BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015765
(401 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
K +GI+P +Y + FC GD+ Y + A M + P + LL
Sbjct: 132 KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191
Query: 234 EDVGKVLQMM 243
+ V K LQ +
Sbjct: 192 DKVYKTLQRL 201
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 28/70 (40%)
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
K +GI+P +Y + FC GD+ Y + A + P + LL
Sbjct: 132 KAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNA 191
Query: 234 EDVGKVLQMM 243
+ V K LQ +
Sbjct: 192 DKVYKTLQRL 201
>pdb|3BTU|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|C Chain C, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|D Chain D, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|E Chain E, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|F Chain F, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
Length = 438
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 40 EKKRATIARLK-SESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLL 98
E ATI RLK S + F L+ S A S +D + +I V A+H+ + LL
Sbjct: 61 ETSIATIQRLKLSNATAFPTLE-----SFASSSTIDMIVIAIQV-----ASHYEVVMPLL 110
Query: 99 EELKTRPDLR 108
E K P+L+
Sbjct: 111 EFSKNNPNLK 120
>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|B Chain B, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 438
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 40 EKKRATIARLK-SESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLL 98
E ATI RLK S + F L+ S A S +D + +I V A+H+ + LL
Sbjct: 61 ETSIATIQRLKLSNATAFPTLE-----SFASSSTIDMIVIAIQV-----ASHYEVVMPLL 110
Query: 99 EELKTRPDLR 108
E K P+L+
Sbjct: 111 EFSKNNPNLK 120
>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTS|B Chain B, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTV|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
pdb|3BTV|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
Length = 438
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 40 EKKRATIARLK-SESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLL 98
E ATI RLK S + F L+ S A S +D + +I V A+H+ + LL
Sbjct: 61 ETSIATIQRLKLSNATAFPTLE-----SFASSSTIDMIVIAIQV-----ASHYEVVMPLL 110
Query: 99 EELKTRPDLR 108
E K P+L+
Sbjct: 111 EFSKNNPNLK 120
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 212 SIRPNATDFGLLL--AGFYKEHKYEDVGKVLQMMEKCGIASGV 252
+ RP AT G+ L EH E V ++L M E G A+GV
Sbjct: 355 TARPPATPAGMFLLRCSLCAEHSDEQVEQILGMFESAGRATGV 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,007,013
Number of Sequences: 62578
Number of extensions: 421889
Number of successful extensions: 1082
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 11
length of query: 401
length of database: 14,973,337
effective HSP length: 101
effective length of query: 300
effective length of database: 8,652,959
effective search space: 2595887700
effective search space used: 2595887700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)