Query 015764
Match_columns 401
No_of_seqs 126 out of 166
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:21:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01959 DHQS: 3-dehydroquinat 100.0 8E-135 2E-139 999.4 39.3 340 51-401 1-354 (354)
2 PRK02290 3-dehydroquinate synt 100.0 2E-134 4E-139 993.7 39.6 336 50-401 1-344 (344)
3 COG1465 Predicted alternative 100.0 4E-130 9E-135 948.4 35.4 342 49-401 1-376 (376)
4 PF01079 Hint: Hint module; I 97.2 0.0022 4.8E-08 61.1 9.4 98 279-382 14-115 (217)
5 smart00306 HintN Hint (Hedgeho 97.2 0.002 4.2E-08 51.1 7.6 90 282-382 7-99 (100)
6 cd00081 Hint Hedgehog/Intein d 93.6 0.41 9E-06 40.0 7.9 89 283-382 7-99 (136)
7 cd00331 IGPS Indole-3-glycerol 91.3 2.3 5E-05 39.2 10.5 112 58-190 82-202 (217)
8 cd00452 KDPG_aldolase KDPG and 90.4 1.6 3.5E-05 39.9 8.5 111 59-193 18-128 (190)
9 TIGR03239 GarL 2-dehydro-3-deo 89.5 1.4 3E-05 42.8 7.6 90 109-203 12-106 (249)
10 PRK10128 2-keto-3-deoxy-L-rham 89.5 1.3 2.9E-05 43.6 7.6 92 109-203 18-112 (267)
11 PRK10558 alpha-dehydro-beta-de 89.0 1.6 3.6E-05 42.5 7.7 90 109-203 19-113 (256)
12 TIGR02311 HpaI 2,4-dihydroxyhe 88.7 1.7 3.6E-05 42.1 7.6 91 110-204 13-107 (249)
13 PRK05826 pyruvate kinase; Prov 88.6 1.1 2.4E-05 47.5 6.7 134 58-204 174-334 (465)
14 PRK10558 alpha-dehydro-beta-de 87.6 1.8 3.8E-05 42.2 7.0 38 157-194 143-181 (256)
15 PTZ00300 pyruvate kinase; Prov 86.7 2.2 4.8E-05 45.2 7.6 209 57-310 147-381 (454)
16 PRK00278 trpC indole-3-glycero 86.4 7.9 0.00017 37.7 10.7 116 59-195 122-251 (260)
17 cd04729 NanE N-acetylmannosami 85.8 2.9 6.3E-05 38.8 7.2 109 60-191 82-208 (219)
18 TIGR00262 trpA tryptophan synt 85.3 5.1 0.00011 39.0 8.8 116 60-191 105-229 (256)
19 PF00224 PK: Pyruvate kinase, 84.5 1 2.2E-05 45.6 3.8 133 58-203 177-335 (348)
20 PF01729 QRPTase_C: Quinolinat 84.3 2.9 6.4E-05 38.6 6.4 42 160-204 81-122 (169)
21 PF03328 HpcH_HpaI: HpcH/HpaI 84.3 5.1 0.00011 37.3 8.0 92 111-205 2-108 (221)
22 PRK10128 2-keto-3-deoxy-L-rham 84.0 3.3 7.2E-05 40.9 7.0 131 59-192 79-240 (267)
23 PF07591 PT-HINT: Pretoxin HIN 83.3 0.66 1.4E-05 40.8 1.7 83 284-382 2-86 (130)
24 PRK05458 guanosine 5'-monophos 82.7 5.8 0.00013 40.4 8.3 116 56-189 47-168 (326)
25 PF14890 Intein_splicing: Inte 82.5 16 0.00035 35.9 11.1 86 282-382 2-92 (323)
26 TIGR03239 GarL 2-dehydro-3-deo 82.5 2.5 5.4E-05 41.1 5.4 131 58-191 72-232 (249)
27 PTZ00066 pyruvate kinase; Prov 82.4 4.8 0.0001 43.5 7.9 208 58-311 210-445 (513)
28 PRK11479 hypothetical protein; 82.1 0.8 1.7E-05 45.8 1.9 49 352-400 44-105 (274)
29 PRK05848 nicotinate-nucleotide 82.0 2.7 5.9E-05 41.7 5.5 52 149-203 169-223 (273)
30 PLN02591 tryptophan synthase 81.8 5.5 0.00012 39.0 7.5 117 59-191 95-220 (250)
31 CHL00200 trpA tryptophan synth 81.6 4.9 0.00011 39.5 7.1 117 59-191 108-233 (263)
32 PRK01130 N-acetylmannosamine-6 81.3 7.4 0.00016 36.1 7.9 110 59-191 77-204 (221)
33 PF02662 FlpD: Methyl-viologen 81.3 2 4.3E-05 37.7 3.8 50 169-218 39-101 (124)
34 cd06220 DHOD_e_trans_like2 FAD 80.6 8.1 0.00018 35.9 7.9 50 278-334 49-98 (233)
35 TIGR01370 cysRS possible cyste 80.4 15 0.00032 37.4 10.2 135 39-193 33-171 (315)
36 PRK08345 cytochrome-c3 hydroge 80.1 9.1 0.0002 37.2 8.3 98 216-332 6-116 (289)
37 PRK05826 pyruvate kinase; Prov 79.2 15 0.00032 39.3 10.1 38 168-205 172-210 (465)
38 cd04732 HisA HisA. Phosphorib 78.8 29 0.00062 32.1 10.8 131 52-191 75-221 (234)
39 TIGR01306 GMP_reduct_2 guanosi 78.4 9.7 0.00021 38.8 8.2 114 57-189 45-165 (321)
40 PF00970 FAD_binding_6: Oxidor 77.5 5.3 0.00011 32.0 4.9 88 217-312 1-97 (99)
41 PRK01130 N-acetylmannosamine-6 76.8 32 0.00069 31.9 10.6 115 60-189 26-146 (221)
42 PRK10838 spr outer membrane li 76.7 1.7 3.7E-05 41.1 2.2 31 365-395 121-151 (190)
43 PRK11840 bifunctional sulfur c 76.4 12 0.00026 38.5 8.2 101 58-197 182-291 (326)
44 PF03060 NMO: Nitronate monoox 76.2 2.7 6E-05 41.9 3.6 51 134-191 115-165 (330)
45 TIGR03151 enACPred_II putative 76.1 7 0.00015 39.0 6.4 112 58-190 23-137 (307)
46 PLN02762 pyruvate kinase compl 75.6 9.9 0.00022 41.1 7.7 134 58-204 204-365 (509)
47 PRK06106 nicotinate-nucleotide 75.4 5.3 0.00011 40.0 5.3 42 160-204 195-236 (281)
48 PRK05713 hypothetical protein; 75.3 22 0.00048 34.8 9.5 44 286-332 156-200 (312)
49 PRK13922 rod shape-determining 74.9 38 0.00082 32.7 10.9 118 195-321 101-240 (276)
50 PRK06559 nicotinate-nucleotide 74.6 6.2 0.00013 39.8 5.6 42 159-203 197-238 (290)
51 PLN02623 pyruvate kinase 74.5 9.2 0.0002 42.1 7.2 135 58-205 279-439 (581)
52 cd04730 NPD_like 2-Nitropropan 74.2 19 0.00042 33.1 8.4 110 58-191 68-187 (236)
53 PF13653 GDPD_2: Glycerophosph 74.0 5.4 0.00012 27.7 3.5 26 52-77 1-27 (30)
54 COG1370 Prefoldin, molecular c 73.9 2.8 6.1E-05 39.0 2.8 93 218-328 40-140 (155)
55 TIGR02311 HpaI 2,4-dihydroxyhe 73.8 31 0.00066 33.5 9.9 92 51-181 14-108 (249)
56 PF10844 DUF2577: Protein of u 73.7 10 0.00022 32.2 5.8 90 207-320 11-100 (100)
57 PRK08385 nicotinate-nucleotide 72.3 7.1 0.00015 39.0 5.4 55 147-204 168-224 (278)
58 PRK07896 nicotinate-nucleotide 71.9 8.2 0.00018 38.8 5.7 54 148-204 186-241 (289)
59 PF13403 Hint_2: Hint domain 71.1 11 0.00023 34.0 5.7 90 282-380 7-113 (147)
60 TIGR01064 pyruv_kin pyruvate k 70.8 9.8 0.00021 40.4 6.3 135 58-205 172-333 (473)
61 cd00331 IGPS Indole-3-glycerol 70.7 12 0.00027 34.5 6.2 112 60-192 34-151 (217)
62 PRK06543 nicotinate-nucleotide 70.7 7.9 0.00017 38.8 5.3 42 160-204 194-235 (281)
63 PF00072 Response_reg: Respons 70.5 15 0.00032 28.7 5.9 80 116-198 28-109 (112)
64 TIGR00007 phosphoribosylformim 70.1 54 0.0012 30.4 10.4 125 58-191 82-220 (230)
65 PRK08221 anaerobic sulfite red 70.0 27 0.00059 33.5 8.6 58 271-332 49-109 (263)
66 PRK06096 molybdenum transport 69.9 8.7 0.00019 38.5 5.4 43 159-204 189-231 (284)
67 PRK06978 nicotinate-nucleotide 69.4 9.5 0.00021 38.6 5.5 41 160-203 206-246 (294)
68 PRK06739 pyruvate kinase; Vali 69.1 15 0.00033 37.9 7.1 134 58-204 166-326 (352)
69 TIGR02219 phage_NlpC_fam putat 68.9 4 8.7E-05 35.8 2.5 31 365-395 69-101 (134)
70 PLN02461 Probable pyruvate kin 68.4 14 0.00031 40.0 6.9 207 58-309 194-427 (511)
71 COG3364 Zn-ribbon containing p 67.9 5.3 0.00011 35.3 3.0 36 349-390 61-96 (112)
72 PRK00054 dihydroorotate dehydr 67.9 6.3 0.00014 37.1 3.8 61 269-334 49-112 (250)
73 PRK09140 2-dehydro-3-deoxy-6-p 66.5 47 0.001 31.4 9.3 122 59-203 24-148 (206)
74 COG3836 HpcH 2,4-dihydroxyhept 66.5 15 0.00032 36.8 6.0 107 53-194 72-180 (255)
75 PRK10926 ferredoxin-NADP reduc 66.2 56 0.0012 31.0 9.8 45 285-333 69-115 (248)
76 PRK00043 thiE thiamine-phospha 66.2 94 0.002 28.0 10.9 113 61-194 72-198 (212)
77 KOG0538 Glycolate oxidase [Ene 66.0 3.1 6.7E-05 42.9 1.4 113 59-191 136-253 (363)
78 cd00405 PRAI Phosphoribosylant 65.5 71 0.0015 29.3 10.0 113 59-193 8-131 (203)
79 cd05829 Sortase_E Sortase E (S 65.0 8.5 0.00018 34.2 3.8 33 289-321 65-97 (144)
80 PRK00278 trpC indole-3-glycero 64.9 21 0.00045 34.8 6.8 119 53-192 64-190 (260)
81 cd06217 FNR_iron_sulfur_bindin 64.8 43 0.00093 30.5 8.5 58 270-332 50-115 (235)
82 TIGR01334 modD putative molybd 64.7 13 0.00028 37.2 5.4 54 148-204 175-230 (277)
83 PRK13289 bifunctional nitric o 64.7 28 0.00061 34.9 7.8 105 213-332 152-269 (399)
84 PRK14725 pyruvate kinase; Prov 64.6 19 0.00041 39.9 7.0 187 158-385 139-347 (608)
85 cd00288 Pyruvate_Kinase Pyruva 63.9 17 0.00038 38.9 6.5 134 58-204 175-334 (480)
86 PRK07428 nicotinate-nucleotide 63.8 15 0.00032 36.9 5.7 42 159-203 196-237 (288)
87 PTZ00314 inosine-5'-monophosph 63.6 20 0.00043 38.3 6.9 119 58-191 241-375 (495)
88 cd06196 FNR_like_1 Ferredoxin 63.3 11 0.00023 34.2 4.3 54 270-332 47-107 (218)
89 PF11247 DUF2675: Protein of u 63.3 4.3 9.4E-05 35.3 1.6 52 168-223 43-97 (98)
90 PRK13585 1-(5-phosphoribosyl)- 62.8 30 0.00065 32.3 7.2 115 58-191 33-171 (241)
91 TIGR03224 benzo_boxA benzoyl-C 62.8 37 0.00081 35.1 8.5 169 140-332 73-275 (411)
92 COG2197 CitB Response regulato 62.2 57 0.0012 30.5 8.9 84 115-199 30-113 (211)
93 cd00564 TMP_TenI Thiamine mono 61.1 39 0.00085 29.5 7.2 108 60-189 15-122 (196)
94 PRK13125 trpA tryptophan synth 60.7 22 0.00048 33.9 6.1 115 58-191 89-216 (244)
95 cd00381 IMPDH IMPDH: The catal 60.7 22 0.00047 35.8 6.2 118 56-191 92-228 (325)
96 PF02581 TMP-TENI: Thiamine mo 60.6 42 0.0009 30.4 7.5 108 59-191 14-124 (180)
97 PRK06222 ferredoxin-NADP(+) re 60.4 8.5 0.00019 37.2 3.2 57 270-332 44-106 (281)
98 TIGR02911 sulfite_red_B sulfit 60.2 12 0.00027 35.7 4.3 59 270-332 46-107 (261)
99 TIGR01302 IMP_dehydrog inosine 59.8 33 0.00072 36.0 7.6 118 58-190 224-357 (450)
100 TIGR03151 enACPred_II putative 59.8 36 0.00078 34.0 7.6 109 59-191 76-192 (307)
101 PRK09016 quinolinate phosphori 59.5 20 0.00042 36.4 5.6 41 160-203 209-249 (296)
102 TIGR01163 rpe ribulose-phospha 59.4 26 0.00057 31.5 6.0 22 58-79 67-88 (210)
103 PF02254 TrkA_N: TrkA-N domain 59.4 62 0.0013 26.3 7.7 67 113-188 45-115 (116)
104 cd06192 DHOD_e_trans_like FAD/ 59.2 9.2 0.0002 35.6 3.1 59 269-332 42-105 (243)
105 cd04728 ThiG Thiazole synthase 58.7 32 0.00069 34.3 6.8 29 165-196 183-216 (248)
106 PRK00208 thiG thiazole synthas 58.5 33 0.00072 34.2 6.9 31 164-197 182-217 (250)
107 TIGR03128 RuMP_HxlA 3-hexulose 58.5 1.5E+02 0.0031 27.0 10.7 18 62-79 68-85 (206)
108 PLN02765 pyruvate kinase 58.1 37 0.0008 37.1 7.7 205 58-307 207-438 (526)
109 PRK10840 transcriptional regul 56.9 81 0.0017 28.3 8.7 81 117-199 35-119 (216)
110 PRK14898 DNA-directed RNA poly 56.8 48 0.001 38.0 8.7 79 291-382 115-196 (858)
111 PLN02716 nicotinate-nucleotide 56.7 23 0.00051 36.1 5.7 41 160-203 204-259 (308)
112 cd00322 FNR_like Ferredoxin re 56.5 14 0.00031 32.9 3.8 50 278-332 54-105 (223)
113 PF10844 DUF2577: Protein of u 56.5 8.7 0.00019 32.5 2.3 19 372-390 76-94 (100)
114 TIGR01182 eda Entner-Doudoroff 56.4 62 0.0013 31.0 8.2 122 59-204 22-147 (204)
115 PRK13957 indole-3-glycerol-pho 56.4 14 0.0003 36.5 3.9 164 59-251 63-232 (247)
116 cd04723 HisA_HisF Phosphoribos 56.0 1.2E+02 0.0026 28.9 10.1 125 52-190 80-219 (233)
117 TIGR01949 AroFGH_arch predicte 55.9 46 0.00099 32.0 7.3 131 62-204 95-248 (258)
118 cd06211 phenol_2-monooxygenase 55.7 1.3E+02 0.0028 27.9 10.0 99 216-333 7-118 (238)
119 PF15057 DUF4537: Domain of un 55.0 67 0.0015 28.3 7.6 73 300-391 1-74 (124)
120 cd04726 KGPDC_HPS 3-Keto-L-gul 54.1 65 0.0014 29.0 7.6 78 109-190 54-134 (202)
121 PRK11872 antC anthranilate dio 54.1 15 0.00033 36.5 3.9 49 278-332 166-217 (340)
122 cd08570 GDPD_YPL206cp_fungi Gl 53.7 17 0.00037 33.9 3.9 30 48-77 202-232 (234)
123 cd06201 SiR_like2 Cytochrome p 53.5 1.1E+02 0.0024 29.9 9.6 109 212-332 42-163 (289)
124 PRK02083 imidazole glycerol ph 53.3 93 0.002 29.6 8.9 113 58-190 31-174 (253)
125 cd04743 NPD_PKS 2-Nitropropane 53.0 39 0.00084 34.6 6.6 114 132-263 82-212 (320)
126 PF01472 PUA: PUA domain; Int 52.7 22 0.00048 28.1 3.9 39 284-324 18-56 (74)
127 TIGR00432 arcsn_tRNA_tgt tRNA- 52.6 11 0.00024 40.9 2.9 32 295-328 495-526 (540)
128 PLN02334 ribulose-phosphate 3- 52.5 60 0.0013 30.6 7.4 125 60-203 78-222 (229)
129 PRK13958 N-(5'-phosphoribosyl) 52.4 1.7E+02 0.0036 27.7 10.3 113 59-191 10-131 (207)
130 PF00290 Trp_syntA: Tryptophan 52.4 31 0.00066 34.2 5.6 116 59-191 104-228 (259)
131 PRK13802 bifunctional indole-3 52.2 1.2E+02 0.0026 34.3 10.6 118 59-201 122-258 (695)
132 PRK09140 2-dehydro-3-deoxy-6-p 52.0 24 0.00052 33.3 4.7 85 113-200 14-101 (206)
133 cd06207 CyPoR_like NADPH cytoc 51.8 15 0.00034 37.1 3.6 63 265-332 159-238 (382)
134 PF05203 Hom_end_hint: Hom_end 51.5 16 0.00034 35.2 3.4 47 283-334 7-54 (215)
135 cd06213 oxygenase_e_transfer_s 51.4 1.7E+02 0.0036 26.9 9.9 39 288-332 69-108 (227)
136 cd04731 HisF The cyclase subun 51.3 1.4E+02 0.0031 28.0 9.7 112 59-192 29-172 (243)
137 cd06198 FNR_like_3 NAD(P) bind 51.3 18 0.00039 32.9 3.6 58 269-332 40-103 (216)
138 PRK15452 putative protease; Pr 51.1 1.3E+02 0.0029 31.9 10.4 136 52-201 5-154 (443)
139 PRK08649 inosine 5-monophospha 50.4 34 0.00074 35.4 5.8 51 131-189 153-215 (368)
140 PF03328 HpcH_HpaI: HpcH/HpaI 50.4 1.4E+02 0.003 27.8 9.3 131 54-193 5-154 (221)
141 TIGR03784 marine_sortase sorta 50.4 21 0.00045 33.3 3.9 32 290-321 102-133 (174)
142 PTZ00319 NADH-cytochrome B5 re 50.0 1.4E+02 0.0031 29.3 9.9 94 211-312 29-144 (300)
143 PRK10669 putative cation:proto 49.9 79 0.0017 33.7 8.6 104 60-191 430-537 (558)
144 TIGR01445 intein_Nterm intein 49.5 48 0.001 25.6 5.3 60 282-354 5-73 (81)
145 cd04724 Tryptophan_synthase_al 49.5 79 0.0017 30.3 7.8 113 60-191 94-217 (242)
146 cd06221 sulfite_reductase_like 49.5 26 0.00057 33.2 4.5 51 278-332 56-106 (253)
147 cd02812 PcrB_like PcrB_like pr 49.0 1.3E+02 0.0027 29.4 9.1 128 53-191 57-206 (219)
148 PRK09206 pyruvate kinase; Prov 48.3 55 0.0012 35.2 7.1 205 58-311 173-404 (470)
149 PRK08114 cystathionine beta-ly 48.1 12 0.00027 38.7 2.3 125 60-189 67-207 (395)
150 cd06212 monooxygenase_like The 47.8 1.5E+02 0.0032 27.2 9.0 97 217-332 2-111 (232)
151 cd06208 CYPOR_like_FNR These f 47.4 19 0.00042 34.8 3.4 41 288-332 103-143 (286)
152 PRK09427 bifunctional indole-3 47.3 67 0.0014 34.3 7.5 79 116-201 218-303 (454)
153 TIGR01588 citE citrate lyase, 47.2 1.3E+02 0.0028 29.7 9.1 86 117-204 11-108 (288)
154 cd04722 TIM_phosphate_binding 47.2 1.1E+02 0.0023 26.1 7.6 17 64-80 78-94 (200)
155 cd08564 GDPD_GsGDE_like Glycer 47.1 26 0.00056 33.5 4.1 31 48-78 221-256 (265)
156 TIGR00078 nadC nicotinate-nucl 46.8 54 0.0012 32.4 6.3 42 159-203 178-219 (265)
157 PRK04302 triosephosphate isome 46.7 1.5E+02 0.0032 27.9 9.0 110 63-190 78-203 (223)
158 cd08561 GDPD_cytoplasmic_ScUgp 46.6 30 0.00066 32.5 4.4 31 48-78 210-241 (249)
159 cd06189 flavin_oxioreductase N 46.4 1.4E+02 0.003 27.4 8.6 58 270-332 41-106 (224)
160 PRK05742 nicotinate-nucleotide 46.3 45 0.00098 33.3 5.8 42 159-203 189-230 (277)
161 cd08562 GDPD_EcUgpQ_like Glyce 46.2 26 0.00057 32.1 3.9 30 48-77 197-227 (229)
162 PRK06354 pyruvate kinase; Prov 46.1 61 0.0013 35.8 7.2 134 58-204 179-339 (590)
163 cd06218 DHOD_e_trans FAD/NAD b 46.0 29 0.00062 32.8 4.2 59 270-333 44-107 (246)
164 cd08565 GDPD_pAtGDE_like Glyce 45.4 26 0.00057 33.1 3.9 30 50-79 201-231 (235)
165 cd04726 KGPDC_HPS 3-Keto-L-gul 45.4 1.6E+02 0.0036 26.4 8.8 112 60-190 67-187 (202)
166 PRK09521 exosome complex RNA-b 45.1 1.5E+02 0.0033 27.4 8.7 109 284-394 7-140 (189)
167 cd08575 GDPD_GDE4_like Glycero 45.1 25 0.00055 33.8 3.7 31 49-79 230-261 (264)
168 cd06209 BenDO_FAD_NAD Benzoate 45.0 32 0.00069 31.5 4.2 50 278-333 59-111 (228)
169 PRK06843 inosine 5-monophospha 44.7 42 0.00091 35.4 5.5 68 119-189 151-222 (404)
170 PLN02274 inosine-5'-monophosph 44.7 52 0.0011 35.4 6.3 124 53-191 243-382 (505)
171 COG4697 Uncharacterized protei 44.6 32 0.00068 35.3 4.4 71 219-289 177-279 (319)
172 PRK13111 trpA tryptophan synth 44.3 97 0.0021 30.5 7.6 116 59-191 106-230 (258)
173 PRK13585 1-(5-phosphoribosyl)- 44.3 1.5E+02 0.0032 27.8 8.6 106 92-201 5-120 (241)
174 TIGR01859 fruc_bis_ald_ fructo 44.0 55 0.0012 32.5 6.0 150 53-203 77-245 (282)
175 PRK10684 HCP oxidoreductase, N 44.0 25 0.00055 34.7 3.6 58 270-332 54-119 (332)
176 PRK05718 keto-hydroxyglutarate 43.9 1.3E+02 0.0028 28.9 8.2 121 59-203 29-153 (212)
177 cd06184 flavohem_like_fad_nad_ 43.9 27 0.00059 32.3 3.7 60 269-333 56-122 (247)
178 cd00958 DhnA Class I fructose- 43.9 96 0.0021 29.0 7.3 73 118-195 140-225 (235)
179 PRK09958 DNA-binding transcrip 43.8 1.6E+02 0.0035 25.2 8.2 69 132-202 45-115 (204)
180 cd01572 QPRTase Quinolinate ph 43.6 63 0.0014 31.9 6.3 42 159-203 182-223 (268)
181 PRK07455 keto-hydroxyglutarate 43.5 1.5E+02 0.0033 27.5 8.4 118 59-203 26-150 (187)
182 PF14382 ECR1_N: Exosome compl 43.5 17 0.00037 26.4 1.8 38 284-323 1-38 (39)
183 PRK06567 putative bifunctional 43.3 88 0.0019 37.0 8.2 91 215-314 790-889 (1028)
184 COG0135 TrpF Phosphoribosylant 43.3 1.7E+02 0.0036 28.4 8.9 138 59-202 11-204 (208)
185 TIGR03128 RuMP_HxlA 3-hexulose 43.1 1.6E+02 0.0034 26.8 8.4 90 111-203 55-156 (206)
186 cd04729 NanE N-acetylmannosami 43.1 2.7E+02 0.0058 25.9 10.1 116 60-189 30-150 (219)
187 PRK09454 ugpQ cytoplasmic glyc 42.5 31 0.00067 32.8 3.8 32 48-79 207-239 (249)
188 cd06216 FNR_iron_sulfur_bindin 42.4 1.6E+02 0.0035 27.2 8.5 101 214-332 16-130 (243)
189 PRK05802 hypothetical protein; 42.1 18 0.0004 36.1 2.4 86 215-312 64-160 (320)
190 TIGR01305 GMP_reduct_1 guanosi 42.1 28 0.00061 36.2 3.7 67 119-189 105-178 (343)
191 cd02809 alpha_hydroxyacid_oxid 42.0 1.1E+02 0.0025 30.0 7.8 72 117-191 180-258 (299)
192 cd08583 PI-PLCc_GDPD_SF_unchar 41.9 32 0.0007 32.2 3.8 31 48-78 203-234 (237)
193 PRK08051 fre FMN reductase; Va 41.9 2E+02 0.0044 26.7 9.0 96 217-332 4-110 (232)
194 PRK00748 1-(5-phosphoribosyl)- 41.8 1.4E+02 0.003 27.6 7.9 22 58-79 84-105 (233)
195 PLN02274 inosine-5'-monophosph 41.6 41 0.00089 36.2 5.0 68 119-189 246-317 (505)
196 cd08582 GDPD_like_2 Glyceropho 41.4 35 0.00076 31.7 4.0 31 48-78 199-230 (233)
197 cd04732 HisA HisA. Phosphorib 41.1 1.6E+02 0.0035 27.1 8.3 106 93-203 3-116 (234)
198 cd08601 GDPD_SaGlpQ_like Glyce 40.9 43 0.00094 31.6 4.5 31 48-78 216-247 (256)
199 PRK06806 fructose-bisphosphate 40.8 41 0.00089 33.5 4.5 137 53-192 77-233 (281)
200 PF14623 Vint: Hint-domain 40.8 46 0.00099 31.3 4.5 72 281-354 6-103 (162)
201 PRK14024 phosphoribosyl isomer 40.8 2.7E+02 0.0059 26.6 9.9 125 58-188 85-221 (241)
202 PRK02083 imidazole glycerol ph 40.5 1.7E+02 0.0037 27.8 8.5 104 93-203 7-120 (253)
203 cd06187 O2ase_reductase_like T 40.5 38 0.00082 30.7 4.0 49 278-332 54-106 (224)
204 PRK10643 DNA-binding transcrip 40.4 1.3E+02 0.0028 26.0 7.1 67 132-200 44-112 (222)
205 cd08563 GDPD_TtGDE_like Glycer 40.4 35 0.00076 31.7 3.8 30 48-77 198-228 (230)
206 cd08581 GDPD_like_1 Glyceropho 40.2 38 0.00082 32.0 4.0 30 48-77 197-227 (229)
207 PF06032 DUF917: Protein of un 40.1 31 0.00068 35.4 3.7 42 349-395 293-348 (353)
208 cd08609 GDPD_GDE3 Glycerophosp 39.9 38 0.00082 34.2 4.2 37 49-87 244-281 (315)
209 PRK04163 exosome complex RNA-b 39.8 2.3E+02 0.0049 27.4 9.3 91 285-385 11-124 (235)
210 cd06195 FNR1 Ferredoxin-NADP+ 39.6 35 0.00075 31.6 3.6 51 278-333 56-110 (241)
211 COG1465 Predicted alternative 39.3 25 0.00055 36.4 2.8 78 292-383 205-291 (376)
212 PF00218 IGPS: Indole-3-glycer 39.2 2.3E+02 0.0051 28.1 9.4 111 59-190 120-239 (254)
213 cd08610 GDPD_GDE6 Glycerophosp 39.2 42 0.00091 33.9 4.4 38 48-87 243-281 (316)
214 TIGR00735 hisF imidazoleglycer 39.0 2.5E+02 0.0054 26.9 9.4 125 58-190 84-230 (254)
215 TIGR00693 thiE thiamine-phosph 38.9 1.5E+02 0.0032 26.7 7.5 104 60-188 16-122 (196)
216 cd01568 QPRTase_NadC Quinolina 38.6 83 0.0018 30.9 6.2 42 159-203 181-222 (269)
217 PRK03659 glutathione-regulated 38.5 1.8E+02 0.0039 31.7 9.2 102 60-189 413-518 (601)
218 PRK10336 DNA-binding transcrip 38.3 1.4E+02 0.0031 25.7 7.1 68 132-201 44-113 (219)
219 cd06215 FNR_iron_sulfur_bindin 38.2 38 0.00082 30.8 3.6 50 278-332 59-111 (231)
220 TIGR01768 GGGP-family geranylg 38.2 1E+02 0.0022 30.2 6.6 71 118-191 132-210 (223)
221 PRK01033 imidazole glycerol ph 38.1 3.3E+02 0.0071 26.4 10.1 120 59-190 85-227 (258)
222 cd08612 GDPD_GDE4 Glycerophosp 38.1 46 0.00099 32.7 4.4 31 49-79 260-291 (300)
223 PHA00440 host protein H-NS-int 38.1 19 0.00042 31.4 1.5 55 168-223 43-97 (98)
224 PRK01222 N-(5'-phosphoribosyl) 37.6 3.6E+02 0.0078 25.5 11.6 86 108-202 100-204 (210)
225 cd00429 RPE Ribulose-5-phospha 37.3 90 0.0019 28.0 5.8 113 60-188 70-193 (211)
226 cd06188 NADH_quinone_reductase 37.3 42 0.00092 32.2 3.9 40 287-332 118-158 (283)
227 PRK06552 keto-hydroxyglutarate 36.9 2.4E+02 0.0052 27.0 8.9 123 59-203 27-153 (213)
228 COG0648 Nfo Endonuclease IV [D 36.7 16 0.00035 36.8 1.0 18 231-248 171-188 (280)
229 TIGR01919 hisA-trpF 1-(5-phosp 36.7 1.6E+02 0.0035 28.5 7.8 129 58-190 84-226 (243)
230 cd08564 GDPD_GsGDE_like Glycer 36.6 62 0.0013 31.0 4.9 45 148-197 212-261 (265)
231 PRK09483 response regulator; P 36.6 2.2E+02 0.0047 24.7 7.9 81 117-200 33-115 (217)
232 cd06210 MMO_FAD_NAD_binding Me 36.5 1.8E+02 0.0039 26.6 7.8 59 269-332 50-116 (236)
233 PRK08883 ribulose-phosphate 3- 36.5 89 0.0019 29.9 5.9 127 60-203 71-215 (220)
234 cd06183 cyt_b5_reduct_like Cyt 36.2 2.1E+02 0.0046 25.9 8.1 50 278-332 60-112 (234)
235 cd06200 SiR_like1 Cytochrome p 36.1 50 0.0011 31.2 4.1 37 290-332 79-117 (245)
236 TIGR01941 nqrF NADH:ubiquinone 36.0 46 0.00099 34.1 4.1 41 286-332 237-278 (405)
237 PF08496 Peptidase_S49_N: Pept 35.9 25 0.00055 32.4 2.1 15 373-387 128-142 (155)
238 TIGR00007 phosphoribosylformim 35.8 2.5E+02 0.0053 26.1 8.6 100 96-200 5-115 (230)
239 cd04730 NPD_like 2-Nitropropan 35.7 2.4E+02 0.0051 26.0 8.4 51 132-190 80-130 (236)
240 PRK15447 putative protease; Pr 35.6 2.3E+02 0.005 28.2 8.9 126 56-201 12-151 (301)
241 PRK14114 1-(5-phosphoribosyl)- 35.5 2.9E+02 0.0064 26.8 9.3 125 58-190 83-224 (241)
242 TIGR02658 TTQ_MADH_Hv methylam 35.5 1.7E+02 0.0036 30.3 8.1 49 281-332 108-156 (352)
243 PRK10430 DNA-binding transcrip 35.4 1.8E+02 0.0039 26.7 7.6 66 132-199 49-116 (239)
244 PRK11517 transcriptional regul 35.3 1.5E+02 0.0032 25.8 6.7 68 131-200 43-111 (223)
245 PF04131 NanE: Putative N-acet 35.3 2.2E+02 0.0047 27.6 8.2 112 61-187 3-117 (192)
246 COG2022 ThiG Uncharacterized e 35.1 34 0.00073 34.4 2.9 39 148-190 174-212 (262)
247 CHL00148 orf27 Ycf27; Reviewed 35.0 1.2E+02 0.0026 26.7 6.2 40 159-199 77-116 (240)
248 PRK10046 dpiA two-component re 35.0 1.7E+02 0.0037 26.7 7.3 66 132-199 50-117 (225)
249 PRK13856 two-component respons 34.9 2.6E+02 0.0056 25.2 8.4 67 132-199 45-112 (241)
250 cd01573 modD_like ModD; Quinol 34.8 95 0.0021 30.7 6.0 41 160-203 184-224 (272)
251 KOG3997 Major apurinic/apyrimi 34.8 13 0.00028 37.2 -0.0 14 231-244 175-188 (281)
252 cd08579 GDPD_memb_like Glycero 34.7 46 0.00099 30.7 3.6 30 48-77 188-218 (220)
253 TIGR02276 beta_rpt_yvtn 40-res 34.7 76 0.0016 21.2 3.8 37 287-327 1-37 (42)
254 PRK08187 pyruvate kinase; Vali 34.7 1.5E+02 0.0033 32.1 7.9 137 57-205 312-475 (493)
255 PRK00748 1-(5-phosphoribosyl)- 34.5 2.6E+02 0.0056 25.9 8.5 30 162-194 79-108 (233)
256 COG1585 Membrane protein impli 34.1 73 0.0016 28.8 4.7 36 281-318 101-138 (140)
257 PRK05567 inosine 5'-monophosph 34.1 2E+02 0.0044 30.5 8.6 147 59-232 229-391 (486)
258 COG0684 MenG Demethylmenaquino 34.0 29 0.00064 33.6 2.3 27 293-320 64-90 (210)
259 PRK13794 hypothetical protein; 33.9 52 0.0011 35.1 4.3 51 273-325 127-182 (479)
260 PRK14560 putative RNA-binding 33.8 69 0.0015 29.0 4.5 53 273-327 79-136 (160)
261 COG0084 TatD Mg-dependent DNas 33.8 19 0.00041 35.6 0.9 23 58-80 18-40 (256)
262 PF03060 NMO: Nitronate monoox 33.6 1.7E+02 0.0037 29.3 7.7 107 61-191 104-221 (330)
263 PRK00043 thiE thiamine-phospha 33.3 1.1E+02 0.0023 27.7 5.6 105 60-189 24-131 (212)
264 cd03703 aeIF5B_II aeIF5B_II: T 33.3 82 0.0018 27.8 4.7 20 329-348 5-24 (110)
265 cd07896 Adenylation_kDNA_ligas 33.2 96 0.0021 27.7 5.3 28 165-192 130-158 (174)
266 cd00945 Aldolase_Class_I Class 33.0 1.2E+02 0.0026 26.5 5.7 117 56-188 64-200 (201)
267 cd06206 bifunctional_CYPOR The 33.0 45 0.00098 33.8 3.5 41 287-332 196-238 (384)
268 PRK05464 Na(+)-translocating N 32.8 54 0.0012 33.6 4.1 39 288-332 244-282 (409)
269 TIGR02658 TTQ_MADH_Hv methylam 32.7 5.4E+02 0.012 26.7 11.2 78 272-358 252-330 (352)
270 COG0543 UbiB 2-polyprenylpheno 32.5 45 0.00097 32.1 3.2 103 217-333 9-116 (252)
271 cd06214 PA_degradation_oxidore 32.4 4E+02 0.0086 24.4 9.5 102 217-334 3-118 (241)
272 cd00381 IMPDH IMPDH: The catal 32.3 1.7E+02 0.0038 29.5 7.5 111 58-188 46-162 (325)
273 PF00107 ADH_zinc_N: Zinc-bind 32.3 2.8E+02 0.0061 22.6 9.1 110 51-180 15-129 (130)
274 PF00386 C1q: C1q domain; Int 32.2 40 0.00088 28.5 2.6 21 366-386 88-108 (127)
275 PRK13586 1-(5-phosphoribosyl)- 32.2 4.7E+02 0.01 25.2 10.5 123 58-188 83-217 (232)
276 PF13403 Hint_2: Hint domain 32.1 40 0.00087 30.3 2.7 16 367-382 15-30 (147)
277 cd08574 GDPD_GDE_2_3_6 Glycero 31.9 52 0.0011 31.5 3.6 28 49-76 222-250 (252)
278 TIGR01744 XPRTase xanthine pho 31.9 44 0.00095 31.4 3.0 35 280-315 96-135 (191)
279 PRK07315 fructose-bisphosphate 31.6 1.2E+02 0.0025 30.5 6.1 136 53-192 80-235 (293)
280 PRK04000 translation initiatio 31.5 4.2E+02 0.009 27.5 10.2 20 217-236 271-297 (411)
281 COG0157 NadC Nicotinate-nucleo 31.4 1E+02 0.0023 31.3 5.7 41 160-203 189-229 (280)
282 COG1908 FrhD Coenzyme F420-red 31.4 37 0.00079 31.0 2.3 21 170-190 41-61 (132)
283 KOG3638 Sonic hedgehog and rel 31.3 1.2E+02 0.0026 31.9 6.3 102 276-384 207-319 (414)
284 PRK02290 3-dehydroquinate synt 30.9 32 0.00069 35.8 2.1 34 169-202 13-46 (344)
285 PRK11083 DNA-binding response 30.8 1.6E+02 0.0034 25.6 6.1 66 132-199 47-114 (228)
286 PRK10360 DNA-binding transcrip 30.6 3.4E+02 0.0074 23.1 8.9 65 132-199 47-111 (196)
287 COG3535 Uncharacterized conser 30.5 1.2E+02 0.0027 31.8 6.1 55 315-383 256-325 (357)
288 cd08612 GDPD_GDE4 Glycerophosp 30.5 99 0.0021 30.4 5.3 45 149-198 251-296 (300)
289 PF00122 E1-E2_ATPase: E1-E2 A 30.5 35 0.00075 31.2 2.1 30 348-382 31-61 (230)
290 cd01571 NAPRTase_B Nicotinate 30.4 97 0.0021 31.1 5.3 46 160-205 185-240 (302)
291 TIGR02160 PA_CoA_Oxy5 phenylac 30.4 48 0.001 32.8 3.1 45 286-333 72-118 (352)
292 TIGR01387 cztR_silR_copR heavy 30.4 1.9E+02 0.0042 24.8 6.6 66 132-199 42-109 (218)
293 PRK06201 hypothetical protein; 30.3 33 0.00073 32.9 2.0 44 277-321 54-100 (221)
294 PRK13795 hypothetical protein; 30.2 55 0.0012 36.1 3.8 53 273-327 129-185 (636)
295 PRK13534 7-cyano-7-deazaguanin 30.1 40 0.00087 37.5 2.8 44 282-328 580-623 (639)
296 cd06219 DHOD_e_trans_like1 FAD 30.0 63 0.0014 30.5 3.7 58 270-333 43-106 (248)
297 PF00977 His_biosynth: Histidi 29.8 2E+02 0.0044 27.3 7.1 128 52-190 75-221 (229)
298 cd06191 FNR_iron_sulfur_bindin 29.6 47 0.001 30.5 2.7 49 278-332 58-110 (231)
299 PTZ00314 inosine-5'-monophosph 29.5 1.2E+02 0.0026 32.6 6.1 66 119-188 239-309 (495)
300 PF00877 NLPC_P60: NlpC/P60 fa 29.4 26 0.00055 28.7 0.9 28 367-394 46-73 (105)
301 TIGR01588 citE citrate lyase, 29.4 5.7E+02 0.012 25.3 10.6 128 54-194 6-157 (288)
302 cd00452 KDPG_aldolase KDPG and 29.3 1.6E+02 0.0034 27.0 6.1 79 113-197 8-91 (190)
303 PF14801 GCD14_N: tRNA methylt 29.2 57 0.0012 25.8 2.7 19 297-315 6-24 (54)
304 COG0503 Apt Adenine/guanine ph 29.2 33 0.0007 31.8 1.6 69 246-314 56-133 (179)
305 cd08556 GDPD Glycerophosphodie 29.1 68 0.0015 27.9 3.6 31 48-78 158-189 (189)
306 PF06938 DUF1285: Protein of u 29.1 2.6E+02 0.0055 25.8 7.3 37 318-354 46-84 (148)
307 PRK13587 1-(5-phosphoribosyl)- 29.1 4.1E+02 0.0088 25.5 9.1 122 58-188 86-220 (234)
308 cd04731 HisF The cyclase subun 29.0 4.1E+02 0.0089 25.0 9.0 22 58-79 81-102 (243)
309 cd00508 MopB_CT_Fdh-Nap-like T 29.0 68 0.0015 26.2 3.4 24 296-323 48-71 (120)
310 PRK12778 putative bifunctional 29.0 78 0.0017 35.1 4.7 57 270-332 44-106 (752)
311 COG0263 ProB Glutamate 5-kinas 28.7 6.3E+02 0.014 26.9 10.8 161 105-321 136-330 (369)
312 cd08580 GDPD_Rv2277c_like Glyc 28.7 76 0.0016 31.2 4.1 30 50-79 230-260 (263)
313 PRK10529 DNA-binding transcrip 28.6 3.1E+02 0.0068 24.0 7.7 67 132-200 45-112 (225)
314 PRK08072 nicotinate-nucleotide 28.5 1.5E+02 0.0033 29.6 6.3 41 160-203 189-229 (277)
315 cd08555 PI-PLCc_GDPD_SF Cataly 28.3 69 0.0015 28.8 3.6 28 49-76 148-177 (179)
316 PRK05967 cystathionine beta-ly 28.3 28 0.0006 36.1 1.1 118 63-187 72-205 (395)
317 PRK07226 fructose-bisphosphate 28.1 1.5E+02 0.0032 28.9 5.9 70 132-205 173-253 (267)
318 cd03702 IF2_mtIF2_II This fami 28.1 3.5E+02 0.0076 22.9 7.5 22 328-349 4-25 (95)
319 PF01959 DHQS: 3-dehydroquinat 28.0 37 0.00079 35.5 1.9 31 172-202 15-45 (354)
320 PRK14114 1-(5-phosphoribosyl)- 28.0 4.4E+02 0.0096 25.6 9.2 103 93-201 4-117 (241)
321 PRK11475 DNA-binding transcrip 28.0 1.3E+02 0.0028 28.2 5.4 41 159-199 68-108 (207)
322 PRK11143 glpQ glycerophosphodi 27.6 82 0.0018 32.3 4.3 50 146-197 290-348 (355)
323 COG0469 PykF Pyruvate kinase [ 27.3 2.2E+02 0.0049 30.9 7.6 135 57-204 175-336 (477)
324 PRK04132 replication factor C 27.3 1.4E+02 0.0029 34.7 6.3 72 300-382 89-162 (846)
325 PF04203 Sortase: Sortase fami 27.1 80 0.0017 26.5 3.5 35 287-321 51-85 (128)
326 cd08610 GDPD_GDE6 Glycerophosp 27.0 99 0.0022 31.3 4.7 54 142-201 229-283 (316)
327 PLN02363 phosphoribosylanthran 27.0 5.4E+02 0.012 25.5 9.7 119 53-191 47-178 (256)
328 PRK05581 ribulose-phosphate 3- 26.9 1.4E+02 0.0031 27.1 5.4 30 50-79 63-93 (220)
329 PRK09836 DNA-binding transcrip 26.8 2.1E+02 0.0046 25.2 6.3 67 132-200 44-112 (227)
330 cd08608 GDPD_GDE2 Glycerophosp 26.3 96 0.0021 32.0 4.5 35 49-85 222-257 (351)
331 PRK13957 indole-3-glycerol-pho 26.2 6.6E+02 0.014 25.0 10.3 76 113-195 154-241 (247)
332 COG1607 Acyl-CoA hydrolase [Li 26.2 2E+02 0.0043 26.8 6.2 77 289-380 62-138 (157)
333 cd03174 DRE_TIM_metallolyase D 26.2 1.4E+02 0.003 27.9 5.2 93 148-244 53-176 (265)
334 PRK07455 keto-hydroxyglutarate 26.1 4.2E+02 0.009 24.6 8.3 77 114-196 17-98 (187)
335 cd02810 DHOD_DHPD_FMN Dihydroo 26.1 5E+02 0.011 24.9 9.2 84 107-190 97-197 (289)
336 TIGR00219 mreC rod shape-deter 26.0 6.7E+02 0.015 25.0 11.0 119 194-321 98-241 (283)
337 cd08567 GDPD_SpGDE_like Glycer 26.0 83 0.0018 29.5 3.7 31 48-78 229-260 (263)
338 PRK08649 inosine 5-monophospha 25.9 2.1E+02 0.0045 29.8 6.9 122 53-191 134-287 (368)
339 cd08561 GDPD_cytoplasmic_ScUgp 25.8 1.3E+02 0.0027 28.4 4.9 50 142-197 196-246 (249)
340 TIGR01304 IMP_DH_rel_2 IMP deh 25.7 1E+02 0.0022 32.1 4.6 56 131-189 154-216 (369)
341 COG1064 AdhP Zn-dependent alco 25.4 5.8E+02 0.013 26.6 9.9 122 52-197 192-318 (339)
342 PRK03378 ppnK inorganic polyph 25.3 2.1E+02 0.0046 28.7 6.6 84 284-386 181-265 (292)
343 PF14031 D-ser_dehydrat: Putat 25.1 4.1E+02 0.0088 22.2 7.5 63 221-306 6-76 (94)
344 PRK11107 hybrid sensory histid 25.1 5E+02 0.011 28.5 9.9 136 59-199 617-780 (919)
345 PRK04980 hypothetical protein; 24.8 56 0.0012 28.5 2.2 23 370-392 29-51 (102)
346 PRK05096 guanosine 5'-monophos 24.8 63 0.0014 33.8 2.9 69 119-187 106-177 (346)
347 PLN03115 ferredoxin--NADP(+) r 24.6 46 0.001 34.3 2.0 40 288-331 183-222 (367)
348 PF01053 Cys_Met_Meta_PP: Cys/ 24.6 77 0.0017 32.8 3.5 118 61-184 61-194 (386)
349 PRK15479 transcriptional regul 24.5 2.4E+02 0.0052 24.3 6.1 40 160-200 73-112 (221)
350 PRK04128 1-(5-phosphoribosyl)- 24.4 2.7E+02 0.0058 26.7 6.9 68 118-193 30-106 (228)
351 cd06202 Nitric_oxide_synthase 24.4 60 0.0013 33.4 2.7 40 288-332 214-254 (406)
352 TIGR03787 marine_sort_RR prote 24.2 1.2E+02 0.0027 26.5 4.3 67 132-199 44-113 (227)
353 COG0159 TrpA Tryptophan syntha 24.2 2.5E+02 0.0055 28.3 6.9 115 60-191 112-235 (265)
354 PRK06512 thiamine-phosphate py 24.0 3.9E+02 0.0085 25.6 7.9 102 60-190 29-139 (221)
355 cd08601 GDPD_SaGlpQ_like Glyce 23.4 1.4E+02 0.0031 28.1 4.9 44 149-197 208-252 (256)
356 PRK06843 inosine 5-monophospha 23.4 3.5E+02 0.0076 28.8 8.0 120 53-191 148-287 (404)
357 TIGR00735 hisF imidazoleglycer 23.3 4.2E+02 0.009 25.4 8.0 103 95-203 9-120 (254)
358 cd06182 CYPOR_like NADPH cytoc 23.3 84 0.0018 30.4 3.3 41 288-332 83-123 (267)
359 PRK02615 thiamine-phosphate py 23.3 3.9E+02 0.0084 27.7 8.2 101 60-188 160-266 (347)
360 PRK08999 hypothetical protein; 23.0 6.7E+02 0.014 24.4 9.5 123 61-189 148-308 (312)
361 TIGR01303 IMP_DH_rel_1 IMP deh 23.0 61 0.0013 34.7 2.5 74 111-187 216-292 (475)
362 PRK01185 ppnK inorganic polyph 22.9 2.9E+02 0.0062 27.6 7.0 85 284-387 163-247 (271)
363 PRK09206 pyruvate kinase; Prov 22.8 1.8E+02 0.004 31.3 6.0 75 119-194 171-248 (470)
364 PRK10955 DNA-binding transcrip 22.7 4.6E+02 0.01 22.9 7.6 66 132-199 44-110 (232)
365 PRK10816 DNA-binding transcrip 22.6 4.7E+02 0.01 22.9 7.6 67 132-200 44-112 (223)
366 PRK04539 ppnK inorganic polyph 22.6 2.6E+02 0.0057 28.1 6.7 85 284-387 186-270 (296)
367 TIGR03404 bicupin_oxalic bicup 22.6 5.7E+02 0.012 26.5 9.3 100 270-392 211-310 (367)
368 PRK07609 CDP-6-deoxy-delta-3,4 22.5 77 0.0017 31.2 2.9 97 216-332 103-212 (339)
369 PRK10161 transcriptional regul 22.5 4.6E+02 0.01 23.0 7.6 67 132-200 46-116 (229)
370 TIGR03684 arCOG00985 arCOG0415 22.3 1.3E+02 0.0028 26.9 4.1 53 273-328 72-130 (150)
371 cd08606 GDPD_YPL110cp_fungi Gl 22.3 1.2E+02 0.0026 29.2 4.2 45 149-198 235-282 (286)
372 PLN02252 nitrate reductase [NA 22.3 3.6E+02 0.0077 31.4 8.5 110 216-332 635-766 (888)
373 PF03061 4HBT: Thioesterase su 22.3 1.1E+02 0.0025 22.5 3.2 30 288-322 35-64 (79)
374 PLN02623 pyruvate kinase 22.3 1.1E+02 0.0023 34.1 4.2 61 132-194 291-353 (581)
375 cd08579 GDPD_memb_like Glycero 22.0 6.2E+02 0.014 23.2 8.9 126 59-203 15-147 (220)
376 PRK07695 transcriptional regul 21.9 6.2E+02 0.013 23.2 10.0 103 60-190 18-123 (201)
377 cd04451 S1_IF1 S1_IF1: Transla 21.8 3E+02 0.0065 21.0 5.5 45 244-306 4-50 (64)
378 PRK06247 pyruvate kinase; Prov 21.7 2.2E+02 0.0048 30.9 6.3 58 132-194 186-245 (476)
379 PTZ00327 eukaryotic translatio 21.7 7.1E+02 0.015 26.7 10.0 20 218-237 305-331 (460)
380 COG2871 NqrF Na+-transporting 21.2 72 0.0016 33.3 2.5 54 268-334 232-285 (410)
381 cd02786 MopB_CT_3 The MopB_CT_ 21.0 1.5E+02 0.0033 24.3 4.1 23 296-322 44-66 (116)
382 PF05690 ThiG: Thiazole biosyn 20.9 61 0.0013 32.5 1.9 45 148-196 167-216 (247)
383 PTZ00300 pyruvate kinase; Prov 20.9 1.5E+02 0.0031 32.0 4.8 62 131-194 159-222 (454)
384 PF09845 DUF2072: Zn-ribbon co 20.9 75 0.0016 29.1 2.3 38 345-388 82-119 (131)
385 PRK10537 voltage-gated potassi 20.8 6.5E+02 0.014 26.4 9.3 72 113-193 285-360 (393)
386 PRK08558 adenine phosphoribosy 20.7 91 0.002 30.3 3.0 35 281-315 153-194 (238)
387 PLN02929 NADH kinase 20.6 1.3E+02 0.0028 30.6 4.2 84 284-386 201-289 (301)
388 PRK10403 transcriptional regul 20.6 3.6E+02 0.0077 22.9 6.3 39 161-200 82-120 (215)
389 TIGR00451 unchar_dom_2 unchara 20.5 1.5E+02 0.0032 24.9 3.9 55 271-328 31-91 (107)
390 PRK09935 transcriptional regul 20.5 3.5E+02 0.0077 23.0 6.3 40 160-200 78-117 (210)
391 PRK13914 invasion associated s 20.5 68 0.0015 34.8 2.2 31 365-395 419-449 (481)
392 cd02778 MopB_CT_Thiosulfate-R- 20.5 1.4E+02 0.0031 24.7 3.8 55 256-322 11-65 (123)
393 PRK02645 ppnK inorganic polyph 20.5 2.9E+02 0.0063 27.7 6.5 84 284-386 184-269 (305)
394 TIGR02798 ligK_PcmE 4-carboxy- 20.3 69 0.0015 31.0 2.1 43 277-320 50-95 (222)
395 PRK10766 DNA-binding transcrip 20.3 1.5E+02 0.0033 25.9 4.1 38 161-199 75-112 (221)
396 TIGR02154 PhoB phosphate regul 20.2 1.7E+02 0.0036 25.3 4.2 39 160-199 77-115 (226)
397 COG1385 Uncharacterized protei 20.1 1.3E+02 0.0029 29.5 4.0 56 271-328 5-63 (246)
398 PF11303 DUF3105: Protein of u 20.1 1.4E+02 0.0031 26.8 3.8 34 172-205 40-74 (130)
399 PTZ00141 elongation factor 1- 20.0 3.7E+02 0.0081 28.3 7.5 42 225-275 289-330 (446)
400 cd08606 GDPD_YPL110cp_fungi Gl 20.0 1.6E+02 0.0034 28.4 4.4 30 49-78 244-276 (286)
No 1
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=100.00 E-value=8.1e-135 Score=999.35 Aligned_cols=340 Identities=48% Similarity=0.794 Sum_probs=324.9
Q ss_pred cEEEE-----EeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeee---cCCc------cccCCCCeeEEEEE
Q 015764 51 KRVWI-----WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFI---KEGE------VYDSGDRRVGSIIE 116 (401)
Q Consensus 51 K~vWi-----w~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~---~~g~------~~~~~gk~v~~~~~ 116 (401)
|++|| |+++|++||+|||+|||+|+|++++.+++++|+++.++.+..- +++. .++..|+.+|.+++
T Consensus 1 K~~Wi~~~~~w~~~k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~ 80 (354)
T PF01959_consen 1 KEVWIDADGPWEERKEVVTAALESGVDGVVVDDEDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVE 80 (354)
T ss_pred CeEEEEcCCChhhHHHHHHHHHHcCCCEEEECHhHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEE
Confidence 78999 8899999999999999999999999999999999999885332 2232 23578999999999
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHH
Q 015764 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAV 196 (401)
Q Consensus 117 v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev 196 (401)
|.++++++.++.+.+..+|+|++++||||||||||||+||+++++||+.|+|++||+++|++||+|+|||+|+|+|+++|
T Consensus 81 i~~~~~~~~a~~~~~~~~~~iv~~~Dw~iIPlEnliA~~~~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei 160 (354)
T PF01959_consen 81 ITDKEDEEEACELAKRADYVIVEFRDWTIIPLENLIAALQGSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEI 160 (354)
T ss_pred ECCHHHHHHHHHHhccCCeEEEEcCCCcEecHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee
Q 015764 197 LALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN 276 (401)
Q Consensus 197 ~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVN 276 (401)
++++++++.. +.++++|++||||+|+|+||||||||||||+|+|||||||||||+|||||||||++||||++||||||
T Consensus 161 ~~~~~~~~~~--~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVN 238 (354)
T PF01959_consen 161 KALVALLKER--SQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPYVASRPFRVN 238 (354)
T ss_pred HHHHHHHhhc--cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCCCCCCCceEe
Confidence 9999998643 66789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 015764 277 AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVS 356 (401)
Q Consensus 277 AGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~ 356 (401)
|||||||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++ +|+++|+||||||||||++
T Consensus 239 AGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR~~~VGRvKIE~RPLllIeA~~---~g~~~svilQnaetIRlv~ 315 (354)
T PF01959_consen 239 AGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTRTAIVGRVKIERRPLLLIEAEA---DGKRISVILQNAETIRLVG 315 (354)
T ss_pred cCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEEEEEeeEEEEeecceEEEEEEe---CCeEEEEEEecCcEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999 6999999999999999999
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEEecCCCcccceeeeeEEeeC
Q 015764 357 PCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 401 (401)
Q Consensus 357 p~~g~~~~g~~vsVt~LK~GD~VL~~~~~~gRHfG~~I~E~I~Ek 401 (401)
|+ |+|+|||+|||||+||+|++++||||||+|+|||+||
T Consensus 316 p~------G~~vsVt~Lk~GD~vL~~~~~~~RHfG~~I~E~I~Ek 354 (354)
T PF01959_consen 316 PD------GEPVSVTELKPGDEVLVYLEEAGRHFGMKIEEFIIEK 354 (354)
T ss_pred CC------CCEeeeeecCCCCEEEEEecCCCcccceEeeeEEecC
Confidence 98 7999999999999999999999999999999999998
No 2
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=1.6e-134 Score=993.70 Aligned_cols=336 Identities=44% Similarity=0.687 Sum_probs=319.9
Q ss_pred CcEEEEEeCc-----hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCC---ccccCCCCeeEEEEEecChh
Q 015764 50 PKRVWIWTES-----KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEG---EVYDSGDRRVGSIIEVSTPQ 121 (401)
Q Consensus 50 ~K~vWiw~~~-----K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g---~~~~~~gk~v~~~~~v~~~e 121 (401)
+|++|||.++ |++||+|||||||+|+|++++++.+++|+++ ++++.+++ ..++.+|++++.|++|.+++
T Consensus 1 mK~vWi~~~~~~~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i---~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~ 77 (344)
T PRK02290 1 MKFVWIKARPDWEERKEVVTTALESGVDGVVVDEEDVERVRELGRI---KVAADDPDADAVVISGSAGEDGAYVEIRDKE 77 (344)
T ss_pred CceEEEEcCCCchhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe---eEEEEcCCcchhhhcccCCceEEEEEECCHH
Confidence 6999999988 9999999999999999998766666666655 55555555 34678899999999999999
Q ss_pred hhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 015764 122 ELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (401)
Q Consensus 122 ~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (401)
+++.++.+.+.++++|++++||||||||||||+| +++++||+.++|++||+++|++||+|+|||+|+|+|+++|+++++
T Consensus 78 ~e~~a~~~~~~~~~viv~~~dW~iIPlEnlIA~~-~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~ 156 (344)
T PRK02290 78 DEEFAAELAKEVDYVIVEGRDWTIIPLENLIADL-GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVA 156 (344)
T ss_pred HHHHHHHhhccCCEEEEECCCCcEecHHHHHhhh-cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHH
Confidence 9999999998899999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCce
Q 015764 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVH 281 (401)
Q Consensus 202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGaVH 281 (401)
+++. ++++++|++||||+|+|+||||||||||||+|+|||||||||||+|||||||||+++|||++|||||||||||
T Consensus 157 ~~~~---~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVh 233 (344)
T PRK02290 157 LIEE---AREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRPFRVNAGAVH 233 (344)
T ss_pred HHhc---cCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCCeeEecCcce
Confidence 8854 7889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCC
Q 015764 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGT 361 (401)
Q Consensus 282 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~ 361 (401)
||+++|||||+|||||+|||+||+||++|++|+++|||||||+|||+||||++ +|+++++||||||||||++|+
T Consensus 234 aYv~~pgg~T~YLsEL~sG~eVlvVd~~G~tR~~~VGRvKIE~RPL~lIeAe~---~g~~~~viLQnaetIrlv~~d--- 307 (344)
T PRK02290 234 AYVRVPGDKTRYLSELRSGDEVLVVDADGNTREAIVGRVKIEKRPLLLIEAEY---GGKRIRTILQNAETIRLVTPD--- 307 (344)
T ss_pred eEEEcCCCcchhhHhhcCCCEEEEEeCCCCEEEEEeeEEEEeeccEEEEEEEe---CCeEEEEEEecCcEEEEECCC---
Confidence 99999999999999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred CCCCceeeeeecCCCCEEEEEecCCCcccceeeeeEEeeC
Q 015764 362 GEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 401 (401)
Q Consensus 362 ~~~g~~vsVt~LK~GD~VL~~~~~~gRHfG~~I~E~I~Ek 401 (401)
|+|+|||+|||||+||+|++++||||||+|+|||+||
T Consensus 308 ---G~~vsVt~Lk~GD~VL~~~~~~~RHfG~~i~E~IiEk 344 (344)
T PRK02290 308 ---GKPVSVVDLKPGDEVLGYLEEAARHFGMAIEETIIEK 344 (344)
T ss_pred ---CCEeeeeecCCCCEEEEEecCCcccccceeeeEEeeC
Confidence 7899999999999999999999999999999999997
No 3
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-130 Score=948.36 Aligned_cols=342 Identities=44% Similarity=0.713 Sum_probs=323.4
Q ss_pred CCcEEEE------EeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeee-----eee--cCC--------------
Q 015764 49 KPKRVWI------WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP-----LFI--KEG-------------- 101 (401)
Q Consensus 49 ~~K~vWi------w~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~-----l~~--~~g-------------- 101 (401)
.+|++|+ |++.|..+|+|||+|+|.+++++++.+.+++||++.++.| +++ ++|
T Consensus 1 ~mK~vWl~a~~~~WeekK~~it~alEaG~d~vvv~~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~ 80 (376)
T COG1465 1 MMKEVWLLAEDESWEEKKKRITAALEAGVDVVVVRPADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISG 80 (376)
T ss_pred CcceEEEEcCCcchhHhhHHHHHHHhcCCCEEEECHHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccc
Confidence 4799999 7788999999999999999999999999999999999988 222 333
Q ss_pred -------ccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHH
Q 015764 102 -------EVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQI 174 (401)
Q Consensus 102 -------~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~ 174 (401)
..+...|+.++.|+.|.++++++.++.....+||+|+.++||||||||||||.+|..+++|+|.|+|++||++
T Consensus 81 s~di~~~~~~~~~G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWkiIPLENlIA~l~~e~~kliA~V~saeEA~v 160 (376)
T COG1465 81 SADIEALRELMDRGHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKIIPLENLIADLQHEKVKLIAGVKSAEEARV 160 (376)
T ss_pred cccHHHHHHhhhcCcceEEEEEEcCccchHHHHhhccccceEEEEcCcceEeeHHHHHHHhhccceEEEEEeccHHHHHH
Confidence 1335679999999999999996666666656899999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCce
Q 015764 175 FLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARG 254 (401)
Q Consensus 175 al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~g 254 (401)
||++||+|+|||+|+++||++|+++.++++. .++++++|++|+||+|+|+|+||||||||||||.+||||||||+|+|
T Consensus 161 A~eTLE~GaDgVll~~~d~~eIk~~~~~~~e--~~~E~~eL~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~g 238 (376)
T COG1465 161 ALETLEKGADGVLLDSDDPEEIKKTAEVVEE--AESERLELVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRG 238 (376)
T ss_pred HHHHHhccCceEEeCCCCHHHHHHHHHHHHH--hccceeEEEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCc
Confidence 9999999999999999999999999998854 57789999999999999999999999999999999999999999999
Q ss_pred EEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 015764 255 LFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 334 (401)
Q Consensus 255 lFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~ 334 (401)
||||||||.+||||++|||||||||||||+++|||||+|||||++||+|++||.+|++|.++|||+|||+|||+||||++
T Consensus 239 mFlVhsEs~espYVAaRPFRVNAG~VhaYi~vPg~kTkYLaEL~aGDeV~iVD~dGr~R~aiVGRvKIErRPl~lIeAey 318 (376)
T COG1465 239 MFLVHSESEESPYVAARPFRVNAGAVHAYIRVPGGKTKYLAELKAGDEVLIVDFDGRTRSAIVGRVKIERRPLMLIEAEY 318 (376)
T ss_pred EEEEecccccCcccccCceeecccceeEEEEcCCCceEEhhhhcCCCeEEEEecCCceeEEEEEEEEeecCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEeEecceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCcccceeeeeEEeeC
Q 015764 335 NSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGIEIQEFIVEN 401 (401)
Q Consensus 335 ~~~~G~~~sviLQnAETIRLv~p~~g~~~~g~~vsVt~LK~GD~VL~~~~~~gRHfG~~I~E~I~Ek 401 (401)
+|.++++||||||||||++|+ |+|+||++|||||+||+|+++.||||||+|+|+|+||
T Consensus 319 ---~g~~i~tiLQNAETIkLv~~d------G~pvSV~eLk~GD~vlv~~ee~aRHFGm~i~EtIIEk 376 (376)
T COG1465 319 ---EGVEISTILQNAETIKLVNPD------GEPVSVAELKPGDEVLVYLEEKARHFGMAIEETIIEK 376 (376)
T ss_pred ---cCcEEEEEeccceeEEEEcCC------CcEeeeEecCCCCEEEEEehhccchhchhhhheeccC
Confidence 699999999999999999999 8999999999999999999999999999999999997
No 4
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=97.18 E-value=0.0022 Score=61.14 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=53.0
Q ss_pred CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEee----eeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEE
Q 015764 279 PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVV----GRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVAL 354 (401)
Q Consensus 279 aVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~V----GRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRL 354 (401)
|-.|.|.+++|.++-++||+.||+||++|.+|+..-..| -|-.-.++.++-||.+ +|+. +.|=.+-=|-.
T Consensus 14 pg~a~V~~~~G~~k~m~~L~iGD~Vla~d~~G~~~yS~V~~flhr~~~~~~~F~~i~te----~g~~--l~LTp~HLI~v 87 (217)
T PF01079_consen 14 PGDATVTLEDGGRKRMSDLKIGDRVLAVDSDGKLVYSPVIMFLHRDPEQRAEFVVIETE----DGRS--LTLTPNHLIFV 87 (217)
T ss_dssp -TT-EEEBTTS-EEEGGG--TT-EEEEE-TTS-EEEEEEEEEEEEEEEEEEEEEEEEET----TS-E--EEE-TT-EEEE
T ss_pred CCCCEEEeCCCCEeEHHHCCCCCEEEEecCCCcEEEEeEEEEeccCccccEEEEEEEcC----CCCe--EEecCCcEEEE
Confidence 456889999999999999999999999999998654432 3333455667777653 4553 22222222333
Q ss_pred ecCCCCCCCCCceeeeeecCCCCEEEEE
Q 015764 355 VSPCKGTGEQEKAIPVTSLKVGDEVLLR 382 (401)
Q Consensus 355 v~p~~g~~~~g~~vsVt~LK~GD~VL~~ 382 (401)
...+......-+++--.++++||.|++.
T Consensus 88 ~~~~~~~~~~~~~vfA~~V~~Gd~v~~~ 115 (217)
T PF01079_consen 88 ADCNGSESSNFRAVFASDVRVGDCVLVS 115 (217)
T ss_dssp EETTTTEE---EEEEGGG--TT-EEEEE
T ss_pred ecCCCCcccccceeehhhCCCCCEEEEE
Confidence 3333211111256888899999999993
No 5
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=97.18 E-value=0.002 Score=51.07 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=51.0
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEe-eeeEEEe-ccceeEEEEEecCCCCeEEEEEeEecceEEEecCC
Q 015764 282 AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAV-VGRVKIE-SRPLILVEAKTNSGDQTLYGIILQNAETVALVSPC 358 (401)
Q Consensus 282 aYv~~pggkT~YLSEL~sG~eVLvVd~~-G~tR~~~-VGRvKIE-~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~ 358 (401)
+.|.+++|....+.+|+.||+|+.+|.. ++.+... +-..+-+ ..||+.|..+. |..+.+--++. + ++..+
T Consensus 7 t~V~~~~gg~~~i~~l~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----g~~i~~T~~H~--~-~~~~~ 79 (100)
T smart00306 7 TLVLTEDGGIKKIEELEEGDKVLALDEGTLKYSPVKVFLVREPKGEKKFYRIKTEN----GREITLTPDHL--L-LVRDG 79 (100)
T ss_pred CEEEcCCCCEEEHHHcCCCCEEEEecCCCcEEEEEEEEEEEcCCcceeEEEEEECC----CCEEEECCCCE--E-EEecC
Confidence 5788999999999999999999999973 2222111 1111111 23444444321 33222211111 1 22222
Q ss_pred CCCCCCCceeeeeecCCCCEEEEE
Q 015764 359 KGTGEQEKAIPVTSLKVGDEVLLR 382 (401)
Q Consensus 359 ~g~~~~g~~vsVt~LK~GD~VL~~ 382 (401)
+ ....+..-+||+||.|++.
T Consensus 80 ~----~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 80 G----KLVWVFASELKPGDYVLVP 99 (100)
T ss_pred C----cEEEEEHHHCCCCCEEEec
Confidence 0 0237889999999999863
No 6
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=93.58 E-value=0.41 Score=39.98 Aligned_cols=89 Identities=22% Similarity=0.310 Sum_probs=54.1
Q ss_pred EEEecCCceeeeeeccC--CCeEEEEcCCCCeeEEeeeeE-EE-eccceeEEEEEecCCCCeEEEEEeEecceEEEecCC
Q 015764 283 YVLVPGGKTCYLSELKS--GKEVIVVDQKGRQRTAVVGRV-KI-ESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPC 358 (401)
Q Consensus 283 Yv~~pggkT~YLSEL~s--G~eVLvVd~~G~tR~~~VGRv-KI-E~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~ 358 (401)
=|.+++++..-+.||.. |++|+..|..|+.+...|-.+ +- ...|++-|..+. |..+.+--++ ==++. +
T Consensus 7 ~V~~~d~~~~~i~~l~~~~g~~V~~~d~~~~~~~~~v~~~~~~~~~~~~~~i~~~~----g~~l~~T~~H---~~~~~-~ 78 (136)
T cd00081 7 LVLLEDGGRKKIEELVEKKGDKVLALDETGKLVFSKVLKVLRRDYEKKFYKIKTES----GREITLTPDH---LLFVL-E 78 (136)
T ss_pred EEEeccCcEEEhHHhhhccCCEEEEECCCCCEEEEEeeEEEEEcCCCcEEEEEECC----CcEEEEcCCC---EEEEE-e
Confidence 46788788899999999 999999999776554433221 11 345555555532 3333221111 11111 1
Q ss_pred CCCCCCCceeeeeecCCCCEEEEE
Q 015764 359 KGTGEQEKAIPVTSLKVGDEVLLR 382 (401)
Q Consensus 359 ~g~~~~g~~vsVt~LK~GD~VL~~ 382 (401)
++ ....+...+|++||.|+..
T Consensus 79 ~~---~~~~~~a~~l~~gd~l~~~ 99 (136)
T cd00081 79 DG---ELKWVFASDLKPGDYVLVP 99 (136)
T ss_pred CC---eEEEEEHHHCCCCCEEEEc
Confidence 00 1356778899999999986
No 7
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=91.34 E-value=2.3 Score=39.25 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=66.5
Q ss_pred CchhHhHHHHHhCCcEEEEcCcch--hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVMTAAVERGWNTFVFLSENQ--QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~~--~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
.+...+..|++.|+|.+++...+. +..+++-+-. ..-|.. ..+.+.+.++++++... .+++
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~-------------~~~g~~--~~v~v~~~~e~~~~~~~--g~~~ 144 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA-------------RELGME--VLVEVHDEEELERALAL--GAKI 144 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH-------------HHcCCe--EEEEECCHHHHHHHHHc--CCCE
Confidence 446689999999999998643211 2222221111 011222 35567888887766543 5788
Q ss_pred EEEeCCCCeeee--h---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 136 IVIDLPDWQVIP--A---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 136 vvv~~~DW~iIP--l---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
+.+..+|-+..+ + .++.+.+. .+..+++ .++++++++.++ +.|+|||++-+
T Consensus 145 i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~---~~Ga~gvivGs 202 (217)
T cd00331 145 IGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTPEDVKRLA---EAGADAVLIGE 202 (217)
T ss_pred EEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHH---HcCCCEEEECH
Confidence 888866644333 2 33333321 2335554 578888888665 55999999754
No 8
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=90.43 E-value=1.6 Score=39.87 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=71.9
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
-++++.++++.|++.+-++-.+..-.+.+..+....| +..++ -..|.+.++++.+... +++.++.
T Consensus 18 ~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~------------~~~iG-ag~v~~~~~~~~a~~~--Ga~~i~~ 82 (190)
T cd00452 18 ALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP------------EALIG-AGTVLTPEQADAAIAA--GAQFIVS 82 (190)
T ss_pred HHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC------------CCEEE-EEeCCCHHHHHHHHHc--CCCEEEc
Confidence 4678999999999999987654333333333322111 12222 2357888887766542 5677766
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 015764 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (401)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (401)
-..| +.++...+..+..++..+.|.+||+.+ ++.|+|-|-+.|.++
T Consensus 83 p~~~------~~~~~~~~~~~~~~i~gv~t~~e~~~A---~~~Gad~i~~~p~~~ 128 (190)
T cd00452 83 PGLD------PEVVKAANRAGIPLLPGVATPTEIMQA---LELGADIVKLFPAEA 128 (190)
T ss_pred CCCC------HHHHHHHHHcCCcEECCcCCHHHHHHH---HHCCCCEEEEcCCcc
Confidence 4444 345555555566788899999998766 578999999987664
No 9
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=89.52 E-value=1.4 Score=42.83 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=69.9
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 015764 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (401)
Q Consensus 109 k~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~----DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (401)
..+++...+.+|.-.|.++. . ..|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ...-.+|+.|++
T Consensus 12 ~~~G~~~~~~sp~~~e~~a~-~-G~D~v~iD~EHg~~~~~--~~~~~~~a~~~~g~~~~VRvp~~~~-~~i~r~LD~Ga~ 86 (249)
T TIGR03239 12 TLIGCWSALGNPITTEVLGL-A-GFDWLLLDGEHAPNDVL--TFIPQLMALKGSASAPVVRPPWNEP-VIIKRLLDIGFY 86 (249)
T ss_pred ceEEEEEcCCCcHHHHHHHh-c-CCCEEEEecccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhcCCCC
Confidence 45678888889888666664 3 4899999765 444 4688998888888888999988754 555789999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 015764 185 GIVLK-VEDVKAVLALKEYF 203 (401)
Q Consensus 185 GVvl~-~~d~~ev~~l~~~~ 203 (401)
||+++ .++.++++++.+..
T Consensus 87 gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 87 NFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred EEEecCcCCHHHHHHHHHHc
Confidence 99996 56788888777654
No 10
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.51 E-value=1.3 Score=43.63 Aligned_cols=92 Identities=9% Similarity=0.063 Sum_probs=70.1
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 015764 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (401)
Q Consensus 109 k~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGV 186 (401)
..+++.+.+.++.-.|.++. . ..|+++|+.. ....--+++++.+++..+...+..+.+.+. ..+..+|+.|++||
T Consensus 18 ~~~G~~~~~~sp~~~E~~a~-~-GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~GA~GI 94 (267)
T PRK10128 18 VQIGLWLSSTTSYMAEIAAT-S-GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSK-PLIKQVLDIGAQTL 94 (267)
T ss_pred ceEEEEecCCCcHHHHHHHH-c-CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCH-HHHHHHhCCCCCee
Confidence 44678888889888666665 3 4999999765 333345678888888888888888887755 55578999999999
Q ss_pred EEe-cCCHHHHHHHHHhh
Q 015764 187 VLK-VEDVKAVLALKEYF 203 (401)
Q Consensus 187 vl~-~~d~~ev~~l~~~~ 203 (401)
+++ .++.++++++.+..
T Consensus 95 ivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 95 LIPMVDTAEQARQVVSAT 112 (267)
T ss_pred EecCcCCHHHHHHHHHhc
Confidence 996 46688888777655
No 11
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.95 E-value=1.6 Score=42.46 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=68.8
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCC----CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 015764 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLP----DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (401)
Q Consensus 109 k~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~----DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (401)
..+++...+.++.-.|.++. . ..|+|+|+.. ||. -+++++.+++..+...+..+.+.+. ..+..+|+.|++
T Consensus 19 ~~~g~~~~~~sp~~~e~~a~-~-G~D~v~iD~EHg~~~~~--~~~~~i~a~~~~g~~~lVRvp~~~~-~~i~r~LD~Ga~ 93 (256)
T PRK10558 19 VQIGCWSALANPITTEVLGL-A-GFDWLVLDGEHAPNDVS--TFIPQLMALKGSASAPVVRVPTNEP-VIIKRLLDIGFY 93 (256)
T ss_pred ceEEEEEcCCCcHHHHHHHh-c-CCCEEEEccccCCCCHH--HHHHHHHHHhhcCCCcEEECCCCCH-HHHHHHhCCCCC
Confidence 44678888888877666554 3 4899999664 444 4678888888888888999988865 445779999999
Q ss_pred eEEEe-cCCHHHHHHHHHhh
Q 015764 185 GIVLK-VEDVKAVLALKEYF 203 (401)
Q Consensus 185 GVvl~-~~d~~ev~~l~~~~ 203 (401)
||+++ .++.++++++.+..
T Consensus 94 giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 94 NFLIPFVETAEEARRAVAST 113 (256)
T ss_pred eeeecCcCCHHHHHHHHHHc
Confidence 99996 56788888776654
No 12
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=88.72 E-value=1.7 Score=42.05 Aligned_cols=91 Identities=9% Similarity=0.064 Sum_probs=66.5
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeee---hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeE
Q 015764 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIP---AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGI 186 (401)
Q Consensus 110 ~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIP---lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGV 186 (401)
.+++.+.+.++.-.+.++. . ..|+++++..+=. +- +++++.+.+..+..++..+++.+.. ....+|+.|+|||
T Consensus 13 ~~g~~~~~~~p~~~e~~~~-~-g~D~v~iDlEH~~-~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gI 88 (249)
T TIGR02311 13 QIGLWLGLADPYAAEICAG-A-GFDWLLIDGEHAP-NDVRTILSQLQALAPYPSSPVVRPAIGDPV-LIKQLLDIGAQTL 88 (249)
T ss_pred eEEEEEeCCCcHHHHHHHh-c-CCCEEEEeccCCC-CCHHHHHHHHHHHHhcCCCcEEECCCCCHH-HHHHHhCCCCCEE
Confidence 4678888888877666554 3 4999999776432 23 3445555555456889999887765 5688999999999
Q ss_pred EEe-cCCHHHHHHHHHhhc
Q 015764 187 VLK-VEDVKAVLALKEYFD 204 (401)
Q Consensus 187 vl~-~~d~~ev~~l~~~~~ 204 (401)
+++ .+++++++++.+.+.
T Consensus 89 ivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 89 LVPMIETAEQAEAAVAATR 107 (249)
T ss_pred EecCcCCHHHHHHHHHHcC
Confidence 996 577899988887764
No 13
>PRK05826 pyruvate kinase; Provisional
Probab=88.61 E-value=1.1 Score=47.53 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=89.3
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCC-eeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk-~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
.+++.+.-|++.|+|.++++- .+++.++++.++ +...|. .+..+.+|.+++-++.+-.-+...|-
T Consensus 174 ~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~-------------l~~~~~~~~~iiakIEt~eav~nldeI~~~~Dg 240 (465)
T PRK05826 174 KDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRL-------------LREAGCPHAKIIAKIERAEAVDNIDEIIEASDG 240 (465)
T ss_pred hhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCE
Confidence 478889999999999999985 345555555322 333344 56678899999988887776666888
Q ss_pred EEEeCCCCe-eeehhhhh-------hcccCCCce-EEE----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPDWQ-VIPAENIV-------ASFQGSGKT-VFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~DW~-iIPlENli-------A~~q~~~~~-l~a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
+++-..|-. =+|.|.+- +.....+.- ++| ...+-.|+--...+..-|+|+|+|..+.
T Consensus 241 ImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~ 320 (465)
T PRK05826 241 IMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGK 320 (465)
T ss_pred EEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCc
Confidence 887444432 24555433 333222222 333 4556688888899999999999999553
Q ss_pred --HHHHHHHHHhhc
Q 015764 193 --VKAVLALKEYFD 204 (401)
Q Consensus 193 --~~ev~~l~~~~~ 204 (401)
.+.|+-+.+++.
T Consensus 321 yPveaV~~m~~I~~ 334 (465)
T PRK05826 321 YPVEAVEAMARICK 334 (465)
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666664
No 14
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=87.65 E-value=1.8 Score=42.25 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=32.0
Q ss_pred CCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCHH
Q 015764 157 GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDVK 194 (401)
Q Consensus 157 ~~~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~~d~~ 194 (401)
+.++.+++.+.+++-...+-+++.. |+||+.+-+.|..
T Consensus 143 n~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs 181 (256)
T PRK10558 143 NKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLA 181 (256)
T ss_pred ccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHH
Confidence 4567899999999888888888875 8999999998765
No 15
>PTZ00300 pyruvate kinase; Provisional
Probab=86.72 E-value=2.2 Score=45.23 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=125.0
Q ss_pred eCchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 57 ~~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
+.|++.+.-|++.|+|.+.++- .+++.++++.++. ...|+.+..+.+|.+++-++.+-.-....|-
T Consensus 147 ekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l-------------~~~~~~~~IiaKIEt~eav~nldeI~~~~Dg 213 (454)
T PTZ00300 147 AKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKAL-------------GAKGGDIMIICKIENHQGVQNIDSIIEESDG 213 (454)
T ss_pred hhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH-------------HhcCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 3578889999999999998874 3345555444441 1134556788899999999888877777898
Q ss_pred EEEeCCC-Ceeeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPD-WQVIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~D-W~iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
++|-..| .-=||.|++-+ .+...+.-+|. ...+-.|+--...+.--|+|+|+|..+.
T Consensus 214 ImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~ 293 (454)
T PTZ00300 214 IMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGK 293 (454)
T ss_pred EEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCC
Confidence 8886545 44577777543 22112222332 1234577888888999999999997654
Q ss_pred --HHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCC
Q 015764 193 --VKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIAS 270 (401)
Q Consensus 193 --~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~ 270 (401)
.+.|+-+.+++.+.+.......+-.. .....+ + -+.+.+. +.+|=+ + .
T Consensus 294 yP~eaV~~m~~I~~~aE~~~~~~~~~~~-~~~~~~---------~---~~~~~~~-----------ia~sa~-~---~-- 343 (454)
T PTZ00300 294 YPNEVVQYMARICLEAQSAVNEYVFFNS-IKKLQP---------I---PMSAEEA-----------VCSSAV-N---S-- 343 (454)
T ss_pred CHHHHHHHHHHHHHHHHhhhchhhhhhh-hhcccc---------C---CCChHHH-----------HHHHHH-H---H--
Confidence 35666666766432110000000000 000000 0 0000000 111100 0 0
Q ss_pred CCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCC
Q 015764 271 RPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKG 310 (401)
Q Consensus 271 RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G 310 (401)
-.++||.+.=.|+.. |...+.+|-+|+.-.|+++-.+=
T Consensus 344 -a~~l~a~aIiv~T~s-G~tA~~vs~~RP~~pIia~t~~~ 381 (454)
T PTZ00300 344 -VYETKAKALVVLSNT-GRSARLVAKYRPNCPIVCVTTRL 381 (454)
T ss_pred -HHhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEECCCH
Confidence 025788888888886 88889999999999999987643
No 16
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=86.36 E-value=7.9 Score=37.66 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=68.0
Q ss_pred chhHhHHHHHhCCcEEEEcCcc--hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~--~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
+.-.+..|.+.|+|.+.+.... .+..+++-+.+ ..-|. -+++++.+.++.+++... +++++
T Consensus 122 ~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a-------------~~lGl--~~lvevh~~~E~~~A~~~--gadiI 184 (260)
T PRK00278 122 DPYQIYEARAAGADAILLIVAALDDEQLKELLDYA-------------HSLGL--DVLVEVHDEEELERALKL--GAPLI 184 (260)
T ss_pred CHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHH-------------HHcCC--eEEEEeCCHHHHHHHHHc--CCCEE
Confidence 3446889999999988776432 11111111110 11132 256789999988775532 57888
Q ss_pred EEeCCCCeeee-----hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHH
Q 015764 137 VIDLPDWQVIP-----AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKA 195 (401)
Q Consensus 137 vv~~~DW~iIP-----lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~e 195 (401)
-++.+|-+.-+ .+.|+..+.+ ...+++ ...++++++.++ +.|+|||++-+ +||.+
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~-~~~vIaegGI~t~ed~~~~~---~~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPS-DRLVVSESGIFTPEDLKRLA---KAGADAVLVGESLMRADDPGA 251 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCC-CCEEEEEeCCCCHHHHHHHH---HcCCCEEEECHHHcCCCCHHH
Confidence 88765543332 2444444321 224555 466888887765 56999998754 56643
No 17
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.81 E-value=2.9 Score=38.79 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=57.4
Q ss_pred hhHhHHHHHhCCcEEEEcC---------cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 015764 60 KQVMTAAVERGWNTFVFLS---------ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~---------~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~ 130 (401)
.+.+..|.+.|++.+++.. ...+..+...+. | .+-..+.+.++++...+..
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~-----------------g-~~~iiv~v~t~~ea~~a~~-- 141 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEE-----------------Y-NCLLMADISTLEEALNAAK-- 141 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHH-----------------h-CCeEEEECCCHHHHHHHHH--
Confidence 3478999999999777631 112233333222 1 1123346778877544433
Q ss_pred CCCCeEEEeCCCCe------eeehhhhhhcccC-CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 131 GQAENIVIDLPDWQ------VIPAENIVASFQG-SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 131 ~~~~~vvv~~~DW~------iIPlENliA~~q~-~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
..++++.+...+++ ..|--+.+.++.. .+..+++. +++.++++. +++.|+|||++-+.
T Consensus 142 ~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~---~l~~GadgV~vGsa 208 (219)
T cd04729 142 LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAK---ALELGADAVVVGSA 208 (219)
T ss_pred cCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 25788876432221 1121234443332 23344443 445555555 55579999998754
No 18
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=85.30 E-value=5.1 Score=38.96 Aligned_cols=116 Identities=11% Similarity=0.143 Sum_probs=65.1
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEEE
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vvv 138 (401)
.+.+..+.++|+++++++..-.+...++-+. .++.|...+..+.- ++.+.+..++......-|++-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~-------------~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs 171 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEA-------------AKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS 171 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHH-------------HHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE
Confidence 5789999999999999987533333222211 12334333333333 345565666655433334332
Q ss_pred e--CCCC--ee-eehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 139 D--LPDW--QV-IPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 139 ~--~~DW--~i-IPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
. +++= +. -++.+.|+.+... +..|+. .+++.++++. +.+.|+|||++-+.
T Consensus 172 ~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~---~~~~GADgvVvGSa 229 (256)
T TIGR00262 172 RAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQ---AIDAGADGVIVGSA 229 (256)
T ss_pred CCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH---HHHcCCCEEEECHH
Confidence 1 1121 12 2456777766543 233443 3667777775 77899999999764
No 19
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=84.53 E-value=1 Score=45.57 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=85.0
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
+|++.+.-|++.|+|.+-+.. .+++.+.++.++ +++.|+.+..+.+|.+++-++.+..-+..+|-+
T Consensus 177 kD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~-------------l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgi 243 (348)
T PF00224_consen 177 KDKEDIKFAVENGVDFIALSFVRSAEDVKELRKI-------------LGEKGKDIKIIAKIETKEAVENLDEILEASDGI 243 (348)
T ss_dssp HHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHH-------------HTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHH-------------hhhcCcccceeeccccHHHHhhHHHHhhhcCeE
Confidence 689999999999999776653 224445544443 444556677888999999999888877778999
Q ss_pred EEeCCCCe-eeehhh-------hhhcccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecC-----C
Q 015764 137 VIDLPDWQ-VIPAEN-------IVASFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVE-----D 192 (401)
Q Consensus 137 vv~~~DW~-iIPlEN-------liA~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~-----d 192 (401)
+|...|-- -||+|. ||+.....+.-+|.. ..+-.|.--...+..-|+|||+|..+ -
T Consensus 244 miaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~ 323 (348)
T PF00224_consen 244 MIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKY 323 (348)
T ss_dssp EEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSS
T ss_pred EEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCC
Confidence 99644422 245544 444443334344442 23557788888999999999999943 2
Q ss_pred H-HHHHHHHHhh
Q 015764 193 V-KAVLALKEYF 203 (401)
Q Consensus 193 ~-~ev~~l~~~~ 203 (401)
| +.|+-+.+++
T Consensus 324 p~~~v~~~~~i~ 335 (348)
T PF00224_consen 324 PVEAVKTMARII 335 (348)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 3 5565566655
No 20
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=84.30 E-value=2.9 Score=38.56 Aligned_cols=42 Identities=26% Similarity=0.204 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (401)
.+|..++.|.+||+ ++++.|+|+|+|+.-+|++++++.+.+.
T Consensus 81 ~~I~VEv~~~ee~~---ea~~~g~d~I~lD~~~~~~~~~~v~~l~ 122 (169)
T PF01729_consen 81 KKIEVEVENLEEAE---EALEAGADIIMLDNMSPEDLKEAVEELR 122 (169)
T ss_dssp SEEEEEESSHHHHH---HHHHTT-SEEEEES-CHHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHH---HHHHhCCCEEEecCcCHHHHHHHHHHHh
Confidence 35999999999876 5677999999999999999998877663
No 21
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=84.27 E-value=5.1 Score=37.28 Aligned_cols=92 Identities=23% Similarity=0.336 Sum_probs=60.8
Q ss_pred eEEEEEecChhhhhhhccccCCCCeEEEeCCCCee---------eehhhhhhcc---cCCCceEEEEcCCHHHHH--HHH
Q 015764 111 VGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---------IPAENIVASF---QGSGKTVFAISKTPSEAQ--IFL 176 (401)
Q Consensus 111 v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~i---------IPlENliA~~---q~~~~~l~a~v~~~~eA~--~al 176 (401)
.+.|+...+++-++.+.. ...|+++++..| .+ .=+++++..+ +..+..++..+++.+... --+
T Consensus 2 s~l~vp~~~~~~~~~a~~--~g~D~vilDlEd-~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl 78 (221)
T PF03328_consen 2 SGLFVPANSPKMLEKAAA--SGADFVILDLED-GVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDL 78 (221)
T ss_dssp EEEEEESTSHHHHHHHHT--TCSSEEEEESST-TSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHh--cCCCEEEEeCcc-cCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhh
Confidence 356777778777666553 368999998777 33 2233444333 334458999999976432 112
Q ss_pred HHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 015764 177 EALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (401)
Q Consensus 177 ~~LE~G~DGVvl~-~~d~~ev~~l~~~~~~ 205 (401)
.+|+.|+|||+++ .+++++++++.+.+..
T Consensus 79 ~~l~~g~~gI~lP~ves~~~~~~~~~~~~~ 108 (221)
T PF03328_consen 79 EALDAGADGIVLPKVESAEDARQAVAALRY 108 (221)
T ss_dssp HHHHTTSSEEEETT--SHHHHHHHHHHHSH
T ss_pred hhcccCCCeeeccccCcHHHHHHHHHHHhh
Confidence 2999999999997 4578999888887754
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=83.96 E-value=3.3 Score=40.86 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=83.5
Q ss_pred chhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCC--------------ccccCCCCeeEEEEEecChhhh
Q 015764 59 SKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEG--------------EVYDSGDRRVGSIIEVSTPQEL 123 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g--------------~~~~~~gk~v~~~~~v~~~e~~ 123 (401)
+...++.+|+.|+++||+|- ++++.++++-+-.++.|+-..+- +.+..-+..+.+++.|.+++-+
T Consensus 79 ~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~ 158 (267)
T PRK10128 79 SKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTAL 158 (267)
T ss_pred CHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 56788999999999999995 56788887777777776422110 1122234567788899998877
Q ss_pred hhhcccc--CCCCeEEEeCC----------CCe---ee-ehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 015764 124 QQLQPAD--GQAENIVIDLP----------DWQ---VI-PAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (401)
Q Consensus 124 e~~~~~~--~~~~~vvv~~~----------DW~---iI-PlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (401)
+.+..-. ...+.+.+-.. +|. +. -++.++++....+..+-..+.+.++++-+ +++|.+=|+
T Consensus 159 ~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~~~~~a~~~---~~~G~~~v~ 235 (267)
T PRK10128 159 DNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAVDPDMAQKC---LAWGANFVA 235 (267)
T ss_pred HhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCCCHHHHHHH---HHcCCcEEE
Confidence 7655433 23566665221 122 11 13556665554444444456788777754 689999888
Q ss_pred EecCC
Q 015764 188 LKVED 192 (401)
Q Consensus 188 l~~~d 192 (401)
+..|-
T Consensus 236 ~g~D~ 240 (267)
T PRK10128 236 VGVDT 240 (267)
T ss_pred EChHH
Confidence 77764
No 23
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=83.35 E-value=0.66 Score=40.78 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=10.8
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEE-EeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCC
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVK-IESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGT 361 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~-G~tR~~~VGRvK-IE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~ 361 (401)
|.+++|. +=+.+++.||.||..|.. |+...-.|-++- -+...|+-|+.+ +.. |.--++|==. ..+
T Consensus 2 V~T~~G~-k~Ie~I~~GD~Vls~d~~tg~~~~~~V~~~f~~~~~~l~~i~~~-----~~~---i~~T~~HPF~-~~~--- 68 (130)
T PF07591_consen 2 VHTADGL-KPIEDIKVGDRVLSYDEETGETEYKPVTATFVRETDELVDITLE-----DET---ITTTPNHPFW-VEG--- 68 (130)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccc-----ccc---cccccccccc-cch---
Confidence 5678884 899999999999999954 555444444332 233455555442 211 2222222212 222
Q ss_pred CCCCceeeeeecCCCCEEEEE
Q 015764 362 GEQEKAIPVTSLKVGDEVLLR 382 (401)
Q Consensus 362 ~~~g~~vsVt~LK~GD~VL~~ 382 (401)
+.=+..-+||+||+++..
T Consensus 69 ---~gWv~A~~L~~GD~L~~~ 86 (130)
T PF07591_consen 69 ---KGWVEAEDLKVGDRLLTA 86 (130)
T ss_dssp ------EEGGG--TTSEEEEE
T ss_pred ---HhhhhHhhCCCCCEEEcC
Confidence 345788899999998753
No 24
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=82.68 E-value=5.8 Score=40.42 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=76.1
Q ss_pred EeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 015764 56 WTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (401)
Q Consensus 56 w~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~--- 132 (401)
|.-+.++...|-+-|.-+++.. -+.+...... ..++ .++..+++-+.+ ++++.+++..+...
T Consensus 47 t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~--r~~~-----------~~~l~v~~~vg~-~~~~~~~~~~Lv~ag~~ 111 (326)
T PRK05458 47 TIIDEKIAEWLAENGYFYIMHR-FDPEARIPFI--KDMH-----------EQGLIASISVGV-KDDEYDFVDQLAAEGLT 111 (326)
T ss_pred chhHHHHHHHHHHcCCEEEEec-CCHHHHHHHH--Hhcc-----------ccccEEEEEecC-CHHHHHHHHHHHhcCCC
Confidence 3557999999999999999987 1233322111 1111 123323332222 46666776666543
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~--~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
+|.++|+..+--...+.++|+.+...- .-|++ .+.|.++|+.+ .+.|+|++.+.
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l---~~aGad~i~vg 168 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVREL---ENAGADATKVG 168 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHH---HHcCcCEEEEC
Confidence 499999999988888999999887653 34666 48888887655 46899998855
No 25
>PF14890 Intein_splicing: Intein splicing domain; PDB: 1MI8_A 2CW7_A 2CW8_A.
Probab=82.50 E-value=16 Score=35.86 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=52.1
Q ss_pred eEEEecCC-ceeeeeec--cCCCeEEEEcC-CCCeeEEeeeeEEE-eccceeEEEEEecCCCCeEEEEEeEecceEEEec
Q 015764 282 AYVLVPGG-KTCYLSEL--KSGKEVIVVDQ-KGRQRTAVVGRVKI-ESRPLILVEAKTNSGDQTLYGIILQNAETVALVS 356 (401)
Q Consensus 282 aYv~~pgg-kT~YLSEL--~sG~eVLvVd~-~G~tR~~~VGRvKI-E~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~ 356 (401)
++|..|++ +-.=+.|| ..|.+|+..|. +++.+...|-+++- -.+|+..|+.+ .|+.+.+. ++| +|..
T Consensus 2 t~v~~~~~g~~~~i~ei~~~~~~~V~sl~~~~~k~~~~~v~~v~~~g~k~v~ri~t~----~GreI~~T---~~H-~~lt 73 (323)
T PF14890_consen 2 TLVVLADTGRRVTIKEILEKKDVEVLSLDEDDLKLVKRKVSRVFHNGEKPVYRIRTR----SGREIKAT---PDH-PFLT 73 (323)
T ss_dssp -EEEBTTT--EEESGCCCC-SSEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEEET----TS-EEEEE---TT--EEEE
T ss_pred cEEEeCCCCcEEehhHhhccCCCeEEEEeCCCCEEEEeeeeEEEEcCCceEEEEEeC----CCCEEEEc---CCC-cEEE
Confidence 46677766 77778888 78889999995 78888888877742 12345555543 47765543 233 3334
Q ss_pred CCCCCCCCCceeeeeecCCCCEEEEE
Q 015764 357 PCKGTGEQEKAIPVTSLKVGDEVLLR 382 (401)
Q Consensus 357 p~~g~~~~g~~vsVt~LK~GD~VL~~ 382 (401)
+++ +++ +-+|||||.|.+.
T Consensus 74 ~~~-----wk~--~~~Lk~GD~I~v~ 92 (323)
T PF14890_consen 74 PDG-----WKR--LEELKPGDRIAVP 92 (323)
T ss_dssp CCC-----CCE--CCC--TT-EEEEE
T ss_pred ccC-----CEE--hHHhhcccccccc
Confidence 442 554 5679999999988
No 26
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=82.48 E-value=2.5 Score=41.06 Aligned_cols=131 Identities=11% Similarity=0.190 Sum_probs=80.3
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecC-------------CccccCCCCeeEEEEEecChhhh
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKE-------------GEVYDSGDRRVGSIIEVSTPQEL 123 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~-------------g~~~~~~gk~v~~~~~v~~~e~~ 123 (401)
.+...++.+|+.|+++|+||- ++.+.++++-+-.++.|+-..+ .+.+..-+..+..+..|.+++-+
T Consensus 72 ~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av 151 (249)
T TIGR03239 72 NEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGV 151 (249)
T ss_pred CCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHH
Confidence 467889999999999999995 5678888777777776633211 01222334566788889998877
Q ss_pred hhhcccc--CCCCeEEEeCCC----------Ceeee----hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 015764 124 QQLQPAD--GQAENIVIDLPD----------WQVIP----AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (401)
Q Consensus 124 e~~~~~~--~~~~~vvv~~~D----------W~iIP----lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (401)
+.+.... ...+.+.+-..| +.--+ .+.++.+....+..+-....+.++++.+ +++|.+=++
T Consensus 152 ~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~~~~~~~~~---~~~G~~~~~ 228 (249)
T TIGR03239 152 DNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAPVEADARRY---LEWGATFVA 228 (249)
T ss_pred HhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCCCHHHHHHH---HHcCCCEEE
Confidence 7654433 346677763322 12111 2333444333333343445677666655 689998777
Q ss_pred EecC
Q 015764 188 LKVE 191 (401)
Q Consensus 188 l~~~ 191 (401)
+..|
T Consensus 229 ~~~D 232 (249)
T TIGR03239 229 VGSD 232 (249)
T ss_pred EhHH
Confidence 7665
No 27
>PTZ00066 pyruvate kinase; Provisional
Probab=82.44 E-value=4.8 Score=43.53 Aligned_cols=208 Identities=15% Similarity=0.156 Sum_probs=124.5
Q ss_pred CchhHh-HHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
.||+.+ .-|++-|+|.+-... .+++.+.++.++ +++.|+.+..+.+|.+++-++.+..-+..+|-
T Consensus 210 kD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~-------------l~~~g~~~~IiAKIE~~~av~NldeIl~~sDG 276 (513)
T PTZ00066 210 KDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQL-------------LGERGRHIKIIPKIENIEGLINFDEILAESDG 276 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCceEEEEECCHHHHHHHHHHHHhcCE
Confidence 467776 899999999544332 224444444443 33345566788899999999998888888999
Q ss_pred EEEeCCCCee-eehhhhh-------hcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPDWQV-IPAENIV-------ASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~DW~i-IPlENli-------A~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
++|...|--+ ||+|++- ......+.-+|. ...+-+|+--.+.+..-|+|||+|..+.
T Consensus 277 IMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~ 356 (513)
T PTZ00066 277 IMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGK 356 (513)
T ss_pred EEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCc
Confidence 9996666554 7888753 222222222332 2345578888899999999999997664
Q ss_pred --HHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEecc-CceEEEEeeccccCCCCC
Q 015764 193 --VKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSF-ARGLFLVHSECLESNYIA 269 (401)
Q Consensus 193 --~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~-s~glFLVhsEt~es~Yva 269 (401)
.+.|+-+.+++.+. +.. +... .++..... ..... +..-.+.++=+.
T Consensus 357 yPveaV~~m~~I~~~a-E~~--~~~~---------------------~~~~~~~~-~~~~~~~~~~~ia~aa~~------ 405 (513)
T PTZ00066 357 FPVEAVNIMAKICFEA-ETC--IDYR---------------------VLYHAIHL-AVPTPVSVQEAVARSAVE------ 405 (513)
T ss_pred CHHHHHHHHHHHHHHH-hhc--cchH---------------------Hhhhhhhc-cccCCCchhhHHHHHHHH------
Confidence 35566666766432 111 1000 00000000 00000 000000000000
Q ss_pred CCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCC
Q 015764 270 SRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGR 311 (401)
Q Consensus 270 ~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~ 311 (401)
--..+||.+.=+|+.. |..++.+|-.++--.|+++-.+=+
T Consensus 406 -~A~~l~a~aIv~~T~S-G~TAr~iSk~RP~~pIia~t~~~~ 445 (513)
T PTZ00066 406 -TAEDINAKLIIALTET-GNTARLISKYRPSCTILALSASPS 445 (513)
T ss_pred -HHHhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEECCCHH
Confidence 0135788899999886 888899999999999999887543
No 28
>PRK11479 hypothetical protein; Provisional
Probab=82.12 E-value=0.8 Score=45.75 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=34.8
Q ss_pred EEEecCCCCCCCCCceeeeeecCCCCEEEEEe------------cCCCcccceee-eeEEee
Q 015764 352 VALVSPCKGTGEQEKAIPVTSLKVGDEVLLRV------------QGAARHTGIEI-QEFIVE 400 (401)
Q Consensus 352 IRLv~p~~g~~~~g~~vsVt~LK~GD~VL~~~------------~~~gRHfG~~I-~E~I~E 400 (401)
+++-.....+..+|++|+..+|||||-|+... ...--|+||-+ ++.++|
T Consensus 44 ~~~pr~s~~q~~~g~~Vs~~~LqpGDLVFfst~t~~S~~Ik~~T~s~~SHVgIylGdg~vIE 105 (274)
T PRK11479 44 VKFQHQSSFTEQGIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIYLGENNVAE 105 (274)
T ss_pred eecCcccHHHHhCCcccChhhCCCCCEEEEecCCccccceecccCCCCcEEEEEecCCeEEE
Confidence 44444443344468899999999999999752 23446999999 556666
No 29
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.04 E-value=2.7 Score=41.69 Aligned_cols=52 Identities=10% Similarity=0.111 Sum_probs=40.5
Q ss_pred hhhhhcccCC---CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 149 ENIVASFQGS---GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 149 ENliA~~q~~---~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
++.|.++... ..+|.+++.|.+||+.+ +|.|+|.|+|+.-++++++++.+.+
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A---~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNA---MNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4444444332 25799999999998765 5799999999999999999888765
No 30
>PLN02591 tryptophan synthase
Probab=81.83 E-value=5.5 Score=39.00 Aligned_cols=117 Identities=12% Similarity=0.128 Sum_probs=63.3
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEE-ecChhhhhhhccccCCCCeEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIE-VSTPQELQQLQPADGQAENIV 137 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~-v~~~e~~e~~~~~~~~~~~vv 137 (401)
-.+.+..|-|+|+|++|+++=-.+...++.... ++.|-....++. -++.+.+..++......=|+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~-------------~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V 161 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAEA-------------AKNGIELVLLTTPTTPTERMKAIAEASEGFVYLV 161 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH-------------HHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEe
Confidence 467899999999999999863222222222221 122222223332 233455566665543333333
Q ss_pred Ee--CCCCe-eee--hhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 138 ID--LPDWQ-VIP--AENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 138 v~--~~DW~-iIP--lENliA~~q~~-~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
=. .++.+ -+| +++.++.+.+. +..|+ ..+++.++++. +++.|+|||++-+.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~---~~~~GADGvIVGSa 220 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQ---IAGWGADGVIVGSA 220 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHH---HHhcCCCEEEECHH
Confidence 21 12221 223 45666666542 22333 34677777774 78899999999773
No 31
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=81.60 E-value=4.9 Score=39.52 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=64.3
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~~~~~~~vv 137 (401)
-.+.+..|-++|+|+++++..-.+...++... .++.|.....++.-++ .+.++.++......=|+|
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~-------------~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~v 174 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPYEESDYLISV-------------CNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLV 174 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH-------------HHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 46789999999999999987433333332222 1223433344444444 455556555443222322
Q ss_pred E--eCCCC-eeee--hhhhhhcccCC-CceE--EEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 138 I--DLPDW-QVIP--AENIVASFQGS-GKTV--FAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 138 v--~~~DW-~iIP--lENliA~~q~~-~~~l--~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
= -.++= +-+| +.++++.+... +..| =-.+++.++|+. +.+.|+|||++-+.
T Consensus 175 S~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~---~~~~GADGvVVGSa 233 (263)
T CHL00200 175 STTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQ---IKGWNINGIVIGSA 233 (263)
T ss_pred cCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH---HHhcCCCEEEECHH
Confidence 1 01111 1223 55666655432 1112 234677777775 67899999998774
No 32
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=81.31 E-value=7.4 Score=36.10 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=58.1
Q ss_pred chhHhHHHHHhCCcEEEEcCc--------c-hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 015764 59 SKQVMTAAVERGWNTFVFLSE--------N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~--------~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 129 (401)
..+.+..|.|.|+|.++.... + .+..+...+. .+.. ....+.+.++...+..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~----------------~~i~--vi~~v~t~ee~~~a~~- 137 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY----------------PGQL--LMADCSTLEEGLAAQK- 137 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC----------------CCCe--EEEeCCCHHHHHHHHH-
Confidence 456689999999996554321 1 1222222220 1222 3346778777654332
Q ss_pred cCCCCeEEEeCCCCe------eeehhhhhhcccCC-CceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 130 DGQAENIVIDLPDWQ------VIPAENIVASFQGS-GKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 130 ~~~~~~vvv~~~DW~------iIPlENliA~~q~~-~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
..++++.+...+.+ .-+.-+++.++... +..+++ .++++++++. +++.|+|||++-+.
T Consensus 138 -~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~---~l~~GadgV~iGsa 204 (221)
T PRK01130 138 -LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKK---ALELGAHAVVVGGA 204 (221)
T ss_pred -cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHH---HHHCCCCEEEEchH
Confidence 24788876432221 11223344444322 334444 3556666664 56689999998754
No 33
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=81.29 E-value=2 Score=37.72 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccceeeeeEE
Q 015764 169 PSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSNLLSLMKA 218 (401)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~d~~-------------ev~~l~~~~~~~~~~~~~l~L~~a 218 (401)
-=+....+.+|++|+|||++..-.++ -+..+++++++...+.+++.+...
T Consensus 39 rv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~ 101 (124)
T PF02662_consen 39 RVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWI 101 (124)
T ss_pred ccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEe
Confidence 35678899999999999999433222 245556666555555555555443
No 34
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=80.61 E-value=8.1 Score=35.89 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=36.3
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 015764 278 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 334 (401)
Q Consensus 278 GaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~ 334 (401)
|-..=.|..-|.-|+||.+++.||+|.+-...|+.-. .+ .+|+++|=+-.
T Consensus 49 ~~l~~~v~~~G~~s~~L~~l~~Gd~v~i~gP~G~~f~-----~~--~~~~vliAgGt 98 (233)
T cd06220 49 GPNSITVKKVGEATSALHDLKEGDKLGIRGPYGNGFE-----LV--GGKVLLIGGGI 98 (233)
T ss_pred CeEEEEEEecChHHHHHHhcCCCCEEEEECcCCCCcc-----CC--CCeEEEEecCc
Confidence 3344445556888999999999999999888887321 12 68999886543
No 35
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=80.41 E-value=15 Score=37.43 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=75.4
Q ss_pred eccCCCCCCCCCcEEEEEeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEec
Q 015764 39 MCSVSNSSSSKPKRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS 118 (401)
Q Consensus 39 ~~~~~~~~~~~~K~vWiw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~ 118 (401)
|..|+.-..-....=|.|--...-+.+-.++++|-+++++.+. ..+-+.. ++ ..=..++..|+.+-.|+.|.
T Consensus 33 ~~~~~~~~~~~~~~~W~~ql~~~~~~~i~~~~~d~vVID~~~~--g~~~~~f---s~---~~i~~Lk~~g~~viaYlSvG 104 (315)
T TIGR01370 33 MTPPSKKPALSAVQHWGYQLQNADLNEIHTSPFELVVIDYSKD--GTEDGTY---SP---EEIVRAAAAGRWPIAYLSIG 104 (315)
T ss_pred cCCccccccccccceEEEEeCCCChhhhhccCCCEEEEccccc--cCcccCC---CH---HHHHHHHhCCcEEEEEEEch
Confidence 4333333333344567776444334444578999999987531 0000000 00 00012345688888999988
Q ss_pred ChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHH----HHHhhcccCeEEEecCCH
Q 015764 119 TPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIF----LEALEQGLGGIVLKVEDV 193 (401)
Q Consensus 119 ~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~a----l~~LE~G~DGVvl~~~d~ 193 (401)
.-|+-..-. ..+|+.+|.+-|+..-.+=.+.-+.-..+++=-..+ -.++++|.|||.|++=|.
T Consensus 105 e~E~~R~y~------------~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 105 AAEDYRFYW------------QKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred hccccchhh------------hhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 776611111 226777888878776555444555566665433333 345689999999987554
No 36
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=80.07 E-value=9.1 Score=37.19 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=59.1
Q ss_pred eEEEEEEEEEcCCc-ceEEEeecC------C-CCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCcee
Q 015764 216 MKATVTRVDVAGMG-DRVCVDLCS------L-MRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHA 282 (401)
Q Consensus 216 ~~atVt~V~~vGmG-DRVCVDtcs------l-l~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNA-----GaVHa 282 (401)
-+++|++++++.-. ...++..-. + ++||+=+.| -.... ..|||-+-. |-+.=
T Consensus 6 ~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l---------~~~~~------~~~pySias~p~~~~~l~l 70 (289)
T PRK08345 6 HDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQV---------TIPGV------GEVPISICSSPTRKGFFEL 70 (289)
T ss_pred eeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEE---------EcCCC------CceeeEecCCCCCCCEEEE
Confidence 35888888888765 455665321 1 456653333 11111 124555422 33444
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 283 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 283 Yv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|..-|.-|.||..|+.||+|.+-...|+.-. .- ..+.+|+++|=+
T Consensus 71 ~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f~--~~--~~~~~~~llIAg 116 (289)
T PRK08345 71 CIRRAGRVTTVIHRLKEGDIVGVRGPYGNGFP--VD--EMEGMDLLLIAG 116 (289)
T ss_pred EEEeCChHHHHHHhCCCCCEEEEeCCCCCCCC--cc--cccCceEEEEec
Confidence 45556889999999999999999998887321 10 123579998865
No 37
>PRK05826 pyruvate kinase; Provisional
Probab=79.18 E-value=15 Score=39.25 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHhhcccCeEEEe-cCCHHHHHHHHHhhcc
Q 015764 168 TPSEAQIFLEALEQGLGGIVLK-VEDVKAVLALKEYFDG 205 (401)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~-~~d~~ev~~l~~~~~~ 205 (401)
+..|.+....+|+.|+|||.++ .++++++++++++++.
T Consensus 172 te~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~ 210 (465)
T PRK05826 172 TEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLRE 210 (465)
T ss_pred ChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 3567777788999999999998 7889999999999854
No 38
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=78.81 E-value=29 Score=32.08 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=65.5
Q ss_pred EEEEEe--CchhHhHHHHHhCCcEEEEcCcc---h----hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh
Q 015764 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN---Q----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (401)
Q Consensus 52 ~vWiw~--~~K~~vt~AlEsG~~~~v~~~~~---~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~ 122 (401)
.+|+.- .+-+.+..+++.|+|.+++.... . +.++.+++-..+-++.+.++..+...+.. ..-.++.+
T Consensus 75 pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~----~~~~~~~~ 150 (234)
T cd04732 75 PVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLE----TSEVSLEE 150 (234)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCee----ecCCCHHH
Confidence 355544 57888999999999999987632 2 23334443223333444455433221110 00112222
Q ss_pred hhhhccccCCCCeEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 123 LQQLQPADGQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~D----W~iIPlENliA~~-q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+-..... ..++.+++...+ -+-+++| ++.++ +..+..+++ .+.+.++++.++. .|+|||++-+.
T Consensus 151 ~~~~~~~-~ga~~iii~~~~~~g~~~g~~~~-~i~~i~~~~~ipvi~~GGi~~~~di~~~~~---~Ga~gv~vg~~ 221 (234)
T cd04732 151 LAKRFEE-LGVKAIIYTDISRDGTLSGPNFE-LYKELAAATGIPVIASGGVSSLDDIKALKE---LGVAGVIVGKA 221 (234)
T ss_pred HHHHHHH-cCCCEEEEEeecCCCccCCCCHH-HHHHHHHhcCCCEEEecCCCCHHHHHHHHH---CCCCEEEEeHH
Confidence 2221111 236666665321 1112222 22222 122344544 4688888887665 49999998653
No 39
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=78.39 E-value=9.7 Score=38.83 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=68.0
Q ss_pred eCchhHhHHHHHhCCcEEEEcCcchhh-HhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 015764 57 TESKQVMTAAVERGWNTFVFLSENQQL-AIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (401)
Q Consensus 57 ~~~K~~vt~AlEsG~~~~v~~~~~~~~-~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~--- 132 (401)
.-+.++...|-|-|.-+++..- +.|. .+... .+ +.++..++. .-=.++++++++..+...
T Consensus 45 ~in~~LA~~a~~~G~~~i~hK~-~~E~~~sfvr---k~-----------k~~~L~v~~-SvG~t~e~~~r~~~lv~a~~~ 108 (321)
T TIGR01306 45 IIDEKLAEQLAENGYFYIMHRF-DEESRIPFIK---DM-----------QERGLFASI-SVGVKACEYEFVTQLAEEALT 108 (321)
T ss_pred hhhHHHHHHHHHcCCEEEEecC-CHHHHHHHHH---hc-----------cccccEEEE-EcCCCHHHHHHHHHHHhcCCC
Confidence 4579999999999999999872 2222 22211 11 112222222 122367777887776654
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCC--ceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 015764 133 AENIVIDLPDWQVIPAENIVASFQGSG--KTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~--~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
.|+++++...=--..+-+.|..+...- .-+++. +.+.+.|+.+ ++.|+|||.+.
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l---~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVREL---ENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHH---HHcCcCEEEEC
Confidence 499999876444445555555554321 224444 6666666655 57899999877
No 40
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=77.48 E-value=5.3 Score=31.96 Aligned_cols=88 Identities=25% Similarity=0.279 Sum_probs=49.4
Q ss_pred EEEEEEEEEcCCcc---eEEEeec---CCCCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEe-cC
Q 015764 217 KATVTRVDVAGMGD---RVCVDLC---SLMRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLV-PG 288 (401)
Q Consensus 217 ~atVt~V~~vGmGD---RVCVDtc---sll~~GEGmLVGS~s~glFLVhsEt~es~Y-va~RPFRVNAGaVHaYv~~-pg 288 (401)
+|+|++++.+.-.= |...+.. --+.||+=+.|.-... .+....|| +++.| =+.|-.+=.|.. |+
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~------~~~~~R~yS~~s~~--~~~~~~~~~ik~~~~ 72 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPIN------GKQVSRPYSPASSP--DDKGYLEFAIKRYPN 72 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEET------TEEEEEEEEBCSST--TSSSEEEEEEEECTT
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccC------CcceecceeEeeec--CCCCcEEEEEEeccC
Confidence 57888888887432 3333322 2256666544432211 12223444 23333 133445445554 44
Q ss_pred C-ceeeeeeccCCCeEEEEcCCCCe
Q 015764 289 G-KTCYLSELKSGKEVIVVDQKGRQ 312 (401)
Q Consensus 289 g-kT~YLSEL~sG~eVLvVd~~G~t 312 (401)
| -|+||.+|+.||+|.+-...|+.
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gP~G~f 97 (99)
T PF00970_consen 73 GRVSRYLHQLKPGDEVEIRGPYGNF 97 (99)
T ss_dssp SHHHHHHHTSCTTSEEEEEEEESSE
T ss_pred CHHHHHHHhCCCCCEEEEEEccccc
Confidence 4 68899999999999998887764
No 41
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=76.81 E-value=32 Score=31.93 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=64.8
Q ss_pred hhHhHHHHHhCCcEEEEcCc-chhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEE
Q 015764 60 KQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIV 137 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~-~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vv 137 (401)
+++..++.+.|+.++.+... ..+.+++...+-.+..+. +|-. +..+ -+. ..++.+.+.. ..++.++
T Consensus 26 ~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~-~d~~-----~~~~----~~~~~~~~v~~a~~--aGad~I~ 93 (221)
T PRK01130 26 AAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIK-RDYP-----DSEV----YITPTLKEVDALAA--AGADIIA 93 (221)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEe-cCCC-----CCCc----eECCCHHHHHHHHH--cCCCEEE
Confidence 77888888999998887541 122333333332221111 1100 1111 121 2334333322 2567777
Q ss_pred EeCCC---CeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 138 IDLPD---WQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 138 v~~~D---W~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
+.... ..-..++.++..++. .+-.+++.+.+.+|++ .+.+.|+|-+.+.
T Consensus 94 ~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t~ee~~---~a~~~G~d~i~~~ 146 (221)
T PRK01130 94 LDATLRPRPDGETLAELVKRIKEYPGQLLMADCSTLEEGL---AAQKLGFDFIGTT 146 (221)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCCHHHHH---HHHHcCCCEEEcC
Confidence 74332 111456678888877 6778999999999985 5678899988763
No 42
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=76.70 E-value=1.7 Score=41.10 Aligned_cols=31 Identities=39% Similarity=0.625 Sum_probs=26.5
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 015764 365 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 395 (401)
Q Consensus 365 g~~vsVt~LK~GD~VL~~~~~~gRHfG~~I~ 395 (401)
|++|+..+|+|||-|+.+....++|+||-|.
T Consensus 121 g~~V~~~~lqpGDLVfF~~~~~~~HVGIyiG 151 (190)
T PRK10838 121 GKSVSRSKLRTGDLVLFRAGSTGRHVGIYIG 151 (190)
T ss_pred CcCcccCCCCCCcEEEECCCCCCCEEEEEec
Confidence 5678899999999999887666789999883
No 43
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=76.42 E-value=12 Score=38.52 Aligned_cols=101 Identities=17% Similarity=0.263 Sum_probs=62.3
Q ss_pred CchhHhHHHHHh---CCcEEEEcCcchhhHhhccceeeeeeeeecC-CccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 015764 58 ESKQVMTAAVER---GWNTFVFLSENQQLAIDWSTIALLDPLFIKE-GEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (401)
Q Consensus 58 ~~K~~vt~AlEs---G~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~-g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 133 (401)
+..+.+.+|=+- |+..+.+..+|...++.+..++-+ .+.- +..+. .|+ -|.+|+.++.+....
T Consensus 182 d~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~---avmPl~~pIG-sg~------gv~~p~~i~~~~e~~--- 248 (326)
T PRK11840 182 DMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAV---AVMPLGAPIG-SGL------GIQNPYTIRLIVEGA--- 248 (326)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCE---EEeecccccc-CCC------CCCCHHHHHHHHHcC---
Confidence 356778888887 888877777777777777766432 2211 22222 222 255777766665531
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHH
Q 015764 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 197 (401)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev~ 197 (401)
+ +| .=+=|...+++||.. ++|.|+|||++.+ +||-...
T Consensus 249 ~-----------vp------------VivdAGIg~~sda~~---AmelGadgVL~nSaIa~a~dPv~Ma 291 (326)
T PRK11840 249 T-----------VP------------VLVDAGVGTASDAAV---AMELGCDGVLMNTAIAEAKNPVLMA 291 (326)
T ss_pred C-----------Cc------------EEEeCCCCCHHHHHH---HHHcCCCEEEEcceeccCCCHHHHH
Confidence 0 11 112356778888765 6789999999876 6775543
No 44
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=76.19 E-value=2.7 Score=41.88 Aligned_cols=51 Identities=18% Similarity=0.325 Sum_probs=37.8
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+.++..+. .|.+.++..++..+.+++..|.|+++|+. +++.|+|+|++.--
T Consensus 115 ~~v~~~~G----~p~~~~i~~l~~~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG~ 165 (330)
T PF03060_consen 115 DVVSFGFG----LPPPEVIERLHAAGIKVIPQVTSVREARK---AAKAGADAIVAQGP 165 (330)
T ss_dssp SEEEEESS----SC-HHHHHHHHHTT-EEEEEESSHHHHHH---HHHTT-SEEEEE-T
T ss_pred EEEEeecc----cchHHHHHHHHHcCCccccccCCHHHHHH---hhhcCCCEEEEecc
Confidence 34555443 47788899999999999999999999986 57789999999843
No 45
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=76.12 E-value=7 Score=38.96 Aligned_cols=112 Identities=11% Similarity=0.145 Sum_probs=68.1
Q ss_pred CchhHhHHHHHhCCcEEEEcCc-c-hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc-cCCCC
Q 015764 58 ESKQVMTAAVERGWNTFVFLSE-N-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-DGQAE 134 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~-~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~-~~~~~ 134 (401)
.+.+++.+.-+.|.=+++-... + .++.+++..+... .++++++-+-...+...+.+... ..+.+
T Consensus 23 s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~-------------t~~pfgvn~~~~~~~~~~~~~~~~~~~v~ 89 (307)
T TIGR03151 23 ATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKEL-------------TDKPFGVNIMLLSPFVDELVDLVIEEKVP 89 (307)
T ss_pred CCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHh-------------cCCCcEEeeecCCCCHHHHHHHHHhCCCC
Confidence 4688999999999888875321 1 1232333333211 13455554434334332332322 23455
Q ss_pred eEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 135 NIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 135 ~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
.+.+.+. .|-+ ++.+++..+.++++.+.+.++|+.+. +.|+|+|++..
T Consensus 90 ~v~~~~g----~p~~-~i~~lk~~g~~v~~~v~s~~~a~~a~---~~GaD~Ivv~g 137 (307)
T TIGR03151 90 VVTTGAG----NPGK-YIPRLKENGVKVIPVVASVALAKRME---KAGADAVIAEG 137 (307)
T ss_pred EEEEcCC----CcHH-HHHHHHHcCCEEEEEcCCHHHHHHHH---HcCCCEEEEEC
Confidence 5555432 3544 88999888889999999999986554 66999999855
No 46
>PLN02762 pyruvate kinase complex alpha subunit
Probab=75.63 E-value=9.9 Score=41.11 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=90.2
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCC--CeeEEEEEecChhhhhhhccccCCCC
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD--RRVGSIIEVSTPQELQQLQPADGQAE 134 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~g--k~v~~~~~v~~~e~~e~~~~~~~~~~ 134 (401)
+||+.+.-|++-|+|.+-+.. .+++.++++.++ +++.| ..+..+.+|.+++-++.+..-...+|
T Consensus 204 kD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~-------------l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sD 270 (509)
T PLN02762 204 KDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSY-------------IAARSRDSDIGVIAKIESLDSLKNLEEIIRASD 270 (509)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcC
Confidence 578889999999999655442 224444444443 22222 24567789999999999888888899
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC---
Q 015764 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (401)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d--- 192 (401)
-++|...|--+ ||+|++-. .....+.-+|. ...+-.|+--...+.--|+|+|+|..+.
T Consensus 271 giMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G 350 (509)
T PLN02762 271 GAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMG 350 (509)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCC
Confidence 99997666654 88888643 22112222332 1345578888889999999999999664
Q ss_pred ---HHHHHHHHHhhc
Q 015764 193 ---VKAVLALKEYFD 204 (401)
Q Consensus 193 ---~~ev~~l~~~~~ 204 (401)
.+.|+-+.+++.
T Consensus 351 ~yPveaV~~m~~I~~ 365 (509)
T PLN02762 351 LYPEKALSVLRSVSL 365 (509)
T ss_pred CCHHHHHHHHHHHHH
Confidence 356666666664
No 47
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.41 E-value=5.3 Score=40.00 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=36.7
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (401)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 195 ~kIeVEv~tleea~ea---~~~gaDiI~LDn~s~e~l~~av~~~~ 236 (281)
T PRK06106 195 VKIEVEVDTLDQLEEA---LELGVDAVLLDNMTPDTLREAVAIVA 236 (281)
T ss_pred CcEEEEeCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHhC
Confidence 5799999999998755 58999999999999999988877663
No 48
>PRK05713 hypothetical protein; Provisional
Probab=75.33 E-value=22 Score=34.80 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=28.8
Q ss_pred ecCCc-eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 286 VPGGK-TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 286 ~pggk-T~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|+|+ |.||.+|+.||+|.+-...|.. ... +-....||++||=+
T Consensus 156 ~~~G~~s~~l~~l~~Gd~v~l~~p~gg~--~~~-~~~~~~~~~vlIAg 200 (312)
T PRK05713 156 SRPGAFCDAARQLQVGDLLRLGELRGGA--LHY-DPDWQERPLWLLAA 200 (312)
T ss_pred cCCCccchhhhcCCCCCEEEEccCCCCc--eEe-cCCCCCCcEEEEec
Confidence 36665 8899999999999976666521 000 11123589998854
No 49
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=74.94 E-value=38 Score=32.73 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=71.9
Q ss_pred HHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEE-------------Eec-cCceEEEEee
Q 015764 195 AVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLL-------------VGS-FARGLFLVHS 260 (401)
Q Consensus 195 ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmL-------------VGS-~s~glFLVhs 260 (401)
|-.+|++.+..... ...++..|+|..-.+-+..+.+-||-.+.=.--.||. |+. +|+-+.+.+.
T Consensus 101 en~~L~~lL~~~~~--~~~~~i~A~Vi~~~~~~~~~~i~Id~G~~~Gv~~g~~Vv~~~GlVG~V~~v~~~~s~V~li~d~ 178 (276)
T PRK13922 101 ENARLRELLNLKES--LDYQFITARVISRSPDPWSQQVTIDKGSNDGVKKGMPVIDPGGLVGRVIEVSPNTSRVLLLTDP 178 (276)
T ss_pred HHHHHHHHhcCccc--CCCceEEEEEEEeCCCCceeEEEEccCcccCCCCCCceEcCCCCeEEEEEECCCeeEEEEEEcC
Confidence 44556666543222 2268999999999999999999999877655545554 344 3444444444
Q ss_pred ccccCCCCCCCCeeeecCCceeEEEecCC----ceeee---eeccCCCeEEEEcCCCCeeE-EeeeeEE
Q 015764 261 ECLESNYIASRPFRVNAGPVHAYVLVPGG----KTCYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK 321 (401)
Q Consensus 261 Et~es~Yva~RPFRVNAGaVHaYv~~pgg----kT~YL---SEL~sG~eVLvVd~~G~tR~-~~VGRvK 321 (401)
++. =|.++.--.....+.--|. .-+|+ .+++.||.|..-+.+|--=. .+||+|+
T Consensus 179 ~~~-------v~v~i~~~~~~gi~~G~g~~~~l~l~~i~~~~~i~~GD~VvTSGl~g~fP~Gi~VG~V~ 240 (276)
T PRK13922 179 NSR-------VPVQVGRNGIRGILSGNGSGDNLKLEFIPRSADIKVGDLVVTSGLGGIFPAGLPVGKVT 240 (276)
T ss_pred CCc-------eEEEEEcCCceEEEEecCCCCceEEEecCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 331 2444421112222222111 44566 67999999999888875443 7899986
No 50
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.62 E-value=6.2 Score=39.79 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=36.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+
T Consensus 197 ~~kIeVEv~tleea~~a---~~agaDiImLDnmspe~l~~av~~~ 238 (290)
T PRK06559 197 VKMVEVEVESLAAAEEA---AAAGADIIMLDNMSLEQIEQAITLI 238 (290)
T ss_pred CCeEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 36899999999998765 4789999999999999999887765
No 51
>PLN02623 pyruvate kinase
Probab=74.51 E-value=9.2 Score=42.05 Aligned_cols=135 Identities=16% Similarity=0.207 Sum_probs=88.8
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
.|++.+.-|++-|+|.+-+.- .+++.++++.+. +...|..+..+.+|.+++-++.+..-+...|-+
T Consensus 279 kD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~-------------l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgI 345 (581)
T PLN02623 279 KDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDY-------------LKSCNADIHVIVKIESADSIPNLHSIITASDGA 345 (581)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCcceEEEEECCHHHHHhHHHHHHhCCEE
Confidence 578889999999999654432 224444444443 223345567888999999988887777788988
Q ss_pred EEeCCC-Ceeeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 015764 137 VIDLPD-WQVIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (401)
Q Consensus 137 vv~~~D-W~iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (401)
+|-..| .-=||+|.+.+ +....+.-++. ...+-.|+.-+..+++.|+|+|+|..+.
T Consensus 346 mIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~y 425 (581)
T PLN02623 346 MVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF 425 (581)
T ss_pred EECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcC
Confidence 885444 33466665433 33223333332 2334468888999999999999999763
Q ss_pred -HHHHHHHHHhhcc
Q 015764 193 -VKAVLALKEYFDG 205 (401)
Q Consensus 193 -~~ev~~l~~~~~~ 205 (401)
.+.|+-+.+++.+
T Consensus 426 PveaV~~m~~I~~~ 439 (581)
T PLN02623 426 PLKAVKVMHTVALR 439 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 3566666776643
No 52
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=74.24 E-value=19 Score=33.15 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=58.7
Q ss_pred CchhHhHHHHHhCCcEEEEcCcc-hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 58 ESKQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
...+.+..|.+.|+|.+.++... .+..+.+.+ .+..+ ...+.+.++...+.. ..++++
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~-----------------~~i~~--i~~v~~~~~~~~~~~--~gad~i 126 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA-----------------AGIKV--IPTVTSVEEARKAEA--AGADAL 126 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH-----------------cCCEE--EEeCCCHHHHHHHHH--cCCCEE
Confidence 56778999999999999987532 222222221 12222 234556666555443 247888
Q ss_pred EEeCCC------Ceeeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 137 VIDLPD------WQVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 137 vv~~~D------W~iIPlENliA~~q-~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
++.... ....+...++.++. ..+..+++ .+++.++++. +++.|+|||++.+.
T Consensus 127 ~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~---~l~~GadgV~vgS~ 187 (236)
T cd04730 127 VAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAA---ALALGADGVQMGTR 187 (236)
T ss_pred EEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHH---HHHcCCcEEEEchh
Confidence 875421 11012223333322 11233443 3445555554 45689999999754
No 53
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=73.96 E-value=5.4 Score=27.69 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=20.3
Q ss_pred EEEEEe-CchhHhHHHHHhCCcEEEEc
Q 015764 52 RVWIWT-ESKQVMTAAVERGWNTFVFL 77 (401)
Q Consensus 52 ~vWiw~-~~K~~vt~AlEsG~~~~v~~ 77 (401)
+|-+|+ ++.+.++.++..|+|+|+.+
T Consensus 1 kV~~WT~d~~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 1 KVYFWTPDKPASWRELLDLGVDGIMTD 27 (30)
T ss_dssp EEEEET--SHHHHHHHHHHT-SEEEES
T ss_pred CeEEecCCCHHHHHHHHHcCCCEeeCC
Confidence 366788 57889999999999999864
No 54
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.85 E-value=2.8 Score=38.98 Aligned_cols=93 Identities=26% Similarity=0.453 Sum_probs=54.9
Q ss_pred EEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCce-eEEEecCCce---ee
Q 015764 218 ATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVH-AYVLVPGGKT---CY 293 (401)
Q Consensus 218 atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGaVH-aYv~~pggkT---~Y 293 (401)
.+|..|-. + |.|.|. |+.+.|.|.=+.-.+-+| |.- .+.| -|||=.+-=- -|+ -.||. +|
T Consensus 40 GRiRqV~~-~-G~~~~t-----~Ra~DG~~tL~~~Ga~~L-~~~-l~~P-----~~RVvV~~E~e~f~--r~Gk~VFaKf 103 (155)
T COG1370 40 GRIRQVFV-D-GERIAT-----VRANDGLFTLTIEGARRL-HRA-LPFP-----RMRVVVSDEAEEFV--RKGKSVFAKF 103 (155)
T ss_pred CceEEEEE-C-CEEEEE-----EEcCCceEEechhhhHHH-Hhc-CCCC-----ceEEEeccccHHHH--Hhccchhhhh
Confidence 34444432 5 999885 788888887666555554 332 1222 2444222100 011 01221 11
Q ss_pred e----eeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 015764 294 L----SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (401)
Q Consensus 294 L----SEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLl 328 (401)
. .||++|||||+||.+++- .-|||+-+-.+-|.
T Consensus 104 Vi~~D~~iR~~dEvlVVne~d~L--lAvGra~ls~~E~~ 140 (155)
T COG1370 104 VIDVDEEIRAGDEVLVVNEDDEL--LAVGRALLSGAEMR 140 (155)
T ss_pred eeccCcccCCCCeEEEECCCCcE--EEeeeEeecHHHHh
Confidence 1 589999999999999866 88999987766665
No 55
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=73.78 E-value=31 Score=33.48 Aligned_cols=92 Identities=11% Similarity=0.136 Sum_probs=56.2
Q ss_pred cEEEEEeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 015764 51 KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (401)
Q Consensus 51 K~vWiw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~ 130 (401)
--.|++..+..++..+..+|+|.++++-||.- .+.+++..+....
T Consensus 14 ~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~-----------------------------------~~~~~~~~~~~a~ 58 (249)
T TIGR02311 14 IGLWLGLADPYAAEICAGAGFDWLLIDGEHAP-----------------------------------NDVRTILSQLQAL 58 (249)
T ss_pred EEEEEeCCCcHHHHHHHhcCCCEEEEeccCCC-----------------------------------CCHHHHHHHHHHH
Confidence 34899988999999999999999999887531 1222222211111
Q ss_pred -CCCCeEEEe--CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhc
Q 015764 131 -GQAENIVID--LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQ 181 (401)
Q Consensus 131 -~~~~~vvv~--~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~ 181 (401)
...-.++|. ..|.. .+..++.+ |..+=++.-++|++||+.+..++..
T Consensus 59 ~~~g~~~~VRv~~~~~~--~i~~~Ld~--Ga~gIivP~v~s~e~a~~~v~~~~y 108 (249)
T TIGR02311 59 APYPSSPVVRPAIGDPV--LIKQLLDI--GAQTLLVPMIETAEQAEAAVAATRY 108 (249)
T ss_pred HhcCCCcEEECCCCCHH--HHHHHhCC--CCCEEEecCcCCHHHHHHHHHHcCC
Confidence 001122222 22221 23333332 4566788999999999999999884
No 56
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=73.66 E-value=10 Score=32.15 Aligned_cols=90 Identities=23% Similarity=0.376 Sum_probs=53.0
Q ss_pred ccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe
Q 015764 207 NEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV 286 (401)
Q Consensus 207 ~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~ 286 (401)
........+..++|.++.|+ +|-+|-- +.=+.+ ||.-+|. =..|. |=|.++-.-.|....
T Consensus 11 ~~~~~p~~i~~G~V~s~~PL----~I~i~~~-liL~~~-----------~L~i~~~-l~~~~--~~~~~~~~~~~~~~~- 70 (100)
T PF10844_consen 11 VEASNPVDIVIGTVVSVPPL----KIKIDQK-LILDKD-----------FLIIPEL-LKDYT--RDITIEHNSETDNIT- 70 (100)
T ss_pred HhcCCCceeEEEEEEecccE----EEEECCe-EEEchH-----------HEEeehh-ccceE--EEEEEecccccccee-
Confidence 34566777899999999983 4444431 111111 2333332 12221 122232222222111
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 015764 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (401)
Q Consensus 287 pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRv 320 (401)
-.|-..|+.||+|++.-.+|..+=.++.||
T Consensus 71 ----i~~~~~Lk~GD~V~ll~~~~gQ~yiVlDkV 100 (100)
T PF10844_consen 71 ----ITFTDGLKVGDKVLLLRVQGGQKYIVLDKV 100 (100)
T ss_pred ----EEEecCCcCCCEEEEEEecCCCEEEEEEeC
Confidence 678899999999999999998998888875
No 57
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=72.31 E-value=7.1 Score=38.98 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=44.1
Q ss_pred ehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 015764 147 PAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (401)
Q Consensus 147 PlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (401)
.+++-|+++... ..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 168 ~i~~av~~~r~~~~~~kIeVEv~~leea~~a---~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEVEVESLEDALKA---AKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 466666655443 35799999999998765 57999999999999999998888763
No 58
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=71.93 E-value=8.2 Score=38.83 Aligned_cols=54 Identities=9% Similarity=-0.016 Sum_probs=41.0
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 015764 148 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (401)
Q Consensus 148 lENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (401)
+++-+.++... ..+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~ea---l~~gaDiI~LDnm~~e~vk~av~~~~ 241 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEV---LAEGAELVLLDNFPVWQTQEAVQRRD 241 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCHHHHHHH---HHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 34444444322 25799999999988765 78999999999999999988777653
No 59
>PF13403 Hint_2: Hint domain
Probab=71.10 E-value=11 Score=33.97 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=57.8
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE--------eccceeEEEEEecCCCCeE---------EEE
Q 015764 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI--------ESRPLILVEAKTNSGDQTL---------YGI 344 (401)
Q Consensus 282 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKI--------E~RPLlLVeAe~~~~~G~~---------~sv 344 (401)
+.|.+|.| -+-.++|+.||+|+..| .|-....-|||.++ +.-.++.|.|-+= ++|.. +.+
T Consensus 7 T~I~T~~G-~~~Ve~L~~GD~V~T~d-gg~~~V~wig~~~~~~~~~~~~~~~~pvri~a~al-G~g~P~~dl~vsp~hrv 83 (147)
T PF13403_consen 7 TLIETPDG-PRPVEDLRPGDRVLTRD-GGFQPVRWIGRRTVSPADLPAPPRLAPVRIPAGAL-GNGRPSRDLLVSPQHRV 83 (147)
T ss_pred CEEecCCc-CeEeeccCCCCEEEecC-CCEEEEEEEEEEEecccccCcCCCcceEEEECCcc-CCCCCCcCeEECcccce
Confidence 46788888 78899999999999988 34455678999998 3445567777552 12211 234
Q ss_pred EeEecceEEEecCCCCCCCCCceeeeeecCCCCEEE
Q 015764 345 ILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVL 380 (401)
Q Consensus 345 iLQnAETIRLv~p~~g~~~~g~~vsVt~LK~GD~VL 380 (401)
++.+...=++.+.+ .-.+++..|--|+.|.
T Consensus 84 l~~~~~~~~~~g~~------~vlv~A~~Lv~~~~i~ 113 (147)
T PF13403_consen 84 LLRGPRAELLFGRD------EVLVPARDLVDGRGIR 113 (147)
T ss_pred eecchhhhhhcCCC------ceEEEHHHhcCCCCcE
Confidence 44433333344433 4566777777777665
No 60
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=70.83 E-value=9.8 Score=40.40 Aligned_cols=135 Identities=19% Similarity=0.292 Sum_probs=81.1
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCC-CeeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGD-RRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~g-k~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
+|++-+..+++.|+|.+.++. ++++.++.+.+. +...+ ..+..+..|.+++-++.+..-....|-
T Consensus 172 kD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~-------------l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dg 238 (473)
T TIGR01064 172 KDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREV-------------LGEKGAKDVKIIAKIENQEGVDNIDEIAEASDG 238 (473)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCceEEEEECCHHHHHhHHHHHhhCCc
Confidence 478889999999999999986 334444433332 11112 235577789999988887665545566
Q ss_pred EEEeCCCCee-eehh-------hhhhcccCCCceEEEEc-------C----CHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPDWQV-IPAE-------NIVASFQGSGKTVFAIS-------K----TPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~DW~i-IPlE-------NliA~~q~~~~~l~a~v-------~----~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
+++-..|-.. +|.| .++.+....+..++... . +-.|+.-+..+.+.|+|+|+|..+.
T Consensus 239 i~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~ 318 (473)
T TIGR01064 239 IMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGK 318 (473)
T ss_pred EEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCC
Confidence 6664433211 1222 22322222222333222 2 2347777888899999999997663
Q ss_pred --HHHHHHHHHhhcc
Q 015764 193 --VKAVLALKEYFDG 205 (401)
Q Consensus 193 --~~ev~~l~~~~~~ 205 (401)
.+.|+-+.+++.+
T Consensus 319 yP~~~v~~m~~I~~~ 333 (473)
T TIGR01064 319 YPVEAVKMMAKIAKE 333 (473)
T ss_pred CHHHHHHHHHHHHHH
Confidence 3667777777643
No 61
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=70.74 E-value=12 Score=34.50 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=67.8
Q ss_pred hhHhHHHHHhCCcEEEEcCcc------hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 015764 60 KQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 133 (401)
-++.....+.|++++-+..++ .+..+.+.+...+ |+...+ -+.++++.+.+.. ..+
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~i-Pi~~~~---------------~i~~~~~v~~~~~--~Ga 95 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSL-PVLRKD---------------FIIDPYQIYEARA--AGA 95 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCC-CEEECC---------------eecCHHHHHHHHH--cCC
Confidence 578888999999987654222 2222222222111 333221 2566665555443 368
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 015764 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (401)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (401)
+.+++...|...==+++++.++..-+...+..+.+.+|++. +++.|+|.+.+.+.|
T Consensus 96 d~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~---~~~~g~~~i~~t~~~ 151 (217)
T cd00331 96 DAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELER---ALALGAKIIGINNRD 151 (217)
T ss_pred CEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHH---HHHcCCCEEEEeCCC
Confidence 89998777765322355555444446677888899999655 566899999888655
No 62
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.67 E-value=7.9 Score=38.83 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=37.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (401)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++...++.
T Consensus 194 ~kIeVEv~slee~~ea---~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 194 THVEVEVDRLDQIEPV---LAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred CcEEEEeCCHHHHHHH---HhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 5799999999999866 47899999999999999998887763
No 63
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=70.48 E-value=15 Score=28.73 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=51.0
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 015764 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (401)
Q Consensus 116 ~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (401)
...++++.-.... ....+.++++..-.. .-...++..++. .+..++....+ .+......+++.|++|.+.+|-++
T Consensus 28 ~~~~~~~~~~~~~-~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t~~-~~~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 28 TASSGEEALELLK-KHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVTDE-DDSDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp EESSHHHHHHHHH-HSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEESS-TSHHHHHHHHHTTESEEEESSSSH
T ss_pred EECCHHHHHHHhc-ccCceEEEEEeeecc-ccccccccccccccccccEEEecCC-CCHHHHHHHHHCCCCEEEECCCCH
Confidence 4666666444332 334788888754333 333334443333 45677777744 446667788899999999999999
Q ss_pred HHHHH
Q 015764 194 KAVLA 198 (401)
Q Consensus 194 ~ev~~ 198 (401)
+++.+
T Consensus 105 ~~l~~ 109 (112)
T PF00072_consen 105 EELRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97753
No 64
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.08 E-value=54 Score=30.41 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=61.8
Q ss_pred CchhHhHHHHHhCCcEEEEcCc---ch----hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSE---NQ----QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD 130 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~---~~----~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~ 130 (401)
.+.+.+..+++.|++.+++... +. +.+++++.-..+-.+-+.+|++.- +|..-. .-.++.++.+.....
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~-~g~~~~---~~~~~~~~~~~~~~~ 157 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAV-KGWLEK---SEVSLEELAKRLEEL 157 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEE-cCCccc---CCCCHHHHHHHHHhC
Confidence 5889999999999999998742 22 333344321122233444443211 111000 012333332222222
Q ss_pred CCCCeEEEeCCC----Ceeeehhhhhhcc-cCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 131 GQAENIVIDLPD----WQVIPAENIVASF-QGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 131 ~~~~~vvv~~~D----W~iIPlENliA~~-q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
.++.+++...+ -.-+-++ ++.++ +..+..+++ .+.+.+|++.++ +.|+|||++-+.
T Consensus 158 -g~~~ii~~~~~~~g~~~g~~~~-~i~~i~~~~~ipvia~GGi~~~~di~~~~---~~Gadgv~ig~a 220 (230)
T TIGR00007 158 -GLEGIIYTDISRDGTLSGPNFE-LTKELVKAVNVPVIASGGVSSIDDLIALK---KLGVYGVIVGKA 220 (230)
T ss_pred -CCCEEEEEeecCCCCcCCCCHH-HHHHHHHhCCCCEEEeCCCCCHHHHHHHH---HCCCCEEEEeHH
Confidence 35666643221 0111222 22222 222334544 378999998765 489999998653
No 65
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=69.99 E-value=27 Score=33.48 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=40.0
Q ss_pred CCeeeecCC---ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 271 RPFRVNAGP---VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 271 RPFRVNAGa---VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|||.++.-+ +-=+|..-|.-|.||..|+.||+|.+-...|+.- ..- ....||+++|=+
T Consensus 49 ~pySi~~~~~~~~~~~Ik~~G~~S~~L~~l~~Gd~v~v~gP~G~~f--~~~--~~~~~~~llIAg 109 (263)
T PRK08221 49 APISVSDYGDGYIDLTIRRVGKVTDEIFNLKEGDKLFLRGPYGNGF--PVD--TYKGKELIVVAG 109 (263)
T ss_pred ceeeccCCCCCEEEEEEEeCCchhhHHHhCCCCCEEEEECCCCCCc--ccC--ccCCccEEEEcc
Confidence 778776533 3344555577899999999999999988888621 111 123579988854
No 66
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=69.90 E-value=8.7 Score=38.52 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.3
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (401)
..+|..++.|.+||+.+ ++.|+|.|+|+.=+|+++++..+++.
T Consensus 189 ~~kIeVEv~tleqa~ea---~~agaDiI~LDn~~~e~l~~av~~~~ 231 (284)
T PRK06096 189 EKKIVVEADTPKEAIAA---LRAQPDVLQLDKFSPQQATEIAQIAP 231 (284)
T ss_pred CCCEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 35799999999998765 68999999999999999998888763
No 67
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.35 E-value=9.5 Score=38.61 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=36.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
.+|..+|.|.+||+.+ ++.|+|.|+|+.=+|+++++..+.+
T Consensus 206 ~kIeVEvetleea~eA---~~aGaDiImLDnmspe~l~~av~~~ 246 (294)
T PRK06978 206 VPVQIEVETLAQLETA---LAHGAQSVLLDNFTLDMMREAVRVT 246 (294)
T ss_pred CcEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhh
Confidence 5799999999998765 6899999999999999998877765
No 68
>PRK06739 pyruvate kinase; Validated
Probab=69.14 E-value=15 Score=37.90 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=88.4
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
+|++.+.-|++.|+|.+-... .+++.+.++.++ +.+. +..+..+.+|.+++-++.+..-...+|-
T Consensus 166 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDg 232 (352)
T PRK06739 166 KDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDF-------------IQQYKETSPNLIAKIETMEAIENFQDICKEADG 232 (352)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCE
Confidence 578889999999999665442 224444444443 1221 2245577799999999998888878899
Q ss_pred EEEeCCCCe-eeehhhhh-------hcccCCCceEE-E----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPDWQ-VIPAENIV-------ASFQGSGKTVF-A----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~DW~-iIPlENli-------A~~q~~~~~l~-a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
++|...|-- -||+|.+- ......+.-+| | ...+-+|+--.+.+..-|+|||+|..+.
T Consensus 233 imVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~ 312 (352)
T PRK06739 233 IMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGE 312 (352)
T ss_pred EEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCC
Confidence 999665654 37777653 22222222233 2 2345688888899999999999999553
Q ss_pred --HHHHHHHHHhhc
Q 015764 193 --VKAVLALKEYFD 204 (401)
Q Consensus 193 --~~ev~~l~~~~~ 204 (401)
.+.|+-+.+++.
T Consensus 313 yPveaV~~m~~I~~ 326 (352)
T PRK06739 313 HPIESVSTLRLVSE 326 (352)
T ss_pred CHHHHHHHHHHHHH
Confidence 356666666653
No 69
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=68.94 E-value=4 Score=35.79 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.1
Q ss_pred CceeeeeecCCCCEEEEEecCC--Ccccceeee
Q 015764 365 EKAIPVTSLKVGDEVLLRVQGA--ARHTGIEIQ 395 (401)
Q Consensus 365 g~~vsVt~LK~GD~VL~~~~~~--gRHfG~~I~ 395 (401)
+.+|+..+|+|||-|+.....+ ..|+||=+.
T Consensus 69 ~~~v~~~~~qpGDlvff~~~~~~~~~HvGIy~G 101 (134)
T TIGR02219 69 LVPVPCDAAQPGDVLVFRWRPGAAAKHAAIAAS 101 (134)
T ss_pred CcccchhcCCCCCEEEEeeCCCCCCcEEEEEeC
Confidence 4678888999999999987543 469999874
No 70
>PLN02461 Probable pyruvate kinase
Probab=68.40 E-value=14 Score=40.01 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=123.5
Q ss_pred CchhHh-HHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
.||+.+ .-|++-|+|.+-+.. .+++.++++.++ +...|+.+..+.+|.+++.++.+..-+..+|-
T Consensus 194 kD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~-------------l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDg 260 (511)
T PLN02461 194 KDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKV-------------LGEHAKSILLISKVENQEGLDNFDDILAESDA 260 (511)
T ss_pred HHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHH-------------HHhCCCCCCEEEEECCHHHHHHHHHHHHhcCE
Confidence 467777 689999999655442 123444444444 22335556688899999999999888888999
Q ss_pred EEEeCCCCe-eeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~DW~-iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
++|...|-- =||+|++-. .....+.-+|. ...+-.|+--.+.+..-|+|+|+|..+.
T Consensus 261 IMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~ 340 (511)
T PLN02461 261 FMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGA 340 (511)
T ss_pred EEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCC
Confidence 999665654 377777633 22222222332 2345578888899999999999999553
Q ss_pred --HHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCC
Q 015764 193 --VKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIAS 270 (401)
Q Consensus 193 --~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~ 270 (401)
.+.|+-+.+++.+.+.......+-....+. .. + -+.+-| + +.+|=+ +.
T Consensus 341 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~---~~--~--------~~~~~~---------~--ia~sav----~~-- 390 (511)
T PLN02461 341 YPELAVKTMARICREAEASLDYGALFKEIMRS---AP--L--------PMSPLE---------S--LASSAV----RT-- 390 (511)
T ss_pred CHHHHHHHHHHHHHHHHhccchhhhhhhhccc---cc--c--------cCChHH---------H--HHHHHH----HH--
Confidence 356666777664321100000000000000 00 0 000000 0 000000 01
Q ss_pred CCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCC
Q 015764 271 RPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQK 309 (401)
Q Consensus 271 RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~ 309 (401)
-.++||.+.=.|+.. |..++++|-.++--.|+++-.+
T Consensus 391 -A~~l~a~aIiv~T~s-G~tA~~iSk~RP~~pIia~t~~ 427 (511)
T PLN02461 391 -ANKVKASLIVVLTRG-GTTARLVAKYRPAVPILSVVVP 427 (511)
T ss_pred -HHhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEEecC
Confidence 135799999999886 8889999999999999998644
No 71
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=67.92 E-value=5.3 Score=35.34 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.7
Q ss_pred cceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCccc
Q 015764 349 AETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHT 390 (401)
Q Consensus 349 AETIRLv~p~~g~~~~g~~vsVt~LK~GD~VL~~~~~~gRHf 390 (401)
-||||+.+|+ .-.++..+|-.+|++.+.+++.||-|
T Consensus 61 ietIrI~~pG------~YeiNl~~Lld~~~iVval~EeG~Y~ 96 (112)
T COG3364 61 IETIRILRPG------VYEINLESLLDRDEIVVALQEEGRYF 96 (112)
T ss_pred ceEEEEecCc------eEEEehhhhccCCceEEEEccCCeEE
Confidence 4999999998 56799999999999999999999865
No 72
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=67.85 E-value=6.3 Score=37.11 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=44.2
Q ss_pred CCCCeeeecCC---ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 015764 269 ASRPFRVNAGP---VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 334 (401)
Q Consensus 269 a~RPFRVNAGa---VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~ 334 (401)
..|||-+...| ++=.|..-|.-|+||.+++.||.|.+....|+.= ..-. +.+|+++|=+-.
T Consensus 49 ~~r~ySi~s~~~~~l~l~Vk~~G~~t~~l~~l~~G~~v~i~gP~G~~f--~l~~---~~~~~vlIagG~ 112 (250)
T PRK00054 49 LERPISISDIDKNEITILYRKVGEGTKKLSKLKEGDELDIRGPLGNGF--DLEE---IGGKVLLVGGGI 112 (250)
T ss_pred CceeeEEeeeCCCEEEEEEEEcChHHHHHhcCCCCCEEEEEcccCCCC--CCCC---CCCeEEEEeccc
Confidence 36788776544 5556666688899999999999999999888731 1111 568998887543
No 73
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=66.48 E-value=47 Score=31.42 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=73.4
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
-.+++.++++.|+..+=++-.+..-.+.+..+..-.+ ....+| -..|.++++.+.+... .+++++.
T Consensus 24 ~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~-----------~~~~iG-aGTV~~~~~~~~a~~a--GA~fivs 89 (206)
T PRK09140 24 ALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG-----------DRALIG-AGTVLSPEQVDRLADA--GGRLIVT 89 (206)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC-----------CCcEEe-EEecCCHHHHHHHHHc--CCCEEEC
Confidence 3678899999999987776543322222333311100 011222 3468899987665542 5788887
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 015764 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (401)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l~~~~ 203 (401)
-..|- .++.+.+..+.-++..+.|++|+.. +.+.|+|-|-+-|. .++.+++++..+
T Consensus 90 p~~~~------~v~~~~~~~~~~~~~G~~t~~E~~~---A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 90 PNTDP------EVIRRAVALGMVVMPGVATPTEAFA---ALRAGAQALKLFPASQLGPAGIKALRAVL 148 (206)
T ss_pred CCCCH------HHHHHHHHCCCcEEcccCCHHHHHH---HHHcCCCEEEECCCCCCCHHHHHHHHhhc
Confidence 44443 3333334445567888999999755 55789999987443 356666666554
No 74
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=66.45 E-value=15 Score=36.78 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=69.0
Q ss_pred EEEEeCchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 015764 53 VWIWTESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (401)
Q Consensus 53 vWiw~~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 131 (401)
|-+=.-++.++..+|..|+.++++|- +++|.++.+-+-.+..|+-.. | +.
T Consensus 72 VR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~R--------g--------vg------------- 122 (255)
T COG3836 72 VRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGER--------G--------VG------------- 122 (255)
T ss_pred eeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCcc--------c--------cc-------------
Confidence 33334578899999999999999985 557778777777666552111 1 00
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhh-cccCeEEEecCCHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALE-QGLGGIVLKVEDVK 194 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE-~G~DGVvl~~~d~~ 194 (401)
...-...-|. ++.+-++.. +.++-+++.+.|.+--.-.=.++. -|+|||.+-|.|.+
T Consensus 123 ---~~~arAsr~~--~i~dyl~~A-n~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLa 180 (255)
T COG3836 123 ---SALARASRFG--RIADYLAQA-NDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLA 180 (255)
T ss_pred ---hhhhhhhhcC--CHHHHHHhc-ccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHHHH
Confidence 0111134576 666777764 456778888887654443334444 49999999988754
No 75
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=66.24 E-value=56 Score=30.96 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=29.1
Q ss_pred Eec-CCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEeccceeEEEEE
Q 015764 285 LVP-GGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 285 ~~p-ggkT~YLSEL~sG~eVLvVd~~-G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
..| |.-|.||..|+.||+|.+...- |... ... .-+.+|++||=+=
T Consensus 69 ~~~~G~~S~~L~~l~~Gd~v~i~gp~~g~f~---l~~-~~~~~~~vlIagG 115 (248)
T PRK10926 69 TVPEGKLSPRLAALKPGDEVQVVSEAAGFFV---LDE-VPDCETLWMLATG 115 (248)
T ss_pred EeCCCCcChHHHhCCCCCEEEEecCCCcceE---ccC-CCCCCeEEEEEee
Confidence 345 4467899999999999998743 4331 110 1134788888653
No 76
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=66.19 E-value=94 Score=28.02 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=56.7
Q ss_pred hHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeC
Q 015764 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDL 140 (401)
Q Consensus 61 ~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~ 140 (401)
+-+..|++.|++.+.++..+... ..+.. +.+.+..+++. +.+.++..++. ...+|++.+..
T Consensus 72 ~~~~~a~~~gad~vh~~~~~~~~-~~~~~--------------~~~~~~~~g~~--~~t~~e~~~a~--~~gaD~v~~~~ 132 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDDLPV-ADARA--------------LLGPDAIIGLS--THTLEEAAAAL--AAGADYVGVGP 132 (212)
T ss_pred ChHHHHHHcCCCEEecCcccCCH-HHHHH--------------HcCCCCEEEEe--CCCHHHHHHHh--HcCCCEEEECC
Confidence 45667888888887775532110 11111 11234555553 44655544433 33689998742
Q ss_pred CCCee-----ee---hhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEE-----ecCCHH
Q 015764 141 PDWQV-----IP---AENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVL-----KVEDVK 194 (401)
Q Consensus 141 ~DW~i-----IP---lENliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl-----~~~d~~ 194 (401)
-..+. .| ++.+-.-.+..+ ..|++.-. .. .+.+-.+++.|+|||++ ..+||.
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GG-I~-~~~i~~~~~~Ga~gv~~gs~i~~~~d~~ 198 (212)
T PRK00043 133 IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGG-IT-PENAPEVLEAGADGVAVVSAITGAEDPE 198 (212)
T ss_pred ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECC-cC-HHHHHHHHHcCCCEEEEeHHhhcCCCHH
Confidence 22111 11 233222111112 45555422 21 35566888999999997 455653
No 77
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=66.02 E-value=3.1 Score=42.93 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=61.8
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceee--eeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIAL--LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~--i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
.++++.-|=..|+-+++++-+..-+.+..+.+.- ..| ++=.+.+-++..- ...++. ...+...|+
T Consensus 136 t~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp---~~l~lknfe~~~~-----~~v~~~-----~~sg~~~~~ 202 (363)
T KOG0538|consen 136 TEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLP---KNLTLKNFEGLKL-----TEVEEA-----GDSGLAAYV 202 (363)
T ss_pred HHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCC---ccccccccccccc-----ccCCcc-----cchhhhhhh
Confidence 6899999999999999998776666665555422 111 0001111111110 011110 011111122
Q ss_pred EE---eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 137 VI---DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 137 vv---~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
.. ...+|+=|+.=.=+-.+ --|+..+-+.+||+.| .|+|++||++..-
T Consensus 203 ~~~id~Sl~W~Di~wLr~~T~L----PIvvKGilt~eDA~~A---ve~G~~GIIVSNH 253 (363)
T KOG0538|consen 203 SSQIDPSLSWKDIKWLRSITKL----PIVVKGVLTGEDARKA---VEAGVAGIIVSNH 253 (363)
T ss_pred hcCCCCCCChhhhHHHHhcCcC----CeEEEeecccHHHHHH---HHhCCceEEEeCC
Confidence 11 13489887653322221 2467788888998875 6899999998754
No 78
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=65.52 E-value=71 Score=29.35 Aligned_cols=113 Identities=18% Similarity=0.202 Sum_probs=61.6
Q ss_pred chhHhHHHHHhCCcE--EEEcCcc-----hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhcccc
Q 015764 59 SKQVMTAAVERGWNT--FVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPAD 130 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~--~v~~~~~-----~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~ 130 (401)
+.+.+..|++.|+|. |++.+.. .+.++++.++.. ..-+.|+++ +. +.+++..++...
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~-------------~~~~~V~v~--vn~~~~~i~~ia~~~ 72 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP-------------PFVKRVGVF--VNEDLEEILEIAEEL 72 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC-------------CCCcEEEEE--eCCCHHHHHHHHHhc
Confidence 467888999999995 5654321 233444444311 111334443 22 345555555544
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC-CCceEE--EEcCCHHHHHHHHHHhhcccCeEEEecCCH
Q 015764 131 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVEDV 193 (401)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~d~ 193 (401)
..+.|-+...+ |.+.+ +++.. .+.+++ ..+++..+... ..+.+.|+|.+++++...
T Consensus 73 -~~d~Vqlhg~e----~~~~~-~~l~~~~~~~~i~~i~~~~~~~~~~-~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 73 -GLDVVQLHGDE----SPEYC-AQLRARLGLPVIKAIRVKDEEDLEK-AAAYAGEVDAILLDSKSG 131 (203)
T ss_pred -CCCEEEECCCC----CHHHH-HHHHhhcCCcEEEEEecCChhhHHH-hhhccccCCEEEEcCCCC
Confidence 57889897766 33322 22221 122344 44555544433 455678999999988643
No 79
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=65.01 E-value=8.5 Score=34.22 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.2
Q ss_pred CceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 015764 289 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (401)
Q Consensus 289 gkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvK 321 (401)
+--..|.+|+.||+|.+.+.+|++.+=.|-+++
T Consensus 65 ~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~~ 97 (144)
T cd05829 65 AVFFRLGDLRKGDKVEVTRADGQTATFRVDRVE 97 (144)
T ss_pred hhhcchhcCCCCCEEEEEECCCCEEEEEEeEEE
Confidence 445679999999999999999998887666654
No 80
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=64.94 E-value=21 Score=34.79 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=78.2
Q ss_pred EEEEe--CchhHhHHHHHhCCcEEEEcCc------chhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 015764 53 VWIWT--ESKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (401)
Q Consensus 53 vWiw~--~~K~~vt~AlEsG~~~~v~~~~------~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e 124 (401)
-|+-. +-.++.....+.|++++-+..+ +.+..+...+.-.+ |+..+| -|.++-+.+
T Consensus 64 g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~i-Pvl~kd---------------fi~~~~qi~ 127 (260)
T PRK00278 64 GVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSL-PVLRKD---------------FIIDPYQIY 127 (260)
T ss_pred CccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCC-CEEeee---------------ecCCHHHHH
Confidence 35533 2477888888999999766322 23333333332111 322111 266666655
Q ss_pred hhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 015764 125 QLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (401)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (401)
++. ...+|.+.+...+...--++.++...+.-+-.+++++.|.+|++.+ ++.|+|=|-+.+.|
T Consensus 128 ~a~--~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A---~~~gadiIgin~rd 190 (260)
T PRK00278 128 EAR--AAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERA---LKLGAPLIGINNRN 190 (260)
T ss_pred HHH--HcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH---HHcCCCEEEECCCC
Confidence 444 3368889888877654458889988888888999999999999774 47799988877644
No 81
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=64.82 E-value=43 Score=30.54 Aligned_cols=58 Identities=26% Similarity=0.452 Sum_probs=36.4
Q ss_pred CCCeeeec-----CCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 270 SRPFRVNA-----GPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|||-+-. |-+.=+|.. ++| -|.||.. |+.||.|.+....|..- .- ....+|+++|=+
T Consensus 50 ~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l~~~l~~Gd~v~i~gP~G~~~--~~---~~~~~~~vliag 115 (235)
T cd06217 50 QRSYSIASSPTQRGRVELTVKRVPGGEVSPYLHDEVKVGDLLEVRGPIGTFT--WN---PLHGDPVVLLAG 115 (235)
T ss_pred eeeecccCCCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEeCCceeeE--eC---CCCCceEEEEec
Confidence 46666532 333444433 444 5899975 99999999998888641 11 124588888744
No 82
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=64.68 E-value=13 Score=37.18 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=42.2
Q ss_pred hhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhc
Q 015764 148 AENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFD 204 (401)
Q Consensus 148 lENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~ 204 (401)
+++.+.++... ..+|..++.+.+||+.+ ++.|+|.|+|+.=+|+++++..+.+.
T Consensus 175 i~~av~~~r~~~~~~kIeVEv~tleea~ea---~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 175 WGGAIGRLKQTAPERKITVEADTIEQALTV---LQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCHHHHHHH---HHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 44555544332 46799999999998764 68999999999999999998887763
No 83
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=64.67 E-value=28 Score=34.86 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=58.9
Q ss_pred eeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----cee
Q 015764 213 LSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHA 282 (401)
Q Consensus 213 l~L~~atVt~V~~vGmGD-RVCVDtc-----sll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGa----VHa 282 (401)
-...+++|++++.+.-.- ++.+..- --++||+=+-|. -+....++...|||-+..-| .-=
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~----------~~~~~~~~~~~R~ySias~p~~~~l~~ 221 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVR----------LDPEGEEYQEIRQYSLSDAPNGKYYRI 221 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEE----------EecCCccccceeEEEeeeCCCCCeEEE
Confidence 346678999999876442 2333321 123444432221 11111234445888875433 222
Q ss_pred EEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 283 YVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 283 Yv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|.. |+| -|.||.. |+.||+|.+-...|+..- -. -+.+|+++|=+
T Consensus 222 ~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l---~~--~~~~~~vlIag 269 (399)
T PRK13289 222 SVKREAGGKVSNYLHDHVNVGDVLELAAPAGDFFL---DV--ASDTPVVLISG 269 (399)
T ss_pred EEEECCCCeehHHHhhcCCCCCEEEEEcCcccccc---CC--CCCCcEEEEec
Confidence 3333 444 4899965 999999999888887421 11 13589888754
No 84
>PRK14725 pyruvate kinase; Provisional
Probab=64.56 E-value=19 Score=39.93 Aligned_cols=187 Identities=23% Similarity=0.290 Sum_probs=98.9
Q ss_pred CCceEEEEcCC--HHHHHHHHHHhhcccCeEEEec--CCHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEE
Q 015764 158 SGKTVFAISKT--PSEAQIFLEALEQGLGGIVLKV--EDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVC 233 (401)
Q Consensus 158 ~~~~l~a~v~~--~~eA~~al~~LE~G~DGVvl~~--~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVC 233 (401)
.+++|++...+ +++....-..++.|.|-.=+.- +|++.-.++.+.+.+..... |.-=++-
T Consensus 139 R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~----------------gr~~~I~ 202 (608)
T PRK14725 139 RPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEEL----------------GRRCRIA 202 (608)
T ss_pred CCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHc----------------CCCEEEE
Confidence 46899999984 5678899999999999876654 56777666555543221111 1122233
Q ss_pred EeecC------CCCCCceE--------EEe--ccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeec
Q 015764 234 VDLCS------LMRPGEGL--------LVG--SFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSEL 297 (401)
Q Consensus 234 VDtcs------ll~~GEGm--------LVG--S~s~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL 297 (401)
.|+.. -+.+|-+. .-| -++.-+.|. .+. +|-..+.|- +++ +.+ --.+|..|
T Consensus 203 mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~-~~~--~~~~~~~~~-----~~~--~~v---~~~~~~~l 269 (608)
T PRK14725 203 MDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLT-ASE--SPPPSPPPG-----PVG--LPV---DPEWLARL 269 (608)
T ss_pred EeCCCCcceEEecCCCccccccccccccccccccchhheee-ccc--CCCCCCCcc-----ccc--ccc---Chhhhhhc
Confidence 33321 11111100 000 011222332 332 221122221 111 222 34689999
Q ss_pred cCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCce-e-eeeecCC
Q 015764 298 KSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKA-I-PVTSLKV 375 (401)
Q Consensus 298 ~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~~~~g~~-v-sVt~LK~ 375 (401)
+.||++...|+.|+.|.-.|-++-=+ ..+.|+.- +.-+||--.+++-+-.. ..-++-| + .-..|++
T Consensus 270 ~~Gd~i~~~DaRg~~R~l~V~~~~~~---~~~~~~~~--------~~Y~~~G~~l~~~~~~~-~~v~~~p~~~~~i~L~~ 337 (608)
T PRK14725 270 EPGDELRFTDARGKKRKLTVTEVDDE---GVLAEGSQ--------TAYLANGTLLRLGRHDS-TRVGGLPPVEQKLRLKV 337 (608)
T ss_pred CCCceeeeeeccccceeeeEEeecCc---eeEEeecc--------eeeeccCceeeeccccc-cccccccccCcceEecC
Confidence 99999999999999999999887433 44444432 33444444444321010 0000111 1 1258999
Q ss_pred CCEEEEEecC
Q 015764 376 GDEVLLRVQG 385 (401)
Q Consensus 376 GD~VL~~~~~ 385 (401)
||++.+..+.
T Consensus 338 Gd~l~lt~~~ 347 (608)
T PRK14725 338 GDRLVLTRDD 347 (608)
T ss_pred CCEEEEecCC
Confidence 9999998764
No 85
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=63.93 E-value=17 Score=38.88 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=86.9
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
+|++.+.-|++-|+|.+-+.. .+++.++++..+ +...|..+..+.+|.+++.++.+..-....|-+
T Consensus 175 kD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~-------------l~~~~~~~~iiakIEt~~av~nldeI~~~~DgI 241 (480)
T cd00288 175 KDKADLRFGVEQGVDMIFASFVRKASDVLEIREV-------------LGEKGKDIKIIAKIENQEGVNNFDEILEASDGI 241 (480)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCceEEEEECCHHHHHhHHHHHHhcCEE
Confidence 578899999999999765542 234444444443 122244566788999999888877766668888
Q ss_pred EEeCCCCe-eeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC-----
Q 015764 137 VIDLPDWQ-VIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED----- 192 (401)
Q Consensus 137 vv~~~DW~-iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d----- 192 (401)
++-..|-. =+|.|.+.+ .....+.-++. ...+-.|+--.+.+..-|+|||+|..+.
T Consensus 242 mIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~y 321 (480)
T cd00288 242 MVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKY 321 (480)
T ss_pred EECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCC
Confidence 88554533 256666543 22222222222 1345578888889999999999996654
Q ss_pred -HHHHHHHHHhhc
Q 015764 193 -VKAVLALKEYFD 204 (401)
Q Consensus 193 -~~ev~~l~~~~~ 204 (401)
.+.|+-+.+++.
T Consensus 322 PveaV~~m~~I~~ 334 (480)
T cd00288 322 PVEAVKAMARICL 334 (480)
T ss_pred HHHHHHHHHHHHH
Confidence 366666777764
No 86
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=63.82 E-value=15 Score=36.88 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=36.2
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
..+|-.++.|.+||+.+ ++.|+|.|+|++=+++++++..+.+
T Consensus 196 ~~~I~VEv~tleea~eA---~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 196 PLTIEVETETLEQVQEA---LEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred CCEEEEECCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 35799999999999855 5899999999999999998877765
No 87
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=63.55 E-value=20 Score=38.31 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=70.6
Q ss_pred CchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 015764 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 137 (401)
+..+.+.+.+|.|+|.+.++..|-.....|..|..+...+ + +..+++ ..|.++++...+.. ..+|.+.
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~-------~--~~~v~a-G~V~t~~~a~~~~~--aGad~I~ 308 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNY-------P--HVDIIA-GNVVTADQAKNLID--AGADGLR 308 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhC-------C--CceEEE-CCcCCHHHHHHHHH--cCCCEEE
Confidence 5689999999999999998863211111122222222100 0 122222 36888888666554 3577776
Q ss_pred Ee-C----------CCC---eeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 138 ID-L----------PDW---QVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 138 v~-~----------~DW---~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+. + .+| ++-.+.++...++..+..+|+ .+.+..|+-. +|..|+|+|++-+-
T Consensus 309 vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~k---Ala~GA~~Vm~G~~ 375 (495)
T PTZ00314 309 IGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICK---ALALGADCVMLGSL 375 (495)
T ss_pred ECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH---HHHcCCCEEEECch
Confidence 52 1 122 222334454444445678999 8899988754 56799999998764
No 88
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=63.33 E-value=11 Score=34.22 Aligned_cols=54 Identities=22% Similarity=0.403 Sum_probs=36.6
Q ss_pred CCCeeee----cCCceeEEEe-c--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 270 SRPFRVN----AGPVHAYVLV-P--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 270 ~RPFRVN----AGaVHaYv~~-p--ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|||-+- .|-+.=.|.. | |+-|+||..|+.||+|.+-...|+... .+|+++|=+
T Consensus 47 ~r~ySi~s~~~~~~l~~~vk~~~~~g~~s~~l~~l~~G~~v~i~gP~G~~~~---------~~~~vlia~ 107 (218)
T cd06196 47 KRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRLQPGDTLLIEDPWGAIEY---------KGPGVFIAG 107 (218)
T ss_pred ccccccccCCCCCeEEEEEEEcCCCCcHhHHHHhCCCCCEEEEECCccceEe---------cCceEEEec
Confidence 4555552 2334444544 3 456999999999999999999997531 367777643
No 89
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=63.27 E-value=4.3 Score=35.27 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhhcccCeEEE---ecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 015764 168 TPSEAQIFLEALEQGLGGIVL---KVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (401)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl---~~~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V 223 (401)
|.-+.+....+|.+|.||++- +..=-+. +|+..... .++..+.+.||||..+
T Consensus 43 ~~~~re~l~qaLT~G~egav~f~~k~g~R~~---IKe~~~E~-s~k~~~~~sPatvR~v 97 (98)
T PF11247_consen 43 SGFQREMLVQALTHGPEGAVAFVVKQGIREA---IKEMLSEY-SDKESFKFSPATVREV 97 (98)
T ss_pred CHHHHHHHHHHHhcChHHHHHHHHHHHHHHH---HHHHHHHh-ccccceeecCceEEee
Confidence 899999999999999999872 2221222 23433332 2567799999999865
No 90
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.85 E-value=30 Score=32.33 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=66.0
Q ss_pred CchhHhHHHHHhCCcEEEEcCcch------hhHhhccceeee--eeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALL--DPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i--~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 129 (401)
+--+++..+.+.|++.+.+..-+. +....+.++..- -|+.+.+| |.+.++.+.+..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GG---------------i~~~~~~~~~~~- 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGG---------------IRSAEDAASLLD- 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCC---------------cCCHHHHHHHHH-
Confidence 457888999999999877764321 111222222221 13344333 788888777664
Q ss_pred cCCCCeEEEeCCCCeee-ehhhhhhcccCCCceEEEEcC---------------CHHHHHHHHHHhhcccCeEEEecC
Q 015764 130 DGQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISK---------------TPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 130 ~~~~~~vvv~~~DW~iI-PlENliA~~q~~~~~l~a~v~---------------~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
..++.+++.....+-. +++.+...+.. .+++..+. +.+-...+....+.|++.+++..-
T Consensus 97 -~Ga~~v~iGs~~~~~~~~~~~i~~~~g~--~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~ 171 (241)
T PRK13585 97 -LGVDRVILGTAAVENPEIVRELSEEFGS--ERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNV 171 (241)
T ss_pred -cCCCEEEEChHHhhChHHHHHHHHHhCC--CcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 3678888855443222 35667666542 24543332 112244455557899999998654
No 91
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=62.77 E-value=37 Score=35.15 Aligned_cols=169 Identities=16% Similarity=0.137 Sum_probs=86.4
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHH--HHHHHHHHh--hcccCeEEEecCCHHHHHHHHHhhcccccccceeee
Q 015764 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPS--EAQIFLEAL--EQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSL 215 (401)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~--eA~~al~~L--E~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~l~L 215 (401)
...|.-.|.+.-.|.++..... -+...+.+ +....+.+. ..|+-|-.+.|-+.+. -++..-+ -...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~--- 142 (411)
T TIGR03224 73 QLTWDELPEEVTLPEAAAEPAA-AAGQDDEEPSRGSKSSGVQEVEAAQHGSTRAPWSAAH-----PYVNLYG-VKAP--- 142 (411)
T ss_pred eeccccCCCcCChhhhhhCCcc-ccccCccccccchhhhhhhhhccccCCCCCCCccccC-----Ccccccc-CCCC---
Confidence 3489999988888766544221 11111111 123333333 6777777776664331 1221111 1111
Q ss_pred eEEEEEEEEEcCC---cceEE---EeecC---CCCCCceEEEeccCceEEEEeeccc--cCCCCCCCCeeeecCC-----
Q 015764 216 MKATVTRVDVAGM---GDRVC---VDLCS---LMRPGEGLLVGSFARGLFLVHSECL--ESNYIASRPFRVNAGP----- 279 (401)
Q Consensus 216 ~~atVt~V~~vGm---GDRVC---VDtcs---ll~~GEGmLVGS~s~glFLVhsEt~--es~Yva~RPFRVNAGa----- 279 (401)
..|+|+.++.+.- .+.|. +|.-. -+.||+=+.| .+ .-+. ..|+ -.|||-+---+
T Consensus 143 ~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l--------~~-pg~~~~g~~~-~~R~YSIas~~~~~~~ 212 (411)
T TIGR03224 143 ITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGI--------LP-PGTDASGKPH-YARMYSVASPRNGERP 212 (411)
T ss_pred eEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEE--------ec-CCcCcCCCcC-cceeeeecCCCCccCC
Confidence 3489999998842 33433 44322 1344443222 11 1111 1122 24666653211
Q ss_pred ----c-eeEEEec---------CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 280 ----V-HAYVLVP---------GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 280 ----V-HaYv~~p---------ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
+ ..|-.+| |--|.||.+|+.||+|.+....|+.-... .-..+|++||=+
T Consensus 213 ~~~~l~l~Vk~v~~~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp----~~~~~~lllIag 275 (411)
T TIGR03224 213 GYNNLALTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMP----NHPESSIMMICT 275 (411)
T ss_pred CCCEEEEEEEEEEecCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCC----CCCCCCEEEEec
Confidence 1 2333444 55799999999999999999999742211 112478887743
No 92
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=62.24 E-value=57 Score=30.52 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=50.3
Q ss_pred EEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 015764 115 IEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (401)
Q Consensus 115 ~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (401)
.+..+.++.-.. ......|.++++-.-+..=.+|-+=.=.+....-=+......++.....++|+.|++|.+++..+++
T Consensus 30 ~~a~~~~~~l~~-~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~ 108 (211)
T COG2197 30 GEASNGEEALDL-ARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPE 108 (211)
T ss_pred EEeCCHHHHHHH-hhhcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 345544432222 2344678888876555544443322111122222344455667778889999999999999999998
Q ss_pred HHHHH
Q 015764 195 AVLAL 199 (401)
Q Consensus 195 ev~~l 199 (401)
++.+.
T Consensus 109 ~l~~a 113 (211)
T COG2197 109 ELVEA 113 (211)
T ss_pred HHHHH
Confidence 76543
No 93
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=61.11 E-value=39 Score=29.48 Aligned_cols=108 Identities=14% Similarity=0.060 Sum_probs=55.3
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 139 (401)
.+.+..+++.|++.+.++..+.........+..+..+ .+.-|.. . -+.+ +.+. +... +++.+-+.
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~-------~~~~~~~--l--~~~~--~~~~-a~~~-g~~~vh~~ 79 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALREL-------CRKYGVP--L--IIND--RVDL-ALAV-GADGVHLG 79 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH-------HHHhCCe--E--EEeC--hHHH-HHHc-CCCEEecC
Confidence 5778999999999998875432222211111111110 0111211 1 1222 2222 2222 45555554
Q ss_pred CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 140 LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 140 ~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
..+.. .. .+..+.+.+..+-..+.+.+|++ .+++.|+|.|++.
T Consensus 80 ~~~~~---~~-~~~~~~~~~~~~g~~~~t~~~~~---~~~~~g~d~i~~~ 122 (196)
T cd00564 80 QDDLP---VA-EARALLGPDLIIGVSTHSLEEAL---RAEELGADYVGFG 122 (196)
T ss_pred cccCC---HH-HHHHHcCCCCEEEeeCCCHHHHH---HHhhcCCCEEEEC
Confidence 44432 22 22333344556777778887765 4567899999885
No 94
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=60.72 E-value=22 Score=33.94 Aligned_cols=115 Identities=11% Similarity=0.122 Sum_probs=59.9
Q ss_pred CchhHhHHHHHhCCcEEEEcC---cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCC
Q 015764 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQA 133 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~~~~~ 133 (401)
.-.+.+..+.+.|+|+++++. +..+...++-+ .+++.|.+.+..+.-.+ .+.++.+.. ..
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~-------------~~~~~Gl~~~~~v~p~T~~e~l~~~~~---~~ 152 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVE-------------IIKNKGLKPVFFTSPKFPDLLIHRLSK---LS 152 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHH-------------HHHHcCCCEEEEECCCCCHHHHHHHHH---hC
Confidence 445668899999999999973 21112211111 12344666555544444 444444444 33
Q ss_pred CeEE-Ee---CCCCeeeeh-hhhhhcccCCC--ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 134 ENIV-ID---LPDWQVIPA-ENIVASFQGSG--KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 134 ~~vv-v~---~~DW~iIPl-ENliA~~q~~~--~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+.++ +. ..+.+.+|- .+.+..+.... ..|+ ..+++.++++ .+++.|+||+|+-+.
T Consensus 153 ~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~---~~~~~gaD~vvvGSa 216 (244)
T PRK13125 153 PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDAR---DALSAGADGVVVGTA 216 (244)
T ss_pred CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHH---HHHHcCCCEEEECHH
Confidence 4333 31 123343322 33444443221 1233 2356666665 556899999998763
No 95
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=60.66 E-value=22 Score=35.80 Aligned_cols=118 Identities=19% Similarity=0.162 Sum_probs=64.2
Q ss_pred EeCchhHhHHHHHhCCcEEEEcCcc--hh-hHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 015764 56 WTESKQVMTAAVERGWNTFVFLSEN--QQ-LAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (401)
Q Consensus 56 w~~~K~~vt~AlEsG~~~~v~~~~~--~~-~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 132 (401)
+.+.++.+.+.+|.|++.|.++..+ .+ ..+.+..+..-.| +..+. ...+.++++...+.. ..
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p------------~v~Vi-~G~v~t~~~A~~l~~--aG 156 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYP------------NVDVI-AGNVVTAEAARDLID--AG 156 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCC------------CceEE-ECCCCCHHHHHHHHh--cC
Confidence 3466889999999999998876421 11 1111111111000 11111 135777777555543 36
Q ss_pred CCeEEEeC-----------CCCe---eeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 133 AENIVIDL-----------PDWQ---VIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 133 ~~~vvv~~-----------~DW~---iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+|.+++.. .+|- .-.+.++...+...+..|++ .+.+..++..+ |+.|+|||++-+.
T Consensus 157 aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kA---la~GA~~VmiGt~ 228 (325)
T cd00381 157 ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKA---LAAGADAVMLGSL 228 (325)
T ss_pred CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH---HHcCCCEEEecch
Confidence 78887721 0121 11223333333333456887 67777766554 5689999998654
No 96
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=60.60 E-value=42 Score=30.38 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=61.0
Q ss_pred chhHhHHHHHhCCcEEEEcCcc---hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
-.+.+..+++.|++.+.++..+ .++.+...++..+. .+.+.+ +-|.+.-++ +.. -+++-
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~----------~~~~~~----liin~~~~l---a~~-~~~dG 75 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELC----------QKYGVP----LIINDRVDL---ALE-LGADG 75 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHH----------HHTTGC----EEEES-HHH---HHH-CT-SE
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHh----------hcceEE----EEecCCHHH---HHh-cCCCE
Confidence 4688999999999999998744 33333233332211 011111 124443332 221 24567
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 136 vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+=+...|. |....-..+ +.+..|-+.++|.+|++.+ .+.|+|=|.+.|=
T Consensus 76 vHl~~~~~---~~~~~r~~~-~~~~~ig~S~h~~~e~~~a---~~~g~dYv~~gpv 124 (180)
T PF02581_consen 76 VHLGQSDL---PPAEARKLL-GPDKIIGASCHSLEEAREA---EELGADYVFLGPV 124 (180)
T ss_dssp EEEBTTSS---SHHHHHHHH-TTTSEEEEEESSHHHHHHH---HHCTTSEEEEETS
T ss_pred EEeccccc---chHHhhhhc-ccceEEEeecCcHHHHHHh---hhcCCCEEEECCc
Confidence 77766665 444444433 2355788899999996554 4899999999764
No 97
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=60.39 E-value=8.5 Score=37.23 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=39.4
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeEE-EEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEVI-VVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~pggkT~YLSEL~sG~eVL-vVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|||-+-. |-+-=++..-|.-|+||++|+.||+|+ +...-|+.-.. . +.+|+++|=+
T Consensus 44 ~rpySias~~~~~~~i~l~vk~~G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~-----~-~~~~~llIaG 106 (281)
T PRK06222 44 RIPLTIADYDREKGTITIVFQAVGKSTRKLAELKEGDSILDVVGPLGKPSEI-----E-KFGTVVCVGG 106 (281)
T ss_pred ceeeEeeEEcCCCCEEEEEEEeCCcHHHHHhcCCCCCEEeeEEcCCCCCccc-----C-CCCeEEEEeC
Confidence 46777632 223344555688999999999999995 99999985321 1 2468877744
No 98
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=60.20 E-value=12 Score=35.72 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=40.9
Q ss_pred CCCeeeecCC---ceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 270 SRPFRVNAGP---VHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 270 ~RPFRVNAGa---VHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|||.+.... ..=+|..-|..|.||..|+.||+|.+-...|+.- ..-+ ...||+++|=+
T Consensus 46 ~~pySi~~~~~~~l~~~Vk~~G~~S~~L~~l~~Gd~v~i~gP~G~~f--~~~~--~~~~~~llIAg 107 (261)
T TIGR02911 46 EAPISVSGIGEGYIDLTIRRVGKVTDEVFTLKEGDNLFLRGPYGNGF--DVDN--YKHKELVVVAG 107 (261)
T ss_pred ccceecCCCCCCeEEEEEEeCchhhHHHHcCCCCCEEEEecCCCCCc--ccCc--cCCceEEEEec
Confidence 3777775532 3445555688899999999999999988888731 1111 13589888855
No 99
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=59.84 E-value=33 Score=35.96 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=70.8
Q ss_pred CchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 015764 58 ESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 137 (401)
++.+.+.+.+|.|+|.|.++.-|......+..|..|..-+ + +..+.+ ..|.++++...+.. ..+|.+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~-------~--~~~vi~-G~v~t~~~a~~l~~--aGad~i~ 291 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTY-------P--DLDIIA-GNVATAEQAKALID--AGADGLR 291 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhC-------C--CCCEEE-EeCCCHHHHHHHHH--hCCCEEE
Confidence 4578888999999999999874321112222232222100 0 122222 47889888666554 2567775
Q ss_pred Ee-C----------CCCee---eehhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 138 ID-L----------PDWQV---IPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 138 v~-~----------~DW~i---IPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
+. + .+|-+ =.+.++...++..+..|+| .+++..|+..| |+.|+|.|++-+
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kA---la~GA~~V~~G~ 357 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKA---LAAGADAVMLGS 357 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 53 1 13433 3334454444555678999 89999998665 566999999865
No 100
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=59.83 E-value=36 Score=34.00 Aligned_cols=109 Identities=9% Similarity=0.083 Sum_probs=60.2
Q ss_pred chhHhHHHHHhCCcEEEEcCcch-hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 137 (401)
.++.+..++|.|++.|.+...+. +.++.+. ..|.. ++..+.+.++...+.. ..+|.++
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk-----------------~~g~~--v~~~v~s~~~a~~a~~--~GaD~Iv 134 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIPRLK-----------------ENGVK--VIPVVASVALAKRMEK--AGADAVI 134 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHHHHH-----------------HcCCE--EEEEcCCHHHHHHHHH--cCCCEEE
Confidence 36778889999999888754322 1222222 22322 3446788776544433 3688999
Q ss_pred EeCCCCe----eeehhhhhhcccCC-CceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 138 IDLPDWQ----VIPAENIVASFQGS-GKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 138 v~~~DW~----iIPlENliA~~q~~-~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+.+.+.. -.|.-.++.++... +..|++. +.|.+++ ..+|+.|+|||++-+.
T Consensus 135 v~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~---~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 135 AEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGM---AAAFALGAEAVQMGTR 192 (307)
T ss_pred EECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHH---HHHHHcCCCEeecchH
Confidence 8653111 12333333333211 2345543 5555554 4555679999998763
No 101
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=59.48 E-value=20 Score=36.42 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=35.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
.+|..+|.|.+||+. +++.|+|.|+|+.=+|++++++.+.+
T Consensus 209 ~kIeVEv~sleea~e---a~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 209 VPVEVEVENLDELDQ---ALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred CCEEEEeCCHHHHHH---HHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 579999999999865 56899999999999999998777754
No 102
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=59.42 E-value=26 Score=31.53 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=17.8
Q ss_pred CchhHhHHHHHhCCcEEEEcCc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
...+.+..+.+.|+|++++..+
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~ 88 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPE 88 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccC
Confidence 3456788888999999998765
No 103
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=59.39 E-value=62 Score=26.31 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=44.8
Q ss_pred EEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcc----cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASF----QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 113 ~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~----q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
.+...++++.++++-. .+++.+++...|. -+|+.+.. .+...++++.+.+.+.++.+-. .|+|-|+.
T Consensus 45 i~gd~~~~~~l~~a~i--~~a~~vv~~~~~d----~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~---~g~d~vi~ 115 (116)
T PF02254_consen 45 IYGDATDPEVLERAGI--EKADAVVILTDDD----EENLLIALLARELNPDIRIIARVNDPENAELLRQ---AGADHVIS 115 (116)
T ss_dssp EES-TTSHHHHHHTTG--GCESEEEEESSSH----HHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH---TT-SEEEE
T ss_pred ccccchhhhHHhhcCc--cccCEEEEccCCH----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH---CCcCEEEC
Confidence 4445667777766643 3677888876654 56654422 1335799999999999888744 89998875
No 104
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=59.16 E-value=9.2 Score=35.59 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=40.3
Q ss_pred CCCCeeee-----cCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 269 ASRPFRVN-----AGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 269 a~RPFRVN-----AGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
..|||-+- .|-+.=.+..-|..|+||..++.||+|.+....|+.-. . -+ +.+|++||=+
T Consensus 42 ~~rpySi~s~~~~~~~l~l~i~~~G~~t~~l~~~~~G~~l~i~gP~G~~~~--~--~~-~~~~~lliag 105 (243)
T cd06192 42 ERIPLSLAGVDPEEGTISLLVEIRGPKTKLIAELKPGEKLDVMGPLGNGFE--G--PK-KGGTVLLVAG 105 (243)
T ss_pred eeeeeEeeecCCCCCEEEEEEEEcCchHHHHHhCCCCCEEEEEccCCCCCc--c--CC-CCCEEEEEeC
Confidence 35777762 23344455556888999999999999999999886421 1 01 3678887744
No 105
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=58.67 E-value=32 Score=34.34 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=21.8
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 015764 165 ISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (401)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev 196 (401)
.+.+++||..+ +|.|+|||++.+ +||..+
T Consensus 183 GI~tpeda~~A---melGAdgVlV~SAIt~a~dP~~m 216 (248)
T cd04728 183 GIGTPSDAAQA---MELGADAVLLNTAIAKAKDPVAM 216 (248)
T ss_pred CCCCHHHHHHH---HHcCCCEEEEChHhcCCCCHHHH
Confidence 46788988765 569999999865 567654
No 106
>PRK00208 thiG thiazole synthase; Reviewed
Probab=58.50 E-value=33 Score=34.23 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=22.6
Q ss_pred EEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHHH
Q 015764 164 AISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAVL 197 (401)
Q Consensus 164 a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev~ 197 (401)
+.+.+++||..+ +|.|+|||++.+ +||..+.
T Consensus 182 aGI~tpeda~~A---melGAdgVlV~SAItka~dP~~ma 217 (250)
T PRK00208 182 AGIGTPSDAAQA---MELGADAVLLNTAIAVAGDPVAMA 217 (250)
T ss_pred CCCCCHHHHHHH---HHcCCCEEEEChHhhCCCCHHHHH
Confidence 346788888765 568999999865 5676543
No 107
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=58.48 E-value=1.5e+02 Score=27.03 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=15.2
Q ss_pred HhHHHHHhCCcEEEEcCc
Q 015764 62 VMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 62 ~vt~AlEsG~~~~v~~~~ 79 (401)
.+..+.+.|+|.+.+..+
T Consensus 68 ~~~~~~~~Gad~i~vh~~ 85 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGV 85 (206)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 578899999999887764
No 108
>PLN02765 pyruvate kinase
Probab=58.06 E-value=37 Score=37.09 Aligned_cols=205 Identities=15% Similarity=0.177 Sum_probs=117.8
Q ss_pred CchhHh-HHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCC-eeEEEEEecChhhhhhhccccCCCC
Q 015764 58 ESKQVM-TAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDR-RVGSIIEVSTPQELQQLQPADGQAE 134 (401)
Q Consensus 58 ~~K~~v-t~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk-~v~~~~~v~~~e~~e~~~~~~~~~~ 134 (401)
.|++.+ .-|++-|+|.+-... .+++.+.++.++ +++.|. .+..+.+|.+++-++.+..-...+|
T Consensus 207 kD~~di~~f~~~~~vD~ia~SFVr~a~DI~~~r~~-------------l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sD 273 (526)
T PLN02765 207 KDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREF-------------LSSLGLSQTQIFAKIENVEGLTHFDEILQEAD 273 (526)
T ss_pred hHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-------------HHhcCCCCCcEEEEECCHHHHHHHHHHHHhcC
Confidence 467777 689999999544332 123444444443 222232 4567789999999999888888889
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEE----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFA----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
-++|...|--+ ||+|.+-. .....+.-+|+ ...+-.|+--...+.--|+|+|+|..+.
T Consensus 274 gIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~ 353 (526)
T PLN02765 274 GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGL 353 (526)
T ss_pred EEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEEehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCC
Confidence 99996666543 77777633 22222223443 1234478888889999999999999543
Q ss_pred -H-HHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCC
Q 015764 193 -V-KAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIAS 270 (401)
Q Consensus 193 -~-~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~ 270 (401)
| +.|+-+.+++...+ .. +... .......+ ...+ + +.+-| .+.+|=+ ++|
T Consensus 354 yPveaV~~m~~I~~~aE-~~--~~~~-~~~~~~~~-~~~~-------~-~~~~~-----------aia~sav----~~A- 404 (526)
T PLN02765 354 YPVETISTVGRICAEAE-KV--FNQD-LYFKKTVK-YVGE-------P-MSHLE-----------SIASSAV----RAA- 404 (526)
T ss_pred CHHHHHHHHHHHHHHHH-hh--cchh-hhhhhhhc-cccc-------C-CCHHH-----------HHHHHHH----HHH-
Confidence 3 55666677664321 10 1000 00000000 0000 0 00000 0001100 000
Q ss_pred CCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEc
Q 015764 271 RPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVD 307 (401)
Q Consensus 271 RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd 307 (401)
..+||.+.=.|+.. |..++++|-.++--.|+++-
T Consensus 405 --~~l~a~aIvv~T~s-G~tAr~isk~RP~~pIla~t 438 (526)
T PLN02765 405 --IKVKASVIIVFTSS-GRAARLIAKYRPTMPVLSVV 438 (526)
T ss_pred --hhCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEEe
Confidence 13688888888875 88889999999999999987
No 109
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=56.94 E-value=81 Score=28.31 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=46.5
Q ss_pred ecChhhhhhhccccCCCCeEEEeCC--CCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 015764 117 VSTPQELQQLQPADGQAENIVIDLP--DWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (401)
Q Consensus 117 v~~~e~~e~~~~~~~~~~~vvv~~~--DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (401)
..+.++.-.... ....+.++++.. |.....--+++..++ .....++..... .+......+++.|++|.+.++.+
T Consensus 35 ~~~~~~~~~~~~-~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~-~~~~~~~~a~~~Ga~~yl~K~~~ 112 (216)
T PRK10840 35 FEDSTALINNLP-KLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMN-NNPAILSAVLDLDIEGIVLKQGA 112 (216)
T ss_pred ECCHHHHHHHHH-hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEec-CCHHHHHHHHHCCCeEEEECCCC
Confidence 445544333222 234677777532 211012223444443 234566665544 45566778899999999999999
Q ss_pred HHHHHHH
Q 015764 193 VKAVLAL 199 (401)
Q Consensus 193 ~~ev~~l 199 (401)
+.++.+.
T Consensus 113 ~~~l~~a 119 (216)
T PRK10840 113 PTDLPKA 119 (216)
T ss_pred HHHHHHH
Confidence 9877543
No 110
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=56.77 E-value=48 Score=38.01 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=46.6
Q ss_pred eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec---cceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCce
Q 015764 291 TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES---RPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKA 367 (401)
Q Consensus 291 T~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~---RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~~~~g~~ 367 (401)
+.|+ ++..|.+|+.+|.+|+.+...|-++ +.. .+|+.|+.+. |+.+.+. ++|==++..+|. =..
T Consensus 115 ~e~~-~~~~~~~V~s~d~~~k~~~~~v~~v-~r~~~~~~l~~I~t~~----Grei~vT---~~H~~~v~~~g~----~~~ 181 (858)
T PRK14898 115 HEVC-DLPIEIYALSLDQDEKVHWKRIISV-IRHKANGKLIKIKTES----GRTIRAT---PYHSFVTRKDNE----VIP 181 (858)
T ss_pred ceEE-ecCCCcEEEEECCCCcEEEEEeeeE-EeccCCCcEEEEEeCC----CcEEEEC---CCCeEEEeeCCe----EEE
Confidence 3344 5567999999999998888877776 222 2566666654 5543221 111112222310 122
Q ss_pred eeeeecCCCCEEEEE
Q 015764 368 IPVTSLKVGDEVLLR 382 (401)
Q Consensus 368 vsVt~LK~GD~VL~~ 382 (401)
+..-+||+||.|.+-
T Consensus 182 ~~a~~l~~GD~i~~~ 196 (858)
T PRK14898 182 VEGSELKIGDWLPVV 196 (858)
T ss_pred eeHHhCCCCCEEeee
Confidence 344689999999775
No 111
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=56.69 E-value=23 Score=36.11 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=35.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhh------cccCeEEEecC---------CHHHHHHHHHhh
Q 015764 160 KTVFAISKTPSEAQIFLEALE------QGLGGIVLKVE---------DVKAVLALKEYF 203 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE------~G~DGVvl~~~---------d~~ev~~l~~~~ 203 (401)
.+|..+|.|.+||+.++ + .|+|.|+|+.= +++++++..+.+
T Consensus 204 ~kIeVEv~tleea~ea~---~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~ 259 (308)
T PLN02716 204 MKIEVETRTLEEVKEVL---EYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELI 259 (308)
T ss_pred eeEEEEECCHHHHHHHH---HhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhh
Confidence 57999999999988665 6 79999999999 999888776655
No 112
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=56.51 E-value=14 Score=32.91 Aligned_cols=50 Identities=30% Similarity=0.400 Sum_probs=37.7
Q ss_pred CCceeEEEec--CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 278 GPVHAYVLVP--GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 278 GaVHaYv~~p--ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|-++=++..- |.-|+||.+++.||+|.+....|+... -.-..+|+++|=+
T Consensus 54 ~~~~l~vk~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~-----~~~~~~~~v~ia~ 105 (223)
T cd00322 54 GELELTVKIVPGGPFSAWLHDLKPGDEVEVSGPGGDFFL-----PLEESGPVVLIAG 105 (223)
T ss_pred CeEEEEEEEeCCCchhhHHhcCCCCCEEEEECCCccccc-----CcccCCcEEEEec
Confidence 4566666665 899999999999999999999998641 1123578888855
No 113
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=56.51 E-value=8.7 Score=32.52 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=16.8
Q ss_pred ecCCCCEEEEEecCCCccc
Q 015764 372 SLKVGDEVLLRVQGAARHT 390 (401)
Q Consensus 372 ~LK~GD~VL~~~~~~gRHf 390 (401)
.||+||+|++.-.++|-+|
T Consensus 76 ~Lk~GD~V~ll~~~~gQ~y 94 (100)
T PF10844_consen 76 GLKVGDKVLLLRVQGGQKY 94 (100)
T ss_pred CCcCCCEEEEEEecCCCEE
Confidence 7999999999988887776
No 114
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=56.41 E-value=62 Score=31.03 Aligned_cols=122 Identities=24% Similarity=0.210 Sum_probs=81.2
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
-.+++.+.++.|+..+=++-.+.+-.+.+..+..- .+ +..+| -..|.++++.+.+... .++++|-
T Consensus 22 a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~----------~~--~~~vG-AGTVl~~~~a~~a~~a--GA~Fivs 86 (204)
T TIGR01182 22 ALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKE----------VP--DALIG-AGTVLNPEQLRQAVDA--GAQFIVS 86 (204)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH----------CC--CCEEE-EEeCCCHHHHHHHHHc--CCCEEEC
Confidence 46788999999999887775443222222222110 01 12233 3579999997776653 5677754
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhhc
Q 015764 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYFD 204 (401)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~ev~~l~~~~~ 204 (401)
-..| ++++...+..+.-.+..+-|+.|+.. +++.|+|-|=+-|-+ ++-++.|+..+.
T Consensus 87 P~~~------~~v~~~~~~~~i~~iPG~~TptEi~~---A~~~Ga~~vKlFPA~~~GG~~yikal~~plp 147 (204)
T TIGR01182 87 PGLT------PELAKHAQDHGIPIIPGVATPSEIML---ALELGITALKLFPAEVSGGVKMLKALAGPFP 147 (204)
T ss_pred CCCC------HHHHHHHHHcCCcEECCCCCHHHHHH---HHHCCCCEEEECCchhcCCHHHHHHHhccCC
Confidence 3333 36777777777789999999999764 578999999988876 566777777663
No 115
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=56.41 E-value=14 Score=36.48 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=97.3
Q ss_pred chhHhHHHHHhCCcEEEEcCc------chhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 015764 59 SKQVMTAAVERGWNTFVFLSE------NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~------~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 132 (401)
-.++...--+.|+.++=+-.| +.+..+...+.-.+ |+.-+|. |-++.++.+... .+
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~-PvL~KDF---------------Iid~~QI~ea~~--~G 124 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKI-PVLRKDF---------------ILDEIQIREARA--FG 124 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCC-CEEeccc---------------cCCHHHHHHHHH--cC
Confidence 356666677888987544332 12333333322111 4333322 667777666554 36
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccce
Q 015764 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNL 212 (401)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~ 212 (401)
+|-+++...--+---|++++...+.-+-..+.+|+|.+|++.++. .|++-|-+...|.....--... ...-
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~---~ga~iiGINnRdL~t~~vd~~~------~~~L 195 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALD---CGAEIIGINTRDLDTFQIHQNL------VEEV 195 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHh---CCCCEEEEeCCCCccceECHHH------HHHH
Confidence 777777655444334889999888888899999999999998654 6999998988876532100000 0011
Q ss_pred eeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEecc
Q 015764 213 LSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSF 251 (401)
Q Consensus 213 l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~ 251 (401)
.++.+..+..|..=|+..+--+.-.. +--.|+|||.+
T Consensus 196 ~~~ip~~~~~IsESGI~t~~d~~~l~--~~~davLvG~~ 232 (247)
T PRK13957 196 AAFLPPNIVKVGESGIESRSDLDKFR--KLVDAALIGTY 232 (247)
T ss_pred HhhCCCCcEEEEcCCCCCHHHHHHHH--HhCCEEEECHH
Confidence 22333455666667777654333322 22578999875
No 116
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=55.98 E-value=1.2e+02 Score=28.87 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=64.2
Q ss_pred EEEEEe--CchhHhHHHHHhCCcEEEEcCcc------hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhh
Q 015764 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQEL 123 (401)
Q Consensus 52 ~vWiw~--~~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~ 123 (401)
.+|++- ++.+-+...++.|++.+++.... .+.++..++=..+--|-..++... ..-...+++++
T Consensus 80 ~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~--------~~~~~~~~~~~ 151 (233)
T cd04723 80 GLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLL--------KPTDFIGPEEL 151 (233)
T ss_pred CEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeec--------cccCcCCHHHH
Confidence 367766 57899999999999999988642 222333432111111222333222 00012345544
Q ss_pred hhhccccCCCCeEEEeCCCC----eeeehhhhhhccc-CCCceE--EEEcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 124 QQLQPADGQAENIVIDLPDW----QVIPAENIVASFQ-GSGKTV--FAISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 124 e~~~~~~~~~~~vvv~~~DW----~iIPlENliA~~q-~~~~~l--~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
.+..... ++.+++..-|= +=..+ .++.++. .....+ -..+++.++++.++. .|++||++-+
T Consensus 152 ~~~~~~~--~~~li~~di~~~G~~~g~~~-~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~---~G~~~vivGs 219 (233)
T cd04723 152 LRRLAKW--PEELIVLDIDRVGSGQGPDL-ELLERLAARADIPVIAAGGVRSVEDLELLKK---LGASGALVAS 219 (233)
T ss_pred HHHHHHh--CCeEEEEEcCccccCCCcCH-HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH---cCCCEEEEeh
Confidence 3333222 44455533211 11112 2222221 122233 345899999997765 5999999865
No 117
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=55.86 E-value=46 Score=31.98 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=66.5
Q ss_pred HhHHHHHhCCcEEEEcCc-----chhhHhhccceeeee-----eeeecCCccccCCCCeeEEEEEecChhhhhhhccc--
Q 015764 62 VMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLD-----PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA-- 129 (401)
Q Consensus 62 ~vt~AlEsG~~~~v~~~~-----~~~~~~~~~~i~~i~-----~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~-- 129 (401)
.+..|++.|++.+-+... +.+..++...+..++ |+++. +..+|..++. .+++...+++..
T Consensus 95 ~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~----~~~~Gvh~~~----~~~~~~~~~~~~a~ 166 (258)
T TIGR01949 95 TVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAM----MYPRGPHIDD----RDPELVAHAARLGA 166 (258)
T ss_pred eHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEE----EeccCccccc----ccHHHHHHHHHHHH
Confidence 477899999997665432 123333333332221 22220 1122322221 234444443221
Q ss_pred cCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE--EcC--CHHHHHH-HHHHhhcccCeEEE-----ecCCH-HHHHH
Q 015764 130 DGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA--ISK--TPSEAQI-FLEALEQGLGGIVL-----KVEDV-KAVLA 198 (401)
Q Consensus 130 ~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a--~v~--~~~eA~~-al~~LE~G~DGVvl-----~~~d~-~ev~~ 198 (401)
...+||+-..+. ..+|.+-...+..+..|++ ..+ |.+++.. +-++++.|++|+.+ ..+|| ..+++
T Consensus 167 ~~GADyikt~~~----~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~ 242 (258)
T TIGR01949 167 ELGADIVKTPYT----GDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKA 242 (258)
T ss_pred HHCCCEEeccCC----CCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHH
Confidence 246899887543 2444443332223344444 455 5666644 44788999999975 45565 45555
Q ss_pred HHHhhc
Q 015764 199 LKEYFD 204 (401)
Q Consensus 199 l~~~~~ 204 (401)
++.++.
T Consensus 243 l~~~i~ 248 (258)
T TIGR01949 243 VCKIVH 248 (258)
T ss_pred HHHHHh
Confidence 666654
No 118
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=55.72 E-value=1.3e+02 Score=27.88 Aligned_cols=99 Identities=23% Similarity=0.401 Sum_probs=57.6
Q ss_pred eEEEEEEEEEcCCcc-eEEEeec----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEE
Q 015764 216 MKATVTRVDVAGMGD-RVCVDLC----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVL 285 (401)
Q Consensus 216 ~~atVt~V~~vGmGD-RVCVDtc----sll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaYv~ 285 (401)
-.++|++++++.-.- ++++..- .-++||+=+.+. .. ++-..|||-+- .|-++=++.
T Consensus 7 ~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~----------~~----~~~~~r~ySi~s~~~~~~~l~l~i~ 72 (238)
T cd06211 7 FEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQ----------AP----GYEGTRAFSIASSPSDAGEIELHIR 72 (238)
T ss_pred EeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEE----------cC----CCCCccccccCCCCCCCCEEEEEEE
Confidence 368888988886322 1233321 134555544432 11 11135777763 244444555
Q ss_pred e-cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 015764 286 V-PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 286 ~-pgg-kT~YLS-EL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
. |+| -|.||. .|+.||.|.+....|+...- .-..+|+++|=+-
T Consensus 73 ~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~v~iagG 118 (238)
T cd06211 73 LVPGGIATTYVHKQLKEGDELEISGPYGDFFVR-----DSDQRPIIFIAGG 118 (238)
T ss_pred ECCCCcchhhHhhcCCCCCEEEEECCccceEec-----CCCCCCEEEEeCC
Confidence 4 566 599995 79999999999998875211 1123788887543
No 119
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=55.02 E-value=67 Score=28.30 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=49.0
Q ss_pred CCeEEEEc-CCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCceeeeeecCCCCE
Q 015764 300 GKEVIVVD-QKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDE 378 (401)
Q Consensus 300 G~eVLvVd-~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~~~~g~~vsVt~LK~GD~ 378 (401)
|+.||+-. .||---.++|=..- .+-.+|||-.. ++. ...+..+.|.+-.. . --.|++||.
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~--~~~~~lV~f~~----~~~--~~v~~~~iI~~~~~----------~-~~~L~~GD~ 61 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV--SSGQFLVEFDD----GDT--QEVPISDIIALSDA----------M-RHSLQVGDK 61 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc--CCCEEEEEECC----CCE--EEeChHHeEEccCc----------c-cCcCCCCCE
Confidence 67788865 77876555543333 66778888833 442 44566666666422 2 567999999
Q ss_pred EEEEecCCCcccc
Q 015764 379 VLLRVQGAARHTG 391 (401)
Q Consensus 379 VL~~~~~~gRHfG 391 (401)
||..-+.....++
T Consensus 62 VLA~~~~~~~~Y~ 74 (124)
T PF15057_consen 62 VLAPWEPDDCRYG 74 (124)
T ss_pred EEEecCcCCCEEe
Confidence 9999887777776
No 120
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=54.08 E-value=65 Score=28.98 Aligned_cols=78 Identities=13% Similarity=0.109 Sum_probs=47.7
Q ss_pred CeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccCe
Q 015764 109 RRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLGG 185 (401)
Q Consensus 109 k~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a---~v~~~~eA~~al~~LE~G~DG 185 (401)
..+..-..+.++.....-.....+++.+++...... -.++.++..++..+.+++. ...|++|+. .++..|+|-
T Consensus 54 ~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~-~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~---~~~~~~~d~ 129 (202)
T cd04726 54 KIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPL-STIKKAVKAAKKYGKEVQVDLIGVEDPEKRA---KLLKLGVDI 129 (202)
T ss_pred CEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCH-HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHH---HHHHCCCCE
Confidence 344444456665421111112336888988776643 3467788887766667664 455666665 478889999
Q ss_pred EEEec
Q 015764 186 IVLKV 190 (401)
Q Consensus 186 Vvl~~ 190 (401)
|++.+
T Consensus 130 v~~~~ 134 (202)
T cd04726 130 VILHR 134 (202)
T ss_pred EEEcC
Confidence 99853
No 121
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=54.07 E-value=15 Score=36.49 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=35.3
Q ss_pred CCceeEEEe-cCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 278 GPVHAYVLV-PGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 278 GaVHaYv~~-pggk-T~YL-SEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|-..=+|.. |+|+ |.|| +.|+.||.|.+-...|+.. . .-..+|+++|=+
T Consensus 166 ~~l~~~ik~~~~G~~s~~L~~~l~~G~~v~i~gP~G~f~---l---~~~~~~~vliag 217 (340)
T PRK11872 166 NQLQFLIRLLPDGVMSNYLRERCQVGDEILFEAPLGAFY---L---REVERPLVFVAG 217 (340)
T ss_pred CeEEEEEEECCCCcchhhHhhCCCCCCEEEEEcCcceeE---e---CCCCCcEEEEeC
Confidence 445555554 7776 7899 5799999999999999753 1 123589988854
No 122
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=53.66 E-value=17 Score=33.95 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=25.7
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEc
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~ 77 (401)
.+...+|+|| .+++.|..+++.|+|+|+.+
T Consensus 202 ~~gl~v~~wTvn~~~~~~~l~~~gvdgiiTD 232 (234)
T cd08570 202 KNGKKVFVWTVNTEEDMRYAIRLGVDGVITD 232 (234)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEEeC
Confidence 4567899999 46899999999999999865
No 123
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=53.52 E-value=1.1e+02 Score=29.89 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=56.6
Q ss_pred eeeeeEEEEEEEEEcCCcc-----eEEEeecCCCCCCceEEEeccCceEEE-EeeccccCCCCCCCCeeeec----CCce
Q 015764 212 LLSLMKATVTRVDVAGMGD-----RVCVDLCSLMRPGEGLLVGSFARGLFL-VHSECLESNYIASRPFRVNA----GPVH 281 (401)
Q Consensus 212 ~l~L~~atVt~V~~vGmGD-----RVCVDtcsll~~GEGmLVGS~s~glFL-VhsEt~es~Yva~RPFRVNA----GaVH 281 (401)
.....+++|++.+.+.-+. ++++-.-.-.. +|.-.-++..|=|+ |... .-.-.|||-+-- |-+.
T Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~--~~~~~~~~~pGQ~v~v~~~----g~~~~R~YSias~p~~g~l~ 115 (289)
T cd06201 42 LPRTKALELVERKDYGAAVQAPTAILRFKPAKRKL--SGKGLPSFEAGDLLGILPP----GSDVPRFYSLASSSSDGFLE 115 (289)
T ss_pred CCCccceEEEeeeecCCCCCCccEEEEEeCCCccc--ccCCCCCcCccCEEEEecC----CCCCCceEecCCCCCCCeEE
Confidence 4467788899999886532 34443322000 01111122222222 2111 111236666533 3344
Q ss_pred eEEEe-cCC-ceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 282 AYVLV-PGG-KTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 282 aYv~~-pgg-kT~YLSEL~sG~eVLvV-d~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
=.|.. |+| -|.||.+|+.||+|-+. ...|.-.. +-..+|++||=+
T Consensus 116 l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~------~~~~~~lvlIAg 163 (289)
T cd06201 116 ICVRKHPGGLCSGYLHGLKPGDTIKAFIRPNPSFRP------AKGAAPVILIGA 163 (289)
T ss_pred EEEEeCCCccchhhHhhCCCcCEEEEEeccCCCccC------CCCCCCEEEEec
Confidence 44543 444 57899999999999875 45665431 123578888743
No 124
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.31 E-value=93 Score=29.64 Aligned_cols=113 Identities=16% Similarity=0.206 Sum_probs=65.2
Q ss_pred CchhHhHHHHHhCCcEEEEcCcch---------hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSENQ---------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQP 128 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~~---------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~ 128 (401)
+--+++....+.|++.+.+-.-++ +..+++.+... -|+.+.+| |.+.++.+.+..
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~-ipv~~~GG---------------i~s~~~~~~~l~ 94 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVF-IPLTVGGG---------------IRSVEDARRLLR 94 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCC-CCEEeeCC---------------CCCHHHHHHHHH
Confidence 345777888899999876653221 23333333211 14444444 788898888765
Q ss_pred ccCCCCeEEEeCCCCeee-ehhhhhhcccCCCceEEEEcC---------------------CHHHHHHHHHHhhcccCeE
Q 015764 129 ADGQAENIVIDLPDWQVI-PAENIVASFQGSGKTVFAISK---------------------TPSEAQIFLEALEQGLGGI 186 (401)
Q Consensus 129 ~~~~~~~vvv~~~DW~iI-PlENliA~~q~~~~~l~a~v~---------------------~~~eA~~al~~LE~G~DGV 186 (401)
. .++.+++...-++-. =++++.+.+.. .+++..+. +......+.+..+.|++++
T Consensus 95 -~-Ga~~Viigt~~l~~p~~~~ei~~~~g~--~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~i 170 (253)
T PRK02083 95 -A-GADKVSINSAAVANPELISEAADRFGS--QCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 170 (253)
T ss_pred -c-CCCEEEEChhHhhCcHHHHHHHHHcCC--CCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEE
Confidence 2 478888865332211 13566666521 24444332 2233455566788999999
Q ss_pred EEec
Q 015764 187 VLKV 190 (401)
Q Consensus 187 vl~~ 190 (401)
++++
T Consensus 171 i~~~ 174 (253)
T PRK02083 171 LLTS 174 (253)
T ss_pred EEcC
Confidence 9966
No 125
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=52.95 E-value=39 Score=34.62 Aligned_cols=114 Identities=15% Similarity=0.258 Sum_probs=65.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH----------HHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK----------AVLALKE 201 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~----------ev~~l~~ 201 (401)
+.+.+++.+-+ |-+ +.+++..+.+++..|.|+++|+.+ ++.|+|+|++.-.... -+.++.+
T Consensus 82 ~v~~V~~~~G~----P~~--~~~lk~~Gi~v~~~v~s~~~A~~a---~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~ 152 (320)
T cd04743 82 KPTFALIAGGR----PDQ--ARALEAIGISTYLHVPSPGLLKQF---LENGARKFIFEGRECGGHVGPRSSFVLWESAID 152 (320)
T ss_pred CCcEEEEcCCC----hHH--HHHHHHCCCEEEEEeCCHHHHHHH---HHcCCCEEEEecCcCcCCCCCCCchhhHHHHHH
Confidence 45556555443 322 466777789999999999999774 5789999998755321 1111111
Q ss_pred hhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCC-----C--ceEEEeccCceEEEEeeccc
Q 015764 202 YFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRP-----G--EGLLVGSFARGLFLVHSECL 263 (401)
Q Consensus 202 ~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~-----G--EGmLVGS~s~glFLVhsEt~ 263 (401)
.+.. ... +.....|-=|-.=|++|-=-+...-.|.- | +|+.+|+ -||...||.
T Consensus 153 ~l~~---~~~--~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGT----rFl~t~Es~ 212 (320)
T cd04743 153 ALLA---ANG--PDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGT----AYLFTEEAV 212 (320)
T ss_pred HHHH---hhc--ccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEcc----HHhcchhhc
Confidence 1100 000 00000121223337887655444445544 3 8999996 488888874
No 126
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=52.70 E-value=22 Score=28.07 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=29.1
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES 324 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~ 324 (401)
=+++.|=+.+=.+++.||.|.++|.+|+. .-+||+..-+
T Consensus 18 ~L~~~GV~~~~~~f~~gd~V~i~~~~g~~--ia~G~a~~ss 56 (74)
T PF01472_consen 18 SLFAPGVVEVDGDFRKGDEVAIVDEDGEV--IAVGRANMSS 56 (74)
T ss_dssp EEEGGGEEEEETT--TTSEEEEEETTSSE--EEEEEESSTH
T ss_pred CcchHHhEECCCCcCCCCEEEEEcCCCeE--EEEEEEecCH
Confidence 34567788888889999999999999844 7788876544
No 127
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=52.63 E-value=11 Score=40.94 Aligned_cols=32 Identities=13% Similarity=0.411 Sum_probs=26.3
Q ss_pred eeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 015764 295 SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (401)
Q Consensus 295 SEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLl 328 (401)
.++++||||+|||.+|+. .-|||+++--+-|+
T Consensus 495 ~~IR~~dEV~vv~~~~~l--lavGra~lsg~em~ 526 (540)
T TIGR00432 495 NNIRANDEVLIVNADDEL--LATGKALLCAEEMM 526 (540)
T ss_pred CCCCCCCeEEEEcCCCcE--EEEEehhcCHHHHH
Confidence 479999999999999965 78999987655543
No 128
>PLN02334 ribulose-phosphate 3-epimerase
Probab=52.54 E-value=60 Score=30.57 Aligned_cols=125 Identities=15% Similarity=0.212 Sum_probs=62.4
Q ss_pred hhHhHHHHHhCCcEEEEcCc---chhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC--CC
Q 015764 60 KQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--AE 134 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~--~~ 134 (401)
-+.+..|++.|+|.+.|.-+ +....+.+.. +.+.|..++..+.-.++.+ .+...... .|
T Consensus 78 ~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~--------------i~~~g~~iGls~~~~t~~~--~~~~~~~~~~~D 141 (229)
T PLN02334 78 EDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQ--------------IKSAGMKAGVVLNPGTPVE--AVEPVVEKGLVD 141 (229)
T ss_pred HHHHHHHHHcCCCEEEEeeccccchhHHHHHHH--------------HHHCCCeEEEEECCCCCHH--HHHHHHhccCCC
Confidence 45678889999999966554 1111111111 1233566676554323333 22222234 78
Q ss_pred eEEE---e--CC--CCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHH
Q 015764 135 NIVI---D--LP--DWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLAL 199 (401)
Q Consensus 135 ~vvv---~--~~--DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~-~ev~~l 199 (401)
|+.+ . +. .|....++.+-. +... +..|.+ ..-. ..+.+-++++.|+||+++- .+|+ ..++++
T Consensus 142 yi~~~~v~pg~~~~~~~~~~~~~i~~-~~~~~~~~~I~a-~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 142 MVLVMSVEPGFGGQSFIPSMMDKVRA-LRKKYPELDIEV-DGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred EEEEEEEecCCCccccCHHHHHHHHH-HHHhCCCCcEEE-eCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 8854 2 22 243334555432 2211 123333 2112 2445667889999999764 4565 344545
Q ss_pred HHhh
Q 015764 200 KEYF 203 (401)
Q Consensus 200 ~~~~ 203 (401)
++.+
T Consensus 219 ~~~~ 222 (229)
T PLN02334 219 RASV 222 (229)
T ss_pred HHHH
Confidence 5444
No 129
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=52.45 E-value=1.7e+02 Score=27.73 Aligned_cols=113 Identities=5% Similarity=0.060 Sum_probs=60.7
Q ss_pred chhHhHHHHHhCCc--EEEEcCcc-----hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 015764 59 SKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (401)
Q Consensus 59 ~K~~vt~AlEsG~~--~~v~~~~~-----~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 131 (401)
+.+-+..|.+.|+| +|||.+.. .+.++++.+. +++.-+.|++++ -.+++++.+++...
T Consensus 10 ~~eda~~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~-------------~~~~~~~VgVf~-~~~~~~i~~~~~~~- 74 (207)
T PRK13958 10 TIKDVTAASQLPIDAIGFIHYEKSKRHQTITQIKKLASA-------------VPNHIDKVCVVV-NPDLTTIEHILSNT- 74 (207)
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCcccCCHHHHHHHHHh-------------CCCCCCEEEEEe-CCCHHHHHHHHHhC-
Confidence 56778899999999 58875433 3555555442 112234566542 33666666666544
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+-+.+-+++.-. . ..++.+... .-+++....-.++....+.-.+..+|.+||++.
T Consensus 75 ~~d~vQLHG~e~----~-~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~ 131 (207)
T PRK13958 75 SINTIQLHGTES----I-DFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTP 131 (207)
T ss_pred CCCEEEECCCCC----H-HHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCC
Confidence 458888887522 2 233443321 135555543311111112222335899999974
No 130
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=52.42 E-value=31 Score=34.20 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=62.6
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEe-cChhhhhhhccccCCCCeEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEV-STPQELQQLQPADGQAENIV 137 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v-~~~e~~e~~~~~~~~~~~vv 137 (401)
-++.+..|-|+|+|++|+|.=-.|...++... .++.|-....++.- ++++.++.++......=|.+
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~-------------~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~v 170 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPEESEELREA-------------AKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLV 170 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHH-------------HHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEE
T ss_pred hHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH-------------HHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEee
Confidence 35688899999999999986222333333222 11223333333344 45666666666543332332
Q ss_pred E-eC-CCC-ee--eehhhhhhcccCCCc-eEEE--EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 138 I-DL-PDW-QV--IPAENIVASFQGSGK-TVFA--ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 138 v-~~-~DW-~i--IPlENliA~~q~~~~-~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
- .+ ++= +- -.+++.++.+..... -|+. .+++.++|+.+. .|+|||++-+.
T Consensus 171 s~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~----~~aDGvIVGSa 228 (259)
T PF00290_consen 171 SRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA----AGADGVIVGSA 228 (259)
T ss_dssp SSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH----TTSSEEEESHH
T ss_pred ccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH----ccCCEEEECHH
Confidence 1 11 111 12 246777777654432 3333 478888888665 89999999765
No 131
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=52.23 E-value=1.2e+02 Score=34.34 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=69.5
Q ss_pred chhHhHHHHHhCCcEEEEcCc---c---hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 015764 59 SKQVMTAAVERGWNTFVFLSE---N---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~---~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 132 (401)
++-.+-.|-..|+|+|+.--. + .++.+.-.++ |-. ++++|-+.+|++.+... .
T Consensus 122 d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~l-----------------Gme--~LvEvh~~~el~~a~~~--g 180 (695)
T PRK13802 122 TDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHEL-----------------GMT--VLVETHTREEIERAIAA--G 180 (695)
T ss_pred CHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHc-----------------CCe--EEEEeCCHHHHHHHHhC--C
Confidence 456677788889998875421 0 1111111122 322 67899999998886653 5
Q ss_pred CCeEEEeCCCCe--eeeh---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEe-----cCCHHH-HHHH
Q 015764 133 AENIVIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLK-----VEDVKA-VLAL 199 (401)
Q Consensus 133 ~~~vvv~~~DW~--iIPl---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~~e-v~~l 199 (401)
++.+=|+-+|-+ -|-+ ++|...+.. +.-+++ .+++++|++.+. +.|+||||+- .+||.. +++|
T Consensus 181 a~iiGINnRdL~tf~vd~~~t~~L~~~ip~-~~~~VsESGI~~~~d~~~l~---~~G~davLIGeslm~~~dp~~~~~~l 256 (695)
T PRK13802 181 AKVIGINARNLKDLKVDVNKYNELAADLPD-DVIKVAESGVFGAVEVEDYA---RAGADAVLVGEGVATADDHELAVERL 256 (695)
T ss_pred CCEEEEeCCCCccceeCHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHH---HCCCCEEEECHHhhCCCCHHHHHHHH
Confidence 677778887655 2333 233333321 222333 356778877665 6999999974 466643 4444
Q ss_pred HH
Q 015764 200 KE 201 (401)
Q Consensus 200 ~~ 201 (401)
..
T Consensus 257 ~~ 258 (695)
T PRK13802 257 VK 258 (695)
T ss_pred Hh
Confidence 33
No 132
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=51.96 E-value=24 Score=33.35 Aligned_cols=85 Identities=18% Similarity=0.046 Sum_probs=50.9
Q ss_pred EEEEecChhhhhhhccccCC--CCeEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 113 SIIEVSTPQELQQLQPADGQ--AENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 113 ~~~~v~~~e~~e~~~~~~~~--~~~vvv~~~DW~iIPlENliA~~q~~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
..+...++++...++..+-+ ...+=+..+++ .....|+++... +..++-.+.+.-....+-.+++.|+|+++..
T Consensus 14 ~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp 90 (206)
T PRK09140 14 AILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP 90 (206)
T ss_pred EEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence 44556677877776665544 44444444444 444455555332 2235555555444445556788999999999
Q ss_pred cCCHHHHHHHH
Q 015764 190 VEDVKAVLALK 200 (401)
Q Consensus 190 ~~d~~ev~~l~ 200 (401)
..|++-++..+
T Consensus 91 ~~~~~v~~~~~ 101 (206)
T PRK09140 91 NTDPEVIRRAV 101 (206)
T ss_pred CCCHHHHHHHH
Confidence 99887665433
No 133
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=51.80 E-value=15 Score=37.11 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=42.6
Q ss_pred CCCCCCCCeeeec------CCceeEEEe-----------cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 015764 265 SNYIASRPFRVNA------GPVHAYVLV-----------PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (401)
Q Consensus 265 s~Yva~RPFRVNA------GaVHaYv~~-----------pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (401)
.|...+|||-+-. |-+|=.|.. +|--|.||++|+.||+|-+.-..|.-+.- .-..+|+
T Consensus 159 lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp-----~~~~~pl 233 (382)
T cd06207 159 CPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKSSFKLP-----KDPKKPI 233 (382)
T ss_pred CcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECCcccCC-----CCCCCCE
Confidence 3778888888743 334444432 25567999999999999998877754211 1126899
Q ss_pred eEEEE
Q 015764 328 ILVEA 332 (401)
Q Consensus 328 lLVeA 332 (401)
+||=+
T Consensus 234 ImIa~ 238 (382)
T cd06207 234 IMVGP 238 (382)
T ss_pred EEEcC
Confidence 99854
No 134
>PF05203 Hom_end_hint: Hom_end-associated Hint; InterPro: IPR007868 Homing endonucleases are encoded by mobile DNA elements that are found inserted within host genes in all domains of life. The crystal structure of the homing nuclease PI-Sce [] revealed two domains: an endonucleolytic centre resembling the C-terminal domain of Drosophila melanogaster Hedgehog protein, and a second domain containing the protein-splicing active site. This domain corresponds to the protein-splicing domain.; GO: 0030908 protein splicing; PDB: 1LWT_A 1UM2_B 1JVA_B 1GPP_A 1VDE_A 1EF0_B 1DFA_A 1LWS_A.
Probab=51.48 E-value=16 Score=35.22 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=28.7
Q ss_pred EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEe-eeeEEEeccceeEEEEEe
Q 015764 283 YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAV-VGRVKIESRPLILVEAKT 334 (401)
Q Consensus 283 Yv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~-VGRvKIE~RPLlLVeAe~ 334 (401)
=|+|.+|..+-..+++.||+||. .||+.|+++ |-| =++.|.-|.-..
T Consensus 7 ~vlmaDG~~k~ie~i~~Gd~vmg--~dg~~r~V~~~~~---g~~~my~i~~~~ 54 (215)
T PF05203_consen 7 RVLMADGSIKPIEDIKIGDQVMG--PDGRPRRVTNVPR---GREEMYRITQKT 54 (215)
T ss_dssp EEEBTTS-EEEGGG--TT-EEEB--TTSSEEEEEE--E---EEEEEEEEEE-S
T ss_pred EEEecCCCeeEEeecccCCEEEC--CCCCcEEEEEecc---cceeEEEEEEcc
Confidence 48999999999999999999875 777776542 322 123466666553
No 135
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=51.38 E-value=1.7e+02 Score=26.87 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=28.8
Q ss_pred CCceeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 288 GGKTCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 288 ggkT~YL-SEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|.-|+|| ..|+.||.|.+-...|.... .-..+|+++|=+
T Consensus 69 G~~s~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~lliag 108 (227)
T cd06213 69 GAFSGWLFGADRTGERLTVRGPFGDFWL------RPGDAPILCIAG 108 (227)
T ss_pred CcchHHHHhcCCCCCEEEEeCCCcceEe------CCCCCcEEEEec
Confidence 4468999 66999999999999997532 113478888754
No 136
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=51.33 E-value=1.4e+02 Score=27.98 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=64.2
Q ss_pred chhHhHHHHHhCCcEEEEcCcc---------hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 015764 59 SKQVMTAAVERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~---------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 129 (401)
-.+++....+.|++.+++-.=+ .+.++++.+... -|+...+| |.+.++.+.+...
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~-~pv~~~GG---------------I~s~~d~~~~l~~ 92 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF-IPLTVGGG---------------IRSLEDARRLLRA 92 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC-CCEEEeCC---------------CCCHHHHHHHHHc
Confidence 3577788888999987665422 223333333211 13344443 7888887776542
Q ss_pred cCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEc--------------------CCHHHHHHHHHHhhcccCeE
Q 015764 130 DGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAIS--------------------KTPSEAQIFLEALEQGLGGI 186 (401)
Q Consensus 130 ~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v--------------------~~~~eA~~al~~LE~G~DGV 186 (401)
.++.+++... +|.+ +++++.++... +++..+ .+.+....+....+.|+|.+
T Consensus 93 --G~~~v~ig~~~~~~p~~--~~~i~~~~~~~--~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i 166 (243)
T cd04731 93 --GADKVSINSAAVENPEL--IREIAKRFGSQ--CVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEI 166 (243)
T ss_pred --CCceEEECchhhhChHH--HHHHHHHcCCC--CEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEE
Confidence 4777777543 3332 45566665322 233222 13344566677788999999
Q ss_pred EEecCC
Q 015764 187 VLKVED 192 (401)
Q Consensus 187 vl~~~d 192 (401)
+++.-+
T Consensus 167 ~v~~i~ 172 (243)
T cd04731 167 LLTSMD 172 (243)
T ss_pred EEeccC
Confidence 996543
No 137
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=51.27 E-value=18 Score=32.85 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=41.0
Q ss_pred CCCCeeeec-----CCceeEEEecCCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 269 ASRPFRVNA-----GPVHAYVLVPGGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 269 a~RPFRVNA-----GaVHaYv~~pggkT~YLS-EL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
..|||-+-. |-+.=+|...|+-|+||. .|+.||+|.+-...|+... .-..+|+++|=+
T Consensus 40 ~~r~ySi~s~~~~~~~l~l~vk~~G~~t~~l~~~l~~G~~v~i~gP~G~~~~------~~~~~~~vlia~ 103 (216)
T cd06198 40 EPHPFTISSAPDPDGRLRFTIKALGDYTRRLAERLKPGTRVTVEGPYGRFTF------DDRRARQIWIAG 103 (216)
T ss_pred CCCCcEEecCCCCCCeEEEEEEeCChHHHHHHHhCCCCCEEEEECCCCCCcc------cccCceEEEEcc
Confidence 346666632 445556666788999999 8999999999998887522 112578887754
No 138
>PRK15452 putative protease; Provisional
Probab=51.08 E-value=1.3e+02 Score=31.92 Aligned_cols=136 Identities=10% Similarity=0.091 Sum_probs=72.0
Q ss_pred EEEEEeCchhHhHHHHHhCCcEEEEcCcc---hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhc
Q 015764 52 RVWIWTESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQ 127 (401)
Q Consensus 52 ~vWiw~~~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~ 127 (401)
++-....+.+-+.+|++.|+|+|.+.-+. ...+..+.. .-+ .+.=+.....|+++.+.+... ..++++.+.
T Consensus 5 eLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl----~eav~~ah~~g~kvyvt~n~i~~e~el~~~~ 79 (443)
T PRK15452 5 ELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNH-ENL----ALGINEAHALGKKFYVVVNIAPHNAKLKTFI 79 (443)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCH-HHH----HHHHHHHHHcCCEEEEEecCcCCHHHHHHHH
Confidence 45567788999999999999999995421 000000000 000 000022345566654433333 233444433
Q ss_pred ccc-----CCCCeEEEeCCCCeeeehhhhhhcccCCCceEE----EEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHH
Q 015764 128 PAD-----GQAENIVIDLPDWQVIPAENIVASFQGSGKTVF----AISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVL 197 (401)
Q Consensus 128 ~~~-----~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~----a~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~ev~ 197 (401)
... ...|-+|+ .||-+|-+ +.+. ..+..|. +.+.|...++.+ .+.|+++|+|..+ +.+||+
T Consensus 80 ~~l~~l~~~gvDgvIV--~d~G~l~~---~ke~-~p~l~ih~stqlni~N~~a~~f~---~~lG~~rvvLSrELsl~EI~ 150 (443)
T PRK15452 80 RDLEPVIAMKPDALIM--SDPGLIMM---VREH-FPEMPIHLSVQANAVNWATVKFW---QQMGLTRVILSRELSLEEIE 150 (443)
T ss_pred HHHHHHHhCCCCEEEE--cCHHHHHH---HHHh-CCCCeEEEEecccCCCHHHHHHH---HHCCCcEEEECCcCCHHHHH
Confidence 322 13676776 35655522 2211 1122332 335666666655 4579999999998 467777
Q ss_pred HHHH
Q 015764 198 ALKE 201 (401)
Q Consensus 198 ~l~~ 201 (401)
++++
T Consensus 151 ~i~~ 154 (443)
T PRK15452 151 EIRQ 154 (443)
T ss_pred HHHh
Confidence 6653
No 139
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.42 E-value=34 Score=35.42 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCCCeEEEeCC-----------CCeeeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 131 GQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 131 ~~~~~vvv~~~-----------DW~iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
..++.++++++ +|.. +-.++. ..+..|++ .+.+.++|+.++ +.|+|+|++-
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~--i~~~ik---~~~ipVIaG~V~t~e~A~~l~---~aGAD~V~VG 215 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLN--LKEFIY---ELDVPVIVGGCVTYTTALHLM---RTGAAGVLVG 215 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHH--HHHHHH---HCCCCEEEeCCCCHHHHHHHH---HcCCCEEEEC
Confidence 35899999764 4533 334444 34567877 777777776655 5899999875
No 140
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=50.39 E-value=1.4e+02 Score=27.85 Aligned_cols=131 Identities=17% Similarity=0.280 Sum_probs=63.2
Q ss_pred EEEeCchhHhHHHHHhCCcEEEEcCcch------hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh--hhh
Q 015764 54 WIWTESKQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE--LQQ 125 (401)
Q Consensus 54 Wiw~~~K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~--~e~ 125 (401)
|+=..+.+.+..|..+|+|.++++-||. +.++. .+... +..-......+. ..++.|.+.+. .+.
T Consensus 5 ~vp~~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~--~~~~~----~~~~~~~~~~~~--~~~VRvn~~~~~~~~~ 76 (221)
T PF03328_consen 5 FVPANSPKMLEKAAASGADFVILDLEDGVPPDEKDEARE--DLAEA----LRSIRAARAAGS--EIIVRVNSLDSPHIER 76 (221)
T ss_dssp EEESTSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHH--HHHHH----HHHHHHHTTSSS--EEEEE-SSTTCHHHHH
T ss_pred EEeCCCHHHHHHHHhcCCCEEEEeCcccCCcccchhhHH--HHHHH----HHhhcccccccc--cceecCCCCCcchhhh
Confidence 4444789999999999999999997762 12221 11000 000001111222 34555665432 111
Q ss_pred -hccccCCCCeEEEeCCCCeeeehhhhhhccc---------CCCceEEEEcCCHHHHHHHHHHhhc-ccCeEEEecCCH
Q 015764 126 -LQPADGQAENIVIDLPDWQVIPAENIVASFQ---------GSGKTVFAISKTPSEAQIFLEALEQ-GLGGIVLKVEDV 193 (401)
Q Consensus 126 -~~~~~~~~~~vvv~~~DW~iIPlENliA~~q---------~~~~~l~a~v~~~~eA~~al~~LE~-G~DGVvl~~~d~ 193 (401)
+.......+.|++-.-. +.=-++.+++.+. +.++.+++.+.|++--.-+-+++.. |+||+.+-+.|.
T Consensus 77 Dl~~l~~g~~gI~lP~ve-s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dl 154 (221)
T PF03328_consen 77 DLEALDAGADGIVLPKVE-SAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADL 154 (221)
T ss_dssp HHHHHHTTSSEEEETT---SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHH
T ss_pred hhhhcccCCCeeeccccC-cHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHH
Confidence 11222345555551110 0011222333322 2245677777777666666666654 777777776654
No 141
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=50.36 E-value=21 Score=33.25 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=26.1
Q ss_pred ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 015764 290 KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (401)
Q Consensus 290 kT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvK 321 (401)
.-++|.+|+.||+|.+.+.+|+.++=-|=+++
T Consensus 102 ~F~~L~~L~~GD~I~v~~~~g~~~~Y~V~~~~ 133 (174)
T TIGR03784 102 HFAFLQELRPGDVIRLQTPDGQWQSYQVTATR 133 (174)
T ss_pred cCCChhhCCCCCEEEEEECCCeEEEEEEeEEE
Confidence 36789999999999999999988755555554
No 142
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=50.01 E-value=1.4e+02 Score=29.31 Aligned_cols=94 Identities=12% Similarity=0.124 Sum_probs=53.1
Q ss_pred ceeeeeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCee-eec----CC
Q 015764 211 NLLSLMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFR-VNA----GP 279 (401)
Q Consensus 211 ~~l~L~~atVt~V~~vGmGD-RVCVDtc-----sll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFR-VNA----Ga 279 (401)
..-....++|++++++.-.= ..++..- --+.||+=+.+. +..+....++.-.|||. +++ |-
T Consensus 29 ~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~--------~~~~~~~~~~~~~R~YS~~s~~~~~~~ 100 (300)
T PTZ00319 29 DPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFR--------CDCTTPGKPETVQHSYTPISSDDEKGY 100 (300)
T ss_pred CcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEE--------EEeCCCCccceEEeeeccCCCcccCCE
Confidence 34455678999999886432 3455321 124455533322 22211111223345554 333 22
Q ss_pred ceeEEEe---------c--CCceeeeeeccCCCeEEEEcCCCCe
Q 015764 280 VHAYVLV---------P--GGKTCYLSELKSGKEVIVVDQKGRQ 312 (401)
Q Consensus 280 VHaYv~~---------p--ggkT~YLSEL~sG~eVLvVd~~G~t 312 (401)
..=+|.. | |.-|+||..|+.||+|.+-...|+.
T Consensus 101 i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f 144 (300)
T PTZ00319 101 VDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKF 144 (300)
T ss_pred EEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceee
Confidence 3334433 2 7788999999999999998888865
No 143
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=49.87 E-value=79 Score=33.68 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=63.6
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 139 (401)
+.+...-.+.|.+-++++++ .+.++++.+. |- -+.+.+.++++-++++-. .+++.+++.
T Consensus 430 ~~la~~L~~~g~~vvvId~d-~~~~~~~~~~-----------------g~-~~i~GD~~~~~~L~~a~i--~~a~~viv~ 488 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETS-RTRVDELRER-----------------GI-RAVLGNAANEEIMQLAHL--DCARWLLLT 488 (558)
T ss_pred HHHHHHHHHCCCCEEEEECC-HHHHHHHHHC-----------------CC-eEEEcCCCCHHHHHhcCc--cccCEEEEE
Confidence 45555555678888888765 4555555433 11 134445667666655443 367888876
Q ss_pred CCCCeeeehhh--hhh--cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 140 LPDWQVIPAEN--IVA--SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 140 ~~DW~iIPlEN--liA--~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
..|. -+| ++. .....+.++++.+++.++.+.. .+.|+|-|+.+.+
T Consensus 489 ~~~~----~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l---~~~Gad~vv~p~~ 537 (558)
T PRK10669 489 IPNG----YEAGEIVASAREKRPDIEIIARAHYDDEVAYI---TERGANQVVMGER 537 (558)
T ss_pred cCCh----HHHHHHHHHHHHHCCCCeEEEEECCHHHHHHH---HHcCCCEEEChHH
Confidence 5553 233 221 1123456899999999888876 4689998884443
No 144
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=49.51 E-value=48 Score=25.65 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=36.6
Q ss_pred eEEEecCCceeeeeeccC---------CCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceE
Q 015764 282 AYVLVPGGKTCYLSELKS---------GKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETV 352 (401)
Q Consensus 282 aYv~~pggkT~YLSEL~s---------G~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETI 352 (401)
+.|.+++|++..+.||-. |.+|+.+|.++. +..+|.....-+. .+..+.+-+.|-.+|
T Consensus 5 t~V~~~~G~~~~i~el~~~~~~~~~~~~~~v~s~~~~~~----------~~~~~~~~~~~~~---~~~~~~i~t~~g~~i 71 (81)
T TIGR01445 5 TKVLTEDGETVKIGELVEKEKDEKEPIKVKVLSLDGGKI----------VKARPVVVWKRRA---EGKLIRIKTENGREI 71 (81)
T ss_pred CEEEeCCCCEEEHHHHHHHHhccCCccceEEEeecCCcE----------EEeeceEEEEecC---CCcEEEEEeCCCCEE
Confidence 566778888889998877 678888875431 2234443333333 345556666665566
Q ss_pred EE
Q 015764 353 AL 354 (401)
Q Consensus 353 RL 354 (401)
++
T Consensus 72 ~~ 73 (81)
T TIGR01445 72 KA 73 (81)
T ss_pred EE
Confidence 64
No 145
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=49.46 E-value=79 Score=30.34 Aligned_cols=113 Identities=8% Similarity=0.055 Sum_probs=60.7
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv 138 (401)
.+.+..+.++|+++++++.-+.+...++.+. .++.|...+.++.-. +.+.++.+... ..+++.+
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~-------------~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~ 158 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREA-------------AKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYY 158 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEE
Confidence 6789999999999999976444332222211 223344444433333 34555555542 2344443
Q ss_pred eC----C-CCe--eeehhhhhhcccCCC-ceE--EEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 139 DL----P-DWQ--VIPAENIVASFQGSG-KTV--FAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 139 ~~----~-DW~--iIPlENliA~~q~~~-~~l--~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
-. . ..+ .-+..+.|..+.+.. ..| =..+++.++++. +.+. +||+++-+.
T Consensus 159 ~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~---~~~~-ADgvVvGSa 217 (242)
T cd04724 159 VSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAE---VAKY-ADGVIVGSA 217 (242)
T ss_pred EeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHH---HHcc-CCEEEECHH
Confidence 21 1 222 123456666665432 222 234666666665 5677 999999753
No 146
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=49.46 E-value=26 Score=33.17 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=38.9
Q ss_pred CCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 278 GPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 278 GaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|-++=+|..-|.-|+||..++.||+|.+-...|+.-.. -..+.+|+++|=+
T Consensus 56 ~~l~~~Ik~~G~~S~~L~~l~~G~~v~i~gP~G~~f~~----~~~~~~~iv~IA~ 106 (253)
T cd06221 56 GPLELTIRRVGRVTEALHELKPGDTVGLRGPFGNGFPV----EEMKGKDLLLVAG 106 (253)
T ss_pred CeEEEEEEeCChhhHHHHcCCCCCEEEEECCcCCCccc----ccccCCeEEEEcc
Confidence 55677788788899999999999999999998874321 1114688888855
No 147
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=49.02 E-value=1.3e+02 Score=29.36 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=66.1
Q ss_pred EEEEeCchhHhHHHHHhCCcEEEEcC----cc--------hhhHhhccce-eeeeeeeecCCccccCCCCeeEEEEEec-
Q 015764 53 VWIWTESKQVMTAAVERGWNTFVFLS----EN--------QQLAIDWSTI-ALLDPLFIKEGEVYDSGDRRVGSIIEVS- 118 (401)
Q Consensus 53 vWiw~~~K~~vt~AlEsG~~~~v~~~----~~--------~~~~~~~~~i-~~i~~l~~~~g~~~~~~gk~v~~~~~v~- 118 (401)
+++.-.+.+.+ --|+|+++|++ .| .+-+..++++ .+.. .+..|.++=..|..++.+....
T Consensus 57 vilfp~~~~~i----~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e--~i~~gYiv~~~~~~v~~v~~a~~ 130 (219)
T cd02812 57 VILFPSNPEAV----SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLE--LIPEGYLVLNPDSTVARVTGAKT 130 (219)
T ss_pred EEEeCCCcccc----CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhcccccccc--ccceEEEEECCCCceeeeeccCc
Confidence 55555555555 36799999985 22 2233333331 1111 1123343333344565544443
Q ss_pred --Chhhhhh---hccccCCCCeEEEeCCCCeeeehhhhhhcccCC-Cce--EEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 119 --TPQELQQ---LQPADGQAENIVIDLPDWQVIPAENIVASFQGS-GKT--VFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 119 --~~e~~e~---~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~-~~~--l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
++|+... ++..++ ...+-++..+=. +|.|.+-+-.+.. +.. +=...+|.++|+.+ ++.|+|+|++-+
T Consensus 131 ~~~~e~~~ayA~aae~~g-~~ivyLe~SG~~-~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l---~~aGAD~VVVGs 205 (219)
T cd02812 131 DLKPEDAAAYALAAEYLG-MPIVYLEYSGAY-GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEM---AEAGADTIVVGN 205 (219)
T ss_pred CCCHHHHHHHHHHHHHcC-CeEEEeCCCCCc-CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHH---HHcCCCEEEECc
Confidence 3444333 223334 666667643322 5655443222222 233 34467888888875 578999999987
Q ss_pred C
Q 015764 191 E 191 (401)
Q Consensus 191 ~ 191 (401)
-
T Consensus 206 a 206 (219)
T cd02812 206 I 206 (219)
T ss_pred h
Confidence 3
No 148
>PRK09206 pyruvate kinase; Provisional
Probab=48.31 E-value=55 Score=35.17 Aligned_cols=205 Identities=12% Similarity=0.121 Sum_probs=120.4
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
.|++.+.-|++-|+|.+-..- .+++.++++.++ +... ++.+.++.+|.+++-++.+..-+...|-
T Consensus 173 kD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeIl~~~Dg 239 (470)
T PRK09206 173 KDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREH-------------LKAHGGENIQIISKIENQEGLNNFDEILEASDG 239 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHcCCCCceEEEEECCHHHHHhHHHHHHhCCE
Confidence 478889999999999654432 123334433332 2222 2456788899999998887776666888
Q ss_pred EEEeCCC-Ceeeehhhhhhc-------ccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPD-WQVIPAENIVAS-------FQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~D-W~iIPlENliA~-------~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
+.|-..| .-=+|.|.+.+. +...+.-+|. ...+-.|+--.+.+..-|+|+|+|.-+.
T Consensus 240 ImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~ 319 (470)
T PRK09206 240 IMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGK 319 (470)
T ss_pred EEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCC
Confidence 8885444 344677766542 2222222332 2345578888899999999999996653
Q ss_pred -H-HHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCC
Q 015764 193 -V-KAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIAS 270 (401)
Q Consensus 193 -~-~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~ 270 (401)
| +.|+-+.+++.+.. ......+.. .- ...-. +.+.+ +.+|=+ ++
T Consensus 320 yPveaV~~m~~I~~~~E-~~~~~~~~~-------------~~---~~~~~---------~~~~~--ia~sa~----~~-- 365 (470)
T PRK09206 320 YPLEAVSIMATICERTD-RVMNSRLES-------------NN---DNRKL---------RITEA--VCRGAV----ET-- 365 (470)
T ss_pred CHHHHHHHHHHHHHHHH-hhcchhhhh-------------hc---cccCC---------ChHHH--HHHHHH----HH--
Confidence 3 56666666664321 110000000 00 00000 00000 111100 00
Q ss_pred CCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCC
Q 015764 271 RPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGR 311 (401)
Q Consensus 271 RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~ 311 (401)
-..+||.+.=+|+.. |..++.+|-.++.-.|+++-.+=+
T Consensus 366 -A~~l~a~aIv~~T~s-G~tA~~is~~RP~~pIia~t~~~~ 404 (470)
T PRK09206 366 -AEKLDAPLIVVATQG-GKSARSVRKYFPDATILALTTNEK 404 (470)
T ss_pred -HhcCCCCEEEEECCC-cHHHHHHHhhCCCCCEEEECCCHH
Confidence 124799999999885 888899999999999999887543
No 149
>PRK08114 cystathionine beta-lyase; Provisional
Probab=48.10 E-value=12 Score=38.66 Aligned_cols=125 Identities=11% Similarity=0.169 Sum_probs=74.8
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeee---eee-cCC---------ccccCCCCeeEEEEEecChhhhhhh
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEG---------EVYDSGDRRVGSIIEVSTPQELQQL 126 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~---l~~-~~g---------~~~~~~gk~v~~~~~v~~~e~~e~~ 126 (401)
=+-.-++||.|-.+++|++.......-+..+ .++ +++ ++. ..++..|..+ .++...+.++++.+
T Consensus 67 le~~la~LEg~~~a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v-~~vd~~d~~~l~~~ 143 (395)
T PRK08114 67 LQEAMCELEGGAGCALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTT-TWFDPLIGADIAKL 143 (395)
T ss_pred HHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEE-EEECCCCHHHHHHh
Confidence 3556678999999999998654333322222 122 222 222 1234456544 33344455554443
Q ss_pred ccccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 127 QPADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 127 ~~~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
.. .+...|.++.. ..++.|++.|.+.+...+..++..|.+.--+-..+..++.|+|=|+-.
T Consensus 144 l~--~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~pl~~GaDivv~S 207 (395)
T PRK08114 144 IQ--PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKALDFGIDISIQA 207 (395)
T ss_pred cC--CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCHHHcCCcEEEEc
Confidence 22 23556667654 467899999998876543236667777766677799999999966643
No 150
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=47.77 E-value=1.5e+02 Score=27.21 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=56.4
Q ss_pred EEEEEEEEEcCCcc-eEEEeecC----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeec-----CCceeEEEe
Q 015764 217 KATVTRVDVAGMGD-RVCVDLCS----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNA-----GPVHAYVLV 286 (401)
Q Consensus 217 ~atVt~V~~vGmGD-RVCVDtcs----ll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNA-----GaVHaYv~~ 286 (401)
+++|++++.+.-+- ++++.... -..||+=+.+- ... + -..|||-+-. |-+.=++..
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~---------~~~----~-~~~r~ySi~s~~~~~~~l~l~vk~ 67 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDIT---------VPG----T-EETRSFSMANTPADPGRLEFIIKK 67 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEE---------cCC----C-CcccccccCCCCCCCCEEEEEEEE
Confidence 57888888875543 23444322 24455544432 111 1 1356666532 334444544
Q ss_pred -cCCc-eeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 287 -PGGK-TCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 287 -pggk-T~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|+|. |.||.+ |+.||.|.+-...|+...- +.+.+|+++|=+
T Consensus 68 ~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~-----~~~~~~~l~iag 111 (232)
T cd06212 68 YPGGLFSSFLDDGLAVGDPVTVTGPYGTCTLR-----ESRDRPIVLIGG 111 (232)
T ss_pred CCCCchhhHHhhcCCCCCEEEEEcCcccceec-----CCCCCcEEEEec
Confidence 5554 899986 9999999999888866421 124578877743
No 151
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=47.37 E-value=19 Score=34.75 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=30.0
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|--|.||++|+.||+|.+-...|+.-... .-..+|+++|=+
T Consensus 103 G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~----~~~~~~~vlIag 143 (286)
T cd06208 103 GVCSNYLCDLKPGDDVQITGPVGKTMLLP----EDPNATLIMIAT 143 (286)
T ss_pred cchHHHHhhCCCCCEEEEEeecCCcccCC----CCCCCCEEEEec
Confidence 66799999999999999988888642211 012578888854
No 152
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=47.30 E-value=67 Score=34.30 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=47.4
Q ss_pred EecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC--eEEEecCC-
Q 015764 116 EVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG--GIVLKVED- 192 (401)
Q Consensus 116 ~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D--GVvl~~~d- 192 (401)
=|.+++|+.++.. + ++-++|-..-.+-=-+...+.+|.... -=|+..++++||+.+.+ .|+| |+++.+.+
T Consensus 218 GI~t~~d~~~~~~--~-~davLiG~~lm~~~d~~~~~~~L~~~~-vKICGit~~eda~~a~~---~GaD~lGfIf~~~Sp 290 (454)
T PRK09427 218 GIYTHAQVRELSP--F-ANGFLIGSSLMAEDDLELAVRKLILGE-NKVCGLTRPQDAKAAYD---AGAVYGGLIFVEKSP 290 (454)
T ss_pred CCCCHHHHHHHHh--c-CCEEEECHHHcCCCCHHHHHHHHhccc-cccCCCCCHHHHHHHHh---CCCCEEeeEeCCCCC
Confidence 3889999888743 3 788887333333222233333332222 23688899999988765 6888 77775554
Q ss_pred ----HHHHHHHHH
Q 015764 193 ----VKAVLALKE 201 (401)
Q Consensus 193 ----~~ev~~l~~ 201 (401)
+++++++.+
T Consensus 291 R~V~~~~a~~i~~ 303 (454)
T PRK09427 291 RYVSLEQAQEIIA 303 (454)
T ss_pred CCCCHHHHHHHHH
Confidence 455554544
No 153
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=47.22 E-value=1.3e+02 Score=29.71 Aligned_cols=86 Identities=10% Similarity=0.114 Sum_probs=54.3
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCC-----eeeehhhhhhcccC---CCceEEEEcCCHHH---HHHHHHHhhcccCe
Q 015764 117 VSTPQELQQLQPADGQAENIVIDLPDW-----QVIPAENIVASFQG---SGKTVFAISKTPSE---AQIFLEALEQGLGG 185 (401)
Q Consensus 117 v~~~e~~e~~~~~~~~~~~vvv~~~DW-----~iIPlENliA~~q~---~~~~l~a~v~~~~e---A~~al~~LE~G~DG 185 (401)
=..++-++.+. ...+|.|+++..|= +----+|++..++. .+..++..++..+. ..-...+|..|+||
T Consensus 11 ~~~~~~~~ka~--~~gaD~vilDLEDav~~~~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~~g 88 (288)
T TIGR01588 11 GNNPAMISDAF--IYGADSVMFDLEDAVSLAEKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGVDV 88 (288)
T ss_pred CCCHHHHHhhh--hcCCCEEEEecccCCCcchHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCCCE
Confidence 33444444332 23589999977662 21222334444322 34579999996543 45566778899999
Q ss_pred EEEe-cCCHHHHHHHHHhhc
Q 015764 186 IVLK-VEDVKAVLALKEYFD 204 (401)
Q Consensus 186 Vvl~-~~d~~ev~~l~~~~~ 204 (401)
|+|+ .++++++..+.+++.
T Consensus 89 ivlPKv~s~~~v~~~~~~l~ 108 (288)
T TIGR01588 89 VRLPKTDTAEDIHELEKLIE 108 (288)
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 9996 567889988877764
No 154
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=47.19 E-value=1.1e+02 Score=26.07 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=14.3
Q ss_pred HHHHHhCCcEEEEcCcc
Q 015764 64 TAAVERGWNTFVFLSEN 80 (401)
Q Consensus 64 t~AlEsG~~~~v~~~~~ 80 (401)
..+.+.|+|.+.+...+
T Consensus 78 ~~~~~~g~d~v~l~~~~ 94 (200)
T cd04722 78 AAARAAGADGVEIHGAV 94 (200)
T ss_pred HHHHHcCCCEEEEeccC
Confidence 48899999999988754
No 155
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=47.13 E-value=26 Score=33.55 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=26.4
Q ss_pred CCCcEEEEEe-----CchhHhHHHHHhCCcEEEEcC
Q 015764 48 SKPKRVWIWT-----ESKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 48 ~~~K~vWiw~-----~~K~~vt~AlEsG~~~~v~~~ 78 (401)
...+.||+|| .+++.+...++.|+|+++.+.
T Consensus 221 ~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~ 256 (265)
T cd08564 221 ENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPND 256 (265)
T ss_pred HcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCC
Confidence 4577899997 568999999999999999765
No 156
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=46.78 E-value=54 Score=32.36 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=35.5
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
...|-.+++|.+||+.+ ++.|+|.|.|.+=.++++++..+.+
T Consensus 178 ~~~Igvev~t~eea~~A---~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 178 ALKIEVEVESLEEAEEA---AEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35688999999997755 6899999999999999988777765
No 157
>PRK04302 triosephosphate isomerase; Provisional
Probab=46.71 E-value=1.5e+02 Score=27.88 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=52.7
Q ss_pred hHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCC
Q 015764 63 MTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP 141 (401)
Q Consensus 63 vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~ 141 (401)
+..+-+.|+++++++. +....-.++.++-. .....|-. .++.+.+.++++.+... ..+++-++..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~----------~a~~~Gl~--~I~~v~~~~~~~~~~~~--~~~~I~~~p~ 143 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVE----------RAKKLGLE--SVVCVNNPETSAAAAAL--GPDYVAVEPP 143 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHH----------HHHHCCCe--EEEEcCCHHHHHHHhcC--CCCEEEEeCc
Confidence 7777889999999875 11111111110000 00111221 22345565665544321 3455555432
Q ss_pred CCee---ee--------hhhhhhcccC--CCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 015764 142 DWQV---IP--------AENIVASFQG--SGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 142 DW~i---IP--------lENliA~~q~--~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
|-+ .+ ++.+++.+.. .+..|++. +++.++++. +++.|+|||++-+
T Consensus 144 -~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~---~~~~gadGvlVGs 203 (223)
T PRK04302 144 -ELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKA---ALELGADGVLLAS 203 (223)
T ss_pred -cccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHH---HHcCCCCEEEEeh
Confidence 311 11 3344444432 23455543 456666555 5789999998754
No 158
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=46.59 E-value=30 Score=32.53 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=26.9
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEcC
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~ 78 (401)
+..+.+|+|| .+.+.+..+++.|+|+|+.+.
T Consensus 210 ~~G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~ 241 (249)
T cd08561 210 AAGLEVHVWTVNDPAEMRRLLDLGVDGIITDR 241 (249)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEcCC
Confidence 4578899999 679999999999999999754
No 159
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=46.42 E-value=1.4e+02 Score=27.35 Aligned_cols=58 Identities=31% Similarity=0.464 Sum_probs=37.5
Q ss_pred CCCeeee-----cCCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 270 SRPFRVN-----AGPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 270 ~RPFRVN-----AGaVHaYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|||-+- .|-+.-+|.. ++| -|+||-. |+.||+|.+-...|+..... -..+|+++|=+
T Consensus 41 ~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-----~~~~~ivliag 106 (224)
T cd06189 41 KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKENGLVRIEGPLGDFFLRE-----DSDRPLILIAG 106 (224)
T ss_pred ceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccCCCEEEEecCCccEEecc-----CCCCCEEEEec
Confidence 4555553 3445556655 434 5889865 99999999999888763211 13578887743
No 160
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.26 E-value=45 Score=33.30 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=34.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
..+|..++.|.+||+.+ ++.|+|.|.|++=.+++++++.+.+
T Consensus 189 ~~~I~VEv~tleea~eA---~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 189 GKPVEVEVESLDELRQA---LAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred CCeEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHh
Confidence 35799999999997654 5889999999999999888777654
No 161
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=46.17 E-value=26 Score=32.05 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=25.6
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEc
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~ 77 (401)
+..++||+|| .+++.+..++..|+|+|+.+
T Consensus 197 ~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD 227 (229)
T cd08562 197 DAGYKLLVYTVNDPARAAELLEWGVDAIFTD 227 (229)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcC
Confidence 3567899999 56999999999999999864
No 162
>PRK06354 pyruvate kinase; Provisional
Probab=46.12 E-value=61 Score=35.80 Aligned_cols=134 Identities=16% Similarity=0.235 Sum_probs=87.5
Q ss_pred CchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccc-cCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 58 ESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVY-DSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~-~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
+|++.+.-|++.|+|.+-+.- .+++.++++.++ + ...++.+.++.+|.+++-++.+..-....|-
T Consensus 179 kD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~-------------l~~~~~~~~~iiaKIEt~eav~nldeI~~~~Dg 245 (590)
T PRK06354 179 KDREDLIFGLEQGVDWIALSFVRNPSDVLEIREL-------------IEEHNGKHIPIIAKIEKQEAIDNIDAILELCDG 245 (590)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHH-------------HHHhcCCCceEEEEECCHHHHHhHHHHHHhcCE
Confidence 578889999999999665442 224444444433 2 1124556788899999998887776666888
Q ss_pred EEEeCCC-Ceeeehhhhhh-------cccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecCC----
Q 015764 136 IVIDLPD-WQVIPAENIVA-------SFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVED---- 192 (401)
Q Consensus 136 vvv~~~D-W~iIPlENliA-------~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~d---- 192 (401)
++|-..| .-=+|.|.+-+ .+...+.-+|. ...+-.|+--.+.+..-|+|+|+|..+.
T Consensus 246 ImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~ 325 (590)
T PRK06354 246 LMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGD 325 (590)
T ss_pred EEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCC
Confidence 8885444 33466665533 32222323332 1345578888889999999999999653
Q ss_pred --HHHHHHHHHhhc
Q 015764 193 --VKAVLALKEYFD 204 (401)
Q Consensus 193 --~~ev~~l~~~~~ 204 (401)
.+.|+-+.+++.
T Consensus 326 yPveaV~~m~~I~~ 339 (590)
T PRK06354 326 YPVEAVQTMATIAV 339 (590)
T ss_pred CHHHHHHHHHHHHH
Confidence 366666677664
No 163
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=45.96 E-value=29 Score=32.77 Aligned_cols=59 Identities=27% Similarity=0.341 Sum_probs=39.6
Q ss_pred CCCeeeecC-----CceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 015764 270 SRPFRVNAG-----PVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 270 ~RPFRVNAG-----aVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
.|||=+-.- -+.=.+..-|+.|+||..|+.||+|.+-...|+.- ..-. ..+|+++|=+-
T Consensus 44 ~R~ySi~s~~~~~~~l~l~v~~~G~~s~~l~~l~~Gd~v~i~gP~G~~~--~~~~---~~~~~vlIagG 107 (246)
T cd06218 44 RRPISIHDVDPEEGTITLLYKVVGKGTRLLSELKAGDELDVLGPLGNGF--DLPD---DDGKVLLVGGG 107 (246)
T ss_pred CCceEeeeccCCCCEEEEEEEEECcchHHHhcCCCCCEEEEEecCCCCc--CCCC---CCCcEEEEecc
Confidence 466655332 23334555577899999999999999998888631 1212 46788887653
No 164
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=45.40 E-value=26 Score=33.13 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=26.3
Q ss_pred CcEEEEEe-CchhHhHHHHHhCCcEEEEcCc
Q 015764 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 50 ~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
.+.|++|| .+++.|..+++.|+|+++.+..
T Consensus 201 g~~v~~WTVn~~~~~~~l~~~GVdgIiTD~P 231 (235)
T cd08565 201 GLRLGVWTVNDDSLIRYWLACGVRQLTTDRP 231 (235)
T ss_pred CCEEEEEccCCHHHHHHHHHcCCCEEEeCCc
Confidence 67899999 5799999999999999997653
No 165
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=45.39 E-value=1.6e+02 Score=26.38 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=55.7
Q ss_pred hhHhHHHHHhCCcEEEEcCcc-hhhHhhccceeeeeeeeecCCccccCCCCeeEE-EEEecChhhhhhhccccCCCCeEE
Q 015764 60 KQVMTAAVERGWNTFVFLSEN-QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGS-IIEVSTPQELQQLQPADGQAENIV 137 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~-~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~-~~~v~~~e~~e~~~~~~~~~~~vv 137 (401)
...+..+.+.|+|.++++.+. .+...++-+. .++.|.+.+. .....++++..+ ......+++.
T Consensus 67 ~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~-------------~~~~g~~~~v~~~~~~t~~e~~~--~~~~~~d~v~ 131 (202)
T cd04726 67 ALEAEMAFKAGADIVTVLGAAPLSTIKKAVKA-------------AKKYGKEVQVDLIGVEDPEKRAK--LLKLGVDIVI 131 (202)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH-------------HHHcCCeEEEEEeCCCCHHHHHH--HHHCCCCEEE
Confidence 346788999999999987542 1111111111 1122444443 245556666554 2223678887
Q ss_pred EeC----CCCeeeehhhhhhcccC-CCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 138 IDL----PDWQVIPAENIVASFQG-SGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 138 v~~----~DW~iIPlENliA~~q~-~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
+.. .....-.-...+.++.. .+..+.+ .++ .+ .+-++++.|+||+++-+
T Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~---~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 132 LHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT-PD---TLPEFKKAGADIVIVGR 187 (202)
T ss_pred EcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC-HH---HHHHHHhcCCCEEEEee
Confidence 731 11111111222232221 2222332 332 33 45677889999998765
No 166
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=45.09 E-value=1.5e+02 Score=27.39 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=62.0
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec-cceeEEEEE----ecCCCCeE----EEEEeEecceEEE
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES-RPLILVEAK----TNSGDQTL----YGIILQNAETVAL 354 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~-RPLlLVeAe----~~~~~G~~----~sviLQnAETIRL 354 (401)
+.+||++-....|..+|.-+.+- +|.-+...+|.++|.. +..+-+.-- ..-.-|.. +.-+.++-+.|.+
T Consensus 7 ~V~PGe~l~~~~e~~~G~Gty~~--~~~i~as~~G~~~id~~~~~Isv~P~~~~~~~~~~GdiV~GkV~~i~~~g~~V~I 84 (189)
T PRK09521 7 LVLPGDYLAVIEEYLPGEGTYED--NGEVYASVVGKVFIDDINRKISVIPFKKTPPLLKKGDIVYGRVVDVKEQRALVRI 84 (189)
T ss_pred EECCCCccccccceEcCCCEEee--CCEEEEEeeEEEEEcCCCCEEEEecCcCCCCCCCCCCEEEEEEEEEcCCeEEEEE
Confidence 45799988888899999998774 6889999999999842 323322211 00001322 2334566666776
Q ss_pred ecCCCC----CCCCCceeeee------------ecCCCCEEEEEecCCCcccceee
Q 015764 355 VSPCKG----TGEQEKAIPVT------------SLKVGDEVLLRVQGAARHTGIEI 394 (401)
Q Consensus 355 v~p~~g----~~~~g~~vsVt------------~LK~GD~VL~~~~~~gRHfG~~I 394 (401)
..-++- ..+--..+.++ .+++||.|.+++..-.+.+-..+
T Consensus 85 ~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~~~i~LS~ 140 (189)
T PRK09521 85 VSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYTDPLQLST 140 (189)
T ss_pred EEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecCCcEEEEE
Confidence 431100 00000122222 27999999999765444444333
No 167
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=45.09 E-value=25 Score=33.76 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCcEEEEEe-CchhHhHHHHHhCCcEEEEcCc
Q 015764 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 49 ~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
....|++|| .+.+.|...++.|+|+|+.+..
T Consensus 230 ~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 230 RGIQVYLWVLNDEEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred cCCcEEEEEECCHHHHHHHHhcCCCEEEeCCc
Confidence 566799999 5699999999999999998653
No 168
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=44.98 E-value=32 Score=31.49 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=35.9
Q ss_pred CCceeEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 015764 278 GPVHAYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 278 GaVHaYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
|-+.=+|.. |+| -|+||.. |+.||.|.+....|+.-.. . ..+|+++|=+-
T Consensus 59 ~~i~~~i~~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~---~---~~~~~vlia~G 111 (228)
T cd06209 59 PRLEFLIRLLPGGAMSSYLRDRAQPGDRLTLTGPLGSFYLR---E---VKRPLLMLAGG 111 (228)
T ss_pred CeEEEEEEEcCCCcchhhHHhccCCCCEEEEECCcccceec---C---CCCeEEEEEcc
Confidence 555566665 655 4899998 9999999999999976321 1 24788887553
No 169
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.72 E-value=42 Score=35.43 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=45.9
Q ss_pred Chhhhhhhcccc-CCCCeEEEeCCCCeeeehhhhhhcccCC--CceE-EEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 119 TPQELQQLQPAD-GQAENIVIDLPDWQVIPAENIVASFQGS--GKTV-FAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 119 ~~e~~e~~~~~~-~~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l-~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
++++++++.... ..+|.++|+..+-.-..+.++|..+... +..| .+.+.+.++|+.+.. .|+|+|.+-
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~---aGaD~I~vG 222 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVG 222 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHH---cCCCEEEEC
Confidence 355555554433 3599999998876556677777766543 2334 448888888887654 699999764
No 170
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=44.66 E-value=52 Score=35.44 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=71.7
Q ss_pred EEEEeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 015764 53 VWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (401)
Q Consensus 53 vWiw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 132 (401)
|++-.+.++.+.+.+|.|+|-++++..|-+....|..+.+|+..+ . +.. .+...|.+.++-..+.. ..
T Consensus 243 vg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~-p--------~~~-vi~g~v~t~e~a~~a~~--aG 310 (505)
T PLN02274 243 IGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTY-P--------ELD-VIGGNVVTMYQAQNLIQ--AG 310 (505)
T ss_pred EcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhC-C--------CCc-EEEecCCCHHHHHHHHH--cC
Confidence 333346799999999999999999876544444444444433211 0 111 11235888888555554 36
Q ss_pred CCeEEEe--------CCC------CeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 133 AENIVID--------LPD------WQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 133 ~~~vvv~--------~~D------W~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
+|.|++. ... .+.=++.++-...+..+..|||. +.+..++. .+|..|+|+|++-+-
T Consensus 311 aD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~---kAla~GA~~V~vGs~ 382 (505)
T PLN02274 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIV---KALTLGASTVMMGSF 382 (505)
T ss_pred cCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEchh
Confidence 7887773 110 12223333333333335567764 56666655 556789999998653
No 171
>COG4697 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.57 E-value=32 Score=35.25 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=45.8
Q ss_pred EEEEEEEcCCcceE-----EEeecC-----CCCCCceEEEeccCc--------------eEEEEeeccccCCCC------
Q 015764 219 TVTRVDVAGMGDRV-----CVDLCS-----LMRPGEGLLVGSFAR--------------GLFLVHSECLESNYI------ 268 (401)
Q Consensus 219 tVt~V~~vGmGDRV-----CVDtcs-----ll~~GEGmLVGS~s~--------------glFLVhsEt~es~Yv------ 268 (401)
.|..+.-.|++.|. ||||-| +--.|||++.|-+-. ++|.-.+|.-+-|.-
T Consensus 177 ~i~d~a~Fg~~~~~~p~v~~id~esg~~~~~~~DGe~l~~~~~gA~~~~~~r~~a~~~Ggf~v~~pe~g~ep~f~r~~df 256 (319)
T COG4697 177 DISDKATFGLLLRIDPGVPQIDTESGAIFGMALDGEGLYIGASGANHTGVYRYRAGDGGGFAVPVPELGREPRFPRRIDF 256 (319)
T ss_pred eeeeeeeeeeecccCCCceeEeecccccccccccCCceeeccccceeeeEEEEEEecCceEEecCcccCCCccceEEEEe
Confidence 35555566777664 889876 445789999886532 344446676555532
Q ss_pred --CCCCeeeecCCceeEEEecCC
Q 015764 269 --ASRPFRVNAGPVHAYVLVPGG 289 (401)
Q Consensus 269 --a~RPFRVNAGaVHaYv~~pgg 289 (401)
+--|||+||+..--=++.|-+
T Consensus 257 ~~~YsPtr~nal~fGGgvli~Fn 279 (319)
T COG4697 257 HGSYSPTRGNALWFGGGVLIGFN 279 (319)
T ss_pred cCccCCcccccceecceeeeccc
Confidence 234999999988766666443
No 172
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.34 E-value=97 Score=30.49 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=62.6
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccccCCCCeEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPADGQAENIV 137 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~~~~~~~vv 137 (401)
-.+.+..|-|+|+|++++++=-.+..+++... .++.|-....++.-++ .+.++.++......=|++
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~-------------~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~v 172 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPPEEAEELRAA-------------AKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYV 172 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHH-------------HHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEE
Confidence 46789999999999999985222333322211 1122322223333333 455555555442222221
Q ss_pred --EeCCCCe-e--eehhhhhhcccCC-CceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 138 --IDLPDWQ-V--IPAENIVASFQGS-GKTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 138 --v~~~DW~-i--IPlENliA~~q~~-~~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
.-.++++ - -++++.+..+.+. +..++ ..+++.++++.++ + ++|||++-+.
T Consensus 173 s~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~---~-~ADGviVGSa 230 (258)
T PRK13111 173 SRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIA---A-VADGVIVGSA 230 (258)
T ss_pred eCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH---H-hCCEEEEcHH
Confidence 1113442 2 2366666666543 33333 4567888888766 3 3999999874
No 173
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=44.31 E-value=1.5e+02 Score=27.77 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=57.0
Q ss_pred eeeeeeecCCccccC-CCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCe---eeehhhhhhccc-CCCceEEE--
Q 015764 92 LLDPLFIKEGEVYDS-GDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQ---VIPAENIVASFQ-GSGKTVFA-- 164 (401)
Q Consensus 92 ~i~~l~~~~g~~~~~-~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~---iIPlENliA~~q-~~~~~l~a-- 164 (401)
.|..|.+.+|..+.. +|+.--..+...++.++-+.... ...+++.+...|=. ....-++|.++- ..+..++.
T Consensus 5 iip~idl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~-~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~G 83 (241)
T PRK13585 5 VIPAVDMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVD-AGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGG 83 (241)
T ss_pred EEEEEEeECCeEEEeeccccCCceEECCCHHHHHHHHHH-cCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEEcC
Confidence 345577788876642 23211112234566665555444 34677777655421 111122333221 12222333
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCH---HHHHHHHH
Q 015764 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDV---KAVLALKE 201 (401)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~---~ev~~l~~ 201 (401)
.+++.++++.++. .|+|+|++.+... +.+.++.+
T Consensus 84 Gi~~~~~~~~~~~---~Ga~~v~iGs~~~~~~~~~~~i~~ 120 (241)
T PRK13585 84 GIRSAEDAASLLD---LGVDRVILGTAAVENPEIVRELSE 120 (241)
T ss_pred CcCCHHHHHHHHH---cCCCEEEEChHHhhChHHHHHHHH
Confidence 5689999988875 7999999999654 44444433
No 174
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.03 E-value=55 Score=32.53 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=83.9
Q ss_pred EEEEeC---chhHhHHHHHhCCcEEEEcCcc------hhhHhhccceeeee--eeeecCCccccCCCCeeEEEEEecChh
Q 015764 53 VWIWTE---SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQ 121 (401)
Q Consensus 53 vWiw~~---~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~e 121 (401)
|.+--+ +.+.+..|++.|++.++++.-+ .++.+++-.+..-. .+-.+=|.+-..++..++.-...+++|
T Consensus 77 v~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~e 156 (282)
T TIGR01859 77 VALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPD 156 (282)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHH
Confidence 666543 7899999999999999998543 22333333222110 111111111011111111012367899
Q ss_pred hhhhhccccCCCCeEEEe-------CCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCH-
Q 015764 122 ELQQLQPADGQAENIVID-------LPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDV- 193 (401)
Q Consensus 122 ~~e~~~~~~~~~~~vvv~-------~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~- 193 (401)
+..++.... .+|++.+. +.....+.+|.|-.--+..+.-|++.=.|--....+-.+.+.|+++|=+.|+=-
T Consensus 157 ea~~f~~~t-gvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 157 EAEQFVKET-GVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred HHHHHHHHH-CcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 877777544 57888863 233445666665332222244566666444444557778899999999999852
Q ss_pred HHHHHHHHhh
Q 015764 194 KAVLALKEYF 203 (401)
Q Consensus 194 ~ev~~l~~~~ 203 (401)
.-...+++++
T Consensus 236 a~~~~~~~~~ 245 (282)
T TIGR01859 236 AFTAAIRKVL 245 (282)
T ss_pred HHHHHHHHHH
Confidence 4444555555
No 175
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=43.97 E-value=25 Score=34.65 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=37.7
Q ss_pred CCCeeeecCC-----ceeEEE-ecCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 270 SRPFRVNAGP-----VHAYVL-VPGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 270 ~RPFRVNAGa-----VHaYv~-~pggk-T~YLS-EL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|||-+-..| +-=+|. .|+|+ |+||. +|+.||+|.+-...|+-..- .-..+|+++|=+
T Consensus 54 ~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~-----~~~~~~~vliAg 119 (332)
T PRK10684 54 LRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMGEFTCD-----DKAEDKYLLLAA 119 (332)
T ss_pred eeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhcCCCCCEEEEeCCccccccC-----CCCCCcEEEEec
Confidence 3677664333 222333 37666 89995 89999999998888875311 123578888754
No 176
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.91 E-value=1.3e+02 Score=28.92 Aligned_cols=121 Identities=21% Similarity=0.158 Sum_probs=72.1
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
-.+++.+..+.|++.+=++-.+.+-.+.+..+..- .+ +..+++ ..|.++++.+.+.. ..+++++.
T Consensus 29 a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~----------~p--~~~IGA-GTVl~~~~a~~a~~--aGA~Fivs 93 (212)
T PRK05718 29 AVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKE----------VP--EALIGA-GTVLNPEQLAQAIE--AGAQFIVS 93 (212)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHH----------CC--CCEEEE-eeccCHHHHHHHHH--cCCCEEEC
Confidence 36677777778888765553222111112222110 11 233333 46888877655543 35778777
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 015764 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (401)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~ev~~l~~~~ 203 (401)
-..+. .++...+..+--++-.+.|+.| +..+++.|+|-|-+-|.+ ++-++.|+..+
T Consensus 94 P~~~~------~vi~~a~~~~i~~iPG~~TptE---i~~a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~ 153 (212)
T PRK05718 94 PGLTP------PLLKAAQEGPIPLIPGVSTPSE---LMLGMELGLRTFKFFPAEASGGVKMLKALAGPF 153 (212)
T ss_pred CCCCH------HHHHHHHHcCCCEeCCCCCHHH---HHHHHHCCCCEEEEccchhccCHHHHHHHhccC
Confidence 55443 4555555556667779999999 456889999999998865 45555555554
No 177
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=43.90 E-value=27 Score=32.32 Aligned_cols=60 Identities=27% Similarity=0.438 Sum_probs=38.7
Q ss_pred CCCCeeeecCC----ceeEEEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 015764 269 ASRPFRVNAGP----VHAYVLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 269 a~RPFRVNAGa----VHaYv~~-p-ggkT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
..|||-+--.| +.=.|.. | |.-|+||.+ |+.||+|.+....|... .. +...+|++||=+-
T Consensus 56 ~~R~ySi~s~~~~~~l~~~ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~~~---~~--~~~~~~llliagG 122 (247)
T cd06184 56 QIRQYSLSDAPNGDYYRISVKREPGGLVSNYLHDNVKVGDVLEVSAPAGDFV---LD--EASDRPLVLISAG 122 (247)
T ss_pred eeEEeEeccCCCCCeEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCCCceE---CC--CCCCCcEEEEecc
Confidence 35677663322 3334443 3 666999998 99999999988888642 11 1135788887543
No 178
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=43.89 E-value=96 Score=28.95 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=38.9
Q ss_pred cChhhhhhhcccc--CCCCeEEEeCC-CCeeeehhhhhhcccCCCceEEEEc----CCHHHH-HHHHHHhhcccCeEEE-
Q 015764 118 STPQELQQLQPAD--GQAENIVIDLP-DWQVIPAENIVASFQGSGKTVFAIS----KTPSEA-QIFLEALEQGLGGIVL- 188 (401)
Q Consensus 118 ~~~e~~e~~~~~~--~~~~~vvv~~~-DW~iIPlENliA~~q~~~~~l~a~v----~~~~eA-~~al~~LE~G~DGVvl- 188 (401)
.+++++++++... ..+|++-+.+. |.+. ++.+++.. +..+++.- .|.+++ +.+-++++.|++||.+
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~~~~--~~~i~~~~---~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGDAES--FKEVVEGC---PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCCHHH--HHHHHhcC---CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 3456666532222 35788888532 1111 34444433 33355532 344443 3456788999999986
Q ss_pred ----ecCCHHH
Q 015764 189 ----KVEDVKA 195 (401)
Q Consensus 189 ----~~~d~~e 195 (401)
..+||.+
T Consensus 215 ~~i~~~~dp~~ 225 (235)
T cd00958 215 RNIFQRPDPVA 225 (235)
T ss_pred hhhhcCCCHHH
Confidence 4456543
No 179
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=43.83 E-value=1.6e+02 Score=25.24 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (401)
..+.++++......-. -+++..++.. ...++... +..+......+++.|+++++.+|.+++++.+.-..
T Consensus 45 ~~dlvi~d~~~~~~~g-~~~~~~l~~~~~~~~ii~ls-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~ 115 (204)
T PRK09958 45 KPDIVIIDVDIPGVNG-IQVLETLRKRQYSGIIIIVS-AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEA 115 (204)
T ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHhhCCCCeEEEEe-CCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHH
Confidence 4677777543333222 2344444432 23444443 34455666788999999999999999877655443
No 180
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=43.58 E-value=63 Score=31.90 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=35.7
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
..+|-.+++|.+||+.+ ++.|+|.|.|.+=.+++++++.+.+
T Consensus 182 ~~~Igvev~s~eea~~A---~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 182 TLKIEVEVETLEQLKEA---LEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred CCeEEEEECCHHHHHHH---HHcCCCEEEECCcCHHHHHHHHHHc
Confidence 34789999999998766 4789999999999999998877765
No 181
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.51 E-value=1.5e+02 Score=27.46 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=70.5
Q ss_pred chhHhHHHHHhCCcEEEEcCcc---hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCe
Q 015764 59 SKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAEN 135 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~ 135 (401)
-.+++.++++.|++.+=++..+ .+..+...++ .++. .+ ....+...++.+.+.. ..++.
T Consensus 26 ~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~---~~~~------------~~-g~gtvl~~d~~~~A~~--~gAdg 87 (187)
T PRK07455 26 GLQMAEAVAAGGMRLIEITWNSDQPAELISQLREK---LPEC------------II-GTGTILTLEDLEEAIA--AGAQF 87 (187)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHh---CCCc------------EE-eEEEEEcHHHHHHHHH--cCCCE
Confidence 3678899999999988887443 2222222222 1110 01 1224555666555433 26788
Q ss_pred EEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC----HHHHHHHHHhh
Q 015764 136 IVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED----VKAVLALKEYF 203 (401)
Q Consensus 136 vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d----~~ev~~l~~~~ 203 (401)
+++-..|-.+++.-+... ...++. +.|++|+..+. +.|+|=|-+-|.+ ++-+++++..+
T Consensus 88 v~~p~~~~~~~~~~~~~~-----~~~i~G-~~t~~e~~~A~---~~Gadyv~~Fpt~~~~G~~~l~~~~~~~ 150 (187)
T PRK07455 88 CFTPHVDPELIEAAVAQD-----IPIIPG-ALTPTEIVTAW---QAGASCVKVFPVQAVGGADYIKSLQGPL 150 (187)
T ss_pred EECCCCCHHHHHHHHHcC-----CCEEcC-cCCHHHHHHHH---HCCCCEEEECcCCcccCHHHHHHHHhhC
Confidence 988777877776554332 234555 89999986555 6899999776654 45555555543
No 182
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=43.45 E-value=17 Score=26.40 Aligned_cols=38 Identities=32% Similarity=0.527 Sum_probs=31.2
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE 323 (401)
+.+||.+-.--+|..+|.=..+ .+|+-+..++|.++|.
T Consensus 1 iV~PG~~l~~~~e~~~G~GTY~--~~g~I~asv~G~v~~~ 38 (39)
T PF14382_consen 1 IVVPGDRLGSSEEYMPGHGTYV--RDGNIYASVAGTVKID 38 (39)
T ss_dssp EE-TT-EEEETTTSEESTTEEE--ETTEEEESSSEEEEEE
T ss_pred CCCCCCEeecCCCEecCCCEEE--eCCEEEEEeeEEEEEc
Confidence 4579999888889999999888 5699999999999975
No 183
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=43.34 E-value=88 Score=36.96 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=59.5
Q ss_pred eeEEEEEEEEEcCCcceE-EE---eecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee---e--cCCceeEEE
Q 015764 215 LMKATVTRVDVAGMGDRV-CV---DLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV---N--AGPVHAYVL 285 (401)
Q Consensus 215 L~~atVt~V~~vGmGDRV-CV---Dtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRV---N--AGaVHaYv~ 285 (401)
+-.|+|.+++.++-+-.- .| +.+-..+||+=+.|-.+ +....+...+|||-+ + .|-+--.+.
T Consensus 790 ~l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~---------~~g~~~l~~p~P~SI~~vD~e~g~It~i~r 860 (1028)
T PRK06567 790 LLTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNY---------SEDAAKLIEPVALSPIDIDVEKGLISFIVF 860 (1028)
T ss_pred hhceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeC---------CCCCccccCceeEEeeccCCCCCEEEEEEE
Confidence 446888888888765322 22 11223567764333321 111123457789987 2 355666777
Q ss_pred ecCCceeeeeeccCCCeEEEEcCCCCeeE
Q 015764 286 VPGGKTCYLSELKSGKEVIVVDQKGRQRT 314 (401)
Q Consensus 286 ~pggkT~YLSEL~sG~eVLvVd~~G~tR~ 314 (401)
.-|.-|++|++|+.||.|-+...-|+.-.
T Consensus 861 vVGkgT~~Ls~l~~Gd~v~v~GPLG~pF~ 889 (1028)
T PRK06567 861 EVGKSTSLCKTLSENEKVVLMGPTGSPLE 889 (1028)
T ss_pred EEChHHHHHhcCCCCCEEEEEcccCCCCC
Confidence 77999999999999999999999997533
No 184
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=43.30 E-value=1.7e+02 Score=28.40 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=80.4
Q ss_pred chhHhHHHHHhCCc--EEEEcCcc-----hhhHhhccceee-eee--eeecCC---------------------------
Q 015764 59 SKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIAL-LDP--LFIKEG--------------------------- 101 (401)
Q Consensus 59 ~K~~vt~AlEsG~~--~~v~~~~~-----~~~~~~~~~i~~-i~~--l~~~~g--------------------------- 101 (401)
+.+-+.+|.+.|+| +|||.+.. .+.++++.+-.. ++. +|.+..
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e~~~~~ 90 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDEDPEYI 90 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 46778889999999 47776532 345554444332 111 122221
Q ss_pred ccccCC-CCeeEEEEEecChhhhhhhccccCCCCeEEEeCC------------CCeeeehhhhhhcccCCCceEEEEcCC
Q 015764 102 EVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP------------DWQVIPAENIVASFQGSGKTVFAISKT 168 (401)
Q Consensus 102 ~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~------------DW~iIPlENliA~~q~~~~~l~a~v~~ 168 (401)
+-+++. +.++--.+.+....+++........++.++++.. ||+++|.= . ....-++|.==|
T Consensus 91 ~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~----~--~~~~~~LAGGL~ 164 (208)
T COG0135 91 DQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL----R--LSKPVMLAGGLN 164 (208)
T ss_pred HHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc----c--ccCCEEEECCCC
Confidence 111222 3455555566655555666666777999999883 89877754 1 123357777778
Q ss_pred HHHHHHHHHHhh-cccC---eEEEec--CCHHHHHHHHHh
Q 015764 169 PSEAQIFLEALE-QGLG---GIVLKV--EDVKAVLALKEY 202 (401)
Q Consensus 169 ~~eA~~al~~LE-~G~D---GVvl~~--~d~~ev~~l~~~ 202 (401)
++..+.++...- .|+| ||=-.| .|++.|+++-+.
T Consensus 165 p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~kv~~f~~~ 204 (208)
T COG0135 165 PDNVAEAIALGPPYGVDVSSGVESSPGIKDPAKVKAFFEA 204 (208)
T ss_pred HHHHHHHHHhcCCceEEeccccccCCCCCCHHHHHHHHHH
Confidence 888888777766 5554 333332 366666655443
No 185
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=43.05 E-value=1.6e+02 Score=26.81 Aligned_cols=90 Identities=13% Similarity=0.016 Sum_probs=52.6
Q ss_pred eEEEEEecChhh--hhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHH-HHHHHHHhhcccCeEE
Q 015764 111 VGSIIEVSTPQE--LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSE-AQIFLEALEQGLGGIV 187 (401)
Q Consensus 111 v~~~~~v~~~e~--~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~e-A~~al~~LE~G~DGVv 187 (401)
+..-.++.++.. .+.+. ...++++++....-. .=++.++...+..+..++..+.++.+ ...+..+++.|+|-|-
T Consensus 55 i~~d~k~~d~~~~~~~~~~--~~Gad~i~vh~~~~~-~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~ 131 (206)
T TIGR03128 55 VLADLKTMDAGEYEAEQAF--AAGADIVTVLGVADD-ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIG 131 (206)
T ss_pred EEEEEeeccchHHHHHHHH--HcCCCEEEEeccCCH-HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEE
Confidence 333344556663 33322 335888988776321 11366777777777788877644422 2334445677999888
Q ss_pred EecC---------CHHHHHHHHHhh
Q 015764 188 LKVE---------DVKAVLALKEYF 203 (401)
Q Consensus 188 l~~~---------d~~ev~~l~~~~ 203 (401)
+.|. .++.++++++.+
T Consensus 132 ~~pg~~~~~~~~~~~~~i~~l~~~~ 156 (206)
T TIGR03128 132 VHTGLDEQAKGQNPFEDLQTILKLV 156 (206)
T ss_pred EcCCcCcccCCCCCHHHHHHHHHhc
Confidence 8653 345566666554
No 186
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=43.05 E-value=2.7e+02 Score=25.87 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=61.1
Q ss_pred hhHhHHHHHhCCcEEEEcCc-chhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 60 KQVMTAAVERGWNTFVFLSE-NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~-~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
.++..++++.|++.+-+... +.+.+++..++..+.+ +..+ ++.....++. +.++++.+.. ..++.+++
T Consensus 30 ~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~-~~~~---~~~~~~~ig~-----~~~~~~~a~~--aGad~I~~ 98 (219)
T cd04729 30 AAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGL-IKRD---YPDSEVYITP-----TIEEVDALAA--AGADIIAL 98 (219)
T ss_pred HHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEE-EecC---CCCCCceeCC-----CHHHHHHHHH--cCCCEEEE
Confidence 67788899999988665432 2333333333322211 0111 1111101111 2234333332 25677777
Q ss_pred eCCC---CeeeehhhhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 139 DLPD---WQVIPAENIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 139 ~~~D---W~iIPlENliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
+... ..--.+++++.++.... -.++..+.+.+||+. +.+.|+|.+.+.
T Consensus 99 ~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t~~ea~~---a~~~G~d~i~~~ 150 (219)
T cd04729 99 DATDRPRPDGETLAELIKRIHEEYNCLLMADISTLEEALN---AAKLGFDIIGTT 150 (219)
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCCHHHHHH---HHHcCCCEEEcc
Confidence 5432 21124567776655444 677888999999844 566799998764
No 187
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=42.49 E-value=31 Score=32.78 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=27.5
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEcCc
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
.+.++|++|| .+.+.|...++.|+|+|+.+..
T Consensus 207 ~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 207 AAGLRILVYTVNDPARARELLRWGVDCICTDRI 239 (249)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCCh
Confidence 4577899999 5699999999999999998653
No 188
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=42.37 E-value=1.6e+02 Score=27.25 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=55.5
Q ss_pred eeeEEEEEEEEEcCCc-ceEEEeecC---CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee------cCCceeE
Q 015764 214 SLMKATVTRVDVAGMG-DRVCVDLCS---LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN------AGPVHAY 283 (401)
Q Consensus 214 ~L~~atVt~V~~vGmG-DRVCVDtcs---ll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVN------AGaVHaY 283 (401)
....++|++++.+.-+ -++.+.... -++||+=+-|. +..+.. ...|||-+- .|-+-=+
T Consensus 16 ~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~--------~~~~~~----~~~r~ysi~s~~~~~~~~l~~~ 83 (243)
T cd06216 16 RELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLG--------VEIDGV----RHWRSYSLSSSPTQEDGTITLT 83 (243)
T ss_pred ceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEE--------EEECCe----EEEEEEeccCCCcCCCCeEEEE
Confidence 3447889999887432 244444322 24555544332 111110 113444443 3334444
Q ss_pred EEe-c-CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEe-ccceeEEEE
Q 015764 284 VLV-P-GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVEA 332 (401)
Q Consensus 284 v~~-p-ggkT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE-~RPLlLVeA 332 (401)
+.. | |.-|.||.+ |+.||+|.+-...|+-. .+-+ .+|+++|=+
T Consensus 84 ik~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~------l~~~~~~~~v~iag 130 (243)
T cd06216 84 VKAQPDGLVSNWLVNHLAPGDVVELSQPQGDFV------LPDPLPPRLLLIAA 130 (243)
T ss_pred EEEcCCCcchhHHHhcCCCCCEEEEECCceeee------cCCCCCCCEEEEec
Confidence 444 4 445899986 99999999987777521 1222 578887744
No 189
>PRK05802 hypothetical protein; Provisional
Probab=42.13 E-value=18 Score=36.15 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=52.5
Q ss_pred eeEEEEEEEEEcCCcc-eEEEeec-----CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeE
Q 015764 215 LMKATVTRVDVAGMGD-RVCVDLC-----SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAY 283 (401)
Q Consensus 215 L~~atVt~V~~vGmGD-RVCVDtc-----sll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaY 283 (401)
--+++|++++.+.-.- ++-++.- ..++||+ +.+|-..+ .+-...|||-+- .|-+-=.
T Consensus 64 ~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQ---------Fv~l~~~~---~~~~~~rP~SI~~~~~~~g~l~l~ 131 (320)
T PRK05802 64 TYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGS---------FVFLRNKN---SSSFFDVPISIMEADTEENIIKVA 131 (320)
T ss_pred cEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCc---------eEEEEEcC---CCCEeEEeeEecccCCCCCEEEEE
Confidence 3468888888875432 2223322 1245665 33332211 111234888873 2434444
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCe
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQ 312 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~t 312 (401)
+..-|..|+||.+|+.||+|.+...-|+.
T Consensus 132 ik~~G~~T~~L~~l~~Gd~l~v~GP~GnG 160 (320)
T PRK05802 132 IEIRGVKTKKIAKLNKGDEILLRGPYWNG 160 (320)
T ss_pred EEecChhHHHHhcCCCCCEEEEeCCCCcC
Confidence 55568889999999999999999998664
No 190
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=42.09 E-value=28 Score=36.17 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=42.0
Q ss_pred ChhhhhhhccccCC---CCeEEEeCC-CCeeeehhhhhhcccCC--CceEEEE-cCCHHHHHHHHHHhhcccCeEEEe
Q 015764 119 TPQELQQLQPADGQ---AENIVIDLP-DWQVIPAENIVASFQGS--GKTVFAI-SKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 119 ~~e~~e~~~~~~~~---~~~vvv~~~-DW~iIPlENliA~~q~~--~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
.++|.+++..+... .|+++|+.. +...- .-+.|+.+... +..|++. +-++++|+.+ ++.|+|||.+.
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~-~i~~ik~ir~~~p~~~viaGNV~T~e~a~~L---i~aGAD~ikVg 178 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEH-FVEFVKLVREAFPEHTIMAGNVVTGEMVEEL---ILSGADIVKVG 178 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHH-HHHHHHHHHhhCCCCeEEEecccCHHHHHHH---HHcCCCEEEEc
Confidence 46667776666543 799999866 33322 22333333322 3467777 8888888755 46799999865
No 191
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=42.02 E-value=1.1e+02 Score=30.02 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=43.0
Q ss_pred ecChhhhhhhccccCCCCeEEEeC-----CCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 117 VSTPQELQQLQPADGQAENIVIDL-----PDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 117 v~~~e~~e~~~~~~~~~~~vvv~~-----~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
+.++++...+. ...++.+++.. .||.+..++.|....+.. +..||+ .......+-++.+|..|+|||.+-
T Consensus 180 v~s~~~a~~a~--~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia-~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 180 ILTPEDALRAV--DAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLL-DGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred cCCHHHHHHHH--HCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEE-eCCCCCHHHHHHHHHcCCCEEEEc
Confidence 56777644433 23678888844 367777777665433322 345554 333444444555566899999998
Q ss_pred cC
Q 015764 190 VE 191 (401)
Q Consensus 190 ~~ 191 (401)
+.
T Consensus 257 ~~ 258 (299)
T cd02809 257 RP 258 (299)
T ss_pred HH
Confidence 74
No 192
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=41.94 E-value=32 Score=32.18 Aligned_cols=31 Identities=10% Similarity=-0.039 Sum_probs=25.8
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEcC
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~ 78 (401)
.+.+.+|+|| .+.+.|...++.|+|+++.+.
T Consensus 203 ~~Gl~v~vwTVn~~~~~~~l~~~GVdgiiTD~ 234 (237)
T cd08583 203 KAGIYVYVYTINDLKDAQEYKKLGVYGIYTDF 234 (237)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCC
Confidence 3567899999 458899999999999998643
No 193
>PRK08051 fre FMN reductase; Validated
Probab=41.92 E-value=2e+02 Score=26.69 Aligned_cols=96 Identities=21% Similarity=0.197 Sum_probs=53.8
Q ss_pred EEEEEEEEEcCCcce-EEEee--cCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeee-----cCCceeEEEe-c
Q 015764 217 KATVTRVDVAGMGDR-VCVDL--CSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVN-----AGPVHAYVLV-P 287 (401)
Q Consensus 217 ~atVt~V~~vGmGDR-VCVDt--csll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVN-----AGaVHaYv~~-p 287 (401)
+++|+++++++-+=. +++.. ---++||+=+.|. -.+- ..|||-+- .|...=++.. |
T Consensus 4 ~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~---------~~~~------~~r~ySias~p~~~~~l~~~v~~~~ 68 (232)
T PRK08051 4 SCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVV---------MGEK------DKRPFSIASTPREKGFIELHIGASE 68 (232)
T ss_pred EEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEE---------cCCC------cceeecccCCCCCCCcEEEEEEEcC
Confidence 578888887763221 23321 1135666644443 1111 24666652 3344434555 4
Q ss_pred CCc--eeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 288 GGK--TCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 288 ggk--T~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
+|+ +.++..|+.||+|.+-...|+.-.. . -..+|+++|=+
T Consensus 69 ~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~---~--~~~~~~vliag 110 (232)
T PRK08051 69 LNLYAMAVMERILKDGEIEVDIPHGDAWLR---E--ESERPLLLIAG 110 (232)
T ss_pred CCcchHHHHHHcCCCCEEEEEcCCCceEcc---C--CCCCcEEEEec
Confidence 443 5667899999999999988875221 0 12478887753
No 194
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=41.80 E-value=1.4e+02 Score=27.63 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=19.2
Q ss_pred CchhHhHHHHHhCCcEEEEcCc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
.+.+-+..+++.|++.+++...
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~ 105 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECch
Confidence 5788899999999999998763
No 195
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=41.60 E-value=41 Score=36.15 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=43.2
Q ss_pred ChhhhhhhccccC-CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 119 TPQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 119 ~~e~~e~~~~~~~-~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
++++.+++..+.. .+|.++++..+=.-+=.-++|..+... +..|++ .+.+.++|+.+. +.|+|+|.+.
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~---~aGaD~i~vg 317 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLI---QAGVDGLRVG 317 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHH---HcCcCEEEEC
Confidence 3556666555443 599999988752222222445544432 345654 699999988766 5899999874
No 196
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=41.41 E-value=35 Score=31.72 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEcC
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~ 78 (401)
.+.+.|++|| .+++.|..+++.|+|+++.+.
T Consensus 199 ~~G~~v~~wTvn~~~~~~~l~~~GVdgi~TD~ 230 (233)
T cd08582 199 DAGLKLNVWTVDDAEDAKRLIELGVDSITTNR 230 (233)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHCCCCEEEcCC
Confidence 3577899999 569999999999999998764
No 197
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=41.10 E-value=1.6e+02 Score=27.14 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=54.0
Q ss_pred eeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCeEEEeCCC-Cee-e--ehhhhhhccc---CCCceEEE
Q 015764 93 LDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPD-WQV-I--PAENIVASFQ---GSGKTVFA 164 (401)
Q Consensus 93 i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~D-W~i-I--PlENliA~~q---~~~~~l~a 164 (401)
|..|.+.+|..+... |+.--......+|.++.+..... .++.+.|...+ +.- - -. .+++++- +-+..+-.
T Consensus 3 ip~idl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~-g~d~l~v~dl~~~~~~~~~~~-~~i~~i~~~~~~pv~~~G 80 (234)
T cd04732 3 IPAIDLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEEA-GAKWLHVVDLDGAKGGEPVNL-ELIEEIVKAVGIPVQVGG 80 (234)
T ss_pred EEEEEeECCEEEEeecccCCCCeEECCCHHHHHHHHHHc-CCCEEEEECCCccccCCCCCH-HHHHHHHHhcCCCEEEeC
Confidence 444667777766432 22211123345666555544332 45666664332 200 0 01 1222221 12334445
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
.++++++|+.+++ .|+|.|++.+.-..+...+++++
T Consensus 81 gI~~~e~~~~~~~---~Gad~vvigs~~l~dp~~~~~i~ 116 (234)
T cd04732 81 GIRSLEDIERLLD---LGVSRVIIGTAAVKNPELVKELL 116 (234)
T ss_pred CcCCHHHHHHHHH---cCCCEEEECchHHhChHHHHHHH
Confidence 7788888887774 79999999886544433344444
No 198
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=40.86 E-value=43 Score=31.63 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=26.8
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEcC
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~ 78 (401)
.+-+.+++|| .+.+.+..+++.|+|+++.+.
T Consensus 216 ~~g~~v~~wTvn~~~~~~~l~~~Gvd~IiTD~ 247 (256)
T cd08601 216 KKGLLVHPYTVNEKADMIRLINWGVDGMFTNY 247 (256)
T ss_pred HCCCEEEEEecCCHHHHHHHHhcCCCEEEeCC
Confidence 4567899999 568999999999999999865
No 199
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=40.81 E-value=41 Score=33.50 Aligned_cols=137 Identities=9% Similarity=0.118 Sum_probs=77.7
Q ss_pred EEEEe---CchhHhHHHHHhCCcEEEEcCcc------hhhHhhccceeeee--eeeecCCcccc-CCCCe-eEEEEEecC
Q 015764 53 VWIWT---ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYD-SGDRR-VGSIIEVST 119 (401)
Q Consensus 53 vWiw~---~~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~--~l~~~~g~~~~-~~gk~-v~~~~~v~~ 119 (401)
|.+.- .+.+.+..||+.|++.|.++.-+ .+.++++..++.-. ++-.+.|.+=. +++.. ++ ...++
T Consensus 77 v~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g--~s~t~ 154 (281)
T PRK06806 77 VAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIE--MLLTS 154 (281)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCccccc--ceeCC
Confidence 66633 47899999999999999998543 23344444333311 12223332211 11111 12 24688
Q ss_pred hhhhhhhccccCCCCeEEEeC-------CCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 015764 120 PQELQQLQPADGQAENIVIDL-------PDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (401)
Q Consensus 120 ~e~~e~~~~~~~~~~~vvv~~-------~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (401)
+++..++.... .+||+-+.. .+...|.+|-|=.--+..+.-|++.=.|--...-+-.+.+.|+++|-+.++=
T Consensus 155 ~eea~~f~~~t-g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i 233 (281)
T PRK06806 155 TTEAKRFAEET-DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINVATAT 233 (281)
T ss_pred HHHHHHHHHhh-CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHH
Confidence 99877766543 578888821 2344566664332222234456666533322333556799999999998874
No 200
>PF14623 Vint: Hint-domain
Probab=40.76 E-value=46 Score=31.32 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=52.6
Q ss_pred eeEEEecCCce-eeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec--cceeEEEE-------------Ee----------
Q 015764 281 HAYVLVPGGKT-CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES--RPLILVEA-------------KT---------- 334 (401)
Q Consensus 281 HaYv~~pggkT-~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~--RPLlLVeA-------------e~---------- 334 (401)
++-|.+.+|++ .-.++|++|+.|.. ..|..|.+.|=+.+++. -+|..|.- +-
T Consensus 6 ~s~V~l~~~~~~v~i~~lR~G~~V~t--p~G~r~V~~Vlkt~v~~~~~~lc~vg~LlvTPwHPv~~~g~W~FP~~~~~~~ 83 (162)
T PF14623_consen 6 SSLVTLASGRAPVRIDDLRAGDKVWT--PRGPRKVAAVLKTPVESGSEDLCRVGGLLVTPWHPVRIGGKWVFPADMASPQ 83 (162)
T ss_pred CcEEEEecCceeEEHHHccCCCEEEC--CCCCeEEEEEEEEeecCCceEEEEECCEEEcCCCCeeeCceeeCChhhccCc
Confidence 56788899999 99999999999876 55888888888888877 55554421 00
Q ss_pred cCCCCeEEEEEeEecceEEE
Q 015764 335 NSGDQTLYGIILQNAETVAL 354 (401)
Q Consensus 335 ~~~~G~~~sviLQnAETIRL 354 (401)
...-+..+|++||++-.|++
T Consensus 84 ~~~~~~VYSvlL~~~Hai~V 103 (162)
T PF14623_consen 84 VVYCGFVYSVLLEPDHAIMV 103 (162)
T ss_pred ccccccEEEEEEcCCCEEEE
Confidence 00123468999999977777
No 201
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=40.76 E-value=2.7e+02 Score=26.60 Aligned_cols=125 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred CchhHhHHHHHhCCcEEEEcC---cchhhHhhcccee---eeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 015764 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA---LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i~---~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 131 (401)
++.+-+..+++.|++.+++.. .+.++++++.+-- .+-.+-+.++.+.-..-.. ...++.++-......
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~-----~~~~~~~~~~~l~~~- 158 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTR-----DGGDLWEVLERLDSA- 158 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeee-----cCccHHHHHHHHHhc-
Q ss_pred CCCeEEEeCCCC----eeeehhhhhhcccCCCceEEEEc--CCHHHHHHHHHHhhcccCeEEE
Q 015764 132 QAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAIS--KTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 132 ~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a~v--~~~~eA~~al~~LE~G~DGVvl 188 (401)
.++.+++...+= +=+.+|-+-.-.+..+..|++.= .|++|++.++...+.|+|||++
T Consensus 159 G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 159 GCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred CCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
No 202
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.54 E-value=1.7e+02 Score=27.85 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=58.9
Q ss_pred eeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCC----eeeehhhhhhcc-cCCCceEE--EE
Q 015764 93 LDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDW----QVIPAENIVASF-QGSGKTVF--AI 165 (401)
Q Consensus 93 i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW----~iIPlENliA~~-q~~~~~l~--a~ 165 (401)
|..|.+.+|..+..... .......++.++.+..... .++.+.+...|= +-..++.+ .++ +..+..|+ ..
T Consensus 7 ip~idl~~g~~V~~~~~--~~~~~~~d~~~~a~~~~~~-G~~~i~i~dl~~~~~~~~~~~~~i-~~i~~~~~ipv~~~GG 82 (253)
T PRK02083 7 IPCLDVKDGRVVKGVNF--VNLRDAGDPVELAKRYNEE-GADELVFLDITASSEGRDTMLDVV-ERVAEQVFIPLTVGGG 82 (253)
T ss_pred EEEEEEECCEEEEeEEe--cceeecCCHHHHHHHHHHc-CCCEEEEEeCCcccccCcchHHHH-HHHHHhCCCCEEeeCC
Confidence 44466777776653221 1112345677666655544 356666554432 22333333 222 22223344 47
Q ss_pred cCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHHhh
Q 015764 166 SKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKEYF 203 (401)
Q Consensus 166 v~~~~eA~~al~~LE~G~DGVvl~~---~d~~ev~~l~~~~ 203 (401)
+++.++++.++. .|+|+|++.+ .+|+.+.++.+.+
T Consensus 83 i~s~~~~~~~l~---~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 83 IRSVEDARRLLR---AGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred CCCHHHHHHHHH---cCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 889999988876 6999999999 5666666555443
No 203
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=40.53 E-value=38 Score=30.66 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCceeEEEec--CCceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEe-ccceeEEEE
Q 015764 278 GPVHAYVLVP--GGKTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIE-SRPLILVEA 332 (401)
Q Consensus 278 GaVHaYv~~p--ggkT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE-~RPLlLVeA 332 (401)
|-+.=++..- |.-|+||.. |+.||.|.+....|+.. .+-+ .+|+++|=+
T Consensus 54 ~~~~~~i~~~~~G~~s~~l~~~l~~G~~v~i~gP~G~~~------~~~~~~~~~lliag 106 (224)
T cd06187 54 GEIEFHVRAVPGGRVSNALHDELKVGDRVRLSGPYGTFY------LRRDHDRPVLCIAG 106 (224)
T ss_pred CEEEEEEEeCCCCcchHHHhhcCccCCEEEEeCCccceE------ecCCCCCCEEEEec
Confidence 4556666664 556899987 99999999999988753 2223 578887743
No 204
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=40.44 E-value=1.3e+02 Score=26.01 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
..+.++++..-...-.+ .++..++. ....++... ...+......+++.|+++++.+|-+++++.+..
T Consensus 44 ~~d~illd~~~~~~~g~-~~~~~l~~~~~~~pii~ls-~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i 112 (222)
T PRK10643 44 HYSLVVLDLGLPDEDGL-HLLRRWRQKKYTLPVLILT-ARDTLEDRVAGLDVGADDYLVKPFALEELHARI 112 (222)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Confidence 35677775432222122 23333332 233455443 344556678889999999999999998876443
No 205
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=40.44 E-value=35 Score=31.66 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=25.9
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEc
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~ 77 (401)
.+.+.+++|| .+++.+..+++.|+|+|+.+
T Consensus 198 ~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD 228 (230)
T cd08563 198 KRGIPVRLWTVNEEEDMKRLKDLGVDGIITN 228 (230)
T ss_pred HCCCEEEEEecCCHHHHHHHHHCCCCEEeCC
Confidence 3567899999 57999999999999999864
No 206
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=40.22 E-value=38 Score=31.97 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=25.4
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEc
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~ 77 (401)
...++|++|| .+.+.|...++.|+|+++.+
T Consensus 197 ~~G~~v~vWTVn~~~~~~~l~~~GVdgiiTD 227 (229)
T cd08581 197 AGTWKWVIYEVNEPAEALALAARGVALIETD 227 (229)
T ss_pred hCCceEEEEEcCCHHHHHHHHHhCCcEEEcC
Confidence 3556799999 57888999999999999864
No 207
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=40.11 E-value=31 Score=35.44 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=23.5
Q ss_pred cceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecC--------------CCcccceeee
Q 015764 349 AETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQG--------------AARHTGIEIQ 395 (401)
Q Consensus 349 AETIRLv~p~~g~~~~g~~vsVt~LK~GD~VL~~~~~--------------~gRHfG~~I~ 395 (401)
.+-|+++..+ .|.||+..++|.|.+|.|-.-. +.||||+.++
T Consensus 293 PDLI~~ld~~-----tG~pi~~~~~~~G~~V~Vi~~p~~~~w~t~~gl~~~gP~~FG~d~~ 348 (353)
T PF06032_consen 293 PDLICLLDAE-----TGEPITTEELRYGQRVAVIAIPAPPLWRTPEGLEVVGPRAFGYDID 348 (353)
T ss_dssp TSEEEEEE-S-----SS-----HHTTTTS-EEEEEE---GGGSS--HHHHHHHHCTT--S-
T ss_pred CcEEEEEecC-----CceecCcccccCCCEEEEEEeeCChhhcchhchhhcChhhcCCCCC
Confidence 4667888777 3799999999999999986422 2578887664
No 208
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=39.90 E-value=38 Score=34.18 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCcEEEEEe-CchhHhHHHHHhCCcEEEEcCcchhhHhhc
Q 015764 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (401)
Q Consensus 49 ~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~ 87 (401)
..+++++|| .+.+.|...++.|+|+|+.+. .++.+++
T Consensus 244 ~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~~ 281 (315)
T cd08609 244 DNVSVNLWVVNEPWLFSLLWCSGVSSVTTNA--CQLLKDM 281 (315)
T ss_pred CCCEEEEECCCCHHHHHHHHhcCCCEEEcCC--HHHHHHh
Confidence 567899999 568999999999999999755 4455444
No 209
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=39.80 E-value=2.3e+02 Score=27.42 Aligned_cols=91 Identities=26% Similarity=0.379 Sum_probs=55.5
Q ss_pred EecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe---cCCCCeE----EEEEeEecceEEEecC
Q 015764 285 LVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT---NSGDQTL----YGIILQNAETVALVSP 357 (401)
Q Consensus 285 ~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~---~~~~G~~----~sviLQnAETIRLv~p 357 (401)
.+||+.-. -+|..+|+-+.. .+|+-+....|++++..+ ++.|+... -..-|.. +.-+-.+-+.+.+-.+
T Consensus 11 V~PGd~l~-~~~~~~G~Gty~--~~g~i~As~~G~~~~~~~-~i~V~p~~~~y~P~vGDiViG~V~~i~~~~~~vdI~~~ 86 (235)
T PRK04163 11 VVPGDLLA-EGEFKAGRGTYK--ENGKIYSTVVGLVDIKDD-KVRVIPLEGKYIPKVGDLVIGKVTDVTFSGWEVDINSP 86 (235)
T ss_pred ECCCCCcC-cCCeecCCceEE--eCCEEEEEEeEEEEEECC-EEEEEECCCcccCCCCCEEEEEEEEEeCceEEEEeCCC
Confidence 46888865 478888888754 689999999999998764 44444411 0001111 2334556666666322
Q ss_pred CCCCCCCCceeeeee----------------cCCCCEEEEEecC
Q 015764 358 CKGTGEQEKAIPVTS----------------LKVGDEVLLRVQG 385 (401)
Q Consensus 358 ~~g~~~~g~~vsVt~----------------LK~GD~VL~~~~~ 385 (401)
-. .-++..+ |++||.|.+++..
T Consensus 87 ~~------g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~ 124 (235)
T PRK04163 87 YK------AYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKD 124 (235)
T ss_pred ce------eEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEE
Confidence 10 1122222 7999999999764
No 210
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=39.62 E-value=35 Score=31.60 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=34.3
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEE-cCCCCeeEEeeeeEEE-eccceeEEEEE
Q 015764 278 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVV-DQKGRQRTAVVGRVKI-ESRPLILVEAK 333 (401)
Q Consensus 278 GaVHaYv~~-p-ggkT~YLSEL~sG~eVLvV-d~~G~tR~~~VGRvKI-E~RPLlLVeAe 333 (401)
|-+.=++.. + |.-|+||.+|+.||.|.+- ...|....- . . ..+|++||=+-
T Consensus 56 ~~i~~~i~~~~~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~---~--~~~~~~~vlIagG 110 (241)
T cd06195 56 ENLEFYIILVPDGPLTPRLFKLKPGDTIYVGKKPTGFLTLD---E--VPPGKRLWLLATG 110 (241)
T ss_pred CeEEEEEEEecCCCCchHHhcCCCCCEEEECcCCCCceeec---C--CCCCceEEEEeec
Confidence 444444432 3 5668899999999999998 888875321 1 1 24788887543
No 211
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=39.27 E-value=25 Score=36.42 Aligned_cols=78 Identities=32% Similarity=0.416 Sum_probs=50.3
Q ss_pred eeeeeccCCCeEEEEc-----CCCCeeEEeeeeEEEeccceeEEEEEecCCCCeE--EEEEeEecceE--EEecCCCCCC
Q 015764 292 CYLSELKSGKEVIVVD-----QKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTL--YGIILQNAETV--ALVSPCKGTG 362 (401)
Q Consensus 292 ~YLSEL~sG~eVLvVd-----~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~--~sviLQnAETI--RLv~p~~g~~ 362 (401)
+-...|.+||+|.+ | +.|+. .+||-- .|-|+||.+|.. +..- -.-|=-||-.| .+..|+
T Consensus 205 t~ieplG~gDRVCV-DTcsLm~~gEG--MLVGs~---s~gmFlVhsEs~--espYVAaRPFRVNAG~VhaYi~vPg---- 272 (376)
T COG1465 205 TEIEPLGSGDRVCV-DTCSLMTRGEG--MLVGSQ---SRGMFLVHSESE--ESPYVAARPFRVNAGAVHAYIRVPG---- 272 (376)
T ss_pred EEEeecCCCceEEE-eeecccccCCc--eEeecc---cCcEEEEecccc--cCcccccCceeecccceeEEEEcCC----
Confidence 44667888888854 3 23433 677765 688999999874 2211 12344465543 345566
Q ss_pred CCCceeeeeecCCCCEEEEEe
Q 015764 363 EQEKAIPVTSLKVGDEVLLRV 383 (401)
Q Consensus 363 ~~g~~vsVt~LK~GD~VL~~~ 383 (401)
|+.-=..+||+||+|++.-
T Consensus 273 --~kTkYLaEL~aGDeV~iVD 291 (376)
T COG1465 273 --GKTKYLAELKAGDEVLIVD 291 (376)
T ss_pred --CceEEhhhhcCCCeEEEEe
Confidence 4556789999999999874
No 212
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=39.18 E-value=2.3e+02 Score=28.05 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=60.4
Q ss_pred chhHhHHHHHhCCcEEEEcCcc--hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 59 SKQVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~--~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
+.-.|-.|-..|+|+++.--.- .+.-+++-+.+. .-|- -++++|.+.+|++.+... .++.+
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~-------------~lGl--e~lVEVh~~~El~~al~~--~a~ii 182 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAH-------------SLGL--EALVEVHNEEELERALEA--GADII 182 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHH-------------HTT---EEEEEESSHHHHHHHHHT--T-SEE
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHH-------------HcCC--CeEEEECCHHHHHHHHHc--CCCEE
Confidence 4667788899999998764321 111111111111 1122 267899999999886632 56778
Q ss_pred EEeCCCCee--eeh---hhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 015764 137 VIDLPDWQV--IPA---ENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 137 vv~~~DW~i--IPl---ENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
-|+-+|-+- |.+ +.|...+.. +.-++++ +++.+|++.+ .+.|+|||++-+
T Consensus 183 GINnRdL~tf~vd~~~~~~l~~~ip~-~~~~iseSGI~~~~d~~~l---~~~G~davLVGe 239 (254)
T PF00218_consen 183 GINNRDLKTFEVDLNRTEELAPLIPK-DVIVISESGIKTPEDARRL---ARAGADAVLVGE 239 (254)
T ss_dssp EEESBCTTTCCBHTHHHHHHHCHSHT-TSEEEEESS-SSHHHHHHH---CTTT-SEEEESH
T ss_pred EEeCccccCcccChHHHHHHHhhCcc-ceeEEeecCCCCHHHHHHH---HHCCCCEEEECH
Confidence 888765432 222 233333332 2334443 4566776654 588999999753
No 213
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=39.16 E-value=42 Score=33.94 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=29.6
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEcCcchhhHhhc
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAIDW 87 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~ 87 (401)
...+.|++|| .+.+.|...++.|+|+++.+. .+...++
T Consensus 243 ~~Gl~V~vWTVNd~~~~~~l~~~GVDgIiTD~--P~~l~~~ 281 (316)
T cd08610 243 AANIHTNVYVINEPWLFSLAWCSGIHSVTTNN--IHLLKQL 281 (316)
T ss_pred HCCCEEEEECCCCHHHHHHHHhCCcCEEEeCC--HHHHHHh
Confidence 3567899999 568999999999999999865 3444433
No 214
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=39.03 E-value=2.5e+02 Score=26.92 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=61.6
Q ss_pred CchhHhHHHHHhCCcEEEEcCc---chhhHhhccce----eeeeeeeecCCccccCCCCeeEEEEEec-Chhhhhhhccc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPA 129 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i----~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~ 129 (401)
.+.+-+..+++.|++.+++... +.++.+++.+- ..+--|-..+|.+.....-.+.+..-.. +.++...++..
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~ 163 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKE 163 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHH
Confidence 5788899999999999998753 34555555422 1121122233332211111222211111 22232333322
Q ss_pred c--CCCCeEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcc-cCeEEEec
Q 015764 130 D--GQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQG-LGGIVLKV 190 (401)
Q Consensus 130 ~--~~~~~vvv~~~---------DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G-~DGVvl~~ 190 (401)
+ ...+.+++... ||.. +..+... .+..|++. +.++++++ ++++.| +|||++.+
T Consensus 164 l~~~G~~~iivt~i~~~g~~~g~~~~~--~~~i~~~---~~ipvia~GGi~s~~di~---~~~~~g~~dgv~~g~ 230 (254)
T TIGR00735 164 VEKLGAGEILLTSMDKDGTKSGYDLEL--TKAVSEA---VKIPVIASGGAGKPEHFY---EAFTKGKADAALAAS 230 (254)
T ss_pred HHHcCCCEEEEeCcCcccCCCCCCHHH--HHHHHHh---CCCCEEEeCCCCCHHHHH---HHHHcCCcceeeEhH
Confidence 2 23677777432 2221 2223322 23445543 67777777 455657 99998844
No 215
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=38.93 E-value=1.5e+02 Score=26.68 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=55.5
Q ss_pred hhHhHHHHHhCCcEEEEcCcc---hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
-+.+..|++.|++.+.++..+ .+..+...++..+. +..| ..+-+.+.- .++... +.+-+
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~----------~~~~----~~l~i~~~~---~la~~~-g~~Gv 77 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELC----------RRYG----VPFIVNDRV---DLALAL-GADGV 77 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHH----------HHhC----CeEEEECHH---HHHHHc-CCCEE
Confidence 357788999999998887532 22222222222111 0111 112233321 122222 34555
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
.+...+ ++.+.+-..+ +....|-..+.+.+|++ ++++.|+|=|.+
T Consensus 78 Hl~~~~---~~~~~~r~~~-~~~~~ig~s~h~~~e~~---~a~~~g~dyi~~ 122 (196)
T TIGR00693 78 HLGQDD---LPASEARALL-GPDKIIGVSTHNLEELA---EAEAEGADYIGF 122 (196)
T ss_pred ecCccc---CCHHHHHHhc-CCCCEEEEeCCCHHHHH---HHhHcCCCEEEE
Confidence 554333 3444443322 23457888899998875 477899999986
No 216
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=38.57 E-value=83 Score=30.93 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=35.8
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
...|..+++|.+||+.++ +.|+|.|.|.+=.+++++++.+.+
T Consensus 181 ~~~I~vev~t~eea~~A~---~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 181 EKKIEVEVETLEEAEEAL---EAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred CCeEEEecCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHh
Confidence 357999999999988775 579999999999999998877765
No 217
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=38.46 E-value=1.8e+02 Score=31.70 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=65.7
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 139 (401)
+.+...-.+.|.+.++++.+ .+.++++.+. |.+ ..+.+.++++-++++-. .+++.+|+.
T Consensus 413 ~~va~~L~~~g~~vvvID~d-~~~v~~~~~~-----------------g~~-v~~GDat~~~~L~~agi--~~A~~vv~~ 471 (601)
T PRK03659 413 QVIGRLLMANKMRITVLERD-ISAVNLMRKY-----------------GYK-VYYGDATQLELLRAAGA--EKAEAIVIT 471 (601)
T ss_pred HHHHHHHHhCCCCEEEEECC-HHHHHHHHhC-----------------CCe-EEEeeCCCHHHHHhcCC--ccCCEEEEE
Confidence 34444445678888887764 5555544432 221 35667777777666543 367888887
Q ss_pred CCCCeeeehhhhhh----cccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 140 LPDWQVIPAENIVA----SFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 140 ~~DW~iIPlENliA----~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
..|. -.|+.. +-...+.+|++.++|.++++.... .|+|-|+-.
T Consensus 472 ~~d~----~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~---~Ga~~vv~e 518 (601)
T PRK03659 472 CNEP----EDTMKIVELCQQHFPHLHILARARGRVEAHELLQ---AGVTQFSRE 518 (601)
T ss_pred eCCH----HHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHh---CCCCEEEcc
Confidence 7775 344322 222446699999999999987654 699988744
No 218
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=38.34 E-value=1.4e+02 Score=25.69 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=39.9
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (401)
..|.++++..-...-.+ .++..++. ....++... +..+......+++.|+++++.+|-++.++.....
T Consensus 44 ~~dlvild~~l~~~~g~-~~~~~i~~~~~~~~ii~lt-~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~ 113 (219)
T PRK10336 44 PYDAVILDLTLPGMDGR-DILREWREKGQREPVLILT-ARDALAERVEGLRLGADDYLCKPFALIEVAARLE 113 (219)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCcEEEEE-CCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHH
Confidence 46777875432221111 22333322 234455544 4455566678899999999999999887754433
No 219
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=38.23 E-value=38 Score=30.82 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCceeEEEec--CCceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 278 GPVHAYVLVP--GGKTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 278 GaVHaYv~~p--ggkT~YLS-EL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|-+.=+|..- |.-|+||. .|+.||+|.+-...|..... .-+.+|+++|=.
T Consensus 59 ~~l~~~vk~~~~G~~s~~l~~~~~~G~~v~i~gP~G~f~~~-----~~~~~~~vlIag 111 (231)
T cd06215 59 DSLSITVKRVPGGLVSNWLHDNLKVGDELWASGPAGEFTLI-----DHPADKLLLLSA 111 (231)
T ss_pred CcEEEEEEEcCCCcchHHHHhcCCCCCEEEEEcCcceeEeC-----CCCCCcEEEEec
Confidence 3355556554 66799996 79999999999888865221 112588888754
No 220
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=38.23 E-value=1e+02 Score=30.17 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=42.8
Q ss_pred cChhhhhhhccccC---CCCeEEEeCC-CC-eeeehhhhhhccc---CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 118 STPQELQQLQPADG---QAENIVIDLP-DW-QVIPAENIVASFQ---GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 118 ~~~e~~e~~~~~~~---~~~~vvv~~~-DW-~iIPlENliA~~q---~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
.+++|+...+.+.+ +.+.+-++.. .+ .-+|.|.+=+-.+ +..--+=..++|.++|+.++ +.|+|+|++-
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~---~aGAD~VVVG 208 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA---EAGADTIVTG 208 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH---HcCCCEEEEC
Confidence 35666555444433 3678888843 33 4466665422222 22333445788999988755 6699999998
Q ss_pred cC
Q 015764 190 VE 191 (401)
Q Consensus 190 ~~ 191 (401)
+-
T Consensus 209 s~ 210 (223)
T TIGR01768 209 NV 210 (223)
T ss_pred cH
Confidence 74
No 221
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.11 E-value=3.3e+02 Score=26.37 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=59.8
Q ss_pred chhHhHHHHHhCCcEEEEcCc---chhhHhhccce----eeeeeeeecCCccccCCCC-eeEEEE--Eec--Chhhhhhh
Q 015764 59 SKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTI----ALLDPLFIKEGEVYDSGDR-RVGSII--EVS--TPQELQQL 126 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i----~~i~~l~~~~g~~~~~~gk-~v~~~~--~v~--~~e~~e~~ 126 (401)
+-+-+...++.|++.+++... +.++.+++.+. ..+-.+-+.+|. .|. .+.... +.. ++.++-..
T Consensus 85 s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~----~~~~~v~~~gw~~~~~~~~~e~~~~ 160 (258)
T PRK01033 85 TLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNL----GGKFDVYTHNGTKKLKKDPLELAKE 160 (258)
T ss_pred CHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCC----CCcEEEEEcCCeecCCCCHHHHHHH
Confidence 556677788899999998763 34444444321 112222223330 111 111000 011 22222222
Q ss_pred ccccCCCCeEEEeCC---------CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 015764 127 QPADGQAENIVIDLP---------DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 127 ~~~~~~~~~vvv~~~---------DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
... ..++.+++... ||..| +.+.. ..+..|++. +.+.+|++.+++ +.|+|||++..
T Consensus 161 ~~~-~g~~~ii~~~i~~~G~~~G~d~~~i--~~~~~---~~~ipvIasGGv~s~eD~~~l~~--~~GvdgVivg~ 227 (258)
T PRK01033 161 YEA-LGAGEILLNSIDRDGTMKGYDLELL--KSFRN---ALKIPLIALGGAGSLDDIVEAIL--NLGADAAAAGS 227 (258)
T ss_pred HHH-cCCCEEEEEccCCCCCcCCCCHHHH--HHHHh---hCCCCEEEeCCCCCHHHHHHHHH--HCCCCEEEEcc
Confidence 222 23567777633 34443 22222 234456654 889999887764 45999998754
No 222
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=38.09 E-value=46 Score=32.71 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCcEEEEEe-CchhHhHHHHHhCCcEEEEcCc
Q 015764 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 49 ~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
....|++|| .+++.|...++-|+|+++.+..
T Consensus 260 ~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P 291 (300)
T cd08612 260 RGIQVYGWVLNDEEEFERAFELGADGVMTDYP 291 (300)
T ss_pred CCCEEEEeecCCHHHHHHHHhcCCCEEEeCCH
Confidence 566799999 5799999999999999998653
No 223
>PHA00440 host protein H-NS-interacting protein
Probab=38.08 E-value=19 Score=31.40 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEE
Q 015764 168 TPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRV 223 (401)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V 223 (401)
|+-+.+....+|-+|.||++--.---+--..+|+.... -.++..+...||||..+
T Consensus 43 ~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E-~~d~~~~k~sPATvRev 97 (98)
T PHA00440 43 NPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEE-STDKDLFKFSPATVREV 97 (98)
T ss_pred ChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHh-hccCcceeecCceEEec
Confidence 89999999999999999987322111111223333322 13455689999999875
No 224
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=37.62 E-value=3.6e+02 Score=25.51 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=49.6
Q ss_pred CCeeEEEEEecChhhhhhhccccCCCCeEEEeCC-----------CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHH
Q 015764 108 DRRVGSIIEVSTPQELQQLQPADGQAENIVIDLP-----------DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFL 176 (401)
Q Consensus 108 gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~-----------DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al 176 (401)
+.++--.+.+.+.+++..+......+|+++++.. ||++++ +.+ ...=++|.==+++-.+.++
T Consensus 100 ~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~-----~~~--~~p~~LAGGi~peNv~~ai 172 (210)
T PRK01222 100 GLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLP-----AGL--AKPWILAGGLNPDNVAEAI 172 (210)
T ss_pred CCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhh-----hcc--CCCEEEECCCCHHHHHHHH
Confidence 3455555667666666555444445789999853 687663 222 1234667666777776666
Q ss_pred HHhhcccCeEEEec--------CCHHHHHHHHHh
Q 015764 177 EALEQGLGGIVLKV--------EDVKAVLALKEY 202 (401)
Q Consensus 177 ~~LE~G~DGVvl~~--------~d~~ev~~l~~~ 202 (401)
.. .+.+||=+.+ .|++.++++.+.
T Consensus 173 ~~--~~p~gvDvsSgvE~~~G~KD~~ki~~f~~~ 204 (210)
T PRK01222 173 RQ--VRPYGVDVSSGVESAPGIKDPEKIRAFIEA 204 (210)
T ss_pred Hh--cCCCEEEecCceECCCCCcCHHHHHHHHHH
Confidence 53 3566665543 355555544433
No 225
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=37.33 E-value=90 Score=27.97 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEe
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVID 139 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~ 139 (401)
.+.+..|.+.|+|++++.....+...+.-+. ..+.|..++..+.-.++ ++.+.......+++.+.
T Consensus 70 ~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~-------------~~~~~~~~g~~~~~~~~--~~~~~~~~~~~d~i~~~ 134 (211)
T cd00429 70 ERYIEAFAKAGADIITFHAEATDHLHRTIQL-------------IKELGMKAGVALNPGTP--VEVLEPYLDEVDLVLVM 134 (211)
T ss_pred HHHHHHHHHcCCCEEEECccchhhHHHHHHH-------------HHHCCCeEEEEecCCCC--HHHHHHHHhhCCEEEEE
Q ss_pred CCC-------CeeeehhhhhhcccCCC----ceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 140 LPD-------WQVIPAENIVASFQGSG----KTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 140 ~~D-------W~iIPlENliA~~q~~~----~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
... |..-.++++-....... ..-+...--... +.+-++++.|+|||++
T Consensus 135 ~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iiv 193 (211)
T cd00429 135 SVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVA 193 (211)
T ss_pred EECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEE
No 226
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=37.30 E-value=42 Score=32.19 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=30.7
Q ss_pred cCC-ceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 287 PGG-KTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 287 pgg-kT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|+| -|+||.+|+.||+|.+-...|+... +-..+|++||=+
T Consensus 118 ~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l------~~~~~~~vlIAg 158 (283)
T cd06188 118 PPGIGSSYIFNLKPGDKVTASGPFGEFFI------KDTDREMVFIGG 158 (283)
T ss_pred CCceehhHHhcCCCCCEEEEECccccccc------cCCCCcEEEEEe
Confidence 444 4789999999999999999997632 124689998855
No 227
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.89 E-value=2.4e+02 Score=27.01 Aligned_cols=123 Identities=15% Similarity=0.030 Sum_probs=76.6
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCCeEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAENIV 137 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~~vv 137 (401)
-.+++.+.++.|+..+=++-.+..-.+.+..+..- .+.+ +-.+| -..|.++++.+.+... .++++|
T Consensus 27 a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~----------~~~~p~~~vG-aGTV~~~~~~~~a~~a--GA~Fiv 93 (213)
T PRK06552 27 ALKISLAVIKGGIKAIEVTYTNPFASEVIKELVEL----------YKDDPEVLIG-AGTVLDAVTARLAILA--GAQFIV 93 (213)
T ss_pred HHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHH----------cCCCCCeEEe-eeeCCCHHHHHHHHHc--CCCEEE
Confidence 36678888899999866654433222222222110 0000 12222 3579999997765543 567777
Q ss_pred EeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC---HHHHHHHHHhh
Q 015764 138 IDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED---VKAVLALKEYF 203 (401)
Q Consensus 138 v~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d---~~ev~~l~~~~ 203 (401)
--..+ +.++......+--++-.+.|++|+..+ ++.|+|-|-+-|.+ ++.++.++..+
T Consensus 94 sP~~~------~~v~~~~~~~~i~~iPG~~T~~E~~~A---~~~Gad~vklFPa~~~G~~~ik~l~~~~ 153 (213)
T PRK06552 94 SPSFN------RETAKICNLYQIPYLPGCMTVTEIVTA---LEAGSEIVKLFPGSTLGPSFIKAIKGPL 153 (213)
T ss_pred CCCCC------HHHHHHHHHcCCCEECCcCCHHHHHHH---HHcCCCEEEECCcccCCHHHHHHHhhhC
Confidence 43333 456666666677899999999999766 57999999996654 46666665544
No 228
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=36.72 E-value=16 Score=36.76 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=16.2
Q ss_pred eEEEeecCCCCCCceEEE
Q 015764 231 RVCVDLCSLMRPGEGLLV 248 (401)
Q Consensus 231 RVCVDtcsll~~GEGmLV 248 (401)
.||+|||.++..|.|+..
T Consensus 171 gvCiDtcH~~Aagy~~~~ 188 (280)
T COG0648 171 GVCIDTCHAFAAGYDIIT 188 (280)
T ss_pred EEEEEchhhhhccCCcCc
Confidence 489999999999999864
No 229
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=36.69 E-value=1.6e+02 Score=28.49 Aligned_cols=129 Identities=12% Similarity=-0.010 Sum_probs=64.7
Q ss_pred CchhHhHHHHHhCCcEEEEcCc---chhhHhhcccee--eeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC-
Q 015764 58 ESKQVMTAAVERGWNTFVFLSE---NQQLAIDWSTIA--LLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG- 131 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~---~~~~~~~~~~i~--~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~- 131 (401)
++.+-+...++.|++.+++... +.++.+++.+.- ++ .+.+|- .. ++++..++.-....+.-++..+...+.
T Consensus 84 rs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~i-vvslD~-k~-~g~~~~v~~~Gw~~~~~~~~~~~~~~~~ 160 (243)
T TIGR01919 84 RDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIV-AVGLDV-LE-DGEWHTLGNRGWSDGGGDLEVLERLLDS 160 (243)
T ss_pred CCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccE-EEEEEE-ec-CCceEEEECCCeecCCCcHHHHHHHHHh
Confidence 6899999999999999998753 345555554321 11 122221 00 111122221111112222233322221
Q ss_pred -CCCeEEEeCC--C-C-eeeehhhhhhccc-CCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 132 -QAENIVIDLP--D-W-QVIPAENIVASFQ-GSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 132 -~~~~vvv~~~--D-W-~iIPlENliA~~q-~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
.+..+|+..- | = +=+.+| ++.++. ..+..|++ .+++.+|-+.....-+.|+|||++-.
T Consensus 161 ~g~~~ii~tdI~~dGt~~G~d~~-l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~ 226 (243)
T TIGR01919 161 GGCSRVVVTDSKKDGLSGGPNEL-LLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGK 226 (243)
T ss_pred CCCCEEEEEecCCcccCCCcCHH-HHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhH
Confidence 2345555321 1 1 123333 222222 23446665 58999998876555578999999854
No 230
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.62 E-value=62 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=32.4
Q ss_pred hhhhhhcccCCCceEEEE-----cCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 015764 148 AENIVASFQGSGKTVFAI-----SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (401)
Q Consensus 148 lENliA~~q~~~~~l~a~-----v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~ 197 (401)
-+.+|..++..+-.+++- +++.++++.+ ++.|+|||+ ||.|+.+.
T Consensus 212 ~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l---~~~Gvdgii--TD~p~~~~ 261 (265)
T cd08564 212 TEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVY---LELGVDCIC--PNDPVLLV 261 (265)
T ss_pred hHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHH---HHcCCCEEE--cCCHHHHH
Confidence 367788888877777776 4666777665 477999976 77777543
No 231
>PRK09483 response regulator; Provisional
Probab=36.58 E-value=2.2e+02 Score=24.72 Aligned_cols=81 Identities=7% Similarity=0.112 Sum_probs=43.5
Q ss_pred ecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 015764 117 VSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (401)
Q Consensus 117 v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (401)
..+.++...... ....|.++++..-... .--.++..++ .....++..... .+......+++.|++|.+.+|.++.
T Consensus 33 ~~~~~~~~~~~~-~~~~dlvi~d~~~~~~-~g~~~~~~l~~~~~~~~ii~ls~~-~~~~~~~~~~~~g~~~~l~k~~~~~ 109 (217)
T PRK09483 33 ACCGEDAVKWCR-TNAVDVVLMDMNMPGI-GGLEATRKILRYTPDVKIIMLTVH-TENPLPAKVMQAGAAGYLSKGAAPQ 109 (217)
T ss_pred eCCHHHHHHHHH-hcCCCEEEEeCCCCCC-CHHHHHHHHHHHCCCCeEEEEeCC-CCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 455554333222 2346777774321111 1112333222 223455555433 4455567889999999999999887
Q ss_pred HHHHHH
Q 015764 195 AVLALK 200 (401)
Q Consensus 195 ev~~l~ 200 (401)
++.+.-
T Consensus 110 ~l~~~i 115 (217)
T PRK09483 110 EVVSAI 115 (217)
T ss_pred HHHHHH
Confidence 765443
No 232
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=36.53 E-value=1.8e+02 Score=26.64 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=37.8
Q ss_pred CCCCeeeecCCc-e----eEEEe-cCC-ceeeeee-ccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 269 ASRPFRVNAGPV-H----AYVLV-PGG-KTCYLSE-LKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 269 a~RPFRVNAGaV-H----aYv~~-pgg-kT~YLSE-L~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
..|||-+..-|. . =++.. |+| -|.||.. ++.||+|.+....|+... - .-..+|+++|=+
T Consensus 50 ~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l---~--~~~~~~~vliag 116 (236)
T cd06210 50 TRRSYSLANTPNWDGRLEFLIRLLPGGAFSTYLETRAKVGQRLNLRGPLGAFGL---R--ENGLRPRWFVAG 116 (236)
T ss_pred cceecccCCCCCCCCEEEEEEEEcCCCccchhhhhCcCCCCEEEEecCcceeee---c--CCCCccEEEEcc
Confidence 357777754442 1 12332 444 6899987 999999999999997521 1 123478887643
No 233
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=36.45 E-value=89 Score=29.94 Aligned_cols=127 Identities=14% Similarity=0.206 Sum_probs=68.3
Q ss_pred hhHhHHHHHhCCcEEEEcCcch-hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 60 KQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
...+..=.+.|+|.+.|..|.. +..+-+.. +++.|.+.|..+.-.+|- +.+...+...|.+++
T Consensus 71 ~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~--------------ik~~g~k~GlalnP~Tp~--~~i~~~l~~~D~vlv 134 (220)
T PRK08883 71 DRIIPDFAKAGASMITFHVEASEHVDRTLQL--------------IKEHGCQAGVVLNPATPL--HHLEYIMDKVDLILL 134 (220)
T ss_pred HHHHHHHHHhCCCEEEEcccCcccHHHHHHH--------------HHHcCCcEEEEeCCCCCH--HHHHHHHHhCCeEEE
Confidence 4456666788999999887621 11121111 234466777655554432 333344456787777
Q ss_pred -----eCCCCeeee--hh---hhhhcccCCC-ceEEEEcCCHHHHHHHHHHhhcccCeEEEe-----cCCH-HHHHHHHH
Q 015764 139 -----DLPDWQVIP--AE---NIVASFQGSG-KTVFAISKTPSEAQIFLEALEQGLGGIVLK-----VEDV-KAVLALKE 201 (401)
Q Consensus 139 -----~~~DW~iIP--lE---NliA~~q~~~-~~l~a~v~~~~eA~~al~~LE~G~DGVvl~-----~~d~-~ev~~l~~ 201 (401)
-+.+.+.|| +| .+-+..+..+ ...+.+-.... .+.+-.+.+.|+|++++- .+|+ +.++++++
T Consensus 135 MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~ 213 (220)
T PRK08883 135 MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213 (220)
T ss_pred EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 245777887 23 2323222211 12232333333 556668889999999764 3454 34444444
Q ss_pred hh
Q 015764 202 YF 203 (401)
Q Consensus 202 ~~ 203 (401)
.+
T Consensus 214 ~~ 215 (220)
T PRK08883 214 EL 215 (220)
T ss_pred HH
Confidence 43
No 234
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=36.24 E-value=2.1e+02 Score=25.89 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=34.0
Q ss_pred CCceeEEEe-c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEec-cceeEEEE
Q 015764 278 GPVHAYVLV-P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIES-RPLILVEA 332 (401)
Q Consensus 278 GaVHaYv~~-p-ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~-RPLlLVeA 332 (401)
|-+.=+|.. | |.-|+||..++.||+|.+-...|..... .-.. +|+++|=+
T Consensus 60 ~~~~~~v~~~~~G~~s~~l~~~~~G~~v~i~gP~G~~~~~-----~~~~~~~~vliag 112 (234)
T cd06183 60 GYFDLLIKIYPGGKMSQYLHSLKPGDTVEIRGPFGKFEYK-----PNGKVKHIGMIAG 112 (234)
T ss_pred CEEEEEEEECCCCcchhHHhcCCCCCEEEEECCccceeec-----CCCCccEEEEEcC
Confidence 445556665 4 5569999999999999998888864221 0112 77887743
No 235
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=36.09 E-value=50 Score=31.23 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=25.9
Q ss_pred ceeeeeec-cCCCeEEEEcCCC-CeeEEeeeeEEEeccceeEEEE
Q 015764 290 KTCYLSEL-KSGKEVIVVDQKG-RQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 290 kT~YLSEL-~sG~eVLvVd~~G-~tR~~~VGRvKIE~RPLlLVeA 332 (401)
-|.||.++ +.||+|.+.-..| .... -+ +.+|++||=+
T Consensus 79 ~S~~L~~~~~~Gd~v~i~gp~gg~F~~-----~~-~~~~~vlIAg 117 (245)
T cd06200 79 GSGWLTRHAPIGASVALRLRENPGFHL-----PD-DGRPLILIGN 117 (245)
T ss_pred echhhhhCCCCCCEEEEEecCCCcccC-----CC-CCCCEEEEec
Confidence 78999875 8999999987544 3321 12 4689998854
No 236
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=35.98 E-value=46 Score=34.06 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=31.1
Q ss_pred ec-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 286 VP-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 286 ~p-ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.| |.-|.||.+|+.||+|.+-...|+.-.. . +.||++||=+
T Consensus 237 ~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~-----~-~~~~lvlIAg 278 (405)
T TIGR01941 237 IPPGIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIGG 278 (405)
T ss_pred CCCCcHHHHHhcCCCcCEEEEEeccCCCeec-----C-CCCCEEEEec
Confidence 35 4457999999999999999999986321 1 3588888754
No 237
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=35.92 E-value=25 Score=32.41 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.2
Q ss_pred cCCCCEEEEEecCCC
Q 015764 373 LKVGDEVLLRVQGAA 387 (401)
Q Consensus 373 LK~GD~VL~~~~~~g 387 (401)
-+|||+|++|++.+|
T Consensus 128 a~~~DeV~~rLES~G 142 (155)
T PF08496_consen 128 ATPEDEVLVRLESPG 142 (155)
T ss_pred CCCCCeEEEEEecCC
Confidence 479999999999876
No 238
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=35.77 E-value=2.5e+02 Score=26.08 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=49.8
Q ss_pred eeecCCcccc-CCCCeeEEEEEecChhhhhhhccccCCCCeEEE-eCCCC-eee--ehhhhhhcc-cCCCc--eEEEEcC
Q 015764 96 LFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVI-DLPDW-QVI--PAENIVASF-QGSGK--TVFAISK 167 (401)
Q Consensus 96 l~~~~g~~~~-~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv-~~~DW-~iI--PlENliA~~-q~~~~--~l~a~v~ 167 (401)
|.+.+|..+. -+|+.-.....-.+|.++-......+ ++.+.+ +-... +-. .++. |+++ +.... .+=..++
T Consensus 5 id~~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g-~~~l~v~dl~~~~~g~~~~~~~-i~~i~~~~~~pi~~ggGI~ 82 (230)
T TIGR00007 5 IDIKDGKCVRLYQGDYDKETVYGDDPVEAAKKWEEEG-AERIHVVDLDGAKEGGPVNLPV-IKKIVRETGVPVQVGGGIR 82 (230)
T ss_pred EEeeCCEEEEeeccccCcceEecCCHHHHHHHHHHcC-CCEEEEEeCCccccCCCCcHHH-HHHHHHhcCCCEEEeCCcC
Confidence 4556676654 22322222222346666555443333 444444 33332 122 2332 2222 22222 2334778
Q ss_pred CHHHHHHHHHHhhcccCeEEEecC---CHHHHHHHH
Q 015764 168 TPSEAQIFLEALEQGLGGIVLKVE---DVKAVLALK 200 (401)
Q Consensus 168 ~~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l~ 200 (401)
+.++++.+++ .|+|.|++.+. |++.+.++.
T Consensus 83 ~~ed~~~~~~---~Ga~~vvlgs~~l~d~~~~~~~~ 115 (230)
T TIGR00007 83 SLEDVEKLLD---LGVDRVIIGTAAVENPDLVKELL 115 (230)
T ss_pred CHHHHHHHHH---cCCCEEEEChHHhhCHHHHHHHH
Confidence 8888887766 79999999864 454444433
No 239
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=35.68 E-value=2.4e+02 Score=26.03 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=37.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
+.+.+++... +.++++.++...+-.++..+.+.++++. +.+.|+|++++.+
T Consensus 80 g~d~v~l~~~-----~~~~~~~~~~~~~i~~i~~v~~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 80 GVPVVSFSFG-----PPAEVVERLKAAGIKVIPTVTSVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred CCCEEEEcCC-----CCHHHHHHHHHcCCEEEEeCCCHHHHHH---HHHcCCCEEEEeC
Confidence 5788887544 4466777766666788888888888765 4568999999854
No 240
>PRK15447 putative protease; Provisional
Probab=35.62 E-value=2.3e+02 Score=28.17 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred Ee-CchhHhHHHH-HhCCcEEEEcCcc---------hhhHhhccceeeeeeeeecCCccccCCCCeeEEEE-Ee-cChhh
Q 015764 56 WT-ESKQVMTAAV-ERGWNTFVFLSEN---------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSII-EV-STPQE 122 (401)
Q Consensus 56 w~-~~K~~vt~Al-EsG~~~~v~~~~~---------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~-~v-~~~e~ 122 (401)
|- .+.+-+-+|+ ++|+|+|.+..+. .++.+.+..+ .+.||++.... .| ..+++
T Consensus 12 ~p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~--------------~~~gkkvyva~p~i~~~~~e 77 (301)
T PRK15447 12 WPKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERL--------------AAAGKEVVLSTLALVEAPSE 77 (301)
T ss_pred CCCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHH--------------HHcCCEEEEEecccccCHHH
Q ss_pred hhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC-CHHHHHHHHH
Q 015764 123 LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE-DVKAVLALKE 201 (401)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~-d~~ev~~l~~ 201 (401)
++.+..........|+ ..||..+ .++..+ .-.-....--|.--...+-.-.+.|++.|+|..+ +..||+++.+
T Consensus 78 ~~~l~~~l~~~~~~v~-v~d~g~l---~~~~e~--~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELsl~eI~~i~~ 151 (301)
T PRK15447 78 LKELRRLVENGEFLVE-ANDLGAV---RLLAER--GLPFVAGPALNCYNAATLALLARLGATRWCMPVELSRDWLANLLA 151 (301)
T ss_pred HHHHHHHHhcCCCEEE-EeCHHHH---HHHHhc--CCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCCHHHHHHHHH
No 241
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.49 E-value=2.9e+02 Score=26.81 Aligned_cols=125 Identities=17% Similarity=0.069 Sum_probs=65.3
Q ss_pred CchhHhHHHHHhCCcEEEEcC---cchhhHhhcccee-eeeeeee--cCCccccCCCCeeEEEEEec--Chhhhhhhccc
Q 015764 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTIA-LLDPLFI--KEGEVYDSGDRRVGSIIEVS--TPQELQQLQPA 129 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i~-~i~~l~~--~~g~~~~~~gk~v~~~~~v~--~~e~~e~~~~~ 129 (401)
++.+-+...++.|++.+++.. ++.++.+++.+.+ ++ .+.+ .+|+++..... +-+ ++.++-.....
T Consensus 83 rs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~i-vvslD~k~g~v~~~gw~------~~~~~~~~e~~~~~~~ 155 (241)
T PRK14114 83 RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEP-VFSLDTRGGKVAFKGWL------AEEEIDPVSLLKRLKE 155 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCE-EEEEEccCCEEeeCCCe------ecCCCCHHHHHHHHHh
Confidence 578999999999999999886 4566666664332 11 2223 33332211110 111 22222111122
Q ss_pred cCCCCeEEEeC--CC--CeeeehhhhhhcccCCCceEEE--EcCCHHHHHHHHHH--hhcc-cCeEEEec
Q 015764 130 DGQAENIVIDL--PD--WQVIPAENIVASFQGSGKTVFA--ISKTPSEAQIFLEA--LEQG-LGGIVLKV 190 (401)
Q Consensus 130 ~~~~~~vvv~~--~D--W~iIPlENliA~~q~~~~~l~a--~v~~~~eA~~al~~--LE~G-~DGVvl~~ 190 (401)
. .+..+|+.. +| .+=+.+|.+-.-.+..+..|+| .+.+.+|-+.+... +..| ++|+++-.
T Consensus 156 ~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~ 224 (241)
T PRK14114 156 Y-GLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGR 224 (241)
T ss_pred c-CCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEeh
Confidence 2 245555532 11 2223444332222223446665 58999998877653 2457 99999864
No 242
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=35.47 E-value=1.7e+02 Score=30.34 Aligned_cols=49 Identities=27% Similarity=0.294 Sum_probs=39.5
Q ss_pred eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 281 HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 281 HaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
+...+.|+||+-|.+-+..-..|.+||..-+ .+++.+.+-..++++.-.
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~---kvv~ei~vp~~~~vy~t~ 156 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK---AFVRMMDVPDCYHIFPTA 156 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCC---cEEEEEeCCCCcEEEEec
Confidence 5677889999999999999999999998554 356677776777777753
No 243
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=35.42 E-value=1.8e+02 Score=26.72 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=39.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..|.++++..-+..=-+ .++..++. ....++..... .+......+++.|++|.+.+|.+++++.+.
T Consensus 49 ~~DlvilD~~~p~~~G~-eli~~l~~~~~~~~vI~ls~~-~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~ 116 (239)
T PRK10430 49 PIDLILLDIYMQQENGL-DLLPVLHEAGCKSDVIVISSA-ADAATIKDSLHYGVVDYLIKPFQASRFEEA 116 (239)
T ss_pred CCCEEEEecCCCCCCcH-HHHHHHHhhCCCCCEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Confidence 46777775432221111 23333332 23455555443 344556789999999999999998877543
No 244
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=35.34 E-value=1.5e+02 Score=25.77 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=40.0
Q ss_pred CCCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 131 GQAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 131 ~~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
...+.++++..-+..-.+ .++..++. ....++... +..+......+++.|+|+.+.+|-++.++.+.-
T Consensus 43 ~~~dlvi~d~~~~~~~g~-~~~~~l~~~~~~~ii~ls-~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i 111 (223)
T PRK11517 43 DDYALIILDIMLPGMDGW-QILQTLRTAKQTPVICLT-ARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 (223)
T ss_pred CCCCEEEEECCCCCCCHH-HHHHHHHcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence 346778775432221111 22222221 134455544 344556678999999999999999988775443
No 245
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=35.28 E-value=2.2e+02 Score=27.60 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=65.2
Q ss_pred hHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 015764 61 QVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 61 ~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv 138 (401)
.+..+|.+.|+.++=... +|...+++.-++-.|..+ + ...+..+ +| |+ +-++.+++.. ..++.+-+
T Consensus 3 ~mA~Aa~~gGA~giR~~~~~dI~aik~~v~lPIIGi~--K--~~y~~~~----V~--ITPT~~ev~~l~~--aGadIIAl 70 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRANGVEDIRAIKKAVDLPIIGII--K--RDYPDSD----VY--ITPTLKEVDALAE--AGADIIAL 70 (192)
T ss_dssp HHHHHHHHCT-SEEEEESHHHHHHHHTTB-S-EEEE---B---SBTTSS--------BS-SHHHHHHHHH--CT-SEEEE
T ss_pred HHHHHHHHCCceEEEcCCHHHHHHHHHhcCCCEEEEE--e--ccCCCCC----eE--ECCCHHHHHHHHH--cCCCEEEE
Confidence 356789999999987764 333334444444333321 1 0111111 22 44 5666666654 46888889
Q ss_pred eCCC-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 015764 139 DLPD-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (401)
Q Consensus 139 ~~~D-W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (401)
++++ ..=-+++.++.+++....-+.|-+++.|||+.+ .+.|+|=|=
T Consensus 71 DaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A---~~~G~D~I~ 117 (192)
T PF04131_consen 71 DATDRPRPETLEELIREIKEKYQLVMADISTLEEAINA---AELGFDIIG 117 (192)
T ss_dssp E-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHH---HHTT-SEEE
T ss_pred ecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHH---HHcCCCEEE
Confidence 8752 222889999999988887899999999998764 578998654
No 246
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=35.11 E-value=34 Score=34.39 Aligned_cols=39 Identities=31% Similarity=0.296 Sum_probs=26.7
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
|+.|++++ +-..-+=|...++++| ..+||.|+|+|++.|
T Consensus 174 l~iiie~a-~VPviVDAGiG~pSdA---a~aMElG~DaVL~NT 212 (262)
T COG2022 174 LEIIIEEA-DVPVIVDAGIGTPSDA---AQAMELGADAVLLNT 212 (262)
T ss_pred HHHHHHhC-CCCEEEeCCCCChhHH---HHHHhcccceeehhh
Confidence 45566665 2233344566788876 567899999999986
No 247
>CHL00148 orf27 Ycf27; Reviewed
Probab=35.04 E-value=1.2e+02 Score=26.68 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=28.6
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
...++..... .+......+++.|+++++.+|-++.++.+.
T Consensus 77 ~~~ii~ls~~-~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~ 116 (240)
T CHL00148 77 DVPIIMLTAL-GDVSDRITGLELGADDYVVKPFSPKELEAR 116 (240)
T ss_pred CCcEEEEECC-CCHHhHHHHHHCCCCEEEeCCCCHHHHHHH
Confidence 3455554433 444556788999999999999999877543
No 248
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=35.01 E-value=1.7e+02 Score=26.68 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=39.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..|.++++..-+..=-+ .++..+.. ....++.... .++......+++.|++|.+.+|-+++++.+.
T Consensus 50 ~pdlvllD~~mp~~~gl-e~~~~l~~~~~~~~iivls~-~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~ 117 (225)
T PRK10046 50 KPGLILLDNYLPDGRGI-NLLHELVQAHYPGDVVFTTA-ASDMETVSEAVRCGVFDYLIKPIAYERLGQT 117 (225)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCccEEEECCcCHHHHHHH
Confidence 46777775432221111 23333322 2345555443 3445677889999999999999998877543
No 249
>PRK13856 two-component response regulator VirG; Provisional
Probab=34.93 E-value=2.6e+02 Score=25.25 Aligned_cols=67 Identities=25% Similarity=0.182 Sum_probs=38.3
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..+.++++..-...=.+ .++..+.. ....++.......+......+++.|+|+++.+|-++.++.+.
T Consensus 45 ~~dlvi~d~~l~~~~g~-~l~~~i~~~~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~ 112 (241)
T PRK13856 45 TVDVVVVDLNLGREDGL-EIVRSLATKSDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLAR 112 (241)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhcCCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHH
Confidence 45777774322221111 23333322 234455555433344445688999999999999999887543
No 250
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=34.83 E-value=95 Score=30.73 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
..|..++.|.+||..+ ++.|+|.|.|.+=+|.+++++.+.+
T Consensus 184 ~~IgVev~t~eea~~A---~~~gaD~I~ld~~~p~~l~~~~~~~ 224 (272)
T cd01573 184 KKIVVEVDSLEEALAA---AEAGADILQLDKFSPEELAELVPKL 224 (272)
T ss_pred CeEEEEcCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHHH
Confidence 4688999999998775 4799999999999998887666654
No 251
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=34.82 E-value=13 Score=37.17 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=12.0
Q ss_pred eEEEeecCCCCCCc
Q 015764 231 RVCVDLCSLMRPGE 244 (401)
Q Consensus 231 RVCVDtcsll~~GE 244 (401)
+||+|||..+..|=
T Consensus 175 gVClDTCH~FaaGy 188 (281)
T KOG3997|consen 175 GVCLDTCHTFAAGY 188 (281)
T ss_pred eeeHhhhhhhcccc
Confidence 59999999998763
No 252
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=34.74 E-value=46 Score=30.67 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.3
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEc
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFL 77 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~ 77 (401)
...+.|++|+ .+++.+..+++.|+|+|+.+
T Consensus 188 ~~G~~v~~wtvn~~~~~~~~~~~Gvd~i~TD 218 (220)
T cd08579 188 QNGKKVYVWTVNDPDDMQRYLAMGVDGIITD 218 (220)
T ss_pred HCCCEEEEEcCCCHHHHHHHHHcCCCEEeCC
Confidence 4567899999 57999999999999998754
No 253
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=34.74 E-value=76 Score=21.21 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=26.3
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 015764 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (401)
Q Consensus 287 pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (401)
|+|+.-|.+.- .++.|.++|.... .+++++++-..|-
T Consensus 1 pd~~~lyv~~~-~~~~v~~id~~~~---~~~~~i~vg~~P~ 37 (42)
T TIGR02276 1 PDGTKLYVTNS-GSNTVSVIDTATN---KVIATIPVGGYPF 37 (42)
T ss_pred CCCCEEEEEeC-CCCEEEEEECCCC---eEEEEEECCCCCc
Confidence 67888888774 4678888997432 4667787766664
No 254
>PRK08187 pyruvate kinase; Validated
Probab=34.70 E-value=1.5e+02 Score=32.14 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=74.2
Q ss_pred eCchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC---
Q 015764 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ--- 132 (401)
Q Consensus 57 ~~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~--- 132 (401)
+.+++-+..+++ ++|.|.++. ++++.+..+..+-. ..++ ..++.++++.+|.+++-++.+..-...
T Consensus 312 ekD~~DL~f~~~-~vD~I~lSfV~saeDV~~l~~~L~-----~~~~----~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~ 381 (493)
T PRK08187 312 EKDRADLDFVAR-HADLVGYSFVQSPGDVEALQAALA-----ARRP----DDWRKLGLVLKIETPRAVANLPELIVQAAG 381 (493)
T ss_pred HhHHHHHHHHHh-cCCEEEECCCCCHHHHHHHHHHHH-----HhCC----CCCCCCeEEEEECCHHHHHHHHHHHHHhCc
Confidence 345777888888 799988875 33444443333200 0000 002356678889998888776655422
Q ss_pred --CCeEEEeCCC------Ceeeeh--hhhhhcccCCCceEEE-----------EcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 133 --AENIVIDLPD------WQVIPA--ENIVASFQGSGKTVFA-----------ISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 133 --~~~vvv~~~D------W~iIPl--ENliA~~q~~~~~l~a-----------~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
..-+++-..| ++-.|. +.||.+....+.-+|. ...|-.|+--++.+ .|+|+|+|...
T Consensus 382 ~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs~G 459 (493)
T PRK08187 382 RQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLNKG 459 (493)
T ss_pred CCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeecCC
Confidence 2366664444 333332 2233333333323332 12233444444443 89999999955
Q ss_pred C--HHHHHHHHHhhcc
Q 015764 192 D--VKAVLALKEYFDG 205 (401)
Q Consensus 192 d--~~ev~~l~~~~~~ 205 (401)
. .+.|+-|.+++.+
T Consensus 460 ~ypveaV~~l~~I~~~ 475 (493)
T PRK08187 460 PYLVEAVTFLDDLLAR 475 (493)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4 4677777777644
No 255
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=34.50 E-value=2.6e+02 Score=25.88 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=23.4
Q ss_pred EEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 015764 162 VFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (401)
Q Consensus 162 l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (401)
+-..+++.++++.++. .|+|+|++.+.-..
T Consensus 79 ~~GGI~~~ed~~~~~~---~Ga~~vilg~~~l~ 108 (233)
T PRK00748 79 VGGGIRSLETVEALLD---AGVSRVIIGTAAVK 108 (233)
T ss_pred EcCCcCCHHHHHHHHH---cCCCEEEECchHHh
Confidence 3447899999987766 59999999986443
No 256
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=34.14 E-value=73 Score=28.81 Aligned_cols=36 Identities=33% Similarity=0.317 Sum_probs=24.7
Q ss_pred eeEEEecCCceeeee--eccCCCeEEEEcCCCCeeEEeee
Q 015764 281 HAYVLVPGGKTCYLS--ELKSGKEVIVVDQKGRQRTAVVG 318 (401)
Q Consensus 281 HaYv~~pggkT~YLS--EL~sG~eVLvVd~~G~tR~~~VG 318 (401)
|.++..-|..-++.+ ++.+||+|.+|+.+|.+ ..|-
T Consensus 101 ~g~Vkv~g~~Wra~~~~~l~~G~~V~Vv~v~G~~--L~V~ 138 (140)
T COG1585 101 RGRVKVEGESWRARSDEDLPAGDRVEVVGVEGAT--LVVR 138 (140)
T ss_pred eEEEEECCeEeEEecCCCCCCCCEEEEEEeeCCE--EEEE
Confidence 345555455544444 78899999999999984 4443
No 257
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=34.10 E-value=2e+02 Score=30.50 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=81.3
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
..+.+.+-++.|++.++++..|......+..+..+..-+ .+..+ ....+.+.++...+... .++.+.+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~---------p~~~v-i~g~v~t~e~a~~l~~a--Gad~i~v 296 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKY---------PDVQI-IAGNVATAEAARALIEA--GADAVKV 296 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhC---------CCCCE-EEeccCCHHHHHHHHHc--CCCEEEE
Confidence 468888889999998887754322222222222221100 01222 22568888886666542 5677755
Q ss_pred e-----------CCCCeeeehhhh---hhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 015764 139 D-----------LPDWQVIPAENI---VASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (401)
Q Consensus 139 ~-----------~~DW~iIPlENl---iA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (401)
- ..+|-+=.++-| ..+++..+..|+| .+.+..|+..| |..|+|.|++-+-
T Consensus 297 g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kA---la~GA~~v~~G~~----------- 362 (486)
T PRK05567 297 GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKA---LAAGASAVMLGSM----------- 362 (486)
T ss_pred CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHH---HHhCCCEEEECcc-----------
Confidence 1 135543333333 3333344678999 89999988665 5579999997643
Q ss_pred hcccccccceeeeeEEEEEEEEEcCCcceE
Q 015764 203 FDGRNEVSNLLSLMKATVTRVDVAGMGDRV 232 (401)
Q Consensus 203 ~~~~~~~~~~l~L~~atVt~V~~vGmGDRV 232 (401)
+....++.+.+-....+--+ .--|||-.-
T Consensus 363 ~a~~~e~pg~~~~~~g~~~k-~y~gm~s~~ 391 (486)
T PRK05567 363 LAGTEEAPGEVELYQGRSYK-SYRGMGSLG 391 (486)
T ss_pred ccccccCCCceEEECCEEEE-EEeccchHH
Confidence 43334444444333322222 244887543
No 258
>COG0684 MenG Demethylmenaquinone methyltransferase [Coenzyme metabolism]
Probab=34.03 E-value=29 Score=33.64 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=25.1
Q ss_pred eeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 015764 293 YLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (401)
Q Consensus 293 YLSEL~sG~eVLvVd~~G~tR~~~VGRv 320 (401)
+|++-..|| ||++|..|..+.+.+|-.
T Consensus 64 al~~~~~Gd-VLVid~~g~~~~A~~Gd~ 90 (210)
T COG0684 64 ALEQAGPGD-VLVIDGGGDLRRALWGDL 90 (210)
T ss_pred eeecCCCCC-EEEEeCCCCcceeehHHH
Confidence 899999999 999999999999999964
No 259
>PRK13794 hypothetical protein; Provisional
Probab=33.86 E-value=52 Score=35.07 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=35.1
Q ss_pred eeeecCCc-----eeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecc
Q 015764 273 FRVNAGPV-----HAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESR 325 (401)
Q Consensus 273 FRVNAGaV-----HaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~R 325 (401)
-.|+.|++ +-.-.++-|-+.-=.+++.||+|+|++.+|+ ..-||++++-..
T Consensus 127 V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv~~~g~--~iavG~a~~s~~ 182 (479)
T PRK13794 127 IVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIILDENGD--VVGVGRARMSYE 182 (479)
T ss_pred EEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEEcCCCc--EEEEEEeecCHH
Confidence 45666765 2223334445555567899999999999986 588899886443
No 260
>PRK14560 putative RNA-binding protein; Provisional
Probab=33.83 E-value=69 Score=29.00 Aligned_cols=53 Identities=30% Similarity=0.483 Sum_probs=38.5
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 015764 273 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (401)
Q Consensus 273 FRVNAGaVH-----aYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (401)
+-|+.|++. |-+++|| =+.+=.+++.||.|.|++.+ +....-||++++-..-|
T Consensus 79 v~Vd~~a~~~i~~Ga~lm~pG-V~~~~~~~~~Gd~V~I~~~~-~~~~vavG~~~~s~~ei 136 (160)
T PRK14560 79 VVVDAGAVKFVSNGADVMAPG-IVEADEDIKEGDIVFVVEET-HGKPLAVGRALMDGDEM 136 (160)
T ss_pred EEEeccHHHHHHCCCceecCe-eeeCCCCCCCCCEEEEEECC-CCeEEEEEEEeeCHHHH
Confidence 778888775 4555554 34555689999999999976 23558999999877654
No 261
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=33.81 E-value=19 Score=35.57 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=18.7
Q ss_pred CchhHhHHHHHhCCcEEEEcCcc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSEN 80 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~ 80 (401)
+..+++..|-+.|+..+++...+
T Consensus 18 d~~~vi~~a~~~gv~~~~~~g~~ 40 (256)
T COG0084 18 DRDEVIARAREAGVKKMVVVGTD 40 (256)
T ss_pred CHHHHHHHHHHcCCcEEEEeecC
Confidence 45778999999999998887654
No 262
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=33.63 E-value=1.7e+02 Score=29.31 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred hHhHHHHHhCCcEEEEcCcc--hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 61 QVMTAAVERGWNTFVFLSEN--QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 61 ~~vt~AlEsG~~~~v~~~~~--~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
+.+..+++.+++.+.+.-.. .+.++.+..- |. .++..+++.++...+.. ..+|.+|+
T Consensus 104 ~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~~-----------------gi--~v~~~v~s~~~A~~a~~--~G~D~iv~ 162 (330)
T PF03060_consen 104 EQLDVALEAKPDVVSFGFGLPPPEVIERLHAA-----------------GI--KVIPQVTSVREARKAAK--AGADAIVA 162 (330)
T ss_dssp HHHHHHHHS--SEEEEESSSC-HHHHHHHHHT-----------------T---EEEEEESSHHHHHHHHH--TT-SEEEE
T ss_pred cccccccccceEEEEeecccchHHHHHHHHHc-----------------CC--ccccccCCHHHHHHhhh--cCCCEEEE
Confidence 34555556666677775432 2333333222 32 35568999998665443 25899998
Q ss_pred eCC------CC---eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 139 DLP------DW---QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 139 ~~~------DW---~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
.+. +. ....|...+.+.- +.-|++ +--.-+.+-+..+|..|+|||.+-|.
T Consensus 163 qG~eAGGH~g~~~~~~~~L~~~v~~~~--~iPVia-AGGI~dg~~iaaal~lGA~gV~~GTr 221 (330)
T PF03060_consen 163 QGPEAGGHRGFEVGSTFSLLPQVRDAV--DIPVIA-AGGIADGRGIAAALALGADGVQMGTR 221 (330)
T ss_dssp E-TTSSEE---SSG-HHHHHHHHHHH---SS-EEE-ESS--SHHHHHHHHHCT-SEEEESHH
T ss_pred eccccCCCCCccccceeeHHHHHhhhc--CCcEEE-ecCcCCHHHHHHHHHcCCCEeecCCe
Confidence 753 21 2344444455433 234555 66777788888999999999998653
No 263
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.32 E-value=1.1e+02 Score=27.69 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=55.7
Q ss_pred hhHhHHHHHhCCcEEEEcCcc---hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 60 KQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
.+.+..++++|++.|.++..+ .+..+.+.++..+ .+.-|.. .+ +. ++.+.+.. . +++.+
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~----------~~~~~~~--l~--~~--~~~~~a~~-~-gad~v 85 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKEL----------CRRYGVP--LI--VN--DRVDLALA-V-GADGV 85 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHH----------HHHhCCe--EE--Ee--ChHHHHHH-c-CCCEE
Confidence 467889999999999886432 2222222222111 0111211 11 22 33333322 2 45666
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
.+...+ .|.+ .+..+.+....+-..++|.+|++. +.+.|+|-|.+.
T Consensus 86 h~~~~~---~~~~-~~~~~~~~~~~~g~~~~t~~e~~~---a~~~gaD~v~~~ 131 (212)
T PRK00043 86 HLGQDD---LPVA-DARALLGPDAIIGLSTHTLEEAAA---ALAAGADYVGVG 131 (212)
T ss_pred ecCccc---CCHH-HHHHHcCCCCEEEEeCCCHHHHHH---HhHcCCCEEEEC
Confidence 664433 2333 233444455567778888888654 457899999874
No 264
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=33.27 E-value=82 Score=27.80 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.8
Q ss_pred EEEEEecCCCCeEEEEEeEe
Q 015764 329 LVEAKTNSGDQTLYGIILQN 348 (401)
Q Consensus 329 LVeAe~~~~~G~~~sviLQn 348 (401)
.+|++.+.+-|....+||||
T Consensus 5 VlEvk~~~G~G~t~dvIl~~ 24 (110)
T cd03703 5 VLEVKEEEGLGTTIDVILYD 24 (110)
T ss_pred EEEEEEcCCCceEEEEEEEC
Confidence 57888876678889999997
No 265
>cd07896 Adenylation_kDNA_ligase_like Adenylation domain of kDNA ligases and similar proteins. The mitochondrial DNA of parasitic protozoans is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligonucleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most me
Probab=33.24 E-value=96 Score=27.71 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=22.8
Q ss_pred EcCCHHHHHHHH-HHhhcccCeEEEecCC
Q 015764 165 ISKTPSEAQIFL-EALEQGLGGIVLKVED 192 (401)
Q Consensus 165 ~v~~~~eA~~al-~~LE~G~DGVvl~~~d 192 (401)
.+.|.++++.++ .+++.|-+|+|++..|
T Consensus 130 ~~~~~~~i~~~~~~~~~~g~EGlv~K~~d 158 (174)
T cd07896 130 PVKSNEALDQYLDEVVAAGGEGLMLRRPD 158 (174)
T ss_pred eeCCHHHHHHHHHHHHhcCCCeEEEecCC
Confidence 356788888777 7889999999999765
No 266
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=33.01 E-value=1.2e+02 Score=26.45 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred EeCchhHhHHHHHhCCcEEEEcCcc--------hhhHhhccceeeeeeeeecCCccccC--CCCeeEEEEEec---Chhh
Q 015764 56 WTESKQVMTAAVERGWNTFVFLSEN--------QQLAIDWSTIALLDPLFIKEGEVYDS--GDRRVGSIIEVS---TPQE 122 (401)
Q Consensus 56 w~~~K~~vt~AlEsG~~~~v~~~~~--------~~~~~~~~~i~~i~~l~~~~g~~~~~--~gk~v~~~~~v~---~~e~ 122 (401)
+.+..+.+..|.+.|+|++++.... .+..+.+..+ .+. .+.++-.|.... +++.
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i-------------~~~~~~~~pv~iy~~p~~~~~~~~ 130 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAV-------------VEAADGGLPLKVILETRGLKTADE 130 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHH-------------HHHhcCCceEEEEEECCCCCCHHH
Q ss_pred hhhhccccCCCCeEEEeCCCC------eeeehhhhhhccc-CCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 123 LQQLQPADGQAENIVIDLPDW------QVIPAENIVASFQ-GSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~DW------~iIPlENliA~~q-~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
+..++..........+...-- .+--+..++..+. +.+-.+....++++.+.-++.. |++|+++
T Consensus 131 ~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~---Ga~g~~~ 200 (201)
T cd00945 131 IAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEA---GADGIGT 200 (201)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHh---ccceeec
No 267
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=32.97 E-value=45 Score=33.83 Aligned_cols=41 Identities=34% Similarity=0.521 Sum_probs=27.2
Q ss_pred cCCceeeeeeccCCCeEEE-E-cCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 287 PGGKTCYLSELKSGKEVIV-V-DQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 287 pggkT~YLSEL~sG~eVLv-V-d~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|--|.||++|+.||+|.+ + ...|.-+.- .-..+|+++|=+
T Consensus 196 ~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l~-----~~~~~piImIa~ 238 (384)
T cd06206 196 RGVASSYLSSLRPGDSIHVSVRPSHSAFRPP-----SDPSTPLIMIAA 238 (384)
T ss_pred eeehHHHHhhCCCCCeEEEEEecCCCccCCC-----CCCCCCEEEEeC
Confidence 3557899999999999987 3 344543210 013589988864
No 268
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=32.75 E-value=54 Score=33.56 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=30.5
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|.-|.||.+|+.||+|.+-...|+.-.. . ..+|++||=+
T Consensus 244 G~~S~~L~~l~~Gd~v~v~gP~G~f~~~-----~-~~~~ivlIAg 282 (409)
T PRK05464 244 GIMSSYIFSLKPGDKVTISGPFGEFFAK-----D-TDAEMVFIGG 282 (409)
T ss_pred CchhhHHHhCCCCCEEEEEccccCcEec-----C-CCceEEEEEe
Confidence 4558899999999999999999987321 1 4688888854
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=32.67 E-value=5.4e+02 Score=26.69 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=46.1
Q ss_pred CeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCe-EEEEEeEecc
Q 015764 272 PFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQT-LYGIILQNAE 350 (401)
Q Consensus 272 PFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~-~~sviLQnAE 350 (401)
|+++++..=+.||+|=+ +. +=+-+..|++|-++|..-+. .+.|++++.+|.=+. . +.||+ .+=+.-+.+.
T Consensus 252 ~ia~~~dg~~lyV~~~~-~~-~~thk~~~~~V~ViD~~t~k---vi~~i~vG~~~~~ia-v---S~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQ-RA-KWTHKTASRFLFVVDAKTGK---RLRKIELGHEIDSIN-V---SQDAKPLLYALSTGDK 322 (352)
T ss_pred eEEEcCCCCEEEEEecC-Cc-cccccCCCCEEEEEECCCCe---EEEEEeCCCceeeEE-E---CCCCCeEEEEeCCCCC
Confidence 46666666666664421 11 12335577999999985554 456888888875443 2 22667 5444445556
Q ss_pred eEEEecCC
Q 015764 351 TVALVSPC 358 (401)
Q Consensus 351 TIRLv~p~ 358 (401)
+|-++...
T Consensus 323 ~VsViD~~ 330 (352)
T TIGR02658 323 TLYIFDAE 330 (352)
T ss_pred cEEEEECc
Confidence 66666554
No 270
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=32.51 E-value=45 Score=32.07 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=64.3
Q ss_pred EEEEEEEEEcCCcc-eEEEeecCC---CCCCceEEEeccCceEEEEeeccccCCC-CCCCCeeeecCCceeEEEecCCce
Q 015764 217 KATVTRVDVAGMGD-RVCVDLCSL---MRPGEGLLVGSFARGLFLVHSECLESNY-IASRPFRVNAGPVHAYVLVPGGKT 291 (401)
Q Consensus 217 ~atVt~V~~vGmGD-RVCVDtcsl---l~~GEGmLVGS~s~glFLVhsEt~es~Y-va~RPFRVNAGaVHaYv~~pggkT 291 (401)
..+|++++.+-... +..+..=.. +.||+ ++.|.-.+-.+.|| +++-|.+-+-...|=.+..-|-.|
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQ---------fv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T 79 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQ---------FVMLRVPGGVRRPYSLASAPDDKGELELHIRVYEVGKVT 79 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCc---------EEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEEeCChHH
Confidence 47777777764332 344544443 67776 44444444445555 445554422225566666677789
Q ss_pred eeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 015764 292 CYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 292 ~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
+|+++|+.||.|-+...-|+.-... + -.+|+++|=+-
T Consensus 80 ~~i~~~k~gd~i~v~GP~G~~~~~~----~-~~~~vlliagG 116 (252)
T COG0543 80 KYIFGLKEGDKIRVRGPLGNGFLRE----K-IGKPVLLIAGG 116 (252)
T ss_pred HHHhhccCCCEEEEEcCCCCCcccc----c-cCCcEEEEecc
Confidence 9999999999999999999875442 1 24456666543
No 271
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=32.40 E-value=4e+02 Score=24.44 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=57.8
Q ss_pred EEEEEEEEEcCCcce-EEEeec------CCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCC----ceeEEE
Q 015764 217 KATVTRVDVAGMGDR-VCVDLC------SLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGP----VHAYVL 285 (401)
Q Consensus 217 ~atVt~V~~vGmGDR-VCVDtc------sll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGa----VHaYv~ 285 (401)
.++|++++++.-+-+ +++..- .-+.||+=+.|.-.. + .+ -.+|||-+-..| ++=++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~--------~---g~-~~~r~ysi~s~~~~~~l~~~i~ 70 (241)
T cd06214 3 PLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPI--------D---GE-EVRRSYSICSSPGDDELRITVK 70 (241)
T ss_pred eEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeec--------C---CC-eeeeeeeecCCCCCCcEEEEEE
Confidence 467888888864443 344431 135566544432110 1 11 124777765443 444454
Q ss_pred e-cCC-ceeeee-eccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 015764 286 V-PGG-KTCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 334 (401)
Q Consensus 286 ~-pgg-kT~YLS-EL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~ 334 (401)
. ++| -|.||. .++.||+|.+....|+-....-. ..+|+++|=+-.
T Consensus 71 ~~~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~----~~~~~llia~Gt 118 (241)
T cd06214 71 RVPGGRFSNWANDELKAGDTLEVMPPAGRFTLPPLP----GARHYVLFAAGS 118 (241)
T ss_pred EcCCCccchhHHhccCCCCEEEEeCCccccccCCCC----CCCcEEEEeccc
Confidence 3 444 589996 89999999998887755222110 257888775433
No 272
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=32.29 E-value=1.7e+02 Score=29.48 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=55.7
Q ss_pred CchhHhHHHHHhCCcEEEEcCcch-hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhcccc-CCCCe
Q 015764 58 ESKQVMTAAVERGWNTFVFLSENQ-QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPAD-GQAEN 135 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~-~~~~~ 135 (401)
.+.+++.+.-+.|.=+++...... ++.+.+.++.. ...++..+.. ++++.+.+.... ...+.
T Consensus 46 t~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk~---------------~l~v~~~~~~-~~~~~~~~~~l~eagv~~ 109 (325)
T cd00381 46 TESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKG---------------RLLVGAAVGT-REDDKERAEALVEAGVDV 109 (325)
T ss_pred CcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhcc---------------CceEEEecCC-ChhHHHHHHHHHhcCCCE
Confidence 456666666677777777654322 22333322210 0112222112 344445544433 35788
Q ss_pred EEEeCC-CCeeeehhhhhhcccCCC--ceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 015764 136 IVIDLP-DWQVIPAENIVASFQGSG--KTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 136 vvv~~~-DW~iIPlENliA~~q~~~--~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
+++++. ... -.+.++|.++.... ..|++ .+.+.++|+ .+++.|+|+|++
T Consensus 110 I~vd~~~G~~-~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~---~l~~aGaD~I~v 162 (325)
T cd00381 110 IVIDSAHGHS-VYVIEMIKFIKKKYPNVDVIAGNVVTAEAAR---DLIDAGADGVKV 162 (325)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHHCCCceEEECCCCCHHHHH---HHHhcCCCEEEE
Confidence 888753 222 12344555544332 34554 556666655 456789999997
No 273
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=32.28 E-value=2.8e+02 Score=22.63 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=67.2
Q ss_pred cEEEEEeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecC-hhhhhhhccc
Q 015764 51 KRVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVST-PQELQQLQPA 129 (401)
Q Consensus 51 K~vWiw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~-~e~~e~~~~~ 129 (401)
.++++=+.+.+-...|.+.|++.++...+ .+..+++.++. + +..+-..++..+ ++.++.....
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-~~~~~~i~~~~-------------~--~~~~d~vid~~g~~~~~~~~~~~ 78 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSD-DDFVEQIRELT-------------G--GRGVDVVIDCVGSGDTLQEAIKL 78 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTT-SSHHHHHHHHT-------------T--TSSEEEEEESSSSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccc-ccccccccccc-------------c--cccceEEEEecCcHHHHHHHHHH
Confidence 45666666666777778888887775543 22333333331 1 122345556776 7777776666
Q ss_pred cCCC-CeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCC-HHHHHHHHHHhh
Q 015764 130 DGQA-ENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKT-PSEAQIFLEALE 180 (401)
Q Consensus 130 ~~~~-~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~-~~eA~~al~~LE 180 (401)
+++. ..+++-.. ++..+|.-+++.. +.++...... .+|.+.+++-|.
T Consensus 79 l~~~G~~v~vg~~~~~~~~~~~~~~~~~----~~~i~g~~~~~~~~~~~~~~~la 129 (130)
T PF00107_consen 79 LRPGGRIVVVGVYGGDPISFNLMNLMFK----EITIRGSWGGSPEDFQEALQLLA 129 (130)
T ss_dssp EEEEEEEEEESSTSTSEEEEEHHHHHHT----TEEEEEESSGGHHHHHHHHHHHH
T ss_pred hccCCEEEEEEccCCCCCCCCHHHHHhC----CcEEEEEccCCHHHHHHHHHHhc
Confidence 6554 44444444 5778888888874 4466655544 488888877654
No 274
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=32.25 E-value=40 Score=28.46 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=15.2
Q ss_pred ceeeeeecCCCCEEEEEecCC
Q 015764 366 KAIPVTSLKVGDEVLLRVQGA 386 (401)
Q Consensus 366 ~~vsVt~LK~GD~VL~~~~~~ 386 (401)
.--.|.+|++||+|-+++..+
T Consensus 88 s~s~vl~L~~GD~V~v~~~~~ 108 (127)
T PF00386_consen 88 SNSAVLQLNKGDTVWVRLDSG 108 (127)
T ss_dssp EEEEEEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEecC
Confidence 334578999999999999864
No 275
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.19 E-value=4.7e+02 Score=25.23 Aligned_cols=123 Identities=8% Similarity=-0.052 Sum_probs=0.0
Q ss_pred CchhHhHHHHHhCCcEEEEcCcc-------hhhHhhccceeeeeeeee-cCCccccCCCCeeEEEEEecChhhhhhhccc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSEN-------QQLAIDWSTIALLDPLFI-KEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~~-------~~~~~~~~~i~~i~~l~~-~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 129 (401)
++.+-+..+++.|++.+++.... .+.++.+++=..+--|-. .++.+....... .-.++.++-.....
T Consensus 83 rs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~-----~~~~~~e~~~~l~~ 157 (232)
T PRK13586 83 RDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKE-----KSMEVIDGIKKVNE 157 (232)
T ss_pred CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCee-----CCCCHHHHHHHHHh
Q ss_pred cCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEE
Q 015764 130 DGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 130 ~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl 188 (401)
.+-.+.++.+-. +=.-=|=.+++..+......+++. +++.+|-+.+... |+||+++
T Consensus 158 ~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~~~~viasGGv~s~~Dl~~l~~~---G~~gviv 217 (232)
T PRK13586 158 LELLGIIFTYISNEGTTKGIDYNVKDYARLIRGLKEYAGGVSSDADLEYLKNV---GFDYIIV 217 (232)
T ss_pred cCCCEEEEecccccccCcCcCHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHC---CCCEEEE
No 276
>PF13403 Hint_2: Hint domain
Probab=32.13 E-value=40 Score=30.30 Aligned_cols=16 Identities=50% Similarity=0.765 Sum_probs=14.6
Q ss_pred eeeeeecCCCCEEEEE
Q 015764 367 AIPVTSLKVGDEVLLR 382 (401)
Q Consensus 367 ~vsVt~LK~GD~VL~~ 382 (401)
+++|-+|++||+|+-+
T Consensus 15 ~~~Ve~L~~GD~V~T~ 30 (147)
T PF13403_consen 15 PRPVEDLRPGDRVLTR 30 (147)
T ss_pred CeEeeccCCCCEEEec
Confidence 6899999999999976
No 277
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=31.91 E-value=52 Score=31.52 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=23.8
Q ss_pred CCcEEEEEe-CchhHhHHHHHhCCcEEEE
Q 015764 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVF 76 (401)
Q Consensus 49 ~~K~vWiw~-~~K~~vt~AlEsG~~~~v~ 76 (401)
..+.|++|| .+++.|...++.|+|+|+.
T Consensus 222 ~g~~v~~WTVn~~~~~~~l~~~GVdgIiT 250 (252)
T cd08574 222 ANISVNLYVVNEPWLYSLLWCSGVQSVTT 250 (252)
T ss_pred CCCEEEEEccCCHHHHHHHHHcCCCEEec
Confidence 566799999 5688999999999999885
No 278
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=31.89 E-value=44 Score=31.39 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=27.1
Q ss_pred ceeEEEecCCceeeeee--ccCCCeEEEEc---CCCCeeEE
Q 015764 280 VHAYVLVPGGKTCYLSE--LKSGKEVIVVD---QKGRQRTA 315 (401)
Q Consensus 280 VHaYv~~pggkT~YLSE--L~sG~eVLvVd---~~G~tR~~ 315 (401)
.|+|.. .++.+-|++. +..|++||+|| +.|.|-.+
T Consensus 96 ~~s~~~-~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a 135 (191)
T TIGR01744 96 VHSFTK-QTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHG 135 (191)
T ss_pred EEEeec-CccEEEEEEHHhCCCcCEEEEEEehhccChHHHH
Confidence 477777 5667788886 78999999999 77776443
No 279
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=31.61 E-value=1.2e+02 Score=30.52 Aligned_cols=136 Identities=14% Similarity=0.226 Sum_probs=77.9
Q ss_pred EEEEeC--chhHhHHHHHhCCcEEEEcCcc------hhhHhhccceeeee--eeeecCCccccCCCCeeEEEEEecChhh
Q 015764 53 VWIWTE--SKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLD--PLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (401)
Q Consensus 53 vWiw~~--~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~--~l~~~~g~~~~~~gk~v~~~~~v~~~e~ 122 (401)
|.+--+ +-+.+..|++.|++.++++.-+ .+..+++..++.-. ++-.+=|.+...++..++.. ..+++|+
T Consensus 80 V~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s-~~t~pee 158 (293)
T PRK07315 80 VAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG-ELAPIED 158 (293)
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc-CCCCHHH
Confidence 666332 6679999999999999998533 34444444433311 12233344433223222221 1489999
Q ss_pred hhhhccccCCCCeEEEe-------CCC-CeeeehhhhhhcccC-C-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCC
Q 015764 123 LQQLQPADGQAENIVID-------LPD-WQVIPAENIVASFQG-S-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVED 192 (401)
Q Consensus 123 ~e~~~~~~~~~~~vvv~-------~~D-W~iIPlENliA~~q~-~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d 192 (401)
..++. . ..+|++-+. +.. .+.|-+|-| .+++. . +.-|++.=.|--.-.-+-.+.+.|+++|=+.++=
T Consensus 159 a~~f~-~-tgvD~LAv~iG~vHG~y~t~~k~l~~e~L-~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i 235 (293)
T PRK07315 159 AKAMV-E-TGIDFLAAGIGNIHGPYPENWEGLDLDHL-EKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTEC 235 (293)
T ss_pred HHHHH-H-cCCCEEeeccccccccCCCCCCcCCHHHH-HHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHH
Confidence 88877 3 368998886 223 234555543 22222 1 2345555443222334666789999999999873
No 280
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=31.51 E-value=4.2e+02 Score=27.51 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=15.1
Q ss_pred EEEEEEEE-------EcCCcceEEEee
Q 015764 217 KATVTRVD-------VAGMGDRVCVDL 236 (401)
Q Consensus 217 ~atVt~V~-------~vGmGDRVCVDt 236 (401)
.++|.+|+ .+--||||++-+
T Consensus 271 ~~~VksI~~~~~~~~~a~~G~~v~i~l 297 (411)
T PRK04000 271 TTKIVSLRAGGEKVEEARPGGLVGVGT 297 (411)
T ss_pred eEEEeEEEECCEECCEEcCCCEEEEEe
Confidence 46777776 456899999865
No 281
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=31.40 E-value=1e+02 Score=31.31 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=35.6
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
.+|=.+|.|++||+ ++|+.|+|=|+|+.=+|+++++..+.+
T Consensus 189 ~kIEVEvesle~~~---eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 189 KKIEVEVESLEEAE---EALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred ceEEEEcCCHHHHH---HHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 46899999999987 567889999999999999998887774
No 282
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=31.39 E-value=37 Score=31.04 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhcccCeEEEec
Q 015764 170 SEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 170 ~eA~~al~~LE~G~DGVvl~~ 190 (401)
-++.-.|.+|.+|+|||++.-
T Consensus 41 vn~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 41 VNPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred cCHHHHHHHHHcCCCeEEEec
Confidence 478899999999999999864
No 283
>KOG3638 consensus Sonic hedgehog and related proteins [Signal transduction mechanisms]
Probab=31.25 E-value=1.2e+02 Score=31.90 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=62.7
Q ss_pred ecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEee----eeEEEeccceeEEEEEecCCCCeEEEEEeEecce
Q 015764 276 NAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVV----GRVKIESRPLILVEAKTNSGDQTLYGIILQNAET 351 (401)
Q Consensus 276 NAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~V----GRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAET 351 (401)
++=+-|+=+.+-.+-.+=+.||..||.||+.|..|++--..| =|--=...+++.|+++- |+ .|.+-+.|
T Consensus 207 ~cf~~~~~~~~~~~~~k~m~el~iGD~Vla~~~~~~~~~spv~~~lhR~pe~~~~F~~i~t~~----g~---~l~lT~~H 279 (414)
T KOG3638|consen 207 VCFPTDATVVLEQGGRKRMDELSIGDYVLAADQGGQTTYSPVALFLHREPEARAEFVVIETEQ----GE---TLQLTPQH 279 (414)
T ss_pred CCCCCCCEeEEecCceeecCCCCCCCeeeccccCCccccCchhhhhccCccccccceEEecCC----Cc---ccccchhh
Confidence 444555555554454566999999999999998555432211 11111345566777654 54 34444445
Q ss_pred EEEecCCCCCC-------CCCceeeeeecCCCCEEEEEec
Q 015764 352 VALVSPCKGTG-------EQEKAIPVTSLKVGDEVLLRVQ 384 (401)
Q Consensus 352 IRLv~p~~g~~-------~~g~~vsVt~LK~GD~VL~~~~ 384 (401)
.=.+.+...+. .+.+++.-..|++||-|++.-.
T Consensus 280 l~~~~~c~~~~~~~~~~~~~~~~v~A~~l~~gdcv~~~~~ 319 (414)
T KOG3638|consen 280 LVFVAQCQQQPQQFQYGPAGLEAVFASRLRIGDCVLVAPG 319 (414)
T ss_pred eeecCCCCCCccccccccCCcccccHhhCCcccEEEEecC
Confidence 44444442221 1467899999999999999874
No 284
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=30.87 E-value=32 Score=35.79 Aligned_cols=34 Identities=32% Similarity=0.506 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 015764 169 PSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (401)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (401)
...-+++-.+||.|+|+|++.++|.+.+++|.++
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~~~~~~v~~lg~i 46 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDEEDVERVRELGRI 46 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECHHHhHHHHhhCCe
Confidence 3455677889999999999999988888877654
No 285
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=30.83 E-value=1.6e+02 Score=25.56 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=38.0
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..+.++++..-... .--+++..++. ....++.... ..+......+++.|+++++.+|-++.++.+.
T Consensus 47 ~~dlvl~d~~~~~~-~g~~~~~~l~~~~~~~~ii~ls~-~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~ 114 (228)
T PRK11083 47 PPDLVILDVGLPDI-SGFELCRQLLAFHPALPVIFLTA-RSDEVDRLVGLEIGADDYVAKPFSPREVAAR 114 (228)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHhhCCCCCEEEEEc-CCcHHHHHHHhhcCCCeEEECCCCHHHHHHH
Confidence 35666664332221 11233333332 2345555443 3344556788999999999999998877543
No 286
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=30.57 E-value=3.4e+02 Score=23.08 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..+.++++..-...- --.++..+. ....++..... .+......+++.|++|++.+|-++.++.+.
T Consensus 47 ~~dlvi~d~~~~~~~-g~~~~~~l~-~~~~vi~~s~~-~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~ 111 (196)
T PRK10360 47 GVQVCICDISMPDIS-GLELLSQLP-KGMATIMLSVH-DSPALVEQALNAGARGFLSKRCSPDELIAA 111 (196)
T ss_pred CCCEEEEeCCCCCCC-HHHHHHHHc-cCCCEEEEECC-CCHHHHHHHHHcCCcEEEECCCCHHHHHHH
Confidence 467777753322211 112333333 23455555443 445567788899999999999998876544
No 287
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=30.54 E-value=1.2e+02 Score=31.80 Aligned_cols=55 Identities=27% Similarity=0.332 Sum_probs=39.2
Q ss_pred EeeeeEEEeccceeEEEEEecCCCCeEEEEEeEe---------------cceEEEecCCCCCCCCCceeeeeecCCCCEE
Q 015764 315 AVVGRVKIESRPLILVEAKTNSGDQTLYGIILQN---------------AETVALVSPCKGTGEQEKAIPVTSLKVGDEV 379 (401)
Q Consensus 315 ~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQn---------------AETIRLv~p~~g~~~~g~~vsVt~LK~GD~V 379 (401)
-.+||++|.-- | ..-|++..+..|| .+=|.|+..+ .|.|+.--+||-|++|
T Consensus 256 F~~G~~~I~G~-----~----~~~g~t~~i~FqNEfl~a~~~G~~l~~~PDLI~lld~~-----Tg~piTTe~lkyG~rV 321 (357)
T COG3535 256 FARGRVTIDGL-----E----EYRGSTLEIAFQNEFLVAEKDGKILATTPDLIVLLDLN-----TGLPITTESLKYGQRV 321 (357)
T ss_pred eeeeeEEEech-----h----hcCCceEEEEEEeeeeEEecCCcEEEecCceEEEEecC-----CCCccchHHhhcCcEE
Confidence 46788887642 1 1135666666666 4567888877 3788888899999999
Q ss_pred EEEe
Q 015764 380 LLRV 383 (401)
Q Consensus 380 L~~~ 383 (401)
.+.-
T Consensus 322 ~V~a 325 (357)
T COG3535 322 VVIA 325 (357)
T ss_pred EEEE
Confidence 9873
No 288
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=30.51 E-value=99 Score=30.40 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=31.2
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 015764 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (401)
Q Consensus 149 ENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (401)
+.+++.++..+-.+++ .|++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l---~~~GVdgIi--TD~P~~l~~ 296 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERA---FELGADGVM--TDYPTKLRE 296 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHH---HhcCCCEEE--eCCHHHHHH
Confidence 4667777666655554 57777776655 568999987 788886543
No 289
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=30.51 E-value=35 Score=31.21 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=21.3
Q ss_pred ecce-EEEecCCCCCCCCCceeeeeecCCCCEEEEE
Q 015764 348 NAET-VALVSPCKGTGEQEKAIPVTSLKVGDEVLLR 382 (401)
Q Consensus 348 nAET-IRLv~p~~g~~~~g~~vsVt~LK~GD~VL~~ 382 (401)
+.++ +++.+.+. ...++..+|+|||.|++.
T Consensus 31 ~~~~~~~v~r~~~-----~~~i~~~~L~~GDiI~l~ 61 (230)
T PF00122_consen 31 NPQKKVTVIRDGR-----WQKIPSSELVPGDIIILK 61 (230)
T ss_dssp SSSEEEEEEETTE-----EEEEEGGGT-TTSEEEEE
T ss_pred CCCccEEEEeccc-----cccchHhhccceeeeecc
Confidence 3445 66666542 567999999999999985
No 290
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=30.44 E-value=97 Score=31.08 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=34.0
Q ss_pred ceEEEEcCCHHH-HHHHHHHhhc---ccCeEEEecC------CHHHHHHHHHhhcc
Q 015764 160 KTVFAISKTPSE-AQIFLEALEQ---GLGGIVLKVE------DVKAVLALKEYFDG 205 (401)
Q Consensus 160 ~~l~a~v~~~~e-A~~al~~LE~---G~DGVvl~~~------d~~ev~~l~~~~~~ 205 (401)
.++..++.+.++ +.-++++++. |+|+|.|++- .++.++++++.++.
T Consensus 185 ~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~ 240 (302)
T cd01571 185 VPRIALIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSRRGVFRYLIREVRWALDI 240 (302)
T ss_pred CCeEEEEeecCcchHHHHHHHHHhCCCCcEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 479999999983 5555555555 5999999984 46777888887743
No 291
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=30.42 E-value=48 Score=32.81 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=29.6
Q ss_pred ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 015764 286 VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 286 ~pggk-T~YL-SEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
.|+|. +.|| ..|+.||+|.+-...|+-..-. -.-..+|++||=+-
T Consensus 72 ~~~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~---~~~~~~~~lliagG 118 (352)
T TIGR02160 72 IPGGLFSTWANDEIRPGDTLEVMAPQGLFTPDL---STPHAGHYVAVAAG 118 (352)
T ss_pred eCCCcchHHHHhcCCCCCEEEEeCCceeeecCC---CccccccEEEEecc
Confidence 36554 7899 5899999999988888642110 00123788887653
No 292
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=30.40 E-value=1.9e+02 Score=24.81 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=39.4
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..+.++++..-... .--+++..+.. ....++... +..+......+++.|+++++.+|-+..++.+.
T Consensus 42 ~~dlvl~d~~~~~~-~g~~~~~~l~~~~~~~~iivls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 109 (218)
T TIGR01387 42 DYDLIILDVMLPGM-DGWQILQTLRRSGKQTPVLFLT-ARDSVADKVKGLDLGADDYLVKPFSFSELLAR 109 (218)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHccCCCCcEEEEE-cCCCHHHHHHHHHcCCCeEEECCCCHHHHHHH
Confidence 45677774322221 11133333332 234455544 44556677888999999999999998876543
No 293
>PRK06201 hypothetical protein; Validated
Probab=30.34 E-value=33 Score=32.86 Aligned_cols=44 Identities=34% Similarity=0.453 Sum_probs=31.5
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 015764 277 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (401)
Q Consensus 277 AGaVHaYv~~pggkT---~YLSEL~sG~eVLvVd~~G~tR~~~VGRvK 321 (401)
+|+.-.--..|++.. .++...++|| |+++|..|..+.+..|-.-
T Consensus 54 ~G~A~Tv~~~~~d~~~~~~ai~~~~pG~-VlVid~~g~~~~a~~G~~~ 100 (221)
T PRK06201 54 AGTALTVRTRPGDNLMIHRALDLARPGD-VIVVDGGGDLTNALVGEIM 100 (221)
T ss_pred EEEEEEEEeeCCCcHHHHHHHhccCCCc-EEEEECCCCCCccchhHHH
Confidence 455444444454433 4588889999 9999999999999998654
No 294
>PRK13795 hypothetical protein; Provisional
Probab=30.23 E-value=55 Score=36.07 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=39.1
Q ss_pred eeeecCCcee----EEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccce
Q 015764 273 FRVNAGPVHA----YVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPL 327 (401)
Q Consensus 273 FRVNAGaVHa----Yv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPL 327 (401)
--|+.|++++ .-.++-|=+..=.+++.||+|+|++.+|+. .-||++++-..-|
T Consensus 129 VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~~e~g~~--vavG~a~~s~~e~ 185 (636)
T PRK13795 129 VIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVTEDGEV--VGVGRAKMDGDDM 185 (636)
T ss_pred EEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEEeCCCCE--EEEEEeccCHHHH
Confidence 4578888752 333445566666789999999999998874 8899998865555
No 295
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=30.07 E-value=40 Score=37.47 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=32.3
Q ss_pred eEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 015764 282 AYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (401)
Q Consensus 282 aYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLl 328 (401)
+-|..|| =...=.++++||+|+||+.+| +..-|||+++-.+-|.
T Consensus 580 ~~v~apg-Vv~~d~~ir~gDeV~Vv~e~~--~~lavG~A~~~~~em~ 623 (639)
T PRK13534 580 KSVFAKF-VIDCDEEIRPYDEVLVVNEDD--ELLAYGKALLNGRELM 623 (639)
T ss_pred CcccCCc-ceecCCCCCCCCEEEEEecCC--cEEEEEEEecCHHHHh
Confidence 3444443 233336899999999999887 5699999998777664
No 296
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=30.04 E-value=63 Score=30.48 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=40.0
Q ss_pred CCCeeeecCC-----ceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEEeccceeEEEEE
Q 015764 270 SRPFRVNAGP-----VHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILVEAK 333 (401)
Q Consensus 270 ~RPFRVNAGa-----VHaYv~~pggkT~YLSEL~sG~eV-LvVd~~G~tR~~~VGRvKIE~RPLlLVeAe 333 (401)
.|||-+-..| ..=+|..-|.-|.||..|+.||+| .+....|+.-. +- ..+|+++|=+=
T Consensus 43 ~~pySi~s~~~~~~~~~~~vk~~G~~t~~l~~l~~G~~v~~i~gP~G~~~~----~~--~~~~~lliagG 106 (248)
T cd06219 43 RIPLTIADWDPEKGTITIVVQVVGKSTRELATLEEGDKIHDVVGPLGKPSE----IE--NYGTVVFVGGG 106 (248)
T ss_pred ccceEeEEEcCCCCEEEEEEEeCCchHHHHHhcCCCCEeeeeecCCCCCee----cC--CCCeEEEEeCc
Confidence 4677753332 333455568899999999999999 59999998532 11 25788888653
No 297
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=29.78 E-value=2e+02 Score=27.28 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=64.7
Q ss_pred EEEEEe--CchhHhHHHHHhCCcEEEEcCc---chhh----HhhccceeeeeeeeecCC-ccccCCCCeeEEEEEecChh
Q 015764 52 RVWIWT--ESKQVMTAAVERGWNTFVFLSE---NQQL----AIDWSTIALLDPLFIKEG-EVYDSGDRRVGSIIEVSTPQ 121 (401)
Q Consensus 52 ~vWiw~--~~K~~vt~AlEsG~~~~v~~~~---~~~~----~~~~~~i~~i~~l~~~~g-~~~~~~gk~v~~~~~v~~~e 121 (401)
.+|+=- ++.+-+...++.|++.+++... +.+. ++..++=..+--|-..+| +++...++.. . -.+++
T Consensus 75 ~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~-~---~~~~~ 150 (229)
T PF00977_consen 75 PIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQES-S---GIDLE 150 (229)
T ss_dssp EEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEE-E---EEEHH
T ss_pred cEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCcccc-C---CcCHH
Confidence 355522 5899999999999999998753 2233 333333223333444555 4443333321 1 12333
Q ss_pred hhhhhccccCCCCeEEEeCCCC----eeeehh---hhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 122 ELQQLQPADGQAENIVIDLPDW----QVIPAE---NIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 122 ~~e~~~~~~~~~~~vvv~~~DW----~iIPlE---NliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
+.-......+ ...+|+..-|. +=+.+| .+.+.. +..+++ .+++.+|-+.+. +.|+||+++-+
T Consensus 151 ~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~---~~G~~gvivg~ 221 (229)
T PF00977_consen 151 EFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELK---KAGIDGVIVGS 221 (229)
T ss_dssp HHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHH---HTTECEEEESH
T ss_pred HHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHH---HCCCcEEEEeh
Confidence 3333333333 44455533221 113333 333332 445655 488999988777 99999999753
No 298
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=29.57 E-value=47 Score=30.46 Aligned_cols=49 Identities=27% Similarity=0.419 Sum_probs=32.4
Q ss_pred CCceeEEEe-cCCc-eeeee-eccCCCeEEEEcCCCCeeEEeeeeEEE-eccceeEEEE
Q 015764 278 GPVHAYVLV-PGGK-TCYLS-ELKSGKEVIVVDQKGRQRTAVVGRVKI-ESRPLILVEA 332 (401)
Q Consensus 278 GaVHaYv~~-pggk-T~YLS-EL~sG~eVLvVd~~G~tR~~~VGRvKI-E~RPLlLVeA 332 (401)
|-.-=+|.. |+|+ |+||. .|+.||+|.+....|+... .- ..+|+++|=+
T Consensus 58 ~~l~~~v~~~~~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l------~~~~~~~~lliag 110 (231)
T cd06191 58 DEISITVKRVPGGRVSNYLREHIQPGMTVEVMGPQGHFVY------QPQPPGRYLLVAA 110 (231)
T ss_pred CeEEEEEEECCCCccchHHHhcCCCCCEEEEeCCccceEe------CCCCCCcEEEEec
Confidence 334444543 6564 99997 6999999999999887421 11 2367777644
No 299
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=29.46 E-value=1.2e+02 Score=32.57 Aligned_cols=66 Identities=12% Similarity=0.317 Sum_probs=37.9
Q ss_pred Chhhhhhhcccc-CCCCeEEEeCC-CCeeeehhhhhhcccCC--CceEEE-EcCCHHHHHHHHHHhhcccCeEEE
Q 015764 119 TPQELQQLQPAD-GQAENIVIDLP-DWQVIPAENIVASFQGS--GKTVFA-ISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 119 ~~e~~e~~~~~~-~~~~~vvv~~~-DW~iIPlENliA~~q~~--~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
++++++++..+. +.++.++++.. +.+.-.+| .|..+... +..|+| .+.|.++|+ .+.+.|+|+|.+
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~-~i~~ik~~~~~~~v~aG~V~t~~~a~---~~~~aGad~I~v 309 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQID-MIKKLKSNYPHVDIIAGNVVTADQAK---NLIDAGADGLRI 309 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHH-HHHHHHhhCCCceEEECCcCCHHHHH---HHHHcCCCEEEE
Confidence 456666655544 35888888753 22222222 34444332 345555 566666666 455789999975
No 300
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=29.38 E-value=26 Score=28.69 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=24.6
Q ss_pred eeeeeecCCCCEEEEEecCCCcccceee
Q 015764 367 AIPVTSLKVGDEVLLRVQGAARHTGIEI 394 (401)
Q Consensus 367 ~vsVt~LK~GD~VL~~~~~~gRHfG~~I 394 (401)
.++..+++|||-|..+.....-|+||-+
T Consensus 46 ~~~~~~~~pGDlif~~~~~~~~Hvgiy~ 73 (105)
T PF00877_consen 46 RVPISELQPGDLIFFKGGGGISHVGIYL 73 (105)
T ss_dssp HEEGGG-TTTEEEEEEGTGGEEEEEEEE
T ss_pred ccchhcCCcccEEEEeCCccCCEeEEEE
Confidence 5899999999999999988889999987
No 301
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=29.36 E-value=5.7e+02 Score=25.30 Aligned_cols=128 Identities=14% Similarity=0.221 Sum_probs=64.9
Q ss_pred EEEe--CchhHhHHHHHhCCcEEEEcCcc------hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecCh-----
Q 015764 54 WIWT--ESKQVMTAAVERGWNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTP----- 120 (401)
Q Consensus 54 Wiw~--~~K~~vt~AlEsG~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~----- 120 (401)
|++. .+.+.+..|..+|+|.++++-|| ++.+++ .+ +..+ . ..+..+..+ ++.|.+.
T Consensus 6 ~LfvP~~~~~~~~ka~~~gaD~vilDLEDav~~~~k~~AR~--~v--~~~l--~---~~~~~~~~~--~VRIn~~~~~~~ 74 (288)
T TIGR01588 6 MMFVPGNNPAMISDAFIYGADSVMFDLEDAVSLAEKDSARL--LV--YEAL--Q---TPDYGDTET--VVRINGLDTPFG 74 (288)
T ss_pred eeecCCCCHHHHHhhhhcCCCEEEEecccCCCcchHHHHHH--HH--HHHH--h---ccCCCCCEE--EEEECCCCChhH
Confidence 4544 46788899999999999999775 222221 01 0000 0 011123333 4455532
Q ss_pred -hhhhhhccccCCCCeEEEeCC-C-Ceeeehhhhhhcc------cCCCceEEEEcCCHHHHHHHHHHhh--cccCeEEEe
Q 015764 121 -QELQQLQPADGQAENIVIDLP-D-WQVIPAENIVASF------QGSGKTVFAISKTPSEAQIFLEALE--QGLGGIVLK 189 (401)
Q Consensus 121 -e~~e~~~~~~~~~~~vvv~~~-D-W~iIPlENliA~~------q~~~~~l~a~v~~~~eA~~al~~LE--~G~DGVvl~ 189 (401)
+|+..+.. ...+.+++--- + .++-=+..++..+ ....+.+++.+.|++-..-+-+++. -|+||+.+-
T Consensus 75 ~~di~~~l~--~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G 152 (288)
T TIGR01588 75 LADIKAVVK--AGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIALG 152 (288)
T ss_pred HHHHHHHHh--cCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeC
Confidence 33343332 23455555111 1 0111111111111 1124568888888877777777773 478888888
Q ss_pred cCCHH
Q 015764 190 VEDVK 194 (401)
Q Consensus 190 ~~d~~ 194 (401)
+.|..
T Consensus 153 ~~Dls 157 (288)
T TIGR01588 153 AEDYV 157 (288)
T ss_pred HHHHH
Confidence 77654
No 302
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=29.26 E-value=1.6e+02 Score=26.99 Aligned_cols=79 Identities=19% Similarity=0.167 Sum_probs=46.7
Q ss_pred EEEEecChhhhhhhcccc--CCCCeEEEeCCCCeeeehhhhhhcccCCCceEEE---EcCCHHHHHHHHHHhhcccCeEE
Q 015764 113 SIIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSGKTVFA---ISKTPSEAQIFLEALEQGLGGIV 187 (401)
Q Consensus 113 ~~~~v~~~e~~e~~~~~~--~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a---~v~~~~eA~~al~~LE~G~DGVv 187 (401)
..+...++++...++..+ +..+.+-+..++..-+| .+..+...-..+.. .+-+.++++ .+++.|+|+|+
T Consensus 8 ~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~---~i~~l~~~~~~~~iGag~v~~~~~~~---~a~~~Ga~~i~ 81 (190)
T cd00452 8 AVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALE---AIRALRKEFPEALIGAGTVLTPEQAD---AAIAAGAQFIV 81 (190)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHH---HHHHHHHHCCCCEEEEEeCCCHHHHH---HHHHcCCCEEE
Confidence 334555677665554433 45788888766555333 44444333222333 445555554 55679999999
Q ss_pred EecCCHHHHH
Q 015764 188 LKVEDVKAVL 197 (401)
Q Consensus 188 l~~~d~~ev~ 197 (401)
+...|++-+.
T Consensus 82 ~p~~~~~~~~ 91 (190)
T cd00452 82 SPGLDPEVVK 91 (190)
T ss_pred cCCCCHHHHH
Confidence 8887776443
No 303
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=29.25 E-value=57 Score=25.80 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=12.2
Q ss_pred ccCCCeEEEEcCCCCeeEE
Q 015764 297 LKSGKEVIVVDQKGRQRTA 315 (401)
Q Consensus 297 L~sG~eVLvVd~~G~tR~~ 315 (401)
+++||+|...|++|+--+.
T Consensus 6 f~~GdrVQlTD~Kgr~~Ti 24 (54)
T PF14801_consen 6 FRAGDRVQLTDPKGRKHTI 24 (54)
T ss_dssp --TT-EEEEEETT--EEEE
T ss_pred CCCCCEEEEccCCCCeeeE
Confidence 6899999999999986655
No 304
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=29.17 E-value=33 Score=31.81 Aligned_cols=69 Identities=25% Similarity=0.286 Sum_probs=41.3
Q ss_pred EEEeccCceEEEEeeccc--cCCCCCCCCee-eecCCceeEEEecC-Cceeeeee--ccCCCeEEEEc---CCCCeeE
Q 015764 246 LLVGSFARGLFLVHSECL--ESNYIASRPFR-VNAGPVHAYVLVPG-GKTCYLSE--LKSGKEVIVVD---QKGRQRT 314 (401)
Q Consensus 246 mLVGS~s~glFLVhsEt~--es~Yva~RPFR-VNAGaVHaYv~~pg-gkT~YLSE--L~sG~eVLvVd---~~G~tR~ 314 (401)
..||=-++|+.|-+.=.. .-||+..|=.+ +--+-+|.+-.... -.|-|++. |+.||+|++|| +.|.|=.
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~ 133 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTAL 133 (179)
T ss_pred EEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHH
Confidence 355666667766554333 34676666544 33344433333333 37777775 77999999999 6776633
No 305
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=29.14 E-value=68 Score=27.88 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCcEEEEEe-CchhHhHHHHHhCCcEEEEcC
Q 015764 48 SKPKRVWIWT-ESKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 48 ~~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~ 78 (401)
+..+.+++|+ .+++.+..++..|+|+++.+.
T Consensus 158 ~~g~~v~~wtvn~~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 158 AAGLKVYVWTVNDPEDARRLLALGVDGIITDD 189 (189)
T ss_pred HcCCEEEEEcCCCHHHHHHHHHCCCCEEecCC
No 306
>PF06938 DUF1285: Protein of unknown function (DUF1285); InterPro: IPR010707 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.; PDB: 2RA9_A 2RE3_B.
Probab=29.12 E-value=2.6e+02 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.479 Sum_probs=23.4
Q ss_pred eeEEEeccceeEEEEEec-CCCCe-EEEEEeEecceEEE
Q 015764 318 GRVKIESRPLILVEAKTN-SGDQT-LYGIILQNAETVAL 354 (401)
Q Consensus 318 GRvKIE~RPLlLVeAe~~-~~~G~-~~sviLQnAETIRL 354 (401)
.|+.+|.-|++.++.+.. +++|+ .+.......+.+++
T Consensus 46 ~~I~VEDaPf~iv~~~~~~~~~~~~~l~~~tn~gd~~~~ 84 (148)
T PF06938_consen 46 VRIQVEDAPFLIVDVDVEGEGEGQQVLTFRTNTGDVVRL 84 (148)
T ss_dssp EEEEESS-SEEEEEEEECS-GCCT-EEEEEETTS-EEE-
T ss_pred EEEEEecCcEEEEEEEEeccCCCceEEEEEeccCcEEEc
Confidence 588999999999999985 22344 55665555555444
No 307
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.05 E-value=4.1e+02 Score=25.55 Aligned_cols=122 Identities=5% Similarity=-0.032 Sum_probs=0.0
Q ss_pred CchhHhHHHHHhCCcEEEEcC---cchhhHhhccce---eeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 015764 58 ESKQVMTAAVERGWNTFVFLS---ENQQLAIDWSTI---ALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~---~~~~~~~~~~~i---~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 131 (401)
++-+-+...++.|++.+++.. ++.++.+++..- ..+--|-..+|++.....+. -++-.-++.+.....
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~------~~~~~~~~~~~~~~~ 159 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEE------DTELNLFSFVRQLSD 159 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcc------cCCCCHHHHHHHHHH
Q ss_pred C-CCeEEEeCCCCe------eeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 132 Q-AENIVIDLPDWQ------VIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 132 ~-~~~vvv~~~DW~------iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
. ...+|+..-+=. ..++-.-+++..+-+.-.-..+.+.+|.+.++.. |++||++
T Consensus 160 ~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~---G~~~viv 220 (234)
T PRK13587 160 IPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASL---NVHAAII 220 (234)
T ss_pred cCCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc---CCCEEEE
No 308
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=29.03 E-value=4.1e+02 Score=24.96 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=18.2
Q ss_pred CchhHhHHHHHhCCcEEEEcCc
Q 015764 58 ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 58 ~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
.+.+-+...++.|++.+++...
T Consensus 81 ~s~~d~~~~l~~G~~~v~ig~~ 102 (243)
T cd04731 81 RSLEDARRLLRAGADKVSINSA 102 (243)
T ss_pred CCHHHHHHHHHcCCceEEECch
Confidence 4678888889999999998753
No 309
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.96 E-value=68 Score=26.21 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.0
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEEe
Q 015764 296 ELKSGKEVIVVDQKGRQRTAVVGRVKIE 323 (401)
Q Consensus 296 EL~sG~eVLvVd~~G~tR~~~VGRvKIE 323 (401)
-|+.||.|.+.+..|+. ..+||+.
T Consensus 48 gi~~Gd~V~v~~~~G~~----~~~v~~~ 71 (120)
T cd00508 48 GIKDGDLVRVSSRRGSV----VVRARVT 71 (120)
T ss_pred CCCCCCEEEEEeCCEEE----EEEEEEC
Confidence 47899999999998843 3466654
No 310
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=28.96 E-value=78 Score=35.09 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=40.6
Q ss_pred CCCeeeec-----CCceeEEEecCCceeeeeeccCCCeE-EEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 270 SRPFRVNA-----GPVHAYVLVPGGKTCYLSELKSGKEV-IVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 270 ~RPFRVNA-----GaVHaYv~~pggkT~YLSEL~sG~eV-LvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|||-+.- |-+-=.+..-|.-|+||.+|+.||.| -+...-|+.-.. . +.+|+++|=+
T Consensus 44 ~rp~Si~~~~~~~g~i~~~vk~vG~~T~~L~~l~~Gd~v~~v~GP~G~~~~~--~----~~~~~llvaG 106 (752)
T PRK12778 44 RIPLTIADADPEKGTITLVIQEVGLSTTKLCELNEGDYITDVVGPLGNPSEI--E----NYGTVVCAGG 106 (752)
T ss_pred eeEEEeeeeCCCCCEEEEEEEEcCchHHHHhcCCCCCEeCeEeCCCCCCccC--C----CCCeEEEEEC
Confidence 57888752 33444555568899999999999999 699999987432 1 2367777643
No 311
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=28.70 E-value=6.3e+02 Score=26.93 Aligned_cols=161 Identities=22% Similarity=0.259 Sum_probs=93.6
Q ss_pred cCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeC-------CCC------eeeehh-----hhhhcccCCCceEEE--
Q 015764 105 DSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDL-------PDW------QVIPAE-----NIVASFQGSGKTVFA-- 164 (401)
Q Consensus 105 ~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~-------~DW------~iIPlE-----NliA~~q~~~~~l~a-- 164 (401)
++++......+.+-|.+.+..+...+-++|.+++-. .|+ +.||.= .|.+...++...+=.
T Consensus 136 NENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGG 215 (369)
T COG0263 136 NENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGG 215 (369)
T ss_pred cCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCccc
Confidence 444444445566778888888777777899988832 345 455531 233333222211111
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCc
Q 015764 165 ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGE 244 (401)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GE 244 (401)
-..-.+-|+ -+.+.|++-|+-..++++.+. .+++
T Consensus 216 M~TKl~AA~---iA~~aG~~~iI~~g~~~~~i~---~~~~---------------------------------------- 249 (369)
T COG0263 216 MRTKLEAAK---IATRAGVPVIIASGSKPDVIL---DALE---------------------------------------- 249 (369)
T ss_pred HHHHHHHHH---HHHHcCCcEEEecCCCcchHH---HHHh----------------------------------------
Confidence 111223344 456789999999888888554 3331
Q ss_pred eEEEeccCceEEEE-eeccccCC---CCCC-----CCeeeecCCceeEE-----EecCCceeeeeeccCCCeEEEEcCCC
Q 015764 245 GLLVGSFARGLFLV-HSECLESN---YIAS-----RPFRVNAGPVHAYV-----LVPGGKTCYLSELKSGKEVIVVDQKG 310 (401)
Q Consensus 245 GmLVGS~s~glFLV-hsEt~es~---Yva~-----RPFRVNAGaVHaYv-----~~pggkT~YLSEL~sG~eVLvVd~~G 310 (401)
..+.|.++. ..+..-+. |++- =--+|++||++|-. +.|.|-+.-=-..+.||-|-+. .+|
T Consensus 250 -----~~~~GT~F~~~~~~~~~ark~Wi~~~~~~~G~i~iD~GA~~Al~~~gkSLLpaGV~~V~G~F~rGdvV~i~-~~g 323 (369)
T COG0263 250 -----GEAVGTLFEPQAKERLNARKQWIAGALPPAGEITVDAGAVEALLEQGKSLLPAGVTSVEGNFSRGDVVRIR-PQG 323 (369)
T ss_pred -----CCCCccEEecCCcchhhhhHHHhhcCCCCCceEEECccHHHHHHhcCCccccccceEeeeeecCCCEEEEe-cCC
Confidence 111122221 11111100 1111 12679999999987 7899999999999999999999 666
Q ss_pred CeeEEeeeeEE
Q 015764 311 RQRTAVVGRVK 321 (401)
Q Consensus 311 ~tR~~~VGRvK 321 (401)
. .|||-.
T Consensus 324 ~----~iarG~ 330 (369)
T COG0263 324 G----EIARGL 330 (369)
T ss_pred c----eeEeee
Confidence 5 566643
No 312
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=28.68 E-value=76 Score=31.16 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=26.3
Q ss_pred CcEEEEEe-CchhHhHHHHHhCCcEEEEcCc
Q 015764 50 PKRVWIWT-ESKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 50 ~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~ 79 (401)
..+|++|| .+++.|..-++-|+|+||.+..
T Consensus 230 gl~V~~WTVN~~~~~~~l~~~GVDgIiTD~P 260 (263)
T cd08580 230 KVKIVLFGINTADDYRLAKCLGADAVMVDSP 260 (263)
T ss_pred CcEEEEEEeCCHHHHHHHHHcCCCEEEeCCc
Confidence 67899999 6889999999999999998653
No 313
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=28.57 E-value=3.1e+02 Score=23.96 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=38.2
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC-CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG-SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~-~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
..+.++++..-... .--.++..+.. ....++..... .+......+++.|+|+.+.+|-++.++.+..
T Consensus 45 ~~dlvild~~l~~~-~g~~~~~~lr~~~~~pvi~lt~~-~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i 112 (225)
T PRK10529 45 KPDLIILDLGLPDG-DGIEFIRDLRQWSAIPVIVLSAR-SEESDKIAALDAGADDYLSKPFGIGELQARL 112 (225)
T ss_pred CCCEEEEeCCCCCC-CHHHHHHHHHcCCCCCEEEEECC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 46777775332221 11122222221 23345544433 3445667899999999999999988775443
No 314
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.49 E-value=1.5e+02 Score=29.59 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=34.1
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHHhh
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~~~ 203 (401)
..|-.+++|.+||+.+ ++.|+|-|.|++=.+++++++.+.+
T Consensus 189 ~~Igvsv~tleea~~A---~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 189 VKIEVETETEEQVREA---VAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CEEEEEeCCHHHHHHH---HHcCCCEEEECCCCHHHHHHHHHhc
Confidence 4688999999998876 4799999999888888888777654
No 315
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=28.35 E-value=69 Score=28.80 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCcEEEEEe-Cc-hhHhHHHHHhCCcEEEE
Q 015764 49 KPKRVWIWT-ES-KQVMTAAVERGWNTFVF 76 (401)
Q Consensus 49 ~~K~vWiw~-~~-K~~vt~AlEsG~~~~v~ 76 (401)
....+++|| .+ .+.+...++.|+|+++.
T Consensus 148 ~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~T 177 (179)
T cd08555 148 LGLLSRIWTVNDNNEIINKFLNLGVDGLIT 177 (179)
T ss_pred CCCEEEEEeeCChHHHHHHHHHcCCCEEeC
Confidence 456799999 45 89999999999999875
No 316
>PRK05967 cystathionine beta-lyase; Provisional
Probab=28.30 E-value=28 Score=36.13 Aligned_cols=118 Identities=11% Similarity=0.163 Sum_probs=65.1
Q ss_pred hHHHHHhCCcEEEEcCcchhhHhhccceeeeee---eee-cCCc---------cccCCCCeeEEEEEecChhhhhhhccc
Q 015764 63 MTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFI-KEGE---------VYDSGDRRVGSIIEVSTPQELQQLQPA 129 (401)
Q Consensus 63 vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~---l~~-~~g~---------~~~~~gk~v~~~~~v~~~e~~e~~~~~ 129 (401)
.-++||.|.+++++.+.......-+..+ ++| +.+ +.+. .++.-|..+ .++...+.++++.+..
T Consensus 72 ~la~le~~~~~v~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v-~~vd~~~~e~l~~al~- 147 (395)
T PRK05967 72 AIDALEGSAGTILVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTMLKRLGVEV-EYYDPEIGAGIAKLMR- 147 (395)
T ss_pred HHHHHhCCCCEEEECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHHHhcCeEE-EEeCCCCHHHHHHhcC-
Confidence 3457898999999988543333222222 222 222 2221 123334332 2222222233333221
Q ss_pred cCCCCeEEEeCCC---CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 015764 130 DGQAENIVIDLPD---WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (401)
Q Consensus 130 ~~~~~~vvv~~~D---W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (401)
.+.+-|+++... +++.|++.|.+.+... .++..+.+.-..-..+.-|+.|+|=|+
T Consensus 148 -~~TklV~lesPsNP~l~v~dl~~I~~la~~~--g~~vvVD~t~a~p~~~~pl~~GaDivv 205 (395)
T PRK05967 148 -PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRH--GAIVMMDNTWATPLYFRPLDFGVDISI 205 (395)
T ss_pred -cCceEEEEECCCCCCCcHHHHHHHHHHHHHh--CCEEEEECCccCceecChhHcCCCEEE
Confidence 245677777643 6888999988876543 356666666666777899999998443
No 317
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=28.13 E-value=1.5e+02 Score=28.85 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=42.6
Q ss_pred CCCeEEEeCCCCeeeehhhhhhccc--CCCceEEEEcC--CHHHHHHHH-HHhhcccCeEEE-----ecCCH-HHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQ--GSGKTVFAISK--TPSEAQIFL-EALEQGLGGIVL-----KVEDV-KAVLALK 200 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q--~~~~~l~a~v~--~~~eA~~al-~~LE~G~DGVvl-----~~~d~-~ev~~l~ 200 (401)
.+|++=.. |. -+++.+-...+ .-+...+...+ |.+++..++ .+++.|++|+.. ..+|| ..+++|+
T Consensus 173 GAD~vKt~---~~-~~~~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~ 248 (267)
T PRK07226 173 GADIVKTN---YT-GDPESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAIS 248 (267)
T ss_pred CCCEEeeC---CC-CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHH
Confidence 57888554 33 12343322222 23445566677 888887775 788999999964 44565 4556666
Q ss_pred Hhhcc
Q 015764 201 EYFDG 205 (401)
Q Consensus 201 ~~~~~ 205 (401)
.++..
T Consensus 249 ~~v~~ 253 (267)
T PRK07226 249 AVVHE 253 (267)
T ss_pred HHHhC
Confidence 66643
No 318
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=28.06 E-value=3.5e+02 Score=22.87 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=14.9
Q ss_pred eEEEEEecCCCCeEEEEEeEec
Q 015764 328 ILVEAKTNSGDQTLYGIILQNA 349 (401)
Q Consensus 328 lLVeAe~~~~~G~~~sviLQnA 349 (401)
..||++.+.+-|....+|+||=
T Consensus 4 ~VlE~~~~~g~G~vatviV~~G 25 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNG 25 (95)
T ss_pred EEEEEEecCCCCccEEEEEEcC
Confidence 3577777654567778888773
No 319
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=28.03 E-value=37 Score=35.50 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=25.8
Q ss_pred HHHHHHHhhcccCeEEEecCCHHHHHHHHHh
Q 015764 172 AQIFLEALEQGLGGIVLKVEDVKAVLALKEY 202 (401)
Q Consensus 172 A~~al~~LE~G~DGVvl~~~d~~ev~~l~~~ 202 (401)
-+.+-.+||.|+|+|++.++|.+.+++|.++
T Consensus 15 k~~vt~AlEsGvd~vv~~~~~~~~~~~lg~~ 45 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDDEDVEKVRELGRI 45 (354)
T ss_pred HHHHHHHHHcCCCEEEECHhHhhhhhccceE
Confidence 4567789999999999999988888777553
No 320
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=27.99 E-value=4.4e+02 Score=25.59 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=60.4
Q ss_pred eeeeeecCCcccc-CCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCee--ee-----hhhhhhcccCCCceEEE
Q 015764 93 LDPLFIKEGEVYD-SGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV--IP-----AENIVASFQGSGKTVFA 164 (401)
Q Consensus 93 i~~l~~~~g~~~~-~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~i--IP-----lENliA~~q~~~~~l~a 164 (401)
|..|.+.+|+... -+|+.--......+|.++.+.-.. ..++++.+-..|=.+ -| ++.|.+.. .+-.+=.
T Consensus 4 IPaIDl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~-~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGG 80 (241)
T PRK14114 4 VPAIDLFRGKVARMVKGKKENTIFYEKDPAELVEKLIE-EGFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGG 80 (241)
T ss_pred EEEEEEECCEEEEeeccccCcceEECCCHHHHHHHHHH-CCCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEec
Confidence 3445666776542 123322222335577765554444 346666664444321 11 23343332 2446777
Q ss_pred EcCCHHHHHHHHHHhhcccCeEEEec---CCHHHHHHHHH
Q 015764 165 ISKTPSEAQIFLEALEQGLGGIVLKV---EDVKAVLALKE 201 (401)
Q Consensus 165 ~v~~~~eA~~al~~LE~G~DGVvl~~---~d~~ev~~l~~ 201 (401)
.+++.++++.+|. .|+|=|++.+ +||+-++++.+
T Consensus 81 GIrs~e~~~~~l~---~Ga~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 81 GIRSLDYAEKLRK---LGYRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred CCCCHHHHHHHHH---CCCCEEEECchhhCCHHHHHHHHH
Confidence 8999999998775 6999999999 68887777644
No 321
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=27.98 E-value=1.3e+02 Score=28.24 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=28.1
Q ss_pred CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 159 GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 159 ~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..+++......+++...-.+++.|++|.+.++.+++++.+.
T Consensus 68 ~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~a 108 (207)
T PRK11475 68 RMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQE 108 (207)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHH
Confidence 45777665544444433344489999999999999877643
No 322
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=27.60 E-value=82 Score=32.32 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=32.6
Q ss_pred eehhhhhhcccCCCceEEE-EcCCH------HHHHHHHHHh--hcccCeEEEecCCHHHHH
Q 015764 146 IPAENIVASFQGSGKTVFA-ISKTP------SEAQIFLEAL--EQGLGGIVLKVEDVKAVL 197 (401)
Q Consensus 146 IPlENliA~~q~~~~~l~a-~v~~~------~eA~~al~~L--E~G~DGVvl~~~d~~ev~ 197 (401)
++..+++++++..+-.|++ .+++. .++..+...+ +.|+|||+ ||.|+.+.
T Consensus 290 ~~~~~~v~~ah~~Gl~V~~WTVn~~~~~~~~~d~~~~~~~~~~~~GVDGIi--TD~P~~~~ 348 (355)
T PRK11143 290 IKLTGMVKEAHQAKLVVHPYTVRADQLPEYATDVNQLYDILYNQAGVDGVF--TDFPDKAV 348 (355)
T ss_pred cChHHHHHHHHHcCCEEEEEEeccccchhhhcChHHHHHHHHHccCCCEEE--cCChHHHH
Confidence 3445899999887777655 44431 1233333333 88999999 88888665
No 323
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=27.28 E-value=2.2e+02 Score=30.92 Aligned_cols=135 Identities=20% Similarity=0.260 Sum_probs=84.6
Q ss_pred eCchhHhHHHHHhCCcEEEEcC-cchhhHhhccceeeeeeeeecCCccccCC-CCeeEEEEEecChhhhhhhccccCCCC
Q 015764 57 TESKQVMTAAVERGWNTFVFLS-ENQQLAIDWSTIALLDPLFIKEGEVYDSG-DRRVGSIIEVSTPQELQQLQPADGQAE 134 (401)
Q Consensus 57 ~~~K~~vt~AlEsG~~~~v~~~-~~~~~~~~~~~i~~i~~l~~~~g~~~~~~-gk~v~~~~~v~~~e~~e~~~~~~~~~~ 134 (401)
+.||+-+..++|-|+|.+-... .+.+.+++..++ +.+. |..+.++.+|..++-++.+..-....|
T Consensus 175 eKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~-------------l~~~~~~~~~iiaKIE~~eav~NldeIi~~SD 241 (477)
T COG0469 175 EKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREI-------------LAETGGRDVKIIAKIENQEAVDNLDEIIEASD 241 (477)
T ss_pred ccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHH-------------HHHhCCCCceEEEeecCHHHHhHHHHHHHhcC
Confidence 3579999999999999544332 123333333322 1111 333667778999998888777666678
Q ss_pred eEEEeCCCCee-eehhhhhh-------cccCCCceEEEE-----------cCCHHHHHHHHHHhhcccCeEEEecCC---
Q 015764 135 NIVIDLPDWQV-IPAENIVA-------SFQGSGKTVFAI-----------SKTPSEAQIFLEALEQGLGGIVLKVED--- 192 (401)
Q Consensus 135 ~vvv~~~DW~i-IPlENliA-------~~q~~~~~l~a~-----------v~~~~eA~~al~~LE~G~DGVvl~~~d--- 192 (401)
-+.|--.|--+ ||+|++.. .....+.-++.. ..+-.|+--.+.+---|+|+|+|.-+.
T Consensus 242 GIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G 321 (477)
T COG0469 242 GIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAG 321 (477)
T ss_pred ceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcC
Confidence 88886556554 78887643 222222222221 234466666788888899999999875
Q ss_pred ---HHHHHHHHHhhc
Q 015764 193 ---VKAVLALKEYFD 204 (401)
Q Consensus 193 ---~~ev~~l~~~~~ 204 (401)
.+.|+-+..++.
T Consensus 322 ~yPveaV~~M~~I~~ 336 (477)
T COG0469 322 KYPVEAVATMARIAK 336 (477)
T ss_pred CCHHHHHHHHHHHHH
Confidence 356666666654
No 324
>PRK04132 replication factor C small subunit; Provisional
Probab=27.27 E-value=1.4e+02 Score=34.66 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCCeeEEeeeeE-EEeccceeEEEEEecCCCCeEEEEEeEecce-EEEecCCCCCCCCCceeeeeecCCCC
Q 015764 300 GKEVIVVDQKGRQRTAVVGRV-KIESRPLILVEAKTNSGDQTLYGIILQNAET-VALVSPCKGTGEQEKAIPVTSLKVGD 377 (401)
Q Consensus 300 G~eVLvVd~~G~tR~~~VGRv-KIE~RPLlLVeAe~~~~~G~~~sviLQnAET-IRLv~p~~g~~~~g~~vsVt~LK~GD 377 (401)
|-.|+.+|.+|+-+...+.+| |....|++.|..+. |..+.+. ++| +....++|. -..+..-+||+||
T Consensus 89 ~i~V~slde~gkl~~~~v~~v~k~g~~~v~rI~t~~----G~el~~T---~~Hp~lv~~~~g~----~~W~~a~eL~~GD 157 (846)
T PRK04132 89 GLKVLGIDEDGKLREFEVQYVYKDKTNRLIKIKTRL----GRELKVT---PYHPLLVNRKNGE----IKWVKAEELKPGD 157 (846)
T ss_pred cceEEeecCCCceeecchhhhhhcCCceEEEEEeCC----CcEEEec---CCceEEEeccCCc----eeeEEHhHcCCCC
Confidence 567999999998877666543 44568999988865 6654432 111 112224421 1467889999999
Q ss_pred EEEEE
Q 015764 378 EVLLR 382 (401)
Q Consensus 378 ~VL~~ 382 (401)
.|.+.
T Consensus 158 ~vavp 162 (846)
T PRK04132 158 KLAIP 162 (846)
T ss_pred EEEec
Confidence 99875
No 325
>PF04203 Sortase: Sortase family; InterPro: IPR005754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C60 (clan C-) and include the members of both subfamilies of sortases. The Staphylococcus aureus sortase is a transpeptidase that attaches surface proteins to the cell wall; it cleaves between the Gly and Thr of the LPXTG motif and catalyses the formation of an amide bond between the carboxyl-group of threonine and the amino-group of the cell-wall peptidoglycan []. Sortase homologues are found in almost all Gram-positives, a single Gram-negative (Shewanella putrefaciens) and an archaean (Methanobacterium thermoautotrophicum), where cell wall LPXTG-mediated decoration has not been reported [, ]. Surface proteins not only promote interaction between the invading pathogen and animal tissues, but also provide ingenious strategies for bacterial escape from the host's immune response. In the case of S. aureus protein A, immunoglobulins are captured on the microbial surface and camouflage bacteria during the invasion of host tissues. S. aureus mutants lacking the srtA gene fail to anchor and display some surface proteins and are impaired in the ability to cause animal infections. Sortase acts on surface proteins that are initiated into the secretion (Sec) pathway and have their signal peptide removed by signal peptidase. The S. aureus genome encodes two sets of sortase and secretion genes. It is conceivable that S. aureus has evolved more than one pathway for the transport of 20 surface proteins to the cell wall envelope. ; PDB: 2W1K_A 2OQZ_A 1RZ2_A 2OQW_A 1T2W_A 1IJA_A 1T2P_A 1T2O_C 2KID_A 3RCC_N ....
Probab=27.07 E-value=80 Score=26.55 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.7
Q ss_pred cCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEE
Q 015764 287 PGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVK 321 (401)
Q Consensus 287 pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvK 321 (401)
.+..-+.|.+++.||+|.+.+.+|+..+--|=+++
T Consensus 51 ~~~~F~~L~~~~~gd~i~~~~~~g~~~~Y~V~~~~ 85 (128)
T PF04203_consen 51 GGAMFSNLNKLKKGDEIYLTTPDGKTYEYRVTSVK 85 (128)
T ss_dssp TSSTTCGGGGGHTT-EEEEEETSSEEEEEEEEEEE
T ss_pred CCcccccccccCCCCEEEEEEecCEEEEEEEEEEE
Confidence 45556779999999999999999988666555555
No 326
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=27.04 E-value=99 Score=31.30 Aligned_cols=54 Identities=7% Similarity=0.157 Sum_probs=37.1
Q ss_pred CCeeeehhhhhhcccCCCceEEEE-cCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHHH
Q 015764 142 DWQVIPAENIVASFQGSGKTVFAI-SKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALKE 201 (401)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~a~-v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~~ 201 (401)
+|+.+- +.++++++..+-++.+- |++.++++.++ +.|+|||+ ||.|+.+.++..
T Consensus 229 ~~~~l~-~~~v~~a~~~Gl~V~vWTVNd~~~~~~l~---~~GVDgIi--TD~P~~l~~~~~ 283 (316)
T cd08610 229 AYKKLF-SNDIRDYKAANIHTNVYVINEPWLFSLAW---CSGIHSVT--TNNIHLLKQLDH 283 (316)
T ss_pred chhhCC-HHHHHHHHHCCCEEEEECCCCHHHHHHHH---hCCcCEEE--eCCHHHHHHhhc
Confidence 455554 56778877776666654 78888877554 57999976 788886655443
No 327
>PLN02363 phosphoribosylanthranilate isomerase
Probab=26.95 E-value=5.4e+02 Score=25.45 Aligned_cols=119 Identities=11% Similarity=0.087 Sum_probs=60.5
Q ss_pred EEEEe---CchhHhHHHHHhCCc--EEEEcCcc-----hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhh
Q 015764 53 VWIWT---ESKQVMTAAVERGWN--TFVFLSEN-----QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQE 122 (401)
Q Consensus 53 vWiw~---~~K~~vt~AlEsG~~--~~v~~~~~-----~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~ 122 (401)
.||.- .+.+-+..|.+.|+| +|||.+.. .+.++++.+. +.+ ..-+.|+++ .=.++++
T Consensus 47 ~~VKICGit~~eda~~a~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~--l~~----------~~~~~VgVf-v~~~~~~ 113 (256)
T PLN02363 47 PLVKMCGITSARDAAMAVEAGADFIGMILWPKSKRSISLSVAKEISQV--ARE----------GGAKPVGVF-VDDDANT 113 (256)
T ss_pred ceEEECCCCcHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHh--ccc----------cCccEEEEE-eCCCHHH
Confidence 35644 588999999999999 58875543 3555555442 111 012345553 2234555
Q ss_pred hhhhccccCCCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcC--CHHHHHHHHHH-hhcccCeEEEecC
Q 015764 123 LQQLQPADGQAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISK--TPSEAQIFLEA-LEQGLGGIVLKVE 191 (401)
Q Consensus 123 ~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~--~~~eA~~al~~-LE~G~DGVvl~~~ 191 (401)
+..++... ..+.|-+++.-. ...++.+.. ..+++..++ +..+.-..+.. .+..+|.+||++.
T Consensus 114 I~~~~~~~-~ld~VQLHG~e~-----~~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~ 178 (256)
T PLN02363 114 ILRAADSS-DLELVQLHGNGS-----RAAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSA 178 (256)
T ss_pred HHHHHHhc-CCCEEEECCCCC-----HHHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCC
Confidence 55554433 457888876421 122333321 123443332 22221111111 1235899999975
No 328
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=26.90 E-value=1.4e+02 Score=27.13 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=20.7
Q ss_pred CcEEEEEeC-chhHhHHHHHhCCcEEEEcCc
Q 015764 50 PKRVWIWTE-SKQVMTAAVERGWNTFVFLSE 79 (401)
Q Consensus 50 ~K~vWiw~~-~K~~vt~AlEsG~~~~v~~~~ 79 (401)
...+.+-.. ..+.+..+.+.|+|++.+..+
T Consensus 63 ~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 63 PLDVHLMVENPDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred cEEEEeeeCCHHHHHHHHHHcCCCEEEEeec
Confidence 334655553 344678888999999888764
No 329
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=26.77 E-value=2.1e+02 Score=25.16 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
..+.++++..-... .--+++..++. ....++... ...+......+++.|+|+++.+|-++.++.+..
T Consensus 44 ~~dlvild~~~~~~-~g~~~~~~lr~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i 112 (227)
T PRK09836 44 DYDLIILDIMLPDV-NGWDIVRMLRSANKGMPILLLT-ALGTIEHRVKGLELGADDYLVKPFAFAELLARV 112 (227)
T ss_pred CCCEEEEECCCCCC-CHHHHHHHHHhcCCCCCEEEEE-cCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 46777774332221 11223333332 234455443 334556677899999999999999988775443
No 330
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=26.31 E-value=96 Score=31.99 Aligned_cols=35 Identities=9% Similarity=-0.022 Sum_probs=28.1
Q ss_pred CCcEEEEEe-CchhHhHHHHHhCCcEEEEcCcchhhHh
Q 015764 49 KPKRVWIWT-ESKQVMTAAVERGWNTFVFLSENQQLAI 85 (401)
Q Consensus 49 ~~K~vWiw~-~~K~~vt~AlEsG~~~~v~~~~~~~~~~ 85 (401)
....|++|| .+++.|...++.|+|+++.+. .++..
T Consensus 222 ~Gl~V~vWTVN~~~~~~~l~~~GVdgIiTD~--P~~l~ 257 (351)
T cd08608 222 SNLSVNLYTVNEPWLYSLLWCSGVPSVTSDA--SHVLR 257 (351)
T ss_pred CCCEEEEEecCCHHHHHHHHHCCCCEEEECC--HHHHH
Confidence 566799999 568999999999999999865 34444
No 331
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=26.22 E-value=6.6e+02 Score=25.00 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=49.3
Q ss_pred EEEEecChhhhhhhccccCCCCeEEEeCCCCe--eeeh---hhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCe
Q 015764 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQ--VIPA---ENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGG 185 (401)
Q Consensus 113 ~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~--iIPl---ENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DG 185 (401)
++++|.+.+|++.+... .++.+-|+-+|-+ .+.+ ++|...+.. +.-+++ ..++.+|++.+.. ++||
T Consensus 154 ~LVEVh~~~El~~a~~~--ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~-~~~~IsESGI~t~~d~~~l~~----~~da 226 (247)
T PRK13957 154 VLVEVHTEDEAKLALDC--GAEIIGINTRDLDTFQIHQNLVEEVAAFLPP-NIVKVGESGIESRSDLDKFRK----LVDA 226 (247)
T ss_pred eEEEECCHHHHHHHHhC--CCCEEEEeCCCCccceECHHHHHHHHhhCCC-CcEEEEcCCCCCHHHHHHHHH----hCCE
Confidence 67899999998886653 5677888877654 3333 445555432 223343 4678899888653 3999
Q ss_pred EEE-----ecCCHHH
Q 015764 186 IVL-----KVEDVKA 195 (401)
Q Consensus 186 Vvl-----~~~d~~e 195 (401)
||+ +.+||.+
T Consensus 227 vLvG~~lm~~~d~~~ 241 (247)
T PRK13957 227 ALIGTYFMEKKDIRK 241 (247)
T ss_pred EEECHHHhCCCCHHH
Confidence 987 4455543
No 332
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=26.21 E-value=2e+02 Score=26.82 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=53.3
Q ss_pred CceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCCCCcee
Q 015764 289 GKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGEQEKAI 368 (401)
Q Consensus 289 gkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~~~~g~~v 368 (401)
+...+++=.+-||-|.+ .++...+||..+| +.||+.++ +......-+=+.-..-.|..|. .|+|.
T Consensus 62 d~v~F~~Pv~vGd~v~~-----~a~v~~~GrTSm~----V~Vev~~~--~~~~~~~~~~t~~~ft~VAvd~----~gkP~ 126 (157)
T COG1607 62 DSVDFKKPVRVGDIVCL-----YARVVYTGRTSME----VGVEVWAE--DIRSGERRLATSAYFTFVAVDE----DGKPT 126 (157)
T ss_pred ceEEEccccccCcEEEE-----EEEEeecCcccEE----EEEEEEEe--cccCCcceEeeeEEEEEEEECC----CCCcc
Confidence 55677788899999999 5889999999998 46777774 2222222222334455666663 27899
Q ss_pred eeeecCCCCEEE
Q 015764 369 PVTSLKVGDEVL 380 (401)
Q Consensus 369 sVt~LK~GD~VL 380 (401)
+|-.+.+.++.-
T Consensus 127 ~vp~~~~~~~~e 138 (157)
T COG1607 127 PVPREEPETEEE 138 (157)
T ss_pred cCCccCCccHHH
Confidence 999999988743
No 333
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=26.17 E-value=1.4e+02 Score=27.88 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=51.2
Q ss_pred hhhhhhcccCCC--ceEEEEcCC-HHHHHHHHHHhhcccCeEEEecCCHH-------------HHHHHHHhhcccccccc
Q 015764 148 AENIVASFQGSG--KTVFAISKT-PSEAQIFLEALEQGLGGIVLKVEDVK-------------AVLALKEYFDGRNEVSN 211 (401)
Q Consensus 148 lENliA~~q~~~--~~l~a~v~~-~~eA~~al~~LE~G~DGVvl~~~d~~-------------ev~~l~~~~~~~~~~~~ 211 (401)
.++++..+.... .++.+-+.+ .++++. +.+.|+|.|-+.-.-.+ .+..+.+.++..+...-
T Consensus 53 ~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~---a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQALVRNREKGIER---ALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred HHHHHHHHHhccCCcEEEEEccCchhhHHH---HHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344555554443 567677777 555554 45678998876654221 23333344433333334
Q ss_pred eeeeeEEEEEE--------------EEEcCCcceEEE-eecCCCCCCc
Q 015764 212 LLSLMKATVTR--------------VDVAGMGDRVCV-DLCSLMRPGE 244 (401)
Q Consensus 212 ~l~L~~atVt~--------------V~~vGmGDRVCV-Dtcsll~~GE 244 (401)
.+.+....+++ +...| -|++|+ ||...+.|.+
T Consensus 130 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P~~ 176 (265)
T cd03174 130 EVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLKDTVGLATPEE 176 (265)
T ss_pred eEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEechhcCCcCHHH
Confidence 45555555665 33455 456665 8877777755
No 334
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.11 E-value=4.2e+02 Score=24.59 Aligned_cols=77 Identities=13% Similarity=0.026 Sum_probs=46.2
Q ss_pred EEEecChhhhhhhcccc--CCCCeEEEeCCCCeeeehhhhhhcccCCC--ceE-EEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 114 IIEVSTPQELQQLQPAD--GQAENIVIDLPDWQVIPAENIVASFQGSG--KTV-FAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 114 ~~~v~~~e~~e~~~~~~--~~~~~vvv~~~DW~iIPlENliA~~q~~~--~~l-~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
.+...++++...++... +....+-+..+++.- .++++.+.... ..+ ...+-+.++++.+ ++.|+|||++
T Consensus 17 v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A---~~~gAdgv~~ 90 (187)
T PRK07455 17 VIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKLPECIIGTGTILTLEDLEEA---IAAGAQFCFT 90 (187)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhCCCcEEeEEEEEcHHHHHHH---HHcCCCEEEC
Confidence 34555666655544433 457777777666643 34444333222 222 2355566888877 5679999999
Q ss_pred ecCCHHHH
Q 015764 189 KVEDVKAV 196 (401)
Q Consensus 189 ~~~d~~ev 196 (401)
.-.|++.+
T Consensus 91 p~~~~~~~ 98 (187)
T PRK07455 91 PHVDPELI 98 (187)
T ss_pred CCCCHHHH
Confidence 98887654
No 335
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=26.07 E-value=5e+02 Score=24.94 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=44.8
Q ss_pred CCCeeEEEEEecChhhhhhhccccC--CCCeEEEeCCCCeee----------ehhhhhhcccCC-CceEEEEcC---CHH
Q 015764 107 GDRRVGSIIEVSTPQELQQLQPADG--QAENIVIDLPDWQVI----------PAENIVASFQGS-GKTVFAISK---TPS 170 (401)
Q Consensus 107 ~gk~v~~~~~v~~~e~~e~~~~~~~--~~~~vvv~~~DW~iI----------PlENliA~~q~~-~~~l~a~v~---~~~ 170 (401)
.++++.+.+--.++++..+++..+. .++.+-+++.-+..- .+..++.++... +.-|+.... +.+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 3556555444446777766665543 368888876544321 133455554432 222444333 333
Q ss_pred HHHHHHH-HhhcccCeEEEec
Q 015764 171 EAQIFLE-ALEQGLGGIVLKV 190 (401)
Q Consensus 171 eA~~al~-~LE~G~DGVvl~~ 190 (401)
|....+. +.+.|+|+|.+..
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 177 DIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEc
Confidence 4444444 4567899998864
No 336
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.00 E-value=6.7e+02 Score=25.01 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=71.7
Q ss_pred HHHHHHHHhhcccccccceeeeeEEEEEEEEEcCCcceEEEeecCCCCCCceE--------EEe-------ccCceEEEE
Q 015764 194 KAVLALKEYFDGRNEVSNLLSLMKATVTRVDVAGMGDRVCVDLCSLMRPGEGL--------LVG-------SFARGLFLV 258 (401)
Q Consensus 194 ~ev~~l~~~~~~~~~~~~~l~L~~atVt~V~~vGmGDRVCVDtcsll~~GEGm--------LVG-------S~s~glFLV 258 (401)
.|-.+|++.+..... ..... ..|+|....+-..-+.+-||--+.=.--.|| ||| ++|.-+.|.
T Consensus 98 ~EN~rLr~LL~~~~~-~~~~~-i~A~Vi~r~~~~~~~~i~IdkGs~dGV~~g~~Vi~~~~GLVG~V~~V~~~~S~V~lit 175 (283)
T TIGR00219 98 QENVRLRELLNSPLS-SDEYK-ISAEVIYLNYDNYSTQVVINKGFNDGVYKDMPVIADGKGLVGKVVSVGSNTSRVLLLT 175 (283)
T ss_pred HHHHHHHHHhcCccc-ccCCc-eEEEEEEeCCCccccEEEEcCccccCCCCCCEEEcCCCceEEEEEEECCCeEEEEEEE
Confidence 466778887754322 22223 8999999999999999999977654433333 444 334444444
Q ss_pred eeccccCCCCCCCCeeeecCCceeEEEecC-Cc---e--eee---eeccCCCeEEEEcCCCCeeE-EeeeeEE
Q 015764 259 HSECLESNYIASRPFRVNAGPVHAYVLVPG-GK---T--CYL---SELKSGKEVIVVDQKGRQRT-AVVGRVK 321 (401)
Q Consensus 259 hsEt~es~Yva~RPFRVNAGaVHaYv~~pg-gk---T--~YL---SEL~sG~eVLvVd~~G~tR~-~~VGRvK 321 (401)
+..+ .=|.++.-.-.++.+.--+ |. . .|+ ++++.||.|+.-+.+|..=. .+||+|+
T Consensus 176 d~~~-------~v~v~v~~t~~~gi~~G~~~g~~~~l~l~~~~~~~~v~~GD~VvTSGlgg~fP~Gl~VG~V~ 241 (283)
T TIGR00219 176 DYTN-------FVPAQILRSDFRGLIEGNGYGKTLEMNLVNRPAEKDIKKGDLIVTSGLGGRFPEGYPIGVVT 241 (283)
T ss_pred cCCC-------ceEEEEecCCceEEEEecCCCCCcEEEEEECCCCCCCCCCCEEEECCCCCcCCCCCEEEEEE
Confidence 3221 2245554443444333221 22 2 233 46899999999888886554 7899986
No 337
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.98 E-value=83 Score=29.46 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCcEEEEEeC-chhHhHHHHHhCCcEEEEcC
Q 015764 48 SKPKRVWIWTE-SKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 48 ~~~K~vWiw~~-~K~~vt~AlEsG~~~~v~~~ 78 (401)
++.+.+++|+- +.+.+..+++.|+|+|+.+.
T Consensus 229 ~~G~~v~vwtvn~~~~~~~~~~~Gvdgi~TD~ 260 (263)
T cd08567 229 ALGLKVVPWTVNDPEDMARLIDLGVDGIITDY 260 (263)
T ss_pred HCCCEEEEecCCCHHHHHHHHHcCCCEEEcCC
Confidence 34577899994 57788889999999988754
No 338
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.88 E-value=2.1e+02 Score=29.81 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=64.6
Q ss_pred EEEEe---CchhHhHHHHHhCCcEEEEcCc-----chhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhh
Q 015764 53 VWIWT---ESKQVMTAAVERGWNTFVFLSE-----NQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQ 124 (401)
Q Consensus 53 vWiw~---~~K~~vt~AlEsG~~~~v~~~~-----~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e 124 (401)
++++. ...+.+..++|.|+|.+.+... |......|..+..+ ++.-+.++.. ..|.++++..
T Consensus 134 v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~----------ik~~~ipVIa-G~V~t~e~A~ 202 (368)
T PRK08649 134 VAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEF----------IYELDVPVIV-GGCVTYTTAL 202 (368)
T ss_pred EEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHH----------HHHCCCCEEE-eCCCCHHHHH
Confidence 45553 3578999999999999888431 11111122222111 1111233322 4688888866
Q ss_pred hhccccCCCCeEEEeCCCCe-----------eeehhhhhhcc-----------cCCCceEEEE--cCCHHHHHHHHHHhh
Q 015764 125 QLQPADGQAENIVIDLPDWQ-----------VIPAENIVASF-----------QGSGKTVFAI--SKTPSEAQIFLEALE 180 (401)
Q Consensus 125 ~~~~~~~~~~~vvv~~~DW~-----------iIPlENliA~~-----------q~~~~~l~a~--v~~~~eA~~al~~LE 180 (401)
.+.. ..+|.|++- .... -+|.--.|++. .+.+..|||. .++..|+ ..+|.
T Consensus 203 ~l~~--aGAD~V~VG-~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~di---akAla 276 (368)
T PRK08649 203 HLMR--TGAAGVLVG-IGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDI---AKAIA 276 (368)
T ss_pred HHHH--cCCCEEEEC-CCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHH---HHHHH
Confidence 6654 467777763 2221 14532222221 1113456664 4455554 55566
Q ss_pred cccCeEEEecC
Q 015764 181 QGLGGIVLKVE 191 (401)
Q Consensus 181 ~G~DGVvl~~~ 191 (401)
.|+|+|++-+-
T Consensus 277 lGAd~Vm~Gs~ 287 (368)
T PRK08649 277 CGADAVMLGSP 287 (368)
T ss_pred cCCCeecccch
Confidence 79999998664
No 339
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.78 E-value=1.3e+02 Score=28.42 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=34.0
Q ss_pred CCeeeehhhhhhcccCCCceEE-EEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 015764 142 DWQVIPAENIVASFQGSGKTVF-AISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (401)
Q Consensus 142 DW~iIPlENliA~~q~~~~~l~-a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~ 197 (401)
+|+.+. +.++..++..+-.++ -.|++.++++.+ ++.|+|||+ ||.|+...
T Consensus 196 ~~~~~~-~~~v~~~~~~G~~v~vWTVN~~~~~~~l---~~~gVdgIi--TD~p~~~~ 246 (249)
T cd08561 196 GVPLVT-PRFVRAAHAAGLEVHVWTVNDPAEMRRL---LDLGVDGII--TDRPDLLL 246 (249)
T ss_pred CeecCC-HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--cCCHHHHH
Confidence 344443 477777777666665 456888777765 578999976 67777554
No 340
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=25.74 E-value=1e+02 Score=32.13 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=32.2
Q ss_pred CCCCeEEEeCCCCe------eeehhhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEe
Q 015764 131 GQAENIVIDLPDWQ------VIPAENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLK 189 (401)
Q Consensus 131 ~~~~~vvv~~~DW~------iIPlENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~ 189 (401)
..++.++++.+-.. --+.+||....+..+..|++ .+.+.++|+. .++.|+|||+.-
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~---~~~aGaDgV~~G 216 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALH---LMRTGAAGVIVG 216 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHH---HHHcCCCEEEEC
Confidence 45888888632100 01223444444444567776 5666666654 456899999844
No 341
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=25.40 E-value=5.8e+02 Score=26.58 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=72.7
Q ss_pred EEEEEeCchhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccC
Q 015764 52 RVWIWTESKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADG 131 (401)
Q Consensus 52 ~vWiw~~~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~ 131 (401)
+|...+.+.+-...|.+-|+|.++... +.+..+++..+ ++ +++..+. +.+++.....+.
T Consensus 192 ~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~--~d-----------------~ii~tv~-~~~~~~~l~~l~ 250 (339)
T COG1064 192 EVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEI--AD-----------------AIIDTVG-PATLEPSLKALR 250 (339)
T ss_pred eEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhh--Cc-----------------EEEECCC-hhhHHHHHHHHh
Confidence 455677777777888888888877655 34444444332 11 2333445 888888777777
Q ss_pred CCCeEEEeCCCC----eeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHh-hcccCeEEEecCCHHHHH
Q 015764 132 QAENIVIDLPDW----QVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEAL-EQGLGGIVLKVEDVKAVL 197 (401)
Q Consensus 132 ~~~~vvv~~~DW----~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~L-E~G~DGVvl~~~d~~ev~ 197 (401)
....+++-+..- ..+|+-++|.. ...=.-..+.+..|.+.+|.-. |.++.-.+...-.+++|.
T Consensus 251 ~~G~~v~vG~~~~~~~~~~~~~~li~~---~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in 318 (339)
T COG1064 251 RGGTLVLVGLPGGGPIPLLPAFLLILK---EISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEIN 318 (339)
T ss_pred cCCEEEEECCCCCcccCCCCHHHhhhc---CeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHH
Confidence 777777766653 33667777764 1222233456677777776644 455555554455555554
No 342
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.26 E-value=2.1e+02 Score=28.66 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=44.8
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEe-EecceEEEecCCCCCC
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIIL-QNAETVALVSPCKGTG 362 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviL-QnAETIRLv~p~~g~~ 362 (401)
|.+|-|-|.| -|.+|..++.=+.+.-. ..++---..-.||+++ . +..++.+-+ .+.+.+.|.-.+
T Consensus 181 vsTptGSTAY--slSAGGPii~P~~~~~~-itPI~Phsl~~rplVl-----~--~~~~i~i~~~~~~~~~~l~~DG---- 246 (292)
T PRK03378 181 ISTPTGSTAY--SLSAGGPILTPSLDAIT-LVPMFPHTLSARPLVI-----D--SSSTIRLKFSPNRSDLEISCDS---- 246 (292)
T ss_pred EeCCCchHHh--HhhcCCceeCCCCCeEE-EEecccccCCCCCEEE-----C--CCCEEEEEEccCCCcEEEEECC----
Confidence 5667777877 24456554433322211 1222223344678776 1 233445533 223455555432
Q ss_pred CCCceeeeeecCCCCEEEEEecCC
Q 015764 363 EQEKAIPVTSLKVGDEVLLRVQGA 386 (401)
Q Consensus 363 ~~g~~vsVt~LK~GD~VL~~~~~~ 386 (401)
. ...+|++||+|.++....
T Consensus 247 ---~--~~~~l~~gd~i~i~~s~~ 265 (292)
T PRK03378 247 ---Q--IALPIQPGEEVLIRRSDY 265 (292)
T ss_pred ---c--eEEEcCCCcEEEEEECCC
Confidence 2 367899999998887654
No 343
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=25.14 E-value=4.1e+02 Score=22.22 Aligned_cols=63 Identities=24% Similarity=0.270 Sum_probs=31.8
Q ss_pred EEEEEcCCcceEEEeecCCC-C-------CCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCcee
Q 015764 221 TRVDVAGMGDRVCVDLCSLM-R-------PGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTC 292 (401)
Q Consensus 221 t~V~~vGmGDRVCVDtcsll-~-------~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~ 292 (401)
+.|-+..--+|+++|.-+.- . +|-|.+++.. ..-+. ..+==|.++..+++
T Consensus 6 atVvS~~~~~~~iiDaG~kals~d~~~~~~g~g~v~~~~-~~~~~------------------~~seEHg~l~~~~~--- 63 (94)
T PF14031_consen 6 ATVVSRPPPGRAIIDAGSKALSSDSGPPPPGFGRVVDHP-GLEVV------------------RLSEEHGILRLPDG--- 63 (94)
T ss_dssp EEEEEEECTTEEEES--CCCC-SCCGGGGCCCEEECCCC-CEEEE------------------EE-SS-EEEE-STT---
T ss_pred EEEecccCCCEEEECCceeeeeccCCCCccCCEEEeCCC-CcEEE------------------eeecceeEEECCCC---
Confidence 34444444499999987642 1 2344444422 22222 22334999999988
Q ss_pred eeeeccCCCeEEEE
Q 015764 293 YLSELKSGKEVIVV 306 (401)
Q Consensus 293 YLSEL~sG~eVLvV 306 (401)
...|+-||.|.++
T Consensus 64 -~~~~~vGd~v~ii 76 (94)
T PF14031_consen 64 -ADRLKVGDKVEII 76 (94)
T ss_dssp -GCGT-TT-EEEEE
T ss_pred -CCCCCCCCEEEEE
Confidence 3357999999875
No 344
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=25.14 E-value=5e+02 Score=28.50 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=72.1
Q ss_pred chhHhHHHHHhCCcEEEEcCcch-hhHhhccc----------------eeeeeeeeecCCc--------cccCCCCeeEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQ-QLAIDWST----------------IALLDPLFIKEGE--------VYDSGDRRVGS 113 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~-~~~~~~~~----------------i~~i~~l~~~~g~--------~~~~~gk~v~~ 113 (401)
.......+.+.|.+.++..+-.. ++...+.. ...++.++++|.. .+...|-.+.
T Consensus 617 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~- 695 (919)
T PRK11107 617 EQVLAEQLKQDGADACLSKPLSHTRLLPALLEPCHHKQPPLLPPTDESRLPLTVMAVDDNPANLKLIGALLEEQVEHVV- 695 (919)
T ss_pred chhhHHHHhhCCCceEECCCCCHHHHHHHHHHhhcccccccccccccccCCCeEEEEeCCHHHHHHHHHHHHHcCCEEE-
Confidence 45566778899999888776432 22222211 1122345666652 2344454332
Q ss_pred EEEecChhhhhhhccccCCCCeEEEeCCCCe--eeehhhhhhcc-cCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 114 IIEVSTPQELQQLQPADGQAENIVIDLPDWQ--VIPAENIVASF-QGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 114 ~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~--iIPlENliA~~-q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
...+.++.-.... ....|.++++..-+. -+-+-..+.+. ......+++.... .+......+++.|+|+++.+|
T Consensus 696 --~~~~~~~al~~~~-~~~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pii~lt~~-~~~~~~~~~~~~G~~~~l~KP 771 (919)
T PRK11107 696 --LCDSGHQAVEQAK-QRPFDLILMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAH-AMAGERERLLSAGMDDYLAKP 771 (919)
T ss_pred --EECCHHHHHHHHH-hCCCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCEEEEeCC-CCHHHHHHHHHcCCCeEeeCC
Confidence 3445444222222 234677888543222 12121222221 1223456665544 334556788999999999999
Q ss_pred CCHHHHHHH
Q 015764 191 EDVKAVLAL 199 (401)
Q Consensus 191 ~d~~ev~~l 199 (401)
-++.++...
T Consensus 772 ~~~~~L~~~ 780 (919)
T PRK11107 772 IDEAMLKQV 780 (919)
T ss_pred CCHHHHHHH
Confidence 998876543
No 345
>PRK04980 hypothetical protein; Provisional
Probab=24.84 E-value=56 Score=28.54 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.1
Q ss_pred eeecCCCCEEEEEecCCCcccce
Q 015764 370 VTSLKVGDEVLLRVQGAARHTGI 392 (401)
Q Consensus 370 Vt~LK~GD~VL~~~~~~gRHfG~ 392 (401)
-...+|||.+.++..++||.|+.
T Consensus 29 e~~~~~G~~~~V~~~e~g~~~c~ 51 (102)
T PRK04980 29 ESHFKPGDVLRVGTFEDDRYFCT 51 (102)
T ss_pred ccCCCCCCEEEEEECCCCcEEEE
Confidence 34689999999999999999974
No 346
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.76 E-value=63 Score=33.75 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=41.0
Q ss_pred ChhhhhhhccccC---CCCeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 015764 119 TPQELQQLQPADG---QAENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (401)
Q Consensus 119 ~~e~~e~~~~~~~---~~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (401)
.++|.+++..+.. ..|+++|+...=--.=.-+.|..+...-.++.-.+.|..-++.+...++.|+|+|-
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEE
Confidence 4577777776665 58999998763322223334444333222344444555555566667778999984
No 347
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=24.64 E-value=46 Score=34.34 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=28.9
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEE
Q 015764 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVE 331 (401)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVe 331 (401)
|--|.||.+|+.||+|.+-...|+.-... .-..+|++||=
T Consensus 183 G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp----~~~~~~iImIA 222 (367)
T PLN03115 183 GVCSNFLCDLKPGAEVKITGPVGKEMLMP----KDPNATIIMLA 222 (367)
T ss_pred eehHhhHhhCCCcCEEEEEeecCCceeCC----cCCCCCEEEEe
Confidence 44578999999999999988888652111 12357888874
No 348
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=24.60 E-value=77 Score=32.81 Aligned_cols=118 Identities=16% Similarity=0.247 Sum_probs=65.2
Q ss_pred hHhHHHHHhCCcEEEEcCcchhhHhhccceeeeee---eeecCC----------ccccCCCCeeEEEEEecChhhhhhhc
Q 015764 61 QVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDP---LFIKEG----------EVYDSGDRRVGSIIEVSTPQELQQLQ 127 (401)
Q Consensus 61 ~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~---l~~~~g----------~~~~~~gk~v~~~~~v~~~e~~e~~~ 127 (401)
+-.-++||.|-++++|++.-......+-.+ +++ +...+. ..++.-|..+ .+++..+.++++.+.
T Consensus 61 e~~la~Le~g~~a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v-~~~d~~d~~~l~~~l 137 (386)
T PF01053_consen 61 EQRLAALEGGEDALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLEELLPRFGVEV-TFVDPTDLEALEAAL 137 (386)
T ss_dssp HHHHHHHHT-SEEEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHHHCHHHTTSEE-EEESTTSHHHHHHHH
T ss_pred HHHHHHhhcccceeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhhhhhcccCcEE-EEeCchhHHHHHhhc
Confidence 444589999999999998754443322222 221 222222 2334445543 334444455544433
Q ss_pred cccCCCCeEEEeCC---CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccC
Q 015764 128 PADGQAENIVIDLP---DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLG 184 (401)
Q Consensus 128 ~~~~~~~~vvv~~~---DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~D 184 (401)
.. +.+.|.++.. ..+++.++.|.+.++..+ .+...|.|.=-.-..+..|+.|+|
T Consensus 138 ~~--~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g-~~~~vVDnT~atp~~~~pL~~GaD 194 (386)
T PF01053_consen 138 RP--NTKLVFLESPSNPTLEVPDLEAIAKLAKEHG-DILVVVDNTFATPYNQNPLELGAD 194 (386)
T ss_dssp CT--TEEEEEEESSBTTTTB---HHHHHHHHHHTT-T-EEEEECTTTHTTTC-GGGGT-S
T ss_pred cc--cceEEEEEcCCCcccccccHHHHHHHHHHhC-CceEEeeccccceeeeccCcCCce
Confidence 22 5667777764 578999999988776554 466667666555577889999998
No 349
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=24.47 E-value=2.4e+02 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=28.5
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
..++... +..+......+++.|+++++.+|.+..++.+..
T Consensus 73 ~~ii~lt-~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i 112 (221)
T PRK15479 73 LPVLLLT-ARSAVADRVKGLNVGADDYLPKPFELEELDARL 112 (221)
T ss_pred CCEEEEE-CCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHH
Confidence 3454443 334555667789999999999999988776543
No 350
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.41 E-value=2.7e+02 Score=26.73 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=39.6
Q ss_pred cChhhhhhhccccCCCCeEEEeCCCCe------eee-hhhhhhcccCCCceEEE--EcCCHHHHHHHHHHhhcccCeEEE
Q 015764 118 STPQELQQLQPADGQAENIVIDLPDWQ------VIP-AENIVASFQGSGKTVFA--ISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 118 ~~~e~~e~~~~~~~~~~~vvv~~~DW~------iIP-lENliA~~q~~~~~l~a--~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
.+|.++-+.-... ++.+++-..|=+ ..+ ++.+... ....+.+ .+++.+|++.++. .|+|+|++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~---~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYE---IGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHH---CCCCEEEE
Confidence 3666654433322 566666454422 122 2333332 2333444 6999999998865 49999999
Q ss_pred ecCCH
Q 015764 189 KVEDV 193 (401)
Q Consensus 189 ~~~d~ 193 (401)
.+.-.
T Consensus 102 Gtaa~ 106 (228)
T PRK04128 102 GTKAF 106 (228)
T ss_pred Cchhc
Confidence 76643
No 351
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=24.35 E-value=60 Score=33.43 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=26.4
Q ss_pred CCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEeccceeEEEE
Q 015764 288 GGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~-G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|--|.||++|+.||.|-+.-.. |..+ .- .-+.+|+++|=+
T Consensus 214 G~~S~~L~~l~~Gd~v~v~~~~~~~F~---lp--~~~~~piImIa~ 254 (406)
T cd06202 214 GVCSTWLNGLTPGDTVPCFVRSAPSFH---LP--EDPSVPVIMVGP 254 (406)
T ss_pred ccHHHHHHhCCCCCEEEEEEeeCCccC---CC--CCCCCCEEEEcC
Confidence 6678999999999999875332 2221 10 123589999844
No 352
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=24.25 E-value=1.2e+02 Score=26.54 Aligned_cols=67 Identities=10% Similarity=0.032 Sum_probs=39.1
Q ss_pred CCCeEEEeCCCCee-eehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQV-IPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~i-IPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..+.++++..-... -.--.++..++.. ...++... ...+......+++.|+|+++.+|.++.++.+.
T Consensus 44 ~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls-~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 113 (227)
T TIGR03787 44 LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLT-ARDSDFDTVSGLRLGADDYLTKDISLPHLLAR 113 (227)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEE-CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHH
Confidence 46777774321110 0112233443322 33455544 33555667788999999999999998877654
No 353
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.21 E-value=2.5e+02 Score=28.32 Aligned_cols=115 Identities=12% Similarity=0.084 Sum_probs=60.3
Q ss_pred hhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEec-ChhhhhhhccccCCCCeEEE
Q 015764 60 KQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVS-TPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~-~~e~~e~~~~~~~~~~~vvv 138 (401)
-..+..|-|+|+|++++++=-.|...++..... ..|-....++.-+ +.+-++.++......=|.+-
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~-------------~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs 178 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE-------------KHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVS 178 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH-------------HcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe
Confidence 346889999999999998522333333333211 1122222233333 34555555554322222222
Q ss_pred e--CCCCeee---ehhhhhhcccCCC-ceEE--EEcCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 139 D--LPDWQVI---PAENIVASFQGSG-KTVF--AISKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 139 ~--~~DW~iI---PlENliA~~q~~~-~~l~--a~v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
. .++=+.- ++..+|..+..-. ..++ -.+++.++|+.+.++ +|||++-+.
T Consensus 179 ~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~----ADGVIVGSA 235 (265)
T COG0159 179 RMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA----ADGVIVGSA 235 (265)
T ss_pred cccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh----CCeEEEcHH
Confidence 1 1122211 3667777665422 2233 247788887766555 999999876
No 354
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.00 E-value=3.9e+02 Score=25.59 Aligned_cols=102 Identities=10% Similarity=0.068 Sum_probs=58.3
Q ss_pred hhHhHHHHHhC-CcEEEEcCcc------hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCC
Q 015764 60 KQVMTAAVERG-WNTFVFLSEN------QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQ 132 (401)
Q Consensus 60 K~~vt~AlEsG-~~~~v~~~~~------~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~ 132 (401)
-+.+..|+++| ++.|.++..+ .++++++..+.. ..| +.+-|.+.-++ +... .
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~-------------~~g----v~liINd~~dl---A~~~-~ 87 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQ-------------EAG----AAALIAGDSRI---AGRV-K 87 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHH-------------HhC----CEEEEeCHHHH---HHHh-C
Confidence 46889999999 7999987543 123333333311 112 22335554332 2222 3
Q ss_pred CCeEEEeCCCCeeeehhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEec
Q 015764 133 AENIVIDLPDWQVIPAENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 133 ~~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
++-|=+...| .|++..-..+. ...++.. .++.++|+. +.+.|+|=|.+.|
T Consensus 88 adGVHLg~~d---~~~~~~r~~~~--~~~iiG~s~~~s~~~a~~---A~~~gaDYv~~Gp 139 (221)
T PRK06512 88 ADGLHIEGNL---AALAEAIEKHA--PKMIVGFGNLRDRHGAME---IGELRPDYLFFGK 139 (221)
T ss_pred CCEEEECccc---cCHHHHHHhcC--CCCEEEecCCCCHHHHHH---hhhcCCCEEEECC
Confidence 4555553223 46776666553 3467775 467777654 5679999999843
No 355
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=23.40 E-value=1.4e+02 Score=28.13 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=30.6
Q ss_pred hhhhhcccCCCceEEE-EcCCHHHHHHHHHHhhcccCeEEEecCCHHHHH
Q 015764 149 ENIVASFQGSGKTVFA-ISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVL 197 (401)
Q Consensus 149 ENliA~~q~~~~~l~a-~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~ 197 (401)
..++..++..+-++++ .+++.++++.+ ++.|+|||+ ||.|+.+.
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn~~~~~~~l---~~~Gvd~Ii--TD~p~~~~ 252 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVNEKADMIRL---INWGVDGMF--TNYPDRLK 252 (256)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHHHHH---HhcCCCEEE--eCCHHHHH
Confidence 5777788777766655 46667776654 567999977 66676554
No 356
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.37 E-value=3.5e+02 Score=28.76 Aligned_cols=120 Identities=12% Similarity=0.103 Sum_probs=67.8
Q ss_pred EEEEeCchhHhHHHHHhCCcEEEEcCcc---hhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccc
Q 015764 53 VWIWTESKQVMTAAVERGWNTFVFLSEN---QQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPA 129 (401)
Q Consensus 53 vWiw~~~K~~vt~AlEsG~~~~v~~~~~---~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~ 129 (401)
+++-.+..+.+.+.+|.|+|-++++.-+ ....+-+..|..--| +.. .+...|.+.++-..+...
T Consensus 148 vg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p------------~~~-vi~g~V~T~e~a~~l~~a 214 (404)
T PRK06843 148 VSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYP------------NLD-LIAGNIVTKEAALDLISV 214 (404)
T ss_pred EeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCC------------CCc-EEEEecCCHHHHHHHHHc
Confidence 3443356789999999999988876533 122222223322111 111 123368888876665542
Q ss_pred cCCCCeEEEeC-----------CCCeeee----hhhhhhcccCCCceEEEE--cCCHHHHHHHHHHhhcccCeEEEecC
Q 015764 130 DGQAENIVIDL-----------PDWQVIP----AENIVASFQGSGKTVFAI--SKTPSEAQIFLEALEQGLGGIVLKVE 191 (401)
Q Consensus 130 ~~~~~~vvv~~-----------~DW~iIP----lENliA~~q~~~~~l~a~--v~~~~eA~~al~~LE~G~DGVvl~~~ 191 (401)
.+|.|.+-- .+|- .| +..+-..++..+..|||. +++..|+. .+|..|+|+|++-+-
T Consensus 215 --GaD~I~vG~g~Gs~c~tr~~~g~g-~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~---KALalGA~aVmvGs~ 287 (404)
T PRK06843 215 --GADCLKVGIGPGSICTTRIVAGVG-VPQITAICDVYEVCKNTNICIIADGGIRFSGDVV---KAIAAGADSVMIGNL 287 (404)
T ss_pred --CCCEEEECCCCCcCCcceeecCCC-CChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH---HHHHcCCCEEEEcce
Confidence 577777631 1331 23 222223334446678875 56777765 456799999998654
No 357
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=23.34 E-value=4.2e+02 Score=25.44 Aligned_cols=103 Identities=15% Similarity=0.153 Sum_probs=55.6
Q ss_pred eeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEEeCCCCee---eehhhhhhcc-cCCCceEEE--EcCC
Q 015764 95 PLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVIDLPDWQV---IPAENIVASF-QGSGKTVFA--ISKT 168 (401)
Q Consensus 95 ~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~i---IPlENliA~~-q~~~~~l~a--~v~~ 168 (401)
.|.+.+|..+...... ......+|.++.+..... .++.+.+...|=.. =+--.++.++ +.....|.+ .+++
T Consensus 9 ~iD~~~G~~V~~~~~~--~~~~~~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s 85 (254)
T TIGR00735 9 CLDVRDGRVVKGVQFL--NLRDAGDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKS 85 (254)
T ss_pred EEEeECCEEEEeEeec--CceECCCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCC
Confidence 3566777665532111 012234676665555443 45666665443210 0111122222 112233444 8999
Q ss_pred HHHHHHHHHHhhcccCeEEEecC---CHHHHHHHHHhh
Q 015764 169 PSEAQIFLEALEQGLGGIVLKVE---DVKAVLALKEYF 203 (401)
Q Consensus 169 ~~eA~~al~~LE~G~DGVvl~~~---d~~ev~~l~~~~ 203 (401)
.++++.++. .|+++|++.+. ||+.++++.+.+
T Consensus 86 ~~d~~~~~~---~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 86 IEDVDKLLR---AGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred HHHHHHHHH---cCCCEEEEChhHhhChHHHHHHHHHc
Confidence 999998876 49999999885 566666555444
No 358
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=23.34 E-value=84 Score=30.36 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
|--|.||.+|+.||.|.+-...|..-... +-..+|+++|-+
T Consensus 83 G~~S~~L~~lk~Gd~v~v~~p~G~~f~l~----~~~~~~~vlIAg 123 (267)
T cd06182 83 GVCSNFLAGLQLGAKVTVFIRPAPSFRLP----KDPTTPIIMVGP 123 (267)
T ss_pred cchhHHHhhCCCCCEEEEEEecCCcccCC----CCCCCCEEEEec
Confidence 45699999999999999999888322210 112578888765
No 359
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.30 E-value=3.9e+02 Score=27.72 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=57.2
Q ss_pred hhHhHHHHHhCCcEEEEcCcch------hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCC
Q 015764 60 KQVMTAAVERGWNTFVFLSENQ------QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQA 133 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~------~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~ 133 (401)
-+.+..|++.|++.|.....+. +.++.+..+.. ..| +.+-|.+.-++... . .+
T Consensus 160 l~~l~~al~~Gv~~VQLR~K~~~~~~~~~~a~~L~~l~~-------------~~~----~~lIIND~vdlAl~---~-~a 218 (347)
T PRK02615 160 LEVVEAALKGGVTLVQYRDKTADDRQRLEEAKKLKELCH-------------RYG----ALFIVNDRVDIALA---V-DA 218 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHH-------------HhC----CeEEEeChHHHHHH---c-CC
Confidence 4579999999999998875432 33444444311 111 22335554432222 2 34
Q ss_pred CeEEEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 134 ENIVIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 134 ~~vvv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
+-|=+...| .|.+..-..+ +.+.-|-+.++|.+|++.+ ++.|+|-|.+
T Consensus 219 DGVHLgq~d---l~~~~aR~ll-g~~~iIG~S~Hs~~e~~~A---~~~GaDYI~l 266 (347)
T PRK02615 219 DGVHLGQED---LPLAVARQLL-GPEKIIGRSTTNPEEMAKA---IAEGADYIGV 266 (347)
T ss_pred CEEEeChhh---cCHHHHHHhc-CCCCEEEEecCCHHHHHHH---HHcCCCEEEE
Confidence 555554444 3554443322 3344566778888887554 5789999987
No 360
>PRK08999 hypothetical protein; Provisional
Probab=23.05 E-value=6.7e+02 Score=24.38 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=62.8
Q ss_pred hHhHHHHHhCCcEEEEcCcc---h---hhHhhccceeee--eeeeecCC-----------------ccc----c--CCCC
Q 015764 61 QVMTAAVERGWNTFVFLSEN---Q---QLAIDWSTIALL--DPLFIKEG-----------------EVY----D--SGDR 109 (401)
Q Consensus 61 ~~vt~AlEsG~~~~v~~~~~---~---~~~~~~~~i~~i--~~l~~~~g-----------------~~~----~--~~gk 109 (401)
+.+..|+++|++.+..+..+ . .+++++..+..- .+++++|. ++- . +.++
T Consensus 148 ~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind~~~la~~~~~~GvHl~~~d~~~~~~r~~~~~~ 227 (312)
T PRK08999 148 ARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNGDPELAEDLGADGVHLTSAQLAALAARPLPAGR 227 (312)
T ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECcHHHHHhcCCCEEEcChhhcChHhhccCCCCC
Confidence 56778999999999987543 2 233333333210 12333332 100 1 1233
Q ss_pred eeEEEEEecChhhhhhhccccCCCCeEEEeCC-------CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcc
Q 015764 110 RVGSIIEVSTPQELQQLQPADGQAENIVIDLP-------DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQG 182 (401)
Q Consensus 110 ~v~~~~~v~~~e~~e~~~~~~~~~~~vvv~~~-------DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G 182 (401)
.++. .+.+.++.+.+.. ..+||+.+..- +.+-.-++-+-...+..+..++|.-.= ..+.+-++++.|
T Consensus 228 ~ig~--S~h~~~~~~~a~~--~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI--~~~~~~~~~~~g 301 (312)
T PRK08999 228 WVAA--SCHDAEELARAQR--LGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL--GPGDLEEAREHG 301 (312)
T ss_pred EEEE--ecCCHHHHHHHHh--cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC--CHHHHHHHHHhC
Confidence 3443 3456666544432 25899988421 122222332222223345668877532 333445578889
Q ss_pred cCeEEEe
Q 015764 183 LGGIVLK 189 (401)
Q Consensus 183 ~DGVvl~ 189 (401)
+|||.+-
T Consensus 302 ~~gva~i 308 (312)
T PRK08999 302 AQGIAGI 308 (312)
T ss_pred CCEEEEE
Confidence 9999764
No 361
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=23.04 E-value=61 Score=34.67 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=47.3
Q ss_pred eEEEEEecChhhhhhhccccC-CCCeEEEeCCCCeeeehhhhhhcccCC--CceEEEEcCCHHHHHHHHHHhhcccCeEE
Q 015764 111 VGSIIEVSTPQELQQLQPADG-QAENIVIDLPDWQVIPAENIVASFQGS--GKTVFAISKTPSEAQIFLEALEQGLGGIV 187 (401)
Q Consensus 111 v~~~~~v~~~e~~e~~~~~~~-~~~~vvv~~~DW~iIPlENliA~~q~~--~~~l~a~v~~~~eA~~al~~LE~G~DGVv 187 (401)
++..+.+ .++..+++..+.. .++.++++..+-.-....++|+++... +.-|++ .+...++.+....+.|+|+|-
T Consensus 216 Vgaav~~-~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~--g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 216 IGAAVGI-NGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA--GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred ehheeee-CccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE--eccCCHHHHHHHHHhCCCEEE
Confidence 3444333 2344455544443 589999998876668888999988765 344555 444444445555678999997
No 362
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.88 E-value=2.9e+02 Score=27.55 Aligned_cols=85 Identities=14% Similarity=0.251 Sum_probs=51.3
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCC
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGE 363 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~~~ 363 (401)
|..|-|-|.| -|.+|..|+-=+.++= -..++---..-.||+++ . +..++.+-+...+.+.|+-.+
T Consensus 163 VsTPTGSTAY--slSAGGPIv~P~~~~~-~ltPI~Ph~l~~rplVl-----~--~~~~I~i~~~~~~~~~l~~DG----- 227 (271)
T PRK01185 163 VATPTGSTSY--SSSAGGPILLPNLEGM-VISYIAPYSSRPKSVVV-----P--SESTVEIKIAGDQSSLLILDG----- 227 (271)
T ss_pred EeCCCchHHH--HhhCCCceeCCCCCeE-EEEecccCCCCCCCEEE-----C--CCCEEEEEEcCCCCEEEEECC-----
Confidence 5678888888 4778887765444432 23344444555788865 2 234455544333345555433
Q ss_pred CCceeeeeecCCCCEEEEEecCCC
Q 015764 364 QEKAIPVTSLKVGDEVLLRVQGAA 387 (401)
Q Consensus 364 ~g~~vsVt~LK~GD~VL~~~~~~g 387 (401)
. ....|++||+|.++..+..
T Consensus 228 --~--~~~~l~~~d~i~i~~s~~~ 247 (271)
T PRK01185 228 --Q--YEYKISKGDTVEISKSENY 247 (271)
T ss_pred --C--ceEecCCCCEEEEEECCCe
Confidence 2 3567999999999876543
No 363
>PRK09206 pyruvate kinase; Provisional
Probab=22.79 E-value=1.8e+02 Score=31.33 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=56.4
Q ss_pred Chhhhhhhccc-cCCCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 015764 119 TPQELQQLQPA-DGQAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (401)
Q Consensus 119 ~~e~~e~~~~~-~~~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (401)
+.+|.+.+.-. ....|++-+.|- -=.|+.+-+++++..+.+..|++...+.+-.+-.=++++. +|||++.+.|.+
T Consensus 171 tekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~-~DgImVaRGDLg 248 (470)
T PRK09206 171 AEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEA-SDGIMVARGDLG 248 (470)
T ss_pred CHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHh-CCEEEECcchhh
Confidence 44444443221 235899999874 2337778888887544578999999999999999999999 999999999854
No 364
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=22.67 E-value=4.6e+02 Score=22.86 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=37.1
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccCC-CceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQGS-GKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~~-~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..|.++++..-...=.+ .++..++.. ...++..... .+......+++.|+++.+.+|-+..++.+.
T Consensus 44 ~~d~vl~d~~~~~~~g~-~~~~~l~~~~~~~ii~lt~~-~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~ 110 (232)
T PRK10955 44 SIDLLLLDVMMPKKNGI-DTLKELRQTHQTPVIMLTAR-GSELDRVLGLELGADDYLPKPFNDRELVAR 110 (232)
T ss_pred CCCEEEEeCCCCCCcHH-HHHHHHHhcCCCcEEEEECC-CCHHHHHHHHHcCCCEEEcCCCCHHHHHHH
Confidence 46777775332211111 222222221 2445554433 344556678899999999999998776543
No 365
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=22.62 E-value=4.7e+02 Score=22.90 Aligned_cols=67 Identities=15% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC--CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG--SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~--~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
..+.++++..-...-.+ .++..++. ....++.... ..+......+++.|+|+.+.+|-++.++.+.-
T Consensus 44 ~~dlvild~~l~~~~g~-~l~~~lr~~~~~~pii~ls~-~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i 112 (223)
T PRK10816 44 LPDIAIVDLGLPDEDGL-SLIRRWRSNDVSLPILVLTA-RESWQDKVEVLSAGADDYVTKPFHIEEVMARM 112 (223)
T ss_pred CCCEEEEECCCCCCCHH-HHHHHHHhcCCCCCEEEEEc-CCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHH
Confidence 46777774332221111 23333332 2344555443 34455567899999999999999988765433
No 366
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.60 E-value=2.6e+02 Score=28.09 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=50.0
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEecceEEEecCCCCCCC
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNAETVALVSPCKGTGE 363 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnAETIRLv~p~~g~~~ 363 (401)
|..|-|-|.| -|.+|..|+-=+.++=.-+ ++=--..-.||+++ . +..++.+-+.+...+.|.-.+
T Consensus 186 VsTPTGSTAY--slSAGGPIv~P~~~~~~it-PI~Phsl~~rplVl-----~--~~~~i~i~~~~~~~~~l~~DG----- 250 (296)
T PRK04539 186 VSTPTGSTAY--SLAAGGPIMQAGLHAFTLV-PICPQSMTNRPIAI-----P--DTSEIEILVTQGGDARVHFDG----- 250 (296)
T ss_pred EECCCcHHHH--HhhCCCceeCCCCCeEEEE-ecCcCcccCCCEEE-----C--CCCEEEEEEcCCCcEEEEEcC-----
Confidence 5678888888 4778887665444432222 22222234688876 2 234455544444556665533
Q ss_pred CCceeeeeecCCCCEEEEEecCCC
Q 015764 364 QEKAIPVTSLKVGDEVLLRVQGAA 387 (401)
Q Consensus 364 ~g~~vsVt~LK~GD~VL~~~~~~g 387 (401)
. ....|++||+|.++.....
T Consensus 251 --~--~~~~l~~~d~i~i~~s~~~ 270 (296)
T PRK04539 251 --Q--THIDVQNLDRITIRRYRNP 270 (296)
T ss_pred --C--ceeecCCCCEEEEEECCCc
Confidence 2 3678999999999876543
No 367
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=22.56 E-value=5.7e+02 Score=26.54 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=65.2
Q ss_pred CCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEEEeEec
Q 015764 270 SRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGIILQNA 349 (401)
Q Consensus 270 ~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sviLQnA 349 (401)
+-||.++...++.+. .+||..+.+.- ..-.-++...++++.++..-+.-.--.- .......+|+=.
T Consensus 211 ~~~~~~~~~~~~p~~-~~gG~~~~~~~----------~~~p~~~~~s~~~~~l~PG~~~~~H~H~---~~~E~~yvl~G~ 276 (367)
T TIGR03404 211 PGPFTYHLSEQKPKQ-VPGGTVRIADS----------TNFPVSKTIAAAIVTVEPGAMRELHWHP---NADEWQYFIQGQ 276 (367)
T ss_pred CccEEEEhhhCCcee-cCCceEEEECh----------hhccCcceEEEEEEEECCCCccCCeeCc---CCCeEEEEEEEE
Confidence 448999999999964 47888753222 1222234466778887776655444332 334577888877
Q ss_pred ceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCcccce
Q 015764 350 ETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAARHTGI 392 (401)
Q Consensus 350 ETIRLv~p~~g~~~~g~~vsVt~LK~GD~VL~~~~~~gRHfG~ 392 (401)
=.+.+..+++ . --+.+|++|| .+++..+..|+=.
T Consensus 277 ~~~~v~d~~g------~-~~~~~l~~GD--~~~iP~g~~H~i~ 310 (367)
T TIGR03404 277 ARMTVFAAGG------N-ARTFDYQAGD--VGYVPRNMGHYVE 310 (367)
T ss_pred EEEEEEecCC------c-EEEEEECCCC--EEEECCCCeEEEE
Confidence 7888877662 2 2367899999 5667788888533
No 368
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=22.51 E-value=77 Score=31.20 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=54.9
Q ss_pred eEEEEEEEEEcCCcc-eEEEeecC----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecC-----CceeEEE
Q 015764 216 MKATVTRVDVAGMGD-RVCVDLCS----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAG-----PVHAYVL 285 (401)
Q Consensus 216 ~~atVt~V~~vGmGD-RVCVDtcs----ll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAG-----aVHaYv~ 285 (401)
.+++|++++++.-.- ++.++.-. -+.||+=+.+- ... -..|||-+-.. -+.=+|.
T Consensus 103 ~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~---------~~~------~~~R~ySias~p~~~~~l~~~ik 167 (339)
T PRK07609 103 LPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFI---------LKD------GKRRSYSIANAPHSGGPLELHIR 167 (339)
T ss_pred EEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEE---------CCC------CceeeeecCCCCCCCCEEEEEEE
Confidence 467888888776432 23443221 24455533332 111 12477776433 3333343
Q ss_pred -ecCCc-eeee-eeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEE
Q 015764 286 -VPGGK-TCYL-SELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEA 332 (401)
Q Consensus 286 -~pggk-T~YL-SEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeA 332 (401)
.|+|. |.|| .+|+.||+|.+-...|+...- .-..+|+++|=+
T Consensus 168 ~~~~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~-----~~~~~~ivlIag 212 (339)
T PRK07609 168 HMPGGVFTDHVFGALKERDILRIEGPLGTFFLR-----EDSDKPIVLLAS 212 (339)
T ss_pred ecCCCccHHHHHHhccCCCEEEEEcCceeEEec-----CCCCCCEEEEec
Confidence 46665 6798 589999999998888865311 123578888753
No 369
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=22.48 E-value=4.6e+02 Score=23.05 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=39.7
Q ss_pred CCCeEEEeCCCCeeeehhhhhhcccC----CCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 132 QAENIVIDLPDWQVIPAENIVASFQG----SGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 132 ~~~~vvv~~~DW~iIPlENliA~~q~----~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
..+.++++..-...-.+ .++..++. ....++.... ..+......+++.|+++.+.+|-+..++.+.-
T Consensus 46 ~~dlvild~~l~~~~g~-~~~~~l~~~~~~~~~pvi~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i 116 (229)
T PRK10161 46 WPDLILLDWMLPGGSGI-QFIKHLKRESMTRDIPVVMLTA-RGEEEDRVRGLETGADDYITKPFSPKELVARI 116 (229)
T ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHhccccCCCCEEEEEC-CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHH
Confidence 46777775432222112 22233322 2334555443 34566778899999999999999988765443
No 370
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=22.33 E-value=1.3e+02 Score=26.93 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=39.3
Q ss_pred eeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEecccee
Q 015764 273 FRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLI 328 (401)
Q Consensus 273 FRVNAGaVH-----aYv~~pggkT~YLSEL~sG~eVLvVd~~-G~tR~~~VGRvKIE~RPLl 328 (401)
.-|+.|++. |-++.|| =+.+=.+++.||.|.|++.+ | +..-||++++-..-|.
T Consensus 72 v~Vd~~a~~~l~~Ga~lm~pG-V~~~~~~~~~Gd~V~I~~~~~~--~~vavG~a~~ss~ei~ 130 (150)
T TIGR03684 72 VVVDEGAVKFIINGADIMAPG-IVSADPSIKEGDIVFVVDETHR--KPLAVGIALMDAEEME 130 (150)
T ss_pred EEECccHHHHHhcCcccccCc-eecCCCCCCCCCEEEEEECCCC--eEEEEEEEeeCHHHHh
Confidence 667777665 4455544 34555689999999999976 6 5689999999887664
No 371
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=22.33 E-value=1.2e+02 Score=29.24 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=31.4
Q ss_pred hhhhhcccCCCceEEEE-c--CCHHHHHHHHHHhhcccCeEEEecCCHHHHHH
Q 015764 149 ENIVASFQGSGKTVFAI-S--KTPSEAQIFLEALEQGLGGIVLKVEDVKAVLA 198 (401)
Q Consensus 149 ENliA~~q~~~~~l~a~-v--~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~ 198 (401)
..+|..++..+-.+++- + ++.++++.+ ++.|+|||+ ||.|+.+.+
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l---~~~GVdgIi--TD~p~~~~~ 282 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVLNNDPENAKTQ---VKAGVDAVI--VDSVLAIRR 282 (286)
T ss_pred hHHHHHHHHCCcEEEEECCccCCHHHHHHH---HHcCCCEEE--ECCHHHHHH
Confidence 35677776666677664 4 777777654 467999977 888887654
No 372
>PLN02252 nitrate reductase [NADPH]
Probab=22.30 E-value=3.6e+02 Score=31.40 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=60.5
Q ss_pred eEEEEEEEEEcCCcc-eEEEeecC-----CCCCCceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEe---
Q 015764 216 MKATVTRVDVAGMGD-RVCVDLCS-----LMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLV--- 286 (401)
Q Consensus 216 ~~atVt~V~~vGmGD-RVCVDtcs-----ll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~--- 286 (401)
.+++|++++++.-.= +..+.+-+ -+.+|+=+.|.-. ...+....+|..+.+-. .-|-+.=.|..
T Consensus 635 ~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~------~~g~~~~R~YSpaS~~~-~~g~lel~VK~~~~ 707 (888)
T PLN02252 635 IPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCAT------INGKLCMRAYTPTSSDD-EVGHFELVIKVYFK 707 (888)
T ss_pred EEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEe------cCCeEEEeeeEecccCC-CCCEEEEEEEEEec
Confidence 468999999886443 33344322 2445554443311 11222234554332210 12334444433
Q ss_pred -------c-CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEe-----ccceeEEEE
Q 015764 287 -------P-GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIE-----SRPLILVEA 332 (401)
Q Consensus 287 -------p-ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE-----~RPLlLVeA 332 (401)
| |--|.||..|+.||+|.+-..-|+..-.-=|+..++ .||++||=+
T Consensus 708 ~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAG 766 (888)
T PLN02252 708 NVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAG 766 (888)
T ss_pred cccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEec
Confidence 2 668899999999999999999997532111233343 478888854
No 373
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=22.30 E-value=1.1e+02 Score=22.48 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=23.6
Q ss_pred CCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 015764 288 GGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 322 (401)
Q Consensus 288 ggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKI 322 (401)
.-+.+||+.++.||.+.+ +++..-+||-++
T Consensus 35 ~~~i~f~~p~~~gd~l~~-----~~~v~~~g~~~~ 64 (79)
T PF03061_consen 35 ELSIDFLRPVRPGDTLRV-----EARVVRVGRKSF 64 (79)
T ss_dssp EEEEEESS-BBTTSEEEE-----EEEEEEEESSEE
T ss_pred EEEEEEccccCCCeEEEE-----EEEEEEECCEEE
Confidence 678899999999999998 577777776553
No 374
>PLN02623 pyruvate kinase
Probab=22.26 E-value=1.1e+02 Score=34.11 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=49.2
Q ss_pred CCCeEEEeCC-C-CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 015764 132 QAENIVIDLP-D-WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (401)
Q Consensus 132 ~~~~vvv~~~-D-W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (401)
+.|++-+.|- + =.|..+-++++.. +.+..|++...+.+--+-.-++++ |+|||++.+.|.+
T Consensus 291 ~vD~ialSFVr~a~DV~~~r~~l~~~-~~~~~iiakIEt~eaVeNldeIl~-g~DgImIgrgDLg 353 (581)
T PLN02623 291 KVDFYAVSFVKDAQVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIIT-ASDGAMVARGDLG 353 (581)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHc-CCcceEEEEECCHHHHHhHHHHHH-hCCEEEECcchhh
Confidence 4777777764 1 2466777888774 456789999999999999999999 9999999999863
No 375
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=22.01 E-value=6.2e+02 Score=23.23 Aligned_cols=126 Identities=11% Similarity=0.066 Sum_probs=70.2
Q ss_pred chhHhHHHHHhCCcEEEEcCcchhhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeEEE
Q 015764 59 SKQVMTAAVERGWNTFVFLSENQQLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENIVI 138 (401)
Q Consensus 59 ~K~~vt~AlEsG~~~~v~~~~~~~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~vvv 138 (401)
...-+..|++.|++.|=++=- + .+-+.+ +..-|..+..-.|... .+.=.+-+++..+... .+
T Consensus 15 T~~af~~A~~~Gad~vE~DV~---~-T~Dg~~-----vv~HD~~l~r~t~~~~--~v~~~t~~el~~l~~~----~~--- 76 (220)
T cd08579 15 TLEALEAAIKAKPDYVEIDVQ---E-TKDGQF-----VVMHDANLKRLAGVNK--KVWDLTLEELKKLTIG----EN--- 76 (220)
T ss_pred HHHHHHHHHHcCCCEEEEEee---E-cCCCCE-----EEEcCCchhhccCCCC--ChhhCCHHHHhcCcCc----cC---
Confidence 367889999999998766421 0 111222 2223333221111110 0111233333332211 11
Q ss_pred eCCCCeeeehhhhhhcccCCCceEEEEcCCHH-----HHHHHHHHh-hccc-CeEEEecCCHHHHHHHHHhh
Q 015764 139 DLPDWQVIPAENIVASFQGSGKTVFAISKTPS-----EAQIFLEAL-EQGL-GGIVLKVEDVKAVLALKEYF 203 (401)
Q Consensus 139 ~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~-----eA~~al~~L-E~G~-DGVvl~~~d~~ev~~l~~~~ 203 (401)
+.+-++--||.+++.+.+.+..+.-+.++.. =++..+.++ +.|. +-|++.+-++..++.+++..
T Consensus 77 -~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~ 147 (220)
T cd08579 77 -GHGAKIPSLDEYLALAKGLKQKLLIELKPHGHDSPDLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLD 147 (220)
T ss_pred -CCCCcCCCHHHHHHHhhccCCeEEEEECCCCCCCHHHHHHHHHHHHHcCCCcCeEEEeCCHHHHHHHHHHC
Confidence 3455677799999998765667888888754 133344444 3453 67899999999888777654
No 376
>PRK07695 transcriptional regulator TenI; Provisional
Probab=21.92 E-value=6.2e+02 Score=23.15 Aligned_cols=103 Identities=10% Similarity=0.039 Sum_probs=55.8
Q ss_pred hhHhHHHHHhCCcEEEEcCcch---hhHhhccceeeeeeeeecCCccccCCCCeeEEEEEecChhhhhhhccccCCCCeE
Q 015764 60 KQVMTAAVERGWNTFVFLSENQ---QLAIDWSTIALLDPLFIKEGEVYDSGDRRVGSIIEVSTPQELQQLQPADGQAENI 136 (401)
Q Consensus 60 K~~vt~AlEsG~~~~v~~~~~~---~~~~~~~~i~~i~~l~~~~g~~~~~~gk~v~~~~~v~~~e~~e~~~~~~~~~~~v 136 (401)
.+... ++++|++.+.++..+. ++.+....+.. -|.. ...+-|.+.-++. ... ..+-+
T Consensus 18 ~~~~~-~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~--------------~~~~-~~~liin~~~~la---~~~-~~~gv 77 (201)
T PRK07695 18 VAVAM-QIHSEVDYIHIREREKSAKELYEGVESLLK--------------KGVP-ASKLIINDRVDIA---LLL-NIHRV 77 (201)
T ss_pred HHHHH-HHhCCCCEEEEcCCCCCHHHHHHHHHHHHH--------------hCCC-CCeEEEECHHHHH---HHc-CCCEE
Confidence 34554 8999999999986432 22111122111 1111 1123455554322 222 33455
Q ss_pred EEeCCCCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec
Q 015764 137 VIDLPDWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV 190 (401)
Q Consensus 137 vv~~~DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~ 190 (401)
-+...| .|++.+...+. +..|-+.+.+.++|+ .+.+.|+|-+++.+
T Consensus 78 Hl~~~~---~~~~~~r~~~~--~~~ig~s~~s~e~a~---~a~~~Gadyi~~g~ 123 (201)
T PRK07695 78 QLGYRS---FSVRSVREKFP--YLHVGYSVHSLEEAI---QAEKNGADYVVYGH 123 (201)
T ss_pred EeCccc---CCHHHHHHhCC--CCEEEEeCCCHHHHH---HHHHcCCCEEEECC
Confidence 554333 35565555442 346778888888865 46688999998754
No 377
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=21.75 E-value=3e+02 Score=21.04 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred ceEEEeccCceEEEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeee--ccCCCeEEEE
Q 015764 244 EGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSE--LKSGKEVIVV 306 (401)
Q Consensus 244 EGmLVGS~s~glFLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSE--L~sG~eVLvV 306 (401)
+|..+-+++.++|+|..+. . .-|..-+-|+.+ +.. +..||.|++-
T Consensus 4 ~G~Vi~~~~g~~~~V~~~~--g---------------~~~~c~~rGklr-~~~~~~~vGD~V~~~ 50 (64)
T cd04451 4 EGVVTEALPNAMFRVELEN--G---------------HEVLAHISGKMR-MNYIRILPGDRVKVE 50 (64)
T ss_pred EEEEEEEeCCCEEEEEeCC--C---------------CEEEEEECceee-cCCcccCCCCEEEEE
Confidence 5888888877888886432 1 123333556655 333 7899999887
No 378
>PRK06247 pyruvate kinase; Provisional
Probab=21.73 E-value=2.2e+02 Score=30.88 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCCeEEEeCC--CCeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 015764 132 QAENIVIDLP--DWQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (401)
Q Consensus 132 ~~~~vvv~~~--DW~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (401)
..|++-+.|- .=.|..+-+++.. +..|++...+.+--+-.=++++. +|||++.+.|.+
T Consensus 186 ~vD~ia~SFVr~a~Di~~~r~~l~~----~~~iiaKIEt~eav~nldeI~~~-~DgImVaRGDLg 245 (476)
T PRK06247 186 GVDWVALSFVQRPEDVEEVRKIIGG----RVPVMAKIEKPQAIDRLEAIVEA-SDAIMVARGDLG 245 (476)
T ss_pred CCCEEEECCCCCHHHHHHHHHHhhh----cCeEEEEECCHHHHHhHHHHHHH-cCEEEEccchhc
Confidence 4666666542 2234455555532 56799999999999999999999 999999999853
No 379
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=21.70 E-value=7.1e+02 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=14.1
Q ss_pred EEEEEEE-------EcCCcceEEEeec
Q 015764 218 ATVTRVD-------VAGMGDRVCVDLC 237 (401)
Q Consensus 218 atVt~V~-------~vGmGDRVCVDtc 237 (401)
++|++|+ .+.-||||.|-+-
T Consensus 305 ~~VksI~~~~~~v~~a~aG~~vai~l~ 331 (460)
T PTZ00327 305 TRIVSLFAENNELQYAVPGGLIGVGTT 331 (460)
T ss_pred EEEEEEEECCeECCEEcCCCEEEEEec
Confidence 5666665 3568999999753
No 380
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=21.16 E-value=72 Score=33.32 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=40.3
Q ss_pred CCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEe
Q 015764 268 IASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKT 334 (401)
Q Consensus 268 va~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~ 334 (401)
+|+-|||.- -.-||-..+|.=-|++||.|+|...-|+. -.|=..|||+.|=.-+
T Consensus 232 IAtPPp~~~-------~~PpG~mSSyi~sLKpGDKvtisGPfGEf------FaKdtdaemvFigGGA 285 (410)
T COG2871 232 IATPPPRNP-------DAPPGQMSSYIWSLKPGDKVTISGPFGEF------FAKDTDAEMVFIGGGA 285 (410)
T ss_pred eccCCCCCC-------CCCccceeeeEEeecCCCeEEEeccchhh------hhccCCCceEEEecCc
Confidence 344577763 12366677777789999999999999987 5677889999886543
No 381
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=21.03 E-value=1.5e+02 Score=24.33 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=17.5
Q ss_pred eccCCCeEEEEcCCCCeeEEeeeeEEE
Q 015764 296 ELKSGKEVIVVDQKGRQRTAVVGRVKI 322 (401)
Q Consensus 296 EL~sG~eVLvVd~~G~tR~~~VGRvKI 322 (401)
-|+.||.|.+.+..|+.+ .+||+
T Consensus 44 gi~~Gd~V~v~s~~G~~~----~~v~~ 66 (116)
T cd02786 44 GIADGDLVVVFNDRGSVT----LRAKV 66 (116)
T ss_pred CCCCCCEEEEEcCCeEEE----EEEEE
Confidence 478899999999998553 45554
No 382
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=20.95 E-value=61 Score=32.46 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=27.1
Q ss_pred hhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEec-----CCHHHH
Q 015764 148 AENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKV-----EDVKAV 196 (401)
Q Consensus 148 lENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~-----~d~~ev 196 (401)
++.|+.++ +-..-|=|...+++||. .++|.|+|||++.| .||-.+
T Consensus 167 l~~i~~~~-~vPvIvDAGiG~pSdaa---~AMElG~daVLvNTAiA~A~dPv~M 216 (247)
T PF05690_consen 167 LRIIIERA-DVPVIVDAGIGTPSDAA---QAMELGADAVLVNTAIAKAKDPVAM 216 (247)
T ss_dssp HHHHHHHG-SSSBEEES---SHHHHH---HHHHTT-SEEEESHHHHTSSSHHHH
T ss_pred HHHHHHhc-CCcEEEeCCCCCHHHHH---HHHHcCCceeehhhHHhccCCHHHH
Confidence 45566665 33344456677888865 57899999999976 466443
No 383
>PTZ00300 pyruvate kinase; Provisional
Probab=20.90 E-value=1.5e+02 Score=31.96 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=46.3
Q ss_pred CCCCeEEEeCCC--CeeeehhhhhhcccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHH
Q 015764 131 GQAENIVIDLPD--WQVIPAENIVASFQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVK 194 (401)
Q Consensus 131 ~~~~~vvv~~~D--W~iIPlENliA~~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ 194 (401)
..++++.+.|=. =.+.-+-+++... +.+..|++...+.+--+-.=+++ .|+|||++.+.|.+
T Consensus 159 ~gvd~I~~SfVrsaeDv~~vr~~l~~~-~~~~~IiaKIEt~eav~nldeI~-~~~DgImVaRGDLg 222 (454)
T PTZ00300 159 QGVDMIFASFIRSAEQVGEVRKALGAK-GGDIMIICKIENHQGVQNIDSII-EESDGIMVARGDLG 222 (454)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhc-CCCceEEEEECCHHHHHhHHHHH-HhCCEEEEecchhh
Confidence 358899887642 1244455555432 34678999999999999999999 89999999999864
No 384
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=20.89 E-value=75 Score=29.07 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=32.6
Q ss_pred EeEecceEEEecCCCCCCCCCceeeeeecCCCCEEEEEecCCCc
Q 015764 345 ILQNAETVALVSPCKGTGEQEKAIPVTSLKVGDEVLLRVQGAAR 388 (401)
Q Consensus 345 iLQnAETIRLv~p~~g~~~~g~~vsVt~LK~GD~VL~~~~~~gR 388 (401)
+-..=|+||++.|+ .=.+|+..|-.-|++.+.+++.||
T Consensus 82 ~~~~iESIrI~~pG------~YElNL~~L~~r~e~Ii~l~eeG~ 119 (131)
T PF09845_consen 82 LNDRIESIRILEPG------SYELNLEELLERDEIIIALQEEGR 119 (131)
T ss_pred cccCcceEEEecCc------eEEecHHHHhcCCceEEEecCCce
Confidence 44556999999998 467999999999999999887776
No 385
>PRK10537 voltage-gated potassium channel; Provisional
Probab=20.81 E-value=6.5e+02 Score=26.36 Aligned_cols=72 Identities=13% Similarity=-0.056 Sum_probs=45.3
Q ss_pred EEEEecChhhhhhhccccCCCCeEEEeCCCCeeeehhhhhhc----ccCCCceEEEEcCCHHHHHHHHHHhhcccCeEEE
Q 015764 113 SIIEVSTPQELQQLQPADGQAENIVIDLPDWQVIPAENIVAS----FQGSGKTVFAISKTPSEAQIFLEALEQGLGGIVL 188 (401)
Q Consensus 113 ~~~~v~~~e~~e~~~~~~~~~~~vvv~~~DW~iIPlENliA~----~q~~~~~l~a~v~~~~eA~~al~~LE~G~DGVvl 188 (401)
.+.+.++++.++++- ..+++.+++...| ..+|+.+. -.+.+.++++.+++.+.++.+ .+.|+|-|+.
T Consensus 285 I~GD~td~e~L~~Ag--I~~A~aVI~~t~d----D~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L---~~~GaD~VIs 355 (393)
T PRK10537 285 IPGDSSDSAVLKKAG--AARARAILALRDN----DADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKI---KRVHPDMIFS 355 (393)
T ss_pred EEeCCCCHHHHHhcC--cccCCEEEEcCCC----hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHH---HhcCCCEEEC
Confidence 444555666555544 3357788875554 34555432 223457899999999987766 4579999775
Q ss_pred ecCCH
Q 015764 189 KVEDV 193 (401)
Q Consensus 189 ~~~d~ 193 (401)
+.+..
T Consensus 356 p~~l~ 360 (393)
T PRK10537 356 PQLLG 360 (393)
T ss_pred HHHHH
Confidence 55433
No 386
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=20.73 E-value=91 Score=30.25 Aligned_cols=35 Identities=37% Similarity=0.663 Sum_probs=23.7
Q ss_pred eeEEEecCC--ceeeee--eccCCCeEEEEc---CCCCeeEE
Q 015764 281 HAYVLVPGG--KTCYLS--ELKSGKEVIVVD---QKGRQRTA 315 (401)
Q Consensus 281 HaYv~~pgg--kT~YLS--EL~sG~eVLvVd---~~G~tR~~ 315 (401)
+.|+....| .|.||+ .+..|++||+|| ..|.|-.+
T Consensus 153 ~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~ 194 (238)
T PRK08558 153 EEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGETQRA 194 (238)
T ss_pred EEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHHHHH
Confidence 346544334 367776 688999999999 66766443
No 387
>PLN02929 NADH kinase
Probab=20.63 E-value=1.3e+02 Score=30.64 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=47.9
Q ss_pred EEecCCceeeeeeccCCCeEE---EEcCCCCeeEEeeeeEEEecccee--EEEEEecCCCCeEEEEEeEecceEEEecCC
Q 015764 284 VLVPGGKTCYLSELKSGKEVI---VVDQKGRQRTAVVGRVKIESRPLI--LVEAKTNSGDQTLYGIILQNAETVALVSPC 358 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVL---vVd~~G~tR~~~VGRvKIE~RPLl--LVeAe~~~~~G~~~sviLQnAETIRLv~p~ 358 (401)
|..|-|-|.|- |.+|..|+ -=+-+.-.++-+--.. -.|||+ +|.. +..+.+-+ +.+...+.- |
T Consensus 201 VsTpTGSTAY~--lSAGG~i~Piv~P~l~~~vltPI~Ph~--~~r~l~~~vv~~------~~~i~i~~-~~~~~~i~i-D 268 (301)
T PLN02929 201 VSTAAGSTAAM--LSAGGFPMPLLSRDLQYMVREPISPGH--PPKSLMHGFYKP------GQHMQVRW-NSRKGTIYI-D 268 (301)
T ss_pred EeCCccHHHHH--HhcCCCCCCCCCcccceEEEEeeCCCC--CCCCccccEECC------CCeEEEEE-eCCCEEEEE-C
Confidence 66788888882 34777443 2233333444333333 578884 3332 34556655 335566665 4
Q ss_pred CCCCCCCceeeeeecCCCCEEEEEecCC
Q 015764 359 KGTGEQEKAIPVTSLKVGDEVLLRVQGA 386 (401)
Q Consensus 359 ~g~~~~g~~vsVt~LK~GD~VL~~~~~~ 386 (401)
|. .....|++||+|.++....
T Consensus 269 ------G~-~~~~~l~~gd~i~I~~s~~ 289 (301)
T PLN02929 269 ------GS-HVMHSIKLGDTIEISSDAP 289 (301)
T ss_pred ------CC-cceEecCCCCEEEEEECCC
Confidence 21 1345699999999986543
No 388
>PRK10403 transcriptional regulator NarP; Provisional
Probab=20.56 E-value=3.6e+02 Score=22.86 Aligned_cols=39 Identities=15% Similarity=0.309 Sum_probs=26.8
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
.++..... .+......+++.|+++++.+|.++.++.+..
T Consensus 82 ~ii~l~~~-~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i 120 (215)
T PRK10403 82 QIIILTVS-DASSDVFALIDAGADGYLLKDSDPEVLLEAI 120 (215)
T ss_pred eEEEEeCC-CChHHHHHHHHcCCCeEEecCCCHHHHHHHH
Confidence 44444322 4445566779999999999999887765443
No 389
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=20.54 E-value=1.5e+02 Score=24.92 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=37.6
Q ss_pred CCeeeecCCce-----eEEEecCCceeeeeeccCCCeEEEEcCC-CCeeEEeeeeEEEecccee
Q 015764 271 RPFRVNAGPVH-----AYVLVPGGKTCYLSELKSGKEVIVVDQK-GRQRTAVVGRVKIESRPLI 328 (401)
Q Consensus 271 RPFRVNAGaVH-----aYv~~pggkT~YLSEL~sG~eVLvVd~~-G~tR~~~VGRvKIE~RPLl 328 (401)
.-..|+.|++. |-++. -|=+..-.+++.||.|.|++.+ |+ ..-||++..-..-|.
T Consensus 31 ~~v~vd~~a~~~l~~Ga~L~~-pGV~~~~~~~~~gd~V~I~~~~~~~--~iavG~a~~~s~e~~ 91 (107)
T TIGR00451 31 KIVVVDNGAVKFLKNGADVMR-PGIVDADEDIKEGDDVVVVDENKDR--PLAVGIALMSGEEMK 91 (107)
T ss_pred CEEEEChhHHHHHHCCccccC-CeeEeCCCCcCCCCEEEEEECCCCe--EEEEEEEecCHHHHH
Confidence 34677777665 33333 3334555689999999999886 64 578999987766553
No 390
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=20.48 E-value=3.5e+02 Score=23.03 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=29.0
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHHH
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLALK 200 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l~ 200 (401)
..++..... .+......+++.|++|.+.+|.+..++.+.-
T Consensus 78 ~~ii~ls~~-~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 117 (210)
T PRK09935 78 VKVLFLSSK-SECFYAGRAIQAGANGFVSKCNDQNDIFHAV 117 (210)
T ss_pred CcEEEEECC-CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 445544443 5556667899999999999999988776543
No 391
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=20.48 E-value=68 Score=34.82 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=25.1
Q ss_pred CceeeeeecCCCCEEEEEecCCCcccceeee
Q 015764 365 EKAIPVTSLKVGDEVLLRVQGAARHTGIEIQ 395 (401)
Q Consensus 365 g~~vsVt~LK~GD~VL~~~~~~gRHfG~~I~ 395 (401)
|..|+..+++|||-|...-..+..|+||-|.
T Consensus 419 G~~Vs~selqpGDLVFF~~~~~~~HVGIYiG 449 (481)
T PRK13914 419 TTRISESQAKPGDLVFFDYGSGISHVGIYVG 449 (481)
T ss_pred CcccccccCCCCCEEEeCCCCCCCEEEEEeC
Confidence 5778999999999998765455679999873
No 392
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.47 E-value=1.4e+02 Score=24.71 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=31.0
Q ss_pred EEEeeccccCCCCCCCCeeeecCCceeEEEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEE
Q 015764 256 FLVHSECLESNYIASRPFRVNAGPVHAYVLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKI 322 (401)
Q Consensus 256 FLVhsEt~es~Yva~RPFRVNAGaVHaYv~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKI 322 (401)
+..|+.+..++++..+. -+.|+.+.- .+.-=--|+.||.|.+.+..|+.+ .+|++
T Consensus 11 ~~~~s~~~~~~~l~~~~-------~~~~v~i~p-~dA~~~gi~~Gd~V~v~s~~G~i~----~~v~v 65 (123)
T cd02778 11 VHTHGHTANNPLLHELT-------PENTLWINP-ETAARLGIKDGDRVEVSSARGKVT----GKARL 65 (123)
T ss_pred eecCCccccCHHHHhcC-------CCCeEEECH-HHHHHcCCCCCCEEEEEeCCCcEE----EEEEE
Confidence 34566665555443332 234555521 122222478899999999999643 45554
No 393
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.47 E-value=2.9e+02 Score=27.71 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=43.1
Q ss_pred EEecCCceeeeeeccCCCeEEEEcCCCCeeEEeeeeEEEeccceeEEEEEecCCCCeEEEE-EeEec-ceEEEecCCCCC
Q 015764 284 VLVPGGKTCYLSELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLILVEAKTNSGDQTLYGI-ILQNA-ETVALVSPCKGT 361 (401)
Q Consensus 284 v~~pggkT~YLSEL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLlLVeAe~~~~~G~~~sv-iLQnA-ETIRLv~p~~g~ 361 (401)
|..|-|-|.| -|.+|..|+--+.+. --.++|---..-.||+++= +..++.+ +.++. ..+.|+- |
T Consensus 184 VsTPtGSTAY--slSAGGPIv~P~~~~-~~vtPi~ph~l~~rplVlp-------~~~~i~i~~~~~~~~~~~l~~-D--- 249 (305)
T PRK02645 184 VSTPTGSTAY--TMAAGGPILHPGIDA-IIVTPICPMSLSSRPIVIP-------PGSRVVIWPLGDYDLNIKLWK-D--- 249 (305)
T ss_pred EecCCChhhh--hhhcCCcccCCCCCe-EEEEecCcccccCCCEEEC-------CCCEEEEEEcCCCCCcEEEEE-C---
Confidence 3456666666 355555554333322 1122233333445787762 2233444 23433 2355544 3
Q ss_pred CCCCceeeeeecCCCCEEEEEecCC
Q 015764 362 GEQEKAIPVTSLKVGDEVLLRVQGA 386 (401)
Q Consensus 362 ~~~g~~vsVt~LK~GD~VL~~~~~~ 386 (401)
|. ....|++||+|.++....
T Consensus 250 ---G~--~~~~l~~~~~i~i~~s~~ 269 (305)
T PRK02645 250 ---GV--LATSIWPGQRCVIQKARH 269 (305)
T ss_pred ---CC--cceecCCCCEEEEEECCC
Confidence 22 367889999998887654
No 394
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=20.33 E-value=69 Score=31.03 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=31.9
Q ss_pred cCCceeEEEecCCce---eeeeeccCCCeEEEEcCCCCeeEEeeeeE
Q 015764 277 AGPVHAYVLVPGGKT---CYLSELKSGKEVIVVDQKGRQRTAVVGRV 320 (401)
Q Consensus 277 AGaVHaYv~~pggkT---~YLSEL~sG~eVLvVd~~G~tR~~~VGRv 320 (401)
+|+...--..|++.. .+|.+.++|| ||++|..|..+.+..|-.
T Consensus 50 ~G~A~TV~~~~~d~~~~~~ai~~~~pGd-VlVid~~g~~~~a~~G~~ 95 (222)
T TIGR02798 50 CGTAVTVLLQPGDNWMMHVAAEQIQEGD-VVVAACTAECEDGYFGDL 95 (222)
T ss_pred EEEEEEEEeecCCchHHHHHHHhCCCCe-EEEEECCCCcceEeehHH
Confidence 666655555565543 5788888876 788999999999998854
No 395
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=20.31 E-value=1.5e+02 Score=25.87 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=26.9
Q ss_pred eEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 161 TVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 161 ~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
.++.... ..+......+++.|+|+++.+|-++.++...
T Consensus 75 ~ii~l~~-~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~ 112 (221)
T PRK10766 75 GIILVTG-RTDSIDRIVGLEMGADDYVTKPLELRELLVR 112 (221)
T ss_pred CEEEEEC-CCcHHHHHHHHHcCCCcEEeCCCCHHHHHHH
Confidence 4444433 3344556788999999999999998876543
No 396
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=20.20 E-value=1.7e+02 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=28.4
Q ss_pred ceEEEEcCCHHHHHHHHHHhhcccCeEEEecCCHHHHHHH
Q 015764 160 KTVFAISKTPSEAQIFLEALEQGLGGIVLKVEDVKAVLAL 199 (401)
Q Consensus 160 ~~l~a~v~~~~eA~~al~~LE~G~DGVvl~~~d~~ev~~l 199 (401)
..++.... ..+......+++.|++|.+.+|-++.++.+.
T Consensus 77 ~~ii~ls~-~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~ 115 (226)
T TIGR02154 77 IPIIMLTA-RGEEEDRVRGLETGADDYITKPFSPRELLAR 115 (226)
T ss_pred CCEEEEec-CCCHHHHHHHHhcCcceEEeCCCCHHHHHHH
Confidence 44555443 3445667789999999999999998876543
No 397
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.12 E-value=1.3e+02 Score=29.50 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=42.0
Q ss_pred CCeeeecCCceeEEEecCCceeeee---eccCCCeEEEEcCCCCeeEEeeeeEEEecccee
Q 015764 271 RPFRVNAGPVHAYVLVPGGKTCYLS---ELKSGKEVIVVDQKGRQRTAVVGRVKIESRPLI 328 (401)
Q Consensus 271 RPFRVNAGaVHaYv~~pggkT~YLS---EL~sG~eVLvVd~~G~tR~~~VGRvKIE~RPLl 328 (401)
|-|--+.-..+.|+..+++..+||- -|+.||++.+.|.+|....+.+ .++.++...
T Consensus 5 ~~~v~~~~~~~~~~~l~~~~~~Hl~~VlRl~~gd~l~l~~g~g~~~~a~i--~~~~kk~~~ 63 (246)
T COG1385 5 RLFVDEELAEGATVILTGDEAHHLKRVLRLKEGDELRLFDGSGGEFLAEI--TKIGKKEAL 63 (246)
T ss_pred eEeecccccCCCEEEECchhhhhHHheeecCCCCEEEEEeCCCcEEEEEE--eecCCCceE
Confidence 4444455667789999999999998 7899999999999999887633 234455433
No 398
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.08 E-value=1.4e+02 Score=26.81 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=27.9
Q ss_pred HHHHHHHhhcccCeEEEecC-CHHHHHHHHHhhcc
Q 015764 172 AQIFLEALEQGLGGIVLKVE-DVKAVLALKEYFDG 205 (401)
Q Consensus 172 A~~al~~LE~G~DGVvl~~~-d~~ev~~l~~~~~~ 205 (401)
-+.+.-.||||+==|.-+++ +++++.+|+++++.
T Consensus 40 ~e~~VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~ 74 (130)
T PF11303_consen 40 PERAVHNLEHGAVWITYDPCLPPDQVAKLKALAKS 74 (130)
T ss_pred hHHHHHhhhcCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 34566779999988888999 88999999998854
No 399
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=20.03 E-value=3.7e+02 Score=28.31 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=24.3
Q ss_pred EcCCcceEEEeecCCCCCCceEEEeccCceEEEEeeccccCCCCCCCCeee
Q 015764 225 VAGMGDRVCVDLCSLMRPGEGLLVGSFARGLFLVHSECLESNYIASRPFRV 275 (401)
Q Consensus 225 ~vGmGDRVCVDtcsll~~GEGmLVGS~s~glFLVhsEt~es~Yva~RPFRV 275 (401)
.+.-||||.+-+.++ =.-+-.+|++|++.+. +|..+.+=|+.
T Consensus 289 ~a~aG~~v~i~L~~i-------~~~~v~rG~vl~~~~~--~p~~~~~~f~a 330 (446)
T PTZ00141 289 EAVPGDNVGFNVKNV-------SVKDIKRGYVASDSKN--DPAKECADFTA 330 (446)
T ss_pred EECCCCEEEEEECCC-------CHHHcCCceEEecCCC--CCCccceEEEE
Confidence 456899999966532 1124567777776542 34444444544
No 400
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=20.02 E-value=1.6e+02 Score=28.44 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=25.4
Q ss_pred CCcEEEEEe---CchhHhHHHHHhCCcEEEEcC
Q 015764 49 KPKRVWIWT---ESKQVMTAAVERGWNTFVFLS 78 (401)
Q Consensus 49 ~~K~vWiw~---~~K~~vt~AlEsG~~~~v~~~ 78 (401)
+.+.|++|| .+.+.+...++-|+|+++.+.
T Consensus 244 ~Gl~v~~WTv~~n~~~~~~~l~~~GVdgIiTD~ 276 (286)
T cd08606 244 SGLVCVSYGVLNNDPENAKTQVKAGVDAVIVDS 276 (286)
T ss_pred CCcEEEEECCccCCHHHHHHHHHcCCCEEEECC
Confidence 567799997 358899999999999999865
Done!