcC
Q 015763 355 VLAKPQTDK 363 (401)
Q Consensus 355 ~~a~~~~~~ 363 (401)
.+|.++...
T Consensus 88 ~~a~~~~~~ 96 (108)
T 1x4c_A 88 KVDGPRSPS 96 (108)
T ss_dssp EESSCCSCC
T ss_pred EeCCCCCCC
Confidence 999986443
No 116
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=130.22 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=76.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|..++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456899999999999999999999999999999999887644 899999999999999999999999999999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8763
No 117
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.3e-18 Score=128.06 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|++||.|..|.++.+ +++++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46788999999999999999999999999999999988 7999999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8754
No 118
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=129.86 Aligned_cols=86 Identities=30% Similarity=0.558 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeC-CCCCCceeEEEEEecCHHHHHHHHHHh-cCCccCCeEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~g~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~g~~l~v 180 (401)
....++|||+|||+.+++++|+.+|.+||.|..|.++++ +.+++++|||||+|.+.++|.+||..| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346788999999999999999999999999999999998 788999999999999999999999999 999999999999
Q ss_pred Eecccccc
Q 015763 181 SLSETKNR 188 (401)
Q Consensus 181 ~~~~~~~~ 188 (401)
.++.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987654
No 119
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=5.6e-18 Score=125.61 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999999989999999999999999999999 9999999999999999876
Q ss_pred c
Q 015763 186 K 186 (401)
Q Consensus 186 ~ 186 (401)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 120
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=6.5e-18 Score=140.42 Aligned_cols=86 Identities=24% Similarity=0.433 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+.+++++|+.+|.+||.|..|.++.++.+|.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.++.
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 987643
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=4.4e-18 Score=135.02 Aligned_cols=87 Identities=34% Similarity=0.489 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
..+...++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+||..|++..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeccccc
Q 015763 181 SLSETKN 187 (401)
Q Consensus 181 ~~~~~~~ 187 (401)
.++.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987653
No 122
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=126.71 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+++|++||.|..|.++.++. ++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34668899999999999999999999999999999999886 99999999999999999999999999999999999999
Q ss_pred ccc
Q 015763 183 SET 185 (401)
Q Consensus 183 ~~~ 185 (401)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 123
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=128.83 Aligned_cols=83 Identities=14% Similarity=0.253 Sum_probs=76.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCee-EEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeE----E
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQV----L 352 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~-~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~----l 352 (401)
...++|||+|||..+++++|+++|++||.|. .|.|++++.+. +|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 5678999999999999999999999999999 99999887544 899999999999999999999999999999 9
Q ss_pred EEEeccCCCc
Q 015763 353 EVVLAKPQTD 362 (401)
Q Consensus 353 ~v~~a~~~~~ 362 (401)
+|.||++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987643
No 124
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.2e-17 Score=127.88 Aligned_cols=83 Identities=33% Similarity=0.517 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC---eEEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG---KTIRC 180 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g---~~l~v 180 (401)
...++|||+|||+.+++++|+.+|++||.|..|.++.++ +++++|||||+|.+.++|.+||..||+..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 69999999999999999999999999999998 99999
Q ss_pred Eeccccc
Q 015763 181 SLSETKN 187 (401)
Q Consensus 181 ~~~~~~~ 187 (401)
.++.+..
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9998654
No 125
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=5.8e-18 Score=130.84 Aligned_cols=83 Identities=25% Similarity=0.454 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 764
No 126
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.2e-18 Score=120.89 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=70.1
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.+.-|+|+||++.+|+++|+++|.+||+|..++|... ||||||+|.+.++|.+|++.||+..|.||+|+|.+|+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN----QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 3468999999999999999999999999999999774 59999999999999999999999999999999999963
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=8.9e-18 Score=127.67 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=73.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
++|||+|||..+++++|+++|++||.|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|.|+.|+|.|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 48999999999999999999999999999999888 568999999999999999999999999999999999998764
Q ss_pred C
Q 015763 363 K 363 (401)
Q Consensus 363 ~ 363 (401)
.
T Consensus 78 ~ 78 (101)
T 2hvz_A 78 R 78 (101)
T ss_dssp S
T ss_pred c
Confidence 4
No 128
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.5e-18 Score=129.79 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++|+++|+.+|++||.|..|.+++++. |+++|||||+|.+.++|.+||. +++..+.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3567899999999999999999999999999999999987 9999999999999999999997 8999999999999987
Q ss_pred cc
Q 015763 184 ET 185 (401)
Q Consensus 184 ~~ 185 (401)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=126.91 Aligned_cols=82 Identities=28% Similarity=0.556 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+++++++|+.+|++||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cc
Q 015763 183 SE 184 (401)
Q Consensus 183 ~~ 184 (401)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 130
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=5.2e-18 Score=130.18 Aligned_cols=86 Identities=30% Similarity=0.603 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc---CCeEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIR 179 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~---~g~~l~ 179 (401)
+...++|||+|||+.+++++|+.+|++||.|..|+++.++.+++++|||||+|.+.++|.+|+..||+..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34678899999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EEecccccc
Q 015763 180 CSLSETKNR 188 (401)
Q Consensus 180 v~~~~~~~~ 188 (401)
|.++.+...
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987543
No 131
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=1.8e-18 Score=131.09 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=75.7
Q ss_pred ccceEEEccCCC------CCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCC-eE
Q 015763 281 QVKALYVKNIPD------NTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG-QV 351 (401)
Q Consensus 281 ~~~~l~v~nlp~------~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g-~~ 351 (401)
..++|||+|||. .+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 99999999999999999999999988744 9999999999999999999999999999 99
Q ss_pred EEEEeccCCC
Q 015763 352 LEVVLAKPQT 361 (401)
Q Consensus 352 l~v~~a~~~~ 361 (401)
|+|.+|.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998753
No 132
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=7.1e-18 Score=129.61 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=76.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999886544 899999999999999999999999999999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8763
No 133
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=128.32 Aligned_cols=85 Identities=19% Similarity=0.417 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCee-EEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeE----
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF-EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT---- 177 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~---- 177 (401)
....++|||+|||+++++++|+.+|++||.|. .|++++++.+++++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEeccccc
Q 015763 178 IRCSLSETKN 187 (401)
Q Consensus 178 l~v~~~~~~~ 187 (401)
|+|.++.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987643
No 134
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=126.09 Aligned_cols=80 Identities=25% Similarity=0.523 Sum_probs=71.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+++|++||.| +|+.+..+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999977 566665444 8999999999999999999999999999999999999
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8744
No 135
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.2e-17 Score=128.34 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
......++|||+|||+.+++++|+++|.+||.|..|.++.+. +|+++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344578899999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred Eecc
Q 015763 181 SLSE 184 (401)
Q Consensus 181 ~~~~ 184 (401)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 136
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=130.64 Aligned_cols=85 Identities=29% Similarity=0.493 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCee--------EEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g 175 (401)
...++|||+|||+.+++++|+++|.+||.|. .|+++.++.+++++|||||+|.+.++|.+||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999998 69999998899999999999999999999999999999999
Q ss_pred eEEEEEecccccc
Q 015763 176 KTIRCSLSETKNR 188 (401)
Q Consensus 176 ~~l~v~~~~~~~~ 188 (401)
+.|+|.++.++..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999987543
No 137
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=131.58 Aligned_cols=83 Identities=11% Similarity=0.319 Sum_probs=76.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+ .||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 456899999999999999999999999999999999888643 899999999999999999 89999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 886554
No 138
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=127.63 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+.+|.+|| |..|.++.++.+++++|||||+|.+.++|.+|| .|++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4578999999999999999999999997 999999999999999999999999999999999 89999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.+..
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 139
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=122.65 Aligned_cols=78 Identities=21% Similarity=0.410 Sum_probs=72.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|.+ +||||+|.+.++|.+|+..||+..|.|+.|+|.|+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 5568999999999999999999999999999999974 4999999999999999999999999999999999987
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6443
No 140
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=130.50 Aligned_cols=84 Identities=32% Similarity=0.601 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+++++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 97654
No 141
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=129.17 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=74.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc--CCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~a 357 (401)
.++++|||+|||+.+++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.||
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 55689999999999999999999999999999999876 4899999999999999999987 47899999999999
Q ss_pred cCCCcCCC
Q 015763 358 KPQTDKKT 365 (401)
Q Consensus 358 ~~~~~~~~ 365 (401)
+++..+..
T Consensus 105 ~~k~~~~~ 112 (119)
T 2ad9_A 105 NHKELKTD 112 (119)
T ss_dssp SSSSCCCC
T ss_pred cCCCCCcc
Confidence 98766543
No 142
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=124.69 Aligned_cols=82 Identities=20% Similarity=0.438 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCC-ceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~-~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..++|||+|||+++++++|+.+|++||.|..|.++.+..++. ++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568899999999999999999999999999999999887766 8999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 143
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=2e-17 Score=127.81 Aligned_cols=96 Identities=17% Similarity=0.348 Sum_probs=78.9
Q ss_pred CCCCCeeeecCCCCCCCCcccccccceEEEccCCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHH
Q 015763 258 DGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (401)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~ 336 (401)
.+..+.+..+.+..... .....++|||+|||.. +++++|+.+|++||.|..|.| .+|||||+|.+.++|.
T Consensus 6 ~g~~~~~~~s~~~~~~~---~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND---PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSCC---CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCCC---CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHH
Confidence 34555555444332221 2244589999999999 999999999999999999999 3589999999999999
Q ss_pred HHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 337 KAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 337 ~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
+|+..||+..|.|++|+|.|++++..
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999986544
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=137.91 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC--CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
..++|||+|||+++++++|+.+|++|| .|..|+++.++.+|+++|||||+|.+.++|.+||..|++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 145
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=3.1e-18 Score=149.71 Aligned_cols=82 Identities=29% Similarity=0.546 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccC--CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
..++|||+|||+++|+++|+++|++|| .|..|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 677899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 146
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=129.32 Aligned_cols=82 Identities=21% Similarity=0.388 Sum_probs=75.5
Q ss_pred cccceEEEccCCCCCCHHHHH---HHHhhcCCeeEEEecCCCCC-----CCCeEEEEeCCHHHHHHHHHhhcCCeeCCeE
Q 015763 280 SQVKALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKSG-----KRDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~---~~f~~~G~i~~v~i~~~~~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (401)
...++|||+|||..+++++|+ ++|++||.|..|.|+++..+ .+|||||+|.+.++|.+|+..|||..|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 446799999999999999999 99999999999999988753 2689999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 015763 352 LEVVLAKPQT 361 (401)
Q Consensus 352 l~v~~a~~~~ 361 (401)
|+|.||.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999999764
No 147
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=129.10 Aligned_cols=83 Identities=23% Similarity=0.453 Sum_probs=76.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+.. ++..|.|++|+|.||
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 456899999999999999999999999999999999986544 89999999999999999997 999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 987543
No 148
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=127.27 Aligned_cols=80 Identities=18% Similarity=0.413 Sum_probs=74.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|..+ +|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 44689999999999999999999999999999999887 48999999999999999999999999999999999998
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6544
No 149
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.3e-17 Score=123.62 Aligned_cols=79 Identities=18% Similarity=0.430 Sum_probs=73.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
..++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+ .|||..|.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35799999999999999999999999999999999886433 899999999999999999 899999999999999998
Q ss_pred CC
Q 015763 359 PQ 360 (401)
Q Consensus 359 ~~ 360 (401)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 150
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.3e-17 Score=128.24 Aligned_cols=80 Identities=26% Similarity=0.415 Sum_probs=75.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 556899999999999999999999999999999999888655 8999999999999999999999999999999999986
Q ss_pred C
Q 015763 359 P 359 (401)
Q Consensus 359 ~ 359 (401)
.
T Consensus 107 s 107 (107)
T 3ulh_A 107 S 107 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 151
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=6.9e-18 Score=133.88 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=76.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 556899999999999999999999999999999999887643 899999999999999999999999999999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 152
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=1.5e-17 Score=124.10 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+++++++|+.+|++||.|..|.+.++ +++++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999874 689999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.+..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87654
No 153
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9.3e-18 Score=128.31 Aligned_cols=85 Identities=25% Similarity=0.358 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcc-cCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc-cCCeEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIR 179 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~-~~g~~l~ 179 (401)
.+...++|||+|||+++++++|+.+|.+ ||.|..|.++.++ +|+++|||||+|.+.++|.+|+..|++.. +.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EEeccccc
Q 015763 180 CSLSETKN 187 (401)
Q Consensus 180 v~~~~~~~ 187 (401)
|.++.++.
T Consensus 84 v~~a~~~~ 91 (104)
T 2dhg_A 84 LSVAIPKA 91 (104)
T ss_dssp CCBCCCCC
T ss_pred EEEccCCC
Confidence 99987653
No 154
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=126.81 Aligned_cols=79 Identities=16% Similarity=0.333 Sum_probs=73.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeE--------EEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~--------v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
.+.++|||+|||..+++++|+++|++||.|.. |+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 56789999999999999999999999999999 9999886543 8999999999999999999999999999
Q ss_pred eEEEEEecc
Q 015763 350 QVLEVVLAK 358 (401)
Q Consensus 350 ~~l~v~~a~ 358 (401)
++|+|.||+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 155
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.7e-18 Score=128.60 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=73.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||+.+|+++|+.+|++||.|..|+|+++..+. +|||||+|.+.++|.+|+. +++..|+|+.|+|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 345899999999999999999999999999999999988755 9999999999999999999 89999999999999987
Q ss_pred C
Q 015763 359 P 359 (401)
Q Consensus 359 ~ 359 (401)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 6
No 156
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=132.83 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=76.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCe-eEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i-~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||+.+++++|+++|++||.| ..|+|+.++.+. +|||||+|.+.++|.+||.. |+..|.|+.|+|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 899999888655 99999999999999999997 999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++..+
T Consensus 92 ~~~~~~ 97 (114)
T 2cpy_A 92 TLEDMR 97 (114)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 887543
No 157
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=2e-18 Score=128.27 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=68.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcC--CeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G--~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
.+|||+|||..+++++|+++|++|| .|..|+|+.++.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999886544 8999999999999999999999999999999999999
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 158
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=7.1e-18 Score=132.10 Aligned_cols=82 Identities=30% Similarity=0.545 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+++++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999998
Q ss_pred cc
Q 015763 183 SE 184 (401)
Q Consensus 183 ~~ 184 (401)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-17 Score=122.54 Aligned_cols=77 Identities=40% Similarity=0.618 Sum_probs=71.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhc--CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~--G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+.+|++| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 556899999999999999999999999 999999885 479999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97654
No 160
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=128.56 Aligned_cols=83 Identities=31% Similarity=0.670 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+.+++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 185 TKN 187 (401)
Q Consensus 185 ~~~ 187 (401)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 161
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=5.3e-18 Score=127.38 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45889999999999999999999999999989999988899999999999999999999999999999999999999875
Q ss_pred c
Q 015763 185 T 185 (401)
Q Consensus 185 ~ 185 (401)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 162
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=123.71 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=73.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeC--CeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..||+..|. |++|+|.||
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 45689999999999999999999999999999999876 589999999999999999999999999 999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
+++.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9763
No 163
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=127.69 Aligned_cols=83 Identities=20% Similarity=0.430 Sum_probs=76.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+.. |+..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 556899999999999999999999999999999999986544 89999999999999999998 999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 977544
No 164
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=127.34 Aligned_cols=82 Identities=24% Similarity=0.488 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCC-CCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
...++|||+|||+.+++++|+.+|.+|| |..|.++.++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999988 999999999999999999999 9999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98654
No 165
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.7e-18 Score=121.65 Aligned_cols=75 Identities=32% Similarity=0.675 Sum_probs=71.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
+|||+|||+++++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|++ |++..+.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 49999999999999999999999999999999999899999999999999999999996 8999999999999875
No 166
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=121.59 Aligned_cols=77 Identities=21% Similarity=0.455 Sum_probs=71.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|.+ +||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 5568999999999999999999999999999999984 4899999999999999999999999999999999998
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
...
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 167
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.9e-18 Score=126.25 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCeEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (401)
.+...++|||+|||+.+|+++|+++|++||.|..|+++++ ||||||+|.+.++|.+|+..|++ ..|.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4567899999999999999999999999999999999864 78999999999999999998864 689999999
Q ss_pred EEeccccc
Q 015763 180 CSLSETKN 187 (401)
Q Consensus 180 v~~~~~~~ 187 (401)
|.++.++.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99997653
No 168
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=2.5e-17 Score=122.72 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc--cCCeEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~--~~g~~l~v 180 (401)
.+++++|||+|||+.+|+++|+++|++||.|.+|++++ .||||||+|.+.++|.+|+..|++.. +.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34678999999999999999999999999999999975 37899999999999999999999876 78999999
Q ss_pred Eecccc
Q 015763 181 SLSETK 186 (401)
Q Consensus 181 ~~~~~~ 186 (401)
.+++++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 169
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=129.94 Aligned_cols=82 Identities=26% Similarity=0.560 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+++|.+||.|..|++++++.+++++|||||+|.+.++|.+||..+++ .|.|+.|+|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4678999999999999999999999999999999999999999999999999999999999999998 899999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.+.
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 754
No 170
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.3e-17 Score=132.16 Aligned_cols=85 Identities=25% Similarity=0.485 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+|+++|+.+|.+||.|..|.++.++.++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 87643
No 171
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=2e-17 Score=126.89 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=71.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||+.+++++|+++|++|| .|..|.|.... .+|||||+|.+.++|.+|+..|||..|.|+.|+|.+++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3457999999999999999999999999 89999996532 47999999999999999999999999999999999997
Q ss_pred CC
Q 015763 359 PQ 360 (401)
Q Consensus 359 ~~ 360 (401)
.+
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 172
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=127.19 Aligned_cols=84 Identities=29% Similarity=0.457 Sum_probs=76.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (401)
++|||+|||+++++++|+.+|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 57999999999999999999999999999999876 6899999999999999999999999999999999998753
Q ss_pred ----------------cccccCCCC
Q 015763 187 ----------------NRLFIGNVP 195 (401)
Q Consensus 187 ----------------~~l~v~~l~ 195 (401)
.++||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 357777775
No 173
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=128.31 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=74.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
....+|||+|||+.+++++|+++|++| .|..|+|+.++.++ +|||||+|.+.++|.+|+ .||+..|+||.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345799999999999999999999999 89999999988766 999999999999999999 589999999999999997
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
+...
T Consensus 92 ~~~~ 95 (109)
T 2dnn_A 92 ERQW 95 (109)
T ss_dssp HHHH
T ss_pred ccch
Confidence 6543
No 174
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=124.54 Aligned_cols=79 Identities=27% Similarity=0.489 Sum_probs=73.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.+.++|||+|||..+++++|+.+|++||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 55689999999999999999999999999999999866 48999999999999999999999999999999999998
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 175
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=8.5e-18 Score=128.74 Aligned_cols=84 Identities=26% Similarity=0.524 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+.+++++|+.+|.+||.|..|.++.++.+++++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 88654
No 176
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.4e-18 Score=127.05 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|.+||.|..+.++.++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35678999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 177
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=122.23 Aligned_cols=81 Identities=20% Similarity=0.435 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+++++++|+++|++| .|..|+++++ .+|+++|||||+|.+.++|.+||. |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 779999999999999999999998 999999999999999
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
+.+.
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8764
No 178
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=1.4e-17 Score=128.25 Aligned_cols=86 Identities=30% Similarity=0.518 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
..+...++|||+|||+++++++|+.+|++||.|..|++++++.+|+++|||||+|.+.++|.+||..+ +..+.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34457789999999999999999999999999999999999999999999999999999999999775 58899999999
Q ss_pred Eeccccc
Q 015763 181 SLSETKN 187 (401)
Q Consensus 181 ~~~~~~~ 187 (401)
.++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9987653
No 179
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=124.14 Aligned_cols=83 Identities=23% Similarity=0.489 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+++++++|+++|.+||.|..|.++.+.. .++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999998864 3899999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 98754
No 180
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=133.21 Aligned_cols=85 Identities=27% Similarity=0.489 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+++++++|+.+|+.||.|..|.++.++.+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 181
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-18 Score=122.42 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=73.1
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
++|||+|||+++++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+..++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999988 9999999999886
No 182
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-18 Score=132.33 Aligned_cols=85 Identities=25% Similarity=0.516 Sum_probs=77.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|..++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 345899999999999999999999999999999999886544 899999999999999999999999999999999999
Q ss_pred cCCCcCC
Q 015763 358 KPQTDKK 364 (401)
Q Consensus 358 ~~~~~~~ 364 (401)
.+...+.
T Consensus 86 ~~~~~~~ 92 (104)
T 1p1t_A 86 ASEKNKE 92 (104)
T ss_dssp TCTTHHH
T ss_pred CCccchh
Confidence 9876543
No 183
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.2e-17 Score=129.33 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=73.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 556899999999999999999999999999999999886543 899999999999999999999999999999999998
Q ss_pred c
Q 015763 358 K 358 (401)
Q Consensus 358 ~ 358 (401)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 5
No 184
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=126.18 Aligned_cols=81 Identities=25% Similarity=0.449 Sum_probs=72.9
Q ss_pred cccceEEEccCCCCC------CHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCe-EE
Q 015763 280 SQVKALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VL 352 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~------t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~-~l 352 (401)
...++|||+|||..+ ++++|+.+|++||.|..|.|++.....+|||||+|.+.++|.+|+..|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 345899999999999 78999999999999999999853333389999999999999999999999999999 99
Q ss_pred EEEeccCC
Q 015763 353 EVVLAKPQ 360 (401)
Q Consensus 353 ~v~~a~~~ 360 (401)
+|.+|...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99999864
No 185
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=124.52 Aligned_cols=83 Identities=18% Similarity=0.405 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+.+|++||.|..|.+++++. .++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999854 3689999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.+..
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98653
No 186
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=132.84 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=75.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeE--EEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCC----eeCCeE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--VVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKY----EIDGQV 351 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~--v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~----~i~g~~ 351 (401)
...++|||+|||+.+++++|+++|++||.|.. |+|++++.+. +|||||+|.+. +|.+|+..|||. .|.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999976 9999998544 99999999999 999999999999 999999
Q ss_pred EEEEeccCCCcC
Q 015763 352 LEVVLAKPQTDK 363 (401)
Q Consensus 352 l~v~~a~~~~~~ 363 (401)
|+|.||+++.+.
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999886543
No 187
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=7.6e-18 Score=127.68 Aligned_cols=83 Identities=23% Similarity=0.467 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCC-CCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
.....++|||+|||+++++++|+.+|++|| |..|+++.++ .+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 344678999999999999999999999999 9999999998 58999999999999999999999 89999999999999
Q ss_pred Eecccc
Q 015763 181 SLSETK 186 (401)
Q Consensus 181 ~~~~~~ 186 (401)
.++.++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 188
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=125.08 Aligned_cols=79 Identities=24% Similarity=0.328 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCC--ccCCeEEEEE
Q 015763 105 NGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (401)
Q Consensus 105 ~~~~v~v~nlp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 181 (401)
..++|||+|||+ .+|+++|+.+|++||.|..|.++++ +|||||+|.+.++|.+|+..|++. .|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 678999999999 9999999999999999999999864 579999999999999999999865 4999999999
Q ss_pred eccccccc
Q 015763 182 LSETKNRL 189 (401)
Q Consensus 182 ~~~~~~~l 189 (401)
++....++
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x4d_A 88 LSQKYKRI 95 (102)
T ss_dssp EECCCTTS
T ss_pred ECCCCCCC
Confidence 99876654
No 189
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.72 E-value=4e-17 Score=125.64 Aligned_cols=83 Identities=22% Similarity=0.444 Sum_probs=73.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|+|+.+..+. +|||||+|.+.++|.+|+..+ +..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 456899999999999999999999999999999999987543 899999999999999999976 59999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 976543
No 190
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=4e-17 Score=134.44 Aligned_cols=86 Identities=23% Similarity=0.377 Sum_probs=80.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+++++|||||+|.+.++|.+||..|++..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.+..
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997643
No 191
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=4.6e-17 Score=122.48 Aligned_cols=76 Identities=21% Similarity=0.392 Sum_probs=71.4
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~-~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
+..++|||+|||. .+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 5678999999998 99999999999999999999994 5899999999999999999999999999999999998
Q ss_pred CCC
Q 015763 359 PQT 361 (401)
Q Consensus 359 ~~~ 361 (401)
++.
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 192
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.7e-17 Score=118.90 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
-+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|..|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 466799999999999999999999999999999965 59999999999999999999999999999999999873
No 193
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.5e-17 Score=125.11 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=75.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCC-eeEEEec-CCCCCC--CCeEEEEeCCHHHHHHHHHhhc--CCeeCCeEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMP-PGKSGK--RDFGFIHYAERSSALKAVKDTE--KYEIDGQVLE 353 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~-i~~v~i~-~~~~~~--kg~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~ 353 (401)
...++|||+|||..+++++|+++|++||. |..|.|+ .+..+. +|||||+|.+.++|.+|+..|| +..|.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 565532 8999999999999999999996 5999999999
Q ss_pred EEeccCCCcC
Q 015763 354 VVLAKPQTDK 363 (401)
Q Consensus 354 v~~a~~~~~~ 363 (401)
|.||+++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999986553
No 194
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=126.22 Aligned_cols=82 Identities=24% Similarity=0.391 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+++|.+||.|..|.++.++ +++++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457889999999999999999999999999999999987 4999999999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 643
No 195
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=123.52 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
...++|||+|||+.+++++|+ .+|++||.|..|+++.++.+ +|||||+|.+.++|.+|+..||+..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467789999999999999999 99999999999999988765 88999999999999999999999999999999
Q ss_pred EEeccccc
Q 015763 180 CSLSETKN 187 (401)
Q Consensus 180 v~~~~~~~ 187 (401)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997654
No 196
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=126.10 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+++|+++|+++|++||. ..|+|+.++ +++++|||||+|.+.++|.+|| .+|+..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 499999998 7999999999999999999999 579999999999998
Q ss_pred ecccc
Q 015763 182 LSETK 186 (401)
Q Consensus 182 ~~~~~ 186 (401)
++.+.
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 87653
No 197
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-17 Score=122.63 Aligned_cols=82 Identities=24% Similarity=0.448 Sum_probs=74.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. ++..|+|++|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 456899999999999999999999999999999999887543 8999999999999999999 578999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 986543
No 198
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=4.7e-17 Score=128.56 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+.+|++||.|..|.++.+. +|+++|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccc
Q 015763 183 SETKNR 188 (401)
Q Consensus 183 ~~~~~~ 188 (401)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 976543
No 199
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=121.48 Aligned_cols=79 Identities=14% Similarity=0.312 Sum_probs=74.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+++|++| .|..|+|+.+..+. +|||||+|.+.++|.+|+. ||+..|.|+.|+|.+|+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456899999999999999999999999 99999999986655 9999999999999999999 99999999999999998
Q ss_pred CC
Q 015763 359 PQ 360 (401)
Q Consensus 359 ~~ 360 (401)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 76
No 200
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=123.48 Aligned_cols=83 Identities=31% Similarity=0.589 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|.+||.|..|.++.++.+++++|||||+|.+.++|.+||. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 467889999999999999999999999999999999999999999999999999999999997 577899999999999
Q ss_pred ccccc
Q 015763 184 ETKNR 188 (401)
Q Consensus 184 ~~~~~ 188 (401)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87543
No 201
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=9e-18 Score=127.28 Aligned_cols=79 Identities=22% Similarity=0.435 Sum_probs=71.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCC--CCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~--~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
...++|||+|||..+++++|+++|++|| |..|+|..++ .+. +|||||+|.+.++|.+|+ .|||..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5568999999999999999999999999 9999999986 333 899999999999999999 8999999999999999
Q ss_pred ccCC
Q 015763 357 AKPQ 360 (401)
Q Consensus 357 a~~~ 360 (401)
|+++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9875
No 202
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.5e-17 Score=125.09 Aligned_cols=78 Identities=21% Similarity=0.369 Sum_probs=71.5
Q ss_pred cccceEEEccCCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~-~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
.+.++|||+|||. .+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 5678999999998 99999999999999999999994 4899999999999999999999999999999999998
Q ss_pred CCCcC
Q 015763 359 PQTDK 363 (401)
Q Consensus 359 ~~~~~ 363 (401)
++...
T Consensus 82 ~~~~~ 86 (96)
T 2kvi_A 82 SNARP 86 (96)
T ss_dssp CCCC-
T ss_pred cCCCC
Confidence 76443
No 203
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=123.46 Aligned_cols=79 Identities=20% Similarity=0.469 Sum_probs=70.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCC-eeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcC-CeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~-i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||. |..+.+. .+|||||+|.+.++|.+|+..||| ..|.|++|+|.||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 45689999999999999999999999999 6666662 258999999999999999999999 9999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++..+
T Consensus 81 ~~~~~~ 86 (93)
T 2cqh_A 81 VSKKLR 86 (93)
T ss_dssp CCCCCC
T ss_pred cCcccc
Confidence 976443
No 204
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=128.83 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=72.9
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~----~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
.+.++|||+|||+.+++++|+ .+|++||.|..|.+... ...+|||||+|.+.++|..|+..|||..|.|++|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 456899999999999999876 69999999999998653 2238999999999999999999999999999999999
Q ss_pred eccCCCc
Q 015763 356 LAKPQTD 362 (401)
Q Consensus 356 ~a~~~~~ 362 (401)
||+.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987654
No 205
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=129.56 Aligned_cols=81 Identities=31% Similarity=0.453 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++++++|+.+|.+||.|..|.++.++.+++++|||||+|.+.++|.+|| .||+..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3478999999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred cc
Q 015763 185 TK 186 (401)
Q Consensus 185 ~~ 186 (401)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 206
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=4.6e-17 Score=120.08 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=71.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. +++..|+|++|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 556899999999999999999999999999999999887544 8999999999999999997 5888999999999986
No 207
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=124.86 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.+..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98654
No 208
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=133.16 Aligned_cols=83 Identities=22% Similarity=0.409 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeE--EEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCC----ccCCeEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~--~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~----~~~g~~l 178 (401)
..++|||+|||+++|+++|+++|.+||.|.. |++++++.+|+++|||||+|.+. +|.+|+..||+. .+.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5678999999999999999999999999976 99999999999999999999999 999999999999 9999999
Q ss_pred EEEecccccc
Q 015763 179 RCSLSETKNR 188 (401)
Q Consensus 179 ~v~~~~~~~~ 188 (401)
.|.++.+.++
T Consensus 101 ~V~~a~~~~~ 110 (131)
T 2m2b_A 101 NVEFAKGSKR 110 (131)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987644
No 209
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.6e-17 Score=132.33 Aligned_cols=82 Identities=24% Similarity=0.278 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCC---eeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
.+...++|||+|||+++|+++|+++|++||. |..|+++.++. |+++|||||+|.+.++|.+||+ |++..|.||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999998 89999999987 9999999999999999999998 99999999999
Q ss_pred EEEeccc
Q 015763 179 RCSLSET 185 (401)
Q Consensus 179 ~v~~~~~ 185 (401)
.|.++.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999864
No 210
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=119.53 Aligned_cols=75 Identities=23% Similarity=0.469 Sum_probs=70.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh-cCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+++|++||.|..|.|.++ +|||||+|.+.++|.+|+..| ++..|.|++|+|.||+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 55689999999999999999999999999999999875 489999999999999999998 9999999999999985
No 211
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=125.15 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=72.6
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC-C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~-~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..+.++.+..+ . +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999987766655443 3 899999999999999999999999999999999999
Q ss_pred cCC
Q 015763 358 KPQ 360 (401)
Q Consensus 358 ~~~ 360 (401)
+.+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 854
No 212
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=8.3e-18 Score=131.42 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=75.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCC---eeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~---i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
...++|||+|||+.+++++|+++|++||. |..|+|+.++.+. +|||||+|.+.++|.+|+. ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45689999999999999999999999998 8999999888766 9999999999999999999 89999999999999
Q ss_pred eccCCC
Q 015763 356 LAKPQT 361 (401)
Q Consensus 356 ~a~~~~ 361 (401)
++....
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 213
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=125.77 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=72.2
Q ss_pred cccceEEEccCCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc--CCeeCCeEEEEEe
Q 015763 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~~-~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~ 356 (401)
.++++|||+|||.. +++++|+.+|++||.|.+|+|.+. ||||||+|.+.++|..|+..|+ +..|.|++|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 55789999999998 999999999999999999999764 5899999999999999999886 4669999999999
Q ss_pred ccCCCcC
Q 015763 357 AKPQTDK 363 (401)
Q Consensus 357 a~~~~~~ 363 (401)
|+.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9876554
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=1.7e-16 Score=131.01 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=107.2
Q ss_pred EEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe-------------------cccccccccCCCC
Q 015763 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL-------------------SETKNRLFIGNVP 195 (401)
Q Consensus 135 ~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~-------------------~~~~~~l~v~~l~ 195 (401)
++.++.+. .+++|||||+|.+.+.|.+|+..+++.......+.+.. ....++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 35566654 46899999999999999999988876433222222211 1234789999999
Q ss_pred CCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEeCCHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCC
Q 015763 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (401)
Q Consensus 196 ~~~~~~~l~~~f~~~g~~v~~~~~~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~ 273 (401)
..+++++|+++|++||. |..+.++.+ ..++.++|||||.|.+.+.|..|+..|++. .+.++.+.|.++.+....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence 99999999999999998 999999887 357889999999999999999999998764 578999999999876543
No 215
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.5e-17 Score=125.08 Aligned_cols=82 Identities=26% Similarity=0.566 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc--------CC
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--------KG 175 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~--------~g 175 (401)
...++|||+|||+.+++++|+.+|.+||.|..|.++.++ +++++|||||+|.+.++|.+|+..||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356889999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred eEEEEEecccc
Q 015763 176 KTIRCSLSETK 186 (401)
Q Consensus 176 ~~l~v~~~~~~ 186 (401)
+.|.|.++.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 78999888754
No 216
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.3e-17 Score=125.33 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=72.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|++. +|||||+|.+.++|.+|+..|||..|.|++|+|.||+.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 34579999999999999999999999999999999863 48999999999999999999999999999999999987
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 544
No 217
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.6e-17 Score=123.05 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=74.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~-v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||+.+++++|+++|++||.|.. |+|+.+..+. +|||||+|.+.++|.+|+.. |+..|+||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45689999999999999999999999999987 8898886655 99999999999999999997 999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
..+..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 86543
No 218
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=125.18 Aligned_cols=81 Identities=31% Similarity=0.383 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeE-EEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE-VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~-~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
...++|||+|||+++|+++|+++|.+||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. ++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 46788999999999999999999999999987 888888 7899999999999999999999976 99999999999998
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 219
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.9e-17 Score=126.21 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=72.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCe----eEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i----~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
.+.++|||+|||..+++++|+.+|++||.| ..+.+. ....+|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456899999999999999999999999998 555555 22237999999999999999999999999999999999
Q ss_pred eccCCCcC
Q 015763 356 LAKPQTDK 363 (401)
Q Consensus 356 ~a~~~~~~ 363 (401)
||+++..+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99987554
No 220
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.70 E-value=4.5e-18 Score=126.39 Aligned_cols=80 Identities=31% Similarity=0.654 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecccc
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 186 (401)
++|||+|||+++++++|+++|++||.|..|.+++++.+|+++|||||+|.+.+ |.+|+..||+..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999999999999999999999 99999999999999999999999765
Q ss_pred c
Q 015763 187 N 187 (401)
Q Consensus 187 ~ 187 (401)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 221
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=126.33 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCe-
Q 015763 104 PNGSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK- 176 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~- 176 (401)
...++|||+|||+.+ |+++|+.+|++||.|..|.++ +.+|+++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 357899999999999 789999999999999999988 46799999999999999999999999999999998
Q ss_pred EEEEEeccccc
Q 015763 177 TIRCSLSETKN 187 (401)
Q Consensus 177 ~l~v~~~~~~~ 187 (401)
.|+|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999987543
No 222
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.1e-17 Score=129.09 Aligned_cols=81 Identities=26% Similarity=0.309 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCC---eeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
....++|||+|||+++|+++|+++|++||. |..|+++.++. |+++|||||+|.+.++|.+||+ +++..|.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346788999999999999999999999998 89999999987 9999999999999999999997 999999999999
Q ss_pred EEeccc
Q 015763 180 CSLSET 185 (401)
Q Consensus 180 v~~~~~ 185 (401)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998854
No 223
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=4.8e-17 Score=124.89 Aligned_cols=77 Identities=26% Similarity=0.448 Sum_probs=72.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 556899999999999999999999999999999998 48999999999999999999999999999999999998
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 644
No 224
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=129.16 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCe-eEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
+...++|||+|||+++|+++|+++|.+||.| ..|+|+.++ +|+++|||||+|.+.++|.+||.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3467899999999999999999999999999 889999998 899999999999999999999966 9999999999999
Q ss_pred ecccc
Q 015763 182 LSETK 186 (401)
Q Consensus 182 ~~~~~ 186 (401)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 225
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=126.32 Aligned_cols=86 Identities=26% Similarity=0.440 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCC-eeEEEEe-eCCCCCCceeEEEEEecCHHHHHHHHHHhc--CCccCCeEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTI 178 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~-i~~~~~~-~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~--~~~~~g~~l 178 (401)
....++|||+|||+++++++|+.+|.+||. |..|.++ .+..+|+++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEEecccccc
Q 015763 179 RCSLSETKNR 188 (401)
Q Consensus 179 ~v~~~~~~~~ 188 (401)
+|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 226
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=126.31 Aligned_cols=84 Identities=21% Similarity=0.348 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHH---HhhcccCCeeEEEEeeCCCCC---CceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 105 NGSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKESG---ESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~~g---~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
..++|||+|||+.+++++|+ ++|.+||.|..|.+.++..++ +++|||||+|.+.++|.+||..||+..|.|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 56789999999999999999 999999999999999887644 566999999999999999999999999999999
Q ss_pred EEEecccccc
Q 015763 179 RCSLSETKNR 188 (401)
Q Consensus 179 ~v~~~~~~~~ 188 (401)
+|.++.++..
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999988764
No 227
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2e-17 Score=118.36 Aligned_cols=73 Identities=25% Similarity=0.456 Sum_probs=68.5
Q ss_pred eEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
+|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. ||+..|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999887533 8999999999999999998 8999999999999986
No 228
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=122.86 Aligned_cols=85 Identities=35% Similarity=0.561 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+.+|++||.|..|.+.++ +|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999754 78999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 015763 183 SETKNRLFIGN 193 (401)
Q Consensus 183 ~~~~~~l~v~~ 193 (401)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99888776654
No 229
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=124.27 Aligned_cols=79 Identities=15% Similarity=0.307 Sum_probs=72.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||+.+++++|+++|++||. ..|+|+.++.+. +|||||+|.+.++|.+||. +|+..|.||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45689999999999999999999999995 499999888666 9999999999999999995 79999999999999988
Q ss_pred CC
Q 015763 359 PQ 360 (401)
Q Consensus 359 ~~ 360 (401)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 230
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=133.82 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=74.2
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcC--CeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G--~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
..++|||+|||+.+++++|+.+|++|| .|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999886544 89999999999999999999999999999999999
Q ss_pred ccCCC
Q 015763 357 AKPQT 361 (401)
Q Consensus 357 a~~~~ 361 (401)
|.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 231
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=127.51 Aligned_cols=83 Identities=28% Similarity=0.506 Sum_probs=77.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++++++|+.+|.+||.|..|.++.++.+++++|||||+|.+.++|.+||.. ++..|.|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347899999999999999999999999999999999999999999999999999999999977 9999999999999998
Q ss_pred cccc
Q 015763 185 TKNR 188 (401)
Q Consensus 185 ~~~~ 188 (401)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7643
No 232
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=4.2e-17 Score=127.03 Aligned_cols=83 Identities=17% Similarity=0.360 Sum_probs=75.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.++++|||+|||..+++++|+.+|++||.|..|.|+.+..+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45689999999999999999999999999999999876433 89999999999999999999999999999999999987
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
....
T Consensus 85 ~~~~ 88 (115)
T 3lqv_A 85 NRAF 88 (115)
T ss_dssp HHHT
T ss_pred Chhh
Confidence 6543
No 233
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7e-18 Score=123.92 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=73.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456899999999999999999999999999999999886543 899999999999999999999999999999988776
Q ss_pred cC
Q 015763 358 KP 359 (401)
Q Consensus 358 ~~ 359 (401)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 234
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.3e-17 Score=125.30 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=70.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
+..++|||+|||..+++++|+++|++||.|..+.++.+..+. +|||||+|.+.++|.+|+..||+..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 445899999999999999999999999999877776655443 899999999999999999999999999999999998
Q ss_pred cC
Q 015763 358 KP 359 (401)
Q Consensus 358 ~~ 359 (401)
++
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 235
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=129.25 Aligned_cols=79 Identities=23% Similarity=0.466 Sum_probs=73.1
Q ss_pred ccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 279 ~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
....++|||+|||..+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3567899999999999999999999999999999999886543 89999999999999999999999999999999998
Q ss_pred c
Q 015763 357 A 357 (401)
Q Consensus 357 a 357 (401)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 236
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=122.50 Aligned_cols=80 Identities=28% Similarity=0.484 Sum_probs=70.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|+.|+ .|.++.+..+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 5678999999999999999999999874 55565554333 899999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 97644
No 237
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.3e-17 Score=133.44 Aligned_cols=84 Identities=29% Similarity=0.459 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+++|++||.|..|.++.++.+++++|||||+|.+.++|.+||..|++..|.|+.|+|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45788999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.+..
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=5.8e-17 Score=130.97 Aligned_cols=81 Identities=33% Similarity=0.604 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 015763 183 S 183 (401)
Q Consensus 183 ~ 183 (401)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 239
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=125.00 Aligned_cols=83 Identities=23% Similarity=0.481 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+++++++|+.+|++||.|..|.++.+. +.++|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34477899999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred ecccc
Q 015763 182 LSETK 186 (401)
Q Consensus 182 ~~~~~ 186 (401)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98764
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=5.3e-17 Score=128.29 Aligned_cols=82 Identities=22% Similarity=0.474 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4578999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred ccc
Q 015763 185 TKN 187 (401)
Q Consensus 185 ~~~ 187 (401)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 241
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1.2e-16 Score=129.64 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=71.8
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCC--eEEEEEecc
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAK 358 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~ 358 (401)
...+|||+||++.+++++|+++|++||.|.+|+|.... .+|||||+|.+.++|.+|+..|||..|.| ++|+|.||+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34678999999999999999999999999999996543 36899999999999999999999999965 999999999
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
++..
T Consensus 123 ~~~l 126 (164)
T 1sjr_A 123 LTSL 126 (164)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8753
No 242
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=120.85 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=67.8
Q ss_pred CCeEEEcCCCCCC------CHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCe-EE
Q 015763 106 GSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TI 178 (401)
Q Consensus 106 ~~~v~v~nlp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~-~l 178 (401)
+++|||+|||+.+ ++++|+.+|++||.|..|.+. +.+|+++|||||+|.+.++|.+|+..||+..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 779999999999999999987 45799999999999999999999999999999999 88
Q ss_pred EE
Q 015763 179 RC 180 (401)
Q Consensus 179 ~v 180 (401)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 243
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.69 E-value=7.5e-17 Score=127.40 Aligned_cols=81 Identities=19% Similarity=0.410 Sum_probs=73.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 346899999999999999999999999999999998875433 899999999999999999 79999999999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 244
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=4.9e-17 Score=122.58 Aligned_cols=81 Identities=22% Similarity=0.473 Sum_probs=73.7
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~----~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
.++++|||+|||..+++++|+ .+|++||.|..|.|.. .+. +|||||+|.+.++|.+|+..|||..|.|++|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 566899999999999999999 9999999999999974 222 799999999999999999999999999999999
Q ss_pred EeccCCCc
Q 015763 355 VLAKPQTD 362 (401)
Q Consensus 355 ~~a~~~~~ 362 (401)
.|++++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99998643
No 245
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=124.81 Aligned_cols=84 Identities=26% Similarity=0.429 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCeEEE
Q 015763 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~--~~~~g~~l~ 179 (401)
...+++|||+|||++ +++++|+.+|++||.|..|++++ ++|||||+|.+.++|.+|+..|++ ..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346889999999998 99999999999999999999964 478999999999999999998864 569999999
Q ss_pred EEecccccccccC
Q 015763 180 CSLSETKNRLFIG 192 (401)
Q Consensus 180 v~~~~~~~~l~v~ 192 (401)
|.++..+..+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887776544
No 246
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=119.94 Aligned_cols=72 Identities=26% Similarity=0.542 Sum_probs=65.8
Q ss_pred ceEEEccCCCCC------CHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCe-EEEE
Q 015763 283 KALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEV 354 (401)
Q Consensus 283 ~~l~v~nlp~~~------t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v 354 (401)
++|||+|||..+ ++++|+.+|++||.|..|.|++.....+|||||+|.+.++|.+|+..|||..|.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 77999999999999999999854433489999999999999999999999999999 8876
No 247
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=125.68 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEeccc
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 185 (401)
.++|||+|||+++|+++|+++|++| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+++..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4679999999999999999999999 899999999876 999999999999999999999 7899999999999988864
Q ss_pred c
Q 015763 186 K 186 (401)
Q Consensus 186 ~ 186 (401)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 248
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.2e-17 Score=124.04 Aligned_cols=79 Identities=28% Similarity=0.534 Sum_probs=70.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
++|||+|||..+++++|+++|++||.|..|.|..++.++ +|||||+|.+.+ |.+|+..|||..|.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999887643 899999999999 99999999999999999999999876
Q ss_pred Cc
Q 015763 361 TD 362 (401)
Q Consensus 361 ~~ 362 (401)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 249
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=119.96 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhc--CCccCCeEEEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCS 181 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~--~~~~~g~~l~v~ 181 (401)
...++|||+|||+.+++++|+.+|++||.|..|.++++ +|||||+|.+.++|.+|+..|+ +..+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998764 7899999999999999999775 567999999999
Q ss_pred ecccc
Q 015763 182 LSETK 186 (401)
Q Consensus 182 ~~~~~ 186 (401)
++.++
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99764
No 250
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-17 Score=122.00 Aligned_cols=81 Identities=28% Similarity=0.524 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+.+++++|+++|.+||.| +++.+ .+++++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4467899999999999999999999999977 55555 5799999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98754
No 251
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-17 Score=131.08 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+++|+++|+.+|.+||.|..+.++.+..+|+++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467899999999999999999999999999886677777789999999999999999999998 999999999999999
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
+.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 252
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.1e-17 Score=123.01 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=71.1
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
..++|||+|||..+++++|+.+|++||.|..|+|.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 4589999999999999999999999999999999843 589999999999999999999999999999999999864
No 253
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=126.32 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
...++|||+|||+.+++++|+ .+|++||.|..|.+.+ +++++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 6999999999988754 588999999999999999999999999999999999
Q ss_pred EEecccccc
Q 015763 180 CSLSETKNR 188 (401)
Q Consensus 180 v~~~~~~~~ 188 (401)
|.++..+..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987643
No 254
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=119.82 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=69.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|.+ ++.+.+ ||||+|.+.++|.+|+. |||..|+|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34579999999999999999999999999999833 332223 99999999999999999 999999999999999876
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 5443
No 255
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-18 Score=135.09 Aligned_cols=84 Identities=17% Similarity=0.323 Sum_probs=76.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeE--------EEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~--------v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
.+.++|||+|||..+++++|+.+|++||.|.. |.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45689999999999999999999999999998 8888886533 8999999999999999999999999999
Q ss_pred eEEEEEeccCCCcC
Q 015763 350 QVLEVVLAKPQTDK 363 (401)
Q Consensus 350 ~~l~v~~a~~~~~~ 363 (401)
++|+|.||+++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876443
No 256
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3e-17 Score=118.07 Aligned_cols=74 Identities=22% Similarity=0.461 Sum_probs=69.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
++|||+|||..+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..++ ..|+|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999887543 8999999999999999999999 9999999999987
No 257
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=123.73 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC--CccCCeEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~--~~~~g~~l~v 180 (401)
.+..++|||+|||+++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.|++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999999999999875 78999999999999999998874 6899999999
Q ss_pred Eeccccc
Q 015763 181 SLSETKN 187 (401)
Q Consensus 181 ~~~~~~~ 187 (401)
.++.++.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9997653
No 258
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=123.69 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=74.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCee--------CCe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI--------DGQ 350 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i--------~g~ 350 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456899999999999999999999999999999999988555 89999999999999999999999999 688
Q ss_pred EEEEEeccCC
Q 015763 351 VLEVVLAKPQ 360 (401)
Q Consensus 351 ~l~v~~a~~~ 360 (401)
+|.|.||.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999864
No 259
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.6e-17 Score=132.65 Aligned_cols=80 Identities=14% Similarity=0.303 Sum_probs=73.0
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||+.+|+++|+++|++|| |..|+|+.++.+. +|||||+|.+.++|.+|| .+|+..|.||.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4567999999999999999999999999 7799999988766 999999999999999999 689999999999999988
Q ss_pred CCC
Q 015763 359 PQT 361 (401)
Q Consensus 359 ~~~ 361 (401)
+..
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 260
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.1e-17 Score=118.27 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
+|||+|||+++++++|+.+|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999999874
No 261
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=120.52 Aligned_cols=79 Identities=25% Similarity=0.442 Sum_probs=70.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|. +.++.+ ..+|||||+|.+.++|.+|+..|||..|.|++|+|.||++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4468999999999999999999999999996 555543 2379999999999999999999999999999999999987
Q ss_pred CC
Q 015763 360 QT 361 (401)
Q Consensus 360 ~~ 361 (401)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 262
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=4.9e-17 Score=122.30 Aligned_cols=81 Identities=20% Similarity=0.380 Sum_probs=70.8
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..+ ......+|||||+|.+.++|.+|+..|||..|.|++|+|.||++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 456899999999999999999999999988766 22222289999999999999999999999999999999999988
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 91 ~~~~ 94 (96)
T 1fjc_A 91 KGGT 94 (96)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 263
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.7e-16 Score=120.54 Aligned_cols=83 Identities=24% Similarity=0.458 Sum_probs=75.2
Q ss_pred hhhcCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCe
Q 015763 97 AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (401)
Q Consensus 97 ~~~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~ 176 (401)
......+...++|||+|||+++++++|+.+|++||.|..|++. +++|||||+|.+.++|.+|+..||+..+.|+
T Consensus 18 ~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 18 HIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp HHHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred hhhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3444556678999999999999999999999999999999997 3589999999999999999999999999999
Q ss_pred EEEEEeccc
Q 015763 177 TIRCSLSET 185 (401)
Q Consensus 177 ~l~v~~~~~ 185 (401)
.|+|.++.+
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 999999875
No 264
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=120.55 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCC--ccCCeEEEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 181 (401)
...++|||+|||+.+++++|+.+|++||.|..|.++++ ||||||+|.+.++|.+|+..|++. .+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45789999999999999999999999999999998763 789999999999999999988764 4899999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998653
No 265
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.5e-16 Score=117.49 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+.+|++| .|..+++. +++|||||+|.+.++|.+|+..||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 356889999999999999999999999 99999884 57999999999999999999999999999999999999
Q ss_pred ccccccccCCC
Q 015763 184 ETKNRLFIGNV 194 (401)
Q Consensus 184 ~~~~~l~v~~l 194 (401)
.....+++.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88887777663
No 266
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=117.27 Aligned_cols=78 Identities=35% Similarity=0.632 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+++++++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999987 57999999999999999999999999999999999
Q ss_pred cccccc
Q 015763 183 SETKNR 188 (401)
Q Consensus 183 ~~~~~~ 188 (401)
+.++..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987543
No 267
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=126.39 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCC---eeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
....++|||+|||+++|+++|+.+|++||. |..|+++.++. |+++|||||+|.+.++|.+||. +++..+.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999997 999999999999
Q ss_pred EEeccc
Q 015763 180 CSLSET 185 (401)
Q Consensus 180 v~~~~~ 185 (401)
|.++.+
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998865
No 268
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=119.72 Aligned_cols=82 Identities=32% Similarity=0.573 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+++++++|+++|+.|+ .|.++.++.+++++|||||+|.+.++|.+||..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44678899999999999999999999874 677888888899999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98754
No 269
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-17 Score=125.10 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=71.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCC-CC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~-~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||..+++++|+.+|++||.|.. .++.+.. +. +|||||+|.+.++|.+|+. |||..|.|+.|+|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45689999999999999999999999998887 4444433 23 8999999999999999999 9999999999999999
Q ss_pred cCCCcC
Q 015763 358 KPQTDK 363 (401)
Q Consensus 358 ~~~~~~ 363 (401)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876443
No 270
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=118.47 Aligned_cols=79 Identities=18% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC--CeEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~--g~~l~v 180 (401)
+...++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+..||+..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 346688999999999999999999999999999998753 789999999999999999999999999 999999
Q ss_pred Eeccccc
Q 015763 181 SLSETKN 187 (401)
Q Consensus 181 ~~~~~~~ 187 (401)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998753
No 271
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=4.2e-17 Score=129.90 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=74.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCC---eeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~---i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++.+. +|||||+|.+.++|.+|+. ||+..|+||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 45689999999999999999999999999 8899999888766 9999999999999999999 99999999999999
Q ss_pred eccCCC
Q 015763 356 LAKPQT 361 (401)
Q Consensus 356 ~a~~~~ 361 (401)
+|.+..
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 997643
No 272
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8e-16 Score=115.80 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=70.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|| .+++++|+.+|++||.|..|.|.. .+|||||+|.+.++|.+|+..||+..|.|++|+|.||++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 45689999996 899999999999999999999953 258999999999999999999999999999999999988
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 273
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=9.7e-17 Score=120.93 Aligned_cols=84 Identities=18% Similarity=0.369 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~ 177 (401)
..+..++|||+|||+++++++|+ .+|++||.|..|.+.+ +|+++|||||+|.+.++|.+|+..||+..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34578899999999999999999 9999999999998874 4788999999999999999999999999999999
Q ss_pred EEEEecccccc
Q 015763 178 IRCSLSETKNR 188 (401)
Q Consensus 178 l~v~~~~~~~~ 188 (401)
|+|.++.++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999987654
No 274
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=121.40 Aligned_cols=81 Identities=25% Similarity=0.609 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+.+++++|+.+|++||.|..|.++.+ +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4567889999999999999999999999999999999875 7899999999999999999999999999999999
Q ss_pred ecccccc
Q 015763 182 LSETKNR 188 (401)
Q Consensus 182 ~~~~~~~ 188 (401)
++.+...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9987643
No 275
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=112.96 Aligned_cols=76 Identities=22% Similarity=0.353 Sum_probs=67.1
Q ss_pred cccce-EEEccCCCCCCHHH----HHHHHhhc-CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEE
Q 015763 280 SQVKA-LYVKNIPDNTSTEK----IKELFQRH-GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (401)
Q Consensus 280 ~~~~~-l~v~nlp~~~t~e~----l~~~f~~~-G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (401)
+++.| |||+|||..+++++ |+++|++| |.|.+|. .|+|||.|.+.++|.+|++.|+|..|.||+|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 34455 89999999999988 55899999 5999992 18999999999999999999999999999999
Q ss_pred EEeccCCCcC
Q 015763 354 VVLAKPQTDK 363 (401)
Q Consensus 354 v~~a~~~~~~ 363 (401)
|.||+.+..-
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9999987653
No 276
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=119.86 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=70.5
Q ss_pred cccceEEE--ccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCee-----CCeEE
Q 015763 280 SQVKALYV--KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI-----DGQVL 352 (401)
Q Consensus 280 ~~~~~l~v--~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i-----~g~~l 352 (401)
.++++||| +||+..+++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||..| .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 45678999 669999999999999999999999999764 58999999999999999999999998 79999
Q ss_pred EEEeccCC
Q 015763 353 EVVLAKPQ 360 (401)
Q Consensus 353 ~v~~a~~~ 360 (401)
.|.|+...
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99999854
No 277
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=4e-16 Score=117.33 Aligned_cols=79 Identities=25% Similarity=0.448 Sum_probs=71.3
Q ss_pred cCCCCCCCeEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 100 LALPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 100 ~~~~~~~~~v~v~nlp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
....+..++|||+|||+ ++++++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455789999999998 99999999999999999999883 7899999999999999999999999999999
Q ss_pred EEEecccc
Q 015763 179 RCSLSETK 186 (401)
Q Consensus 179 ~v~~~~~~ 186 (401)
+|.++.++
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998764
No 278
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.3e-16 Score=120.36 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC-----eE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-----KT 177 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g-----~~ 177 (401)
....++|||+|||+++++++|+++|.+||.|..|.++.+ |||||+|.+.++|.+||+.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999875 799999999999999999999999999 99
Q ss_pred EEEEeccccc
Q 015763 178 IRCSLSETKN 187 (401)
Q Consensus 178 l~v~~~~~~~ 187 (401)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 279
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-17 Score=126.35 Aligned_cols=82 Identities=22% Similarity=0.345 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+.+|++||.|.. .++.+..+|+++|||||+|.+.++|.+||+ |++..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35678999999999999999999999998877 666777779999999999999999999998 9999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.++.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 280
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=117.88 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=72.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEE-EecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v-~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+.+|++||.|..| .|+.++.+ +.|||+|.+.++|.+|+..|||..|.|++|+|.||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 346899999999999999999999999999999 58777654 459999999999999999999999999999999999
Q ss_pred CCC
Q 015763 359 PQT 361 (401)
Q Consensus 359 ~~~ 361 (401)
++.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
No 281
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=113.04 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHH----HHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeE
Q 015763 103 PPNGSEVFIGGLPKDASEED----LRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~----l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~ 177 (401)
++..++|||+|||+.+++++ |+++|.+|| .|..| ++ |+|||.|.+.++|.+|++.|+|..+.||.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34445599999999999988 558999995 99888 34 99999999999999999999999999999
Q ss_pred EEEEecccccccccCC
Q 015763 178 IRCSLSETKNRLFIGN 193 (401)
Q Consensus 178 l~v~~~~~~~~l~v~~ 193 (401)
|+|.++..++.++...
T Consensus 76 i~v~~A~~~sd~~~~~ 91 (96)
T 2diu_A 76 IIVSFTPKNRELCETS 91 (96)
T ss_dssp CEEESSCCSCCCCCCC
T ss_pred EEEEecCCCcceeEec
Confidence 9999999888766543
No 282
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=2.1e-16 Score=122.80 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=66.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeE-----EEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV-----LEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~-----l~v 354 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|+. |+|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 34589999999999999999999999999999999877 79999999999999999999999999998 666
Q ss_pred EeccCC
Q 015763 355 VLAKPQ 360 (401)
Q Consensus 355 ~~a~~~ 360 (401)
..+.+.
T Consensus 89 ~~~~~~ 94 (115)
T 3beg_B 89 KVDGPR 94 (115)
T ss_dssp EECC--
T ss_pred ccCCCC
Confidence 666653
No 283
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-17 Score=125.07 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=75.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCC---eeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~---i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
...++|||+|||+.+++++|+++|+.||. |..|+|+.++.+. +|||||+|.+.++|.+|+. +|+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45689999999999999999999999988 8999999988765 9999999999999999999 89999999999999
Q ss_pred eccCCC
Q 015763 356 LAKPQT 361 (401)
Q Consensus 356 ~a~~~~ 361 (401)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 998754
No 284
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7e-17 Score=126.25 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCe----eEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i----~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
...++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||.. |+..|.||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 467899999999999999999999999975 689999884 799999999999999999999975 99999999999
Q ss_pred EEeccc
Q 015763 180 CSLSET 185 (401)
Q Consensus 180 v~~~~~ 185 (401)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988743
No 285
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.6e-16 Score=121.88 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhcccC-CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
..+...++|||+|||+++++++|+++|++|| .|..+.+.. .+++|||||+|.+.++|.+||..||+..|.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456778999999999999999999999999 899998853 34799999999999999999999999999999999
Q ss_pred EEecccc
Q 015763 180 CSLSETK 186 (401)
Q Consensus 180 v~~~~~~ 186 (401)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998643
No 286
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=115.30 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHh-cCCccCCeEEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 181 (401)
....++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 446788999999999999999999999999999999863 789999999999999999988 9999999999999
Q ss_pred ecc
Q 015763 182 LSE 184 (401)
Q Consensus 182 ~~~ 184 (401)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 287
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=9.1e-17 Score=114.87 Aligned_cols=73 Identities=26% Similarity=0.455 Sum_probs=68.2
Q ss_pred eEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 284 ~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
+|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+.. ++..|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999887643 89999999999999999995 999999999999986
No 288
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=118.34 Aligned_cols=79 Identities=28% Similarity=0.485 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+.+|.+||.|. +.++. ++++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999986 66654 467999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 289
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6e-17 Score=126.18 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCe----eEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i----~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
...++|||+|||+++|+++|+.+|.+||.| ..+.+. +++++|||||+|.+.++|.+|+..|++..|.|+.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 467899999999999999999999999988 445444 689999999999999999999999999999999999
Q ss_pred EEeccccc
Q 015763 180 CSLSETKN 187 (401)
Q Consensus 180 v~~~~~~~ 187 (401)
|.++.++.
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99998654
No 290
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=4.8e-16 Score=119.23 Aligned_cols=78 Identities=31% Similarity=0.567 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+++++++|+.+|++||.|..|.++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34577899999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.+..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 997653
No 291
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.4e-16 Score=124.79 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCee--EEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~--~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
+...++|||+|||+++|+++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3467889999999999999999999999 677 899999987 9999999999999999999996 4789999999999
Q ss_pred Eeccc
Q 015763 181 SLSET 185 (401)
Q Consensus 181 ~~~~~ 185 (401)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 292
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=3.5e-16 Score=131.02 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+.+++++|+.+|++||.|..|.++.+. ++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecccccc
Q 015763 182 LSETKNR 188 (401)
Q Consensus 182 ~~~~~~~ 188 (401)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9876543
No 293
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.8e-16 Score=121.31 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=72.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecC----HHH----HHHHHH--HhcCCc
Q 015763 107 SEVFIGGL----PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS----KEF----AKKAID--ELHSKE 172 (401)
Q Consensus 107 ~~v~v~nl----p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~----~~~----a~~a~~--~l~~~~ 172 (401)
+.|||+|| |+.+++.+|+++|++||.|..|.++.|+.||+++|||||+|.+ ++. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999996 433 888888 789999
Q ss_pred cCCeEEEEEecccc
Q 015763 173 LKGKTIRCSLSETK 186 (401)
Q Consensus 173 ~~g~~l~v~~~~~~ 186 (401)
|.|+.|+|.+-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999986543
No 294
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=9.2e-18 Score=130.98 Aligned_cols=84 Identities=32% Similarity=0.516 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeE--------EEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g 175 (401)
...++|||+|||+.+++++|+.+|++||.|.. |.++.++.+++++|||||+|.+.++|.+|+..|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46788999999999999999999999999998 8999998889999999999999999999999999999999
Q ss_pred eEEEEEeccccc
Q 015763 176 KTIRCSLSETKN 187 (401)
Q Consensus 176 ~~l~v~~~~~~~ 187 (401)
+.|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987653
No 295
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.65 E-value=3e-16 Score=115.83 Aligned_cols=77 Identities=18% Similarity=0.359 Sum_probs=70.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+++|++| .|..|.|. ..+|||||+|.+.++|.+|+..|||..|.|++|+|.||+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 345799999999999999999999999 99999985 2379999999999999999999999999999999999976
Q ss_pred CC
Q 015763 360 QT 361 (401)
Q Consensus 360 ~~ 361 (401)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 296
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.8e-16 Score=119.17 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+.+++++|+.+|.+||.|..+ ..+++++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 56789999999999999999999999988666 3458899999999999999999999999999999999999997
Q ss_pred ccc
Q 015763 185 TKN 187 (401)
Q Consensus 185 ~~~ 187 (401)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 297
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.6e-16 Score=114.71 Aligned_cols=79 Identities=28% Similarity=0.474 Sum_probs=72.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|||+.+++++|+.+|++||.|..|.++ ++||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999997 3499999999999999999999999999999999
Q ss_pred ecccccc
Q 015763 182 LSETKNR 188 (401)
Q Consensus 182 ~~~~~~~ 188 (401)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987643
No 298
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.1e-16 Score=121.86 Aligned_cols=81 Identities=28% Similarity=0.533 Sum_probs=75.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++++++|+.+|++||.|..|.++.++ +|+++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56789999999999999999999999999999999998 89999999999999999999997 9999999999999987
Q ss_pred cccc
Q 015763 185 TKNR 188 (401)
Q Consensus 185 ~~~~ 188 (401)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 6543
No 299
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=7.2e-16 Score=120.54 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=71.0
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCe-EEEEeCCHHHHHHHHHhhcCCeeCC--eEEEEEecc
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAK 358 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~ 358 (401)
.-.|+|+||++.+|+++|+++|++||.|.+|+|.... +|| |||+|.+.++|..|+..|||..|.| ++|+|.||+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3567899999999999999999999999999997643 477 9999999999999999999999988 999999999
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
+..-
T Consensus 105 ~~~l 108 (130)
T 3zzy_A 105 LTSL 108 (130)
T ss_dssp CSSC
T ss_pred CCce
Confidence 8644
No 300
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.9e-16 Score=114.12 Aligned_cols=77 Identities=35% Similarity=0.554 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+++++++|+.+|++||.|..|.+++ +||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678899999999999999999999999999999973 4999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98653
No 301
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=2.6e-16 Score=119.74 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=74.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+.+|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 456899999999999999999999999999999999988555 8999999999999999999 9999999999999998
Q ss_pred CCCcC
Q 015763 359 PQTDK 363 (401)
Q Consensus 359 ~~~~~ 363 (401)
++...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 76544
No 302
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=8e-17 Score=128.66 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+++|+++|+++|++|| |..|+|+.++. |+++|||||+|.+.++|.+|| .+++..|.|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34678899999999999999999999999 77999999986 999999999999999999999 7899999999999988
Q ss_pred cccc
Q 015763 183 SETK 186 (401)
Q Consensus 183 ~~~~ 186 (401)
+.+.
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
No 303
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=6.3e-16 Score=129.46 Aligned_cols=83 Identities=29% Similarity=0.446 Sum_probs=77.3
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
...++|||+|||..+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 557899999999999999999999999999999999988554 8999999999999999999999999999999999998
Q ss_pred CCCc
Q 015763 359 PQTD 362 (401)
Q Consensus 359 ~~~~ 362 (401)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 7644
No 304
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=1.3e-15 Score=112.40 Aligned_cols=76 Identities=22% Similarity=0.446 Sum_probs=63.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCe--eCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~v~~a 357 (401)
.+.++|||+|||+.+++++|+++|++||.|..|+|+++ +||||||+|.+.++|.+ |++.. +.|++|.|.+|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 55689999999999999999999999999999999885 47999999999999983 45544 46999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87644
No 305
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.64 E-value=9.2e-16 Score=116.85 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+++|.+||.|..|.++ ++||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456889999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.+..
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8654
No 306
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-16 Score=125.87 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=71.7
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeE-EEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~-v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
...++|||+|||+.+++++|+.+|++||.|.. +.|.....+. +|||||+|.+.++|.+||. ||+..|+|+.|.|.+|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999987 4444444444 8999999999999999999 9999999999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8754
No 307
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=114.50 Aligned_cols=79 Identities=23% Similarity=0.460 Sum_probs=67.5
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+++++|+.+|++||.|..|+|+.+ .+|||||+|.+.++|.+|+. ....+.|++|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 34589999999999999999999999999999999875 46899999999999976433 23556999999999987
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 308
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=123.74 Aligned_cols=81 Identities=14% Similarity=0.272 Sum_probs=72.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCe----eEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i----~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
....+|||+|||+.+|+++|+++|++||.| ..|+|+.+..+. +|||||+|.+.++|.+|+.. |+..|.||.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 345799999999999999999999999975 689998887666 99999999999999999996 999999999999
Q ss_pred EeccCCC
Q 015763 355 VLAKPQT 361 (401)
Q Consensus 355 ~~a~~~~ 361 (401)
..+.+..
T Consensus 100 ~~a~~~e 106 (123)
T 2dha_A 100 FRSTAAE 106 (123)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 309
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=119.64 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+.+++++|+.+|++||.|..|.+.+ ++|||||+|.+.++|.+|+..||+..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467899999999999999999999999999998864 57899999999999999999999999999999999986
Q ss_pred c
Q 015763 185 T 185 (401)
Q Consensus 185 ~ 185 (401)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 310
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.63 E-value=7.6e-16 Score=125.86 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.....++|||+|||+.+++++|+.+|++||.|..|+++++ ++|||||+|.+.++|.+|+..||+..+.|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3446789999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.+++
T Consensus 144 ~a~~~~ 149 (150)
T 2i2y_A 144 LSNGEK 149 (150)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998753
No 311
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=114.35 Aligned_cols=77 Identities=27% Similarity=0.432 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccc--CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
...++|||+|||+.+++++|+.+|++| |.|..|.+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 367889999999999999999999999 899988774 6799999999999999999999999999999999
Q ss_pred ecccccc
Q 015763 182 LSETKNR 188 (401)
Q Consensus 182 ~~~~~~~ 188 (401)
++.++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 312
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.2e-15 Score=117.36 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=68.9
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCe-EEEEeCCHHHHHHHHHhhcCCeeCC--eEEEEEeccC
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAKP 359 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~~ 359 (401)
..|||+|||+.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|..|+..|||..|.| +.|+|.||++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecC
Confidence 45679999999999999999999999999999753 286 9999999999999999999999987 6999999998
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
+..
T Consensus 102 ~~l 104 (124)
T 2e5i_A 102 TRL 104 (124)
T ss_dssp SCC
T ss_pred Ccc
Confidence 753
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=5.6e-16 Score=116.41 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 103 ~~~~~~v~v~nlp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
....++|||+|||+ .+++++|+.+|++||.|..|.+. +|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45688999999999 99999999999999999999984 7899999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.++.
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 987653
No 314
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=3.6e-16 Score=122.43 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=72.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCee--EEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~--~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
...++|||+|||+.+|+++|+++|++| .|. .|+|+.++.+. +|||||+|.+.++|.+|+.. ++..|+||.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 445789999999999999999999999 677 99999988866 99999999999999999995 78999999999999
Q ss_pred ccCCC
Q 015763 357 AKPQT 361 (401)
Q Consensus 357 a~~~~ 361 (401)
+..+.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87543
No 315
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=1.5e-15 Score=115.40 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=72.3
Q ss_pred cccceEEEccCCC-----CCCHHHHHHHHhhcCCeeEEEecCCCCC--C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeE
Q 015763 280 SQVKALYVKNIPD-----NTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (401)
Q Consensus 280 ~~~~~l~v~nlp~-----~~t~e~l~~~f~~~G~i~~v~i~~~~~~--~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (401)
.++++|+|+||.. .-++++|+++|++||.|.+|.|++++.+ . +|||||+|.+.++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5678999999962 2378999999999999999999987542 3 899999999999999999999999999999
Q ss_pred EEEEeccCCCc
Q 015763 352 LEVVLAKPQTD 362 (401)
Q Consensus 352 l~v~~a~~~~~ 362 (401)
|+|.|+.+..-
T Consensus 86 i~v~~a~~~~f 96 (105)
T 2pe8_A 86 VKACFYNLDKF 96 (105)
T ss_dssp CEEEECCHHHH
T ss_pred EEEEEcCHHHh
Confidence 99999987443
No 316
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=3.8e-16 Score=126.59 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=70.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEE--------EecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV--------VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v--------~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (401)
.+.++|||+|||+.+++++|+.+|++||.|..+ ++.. ....+|||||+|.+.++|.+|+..|||..|.|++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456899999999999999999999999998764 3322 2223899999999999999999999999999999
Q ss_pred EEEEeccCCCcC
Q 015763 352 LEVVLAKPQTDK 363 (401)
Q Consensus 352 l~v~~a~~~~~~ 363 (401)
|+|.||++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876443
No 317
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=117.84 Aligned_cols=78 Identities=29% Similarity=0.481 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCC---CCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|++ +.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4578899999999999999999999999999 888888777 79999999999999999999998843 67777766
Q ss_pred Eecc
Q 015763 181 SLSE 184 (401)
Q Consensus 181 ~~~~ 184 (401)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6544
No 318
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.4e-15 Score=131.88 Aligned_cols=83 Identities=12% Similarity=0.292 Sum_probs=75.4
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
.+.++|||+|||..+++++|+++|++||.|.+|+|++++.++ +|||||+|.+.++|.+|+..||+..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 456899999999999999999999999999999999887644 899999999999999999999999999999999999
Q ss_pred cCCCc
Q 015763 358 KPQTD 362 (401)
Q Consensus 358 ~~~~~ 362 (401)
.....
T Consensus 93 ~~~~~ 97 (213)
T 4f02_A 93 QRDPS 97 (213)
T ss_dssp CCCTH
T ss_pred ccccc
Confidence 76543
No 319
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.5e-15 Score=124.82 Aligned_cols=82 Identities=27% Similarity=0.549 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
....++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 015763 183 SE 184 (401)
Q Consensus 183 ~~ 184 (401)
+.
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 320
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.9e-16 Score=115.22 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCC-eeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC-CccCCeEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~-~~~~g~~l~v 180 (401)
+...++|||+|||+++++++|+.+|++||. |..+.+. ++|||||+|.+.++|.+|+..||+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456788999999999999999999999998 6555552 478999999999999999999999 9999999999
Q ss_pred Eeccccc
Q 015763 181 SLSETKN 187 (401)
Q Consensus 181 ~~~~~~~ 187 (401)
.++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998654
No 321
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=114.69 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEE-EEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..++|||+|||+++++++|+.+|.+||.|..| .++.++.++ .|||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56889999999999999999999999999999 477776543 3999999999999999999999999999999999
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 865
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=127.52 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEE--------EEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV--------RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~--------~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 174 (401)
....++|||+|||+.+|+++|+.+|++||.|..+ ++. .+|+++|||||+|.+.++|.+|+..||+..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4467899999999999999999999999988764 333 35899999999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 015763 175 GKTIRCSLSETK 186 (401)
Q Consensus 175 g~~l~v~~~~~~ 186 (401)
|+.|.|.++.+.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999999764
No 323
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=4.2e-15 Score=126.32 Aligned_cols=121 Identities=16% Similarity=0.229 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHhcCCcccCCCCCeeeecCCCCCCCCc---ccccccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEec
Q 015763 239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS---AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (401)
Q Consensus 239 ~~~~a~~a~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~ 315 (401)
+...+..|+.......+.+.+....+........+... ......++|||+|||..+++++|+.+|++||.|..|+|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 34455555554433455666666666665322222110 022346899999999999999999999999999999999
Q ss_pred CCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 316 PGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 316 ~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
++..+. +|||||+|.+.++|.+|+..+ +..|+|++|+|.+++.-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 887766 999999999999999999865 46999999999998763
No 324
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.61 E-value=1.7e-15 Score=116.84 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..++|||+|||+. +++++|+.+|.+||.|..|.+ ++|||||+|.+.++|.+|+..|++..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999988 4789999999999999999999999999999999998
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.+.
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 325
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.61 E-value=3.5e-15 Score=124.28 Aligned_cols=83 Identities=16% Similarity=0.332 Sum_probs=76.3
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
+.++|||+|||..+++++|+++|++||.|..|.|.+++.++ +|||||+|.+.++|.+|+..|+|..|.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35799999999999999999999999999999999886544 8999999999999999999999999999999999998
Q ss_pred CCCcC
Q 015763 359 PQTDK 363 (401)
Q Consensus 359 ~~~~~ 363 (401)
+....
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=3.3e-15 Score=109.98 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=67.2
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhc----C-------CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRH----G-------EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~----G-------~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~ 348 (401)
...++|||+|||..+++++|+.+|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 456899999999999999999999999 8 8999999876 489999999999999999 99999999
Q ss_pred CeEEEEEe
Q 015763 349 GQVLEVVL 356 (401)
Q Consensus 349 g~~l~v~~ 356 (401)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 327
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=112.38 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+.+|.+||.|..| +.++.+++ ||||+|.+.++|.+||. |++..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356789999999999999999999999999987 55555555 99999999999999998 9999999999999988
Q ss_pred ccc
Q 015763 184 ETK 186 (401)
Q Consensus 184 ~~~ 186 (401)
.++
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 328
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=4e-15 Score=127.86 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=72.8
Q ss_pred ccceEEEccCC-CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 281 QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 281 ~~~~l~v~nlp-~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
++++|||+||| ..+++++|+.+|++||.|.+|+|++++ +|||||+|.+.++|..|+..|||..|.|++|+|.|++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 45799999999 899999999999999999999998764 68999999999999999999999999999999999986
Q ss_pred CC
Q 015763 360 QT 361 (401)
Q Consensus 360 ~~ 361 (401)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 329
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=3.8e-15 Score=124.59 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
..++|||+|||+.+++++|+++|++||.|..+.+.+++.+|+++|||||+|.+.++|.+|+..||+..+.|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4688999999999999999999999999999999999889999999999999999999999999999999999999987
No 330
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=4.4e-15 Score=123.44 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=75.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC-C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~-~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
.++|||+|||..+++++|+++|++||.|..|.|.+++.+ . +|||||+|.+.++|.+|+..|||..|.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 479999999999999999999999999999999988743 3 89999999999999999999999999999999999987
Q ss_pred CCc
Q 015763 360 QTD 362 (401)
Q Consensus 360 ~~~ 362 (401)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 644
No 331
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=2.4e-15 Score=143.64 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+.+|+++|+.+|.+||.|..|.|+.++.+|+++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred cc
Q 015763 185 TK 186 (401)
Q Consensus 185 ~~ 186 (401)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 64
No 332
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.59 E-value=7.3e-15 Score=127.64 Aligned_cols=84 Identities=19% Similarity=0.472 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+..||+..|.|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 46689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccc
Q 015763 184 ETKN 187 (401)
Q Consensus 184 ~~~~ 187 (401)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8753
No 333
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=8.3e-15 Score=111.27 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHhhcccCCeeEEEEeeCCCC-CCceeEEEEEecCHHHHHHHHHHhcCCccCCe
Q 015763 103 PPNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (401)
Q Consensus 103 ~~~~~~v~v~nlp~-----~~t~~~l~~~f~~~g~i~~~~~~~~~~~-g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~ 176 (401)
+..+++|+|+||.. +-++++|+.+|++||.|.+|.+++++.+ ++++|||||+|.+.++|.+|+..|||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999973 2378899999999999999999988654 68999999999999999999999999999999
Q ss_pred EEEEEeccc
Q 015763 177 TIRCSLSET 185 (401)
Q Consensus 177 ~l~v~~~~~ 185 (401)
.|+|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999875
No 334
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7.3e-15 Score=110.50 Aligned_cols=77 Identities=19% Similarity=0.452 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|| ++++++|+.+|.+||.|..|.+. +++|||||+|.+.++|.+||..|++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999984 56889999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 184 ETKNR 188 (401)
Q Consensus 184 ~~~~~ 188 (401)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87543
No 335
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=111.93 Aligned_cols=82 Identities=11% Similarity=0.197 Sum_probs=70.2
Q ss_pred cccceEEEccCCCCCC-----------HHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeC
Q 015763 280 SQVKALYVKNIPDNTS-----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t-----------~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~ 348 (401)
.++++|+|.||..... +++|+.+|++||.|..|.|. ++. .+|||||+|.+.++|.+|+..|||..|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH-PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC-TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC-CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5678999999954332 57999999999999999774 332 4899999999999999999999999999
Q ss_pred CeEEEEEeccCCCcC
Q 015763 349 GQVLEVVLAKPQTDK 363 (401)
Q Consensus 349 g~~l~v~~a~~~~~~ 363 (401)
|++|+|.|+.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999876443
No 336
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.58 E-value=5.8e-15 Score=126.48 Aligned_cols=85 Identities=27% Similarity=0.524 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEe
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 182 (401)
+...++|||+|||+.+++++|+++|++||.|..|.+..++.+|.++|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccccc
Q 015763 183 SETKN 187 (401)
Q Consensus 183 ~~~~~ 187 (401)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98753
No 337
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.5e-15 Score=113.93 Aligned_cols=78 Identities=24% Similarity=0.349 Sum_probs=68.6
Q ss_pred CCCCCCCeEEE--cCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc-----
Q 015763 101 ALPPNGSEVFI--GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL----- 173 (401)
Q Consensus 101 ~~~~~~~~v~v--~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~----- 173 (401)
......++||| +|||+.+++++|+++|++||.|..|.+.. .+|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34446788999 77999999999999999999999998753 278999999999999999999999987
Q ss_pred CCeEEEEEecc
Q 015763 174 KGKTIRCSLSE 184 (401)
Q Consensus 174 ~g~~l~v~~~~ 184 (401)
.|+.|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68889888765
No 338
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.58 E-value=5e-15 Score=112.57 Aligned_cols=82 Identities=16% Similarity=0.291 Sum_probs=71.6
Q ss_pred cccceEEEccC--CCCCC--------HHHHHHHHhhcCCeeEEEecCCCCC----CCCeEEEEeCCHHHHHHHHHhhcCC
Q 015763 280 SQVKALYVKNI--PDNTS--------TEKIKELFQRHGEVTKVVMPPGKSG----KRDFGFIHYAERSSALKAVKDTEKY 345 (401)
Q Consensus 280 ~~~~~l~v~nl--p~~~t--------~e~l~~~f~~~G~i~~v~i~~~~~~----~kg~afV~f~~~~~A~~A~~~l~g~ 345 (401)
.++++|+|.|+ |..+. .++|++.|++||.|.+|.|+++..+ .+|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999 43443 3689999999999999999988754 3899999999999999999999999
Q ss_pred eeCCeEEEEEeccCCC
Q 015763 346 EIDGQVLEVVLAKPQT 361 (401)
Q Consensus 346 ~i~g~~l~v~~a~~~~ 361 (401)
.|+||.|+|.|+.+..
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999997654
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.2e-15 Score=113.80 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=70.5
Q ss_pred ceEEEccC----CCCCCHHHHHHHHhhcCCeeEEEecCCCCCC--CCeEEEEeCC----HHH----HHHHHH--hhcCCe
Q 015763 283 KALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAE----RSS----ALKAVK--DTEKYE 346 (401)
Q Consensus 283 ~~l~v~nl----p~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~--kg~afV~f~~----~~~----A~~A~~--~l~g~~ 346 (401)
+.|||+|| |+.+++..|+.+|++||.|..+.++.++.+. +|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999886 9999999996 433 889988 789999
Q ss_pred eCCeEEEEEeccCC
Q 015763 347 IDGQVLEVVLAKPQ 360 (401)
Q Consensus 347 i~g~~l~v~~a~~~ 360 (401)
|+|++|+|.+.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999998764
No 340
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=7e-15 Score=108.49 Aligned_cols=77 Identities=31% Similarity=0.540 Sum_probs=62.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc--cCCeEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIR 179 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~--~~g~~l~ 179 (401)
.+...++|||+|||+++|+++|+++|++||.|..|+++++ ++|||||+|.+.++|.+ +++.. +.|+.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3457789999999999999999999999999999999864 69999999999999984 35554 4699999
Q ss_pred EEeccccc
Q 015763 180 CSLSETKN 187 (401)
Q Consensus 180 v~~~~~~~ 187 (401)
|.++.++.
T Consensus 78 v~~a~~k~ 85 (89)
T 3d2w_A 78 ISNAEPKH 85 (89)
T ss_dssp EEECC---
T ss_pred EEEcCCCC
Confidence 99987653
No 341
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=2.5e-15 Score=125.09 Aligned_cols=81 Identities=23% Similarity=0.559 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999996 89999999999999998
Q ss_pred cc
Q 015763 185 TK 186 (401)
Q Consensus 185 ~~ 186 (401)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 342
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=5.1e-15 Score=115.80 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=70.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|| .+++++|+.+|++||.|..|.|.. .+|||||+|.+.++|.+|+..|||..|.|++|+|.||++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 45689999996 699999999999999999999963 358999999999999999999999999999999999997
Q ss_pred CCcC
Q 015763 360 QTDK 363 (401)
Q Consensus 360 ~~~~ 363 (401)
+...
T Consensus 111 ~~~~ 114 (121)
T 2bz2_A 111 QPML 114 (121)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 6443
No 343
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.57 E-value=1.2e-14 Score=113.53 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeE-EEEEecCHHHHHHHHHHhcCCccCC--eEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTI 178 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~-a~V~f~~~~~a~~a~~~l~~~~~~g--~~l 178 (401)
.+..-..|||+||++.+|+++|+++|++||.|.+|++... ++|| |||+|.+.++|.+|+..|||..|.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3344556889999999999999999999999999988763 3677 9999999999999999999999988 899
Q ss_pred EEEeccccc
Q 015763 179 RCSLSETKN 187 (401)
Q Consensus 179 ~v~~~~~~~ 187 (401)
+|.++++.+
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999998754
No 344
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.57 E-value=1.2e-14 Score=118.03 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC--eEEEE
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRC 180 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g--~~l~v 180 (401)
+....+|||+|||+.+|+++|+++|++||.|..|.+... .++|||||+|.+.++|.+|++.|+|..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 334456899999999999999999999999999998653 258899999999999999999999999965 99999
Q ss_pred Eeccccc
Q 015763 181 SLSETKN 187 (401)
Q Consensus 181 ~~~~~~~ 187 (401)
.+++++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998753
No 345
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=4.3e-15 Score=115.40 Aligned_cols=74 Identities=28% Similarity=0.456 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeE-----EE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-----IR 179 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~-----l~ 179 (401)
..++|||+|||+++++++|+++|.+||.|..|.++.+ |||||+|.+.++|.+||+.||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5688999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred EEeccc
Q 015763 180 CSLSET 185 (401)
Q Consensus 180 v~~~~~ 185 (401)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666554
No 346
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=5.8e-15 Score=108.68 Aligned_cols=71 Identities=25% Similarity=0.545 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc----C-------CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~ 173 (401)
..++|||+|||+++++++|+++|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .||+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56789999999999999999999999 8 8999988644 899999999999999999 9999999
Q ss_pred CCeEEEEEe
Q 015763 174 KGKTIRCSL 182 (401)
Q Consensus 174 ~g~~l~v~~ 182 (401)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 347
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=1.4e-14 Score=123.87 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+.+++++|+++|++||.|..|.++.+..+|+++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999999998999999999999999999999965 899999999999999
Q ss_pred ccccc
Q 015763 184 ETKNR 188 (401)
Q Consensus 184 ~~~~~ 188 (401)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 87643
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=5.1e-14 Score=109.66 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeE-EEEEecCHHHHHHHHHHhcCCccCC--eEEEEEecc
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLSE 184 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~-a~V~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~ 184 (401)
.|||+|||+.+++++|+.+|++||.|..|++... .|| |||+|.+.++|.+|+..|||..|.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999998652 276 9999999999999999999999987 689999998
Q ss_pred ccc
Q 015763 185 TKN 187 (401)
Q Consensus 185 ~~~ 187 (401)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 349
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-14 Score=109.53 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=67.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCC----C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~----~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (401)
...++|||+|||..+++++|+++|++||.|. +.++.+..+ . +|||||+|.+.++|.+|+..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4458999999999999999999999999999 888777653 3 8999999999999999999985 378888888
Q ss_pred EeccCC
Q 015763 355 VLAKPQ 360 (401)
Q Consensus 355 ~~a~~~ 360 (401)
..+...
T Consensus 83 ~~~~~~ 88 (114)
T 2dnl_A 83 VSSPTI 88 (114)
T ss_dssp ECCSSS
T ss_pred ccCCCc
Confidence 766543
No 350
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=3.8e-14 Score=124.32 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=74.9
Q ss_pred ccccceEEEccCCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEec
Q 015763 279 ASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (401)
Q Consensus 279 ~~~~~~l~v~nlp~-~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (401)
..+.++|||+|||. .+++++|+++|++||.|..|+|.+++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 35678999999999 99999999999999999999999876 589999999999999999999999999999999999
Q ss_pred cCCC
Q 015763 358 KPQT 361 (401)
Q Consensus 358 ~~~~ 361 (401)
+...
T Consensus 108 ~~~~ 111 (229)
T 2adc_A 108 KHQN 111 (229)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 8763
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.6e-14 Score=121.41 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+++|+++|+.+|++||.|..|+++++.. ++++|||||+|.+.++|.+|+..+ +..+.|+.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 357899999999999999999999999999999998864 999999999999999999999654 568999999999875
Q ss_pred c
Q 015763 185 T 185 (401)
Q Consensus 185 ~ 185 (401)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 352
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=1.4e-13 Score=124.71 Aligned_cols=81 Identities=17% Similarity=0.420 Sum_probs=73.5
Q ss_pred cccceEEEccCCCCCCHHHHH----HHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~----~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
.+.++|||+|||..+++++|+ ++|++||.|..|+|.+. ...+|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 567899999999999999977 89999999999999872 2238999999999999999999999999999999999
Q ss_pred eccCCC
Q 015763 356 LAKPQT 361 (401)
Q Consensus 356 ~a~~~~ 361 (401)
|++...
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 997755
No 353
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.53 E-value=4.5e-14 Score=118.29 Aligned_cols=79 Identities=27% Similarity=0.577 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccC---CeEEEEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIRCS 181 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~---g~~l~v~ 181 (401)
..++|||+|||+.+|+++|+++|++||.|..+.++++.. |+++|||||+|.+.++|.+|+..||+..+. ++.|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 567899999999999999999999999999999999864 999999999999999999999999998776 4999999
Q ss_pred ecc
Q 015763 182 LSE 184 (401)
Q Consensus 182 ~~~ 184 (401)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8e-15 Score=108.13 Aligned_cols=78 Identities=31% Similarity=0.517 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEec
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 183 (401)
...++|||+|||+++++++|+.+|++||.|..|+++.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35789999999999999999999999999999999764 68999999999999986542 234458999999998
Q ss_pred ccccc
Q 015763 184 ETKNR 188 (401)
Q Consensus 184 ~~~~~ 188 (401)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 355
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=5.4e-14 Score=120.47 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=72.8
Q ss_pred cceEEEccCCC-CCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCC
Q 015763 282 VKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (401)
Q Consensus 282 ~~~l~v~nlp~-~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (401)
+++|||+|||. .+++++|+++|++||.|..|+|..++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 47999999999 99999999999999999999999876 589999999999999999999999999999999999876
Q ss_pred C
Q 015763 361 T 361 (401)
Q Consensus 361 ~ 361 (401)
.
T Consensus 80 ~ 80 (198)
T 1qm9_A 80 N 80 (198)
T ss_dssp S
T ss_pred C
Confidence 4
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=3.6e-14 Score=110.95 Aligned_cols=78 Identities=21% Similarity=0.480 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEE
Q 015763 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 181 (401)
.+...++|||+|| ++++++|+.+|++||.|..|.+. +++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456889999995 69999999999999999999985 468999999999999999999999999999999999
Q ss_pred eccccc
Q 015763 182 LSETKN 187 (401)
Q Consensus 182 ~~~~~~ 187 (401)
++.+..
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998653
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.6e-14 Score=124.00 Aligned_cols=77 Identities=22% Similarity=0.379 Sum_probs=70.7
Q ss_pred cccceEEEccCCCCC---------CHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCee---
Q 015763 280 SQVKALYVKNIPDNT---------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--- 347 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~---------t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i--- 347 (401)
...++|||+|||..+ ++++|+.+|++||.|..|+|+.. +|||||+|.+.++|..|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 567899999999988 79999999999999999999864 58999999999999999999999999
Q ss_pred ---------CCeEEEEEeccCC
Q 015763 348 ---------DGQVLEVVLAKPQ 360 (401)
Q Consensus 348 ---------~g~~l~v~~a~~~ 360 (401)
.|+.|.|.||+..
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 358
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=4.8e-14 Score=118.21 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
..++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56789999999999999999999999988665 4568999999999999999999999999999999999999997
Q ss_pred cc
Q 015763 185 TK 186 (401)
Q Consensus 185 ~~ 186 (401)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 359
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=3.5e-14 Score=109.90 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=70.9
Q ss_pred cccceEEEccCC--CCC---CHHHHHHHHhhcCCeeEEEecCCCCC-----C-CCeEEEEeCCHHHHHHHHHhhcCCeeC
Q 015763 280 SQVKALYVKNIP--DNT---STEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEID 348 (401)
Q Consensus 280 ~~~~~l~v~nlp--~~~---t~e~l~~~f~~~G~i~~v~i~~~~~~-----~-kg~afV~f~~~~~A~~A~~~l~g~~i~ 348 (401)
.++++|+|.|+- ..+ -+++|++.|++||.|.+|+|+++..+ . +|+|||+|.+.++|.+|+..|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 467899999994 222 36899999999999999999987542 2 799999999999999999999999999
Q ss_pred CeEEEEEeccCCC
Q 015763 349 GQVLEVVLAKPQT 361 (401)
Q Consensus 349 g~~l~v~~a~~~~ 361 (401)
||.|+|.|+....
T Consensus 98 GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 98 GRKVVAEVYDQER 110 (118)
T ss_dssp TEECEEEEECHHH
T ss_pred CcEEEEEEcChHh
Confidence 9999999997643
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.6e-13 Score=105.98 Aligned_cols=86 Identities=26% Similarity=0.326 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCCC-----------HHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 015763 101 ALPPNGSEVFIGGLPKDAS-----------EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~~t-----------~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~ 169 (401)
..+..+++|+|+||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3456789999999954332 5799999999999999966 443 379999999999999999999999
Q ss_pred CCccCCeEEEEEecccccccc
Q 015763 170 SKELKGKTIRCSLSETKNRLF 190 (401)
Q Consensus 170 ~~~~~g~~l~v~~~~~~~~l~ 190 (401)
+..+.|+.|+|.++.++...-
T Consensus 86 g~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp TCEETTEECEEEECCSCCCSS
T ss_pred CCEECCcEEEEEEeCCCCCcc
Confidence 999999999999998765543
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.5e-14 Score=109.72 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=61.7
Q ss_pred EccCCCCCCHHHHHHHH------------hhcCCeeEEEecCCCCCC-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEE
Q 015763 287 VKNIPDNTSTEKIKELF------------QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (401)
Q Consensus 287 v~nlp~~~t~e~l~~~f------------~~~G~i~~v~i~~~~~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (401)
+.|||..+++++|+++| ++||.|.+|.|+++..+. +|||||+|.+.++|.+|+..|||+.|+||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34555566676666555 999999999999887665 99999999999999999999999999999999
Q ss_pred EEecc
Q 015763 354 VVLAK 358 (401)
Q Consensus 354 v~~a~ 358 (401)
|.|+.
T Consensus 100 v~~sp 104 (104)
T 1jmt_A 100 AELSP 104 (104)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99974
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=6.6e-14 Score=121.50 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCCCC---------CHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015763 102 LPPNGSEVFIGGLPKDA---------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~~~---------t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~ 172 (401)
.....++|||+|||+.+ ++++|+.+|++||.|..|+++. ++|||||+|.+.++|..|+..|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34578999999999998 7999999999999999999985 48999999999999999999999999
Q ss_pred c------------CCeEEEEEeccccc
Q 015763 173 L------------KGKTIRCSLSETKN 187 (401)
Q Consensus 173 ~------------~g~~l~v~~~~~~~ 187 (401)
| .|+.|.|.|+....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998654
No 363
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=2.2e-13 Score=121.88 Aligned_cols=77 Identities=30% Similarity=0.471 Sum_probs=71.9
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccC
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (401)
...++|||+|||..+|+++|+.+|++||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 55689999999999999999999999999999999765 48999999999999999999999999999999999976
Q ss_pred C
Q 015763 360 Q 360 (401)
Q Consensus 360 ~ 360 (401)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=2.8e-13 Score=104.04 Aligned_cols=82 Identities=12% Similarity=0.205 Sum_probs=70.1
Q ss_pred cccceEEEccCCCCCC----------HHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCC
Q 015763 280 SQVKALYVKNIPDNTS----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t----------~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g 349 (401)
.++++|.|.|+-.... +++|++.|++||.|.+|.|.++. .+|||||+|.+.++|.+|+..|||+.|+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568999999953222 25889999999999999997764 47999999999999999999999999999
Q ss_pred eEEEEEeccCCCcC
Q 015763 350 QVLEVVLAKPQTDK 363 (401)
Q Consensus 350 ~~l~v~~a~~~~~~ 363 (401)
|.|+|.|+....-.
T Consensus 83 R~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 83 KMITAAYVPLPTYH 96 (114)
T ss_dssp EECEEEEECHHHHH
T ss_pred EEEEEEEEcHHHHH
Confidence 99999999875544
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2e-13 Score=103.62 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=71.1
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHhhcccCCeeEEEEeeCCCC--CCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015763 105 NGSEVFIGGL--PKDAS--------EEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKE 172 (401)
Q Consensus 105 ~~~~v~v~nl--p~~~t--------~~~l~~~f~~~g~i~~~~~~~~~~~--g~~~g~a~V~f~~~~~a~~a~~~l~~~~ 172 (401)
++++|.|.|+ |..+. .++|+..|++||.|.+|.|+++..+ ++++|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 44443 3689999999999999999988754 4689999999999999999999999999
Q ss_pred cCCeEEEEEeccc
Q 015763 173 LKGKTIRCSLSET 185 (401)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (401)
+.||.|+|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 366
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1e-12 Score=98.37 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=62.9
Q ss_pred ceEEEccCC-------CCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 283 KALYVKNIP-------DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 283 ~~l~v~nlp-------~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
++|.|.-.+ ..+++++|+.+|++||.|..|+|+. ..+|||||+|.+.++|..|+..+++ +.|++|+|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKIS 85 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEE
Confidence 456665544 4689999999999999999999983 2379999999999999999997555 679999999
Q ss_pred eccCCCc
Q 015763 356 LAKPQTD 362 (401)
Q Consensus 356 ~a~~~~~ 362 (401)
|++++..
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9987644
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.2e-13 Score=104.86 Aligned_cols=72 Identities=28% Similarity=0.443 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHHhh------------cccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 111 IGGLPKDASEEDLRDLC------------EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 111 v~nlp~~~t~~~l~~~f------------~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
+.+||+.+++++|+++| ++||.|..|.++++.. ++++|||||.|.+.++|.+|+..|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777777666 9999999999998765 8999999999999999999999999999999999
Q ss_pred EEEec
Q 015763 179 RCSLS 183 (401)
Q Consensus 179 ~v~~~ 183 (401)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=7.4e-13 Score=102.44 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHhhcccCCeeEEEEeeCCC----CCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015763 105 NGSEVFIGGLPK--DA---SEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (401)
Q Consensus 105 ~~~~v~v~nlp~--~~---t~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g 175 (401)
++++|+|+|+-. ++ -+++|+..|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 688999999942 22 3678999999999999999998864 46789999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 015763 176 KTIRCSLSET 185 (401)
Q Consensus 176 ~~l~v~~~~~ 185 (401)
|.|+|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998754
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=4e-12 Score=116.32 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=66.9
Q ss_pred cccceEEEcc--CCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeC---Ce--EE
Q 015763 280 SQVKALYVKN--IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID---GQ--VL 352 (401)
Q Consensus 280 ~~~~~l~v~n--lp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~---g~--~l 352 (401)
.++++|||+| |++.+|+++|+++|++||.|..|.+++. ||||||+|.+.++|.+|+..|||..+- |+ .|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 6678999999 5789999999999999999999999763 589999999999999999999999883 45 68
Q ss_pred EEEecc
Q 015763 353 EVVLAK 358 (401)
Q Consensus 353 ~v~~a~ 358 (401)
.|.|+.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 888884
No 370
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=88.54 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=64.6
Q ss_pred cccceEEEccCC----CCCCH----HHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeE
Q 015763 280 SQVKALYVKNIP----DNTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (401)
Q Consensus 280 ~~~~~l~v~nlp----~~~t~----e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (401)
++..||+|+.+| ..+-. .+|.+.|++||.|..|++..++ +||+|.+.++|.+|+. |||..++||.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 556788888877 23333 5789999999999999999976 8999999999999998 9999999999
Q ss_pred EEEEeccCC
Q 015763 352 LEVVLAKPQ 360 (401)
Q Consensus 352 l~v~~a~~~ 360 (401)
|+|.++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999874
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=91.50 Aligned_cols=75 Identities=20% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 106 GSEVFIGGLP-------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 106 ~~~v~v~nlp-------~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
..+|.|.-.+ ..+++++|+.+|++||.|..|.++ ++++|||||+|.+.++|.+|+..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4567777554 458999999999999999999997 46799999999999999999987444 679999
Q ss_pred EEEeccccc
Q 015763 179 RCSLSETKN 187 (401)
Q Consensus 179 ~v~~~~~~~ 187 (401)
+|.++.+..
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987653
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=4.1e-11 Score=91.95 Aligned_cols=79 Identities=20% Similarity=0.330 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCCC----------HHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015763 103 PPNGSEVFIGGLPKDAS----------EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t----------~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~ 172 (401)
+..+++|.|.|+=.... .++|+..|++||.|..|.+.++. ++||+||+|.+.++|.+|+..|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45678899999854322 34789999999999999987653 48999999999999999999999999
Q ss_pred cCCeEEEEEeccc
Q 015763 173 LKGKTIRCSLSET 185 (401)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (401)
+.||.|+|.++..
T Consensus 80 f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 80 FAGKMITAAYVPL 92 (114)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCEEEEEEEEcH
Confidence 9999999999753
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=2.9e-11 Score=110.61 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=66.2
Q ss_pred CCCCCCCeEEEcC--CCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCcc---CC
Q 015763 101 ALPPNGSEVFIGG--LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KG 175 (401)
Q Consensus 101 ~~~~~~~~v~v~n--lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~---~g 175 (401)
.....+.+|||+| |++.+|+++|+++|++||.|..|.+.. +||||||+|.+.++|++|++.|||..+ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456788999999 578999999999999999999987753 479999999999999999999999987 35
Q ss_pred e--EEEEEecc
Q 015763 176 K--TIRCSLSE 184 (401)
Q Consensus 176 ~--~l~v~~~~ 184 (401)
+ .|.|.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 56666663
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=9.6e-11 Score=89.86 Aligned_cols=76 Identities=22% Similarity=0.286 Sum_probs=69.5
Q ss_pred cccceEEEccCCCC-CCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCC-HHHHHHHHHhhc--CCeeCCeEEEEE
Q 015763 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE-RSSALKAVKDTE--KYEIDGQVLEVV 355 (401)
Q Consensus 280 ~~~~~l~v~nlp~~-~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~-~~~A~~A~~~l~--g~~i~g~~l~v~ 355 (401)
..++.|+|+||+.. ++.++|+.+|++||.|.+|.+.++.. .|||+|.+ ..+|..|+..|| +..|.|..+++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 56789999999999 99999999999999999999999874 69999999 899999999995 899999999998
Q ss_pred eccC
Q 015763 356 LAKP 359 (401)
Q Consensus 356 ~a~~ 359 (401)
....
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 7754
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.9e-10 Score=82.76 Aligned_cols=73 Identities=12% Similarity=0.251 Sum_probs=63.4
Q ss_pred cccceEEEccCCCC-----C-CH---HHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCe
Q 015763 280 SQVKALYVKNIPDN-----T-ST---EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (401)
Q Consensus 280 ~~~~~l~v~nlp~~-----~-t~---e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (401)
++..||+|..++.. + .+ .+|.+.|.+||.|..|++..++ +||+|.+.++|.+|+. |||..|+||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 56679999998743 2 32 4689999999999999999986 9999999999999999 999999999
Q ss_pred EEEEEeccC
Q 015763 351 VLEVVLAKP 359 (401)
Q Consensus 351 ~l~v~~a~~ 359 (401)
.|+|++-.+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999988654
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=5.4e-10 Score=85.69 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecC-HHHHHHHHHHhc--CCccCCeEE
Q 015763 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS-KEFAKKAIDELH--SKELKGKTI 178 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~-~~~a~~a~~~l~--~~~~~g~~l 178 (401)
-+.++.|+|+||++. ++.++|+.+|++||.|..|.+.++.. +|||+|.+ ..+|..|+..|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 357889999999999 99999999999999999999988754 59999999 899999999985 677888888
Q ss_pred EEEec
Q 015763 179 RCSLS 183 (401)
Q Consensus 179 ~v~~~ 183 (401)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87664
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=5.2e-10 Score=80.16 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC
Q 015763 104 PNGSEVFIGGLPK----DASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (401)
Q Consensus 104 ~~~~~v~v~nlp~----~~t~----~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g 175 (401)
+...||+|.-+|. ++-+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |+|..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567788888772 3333 5789999999999999998763 8999999999999997 99999999
Q ss_pred eEEEEEeccc
Q 015763 176 KTIRCSLSET 185 (401)
Q Consensus 176 ~~l~v~~~~~ 185 (401)
|.|+|+++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999999875
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=3.4e-09 Score=92.09 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHhhcCCeeEEEecCCCCC-----C-CCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCC
Q 015763 293 NTSTEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (401)
Q Consensus 293 ~~t~e~l~~~f~~~G~i~~v~i~~~~~~-----~-kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (401)
.-.+++|++.|++||.|..|.|+++..+ . +|++||+|.+.++|.+|+..|||+.|+||.|++.|+....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 3456799999999999999999855433 3 8999999999999999999999999999999999997644
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=8.2e-09 Score=75.56 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=67.2
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhc-----CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~-----G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
.++|-|-|||..+++..|+.++..+ |.|..|.+.++-.+ |+|+|.+...|-+|..+|+|..|.||+|++.=
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G----Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG----AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE----EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc----eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5799999999999999999999999 99999999999865 99999999999999999999999999999853
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=3.2e-09 Score=76.42 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=63.5
Q ss_pred CCCCCCCeEEEcCCCCC-----CCH----HHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCC
Q 015763 101 ALPPNGSEVFIGGLPKD-----ASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (401)
Q Consensus 101 ~~~~~~~~v~v~nlp~~-----~t~----~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~ 171 (401)
..-+...||+|.-++.. +-+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||. |+|.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 44567788999988743 222 4688999999999999999874 9999999999999997 9999
Q ss_pred ccCCeEEEEEecc
Q 015763 172 ELKGKTIRCSLSE 184 (401)
Q Consensus 172 ~~~g~~l~v~~~~ 184 (401)
.+.||.|+|.+-.
T Consensus 81 ~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 81 KVKGRAVKISGPS 93 (95)
T ss_dssp EETTEEEEEECCC
T ss_pred eeCCeEEEEeccC
Confidence 9999999998754
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.74 E-value=2.8e-08 Score=86.27 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCC-----CCCHHHHHHhhcccCCeeEEEEeeCCC----CCCceeEEEEEecCHHHHHHHHHHhcCCc
Q 015763 102 LPPNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (401)
Q Consensus 102 ~~~~~~~v~v~nlp~-----~~t~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~g~a~V~f~~~~~a~~a~~~l~~~~ 172 (401)
.....+.+.+.|+-. .-.+++|+..|++||.|.++.++++.. +++++|++||+|.+.++|.+|+..|||..
T Consensus 120 ~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 120 SAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp SCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 334455666665542 235668999999999999999985543 45899999999999999999999999999
Q ss_pred cCCeEEEEEeccc
Q 015763 173 LKGKTIRCSLSET 185 (401)
Q Consensus 173 ~~g~~l~v~~~~~ 185 (401)
+.||.|.|.+...
T Consensus 200 ~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 200 FAGRKVVAEVYDQ 212 (222)
T ss_dssp SSSSBCEEEECCH
T ss_pred ECCeEEEEEEcCH
Confidence 9999999999753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=4.2e-07 Score=66.59 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccc-----CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEE
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~-----g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~ 179 (401)
..++|-|-|||..++...|+.++.++ |.|..|.++.+- +-|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 999999998874 4699999999999999999999999999999
Q ss_pred EEe
Q 015763 180 CSL 182 (401)
Q Consensus 180 v~~ 182 (401)
|..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 865
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.14 E-value=1.2e-05 Score=58.87 Aligned_cols=75 Identities=20% Similarity=0.139 Sum_probs=63.2
Q ss_pred cceEEEccCCCCC-C----HHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEe
Q 015763 282 VKALYVKNIPDNT-S----TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (401)
Q Consensus 282 ~~~l~v~nlp~~~-t----~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (401)
.++|+|.||+..+ . .+.++.+|.+|+++......+.=. -..|.|.++++|.+|-..|++..|.|++|+|.|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 4789999998644 2 257899999999888776665542 489999999999999999999999999999999
Q ss_pred ccCC
Q 015763 357 AKPQ 360 (401)
Q Consensus 357 a~~~ 360 (401)
+.+.
T Consensus 81 gq~~ 84 (104)
T 1wey_A 81 AQTL 84 (104)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9854
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=3e-05 Score=56.47 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcc----c-CCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEE
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEP----I-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~----~-g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l 178 (401)
..+.+|.|.|||+.+.++-|.-+|.+ - |.|..+.... +.|+|.|.+...|++.|+. ..+.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45778999999999999999999976 2 4888888754 3699999999999999953 4788999999
Q ss_pred EEEeccc--ccccccCCCCCCCC
Q 015763 179 RCSLSET--KNRLFIGNVPKNWT 199 (401)
Q Consensus 179 ~v~~~~~--~~~l~v~~l~~~~~ 199 (401)
.|....+ ..++++.+|++.+.
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9987654 57899999988654
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=8.4e-05 Score=54.11 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=64.5
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhc-----CCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEE
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~-----G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (401)
-.++|.|.|||..++++.|.-+|++- |.|..|..... -|+|+|.+...|.+++++ ..+.|.+.+|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~------~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC------GGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT------EEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC------cEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 45799999999999999999999872 58899988662 499999999999999984 4789999999998
Q ss_pred eccCCCcC
Q 015763 356 LAKPQTDK 363 (401)
Q Consensus 356 ~a~~~~~~ 363 (401)
-..+....
T Consensus 80 P~~~~~~~ 87 (104)
T 2dhx_A 80 PAPPRAPA 87 (104)
T ss_dssp ECCCCCCC
T ss_pred cCCCCCcc
Confidence 87766554
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.82 E-value=7.1e-05 Score=53.93 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=57.5
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCC--ceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~--~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 174 (401)
++|.||+||+.+|++++.+.+..+..+....++..+.+.+ ...-|||.|.+.+++......++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4699999999999999999999998888877777654433 2345999999999999999999998774
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.69 E-value=0.00019 Score=54.15 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=61.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCC-eEEEEEecc
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-QVLEVVLAK 358 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~ 358 (401)
...+.|.|.+.|... ...|...|++||.|.+...... ..+..|+|.+..+|++||.. ||..|+| -.|-|..+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 445789999999775 6678889999999999887332 35899999999999999995 9999985 778888764
Q ss_pred C
Q 015763 359 P 359 (401)
Q Consensus 359 ~ 359 (401)
.
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.68 E-value=0.00027 Score=50.84 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=62.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC----CCeEEEEeCCHHHHHHHHHhhcCCeeCC-----eEEE
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLE 353 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g-----~~l~ 353 (401)
..|.|++||+.+|++++.+.++....+........+... -.-|||.|.+.+++..-...++|..|-+ -+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 479999999999999999999999888776665554322 3569999999999999999999988843 2345
Q ss_pred EEeccCC
Q 015763 354 VVLAKPQ 360 (401)
Q Consensus 354 v~~a~~~ 360 (401)
|.||.-+
T Consensus 82 VE~AP~q 88 (91)
T 1uw4_A 82 VEFAPFQ 88 (91)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 7777543
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=8.3e-05 Score=54.44 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEE
Q 015763 106 GSEVFIGGLPKDA-SE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (401)
Q Consensus 106 ~~~v~v~nlp~~~-t~----~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v 180 (401)
..+|+|.||+..+ .. ..++.+|..|+++....+.+.-+ -..|.|.++++|.+|...||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999999865 22 46789999999998888876643 4799999999999999999999999999999
Q ss_pred Eeccc
Q 015763 181 SLSET 185 (401)
Q Consensus 181 ~~~~~ 185 (401)
..+.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99873
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.00072 Score=48.58 Aligned_cols=58 Identities=24% Similarity=0.446 Sum_probs=47.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 015763 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (401)
Q Consensus 103 ~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~ 169 (401)
+...+.++| .+|+.+...||.++|++||.| .|+.+-+. .|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 334556777 999999999999999999954 45566553 59999999999999998764
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.08 E-value=0.00056 Score=49.47 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCC--ceeEEEEEecCHHHHHHHHHHhcCCccC
Q 015763 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (401)
Q Consensus 106 ~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~--~~g~a~V~f~~~~~a~~a~~~l~~~~~~ 174 (401)
+-+|.||.||+.+|++++.+.+..+-.+....++....+.+ .-.-|||.|.+.++........+|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45699999999999999888887765654444443333221 1235899999999999999998887764
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.04 E-value=0.002 Score=48.49 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=56.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCC-eEEEEEec
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KTIRCSLS 183 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~ 183 (401)
..+-|.|-+.|+.. ...|..+|++||.|....... ...+.+|.|.+..+|++|| ..||..+.| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 46779999999986 557888999999999887622 2458999999999999999 559999975 45566654
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.00 E-value=0.0022 Score=46.37 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=58.7
Q ss_pred ccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCC----CCeEEEEeCCHHHHHHHHHhhcCCeeCC-----eE
Q 015763 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG-----QV 351 (401)
Q Consensus 281 ~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g-----~~ 351 (401)
.+-.|.|++||+.+|++++.+.++..-.+.....+..+... -.-|||.|.+.++...-....+|..|-+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 34579999999999999998888776555444444433322 2459999999999999999999988843 24
Q ss_pred EEEEeccC
Q 015763 352 LEVVLAKP 359 (401)
Q Consensus 352 l~v~~a~~ 359 (401)
..|+||.-
T Consensus 88 a~VE~APy 95 (97)
T 2l08_A 88 AVVEFAPF 95 (97)
T ss_dssp EEEEECCC
T ss_pred eEEEecCC
Confidence 66777754
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.95 E-value=0.0011 Score=50.63 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=58.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeE-EEecCCCC---------------CCCCeEEEEeCCHHHHHHHHHhhcCCe
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKS---------------GKRDFGFIHYAERSSALKAVKDTEKYE 346 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~-v~i~~~~~---------------~~kg~afV~f~~~~~A~~A~~~l~g~~ 346 (401)
..|.|-+.|..... .|...|++||.|.. +.+.+... ....+..|+|.+..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 56888899865554 56789999999876 33322110 0135789999999999999995 9999
Q ss_pred eCCeEEEEEeccCCCc
Q 015763 347 IDGQVLEVVLAKPQTD 362 (401)
Q Consensus 347 i~g~~l~v~~a~~~~~ 362 (401)
|+|..|-|.++...+.
T Consensus 86 i~G~mIGV~Py~~~~v 101 (132)
T 3p3d_A 86 FNGVLLGVIPYTKDAV 101 (132)
T ss_dssp ETTEECEEEECCHHHH
T ss_pred eCcEEEEEEECCHHHH
Confidence 9999999998876444
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.92 E-value=0.0011 Score=47.74 Aligned_cols=53 Identities=26% Similarity=0.440 Sum_probs=44.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhc
Q 015763 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (401)
Q Consensus 108 ~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~ 169 (401)
.++| ++|+.+...||.++|++||. ..|+.+-+. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566 99999999999999999994 456666653 59999999999999998764
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0015 Score=47.02 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=44.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~ 343 (401)
..++| ++|+.+...+|.++|+.|| =..|.-+.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999998 3344444443 69999999999999999764
No 397
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.76 E-value=0.0046 Score=44.44 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=43.5
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~ 343 (401)
..++| ++|+.+...+|.++|+.||.| .|+-+.+ ..|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999843 3333334 269999999999999999763
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.99 E-value=0.0061 Score=46.53 Aligned_cols=78 Identities=9% Similarity=0.217 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEE-EeeC--------CCCC-----CceeEEEEEecCHHHHHHHHHHhcC
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMKD--------KESG-----ESKGFAFVSFRSKEFAKKAIDELHS 170 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~-~~~~--------~~~g-----~~~g~a~V~f~~~~~a~~a~~~l~~ 170 (401)
..+.|.|-+.|+..+. .|..+|++||.|..-. +.+. +.+. ....+..|+|.++.+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 4566899999887766 5777999999886521 1110 0000 12457899999999999999 5599
Q ss_pred CccCCeEEEEEecc
Q 015763 171 KELKGKTIRCSLSE 184 (401)
Q Consensus 171 ~~~~g~~l~v~~~~ 184 (401)
..+.|.-|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999877777654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.63 E-value=0.0057 Score=57.88 Aligned_cols=55 Identities=9% Similarity=0.262 Sum_probs=42.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
++|+|. .|..+++.+|.++|++||+|.++....+++ -||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 689997 799999999999999999999999987654 5999999999999877653
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.39 E-value=0.009 Score=56.52 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHH
Q 015763 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (401)
Q Consensus 105 ~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~ 166 (401)
..|+|||. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 56889998 89999999999999999999999987653 3699999999999997763
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.59 E-value=2.3 Score=40.87 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=44.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 015763 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (401)
Q Consensus 107 ~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~ 170 (401)
..++|+ +|..+...+|.++|+.||.| .|+.+.+ ..|||.|.+.+.|..+++.+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 456666 99999999999999999954 5555543 2599999999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.91 E-value=2.5 Score=40.61 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=44.7
Q ss_pred cceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhc
Q 015763 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~ 343 (401)
...++|+ +|..+...+|.+.|+.||. ..|+.+.+. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 3466666 9999999999999999994 455554443 69999999999999999875
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.25 E-value=6 Score=26.75 Aligned_cols=60 Identities=8% Similarity=0.158 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhhcC-----CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEecc
Q 015763 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (401)
Q Consensus 292 ~~~t~e~l~~~f~~~G-----~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (401)
..+..-+|..++..-+ .|-.|.|... |.||+-.. ..|..++..|++..+.|+.++|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4556677777776654 4557777443 68998874 46888999999999999999998775
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=74.14 E-value=19 Score=24.95 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=46.1
Q ss_pred cccceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 015763 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 280 ~~~~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l 342 (401)
...+-|.|-|+|..+-..++.-.....|---.+.... |-|.|+|.+.++-..|+.+|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHHH
Confidence 3456789999999999988887777777666665544 45999999999999999886
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=67.76 E-value=13 Score=24.94 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=37.8
Q ss_pred CCCHHHHHHhhcccC-----CeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcCCccCCeEEEEEecc
Q 015763 117 DASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (401)
Q Consensus 117 ~~t~~~l~~~f~~~g-----~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 184 (401)
.+.+.+|..++..-+ .|-.|.+..+ |.||+..... +..++..|++..+.|+.+.|..+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 467778887776543 4566666433 6888887654 667778889999999999887653
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=64.68 E-value=11 Score=30.01 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=40.4
Q ss_pred ceEEEccCCC-C--------CCHHHHHHHH--hhcCCeeEEEecCCCCCCCCeEEEEeCCHHHH-HHHHH
Q 015763 283 KALYVKNIPD-N--------TSTEKIKELF--QRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA-LKAVK 340 (401)
Q Consensus 283 ~~l~v~nlp~-~--------~t~e~l~~~f--~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A-~~A~~ 340 (401)
.++.|-|+|. . .+...|++.| +.|.++. |+.+.+..+.+|+|+|.|.+.-.. ..|++
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4778889886 2 3457899977 8997755 666666666689999999875443 34444
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=57.72 E-value=30 Score=24.11 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=41.3
Q ss_pred EEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhh
Q 015763 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l 342 (401)
.++..+....+.-+|++.+++ |+ .|..|.....+.+. --|||++..-.+|.....++
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~-KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE-KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC-EEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc-eEEEEEcCCCCcHHHHHHhh
Confidence 455666778999999999987 66 67777665544332 25999999888887766543
No 408
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=50.98 E-value=64 Score=22.99 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=47.5
Q ss_pred EEccCCCCCCHHHHHHHHh-hcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHhhcCCeeCCeEEEEEeccCCCc
Q 015763 286 YVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (401)
Q Consensus 286 ~v~nlp~~~t~e~l~~~f~-~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (401)
+|--++..+.-++|.+-.. .||.-.+++-.... ..|-..+.++-.+|+..|+.. -.-+.|+|-+..++..
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~E------llIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE------LVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGST 90 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEECSSS------SCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCCC
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEecce------EEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCCC
Confidence 4455677888888876654 48877777665332 688999999999999987542 3344556666555533
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.44 E-value=62 Score=25.77 Aligned_cols=55 Identities=20% Similarity=0.226 Sum_probs=37.3
Q ss_pred eEEEcCCCC-C--------CCHHHHHHhh--cccCCeeEEEEeeCCCCCCceeEEEEEecCH-HHHHHHH
Q 015763 108 EVFIGGLPK-D--------ASEEDLRDLC--EPIGDVFEVRLMKDKESGESKGFAFVSFRSK-EFAKKAI 165 (401)
Q Consensus 108 ~v~v~nlp~-~--------~t~~~l~~~f--~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~-~~a~~a~ 165 (401)
++.|-|+|. . .....|++.| +.|.++. ++.+..+ .-.+|+|.|.|.+- .....|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 366778886 2 3456899977 9998865 4444443 34789999999875 3444444
No 410
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=39.42 E-value=6.2 Score=35.99 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=9.0
Q ss_pred CCCHHHHHHHHhh
Q 015763 293 NTSTEKIKELFQR 305 (401)
Q Consensus 293 ~~t~e~l~~~f~~ 305 (401)
.+++++|+.+...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 5678888777654
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=38.78 E-value=95 Score=21.46 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=46.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcccCCeeEEEEeeCCCCCCceeEEEEEecCHHHHHHHHHHhcC
Q 015763 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (401)
Q Consensus 104 ~~~~~v~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~g~~~g~a~V~f~~~~~a~~a~~~l~~ 170 (401)
...+.|.|-|+|..+-..++.-.....|--..|..+ -|.|.+.|.+.++-..|+..|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 356789999999999888887777777765666554 45699999999999999977643
No 412
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=38.13 E-value=58 Score=22.54 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=38.9
Q ss_pred EEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHH
Q 015763 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~ 340 (401)
-++-.+....+.-+|++.+++ |+ .|..|.....+.+. --|||++....+|...+.
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~-KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-KKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc-eEEEEEECCCCcHHHHHH
Confidence 456667788999999999887 56 67777665544322 259999988777665544
No 413
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=31.67 E-value=89 Score=24.19 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=39.6
Q ss_pred EEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
.++.-+....+.-+|++.++. |+ .|..|.......+. --|||++....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~-KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN-KKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC-EEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-EEEEEEcCCCCcHHHHHHh
Confidence 445556678899999988887 55 67777665554432 2499999988777766554
No 414
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=31.22 E-value=91 Score=23.92 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=39.7
Q ss_pred EEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
-++.-+....+.-+|++.++. |+ .|..|......++. --|||++....+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT-KKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC-EEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-eEEEEEeCCCCcHHHHHHh
Confidence 455556678999999988887 55 67787665554432 2499999988777766554
No 415
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=29.52 E-value=32 Score=18.09 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=3.8
Q ss_pred CCCCCCCCCC
Q 015763 386 GGFAGTPYGS 395 (401)
Q Consensus 386 ~~~~~~~~g~ 395 (401)
||++++.+++
T Consensus 7 gG~gpgKM~~ 16 (29)
T 4fdd_B 7 GGFGPGKMDS 16 (29)
T ss_pred CCcCCccccc
Confidence 3333333333
No 416
>2lt8_A Eurocin; A/B-fold, cysteine stabilised, antimicrobial protein; NMR {Eurotium amstelodami}
Probab=27.44 E-value=9.5 Score=21.15 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCC
Q 015763 390 GTPYGSVAHDIW 401 (401)
Q Consensus 390 ~~~~g~~~~~~~ 401 (401)
|++-|+|-+++|
T Consensus 20 ggrtggycagpw 31 (42)
T 2lt8_A 20 GGRTGGYCAGPW 31 (42)
T ss_dssp TTCCEEEEECCS
T ss_pred CCCcCCcccCcc
Confidence 445566667777
No 417
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=26.68 E-value=1.3e+02 Score=21.57 Aligned_cols=74 Identities=11% Similarity=0.328 Sum_probs=42.8
Q ss_pred cceEEEccCCCCCCHHH--HHHHHh--------hcC-----CeeEEEecCCC-CC---CCCeEEEEeCCHHH---HHHHH
Q 015763 282 VKALYVKNIPDNTSTEK--IKELFQ--------RHG-----EVTKVVMPPGK-SG---KRDFGFIHYAERSS---ALKAV 339 (401)
Q Consensus 282 ~~~l~v~nlp~~~t~e~--l~~~f~--------~~G-----~i~~v~i~~~~-~~---~kg~afV~f~~~~~---A~~A~ 339 (401)
.+.|.|.++|....+.. +..+|. ..+ .|..+.-.... +. .-....|.|....+ ..+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36899999997633222 333332 222 34454332222 11 12367888877554 55666
Q ss_pred HhhcCCeeCCeEEEEE
Q 015763 340 KDTEKYEIDGQVLEVV 355 (401)
Q Consensus 340 ~~l~g~~i~g~~l~v~ 355 (401)
+.-...++.|.+|+++
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 6556788999999986
No 418
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=26.57 E-value=1.3e+02 Score=21.22 Aligned_cols=70 Identities=16% Similarity=0.075 Sum_probs=45.6
Q ss_pred hcCCCCCCCeEEEcCCCCCCCHHHHHHhhcccCC---eeEEEEeeCCCCCCceeEEEEEecC--HHHHHHHHHHhcC
Q 015763 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRS--KEFAKKAIDELHS 170 (401)
Q Consensus 99 ~~~~~~~~~~v~v~nlp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~g~~~g~a~V~f~~--~~~a~~a~~~l~~ 170 (401)
+...++.++.|.|.-....+.+.-|..+.+.||- |....+-. ..+.+-|.-+|.+.- .+...+|+..|..
T Consensus 13 L~~~~~~~~lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~--i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 13 LEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKN--TKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp TCSCCTTCEEEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEE--ETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred hhccCCCCEEEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEE--eCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3444445556777755566777778888888883 33333322 225667888999984 6777888877754
No 419
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=23.28 E-value=16 Score=36.03 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=0.0
Q ss_pred cccCcccccccccCCcccccccCCCCcccCCC---CCCCCCCCccccccccccCcccchhhhccCCCC
Q 015763 9 DRVDLEEDNYMEEMDDDVEEQVEEDPEEEGGD---GNFEENDDDEEYDHSKAGASEKDQSAEANRNDD 73 (401)
Q Consensus 9 e~~~~~~~~~~~e~~~~~e~~~~~~~~ee~~~---~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (401)
|..+++.+++.-++.+++..+.++++++++.+ +...+++++++.++.....++.+.++..+.++.
T Consensus 271 edldDd~~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~d~~~~~~dd~~~de~~d~~~e 338 (649)
T 3tj1_A 271 DELDDDVDDDDLEEVDLEDDDDLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGMDGTEE 338 (649)
T ss_dssp HHHC----------------------------------------------------------------
T ss_pred hhccchhhhhhhhhhcccccccccccccchhhccccccccccccccccccccccccccccccccchhh
No 420
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=23.12 E-value=99 Score=24.02 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=38.6
Q ss_pred EEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
.++.-+....+.-+|++.++. |+ .|..|.......+. --|||++....+|......
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGK-KKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc-eEEEEEcCCCCcHHHHHHh
Confidence 345556667888899988877 55 67777665544332 2499999988777766543
No 421
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.88 E-value=1.5e+02 Score=23.09 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=39.4
Q ss_pred EEEccCCCCCCHHHHHHHHhh-cC-CeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 285 l~v~nlp~~~t~e~l~~~f~~-~G-~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
.++--+....+.-+|++.++. || .|..|....-.++. --|||++....+|...+..
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~-KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE-KKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSC-EEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 455566778999999999887 56 67788665554432 2499999887776655543
No 422
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.20 E-value=1.6e+02 Score=18.71 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=41.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHhhcCCeeEEEecCCCCCCCCeEEEEeCCHHHHHHHHHh
Q 015763 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (401)
Q Consensus 283 ~~l~v~nlp~~~t~e~l~~~f~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~A~~~ 341 (401)
.++.|.++...-=...|...+.+ ..|..+.+.... +.+.|.|.+.+....++..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~----~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE----AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE----EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC----CEEEEEECCHHHHHHHHHH
Confidence 57889999877777889999999 889888886554 4688888855566677765
No 423
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=21.52 E-value=20 Score=31.99 Aligned_cols=20 Identities=20% Similarity=0.439 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 015763 381 PHAGYGGFAGTPYGSVAHDIW 401 (401)
Q Consensus 381 ~~~~~~~~~~~~~g~~~~~~~ 401 (401)
|+|+..+++..+||+||.+ |
T Consensus 299 ~~~~~~~~~~~~~~~~~~~-~ 318 (318)
T 1twf_C 299 PYSNASQMGNTGSGGYDNA-W 318 (318)
T ss_dssp ---------------------
T ss_pred ccCCCCCCCCcccCCcCCC-C
Confidence 3333344455578888766 8
Done!