BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015765
(401 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LE47|PPR87_ARATH Pentatricopeptide repeat-containing protein At1g61870,
mitochondrial OS=Arabidopsis thaliana GN=PPR336 PE=2
SV=2
Length = 408
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/409 (54%), Positives = 306/409 (74%), Gaps = 10/409 (2%)
Query: 1 MALLYRLRTNFNL-----KTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNP 55
MALL R+R++ +L + R+L+++S + + D LT KEK +A ++ LKSE +P
Sbjct: 1 MALLSRIRSSTSLFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDP 60
Query: 56 FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFH 114
RIL+IC ASL P+ +DR+AFS AV L++ HF+A+S LL+ ++ RPDL+ +ERF
Sbjct: 61 DRILEICRAASLTPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLK-SERFA 119
Query: 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174
H+IVLY QANM+DH+++ F +++K+ + ++V +LNALL C+++K+Y+E KR++ E PK
Sbjct: 120 AHAIVLYAQANMLDHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPK 179
Query: 175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE 234
+YGIEP+ ETYN++IK FCESG +SS YSI+AEM RK I+PN++ FGL+++GFY E K +
Sbjct: 180 MYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSD 239
Query: 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294
+VGKVL MM+ G+ GV+ YNIRIQSLCK K+S+EAKALLDGMLS G+KPN TY HLI
Sbjct: 240 EVGKVLAMMKDRGVNIGVSTYNIRIQSLCKRKKSKEAKALLDGMLSAGMKPNTVTYSHLI 299
Query: 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
HGF E + E AKKLF M N GC+PDS C+F Y+LC+GG++ETAL +C+ SM K WV
Sbjct: 300 HGFCNEDDFEEAKKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWV 359
Query: 355 PHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALPR 400
P FS MKSLV GLA SKV EA ELIG +K++F ++ ++WN AALP+
Sbjct: 360 PSFSIMKSLVNGLAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408
>sp|Q9SAB4|PPR33_ARATH Pentatricopeptide repeat-containing protein At1g11630,
mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=1
SV=1
Length = 405
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/405 (50%), Positives = 290/405 (71%), Gaps = 9/405 (2%)
Query: 1 MALLYRLRTN-FNLKTVNYRNLATSSLLSAGDEAAALTIKEKK-RATIARLKSESNPFRI 58
MA L+R+RT+ F L+ L +SS S+ +LT K+KK R T++ LKSE+NP RI
Sbjct: 1 MAFLFRIRTSEFILQKATQFRLKSSS--SSIFTLKSLTSKQKKSRDTLSLLKSENNPDRI 58
Query: 59 LDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEE-LKTRPDLRQNERFHVHS 117
L+IC SL+P+ +DR+ FS+AV L++ HF A+SQLL+ ++ +PD ++E F V +
Sbjct: 59 LEICRSTSLSPDYHVDRIIFSVAVVTLAREKHFVAVSQLLDGFIQNQPD-PKSESFAVRA 117
Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
I+LYG+ANM+D ++QTF +++Y + ++V +LNALL C+++K+Y+E R++ E PK+YG
Sbjct: 118 IILYGRANMLDRSIQTFRNLEQYEIPRTVKSLNALLFACLMAKDYKEANRVYLEMPKMYG 177
Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
IEP+ ETYN++I+ CESG +SS YSI+AEM RK I+P A FGL++ GFYKE K+++V
Sbjct: 178 IEPDLETYNRMIRVLCESGSTSSSYSIVAEMERKWIKPTAASFGLMIDGFYKEEKFDEVR 237
Query: 238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
KV++MM++ G+ GV YNI IQ LCK K+S EAKAL+DG++S ++PN TY LIHGF
Sbjct: 238 KVMRMMDEFGVHVGVATYNIMIQCLCKRKKSAEAKALIDGVMSCRMRPNSVTYSLLIHGF 297
Query: 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
E NL+ A LF M G +PDS C+F + LC+GG++ETAL +CR SM K WVP F
Sbjct: 298 CSEENLDEAMNLFEVMVCNGYKPDSECYFTLIHCLCKGGDFETALILCRESMEKNWVPSF 357
Query: 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN---AALP 399
S MK LV GLAS SKV EA ELI ++K++F ++ D+WN AALP
Sbjct: 358 SVMKWLVNGLASRSKVDEAKELIAVVKEKFTRNVDLWNEVEAALP 402
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 196 bits (499), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 185/344 (53%), Gaps = 4/344 (1%)
Query: 49 LKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRPDL 107
L+ E +P + L I S SP+ R A + V +L++ F+ I L+E K P +
Sbjct: 40 LRKEHDPDKALKIYANVSDHSASPVSSRYAQELTVRRLAKCRRFSDIETLIESHKNDPKI 99
Query: 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKR 167
++ E F+ I YGQA+M +HAM+TFE+MD+YG +S + NALL C+ SKN+++V +
Sbjct: 100 KE-EPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACLHSKNFDKVPQ 158
Query: 168 IFTEFPKVYG-IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226
+F E P+ Y I P+ +Y +IKS+C+SG I+ +M+ K + F +L+
Sbjct: 159 LFDEIPQRYNKIIPDKISYGILIKSYCDSGTPEKAIEIMRQMQGKGMEVTTIAFTTILSS 218
Query: 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
YK+ + E + M K G YN+RI S K + E K L++ M S G+KP+
Sbjct: 219 LYKKGELEVADNLWNEMVKKGCELDNAAYNVRIMSAQK-ESPERVKELIEEMSSMGLKPD 277
Query: 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
+Y +L+ + + G L+ AKK++ + C P++ F + LC YE + +
Sbjct: 278 TISYNYLMTAYCERGMLDEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFK 337
Query: 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390
S+ +P F+T+K LV GL K +A LI +KK+FP S
Sbjct: 338 KSVYMHKIPDFNTLKHLVVGLVENKKRDDAKGLIRTVKKKFPPS 381
>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520,
mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2
SV=1
Length = 418
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 8/344 (2%)
Query: 47 ARLKSESNPFRILDICCGASLAPESPLD-RMAFSIAVSKLSQANHFNAISQLLEELKTRP 105
++L+ +P + L I S SPL R A + V +L+++ F+ I L+E K P
Sbjct: 38 SKLRKVQDPDKALAIYKSVSNNSTSPLSSRYAMELTVQRLAKSQRFSDIEALIESHKNNP 97
Query: 106 DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165
++ E F I YG+A+M DHAM+ FEEMDK G ++V + NALL C+ S +E V
Sbjct: 98 KIK-TETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACLHSDLFERV 156
Query: 166 KRIFTEFPKVY-GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLL 224
++F EFP+ Y I P+ +Y +IKS+C+SG I+ +M K + F +L
Sbjct: 157 PQLFDEFPQRYNNITPDKISYGMLIKSYCDSGKPEKAMEIMRDMEVKGVEVTIIAFTTIL 216
Query: 225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284
YK ++ + M G VYN+R+ + K + E K L++ M S G+K
Sbjct: 217 GSLYKNGLVDEAESLWIEMVNKGCDLDNTVYNVRLMNAAK-ESPERVKELMEEMSSVGLK 275
Query: 285 PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKV 344
P+ +Y +L+ + +G + AKK++ G +P++ F + LC G Y+ L V
Sbjct: 276 PDTVSYNYLMTAYCVKGMMSEAKKVY----EGLEQPNAATFRTLIFHLCINGLYDQGLTV 331
Query: 345 CRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388
+ S +P F T K L GL +++ +A + ++KK+FP
Sbjct: 332 FKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARGVARIVKKKFP 375
>sp|Q8GW57|PP134_ARATH Pentatricopeptide repeat-containing protein At1g80150,
mitochondrial OS=Arabidopsis thaliana GN=At1g80150 PE=2
SV=2
Length = 397
Score = 172 bits (435), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 100/351 (28%), Positives = 177/351 (50%), Gaps = 1/351 (0%)
Query: 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQL 97
+K + + +LKSE +P ++ ++ + +R AF VS+L+ A + I L
Sbjct: 34 LKPLEEPALVKLKSERDPEKLYNLFKANATNRLVIENRFAFEDTVSRLAGAGRLDFIEDL 93
Query: 98 LEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI 157
LE KT P R+ E F V I+LYG+A M A+ TF MD YG ++SV + NA L
Sbjct: 94 LEHQKTLPQGRR-EGFIVRIIMLYGKAGMTKQALDTFFNMDLYGCKRSVKSFNAALQVLS 152
Query: 158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA 217
+ + + + P YGI+ ++ ++N IKSFCE G Y + EM + + P+
Sbjct: 153 FNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEKSGLTPDV 212
Query: 218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG 277
+ L++ YK + + +M G + +N+RIQ L +R+ +A LL
Sbjct: 213 VTYTTLISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDANDLLLL 272
Query: 278 MLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE 337
M ++P+ TY +I GF + A++++ +M G +P+ + ++LC+ G
Sbjct: 273 MPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGYKPNLKIYQTMIHYLCKAGN 332
Query: 338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388
++ A +C+ M K W P+ T++ L+ GL ++ +A ++ L+ +R P
Sbjct: 333 FDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIMELVHRRVP 383
>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160,
mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1
SV=1
Length = 394
Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 185/380 (48%), Gaps = 7/380 (1%)
Query: 5 YRLRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCG 64
+ LR NF+ T R ++ AAA T K + I + E +P I +
Sbjct: 7 FLLRGNFSFSTHTNRRFFSAVT------AAAATPSPPKPSLITLVNDERDPKFITEKFKK 60
Query: 65 ASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA 124
A A + + V +L+ A F + ++LEE P++ + E F I LYG+
Sbjct: 61 ACQAEWFRKNIAVYERTVRRLAAAKKFEWVEEILEEQNKYPNMSK-EGFVARIINLYGRV 119
Query: 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET 184
M ++A + F+EM + +++ + NALL C+ SK ++ V+ IF E P IEP+ +
Sbjct: 120 GMFENAQKVFDEMPERNCKRTALSFNALLNACVNSKKFDLVEGIFKELPGKLSIEPDVAS 179
Query: 185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244
YN +IK C G + +++ E+ K ++P+ F +LL Y + K+E+ ++ M
Sbjct: 180 YNTLIKGLCGKGSFTEAVALIDEIENKGLKPDHITFNILLHESYTKGKFEEGEQIWARMV 239
Query: 245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304
+ + + YN R+ L +SEE +L D + +KP++ T+ +I GF EG L+
Sbjct: 240 EKNVKRDIRSYNARLLGLAMENKSEEMVSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLD 299
Query: 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364
A + + GC P + F +C+ G+ E+A ++C+ AK + + ++ +V
Sbjct: 300 EAITWYKEIEKNGCRPLKFVFNSLLPAICKAGDLESAYELCKEIFAKRLLVDEAVLQEVV 359
Query: 365 TGLASISKVAEANELIGLMK 384
L SK EA E++ L K
Sbjct: 360 DALVKGSKQDEAEEIVELAK 379
>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150
OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1
Length = 551
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 157/303 (51%), Gaps = 1/303 (0%)
Query: 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEM 137
+S + +L +A F+ I ++L+ K D++ +E F + ++LYG + M +HA + F+EM
Sbjct: 90 YSAFIRRLREAKKFSTIDEVLQYQKKFDDIK-SEDFVIRIMLLYGYSGMAEHAHKLFDEM 148
Query: 138 DKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197
+ ++V + NALL + SK +E + F E P+ GI P+ TYN +IK+ C G
Sbjct: 149 PELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGS 208
Query: 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNI 257
+ SI E+ + P+ F LL FY+ + + ++ +M+ ++ + YN
Sbjct: 209 MDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNS 268
Query: 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317
R++ L + K+ +A L+D M + GI P++ TY LI + + NLE K + M G
Sbjct: 269 RVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKG 328
Query: 318 CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377
PD+ + M LC+ G+ + A++V ++ + + K +V L K+ EA
Sbjct: 329 LTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEAT 388
Query: 378 ELI 380
+L+
Sbjct: 389 QLV 391
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 80/193 (41%), Gaps = 1/193 (0%)
Query: 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL-QMMEKCGIASGVN 253
SG + + + EM + F LL+ + K ++ K ++ EK GI +
Sbjct: 135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLV 194
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
YN I++LC+ ++ ++ + + G +P+L ++ L+ F + +++ M
Sbjct: 195 TYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLM 254
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
+ P+ + L + ++ AL + +G P T +L+T + +
Sbjct: 255 KSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTEGISPDVHTYNALITAYRVDNNL 314
Query: 374 AEANELIGLMKKR 386
E + MK++
Sbjct: 315 EEVMKCYNEMKEK 327
>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890,
mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1
SV=1
Length = 398
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 190/378 (50%), Gaps = 3/378 (0%)
Query: 7 LRTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGAS 66
LR FN T R ++++ + + A I +++ + + E NP RI++ A
Sbjct: 8 LRGTFN--TCPIRRFSSAATVVSEPTAVTAAISPPQKSLTSLVNGERNPKRIVEKFKKAC 65
Query: 67 LAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126
+ + + V +L A + + ++LEE K D+ + E F I LYG+A M
Sbjct: 66 ESERFRTNIAVYDRTVRRLVAAKRLHYVEEILEEQKKYRDMSK-EGFAARIISLYGKAGM 124
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
++A + FEEM ++SV + NALL LSK ++ V+ +F E P I+P+ +YN
Sbjct: 125 FENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEELFNELPGKLSIKPDIVSYN 184
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+IK+ CE ++L E+ K ++P+ F LL Y + ++E ++ M +
Sbjct: 185 TLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMVEK 244
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
+A + YN R+ L +S+E L + + G+KP++ ++ +I G EG ++ A
Sbjct: 245 NVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEA 304
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+ + + G PD F + +C+ G++E+A+++ + + +K ++ +T++ LV
Sbjct: 305 EAWYKEIVKHGYRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDE 364
Query: 367 LASISKVAEANELIGLMK 384
L SK EA E++ + K
Sbjct: 365 LVKGSKREEAEEIVKIAK 382
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 167/354 (47%), Gaps = 6/354 (1%)
Query: 49 LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLR 108
+ S+S+P +I AS P R + I + KL + +FN I +L + ++
Sbjct: 58 IASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSSGYPL 117
Query: 109 QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRI 168
E F + I +Y +A + + + TF +M ++ LN +L + + Y +++
Sbjct: 118 TGEIF-TYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGY--LQKA 174
Query: 169 FTEF--PKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226
F F +++G+ PN+ +YN ++++FC + D S Y + +M + + P+ + +L+ G
Sbjct: 175 FELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQG 234
Query: 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
F ++ + ++L M G Y + SLC+ + EA LL M +G P+
Sbjct: 235 FCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPD 294
Query: 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
L Y +I GF +E A+K+ M + GC P+S + LC G ++ K
Sbjct: 295 LVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLE 354
Query: 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIG-LMKKRFPKSGDMWNAALP 399
++KG+ PHFS LV G S KV EA +++ +MK D W +P
Sbjct: 355 EMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIP 408
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G P+ +Y ++ S C Y +L M+ K P+ + ++ GF +E + D
Sbjct: 255 GFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDA 314
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
KVL M G + Y I LC +E K L+ M+S+G P+ L+ G
Sbjct: 315 RKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKG 374
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339
F G +E A + + G S + M +C E E
Sbjct: 375 FCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDESE 417
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G PNS +Y +I C+ G L EM K P+ + L+ GF K E+
Sbjct: 325 GCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 384
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI 283
V++++ K G + + + I +C SE+ K L+ + I
Sbjct: 385 CDVVEVVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEEI 431
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 146/326 (44%), Gaps = 10/326 (3%)
Query: 56 FRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV 115
I+D+ P D ++ +S L + ++L+++ TR D N +
Sbjct: 315 IEIMDVMLQEGYDP----DVYTYNSVISGLCKLGEVKEAVEVLDQMITR-DCSPNTVTYN 369
Query: 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV 175
I + N ++ A + + G+ V N+L+ G L++N+ +F E +
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM-RS 428
Query: 176 YGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED 235
G EP+ TYN +I S C G ++L +M + + L+ GF K +K +
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTRE 488
Query: 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295
++ ME G++ YN I LCK +R E+A L+D M+ G KP+ TY L+
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLT 548
Query: 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG--W 353
F + G+++ A + +MT+ GCEPD + LC+ G E A K+ R+ KG
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINL 608
Query: 354 VPHFSTMKSLVTGLASISKVAEANEL 379
PH ++ GL K EA L
Sbjct: 609 TPH--AYNPVIQGLFRKRKTTEAINL 632
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 1/311 (0%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D F++ + L +A+ +LE++ + L +E+ + Y + +D A++
Sbjct: 188 DVSTFNVLIKALCRAHQLRPAILMLEDMPSY-GLVPDEKTFTTVMQGYIEEGDLDGALRI 246
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
E+M ++G S ++N ++ G E+ E G P+ T+N ++ C
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
++G I+ M ++ P+ + +++G K + ++ +VL M +
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTV 366
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
YN I +LCK + EEA L + S+GI P++ T+ LI G N A +LF M
Sbjct: 367 TYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEM 426
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
+ GCEPD + + M LC G+ + AL + + G T +L+ G +K
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486
Query: 374 AEANELIGLMK 384
EA E+ M+
Sbjct: 487 REAEEIFDEME 497
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 139/315 (44%), Gaps = 18/315 (5%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYGQANM--ID 128
D+ F+ V+ L +A H ++++ + PD+ + ++ V+ G + +
Sbjct: 294 DQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDV------YTYNSVISGLCKLGEVK 347
Query: 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEPNSETY 185
A++ ++M + N L+ EE TE +V GI P+ T+
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA----TELARVLTSKGILPDVCTF 403
Query: 186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK 245
N +I+ C + + + EMR K P+ + +L+ + K ++ +L+ ME
Sbjct: 404 NSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463
Query: 246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG 305
G A V YN I CK ++ EA+ + D M G+ N TY LI G K +E
Sbjct: 464 SGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED 523
Query: 306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT 365
A +L M G +PD Y + C+GG+ + A + +A + G P T +L++
Sbjct: 524 AAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLIS 583
Query: 366 GLASISKVAEANELI 380
GL +V A++L+
Sbjct: 584 GLCKAGRVEVASKLL 598
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 126/301 (41%), Gaps = 6/301 (1%)
Query: 87 QANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV 146
Q + + +++E +PD F+ + L N + + +M +G++ V
Sbjct: 134 QDEILSVVDWMIDEFGLKPD----THFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDV 189
Query: 147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILA 206
N L+ + + + P YG+ P+ +T+ V++ + E GD I
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPS-YGLVPDEKTFTTVMQGYIEEGDLDGALRIRE 248
Query: 207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ-MMEKCGIASGVNVYNIRIQSLCKL 265
+M + +++ GF KE + ED +Q M + G +N + LCK
Sbjct: 249 QMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308
Query: 266 KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF 325
+ A ++D ML G P++ TY +I G K G ++ A ++ M C P++ +
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 326 FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385
LC+ + E A ++ R +KG +P T SL+ GL A EL M+
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 386 R 386
+
Sbjct: 429 K 429
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 137/321 (42%), Gaps = 12/321 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYGQANMIDHA 130
D F+ + L + +L EE++++ PD + S+ G+ +D A
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD-EFTYNMLIDSLCSKGK---LDEA 454
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
+ ++M+ G +SV N L+ G + E + IF E +V+G+ NS TYN +I
Sbjct: 455 LNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEM-EVHGVSRNSVTYNTLID 513
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
C+S ++ +M + +P+ + LL F + + ++Q M G
Sbjct: 514 GLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEP 573
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
+ Y I LCK R E A LL + +GI Y +I G ++ A LF
Sbjct: 574 DIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLF 633
Query: 311 ASM-TNGGCEPDSYCFFMFTYFLCQ-GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368
M PD+ + + LC GG A+ + KG+VP FS++ L GL
Sbjct: 634 REMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693
Query: 369 SISKVAEANELIGLM--KKRF 387
++S +L+ ++ K RF
Sbjct: 694 TLSMEETLVKLVNMVMQKARF 714
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 2/187 (1%)
Query: 182 SETYNKVIKSFCESGDSSSVYSILAEMRRK-SIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
S T K++ S D S+ + +K + P + +L + ++D+ K+L
Sbjct: 47 SSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKIL 106
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR-GIKPNLDTYKHLIHGFGK 299
+ M+ G + + I I+S + + +E +++D M+ G+KP+ Y +++
Sbjct: 107 EDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVD 166
Query: 300 EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359
+L+ + A M+ G +PD F + LC+ + A+ + + G VP T
Sbjct: 167 GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKT 226
Query: 360 MKSLVTG 366
+++ G
Sbjct: 227 FTTVMQG 233
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 1/303 (0%)
Query: 84 KLSQANHFNAISQLLEELK-TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL 142
KLS+A F+ + L+ +L+ + P ++ E + + YG A + +M+ F + +G+
Sbjct: 92 KLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGV 151
Query: 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY 202
++SV +LN LL I ++ ++ V +F + +GI PN T N ++K+ C+ D S Y
Sbjct: 152 KRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAY 211
Query: 203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL 262
+L E+ + PN + +L G+ E +VL+ M G Y + +
Sbjct: 212 KVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGY 271
Query: 263 CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS 322
CKL R EA ++D M I+PN TY +I KE A+ +F M PDS
Sbjct: 272 CKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDS 331
Query: 323 YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGL 382
LC+ + + A + R + +P + + +L+ L +V EA +L
Sbjct: 332 SLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDE 391
Query: 383 MKK 385
+K
Sbjct: 392 FEK 394
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 134/306 (43%), Gaps = 7/306 (2%)
Query: 79 SIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL--YGQANMIDHAMQTFEE 136
++ V L + N + ++L+E+ P + ++ +L Y ++ A + EE
Sbjct: 195 NLLVKALCKKNDIESAYKVLDEI---PSMGLVPNLVTYTTILGGYVARGDMESAKRVLEE 251
Query: 137 MDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196
M G L+ G + E + + K IEPN TY +I++ C+
Sbjct: 252 MLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEK-NEIEPNEVTYGVMIRALCKEK 310
Query: 197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYN 256
S ++ EM +S P+++ ++ ++HK ++ + + M K + +
Sbjct: 311 KSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLS 370
Query: 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316
I LCK R EA+ L D +G P+L TY LI G ++G L A +L+ M
Sbjct: 371 TLIHWLCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYER 429
Query: 317 GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEA 376
C+P+++ + + L + G + ++V + G P+ +T L GL + K +A
Sbjct: 430 KCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDA 489
Query: 377 NELIGL 382
+++ +
Sbjct: 490 MKIVSM 495
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 2/234 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y + A ++M+K + + ++ K E + +F E + P
Sbjct: 271 YCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLE-RSFMP 329
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+S KVI + CE + +M + + P+ L+ KE + + K+
Sbjct: 330 DSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLF 389
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
EK I S + YN I +C+ EA L D M R KPN TY LI G K
Sbjct: 390 DEFEKGSIPSLL-TYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKN 448
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
GN++ ++ M GC P+ F + L + G+ E A+K+ ++ G V
Sbjct: 449 GNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKV 502
>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580,
mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2
SV=1
Length = 405
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 143/280 (51%), Gaps = 4/280 (1%)
Query: 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ-ANMIDHAMQTFEE 136
+++ ++K QA ++ I +++ +K R +E F + + +YG A I+ A++
Sbjct: 98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157
Query: 137 MDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196
M +G S + N +L + +K ++E+ +IF PK+ G+E ++ N +IK CESG
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKL-GVEIDACCLNILIKGLCESG 216
Query: 197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYN 256
+ + +L E ++ RPN F L+ GF + K+E+ K+L+ MEK I +N
Sbjct: 217 NLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFN 276
Query: 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-FGKEGNLEGAKKLFASMTN 315
I I L K R EE LL+ M +G +PN TY+ +++G K+ NLE AK++ + M +
Sbjct: 277 ILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLE-AKEMMSQMIS 335
Query: 316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355
G P + LC+ V R + G+VP
Sbjct: 336 WGMRPSFLSYKKMVLGLCETKSVVEMDWVLRQMVNHGFVP 375
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%)
Query: 215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL 274
P++ F +L ++++ K+ K G+ NI I+ LC+ E A L
Sbjct: 165 PSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQL 224
Query: 275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ 334
LD + +PN+ T+ LI GF +G E A KL M EPD+ F + L +
Sbjct: 225 LDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRK 284
Query: 335 GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383
G E + + KG P+ T + ++ GL + EA E++ M
Sbjct: 285 KGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQM 333
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 3/203 (1%)
Query: 186 NKVIKSFCESGDSSSVYSILAEM-RRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM-- 242
N+V+K F D S + +RK +P + + L++ F + Y+++ +V++
Sbjct: 63 NEVLKIFDNVKDPSFLLPAYQHYSKRKDYQPTESLYALMINKFGQAKMYDEIEEVMRTIK 122
Query: 243 MEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN 302
+EK S YN+ R A +L GM G P+ ++ +++
Sbjct: 123 LEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFGMPDFGCWPSSKSFNFILNLLVSAKL 182
Query: 303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS 362
+ K+F S G E D+ C + LC+ G E AL++ + P+ T
Sbjct: 183 FDEIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSP 242
Query: 363 LVTGLASISKVAEANELIGLMKK 385
L+ G + K EA +L+ M+K
Sbjct: 243 LIRGFCNKGKFEEAFKLLERMEK 265
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 91/348 (26%), Positives = 162/348 (46%), Gaps = 37/348 (10%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D ++S + KL+++ +F+A+ Q+L ++ R ++R E + I YG+A +D A+
Sbjct: 80 DYPSYSSLIYKLAKSRNFDAVDQILRLVRYR-NVRCRESLFMGLIQHYGKAGSVDKAIDV 138
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF- 192
F ++ + +++ +LN L+ + + E+ K F + K + PNS ++N +IK F
Sbjct: 139 FHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFF-DGAKDMRLRPNSVSFNILIKGFL 197
Query: 193 ----------------------------------CESGDSSSVYSILAEMRRKSIRPNAT 218
C + D S+L +M +K IRPNA
Sbjct: 198 DKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAV 257
Query: 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM 278
FGLL+ G + +Y + K++ ME G G+ Y I + L K R +EAK LL M
Sbjct: 258 TFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEM 317
Query: 279 LSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY 338
R IKP++ Y L++ E + A ++ M GC+P++ + M C+ ++
Sbjct: 318 KKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDF 377
Query: 339 ETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
++ L V A +A P +T +V GL + A ++ +M K+
Sbjct: 378 DSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKK 425
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 121/294 (41%), Gaps = 36/294 (12%)
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRI---------------FTEF 172
+ A+ F + + G R + ++L+ S+N++ V +I F
Sbjct: 63 EEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGL 122
Query: 173 PKVYG----IEPNSETYNKV---------------IKSFCESGDSSSVYSILAEMRRKSI 213
+ YG ++ + ++K+ I ++G+ S + +
Sbjct: 123 IQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRL 182
Query: 214 RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA 273
RPN+ F +L+ GF + +E KV M + + V YN I LC+ +AK+
Sbjct: 183 RPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKS 242
Query: 274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC 333
LL+ M+ + I+PN T+ L+ G +G AKKL M GC+P + + L
Sbjct: 243 LLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLG 302
Query: 334 QGGEYETALKVCRASMAKGWV-PHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
+ G + A K+ M K + P LV L + +V EA ++ M+ +
Sbjct: 303 KRGRIDEA-KLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMK 355
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 96/229 (41%), Gaps = 1/229 (0%)
Query: 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222
EE +F ++ ++ G + +Y+ +I +S + +V IL +R +++R + F
Sbjct: 63 EEALSLFHQYQEM-GFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMG 121
Query: 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG 282
L+ + K + V + + N I L E+AK+ DG
Sbjct: 122 LIQHYGKAGSVDKAIDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMR 181
Query: 283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL 342
++PN ++ LI GF + + E A K+F M +P + FLC+ + A
Sbjct: 182 LRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAK 241
Query: 343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391
+ + K P+ T L+ GL + EA +L+ M+ R K G
Sbjct: 242 SLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPG 290
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 1/142 (0%)
Query: 122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN 181
G+ ID A EM K ++ V N L+ E R+ TE ++ G +PN
Sbjct: 302 GKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEM-QMKGCKPN 360
Query: 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ 241
+ TY +I FC D S ++L M P F ++AG K + VL+
Sbjct: 361 AATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLE 420
Query: 242 MMEKCGIASGVNVYNIRIQSLC 263
+M K ++ G + + LC
Sbjct: 421 VMGKKNLSFGSGAWQNLLSDLC 442
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 121 bits (304), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 136/286 (47%), Gaps = 2/286 (0%)
Query: 116 HSIVLYG--QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173
++I+++G Q+ D A++ F+EM K ++ + L+ G +E ++ +
Sbjct: 155 YNILIHGCSQSGCFDDALKLFDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDML 214
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
KVYG+ P Y +IK+ C+ G+ S + + E I+ +A + L++ K +
Sbjct: 215 KVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRS 274
Query: 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL 293
+V +L+ M + G YN+ I C SE A +LD M+ +G+KP++ +Y +
Sbjct: 275 NEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMI 334
Query: 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW 353
+ F + E A LF M GC PD+ + + LC+G ++E A + + KG+
Sbjct: 335 LGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGY 394
Query: 354 VPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAALP 399
P ++ + L K+ +++I + + D+W+ +P
Sbjct: 395 KPRRDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMIP 440
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 13/197 (6%)
Query: 73 LDRMAFSIAVSKLSQANHFNAISQLLEELK---TRPDLRQNERFHVHSIVLYG--QANMI 127
+D +S +S L +A N +S +LEE+ +PD +++++ G N
Sbjct: 256 VDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTV------TYNVLINGFCVENDS 309
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
+ A + +EM + GL+ V + N +L K +EE +F + P+ G P++ +Y
Sbjct: 310 ESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPR-RGCSPDTLSYRI 368
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG 247
V CE IL EM K +P L + K E + KV+ + + G
Sbjct: 369 VFDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHR-G 427
Query: 248 IASGVNVYNIRIQSLCK 264
IA +V+++ I ++CK
Sbjct: 428 IAGDADVWSVMIPTMCK 444
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 144/305 (47%), Gaps = 9/305 (2%)
Query: 81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY 140
+ KL F A+ ++L +++ E +V ++ YG+ + A+ FE MD Y
Sbjct: 46 VIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFY 105
Query: 141 GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSS 200
+V + NA++ + S +++ +++ + GI P+ ++ +KSFC++ +
Sbjct: 106 DCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRM-RDRGITPDVYSFTIRMKSFCKTSRPHA 164
Query: 201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEH----KYEDVGKVLQMMEKCGIASGVNVYN 256
+L M + N + ++ GFY+E+ YE GK+L G++ ++ +N
Sbjct: 165 ALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLA----SGVSLCLSTFN 220
Query: 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316
++ LCK +E + LLD ++ RG+ PNL TY I G + G L+GA ++ +
Sbjct: 221 KLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQ 280
Query: 317 GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEA 376
G +PD + Y LC+ +++ A + +G P T +L+ G V A
Sbjct: 281 GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLA 340
Query: 377 NELIG 381
++G
Sbjct: 341 ERIVG 345
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 101/210 (48%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G P+ TY +I C G+++ ++ E K I+PN + L+ G + +
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M + G+ V +NI + LCK+ +A L+ M+S+G P++ T+ LIHG
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
+ + +E A ++ M + G +PD Y + LC+ ++E ++ + + KG P+
Sbjct: 471 YSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPN 530
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
T L+ L K+ EA L+ MK +
Sbjct: 531 LFTFNILLESLCRYRKLDEALGLLEEMKNK 560
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 135/315 (42%), Gaps = 49/315 (15%)
Query: 115 VHSIVLYGQAN--MIDHAMQTFEEMDKYGLRQSVDALNALL-----LGCILSKNYEEVKR 167
+++ ++ G +N MI A Q EM + GL V N L+ +GC+ S VK
Sbjct: 393 LYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV-SDADGLVKV 451
Query: 168 IFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF 227
+ ++ G P+ T+N +I + + IL M + P+ + LL G
Sbjct: 452 MISK-----GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGL 506
Query: 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN- 286
K K+EDV + + M + G A + +NI ++SLC+ ++ +EA LL+ M ++ + P+
Sbjct: 507 CKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDA 566
Query: 287 ---------------LD--------------------TYKHLIHGFGKEGNLEGAKKLFA 311
LD TY +IH F ++ N+ A+KLF
Sbjct: 567 VTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQ 626
Query: 312 SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS 371
M + PD Y + + C+ G K M G++P +T+ ++ L
Sbjct: 627 EMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVED 686
Query: 372 KVAEANELIGLMKKR 386
+V EA +I M ++
Sbjct: 687 RVYEAAGIIHRMVQK 701
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 103/210 (49%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G+ T+NK+++ C+ GD +L ++ ++ + PN + L + G + + +
Sbjct: 211 GVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
+++ + + G V YN I LCK + +EA+ L M++ G++P+ TY LI G
Sbjct: 271 VRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAG 330
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
+ K G ++ A+++ G PD + + LC GE AL + ++ KG P+
Sbjct: 331 YCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPN 390
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
+L+ GL++ + EA +L M ++
Sbjct: 391 VILYNTLIKGLSNQGMILEAAQLANEMSEK 420
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 145/342 (42%), Gaps = 15/342 (4%)
Query: 23 TSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASLAPESPL--DRMAFSI 80
T+ L+ +EA IK +K SN IL+ A+ E L + F+I
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNI 431
Query: 81 AVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYGQANMI--DHAMQTFE 135
V+ L + + L++ + ++ PD+ +I+++G + + ++A++ +
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDI------FTFNILIHGYSTQLKMENALEILD 485
Query: 136 EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195
M G+ V N+LL G + +E+V + + G PN T+N +++S C
Sbjct: 486 VMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVE-KGCAPNLFTFNILLESLCRY 544
Query: 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNV 254
+L EM+ KS+ P+A FG L+ GF K + + + ME+ ++S
Sbjct: 545 RKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPT 604
Query: 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT 314
YNI I + + A+ L M+ R + P+ TY+ ++ GF K GN+ K M
Sbjct: 605 YNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMM 664
Query: 315 NGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
G P LC A + + KG VP
Sbjct: 665 ENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 130/317 (41%), Gaps = 4/317 (1%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D +F+I + + + +A +LL + ++ N + + + + N +
Sbjct: 145 DVYSFTIRMKSFCKTSRPHAALRLLNNMSSQ-GCEMNVVAYCTVVGGFYEENFKAEGYEL 203
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
F +M G+ + N LL + +E +++ + K G+ PN TYN I+ C
Sbjct: 204 FGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIK-RGVLPNLFTYNLFIQGLC 262
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+ G+ ++ + + +P+ + L+ G K K+++ L M G+
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
YN I CK + A+ ++ + G P+ TY+ LI G EG A LF
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEA 382
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
G +P+ + L G A ++ KG +P T LV GL + V
Sbjct: 383 LGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCV 442
Query: 374 AEANELIGLM--KKRFP 388
++A+ L+ +M K FP
Sbjct: 443 SDADGLVKVMISKGYFP 459
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 90/214 (42%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
GI+PN YN +IK G + EM K + P F +L+ G K D
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++++M G + +NI I + E A +LD ML G+ P++ TY L++G
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
K E + + +M GC P+ + F + LC+ + + AL + K P
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390
T +L+ G + A L M++ + S
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVS 599
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 119/306 (38%), Gaps = 38/306 (12%)
Query: 114 HVHSIVLYGQANMIDHAMQTFEEMDK-YGLRQSVDALNALLLGCILSKNYEEVKRIFTEF 172
HV +++ + M A++ F M K G + ++ +++ +E ++ + +
Sbjct: 9 HVTAVIKCQKDPM--KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDM 66
Query: 173 PKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK 232
+ G Y +K++ G ++ M P + +++
Sbjct: 67 RENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGY 126
Query: 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKH 292
++ KV M GI V + IR++S CK R A LL+ M S+G + N+ Y
Sbjct: 127 FDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCT 186
Query: 293 LIHGF-----------------------------------GKEGNLEGAKKLFASMTNGG 317
++ GF K+G+++ +KL + G
Sbjct: 187 VVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246
Query: 318 CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377
P+ + + +F LCQ GE + A+++ + +G P T +L+ GL SK EA
Sbjct: 247 VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAE 306
Query: 378 ELIGLM 383
+G M
Sbjct: 307 VYLGKM 312
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 115 bits (288), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 157/340 (46%), Gaps = 4/340 (1%)
Query: 49 LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLR 108
LKSE NP + A+ P + + + +LS+ N +S+++E ++++ + +
Sbjct: 17 LKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQ-ECK 75
Query: 109 QNERFHVHSIVLYGQANMIDHAMQTFEEM-DKYGLRQSVDALNALLLGCILSKNYEEVKR 167
+E + I YG+ +M D A+ F+ M + +G ++ + N LL + +K + +V+
Sbjct: 76 CDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVES 135
Query: 168 IFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF 227
+F F + G+ PN +TYN +IK C+ + L M ++ +P+ + ++
Sbjct: 136 LFAYF-ETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDL 194
Query: 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML-SRGIKPN 286
K K +D ++ M + G+A V YNI I K K + A L D +L + PN
Sbjct: 195 AKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPN 254
Query: 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
+ T+ +I G K G ++ K++ M E D Y + + LC G + A V
Sbjct: 255 VKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFN 314
Query: 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
+ T +++ G K+ E+ EL +M+ +
Sbjct: 315 ELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHK 354
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 113/261 (43%), Gaps = 14/261 (5%)
Query: 120 LYGQANMID---------HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFT 170
+Y A++ID A +EM K+G+ + NAL+ G I E
Sbjct: 429 VYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLR 488
Query: 171 EFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE 230
E K G P +YN +I C++G + + EM +P+ + +LL G ++
Sbjct: 489 EMGK-NGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRD 547
Query: 231 HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY 290
K + ++ + G+ + V ++NI I LC + + ++A ++ M R NL TY
Sbjct: 548 RKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTY 607
Query: 291 KHLIHGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTYFLCQGGEYETALKVCRAS 348
L+ GF K G+ A ++ M G +PD SY M +C+G Y A++ +
Sbjct: 608 NTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSY--AMEFFDDA 665
Query: 349 MAKGWVPHFSTMKSLVTGLAS 369
G P T LV + +
Sbjct: 666 RNHGIFPTVYTWNILVRAVVN 686
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 130/351 (37%), Gaps = 54/351 (15%)
Query: 79 SIAVSKLSQANHFNAISQLLEELKTRPDLRQNER---FHVHSIVLYG--QANMIDHAMQT 133
+I +S LS+ + ++ E +K QNER + +S +++G A +D A
Sbjct: 259 NIMISGLSKCGRVDDCLKIWERMK------QNEREKDLYTYSSLIHGLCDAGNVDKAESV 312
Query: 134 FEEMDKYGLRQSVDALNALLLG---CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
F E+D+ V N +L G C K E+ RI V N +YN +IK
Sbjct: 313 FNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNSV-----NIVSYNILIK 367
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
E+G I M K + T +G+ + G V+Q +E G
Sbjct: 368 GLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHL 427
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
V Y I LCK KR EEA L+ M G++ N LI G ++ L A
Sbjct: 428 DVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFL 487
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM---------- 360
M GC P + + LC+ G++ A + + GW P T
Sbjct: 488 REMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRD 547
Query: 361 -------------------------KSLVTGLASISKVAEANELIGLMKKR 386
L+ GL S+ K+ +A ++ M+ R
Sbjct: 548 RKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHR 598
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 85/201 (42%)
Query: 185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244
Y +I C+ +++ EM + + N+ L+ G ++ + + L+ M
Sbjct: 432 YASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMG 491
Query: 245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304
K G V YNI I LCK + EA A + ML G KP+L TY L+ G ++ ++
Sbjct: 492 KNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKID 551
Query: 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364
A +L+ G E D + + LC G+ + A+ V + + T +L+
Sbjct: 552 LALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLM 611
Query: 365 TGLASISKVAEANELIGLMKK 385
G + A + G M K
Sbjct: 612 EGFFKVGDSNRATVIWGYMYK 632
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 1/265 (0%)
Query: 122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN 181
+A +D A++ F+EM + G+ V N L+ G + K+++ ++ + + PN
Sbjct: 195 AKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPN 254
Query: 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ 241
+T+N +I + G I M++ + + L+ G + V
Sbjct: 255 VKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFN 314
Query: 242 MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301
+++ + V YN + C+ + +E+ L M + N+ +Y LI G + G
Sbjct: 315 ELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENG 373
Query: 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK 361
++ A ++ M G D + +F + LC G AL V + + G
Sbjct: 374 KIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYA 433
Query: 362 SLVTGLASISKVAEANELIGLMKKR 386
S++ L ++ EA+ L+ M K
Sbjct: 434 SIIDCLCKKKRLEEASNLVKEMSKH 458
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 114 bits (286), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 129/272 (47%), Gaps = 4/272 (1%)
Query: 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174
++ + L G+ + A++ + M + G + + +N L+ G LS E + + +
Sbjct: 165 INGLCLEGR---VSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVE 221
Query: 175 VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE 234
YG +PN+ TY V+ C+SG ++ +L +M ++I+ +A + +++ G K +
Sbjct: 222 -YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLD 280
Query: 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294
+ + ME GI + + YNI I C R ++ LL M+ R I PN+ T+ LI
Sbjct: 281 NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 340
Query: 295 HGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV 354
F KEG L A++L M + G PD+ + C+ + A ++ ++KG
Sbjct: 341 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCD 400
Query: 355 PHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
P+ T L+ G +++ + EL M R
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFRKMSLR 432
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 1/250 (0%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
AM+ +M++ ++ + ++ G + + +F E ++ GI N TYN +I
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM-EMKGITTNIITYNILI 305
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
FC +G +L +M ++ I PN F +L+ F KE K + ++ + M GIA
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIA 365
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
Y I CK ++A ++D M+S+G PN+ T+ LI+G+ K ++ +L
Sbjct: 366 PDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLEL 425
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
F M+ G D+ + C+ G+ A ++ + +++ P+ T K L+ GL
Sbjct: 426 FRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCD 485
Query: 370 ISKVAEANEL 379
+ +A E+
Sbjct: 486 NGESEKALEI 495
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 6/309 (1%)
Query: 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG--QANMIDHA 130
LD + +SI + L + + L E++ + ++I++ G A D
Sbjct: 261 LDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG---ITTNIITYNILIGGFCNAGRWDDG 317
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
+ +M K + +V + L+ + E + + E GI P++ TY +I
Sbjct: 318 AKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH-RGIAPDTITYTSLID 376
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
FC+ ++ M K PN F +L+ G+ K ++ +D ++ + M G+ +
Sbjct: 377 GFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVA 436
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
YN IQ C+L + AK L M+SR + PN+ TYK L+ G G E A ++F
Sbjct: 437 DTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIF 496
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
+ E D + + + +C + + A + + KG P T ++ GL
Sbjct: 497 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKK 556
Query: 371 SKVAEANEL 379
++EA L
Sbjct: 557 GPLSEAELL 565
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 115/249 (46%), Gaps = 1/249 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
+ + N +D A Q + M G ++ N L+ G + ++ +F + + G+
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM-SLRGVVA 436
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
++ TYN +I+ FCE G + + EM + + PN + +LL G + E ++
Sbjct: 437 DTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIF 496
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ +EK + + +YNI I +C + ++A L + +G+KP + TY +I G K+
Sbjct: 497 EKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKK 556
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G L A+ LF M G PD + + + G+ ++K+ G+ ST+
Sbjct: 557 GPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTI 616
Query: 361 KSLVTGLAS 369
K ++ L+
Sbjct: 617 KMVIDMLSD 625
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 114/266 (42%), Gaps = 10/266 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYGQANMIDHA 130
D + ++ + + NH + +Q+++ + ++ P++R F++ I Y +AN ID
Sbjct: 367 DTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT---FNIL-INGYCKANRIDDG 422
Query: 131 MQTFEEMDKYGLRQSVDALNALLLG-CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
++ F +M G+ N L+ G C L K K +F E + PN TY ++
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGK-LNVAKELFQEMVS-RKVPPNIVTYKILL 480
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
C++G+S I ++ + + + + +++ G K +D + + G+
Sbjct: 481 DGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 540
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
GV YNI I LCK EA+ L M G P+ TY LI +G+ + KL
Sbjct: 541 PGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 600
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQG 335
+ G D+ M L G
Sbjct: 601 IEELKRCGFSVDASTIKMVIDMLSDG 626
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 81/203 (39%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G EPN+ T++ +I C G S ++ M +P+ L+ G K +
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M + G Y + +CK ++ A LL M R IK + Y +I G
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
K G+L+ A LF M G + + + C G ++ K+ R + + P+
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332
Query: 357 FSTMKSLVTGLASISKVAEANEL 379
T L+ K+ EA EL
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEEL 355
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 105/259 (40%), Gaps = 1/259 (0%)
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
D A+ F +M +V + L +K Y+ V + + ++ GI N T +
Sbjct: 70 DDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQM-ELKGIAHNLYTLSI 128
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG 247
+I FC +S + ++ + PN F L+ G E + + +++ M + G
Sbjct: 129 MINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMG 188
Query: 248 IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307
+ N + LC + EA L+D M+ G +PN TY +++ K G A
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 248
Query: 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
+L M + D+ + + LC+ G + A + KG + T L+ G
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 308
Query: 368 ASISKVAEANELIGLMKKR 386
+ + + +L+ M KR
Sbjct: 309 CNAGRWDDGAKLLRDMIKR 327
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 120/259 (46%), Gaps = 1/259 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
ID A +M+ + V N ++ ++ ++ +F E + GI PN TY+
Sbjct: 166 IDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYS 224
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I C G S +L++M K I PN F L+ F KE K+ + K+ M K
Sbjct: 225 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR 284
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
I + YN I C R ++AK + + M+S+ P+LDTY LI GF K +E
Sbjct: 285 SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDG 344
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+LF M++ G D+ + L G+ + A KV + ++ G P T L+ G
Sbjct: 345 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404
Query: 367 LASISKVAEANELIGLMKK 385
L + K+ +A E+ M+K
Sbjct: 405 LCNNGKLEKALEVFDYMQK 423
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 106/266 (39%), Gaps = 1/266 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y I A+ ++M + G R L+ G L E + + G +P
Sbjct: 90 YCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQP 148
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
N TY V+ C+ GD +++L +M I + F ++ K +D +
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 208
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ ME GI V Y+ I LC R +A LL M+ + I PNL T+ LI F KE
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G A+KL M +PD + + C + A ++ ++K P T
Sbjct: 269 GKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTY 328
Query: 361 KSLVTGLASISKVAEANELIGLMKKR 386
+L+ G +V + EL M R
Sbjct: 329 NTLIKGFCKSKRVEDGTELFREMSHR 354
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/323 (23%), Positives = 140/323 (43%), Gaps = 10/323 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT---RPDLRQNERFHVHSIVLYGQANMIDHA 130
D + F+ + L + H + L +E++T RP++ + + YG+ + A
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL-ISCLCSYGRWS---DA 239
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
Q +M + + ++ NAL+ + + E +++ + K I+P+ TYN +I
Sbjct: 240 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIK-RSIDPDIFTYNSLIN 298
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
FC + M K P+ + L+ GF K + ED ++ + M G+
Sbjct: 299 GFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 358
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
Y IQ L + A+ + M+S G+ P++ TY L+ G G LE A ++F
Sbjct: 359 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 418
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
M + D Y + +C+ G+ + + + KG P+ T ++++GL S
Sbjct: 419 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478
Query: 371 SKVAEANELIGLMKKR--FPKSG 391
+ EA L+ MK+ P SG
Sbjct: 479 RLLQEAYALLKKMKEDGPLPDSG 501
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
GI N TYN +I FC S ++L +M + P+ LL G+ + D
Sbjct: 40 GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDA 99
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M + G + I L ++ EA AL+D M+ RG +PNL TY +++G
Sbjct: 100 VALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
K G+++ A L M E D F LC+ + AL + + KG P+
Sbjct: 160 LCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPN 219
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
T SL++ L S + ++A++L+ M ++
Sbjct: 220 VVTYSSLISCLCSYGRWSDASQLLSDMIEK 249
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 134/312 (42%), Gaps = 8/312 (2%)
Query: 76 MAFSIAVSKLSQANHFNAISQLLEEL---KTRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132
+ +S +S L ++ SQLL ++ K P+L F+ + ++ A +
Sbjct: 221 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT---FNALIDAFVKEGKFVE-AEK 276
Query: 133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192
++M K + + N+L+ G + ++ K++F EF P+ +TYN +IK F
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMF-EFMVSKDCFPDLDTYNTLIKGF 335
Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
C+S + EM + + + + L+ G + + ++ KV + M G+ +
Sbjct: 336 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 395
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
Y+I + LC + E+A + D M IK ++ Y +I G K G ++ LF S
Sbjct: 396 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 455
Query: 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372
++ G +P+ + LC + A + + G +P T +L+
Sbjct: 456 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
Query: 373 VAEANELIGLMK 384
A + ELI M+
Sbjct: 516 KAASAELIREMR 527
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 106/259 (40%), Gaps = 1/259 (0%)
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
D + E+M + G+ ++ N +L+ C ++ + G EP+ T +
Sbjct: 27 DLVISLGEKMQRLGISHNLYTYN-ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 85
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG 247
++ +C S +++ +M RP+ F L+ G + +K + ++ M + G
Sbjct: 86 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 145
Query: 248 IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307
+ Y + + LCK + A LL+ M + I+ ++ + +I K +++ A
Sbjct: 146 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDAL 205
Query: 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
LF M G P+ + LC G + A ++ + K P+ T +L+
Sbjct: 206 NLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAF 265
Query: 368 ASISKVAEANELIGLMKKR 386
K EA +L M KR
Sbjct: 266 VKEGKFVEAEKLHDDMIKR 284
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 84/207 (40%)
Query: 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV 239
P+ +NK++ + + V S+ +M+R I N + +L+ F + + +
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 240 LQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299
L M K G + + + C KR +A AL+D M+ G +P+ T+ LIHG
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 300 EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359
A L M GC+P+ + + LC+ G+ + A + A
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 360 MKSLVTGLASISKVAEANELIGLMKKR 386
+++ L V +A L M+ +
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETK 214
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 116 HSIVLYGQAN--MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173
+SI+L G N ++ A++ F+ M K ++ + ++ G + ++ +F
Sbjct: 398 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL- 456
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
+ G++PN TYN +I C Y++L +M+ P++ + L+ ++
Sbjct: 457 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDK 516
Query: 234 EDVGKVLQMMEKC 246
++++ M C
Sbjct: 517 AASAELIREMRSC 529
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAM 131
P D M +SI + L ++ + ++ + +++ + + I +A +D
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQ-KSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 132 QTFEEMDKYGLRQSVDALNALLLGC----ILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
F + G++ +V N ++ G +L + Y +K++ + P P+S TYN
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL-----PDSGTYNT 505
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLL 223
+I++ GD ++ ++ EMR +A+ GL+
Sbjct: 506 LIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 541
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/309 (25%), Positives = 140/309 (45%), Gaps = 8/309 (2%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLE---ELKTRPDLRQNERFHVHSIVLYGQANMIDHA 130
DR+ V+ + N + L++ E+ +PD+ + S+ + ++ A
Sbjct: 154 DRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAI-IDSLC---KTKRVNDA 209
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
F+E+++ G+R +V AL+ G S + + R+ ++ K I PN TY+ ++
Sbjct: 210 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK-KKITPNVITYSALLD 268
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
+F ++G + EM R SI P+ + L+ G + ++ ++ +M G +
Sbjct: 269 AFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLA 328
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
V YN I CK KR E+ L M RG+ N TY LI GF + G+++ A++ F
Sbjct: 329 DVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFF 388
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
+ M G PD + + + LC GE E AL + + T +++ G+
Sbjct: 389 SQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 448
Query: 371 SKVAEANEL 379
KV EA L
Sbjct: 449 GKVEEAWSL 457
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 135/317 (42%), Gaps = 10/317 (3%)
Query: 81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL--YGQANMIDHAMQTFEEMD 138
A+ KL + + ++ + +E L R DL + +IV+ + + A+ +M
Sbjct: 94 AIVKLKKYDVVISLGKKMEVLGIRNDL------YTFNIVINCFCCCFQVSLALSILGKML 147
Query: 139 KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS 198
K G + +L+ G + + + ++ G +P+ YN +I S C++
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRV 206
Query: 199 SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR 258
+ + E+ RK IRPN + L+ G ++ D ++L M K I V Y+
Sbjct: 207 NDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSAL 266
Query: 259 IQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC 318
+ + K + EAK L + M+ I P++ TY LI+G ++ A ++F M + GC
Sbjct: 267 LDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGC 326
Query: 319 EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE 378
D + C+ E +K+ R +G V + T +L+ G V +A E
Sbjct: 327 LADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQE 386
Query: 379 LIGLMKKRFPKSGDMWN 395
M F S D+W
Sbjct: 387 FFSQM-DFFGISPDIWT 402
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 131/313 (41%), Gaps = 4/313 (1%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D +A++ + L + N +E++ R +R N + + ++ A +
Sbjct: 189 DIVAYNAIIDSLCKTKRVNDAFDFFKEIE-RKGIRPNVVTYTALVNGLCNSSRWSDAARL 247
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
+M K + +V +ALL + + E K +F E ++ I+P+ TY+ +I C
Sbjct: 248 LSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRM-SIDPDIVTYSSLINGLC 306
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+ M K + + L+ GF K + ED K+ + M + G+ S
Sbjct: 307 LHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTV 366
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
YN IQ + ++A+ M GI P++ TY L+ G G LE A +F M
Sbjct: 367 TYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKV-CRASMAKGWVPHFSTMKSLVTGLASISK 372
+ D + +C+ G+ E A + C S+ KG P T ++++GL +
Sbjct: 427 QKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSL-KGLKPDIVTYTTMMSGLCTKGL 485
Query: 373 VAEANELIGLMKK 385
+ E L MK+
Sbjct: 486 LHEVEALYTKMKQ 498
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 91/191 (47%), Gaps = 1/191 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
ID A Q F+ M G V + N L+ G +K E+ ++F E + G+ N+ TYN
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ-RGLVSNTVTYN 369
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I+ F ++GD ++M I P+ + +LL G + E + + M+K
Sbjct: 370 TLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR 429
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
+ + Y I+ +CK + EEA +L + +G+KP++ TY ++ G +G L
Sbjct: 430 EMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEV 489
Query: 307 KKLFASMTNGG 317
+ L+ M G
Sbjct: 490 EALYTKMKQEG 500
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%)
Query: 204 ILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC 263
+ ++M + P+ DF LL+ K KY+ V + + ME GI + + +NI I C
Sbjct: 72 LFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFC 131
Query: 264 KLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY 323
+ A ++L ML G +P+ T L++GF + + A L M G +PD
Sbjct: 132 CCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIV 191
Query: 324 CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383
+ LC+ A + KG P+ T +LV GL + S+ ++A L+ M
Sbjct: 192 AYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Query: 384 KKR 386
K+
Sbjct: 252 IKK 254
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 121/260 (46%), Gaps = 5/260 (1%)
Query: 133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192
++EM + ++ +V N ++ + + + + + KVYG PN +YN +I +
Sbjct: 210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDM-KVYGCSPNVVSYNTLIDGY 268
Query: 193 CESGDSSSVY---SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
C+ G + +Y ++L EM + PN T F +L+ GF+K+ KV + M +
Sbjct: 269 CKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVK 328
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
V YN I LC + EA ++ D M+S G++PNL TY LI+GF K L+ A +
Sbjct: 329 PNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDM 388
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
F S+ G P + + M C+ G+ + + +G VP T L+ GL
Sbjct: 389 FGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCR 448
Query: 370 ISKVAEANELIG-LMKKRFP 388
+ A +L L K P
Sbjct: 449 NGNIEAAKKLFDQLTSKGLP 468
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 132/312 (42%), Gaps = 6/312 (1%)
Query: 77 AFSIAVSKLSQANHFNAISQLLEELKT---RPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
F++ ++ L + N ++E++K P++ L G M A
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY-KADAV 283
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
+EM + + ++ N L+ G N ++F E ++PN +YN +I C
Sbjct: 284 LKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLD-QDVKPNVISYNSLINGLC 342
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
G S S+ +M ++PN + L+ GF K ++ + ++ G
Sbjct: 343 NGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTR 402
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
+YN+ I + CKL + ++ AL + M GI P++ TY LI G + GN+E AKKLF +
Sbjct: 403 MYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQL 462
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
T+ G PD F + C+ GE A + + G P T ++ G +
Sbjct: 463 TSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNL 521
Query: 374 AEANELIGLMKK 385
A + M+K
Sbjct: 522 KAATNMRTQMEK 533
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 3/181 (1%)
Query: 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTE 171
R + I Y + ID EEM++ G+ V N L+ G + N E K++F +
Sbjct: 402 RMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQ 461
Query: 172 FPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH 231
G+ P+ T++ +++ +C G+S +L EM + ++P + +++ G+ KE
Sbjct: 462 LTS-KGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEG 519
Query: 232 KYEDVGKVLQMMEK-CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY 290
+ + MEK + V YN+ +Q + + E+A LL+ ML +G+ PN TY
Sbjct: 520 NLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITY 579
Query: 291 K 291
+
Sbjct: 580 E 580
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK---------- 272
L+ KE++ DV V + M + I V +N+ I +LCK + +A+
Sbjct: 194 LMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253
Query: 273 ---------ALLDG-------------------MLSRGIKPNLDTYKHLIHGFGKEGNLE 304
L+DG M+ + PNL T+ LI GF K+ NL
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP 313
Query: 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364
G+ K+F M + +P+ + LC GG+ A+ + ++ G P+ T +L+
Sbjct: 314 GSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Query: 365 TGLASISKVAEANELIGLMK 384
G + EA ++ G +K
Sbjct: 374 NGFCKNDMLKEALDMFGSVK 393
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 43/187 (22%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR--PDLRQNERFHVHSIVLYGQANMIDHAM 131
D ++ ++ L + + A +L ++L ++ PDL FH+ + Y + A
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVT---FHIL-MEGYCRKGESRKAA 490
Query: 132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191
+EM K GL+ P TYN V+K
Sbjct: 491 MLLKEMSKMGLK------------------------------------PRHLTYNIVMKG 514
Query: 192 FCESGDSSSVYSILAEM-RRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
+C+ G+ + ++ +M + + +R N + +LL G+ ++ K ED +L M + G+
Sbjct: 515 YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVP 574
Query: 251 GVNVYNI 257
Y I
Sbjct: 575 NRITYEI 581
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 141/316 (44%), Gaps = 8/316 (2%)
Query: 74 DRMAFSIAVSKL---SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHA 130
D + FS V+ + + A+ + E+K RPDL ++ + L G+ + A
Sbjct: 139 DTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTL-INGLCLKGR---VSEA 194
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
+ + M +YG + +L S N +F + + I+ + Y+ VI
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEE-RNIKASVVQYSIVID 253
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
S C+ G S+ EM K I+ + + L+ G + K++D K+L+ M I
Sbjct: 254 SLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIP 313
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
V ++ I K + EAK L + M++RGI P+ TY LI GF KE L A ++F
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMF 373
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
M + GCEPD + + C+ + +++ R +KG +P+ T +LV G
Sbjct: 374 DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQS 433
Query: 371 SKVAEANELIGLMKKR 386
K+ A EL M R
Sbjct: 434 GKLNAAKELFQEMVSR 449
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 138/300 (46%), Gaps = 10/300 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVL-YGQANMIDH 129
D + FS + + +L E+ TR PD +S++ + + N +
Sbjct: 314 DVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD-----TITYNSLIDGFCKENCLHE 368
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A Q F+ M G + + L+ +K ++ R+F E G+ PN+ TYN ++
Sbjct: 369 ANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS-KGLIPNTITYNTLV 427
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
FC+SG ++ + EM + + P+ +G+LL G + ++ + M+K +
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
G+ +YNI I +C + ++A +L + +G+KP++ TY +I G K+G+L A L
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADML 547
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
F M GC PD + + + G +++++ G+ ST+K ++ L+
Sbjct: 548 FRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 607
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 122/256 (47%), Gaps = 1/256 (0%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A+ F +M++ ++ SV + ++ ++++ +F E ++ GI+ + TY+ +I
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM-EMKGIKADVVTYSSLI 287
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
C G +L EM ++I P+ F L+ F KE K + ++ M GIA
Sbjct: 288 GGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIA 347
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
YN I CK EA + D M+S+G +P++ TY LI+ + K ++ +L
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
F +++ G P++ + CQ G+ A ++ + +++G P T L+ GL
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCD 467
Query: 370 ISKVAEANELIGLMKK 385
++ +A E+ M+K
Sbjct: 468 NGELNKALEIFEKMQK 483
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 87/210 (41%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G EP++ T++ ++ FC G S +++ M RP+ L+ G + + +
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEA 194
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M + G Y + LCK S A L M R IK ++ Y +I
Sbjct: 195 LVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS 254
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
K+G+ + A LF M G + D + LC G+++ K+ R + + +P
Sbjct: 255 LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPD 314
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
T +L+ K+ EA EL M R
Sbjct: 315 VVTFSALIDVFVKEGKLLEAKELYNEMITR 344
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 129/318 (40%), Gaps = 18/318 (5%)
Query: 72 PLDRMA--FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDH 129
PL+R A F+ + K + H+++I T L ER + + ++
Sbjct: 7 PLNRKASNFTQILEKGTSLLHYSSI--------TEAKLSYKERLRNGIVDIK-----VND 53
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A+ FE M + + N L +K Y+ V F + ++ GIE + T +I
Sbjct: 54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLG-FCKGMELNGIEHDMYTMTIMI 112
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY-EDVGKVLQMMEKCGI 248
+C +S+L + P+ F L+ GF E + E V V +M+E
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172
Query: 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308
V V + I LC R EA L+D M+ G +P+ TY +++ K GN A
Sbjct: 173 PDLVTVSTL-INGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALD 231
Query: 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368
LF M + + + LC+ G ++ AL + KG T SL+ GL
Sbjct: 232 LFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLC 291
Query: 369 SISKVAEANELIGLMKKR 386
+ K + +++ M R
Sbjct: 292 NDGKWDDGAKMLREMIGR 309
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 132/310 (42%), Gaps = 2/310 (0%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D +++S V+ + + + +L+E +K R L+ N + I L + + A +
Sbjct: 280 DVISYSTVVNGYCRFGELDKVWKLIEVMK-RKGLKPNSYIYGSIIGLLCRICKLAEAEEA 338
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
F EM + G+ L+ G + + F E I P+ TY +I FC
Sbjct: 339 FSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDVLTYTAIISGFC 397
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+ GD + EM K + P++ F L+ G+ K +D +V M + G + V
Sbjct: 398 QIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVV 457
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
Y I LCK + A LL M G++PN+ TY +++G K GN+E A KL
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
G D+ + C+ GE + A ++ + + KG P T L+ G +
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577
Query: 374 AEANELIGLM 383
+ +L+ M
Sbjct: 578 EDGEKLLNWM 587
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 112/383 (29%), Positives = 169/383 (44%), Gaps = 53/383 (13%)
Query: 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVS-----KLSQANHFNAISQLLEEL 101
AR + +SN + +C LA S ++A S+ S KL+ + F LL +
Sbjct: 111 ARSRRDSN---LESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLL--V 165
Query: 102 KTRPDLRQNER-FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK 160
T D + R F V VL ++ A + FE+M YGL SVD+ N L LSK
Sbjct: 166 YTYKDWGSDPRVFDVFFQVLV-DFGLLREARRVFEKMLNYGLVLSVDSCNVYLTR--LSK 222
Query: 161 N-YEEVKRI--FTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA 217
+ Y+ I F EFP+V G+ N +YN VI C+ G + +L M K P+
Sbjct: 223 DCYKTATAIIVFREFPEV-GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDV 281
Query: 218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL---CKLKRSEEA--- 271
+ ++ G+ + + + V K++++M++ G+ +Y I L CKL +EEA
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 272 -------------KALLDG----------------MLSRGIKPNLDTYKHLIHGFGKEGN 302
L+DG M SR I P++ TY +I GF + G+
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Query: 303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS 362
+ A KLF M G EPDS F C+ G + A +V + G P+ T +
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461
Query: 363 LVTGLASISKVAEANELIGLMKK 385
L+ GL + ANEL+ M K
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWK 484
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 133/313 (42%), Gaps = 2/313 (0%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D + ++ + + A S+ E+ +R D+ + + I + Q + A +
Sbjct: 350 DTVVYTTLIDGFCKRGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
F EM GL L+ G + + ++ R+ + G PN TY +I C
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA-GCSPNVVTYTTLIDGLC 467
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+ GD S +L EM + ++PN + ++ G K E+ K++ E G+ +
Sbjct: 468 KEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTV 527
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
Y + + CK ++A+ +L ML +G++P + T+ L++GF G LE +KL M
Sbjct: 528 TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWM 587
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
G P++ F C + A + + ++G P T ++LV G +
Sbjct: 588 LAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNM 647
Query: 374 AEANELIGLMKKR 386
EA L MK +
Sbjct: 648 KEAWFLFQEMKGK 660
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 128/312 (41%), Gaps = 2/312 (0%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D + ++ +S Q +L E+ + L + I Y +A + A +
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCK-GLEPDSVTFTELINGYCKAGHMKDAFRV 443
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
M + G +V L+ G + + + E K+ G++PN TYN ++ C
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI-GLQPNIFTYNSIVNGLC 502
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+SG+ ++ E + + + L+ + K + + ++L+ M G+ +
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
+N+ + C E+ + LL+ ML++GI PN T+ L+ + NL+ A ++ M
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
+ G PD + C+ + A + + KG+ ST L+ G K
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 682
Query: 374 AEANELIGLMKK 385
EA E+ M++
Sbjct: 683 LEAREVFDQMRR 694
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 95/238 (39%), Gaps = 36/238 (15%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A + EM K GL+ ++ N+++ G S N EE ++ EF + G+ ++ TY
Sbjct: 472 LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGLNADTVTYT 530
Query: 187 KVIKSFCESGDSSSVYSILAEMR-----------------------------------RK 211
++ ++C+SG+ IL EM K
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Query: 212 SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA 271
I PNAT F L+ + + + + + M G+ Y ++ CK + +EA
Sbjct: 591 GIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEA 650
Query: 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT 329
L M +G ++ TY LI GF K A+++F M G D F F+
Sbjct: 651 WFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFS 708
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 22/238 (9%)
Query: 169 FTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI----------LAEMRRKSIRPNAT 218
F E PK+ + + ++ ++ ++ + G V+ + L E RR +
Sbjct: 145 FWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARR--VFEKML 202
Query: 219 DFGLLLA----GFYKEHKYEDVGK------VLQMMEKCGIASGVNVYNIRIQSLCKLKRS 268
++GL+L+ Y +D K V + + G+ V YNI I +C+L R
Sbjct: 203 NYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRI 262
Query: 269 EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMF 328
+EA LL M +G P++ +Y +++G+ + G L+ KL M G +P+SY +
Sbjct: 263 KEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSI 322
Query: 329 TYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
LC+ + A + + +G +P +L+ G + A++ M R
Sbjct: 323 IGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSR 380
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 78/193 (40%), Gaps = 34/193 (17%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNAL---------------LLGCILSKNYEEV 165
Y ++ +D A + +EM GL+ ++ N L LL +L+K
Sbjct: 536 YCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595
Query: 166 KRIFTEFPKVY-------------------GIEPNSETYNKVIKSFCESGDSSSVYSILA 206
F K Y G+ P+ +TY ++K C++ + + +
Sbjct: 596 ATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQ 655
Query: 207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK 266
EM+ K + + + +L+ GF K K+ + +V M + G+A+ +++ + K K
Sbjct: 656 EMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSDTKYKGK 715
Query: 267 RSEEAKALLDGML 279
R + +D ++
Sbjct: 716 RPDTIVDPIDEII 728
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 1/256 (0%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
AM+ +M++ ++ + ++ G + + +F E ++ G + + TYN +I
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM-EIKGFKADIITYNTLI 305
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
FC +G +L +M ++ I PN F +L+ F KE K + ++L+ M + GIA
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
YN I CK R EEA ++D M+S+G P++ T+ LI+G+ K ++ +L
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
F M+ G ++ + CQ G+ E A K+ + +++ P + K L+ GL
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485
Query: 370 ISKVAEANELIGLMKK 385
++ +A E+ G ++K
Sbjct: 486 NGELEKALEIFGKIEK 501
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 118/260 (45%), Gaps = 1/260 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+ A++ + M + G + ++ LN L+ G L+ + + + G +PN TY
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVET-GFQPNEVTYG 232
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
V+ C+SG ++ +L +M ++I+ +A + +++ G K+ ++ + ME
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIK 292
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G + + YN I C R ++ LL M+ R I PN+ T+ LI F KEG L A
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREA 352
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+L M G P++ + C+ E A+++ ++KG P T L+ G
Sbjct: 353 DQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILING 412
Query: 367 LASISKVAEANELIGLMKKR 386
+++ + EL M R
Sbjct: 413 YCKANRIDDGLELFREMSLR 432
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 119/269 (44%), Gaps = 2/269 (0%)
Query: 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132
LD + +SI + L + + L E++ + + + + I + A D +
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG-FKADIITYNTLIGGFCNAGRWDDGAK 319
Query: 133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192
+M K + +V + L+ + E ++ E + GI PN+ TYN +I F
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ-RGIAPNTITYNSLIDGF 378
Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
C+ ++ M K P+ F +L+ G+ K ++ +D ++ + M G+ +
Sbjct: 379 CKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 438
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
YN +Q C+ + E AK L M+SR ++P++ +YK L+ G G LE A ++F
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 498
Query: 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETA 341
+ E D + + + +C + + A
Sbjct: 499 IEKSKMELDIGIYMIIIHGMCNASKVDDA 527
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 128/294 (43%), Gaps = 2/294 (0%)
Query: 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFE 135
+ FS+ + + QLL+E+ R + N + I + + N ++ A+Q +
Sbjct: 334 VTFSVLIDSFVKEGKLREADQLLKEMMQRG-IAPNTITYNSLIDGFCKENRLEEAIQMVD 392
Query: 136 EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195
M G + N L+ G + ++ +F E + G+ N+ TYN +++ FC+S
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMS-LRGVIANTVTYNTLVQGFCQS 451
Query: 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY 255
G + EM + +RP+ + +LL G + E ++ +EK + + +Y
Sbjct: 452 GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511
Query: 256 NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315
I I +C + ++A L + +G+K + Y +I ++ +L A LF MT
Sbjct: 512 MIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTE 571
Query: 316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
G PD + + + TA ++ + G+ ST+K ++ L+S
Sbjct: 572 EGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSS 625
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 5/254 (1%)
Query: 135 EEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV--YGIEPNSETYNKVIKSF 192
++M+ G+ S+ L ++++ C ++ F+ K+ G EP++ +N ++
Sbjct: 112 KQMESKGIAHSIYTL-SIMINCFC--RCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGL 168
Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
C S ++ M +P L+ G K D ++ M + G
Sbjct: 169 CLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNE 228
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
Y + +CK ++ A LL M R IK + Y +I G K+G+L+ A LF
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 288
Query: 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372
M G + D + C G ++ K+ R + + P+ T L+ K
Sbjct: 289 MEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK 348
Query: 373 VAEANELIGLMKKR 386
+ EA++L+ M +R
Sbjct: 349 LREADQLLKEMMQR 362
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 126/318 (39%), Gaps = 7/318 (2%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHV--HSIVLYGQANMIDHAM 131
D + ++ + A ++ ++LL ++ R F V S V G+ + A
Sbjct: 297 DIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK---LREAD 353
Query: 132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191
Q +EM + G+ + N+L+ G EE ++ + G +P+ T+N +I
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM-VDLMISKGCDPDIMTFNILING 412
Query: 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG 251
+C++ + EM + + N + L+ GF + K E K+ Q M +
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPD 472
Query: 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA 311
+ Y I + LC E+A + + ++ ++ Y +IHG ++ A LF
Sbjct: 473 IVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFC 532
Query: 312 SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS 371
S+ G + D+ + + LC+ A + R +G P T L+
Sbjct: 533 SLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDD 592
Query: 372 KVAEANELIGLMKKR-FP 388
A ELI MK FP
Sbjct: 593 DATTAAELIEEMKSSGFP 610
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 4/232 (1%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y +AN ID ++ F EM G+ + N L+ G S E K++F E + P
Sbjct: 413 YCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS-RRVRP 471
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ +Y ++ C++G+ I ++ + + + + +++ G K +D +
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ G+ YNI I LC+ +A L M G P+ TY LI +
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG---GEYETALKVCRASM 349
+ A +L M + G D M L G + L RAS+
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTRASL 643
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%)
Query: 215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL 274
P DF L + K +YE V + + ME GIA + +I I C+ ++ A +
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ 334
+ ++ G +P+ + L++G E + A +L M G +P LC
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 335 GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
G+ A+ + + G+ P+ T ++ + + A A EL+ M++R
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER 257
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Query: 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK----YED 235
P +N++ + ++ V ++ +M K I + +++ F + K +
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295
+GK++++ G ++N + LC R EA L+D M+ G KP L T L++
Sbjct: 146 MGKIMKL----GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVN 201
Query: 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
G G + A L M G +P+ + +C+ G+ A+++ R
Sbjct: 202 GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 40/328 (12%)
Query: 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKR 167
R N + I + Q + AM+ +EM + G+ + N+L++G +K +E +
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508
Query: 168 IFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN----------- 216
E + G++PN+ TY I + E+ + +S + EMR + PN
Sbjct: 509 FLVEMVE-NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEY 567
Query: 217 ------------------------ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
A + +L+ G +K K +D ++ + M GIA V
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
Y + I KL ++A ++ D M+ G+ PN+ Y L+ GF + G +E AK+L
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Query: 313 MTNGGCEPD--SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
M+ G P+ +YC + Y C+ G+ A ++ KG VP +LV G +
Sbjct: 688 MSVKGLHPNAVTYCTIIDGY--CKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRL 745
Query: 371 SKVAEANELIGLMKKRFPKSGDMWNAAL 398
+ V A + G KK S +NA +
Sbjct: 746 NDVERAITIFGTNKKGCASSTAPFNALI 773
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 2/314 (0%)
Query: 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132
LD +S+ + L + + +A L+ E+ + + + I + + +++ A
Sbjct: 310 LDNHTYSLLIDGLLKGRNADAAKGLVHEMVSH-GINIKPYMYDCCICVMSKEGVMEKAKA 368
Query: 133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192
F+ M GL A +L+ G KN + + E K I + TY V+K
Sbjct: 369 LFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKK-RNIVISPYTYGTVVKGM 427
Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
C SGD Y+I+ EM RPN + L+ F + ++ D +VL+ M++ GIA +
Sbjct: 428 CSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDI 487
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
YN I L K KR +EA++ L M+ G+KPN TY I G+ + A K
Sbjct: 488 FCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKE 547
Query: 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372
M G P+ C+ G+ A R+ + +G + T L+ GL K
Sbjct: 548 MRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDK 607
Query: 373 VAEANELIGLMKKR 386
V +A E+ M+ +
Sbjct: 608 VDDAEEIFREMRGK 621
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/356 (23%), Positives = 149/356 (41%), Gaps = 57/356 (16%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYGQANM--ID 128
D +++ ++ L + + + ++ E++ + PD+ + +++ G + + +
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV------FSYGVLINGFSKLGNMQ 644
Query: 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188
A F+EM + GL +V N LL G S E+ K + E V G+ PN+ TY +
Sbjct: 645 KASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM-SVKGLHPNAVTYCTI 703
Query: 189 IKSFCESGDSSSVYSILAEMRRKSIRPNA--------------------TDFGL------ 222
I +C+SGD + + + EM+ K + P++ T FG
Sbjct: 704 IDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCA 763
Query: 223 --------LLAGFYKEHKYEDVGKVLQMM-----EKCGIASGVNVYNIRIQSLCKLKRSE 269
L+ +K K E +VL + ++ G + V YNI I LCK E
Sbjct: 764 SSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT-YNIMIDYLCKEGNLE 822
Query: 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT 329
AK L M + + P + TY L++G+ K G +F G EPD + +
Sbjct: 823 AAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVII 882
Query: 330 YFLCQGGEYETALKVCRASMAKGWVPH-----FSTMKSLVTGLASISKVAEANELI 380
+ G AL + AK V ST ++L++G A + ++ A +++
Sbjct: 883 NAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVM 938
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G+ P TY+ +I C+ S+L EM + + + LL+ G K +
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M GI +Y+ I + K E+AKAL DGM++ G+ P Y LI G
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
+ +E N+ +L M Y + +C G+ + A + + +A G P+
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
+L+ S+ +A ++ MK++
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ 481
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 102/259 (39%), Gaps = 1/259 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
++ A EMD G+ + L+ G + +N + K + E +GI Y+
Sbjct: 293 LEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVS-HGINIKPYMYD 351
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
I + G ++ M + P A + L+ G+ +E ++L M+K
Sbjct: 352 CCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKR 411
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
I Y ++ +C + A ++ M++ G +PN+ Y LI F + A
Sbjct: 412 NIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDA 471
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
++ M G PD +C+ L + + A + G P+ T + ++G
Sbjct: 472 MRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISG 531
Query: 367 LASISKVAEANELIGLMKK 385
S+ A A++ + M++
Sbjct: 532 YIEASEFASADKYVKEMRE 550
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGK 238
+PN TYN +I C+ G+ + + +M+ ++ P + LL G+ K + ++
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 239 VLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR-----GIKPNLDTYKHL 293
V GI +Y++ I + K + +A L+D M ++ G K ++ T + L
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRAL 921
Query: 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDS 322
+ GF K G +E A+K+ +M PDS
Sbjct: 922 LSGFAKVGEMEVAEKVMENMVRLQYIPDS 950
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 14/161 (8%)
Query: 220 FGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279
FG+L G+ + E+ V + ++ + + +L + R + + GM+
Sbjct: 154 FGILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMV 213
Query: 280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339
R + ++ TY LI + GN++ K + F F +
Sbjct: 214 ERNVVFDVKTYHMLIIAHCRAGNVQLGKDVL--------------FKTEKEFRTATLNVD 259
Query: 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELI 380
ALK+ + + KG VP T L+ GL I ++ +A L+
Sbjct: 260 GALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLL 300
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 1/254 (0%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A Q F+EM + G+ ++ N L+ G E ++ + K GI PN TYN +I
Sbjct: 287 AFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM-KSDGINPNLITYNTLI 345
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
FC G S+ +++ + + P+ + +L++GF ++ K+++ ME+ GI
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIK 405
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
Y I I + + E+A L M G+ P++ TY LIHGF +G + A +L
Sbjct: 406 PSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRL 465
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
F SM CEP+ + C+ G ALK+ + K P+ ++ + ++ L
Sbjct: 466 FKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCK 525
Query: 370 ISKVAEANELIGLM 383
K EA L+ M
Sbjct: 526 ERKSKEAERLVEKM 539
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 139/319 (43%), Gaps = 12/319 (3%)
Query: 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132
LD +F I + +A LL EL T N + I + I+ A
Sbjct: 161 LDVYSFGILIKGCCEAGEIEKSFDLLIEL-TEFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219
Query: 133 TFEEMDKYGL----RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188
F EM K GL R +N L + + +E +++ + G+ PN TYN V
Sbjct: 220 LFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQED-----GVFPNLYTYNCV 274
Query: 189 IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248
+ C+ G + + + EMR + + N + L+ G +E K + KV+ M+ GI
Sbjct: 275 MNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGI 334
Query: 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308
+ YN I C + + +A +L + SRG+ P+L TY L+ GF ++G+ GA K
Sbjct: 335 NPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAK 394
Query: 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-GWVPHFSTMKSLVTGL 367
+ M G +P + + + E A+++ R SM + G VP T L+ G
Sbjct: 395 MVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL-RLSMEELGLVPDVHTYSVLIHGF 453
Query: 368 ASISKVAEANELIGLMKKR 386
++ EA+ L M ++
Sbjct: 454 CIKGQMNEASRLFKSMVEK 472
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 127/310 (40%), Gaps = 35/310 (11%)
Query: 112 RFHVHSIVL--YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF 169
+F ++ +++ Y Q+ ++ ++ F EM G + N LL + S ++ + F
Sbjct: 93 KFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFF 152
Query: 170 TEF-PKV--------------------------------YGIEPNSETYNKVIKSFCESG 196
E KV +G PN Y +I C+ G
Sbjct: 153 NENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKG 212
Query: 197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYN 256
+ + EM + + N + +L+ G +K + ++ + M++ G+ + YN
Sbjct: 213 EIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYN 272
Query: 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316
+ LCK R+++A + D M RG+ N+ TY LI G +E L A K+ M +
Sbjct: 273 CVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD 332
Query: 317 GCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEA 376
G P+ + C G+ AL +CR ++G P T LV+G + A
Sbjct: 333 GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGA 392
Query: 377 NELIGLMKKR 386
+++ M++R
Sbjct: 393 AKMVKEMEER 402
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 1/201 (0%)
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
K G+ P+ TYN ++ FC GD+S ++ EM + I+P+ + +L+ F +
Sbjct: 365 KSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424
Query: 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL 293
E ++ ME+ G+ V+ Y++ I C + EA L M+ + +PN Y +
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484
Query: 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW 353
I G+ KEG+ A KL M P+ + LC+ + + A ++ + G
Sbjct: 485 ILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGI 544
Query: 354 VPHFSTMKSLVTGLASISKVA 374
P S + SL++ + S V+
Sbjct: 545 DPSTSIL-SLISRAKNDSHVS 564
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 126/280 (45%), Gaps = 3/280 (1%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEFPKVYGIE 179
Y + ++ID A+ +G V + NA+L I SK N + +F E + +
Sbjct: 144 YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES-QVS 202
Query: 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV 239
PN TYN +I+ FC +G+ ++ +M K PN + L+ G+ K K +D K+
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262
Query: 240 LQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299
L+ M G+ + YN+ I LC+ R +E +L M RG + TY LI G+ K
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 300 EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359
EGN A + A M G P + + +C+ G A++ +G P+ T
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382
Query: 360 MKSLVTGLASISKVAEANELIGLMKKR-FPKSGDMWNAAL 398
+LV G + + EA ++ M F S +NA +
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI 422
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 147/333 (44%), Gaps = 6/333 (1%)
Query: 48 RLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDL 107
+L+ + F++L L P + +++++ ++ L + +S +L E+ R
Sbjct: 252 KLRKIDDGFKLLRSMALKGLEP----NLISYNVVINGLCREGRMKEVSFVLTEMNRR-GY 306
Query: 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKR 167
+E + I Y + A+ EM ++GL SV +L+ + N
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAME 366
Query: 168 IFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF 227
F + +V G+ PN TY ++ F + G + Y +L EM P+ + L+ G
Sbjct: 367 -FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Query: 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL 287
K ED VL+ M++ G++ V Y+ + C+ +EA + M+ +GIKP+
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDT 485
Query: 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347
TY LI GF ++ + A L+ M G PD + + C G+ E AL++
Sbjct: 486 ITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNE 545
Query: 348 SMAKGWVPHFSTMKSLVTGLASISKVAEANELI 380
+ KG +P T L+ GL S+ EA L+
Sbjct: 546 MVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 150/356 (42%), Gaps = 54/356 (15%)
Query: 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFE 135
+ ++ + + +A + N + L++++ R L NER + + + Q ++ A +
Sbjct: 346 ITYTSLIHSMCKAGNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEAYRVLR 404
Query: 136 EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195
EM+ G SV NAL+ G ++ E+ + + K G+ P+ +Y+ V+ FC S
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDM-KEKGLSPDVVSYSTVLSGFCRS 463
Query: 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK-------YE-------------- 234
D + EM K I+P+ + L+ GF ++ + YE
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523
Query: 235 -----------DVGKVLQ----MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279
D+ K LQ M+EK G+ V Y++ I L K R+ EAK LL +
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEK-GVLPDVVTYSVLINGLNKQSRTREAKRLLLKLF 582
Query: 280 SRGIKPNLDTYKHLIH---------------GFGKEGNLEGAKKLFASMTNGGCEPDSYC 324
P+ TY LI GF +G + A ++F SM +PD
Sbjct: 583 YEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTA 642
Query: 325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELI 380
+ + + C+ G+ A + + + G++ H T+ +LV L KV E N +I
Sbjct: 643 YNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVI 698
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 1/260 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
I A F+EM + + +V N L+ G + N + +F + + G PN TYN
Sbjct: 186 ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYN 244
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I +C+ + +L M K + PN + +++ G +E + ++V VL M +
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G + YN I+ CK +A + ML G+ P++ TY LIH K GN+ A
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRA 364
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+ M G P+ + Q G A +V R G+ P T +L+ G
Sbjct: 365 MEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALING 424
Query: 367 LASISKVAEANELIGLMKKR 386
K+ +A ++ MK++
Sbjct: 425 HCVTGKMEDAIAVLEDMKEK 444
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 19/125 (15%)
Query: 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGK 238
+P+ YN +I C +GD Y++ EM + + L+ +KE K ++
Sbjct: 637 KPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNS 696
Query: 239 VLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG 298
V+ + + C+L +E+AK L++ G N+D ++
Sbjct: 697 VI----------------VHVLRSCELSEAEQAKVLVEINHREG---NMDVVLDVLAEMA 737
Query: 299 KEGNL 303
K+G L
Sbjct: 738 KDGFL 742
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 114/250 (45%), Gaps = 1/250 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
ID A+ ++M+K + V ++ KN + +FTE GI PN TYN
Sbjct: 236 IDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN-KGIRPNVVTYN 294
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I+ C G S +L++M + I PN F L+ F KE K + K+ M K
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
I + Y+ I C R +EAK + + M+S+ PN+ TY LI GF K +E
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG 414
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+LF M+ G ++ + L Q G+ + A K+ + ++ G P T L+ G
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Query: 367 LASISKVAEA 376
L K+ +A
Sbjct: 475 LCKYGKLEKA 484
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 1/253 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
++ A+ F EMD G+R +V N+L+ + + R+ ++ + I PN T++
Sbjct: 271 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE-RKINPNVVTFS 329
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I +F + G + EM ++SI P+ + L+ GF + ++ + ++M
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
V YN I+ CK KR EE L M RG+ N TY LI G + G+ + A
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+K+F M + G PD + + LC+ G+ E AL V P T ++ G
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509
Query: 367 LASISKVAEANEL 379
+ KV + +L
Sbjct: 510 MCKAGKVEDGWDL 522
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 1/266 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y I A+ ++M + + N L+ G L E + G +P
Sbjct: 160 YCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMV-ARGCQP 218
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY V+ C+ GD S+L +M + I + + ++ D +
Sbjct: 219 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLF 278
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
M+ GI V YN I+ LC R +A LL M+ R I PN+ T+ LI F KE
Sbjct: 279 TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 338
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G L A+KL+ M +PD + + C + A + ++K P+ T
Sbjct: 339 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398
Query: 361 KSLVTGLASISKVAEANELIGLMKKR 386
+L+ G +V E EL M +R
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQR 424
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 1/241 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A FE M +V N L+ G +K EE +F E + G+ N+ TYN
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVGNTVTYN 434
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I+ ++GD I +M + P+ + +LL G K K E V + ++K
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
+ + YNI I+ +CK + E+ L + +G+KPN+ Y +I GF ++G E A
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
LF M G P+S + + G+ + ++ + + G+V ST+ ++
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINM 614
Query: 367 L 367
L
Sbjct: 615 L 615
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 10/323 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT---RPDLRQNERFHVHSIVLYGQANMIDHA 130
D + ++ + L + N L E+ RP++ + + YG+ + A
Sbjct: 254 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSL-IRCLCNYGRWS---DA 309
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
+ +M + + +V +AL+ + E ++++ E K I+P+ TY+ +I
Sbjct: 310 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK-RSIDPDIFTYSSLIN 368
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
FC + M K PN + L+ GF K + E+ ++ + M + G+
Sbjct: 369 GFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG 428
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
YN IQ L + + A+ + M+S G+ P++ TY L+ G K G LE A +F
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
+ EPD Y + + +C+ G+ E + + KG P+ ++++G
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
Query: 371 SKVAEANELIGLMKK--RFPKSG 391
EA+ L MK+ P SG
Sbjct: 549 GLKEEADALFREMKEDGTLPNSG 571
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 1/256 (0%)
Query: 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188
A + ++EM K + + ++L+ G + +E K +F E PN TYN +
Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTL 401
Query: 189 IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248
IK FC++ + EM ++ + N + L+ G ++ + K+ + M G+
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308
+ Y+I + LCK + E+A + + + ++P++ TY +I G K G +E
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521
Query: 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368
LF S++ G +P+ + C+ G E A + R G +P+ T +L+
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581
Query: 369 SISKVAEANELIGLMK 384
A + ELI M+
Sbjct: 582 RDGDKAASAELIKEMR 597
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 1/260 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A+ F EM + S+ N LL I N ++ E + I + +YN
Sbjct: 61 LDDAVDLFGEMVQSRPLPSIVEFNKLL-SAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I FC ++L +M + P+ LL G+ + + ++ M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
+N I L ++ EA AL+D M++RG +P+L TY +++G K G+++ A
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 239
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
L M G E D + LC AL + KG P+ T SL+
Sbjct: 240 LSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 299
Query: 367 LASISKVAEANELIGLMKKR 386
L + + ++A+ L+ M +R
Sbjct: 300 LCNYGRWSDASRLLSDMIER 319
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 1/215 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
+ +A ++ M+ F EM + GL + N L+ G + + + ++IF + G+ P
Sbjct: 405 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS-DGVPP 463
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY+ ++ C+ G + +++ + P+ + +++ G K K ED +
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 523
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ G+ V +Y I C+ EEA AL M G PN TY LI ++
Sbjct: 524 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRD 583
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG 335
G+ + +L M + G D+ M L G
Sbjct: 584 GDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 618
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 85/210 (40%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G EP+ T + ++ +C S +++ +M +PN F L+ G + +K +
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M G + Y + LCK + A +LL M I+ ++ Y +I
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
N+ A LF M N G P+ + LC G + A ++ + + P+
Sbjct: 265 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 324
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
T +L+ K+ EA +L M KR
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 12/308 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYG--QANMID 128
D F+ + L + N + L++ + + PDL + IV+ G + ID
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLV------TYGIVVNGLCKRGDID 238
Query: 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188
A+ ++M++ + V N ++ KN + +FTE GI PN TYN +
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN-KGIRPNVVTYNSL 297
Query: 189 IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248
I+ C G S +L++M + I PN F L+ F KE K + K+ M K I
Sbjct: 298 IRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 357
Query: 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308
+ Y+ I C R +EAK + + M+S+ PN+ TY LI GF K ++ +
Sbjct: 358 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGME 417
Query: 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368
LF M+ G ++ + + Q E + A V + ++ G +P T L+ GL
Sbjct: 418 LFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLC 477
Query: 369 SISKVAEA 376
+ KV A
Sbjct: 478 NNGKVETA 485
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 139/311 (44%), Gaps = 12/311 (3%)
Query: 74 DRMAFSIAVSKLSQANHFN-AISQL--LEELKTRPDLRQNERFHVHSIVLYGQANM--ID 128
D + + I V+ L + + A+S L +E+ K P + +++ ++ N ++
Sbjct: 220 DLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV------IYNTIIDALCNYKNVN 273
Query: 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188
A+ F EMD G+R +V N+L+ + + R+ ++ + I PN T++ +
Sbjct: 274 DALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE-RKINPNVVTFSAL 332
Query: 189 IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248
I +F + G + EM ++SI P+ + L+ GF + ++ + ++M
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 392
Query: 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308
V YN I+ CK KR +E L M RG+ N TY LIHGF + + A+
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452
Query: 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368
+F M + G PD + + LC G+ ETAL V P T ++ G+
Sbjct: 453 VFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC 512
Query: 369 SISKVAEANEL 379
KV + +L
Sbjct: 513 KAGKVEDGWDL 523
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 139/345 (40%), Gaps = 39/345 (11%)
Query: 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL--YGQANMIDHAMQTFE 135
FS +S +++ N F+ + L E+++ +L + + +SI++ + + + + A+
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQ---NLGISHNLYTYSILINCFCRRSQLSLALAVLA 140
Query: 136 EMDKYGLRQSVDALNALL---------------LGCILSKNYEEVKRIFTEFPK------ 174
+M K G + LN+LL +G ++ Y+ F
Sbjct: 141 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHN 200
Query: 175 -------------VYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG 221
V G +P+ TY V+ C+ GD S+L +M + I P +
Sbjct: 201 RASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYN 260
Query: 222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281
++ D + M+ GI V YN I+ LC R +A LL M+ R
Sbjct: 261 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 320
Query: 282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA 341
I PN+ T+ LI F KEG L A+KL+ M +PD + + C + A
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 380
Query: 342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
+ ++K P+ T +L+ G +V E EL M +R
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR 425
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 1/260 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A+ F +M K S+ + LL ++ V + + + GI N TY+
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNL-GISHNLYTYS 120
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I FC S ++LA+M + P+ LL GF ++ D ++ M +
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G +N I L + R+ EA AL+D M+ +G +P+L TY +++G K G+++ A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
L M G EP + LC AL + KG P+ T SL+
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300
Query: 367 LASISKVAEANELIGLMKKR 386
L + + ++A+ L+ M +R
Sbjct: 301 LCNYGRWSDASRLLSDMIER 320
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 1/255 (0%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A + ++EM K + + ++L+ G + +E K +F E PN TYN +I
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLI 403
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
K FC++ + EM ++ + N + L+ GF++ + ++ V + M G+
Sbjct: 404 KGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVL 463
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
+ Y+I + LC + E A + + + ++P++ TY +I G K G +E L
Sbjct: 464 PDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
F S++ G +P+ + C+ G E A + R +G +P T +L+
Sbjct: 524 FCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLR 583
Query: 370 ISKVAEANELIGLMK 384
A + ELI M+
Sbjct: 584 DGDKAASAELIREMR 598
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/307 (21%), Positives = 128/307 (41%), Gaps = 3/307 (0%)
Query: 80 IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK 139
I++++L+ +A++ + +K+RP E + S + + N D + E+M
Sbjct: 52 ISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAI--AKMNKFDLVISLGEQMQN 109
Query: 140 YGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199
G+ ++ ++L+ C ++ + G EP+ T N ++ FC S
Sbjct: 110 LGISHNLYTY-SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRIS 168
Query: 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI 259
S++ +M +P++ F L+ G ++ ++ + ++ M G + Y I +
Sbjct: 169 DAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVV 228
Query: 260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE 319
LCK + A +LL M I+P + Y +I N+ A LF M N G
Sbjct: 229 NGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIR 288
Query: 320 PDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANEL 379
P+ + LC G + A ++ + + P+ T +L+ K+ EA +L
Sbjct: 289 PNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 348
Query: 380 IGLMKKR 386
M KR
Sbjct: 349 YDEMIKR 355
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 1/193 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
+ +A +D M+ F EM + GL + L+ G ++ + + +F + G+ P
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS-DGVLP 464
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY+ ++ C +G + + ++R + P+ + +++ G K K ED +
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ G+ V Y + C+ EEA AL M G P+ TY LI ++
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD 584
Query: 301 GNLEGAKKLFASM 313
G+ + +L M
Sbjct: 585 GDKAASAELIREM 597
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 119/258 (46%), Gaps = 1/258 (0%)
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
D A+ +M+ + V N ++ ++ ++ +F E + GI PN TY+
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM-ETKGIRPNVVTYSS 300
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG 247
+I C G S +L++M K I PN F L+ F KE K+ + K+ M K
Sbjct: 301 LISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
Query: 248 IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307
I + YN + C R ++AK + + M+S+ P++ TY LI GF K +E
Sbjct: 361 IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGT 420
Query: 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
+LF M++ G D+ + L G+ + A KV + ++ G P T L+ GL
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480
Query: 368 ASISKVAEANELIGLMKK 385
+ K+ +A E+ M+K
Sbjct: 481 CNNGKLEKALEVFDYMQK 498
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 107/266 (40%), Gaps = 1/266 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y I A+ ++M + G R L+ G L E + + G +P
Sbjct: 165 YCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQP 223
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
N TY V+ C+ GD+ ++L +M I + F ++ K +D +
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ ME GI V Y+ I LC R +A LL M+ + I PNL T+ LI F KE
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G A+KL+ M +PD + + C + A ++ ++K P T
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403
Query: 361 KSLVTGLASISKVAEANELIGLMKKR 386
+L+ G +V + EL M R
Sbjct: 404 NTLIKGFCKSKRVEDGTELFREMSHR 429
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 141/323 (43%), Gaps = 10/323 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT---RPDLRQNERFHVHSIVLYGQANMIDHA 130
D + F+ + L + H + L +E++T RP++ + + YG+ + A
Sbjct: 259 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL-ISCLCSYGRWS---DA 314
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
Q +M + + ++ NAL+ + + E ++++ + K I+P+ TYN ++
Sbjct: 315 SQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIK-RSIDPDIFTYNSLVN 373
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
FC + M K P+ + L+ GF K + ED ++ + M G+
Sbjct: 374 GFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 433
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
Y IQ L + A+ + M+S G+ P++ TY L+ G G LE A ++F
Sbjct: 434 DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF 493
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
M + D Y + +C+ G+ + + + KG P+ T ++++GL S
Sbjct: 494 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 553
Query: 371 SKVAEANELIGLMKKR--FPKSG 391
+ EA L+ MK+ P SG
Sbjct: 554 RLLQEAYALLKKMKEDGPLPNSG 576
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 115/263 (43%), Gaps = 7/263 (2%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK---VYGIEPNSE 183
+D A+ F M K S+ N LL K ++ V + + + V+G+
Sbjct: 66 LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLY---- 121
Query: 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243
TYN +I FC S ++L +M + P+ LL G+ + D ++ M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL 303
+ G + I L ++ EA AL+D M+ RG +PNL TY +++G K G+
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363
+ A L M E D F LC+ + AL + + KG P+ T SL
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Query: 364 VTGLASISKVAEANELIGLMKKR 386
++ L S + ++A++L+ M ++
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEK 324
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 135/312 (43%), Gaps = 8/312 (2%)
Query: 76 MAFSIAVSKLSQANHFNAISQLLEEL---KTRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132
+ +S +S L ++ SQLL ++ K P+L F+ + ++ A +
Sbjct: 296 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT---FNALIDAFVKEGKFVE-AEK 351
Query: 133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192
+++M K + + N+L+ G + ++ K++F EF P+ TYN +IK F
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMF-EFMVSKDCFPDVVTYNTLIKGF 410
Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
C+S + EM + + + + L+ G + + ++ KV + M G+ +
Sbjct: 411 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 470
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
Y+I + LC + E+A + D M IK ++ Y +I G K G ++ LF S
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530
Query: 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372
++ G +P+ + LC + A + + G +P+ T +L+
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Query: 373 VAEANELIGLMK 384
A + ELI M+
Sbjct: 591 KAASAELIREMR 602
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 89/210 (42%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G EP+ T + ++ +C S +++ +M RP+ F L+ G + +K +
Sbjct: 150 GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEA 209
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M + G + Y + + LCK ++ A LL+ M + I+ ++ + +I
Sbjct: 210 VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDS 269
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
K +++ A LF M G P+ + LC G + A ++ + K P+
Sbjct: 270 LCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPN 329
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
T +L+ K EA +L M KR
Sbjct: 330 LVTFNALIDAFVKEGKFVEAEKLYDDMIKR 359
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%)
Query: 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ 241
S Y +++++ + M + P+ +F LL+ K K++ V + +
Sbjct: 50 SGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGE 109
Query: 242 MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301
M++ I G+ YNI I C+ + A ALL M+ G +P++ T L++G+
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK 361
+ A L M G PD+ F + L + A+ + + +G P+ T
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 362 SLVTGL 367
+V GL
Sbjct: 230 VVVNGL 235
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 116 HSIVLYGQAN--MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173
+SI+L G N ++ A++ F+ M K ++ + ++ G + ++ +F
Sbjct: 473 YSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL- 531
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
+ G++PN TYN +I C Y++L +M+ PN+ + L+ ++
Sbjct: 532 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDK 591
Query: 234 EDVGKVLQMMEKC 246
++++ M C
Sbjct: 592 AASAELIREMRSC 604
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 10/156 (6%)
Query: 72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAM 131
P D M +SI + L ++ + ++ + +++ + + I +A +D
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQ-KSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 132 QTFEEMDKYGLRQSVDALNALLLGC----ILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
F + G++ +V N ++ G +L + Y +K++ + P PNS TYN
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPL-----PNSGTYNT 580
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLL 223
+I++ GD ++ ++ EMR +A+ GL+
Sbjct: 581 LIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLV 616
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 140/313 (44%), Gaps = 9/313 (2%)
Query: 77 AFSIAVSKLSQAN-HFNAISQL--LEELKTRPDLRQNERFHVHSIVLYGQANM-IDHAMQ 132
AFS +S ++ H AIS ++E RP+L + I G+ M +
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVT----YNAVIDACGKGGMEFKQVAK 325
Query: 133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192
F+EM + G++ N+LL C +E + +F E IE + +YN ++ +
Sbjct: 326 FFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR-IEQDVFSYNTLLDAI 384
Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
C+ G + ILA+M K I PN + ++ GF K ++++ + M GIA
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
YN + K+ RSEEA +L M S GIK ++ TY L+ G+GK+G + KK+F
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372
M P+ + +GG Y+ A+++ R + G +L+ L
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564
Query: 373 VAEANELIGLMKK 385
V A LI M K
Sbjct: 565 VGSAVSLIDEMTK 577
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 5/200 (2%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
+ +A D A+ F EM G+ + N LL EE I E V GI+
Sbjct: 419 FAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASV-GIKK 477
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TYN ++ + + G V + EM+R+ + PN + L+ G+ K Y++ ++
Sbjct: 478 DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIF 537
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ + G+ + V +Y+ I +LCK A +L+D M GI PN+ TY +I FG+
Sbjct: 538 REFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRS 597
Query: 301 GNLEGAKKLFASMTNGGCEP 320
++ + A +NGG P
Sbjct: 598 ATMDRS----ADYSNGGSLP 613
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 36/174 (20%)
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN---- 302
G + V ++ I + + EEA ++ + M G++PNL TY +I GK G
Sbjct: 263 GYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQ 322
Query: 303 --------------------------------LEGAKKLFASMTNGGCEPDSYCFFMFTY 330
E A+ LF MTN E D + +
Sbjct: 323 VAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLD 382
Query: 331 FLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384
+C+GG+ + A ++ K +P+ + +++ G A + EA L G M+
Sbjct: 383 AICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436
>sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730
OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1
Length = 638
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 136/329 (41%), Gaps = 40/329 (12%)
Query: 85 LSQANHFNAISQLLEEL-KTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR 143
LS+ F A+ L+EE+ KT P+L + E F V + + ANM+ A++ +EM KYGL
Sbjct: 141 LSKMRQFGAVWGLIEEMRKTNPELIEPELFVV-LMRRFASANMVKKAVEVLDEMPKYGLE 199
Query: 144 QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYS 203
LL + + +E ++F + + + PN + ++ +C G
Sbjct: 200 PDEYVFGCLLDALCKNGSVKEASKVFEDMREKF--PPNLRYFTSLLYGWCREGKLMEAKE 257
Query: 204 ILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC 263
+L +M+ + P+ F LL+G+ K D ++ M K G VN Y + IQ+LC
Sbjct: 258 VLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALC 317
Query: 264 KL-KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG--------------------- 301
+ KR +EA + M G + ++ TY LI GF K G
Sbjct: 318 RTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQ 377
Query: 302 --------------NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347
E +L M GC PD + + C+ GE + A+++
Sbjct: 378 VTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNE 437
Query: 348 SMAKGWVPHFSTMKSLVTGLASISKVAEA 376
A G P T ++ G S + EA
Sbjct: 438 MEANGLSPGVDTFVIMINGFTSQGFLIEA 466
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 2/198 (1%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG-CILSKNYEEVKRIFTEFPKVYGIE 179
Y A + A +M K G +V+ L+ C K +E R+F E + YG E
Sbjct: 281 YAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMER-YGCE 339
Query: 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV 239
+ TY +I FC+ G YS+L +MR+K + P+ + ++ K+ ++E+ ++
Sbjct: 340 ADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLEL 399
Query: 240 LQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299
++ M++ G + +YN+ I+ CKL +EA L + M + G+ P +DT+ +I+GF
Sbjct: 400 IEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTS 459
Query: 300 EGNLEGAKKLFASMTNGG 317
+G L A F M + G
Sbjct: 460 QGFLIEACNHFKEMVSRG 477
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 143/340 (42%), Gaps = 9/340 (2%)
Query: 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPD 106
RL +IL+I G+ P D + +++ +S +A N +L+ + PD
Sbjct: 148 CRLGKTRKAAKILEILEGSGAVP----DVITYNVMISGYCKAGEINNALSVLDRMSVSPD 203
Query: 107 LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVK 166
+ + S+ G+ + AM+ + M + V L+
Sbjct: 204 VVTYNTI-LRSLCDSGK---LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 167 RIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226
++ E + G P+ TYN ++ C+ G L +M +PN ++L
Sbjct: 260 KLLDEM-RDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318
Query: 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
++ D K+L M + G + V +NI I LC+ A +L+ M G +PN
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346
+Y L+HGF KE ++ A + M + GC PD + LC+ G+ E A+++
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438
Query: 347 ASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
+KG P T +++ GLA K +A +L+ M+ +
Sbjct: 439 QLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 168 IFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF 227
I + P+ +G +PNS +YN ++ FC+ L M + P+ + +L
Sbjct: 366 ILEKMPQ-HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424
Query: 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL 287
K+ K ED ++L + G + + YN I L K ++ +A LLD M ++ +KP+
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDT 484
Query: 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRA 347
TY L+ G +EG ++ A K F G P++ F LC+ + + A+
Sbjct: 485 ITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVF 544
Query: 348 SMAKGWVPHFSTMKSLVTGLASISKVAEANELI------GLMKK 385
+ +G P+ ++ L+ GLA EA EL+ GLMKK
Sbjct: 545 MINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK 588
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 7/206 (3%)
Query: 186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK 245
N ++ +G+ + L M P+ L+ GF + K K+L+++E
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG 305
G V YN+ I CK A ++LD M + P++ TY ++ G L+
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQ 222
Query: 306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT 365
A ++ M C PD + + C+ A+K+ +G P T LV
Sbjct: 223 AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVN 282
Query: 366 GLASISKVAEANELIGLMKKRFPKSG 391
G+ ++ EA + + M P SG
Sbjct: 283 GICKEGRLDEAIKFLNDM----PSSG 304
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 3/258 (1%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+ A + F+EM + G+ V +L+ N + +F E + G+ P+S TY
Sbjct: 310 MSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTE-KGLSPSSYTYG 368
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I C+ G+ + ++ EM+ K + F L+ G+ ++ ++ + +ME+
Sbjct: 369 ALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQK 428
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G + V N +LKR +EAK L M+ G+K + +Y +LI + KEGN+E A
Sbjct: 429 GFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEA 488
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM-AKGWVPHFSTMKSLVT 365
K+LF M++ G +P++ + + Y C+ G+ + A K+ RA+M A G P T SL+
Sbjct: 489 KRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKL-RANMEANGMDPDSYTYTSLIH 547
Query: 366 GLASISKVAEANELIGLM 383
G V EA L M
Sbjct: 548 GECIADNVDEAMRLFSEM 565
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 121/278 (43%), Gaps = 1/278 (0%)
Query: 103 TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY 162
+ L +ER + +V + ID ++ F M G++ +V +L ++ G
Sbjct: 181 VKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSGVKITVYSLTIVVEGLCRRGEV 240
Query: 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222
E+ K++ EF V GI+P + TYN +I ++ + D S V +L M++ + N + L
Sbjct: 241 EKSKKLIKEFS-VKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTL 299
Query: 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG 282
L+ K K D K+ M + GI S V+VY I C+ + A L D + +G
Sbjct: 300 LMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKG 359
Query: 283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL 342
+ P+ TY LI G K G + A+ L M + G F C+ G + A
Sbjct: 360 LSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEAS 419
Query: 343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELI 380
+ KG+ T ++ + + + EA + +
Sbjct: 420 MIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWL 457
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 1/205 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y + M+D A ++ M++ G + V N + K Y+E K+ + G++
Sbjct: 409 YCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMME-GGVKL 467
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
++ +Y +I +C+ G+ + EM K ++PNA + +++ + K+ K ++ K+
Sbjct: 468 STVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLR 527
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
ME G+ Y I C +EA L M +G+ N TY +I G K
Sbjct: 528 ANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKA 587
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCF 325
G + A L+ M G D+ +
Sbjct: 588 GKSDEAFGLYDEMKRKGYTIDNKVY 612
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 108/269 (40%), Gaps = 40/269 (14%)
Query: 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY--G 177
+Y M + ++ F+ M K GL S+D + ++ + +K + F ++ G
Sbjct: 163 VYVDNGMFEEGLRVFDYMVKKGL--SIDERSCIVF-LVAAKKRRRIDLCLEIFRRMVDSG 219
Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
++ + V++ C G+ ++ E K I+P A + ++ + K+ + V
Sbjct: 220 VKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSGVE 279
Query: 238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
VL++M+K G+ VYN K+ TY L+
Sbjct: 280 GVLKVMKKDGV-----VYN-------KV-----------------------TYTLLMELS 304
Query: 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
K G + A+KLF M G E D + + + C+ G + A + KG P
Sbjct: 305 VKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSS 364
Query: 358 STMKSLVTGLASISKVAEANELIGLMKKR 386
T +L+ G+ + ++ A L+ M+ +
Sbjct: 365 YTYGALIDGVCKVGEMGAAEILMNEMQSK 393
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 138/288 (47%), Gaps = 12/288 (4%)
Query: 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM--IDHA 130
+DR++++ +S + L+E+ R N + +SI++ G NM ++ A
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDN---YTYSILICGLFNMNKVEEA 607
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
+Q +++ + G+ V + ++ GC ++ EE + F E ++PN+ YN +I+
Sbjct: 608 IQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMS-KNVQPNTVVYNHLIR 666
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
++C SG S + +M+ K I PN+ + L+ G + E+ + + M G+
Sbjct: 667 AYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
V Y I KL + + + LL M S+ + PN TY +I G+ ++GN+ A +L
Sbjct: 727 NVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLL 786
Query: 311 ASMTNGGCEPDSYCFFMFTY-FLCQGGEYETALKVCR----ASMAKGW 353
M G PDS + F Y +L QGG E A K A++ +GW
Sbjct: 787 NEMREKGIVPDSITYKEFIYGYLKQGGVLE-AFKGSDEENYAAIIEGW 833
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR 209
NALL G + +E RI E G + +YN +I C + L EM
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILG-RGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV 580
Query: 210 RKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE 269
++ ++P+ + +L+ G + +K E+ + ++ G+ V Y++ I CK +R+E
Sbjct: 581 KRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTE 640
Query: 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT 329
E + D M+S+ ++PN Y HLI + + G L A +L M +
Sbjct: 641 EGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKH-------------- 686
Query: 330 YFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384
KG P+ +T SL+ G++ IS+V EA L M+
Sbjct: 687 ---------------------KGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 5/232 (2%)
Query: 148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAE 207
A+NA G EE ++F++ + G+ PN T+N VI G + +
Sbjct: 279 AINAFCKG----GKVEEAVKLFSKMEEA-GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEK 333
Query: 208 MRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR 267
M + + P + +L+ G + + D VL+ M K G V VYN I S +
Sbjct: 334 MVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGS 393
Query: 268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM 327
+A + D M+S+G+ TY LI G+ K G + A++L M + G + F
Sbjct: 394 LNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTS 453
Query: 328 FTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANEL 379
LC +++AL+ + + P + +L++GL K ++A EL
Sbjct: 454 VICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALEL 505
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 113/264 (42%), Gaps = 4/264 (1%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A+ F + G+ S N LL + + +++ F K G+ P+ + I
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTAI 280
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
+FC+ G + ++M + PN F ++ G +Y++ + M + G+
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 340
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
+ Y+I ++ L + KR +A +L M +G PN+ Y +LI F + G+L A ++
Sbjct: 341 PTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI 400
Query: 310 FASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369
M + G S + C+ G+ + A ++ + ++ G+ + + S++ L S
Sbjct: 401 KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCS 460
Query: 370 ISKVAEANELIG--LMKKRFPKSG 391
A +G L++ P G
Sbjct: 461 HLMFDSALRFVGEMLLRNMSPGGG 484
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 1/265 (0%)
Query: 122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN 181
G D A E+M + G+ ++ + L+ G +K + + E K G PN
Sbjct: 319 GMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTK-KGFPPN 377
Query: 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ 241
YN +I SF E+G + I M K + ++ + L+ G+ K + ++ ++L+
Sbjct: 378 VIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLK 437
Query: 242 MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301
M G + I LC + A + ML R + P LI G K G
Sbjct: 438 EMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHG 497
Query: 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK 361
A +L+ N G D+ + LC+ G+ + A ++ + + +G V +
Sbjct: 498 KHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYN 557
Query: 362 SLVTGLASISKVAEANELIGLMKKR 386
+L++G K+ EA + M KR
Sbjct: 558 TLISGCCGKKKLDEAFMFLDEMVKR 582
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 3/263 (1%)
Query: 116 HSIVLYG--QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173
+SI++ G +A I A +EM K G +V N L+ I + + + I +
Sbjct: 346 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEI-KDLM 404
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
G+ S TYN +IK +C++G + + +L EM N F ++ +
Sbjct: 405 VSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMF 464
Query: 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL 293
+ + + M ++ G + I LCK + +A L L++G + T L
Sbjct: 465 DSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNAL 524
Query: 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW 353
+HG + G L+ A ++ + GC D + C + + A + +G
Sbjct: 525 LHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGL 584
Query: 354 VPHFSTMKSLVTGLASISKVAEA 376
P T L+ GL +++KV EA
Sbjct: 585 KPDNYTYSILICGLFNMNKVEEA 607
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 109/243 (44%), Gaps = 1/243 (0%)
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
+EM G++ +V +L EE +++F E K +G+ PN TY+ +I +C
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMF-ELMKKHGVLPNLYTYSAMIDGYC 280
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
++G+ Y + E+ + PN FG L+ GF K + + M K G+ +
Sbjct: 281 KTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
VYN I CK EA LL M S + P++ TY LI+G E + A +LF M
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKM 400
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKV 373
N P S + + C+ E AL +C A G P+ T +L+ G ++ +
Sbjct: 401 KNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDI 460
Query: 374 AEA 376
A
Sbjct: 461 KAA 463
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 96/217 (44%), Gaps = 2/217 (0%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G+ P+ Y + + + G S +L EM I+PN + + + +++K E+
Sbjct: 194 GLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEA 253
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
K+ ++M+K G+ + Y+ I CK +A L +L + PN+ + L+ G
Sbjct: 254 EKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDG 313
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
F K L A+ LF M G +P+ Y + + C+ G A+ + + P
Sbjct: 314 FCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPD 373
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMK--KRFPKSG 391
T L+ GL +VAEAN L MK + FP S
Sbjct: 374 VFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSA 410
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 1/205 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
+ +A + A F M K+G+ ++ N L+ G S N E + +E + + P
Sbjct: 314 FCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESL-NLSP 372
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY +I C + + +M+ + I P++ + L+ G+ KE+ E +
Sbjct: 373 DVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLC 432
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
M G+ + ++ I C ++ + A L M +GI P++ TY LI KE
Sbjct: 433 SEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKE 492
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCF 325
N++ A +L++ M G P+ + F
Sbjct: 493 ANMKEALRLYSDMLEAGIHPNDHTF 517
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 1/186 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y I AM + EM G+ V AL+ N +E R++++ + GI P
Sbjct: 454 YCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEA-GIHP 512
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
N T+ ++ F + G S E ++ N F L+ G + +
Sbjct: 513 NDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFF 572
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
M CGI + Y ++ + KR + L M+ GI PNL + L +
Sbjct: 573 SDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQAN 632
Query: 301 GNLEGA 306
G ++ A
Sbjct: 633 GYVKSA 638
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 125/266 (46%), Gaps = 1/266 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
+G+ M++ + + +M + G+ ++ N L+ G + + + +R+F E + I+P
Sbjct: 197 FGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVF-EVMESGRIKP 255
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TYN +IK +C++G + L +M + + + ++ Y + + +
Sbjct: 256 DIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALY 315
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
Q M++ GI + +++ I LCK + E + + M+ +G KPN+ Y LI G+ K
Sbjct: 316 QEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKS 375
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G++E A +L M + G +PD + + LC+ G E AL G +
Sbjct: 376 GSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFY 435
Query: 361 KSLVTGLASISKVAEANELIGLMKKR 386
SL+ GL +V EA L M ++
Sbjct: 436 SSLIDGLGKAGRVDEAERLFEEMSEK 461
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 133/323 (41%), Gaps = 41/323 (12%)
Query: 94 ISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153
+ +++E + +PD+ + I Y +A AM+ +M+ G ++
Sbjct: 244 VFEVMESGRIKPDIVT----YNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMI 299
Query: 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSI 213
C ++ ++ E + GI+ ++ VI C+ G + Y++ M RK
Sbjct: 300 QACYADSDFGSCVALYQEMDE-KGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGS 358
Query: 214 RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA 273
+PN + +L+ G+ K ED ++L M G V Y++ + LCK R EEA
Sbjct: 359 KPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALD 418
Query: 274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF-------- 325
G+ N Y LI G GK G ++ A++LF M+ GC DSYC+
Sbjct: 419 YFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFT 478
Query: 326 -----------------------FMFTYFLCQGGEY-----ETALKVCRASMAKGWVPHF 357
++TY + G + E ALK+ + KG P
Sbjct: 479 KHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTA 538
Query: 358 STMKSLVTGLASISKVAEANELI 380
+ ++L TGL KVA A +++
Sbjct: 539 ACFRALSTGLCLSGKVARACKIL 561
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 112/277 (40%), Gaps = 4/277 (1%)
Query: 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEE 136
AFS+ + L + N + E + R + N + I Y ++ ++ A++
Sbjct: 329 AFSLVIGGLCKEGKLNEGYTVFENM-IRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHR 387
Query: 137 MDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196
M G + V + ++ G + EE F + G+ NS Y+ +I ++G
Sbjct: 388 MIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTC-RFDGLAINSMFYSSLIDGLGKAG 446
Query: 197 DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNVY 255
+ EM K ++ + L+ F K K ++ + + ME+ G V Y
Sbjct: 447 RVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTY 506
Query: 256 NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315
I + + K R+EEA L D M+ +GI P ++ L G G + A K+ +
Sbjct: 507 TILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAP 566
Query: 316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352
G D+ C M LC+ G + A K+ +G
Sbjct: 567 MGVILDAACEDMINT-LCKAGRIKEACKLADGITERG 602
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 6/248 (2%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT-RPD-LRQNERFHVHSIVLYGQANMIDHAM 131
D + +S+ V+ L + + + L+ T R D L N F+ I G+A +D A
Sbjct: 396 DVVTYSVVVNGLCKNGR---VEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAE 452
Query: 132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191
+ FEEM + G + NAL+ + +E +F + G + TY ++
Sbjct: 453 RLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSG 512
Query: 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG 251
+ + + M K I P A F L G K K+L + G+
Sbjct: 513 MFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILD 572
Query: 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA 311
++ I +LCK R +EA L DG+ RG + +I+ K G + A KL
Sbjct: 573 AACEDM-INTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLAMKLMH 631
Query: 312 SMTNGGCE 319
S G E
Sbjct: 632 SKIGIGYE 639
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%)
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
N E Y ++ + D + + +E+++ + L+ F K E++ V
Sbjct: 151 NLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVW 210
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ M++ GI + YN + L + A+ + + M S IKP++ TY +I G+ K
Sbjct: 211 RKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKA 270
Query: 301 GNLEGAKKLFASMTNGGCEPD 321
G + A + M G E D
Sbjct: 271 GQTQKAMEKLRDMETRGHEAD 291
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 1/266 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y + I A+ ++M + G + L+ G L E + + + G +P
Sbjct: 163 YCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQP 221
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY V+ C+ GD ++L +M I+ N F ++ K E +
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLF 281
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
ME GI V YN I LC R +A LL ML + I PN+ T+ LI F KE
Sbjct: 282 TEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKE 341
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G L A+KL M +PD+ + + C + A ++ + ++K +P+ T
Sbjct: 342 GKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401
Query: 361 KSLVTGLASISKVAEANELIGLMKKR 386
+L+ G +V + EL M +R
Sbjct: 402 NTLINGFCKCKRVEDGVELFREMSQR 427
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 1/259 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
ID A+ +M+ ++ +V N ++ ++ E +FTE + GI PN TYN
Sbjct: 239 IDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEM-ETKGIRPNVVTYN 297
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I C G S +L+ M K I PN F L+ F+KE K + K+ + M +
Sbjct: 298 SLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR 357
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
I YN+ I C R +EAK + M+S+ PN+ TY LI+GF K +E
Sbjct: 358 SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDG 417
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+LF M+ G ++ + Q G+ ++A V + ++ T L+ G
Sbjct: 418 VELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHG 477
Query: 367 LASISKVAEANELIGLMKK 385
L S K+ A + ++K
Sbjct: 478 LCSYGKLDTALVIFKYLQK 496
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 119/273 (43%), Gaps = 2/273 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A+ F +M K S+ N LL +E V + E + GI + TY+
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISL-GEQMQTLGISHDLYTYS 122
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
I FC S ++LA+M + P+ LL G+ + D ++ M +
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G + I L ++ EA AL+D M+ RG +P+L TY +++G K G+++ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
L M + + F LC+ E A+ + KG P+ T SL+
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302
Query: 367 LASISKVAEANELI-GLMKKRFPKSGDMWNAAL 398
L + + ++A+ L+ +++K+ + +NA +
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALI 335
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 134/320 (41%), Gaps = 15/320 (4%)
Query: 78 FSIAVSKLSQANHFNAISQLLEELKT---RPDLRQNERFHVHSIVLYGQANMIDHAMQTF 134
F+ + L + H L E++T RP++ ++ + YG+ + A +
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSL-INCLCNYGRWS---DASRLL 316
Query: 135 EEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194
M + + +V NAL+ E +++ E + I+P++ TYN +I FC
Sbjct: 317 SNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQ-RSIDPDTITYNLLINGFCM 375
Query: 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV 254
+ M K PN + L+ GF K + ED ++ + M + G+
Sbjct: 376 HNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVT 435
Query: 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT 314
Y IQ + + A+ + M+S + ++ TY L+HG G L+ A +F +
Sbjct: 436 YTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQ 495
Query: 315 NGGCEPDSYCFFMFTYFLCQGGEYETALKV-CRASMAKGWVPHFSTMKSLVTGLASISKV 373
E + + + +C+ G+ A + C S+ P T ++++GL S +
Sbjct: 496 KSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIK----PDVVTYNTMISGLCSKRLL 551
Query: 374 AEANELIGLMKK--RFPKSG 391
EA++L MK+ P SG
Sbjct: 552 QEADDLFRKMKEDGTLPNSG 571
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 89/210 (42%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G EP+ T + ++ +C S S +++ +M +P+ F L+ G + +K +
Sbjct: 148 GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEA 207
Query: 237 GKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296
++ M + G + Y + LCK + A LL+ M + IK N+ + +I
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDS 267
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
K ++E A LF M G P+ + LC G + A ++ + K P+
Sbjct: 268 LCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPN 327
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKKR 386
T +L+ K+ EA +L M +R
Sbjct: 328 VVTFNALIDAFFKEGKLVEAEKLHEEMIQR 357
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 87/243 (35%), Gaps = 33/243 (13%)
Query: 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET 184
N +D A Q F+ M ++ N L+ G K E+ +F E + G+ N+ T
Sbjct: 377 NRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQ-RGLVGNTVT 435
Query: 185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED--------- 235
Y +I+ F ++GD S + +M + + + +LL G K +
Sbjct: 436 YTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQ 495
Query: 236 -----------------------VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK 272
VG+ + I V YN I LC + +EA
Sbjct: 496 KSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDVVTYNTMISGLCSKRLLQEAD 555
Query: 273 ALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL 332
L M G PN TY LI ++ + + +L M + G D+ + T L
Sbjct: 556 DLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615
Query: 333 CQG 335
G
Sbjct: 616 HDG 618
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 127/269 (47%), Gaps = 3/269 (1%)
Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
I LY + I A++ M + G++ ++ + ++ G + K++ +F + K G
Sbjct: 491 INLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVK-EG 549
Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
++P+ YN +I +FC G+ + EM++ RP F ++ G+ K
Sbjct: 550 MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSL 609
Query: 238 KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
+V MM +CG V+ +N I L + ++ E+A +LD M G+ N TY ++ G+
Sbjct: 610 EVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGY 669
Query: 298 GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357
G+ A + F + N G + D + + C+ G ++AL V + A+ +P
Sbjct: 670 ASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARN-IPRN 728
Query: 358 STMKS-LVTGLASISKVAEANELIGLMKK 385
S + + L+ G A V EA +LI MKK
Sbjct: 729 SFVYNILIDGWARRGDVWEAADLIQQMKK 757
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/385 (20%), Positives = 149/385 (38%), Gaps = 53/385 (13%)
Query: 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPD 106
+LK +N F + + + P D + ++ +S + + Q ++E++
Sbjct: 530 VKLKDWANAFAVFEDMVKEGMKP----DVILYNNIISAFCGMGNMDRAIQTVKEMQ---K 582
Query: 107 LRQNERFHVHSIVLYGQANMID--HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE 164
LR +++G A D +++ F+ M + G +V N L+ G + + E+
Sbjct: 583 LRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEK 642
Query: 165 VKRIFTEFPKVYGIEPNSETYNKVIKSF-------------------------------- 192
I E + G+ N TY K+++ +
Sbjct: 643 AVEILDEM-TLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALL 701
Query: 193 ---CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
C+SG S ++ EM ++I N+ + +L+ G+ + + ++Q M+K G+
Sbjct: 702 KACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVK 761
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
++ Y I + K A ++ M + G+KPN+ TY LI G+ + E A
Sbjct: 762 PDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSC 821
Query: 310 FASMTNGGCEPDSYCFF-MFTYFLCQGG-----EYETALKVCRASMAKGWVPHFSTMKSL 363
+ M G +PD + + T L + Y + +C+ + G + T
Sbjct: 822 YEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVMTICKEMVEAGLIVDMGTAVHW 881
Query: 364 VTGLASISKVAEANELIGLMKKRFP 388
L I A EL ++K FP
Sbjct: 882 SKCLCKIE--ASGGELTETLQKTFP 904
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 127/303 (41%), Gaps = 2/303 (0%)
Query: 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFE 135
+ +S+ V S+A H A +E K R N + I + Q ++ A
Sbjct: 380 VTYSVIVGGFSKAGHAEAADYWFDEAK-RIHKTLNASIYGKIIYAHCQTCNMERAEALVR 438
Query: 136 EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195
EM++ G+ + + ++ G + + ++ +F K G P TY +I + +
Sbjct: 439 EMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRL-KECGFTPTVVTYGCLINLYTKV 497
Query: 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY 255
G S + M+ + ++ N + +++ GF K + + V + M K G+ V +Y
Sbjct: 498 GKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILY 557
Query: 256 NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315
N I + C + + A + M +P T+ +IHG+ K G++ + ++F M
Sbjct: 558 NNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRR 617
Query: 316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE 375
GC P + F L + + E A+++ G + T ++ G AS+ +
Sbjct: 618 CGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGK 677
Query: 376 ANE 378
A E
Sbjct: 678 AFE 680
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 132/327 (40%), Gaps = 47/327 (14%)
Query: 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMID--HAMQTFEEMDK 139
V K+S+A +S++++E + +L+ +S+++ G + D +A FE+M K
Sbjct: 497 VGKISKALE---VSRVMKEEGVKHNLK------TYSMMINGFVKLKDWANAFAVFEDMVK 547
Query: 140 YGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199
G++ V N ++ N + + E K+ P + T+ +I + +SGD
Sbjct: 548 EGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRH-RPTTRTFMPIIHGYAKSGDMR 606
Query: 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS--------- 250
+ MRR P F L+ G ++ + E ++L M G+++
Sbjct: 607 RSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIM 666
Query: 251 ----------------------GVNV----YNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284
G++V Y +++ CK R + A A+ M +R I
Sbjct: 667 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 726
Query: 285 PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKV 344
N Y LI G+ + G++ A L M G +PD + + F + G+ A +
Sbjct: 727 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQT 786
Query: 345 CRASMAKGWVPHFSTMKSLVTGLASIS 371
A G P+ T +L+ G A S
Sbjct: 787 IEEMEALGVKPNIKTYTTLIKGWARAS 813
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/344 (19%), Positives = 133/344 (38%), Gaps = 37/344 (10%)
Query: 75 RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTF 134
R F + V + + + E ++ R + R + I Y +D A+
Sbjct: 309 RTEFGLMVKFYGRRGDMHRARETFERMRAR-GITPTSRIYTSLIHAYAVGRDMDEALSCV 367
Query: 135 EEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194
+M + G+ S+ + ++ G + + E F E +++ N+ Y K+I + C+
Sbjct: 368 RKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKT-LNASIYGKIIYAHCQ 426
Query: 195 SGDSSSVYSILAEMRRKSI-----------------------------------RPNATD 219
+ + +++ EM + I P
Sbjct: 427 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 486
Query: 220 FGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279
+G L+ + K K +V ++M++ G+ + Y++ I KLK A A+ + M+
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546
Query: 280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339
G+KP++ Y ++I F GN++ A + M P + F + + G+
Sbjct: 547 KEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMR 606
Query: 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383
+L+V G VP T L+ GL ++ +A E++ M
Sbjct: 607 RSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEM 650
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 57/139 (41%)
Query: 214 RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA 273
+P+ T+FGL++ + + + + M GI +Y I + + +EA +
Sbjct: 306 KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALS 365
Query: 274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC 333
+ M GI+ +L TY ++ GF K G+ E A F ++ + Y C
Sbjct: 366 CVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHC 425
Query: 334 QGGEYETALKVCRASMAKG 352
Q E A + R +G
Sbjct: 426 QTCNMERAEALVREMEEEG 444
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 5/266 (1%)
Query: 115 VHSIVLYGQANMIDHAMQTFEEM-DKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173
+H V +G+ +D A +M YG+ V N+L+ G + +
Sbjct: 360 IHGFVTHGR---LDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM- 415
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
+ G +PN +Y ++ FC+ G Y++L EM ++PN F L++ F KEH+
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRI 475
Query: 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL 293
+ ++ + M + G V +N I LC++ + A LL M+S G+ N TY L
Sbjct: 476 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535
Query: 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW 353
I+ F + G ++ A+KL M G D + LC+ GE + A + + G
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 354 VPHFSTMKSLVTGLASISKVAEANEL 379
P + L+ GL V EA E
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEF 621
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 118/257 (45%), Gaps = 3/257 (1%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG-CILSKNYEEVKRIFTEFPKVYGIE 179
Y + ++ A++ +M G + +V + L+ G C L K +E + E G++
Sbjct: 399 YWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK-IDEAYNVLNEM-SADGLK 456
Query: 180 PNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV 239
PN+ +N +I +FC+ I EM RK +P+ F L++G + + + +
Sbjct: 457 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 516
Query: 240 LQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299
L+ M G+ + YN I + + +EA+ L++ M+ +G + TY LI G +
Sbjct: 517 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCR 576
Query: 300 EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359
G ++ A+ LF M G P + + LC+ G E A++ + + +G P T
Sbjct: 577 AGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVT 636
Query: 360 MKSLVTGLASISKVAEA 376
SL+ GL ++ +
Sbjct: 637 FNSLINGLCRAGRIEDG 653
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 117/267 (43%), Gaps = 6/267 (2%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
+ N ID A+ +M K+G + L+ E ++ E + G P
Sbjct: 227 FCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEM-FLMGCVP 285
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
++ET+N VI C+ + ++ M + P+ +G L+ G K + + +
Sbjct: 286 DAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLF 345
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML-SRGIKPNLDTYKHLIHGFGK 299
+ K I ++N I R ++AKA+L M+ S GI P++ TY LI+G+ K
Sbjct: 346 YRIPKPEIV----IFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401
Query: 300 EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359
EG + A ++ M N GC+P+ Y + + C+ G+ + A V A G P+
Sbjct: 402 EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG 461
Query: 360 MKSLVTGLASISKVAEANELIGLMKKR 386
L++ ++ EA E+ M ++
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRK 488
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 1/250 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
ID A EM GL+ + N L+ E IF E P+ G +P+ T+N
Sbjct: 440 IDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPR-KGCKPDVYTFN 498
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I CE + +L +M + + N + L+ F + + ++ K++ M
Sbjct: 499 SLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQ 558
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G YN I+ LC+ ++A++L + ML G P+ + LI+G + G +E A
Sbjct: 559 GSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEA 618
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+ M G PD F LC+ G E L + R A+G P T +L++
Sbjct: 619 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678
Query: 367 LASISKVAEA 376
L V +A
Sbjct: 679 LCKGGFVYDA 688
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 109/252 (43%), Gaps = 5/252 (1%)
Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY- 176
I + + + I A++ F EM + G + V N+L+ G +E+K +
Sbjct: 466 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC---EVDEIKHALWLLRDMIS 522
Query: 177 -GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED 235
G+ N+ TYN +I +F G+ ++ EM + + + L+ G + + +
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582
Query: 236 VGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295
+ + M + G A NI I LC+ EEA M+ RG P++ T+ LI+
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLIN 642
Query: 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355
G + G +E +F + G PD+ F +LC+GG A + + G+VP
Sbjct: 643 GLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVP 702
Query: 356 HFSTMKSLVTGL 367
+ T L+ +
Sbjct: 703 NHRTWSILLQSI 714
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 130/312 (41%), Gaps = 8/312 (2%)
Query: 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEE 136
+ + + KL F I +LL ++K + E + + Y +A + E
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDE-GIVFKESLFISIMRDYDKAGFPGQTTRLMLE 171
Query: 137 M-DKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195
M + Y + + N +L + ++ +F + I P T+ V+K+FC
Sbjct: 172 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLS-RKIPPTLFTFGVVMKAFCAV 230
Query: 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY 255
+ S S+L +M + PN+ + L+ K ++ + ++L+ M G +
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290
Query: 256 NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315
N I LCK R EA +++ ML RG P+ TY +L++G K G ++ AK LF +
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP- 349
Query: 316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-GWVPHFSTMKSLVTGLASISKVA 374
+P+ F + G + A V + G VP T SL+ G V
Sbjct: 350 ---KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVG 406
Query: 375 EANELIGLMKKR 386
A E++ M+ +
Sbjct: 407 LALEVLHDMRNK 418
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 1/155 (0%)
Query: 150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR 209
N+L+ G + ++ + +F + + G P++ + N +I C SG EM
Sbjct: 568 NSLIKGLCRAGEVDKARSLFEKMLR-DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMV 626
Query: 210 RKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE 269
+ P+ F L+ G + + ED + + ++ GI +N + LCK
Sbjct: 627 LRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVY 686
Query: 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304
+A LLD + G PN T+ L+ + L+
Sbjct: 687 DACLLLDEGIEDGFVPNHRTWSILLQSIIPQETLD 721
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 2/264 (0%)
Query: 136 EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195
+M K G + +L+ G L EE + + ++ GI+P+ Y +I S C++
Sbjct: 132 KMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEM-GIKPDVVMYTTIIDSLCKN 190
Query: 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY 255
G + S+ +M IRP+ + L+ G ++ D +L+ M K I V +
Sbjct: 191 GHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250
Query: 256 NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315
N I + K + +A+ L + M+ I PN+ TY LI+GF EG ++ A+++F M
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310
Query: 316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE 375
GC PD + C+ + + A+K+ KG + T +L+ G + K
Sbjct: 311 KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNV 370
Query: 376 ANELIGLMKKR-FPKSGDMWNAAL 398
A E+ M R P + +N L
Sbjct: 371 AQEVFSHMVSRGVPPNIRTYNVLL 394
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 115/263 (43%), Gaps = 1/263 (0%)
Query: 124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSE 183
N ++ AM +M + G++ V ++ + + +F + YGI P+
Sbjct: 155 GNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMEN-YGIRPDVV 213
Query: 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243
Y ++ C SG S+L M ++ I+P+ F L+ F KE K+ D ++ M
Sbjct: 214 MYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEM 273
Query: 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL 303
+ IA + Y I C +EA+ + M ++G P++ Y LI+GF K +
Sbjct: 274 IRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKV 333
Query: 304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363
+ A K+F M+ G ++ + Q G+ A +V +++G P+ T L
Sbjct: 334 DDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVL 393
Query: 364 VTGLASISKVAEANELIGLMKKR 386
+ L KV +A + M+KR
Sbjct: 394 LHCLCYNGKVKKALMIFEDMQKR 416
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 95/217 (43%), Gaps = 2/217 (0%)
Query: 174 KVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233
++ G+ + T N ++ FC+S S L +M + P+ F L+ GF ++
Sbjct: 99 QIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRM 158
Query: 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL 293
E+ ++ M + GI V +Y I SLCK A +L D M + GI+P++ Y L
Sbjct: 159 EEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSL 218
Query: 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW 353
++G G A L MT +PD F + G++ A ++ +
Sbjct: 219 VNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSI 278
Query: 354 VPHFSTMKSLVTGLASISKVAEANELIGLMKKR--FP 388
P+ T SL+ G V EA ++ LM+ + FP
Sbjct: 279 APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFP 315
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 136/318 (42%), Gaps = 11/318 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEEL---KTRPDLRQNERFHVHSIVLYGQANMIDHA 130
D + ++ V+ L + + LL + K +PD+ F+ + +D A
Sbjct: 211 DVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT---FNALIDAFVKEGKFLD-A 266
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
+ + EM + + ++ +L+ G + +E +++F + G P+ Y +I
Sbjct: 267 EELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFY-LMETKGCFPDVVAYTSLIN 325
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
FC+ I EM +K + N + L+ GF + K +V M G+
Sbjct: 326 GFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPP 385
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR---GIKPNLDTYKHLIHGFGKEGNLEGAK 307
+ YN+ + LC + ++A + + M R G+ PN+ TY L+HG G LE A
Sbjct: 386 NIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKAL 445
Query: 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
+F M + + + +C+ G+ + A+ + + +KG P+ T ++++GL
Sbjct: 446 MVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGL 505
Query: 368 ASISKVAEANELIGLMKK 385
EA+ L MK+
Sbjct: 506 FREGLKHEAHVLFRKMKE 523
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D AM+ F EM + GL + L+ G + +F+ G+ PN TYN
Sbjct: 333 VDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVS-RGVPPNIRTYN 391
Query: 187 KVIKSFCESGDSSSVYSILAEMRRK---SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243
++ C +G I +M+++ + PN + +LL G K E V + M
Sbjct: 392 VLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM 451
Query: 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL 303
K + G+ Y I IQ +CK + + A L + S+G+KPN+ TY +I G +EG
Sbjct: 452 RKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLK 511
Query: 304 EGAKKLFASMTNGG 317
A LF M G
Sbjct: 512 HEAHVLFRKMKEDG 525
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 85/202 (42%)
Query: 185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244
Y +++++ S + + M P+ DF LL K K++ V + ++
Sbjct: 40 YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQ 99
Query: 245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304
G++ + N+ + C+ + A + L M+ G +P++ T+ LI+GF +E
Sbjct: 100 IMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRME 159
Query: 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364
A + M G +PD + LC+ G AL + G P SLV
Sbjct: 160 EAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLV 219
Query: 365 TGLASISKVAEANELIGLMKKR 386
GL + + +A+ L+ M KR
Sbjct: 220 NGLCNSGRWRDADSLLRGMTKR 241
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/182 (17%), Positives = 81/182 (44%), Gaps = 11/182 (6%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYGQANMIDHA 130
+ + ++ + Q N ++ + +R P++R +H + G+ + A
Sbjct: 351 NTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVL-LHCLCYNGK---VKKA 406
Query: 131 MQTFEEMDKY---GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
+ FE+M K G+ ++ N LL G + E+ +F + K ++ TY
Sbjct: 407 LMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRK-REMDIGIITYTI 465
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG 247
+I+ C++G + ++ + K ++PN + +++G ++E + + + M++ G
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525
Query: 248 IA 249
++
Sbjct: 526 VS 527
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 143/315 (45%), Gaps = 8/315 (2%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG--QANMIDHAM 131
D + F+I V L +A +F L+ ++ + L H ++ ++ G + + +D A+
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQGIL---PNLHTYNTLICGLLRVHRLDDAL 418
Query: 132 QTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFT-EFPKVYGIEPNSETYNKVIK 190
+ F M+ G++ + A ++ K+ + V + T E K GI PN N +
Sbjct: 419 ELFGNMESLGVKPT--AYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLY 476
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
S ++G I ++ + P++ + +++ + K + ++ K+L M + G
Sbjct: 477 SLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP 536
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
V V N I +L K R +EA + M +KP + TY L+ G GK G ++ A +LF
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
M GC P++ F LC+ E ALK+ M G VP T +++ GL
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 656
Query: 371 SKVAEANELIGLMKK 385
+V EA MKK
Sbjct: 657 GQVKEAMCFFHQMKK 671
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 122/284 (42%), Gaps = 21/284 (7%)
Query: 104 RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI------ 157
RP L+ V G+ ID M +EM+ GL+ +V CI
Sbjct: 220 RPSLQTYSSLMVG----LGKRRDIDSVMGLLKEMETLGLKPNVYTFTI----CIRVLGRA 271
Query: 158 --LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRP 215
+++ YE +KR+ E G P+ TY +I + C + + +M+ +P
Sbjct: 272 GKINEAYEILKRMDDE-----GCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKP 326
Query: 216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL 275
+ + LL F + V + MEK G V + I + +LCK EA L
Sbjct: 327 DRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTL 386
Query: 276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG 335
D M +GI PNL TY LI G + L+ A +LF +M + G +P +Y + +F + +
Sbjct: 387 DVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKS 446
Query: 336 GEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANEL 379
G+ +AL+ KG P+ + + LA + EA ++
Sbjct: 447 GDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQI 490
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 129/314 (41%), Gaps = 4/314 (1%)
Query: 83 SKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-YG 141
S L++A NA+S E L R + V I + N + A FE+ K G
Sbjct: 722 SILAEAGIDNAVS-FSERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLG 780
Query: 142 LRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV 201
++ + N L+ G + + E + +F + K G P+ TYN ++ ++ +SG +
Sbjct: 781 VQPKLPTYNLLIGGLLEADMIEIAQDVFLQV-KSTGCIPDVATYNFLLDAYGKSGKIDEL 839
Query: 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL-QMMEKCGIASGVNVYNIRIQ 260
+ + EM N ++++G K +D + +M + Y I
Sbjct: 840 FELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 899
Query: 261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP 320
L K R EAK L +GML G +PN Y LI+GFGK G + A LF M G P
Sbjct: 900 GLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRP 959
Query: 321 DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELI 380
D + + LC G + L + G P ++ GL ++ EA L
Sbjct: 960 DLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLF 1019
Query: 381 GLMKKRFPKSGDMW 394
MK + D++
Sbjct: 1020 NEMKTSRGITPDLY 1033
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 12/314 (3%)
Query: 77 AFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYGQANMIDHAMQT 133
F+I + L +A N ++L+ + PD+ + I A +D A +
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVT----YTVLIDALCTARKLDCAKEV 315
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKN--YEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191
FE+M K G R D + + L S N + VK+ ++E K G P+ T+ ++ +
Sbjct: 316 FEKM-KTG-RHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKD-GHVPDVVTFTILVDA 372
Query: 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG 251
C++G+ + L MR + I PN + L+ G + H+ +D ++ ME G+
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPT 432
Query: 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA 311
Y + I K S A + M ++GI PN+ ++ K G AK++F
Sbjct: 433 AYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFY 492
Query: 312 SMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS 371
+ + G PDS + M + GE + A+K+ M G P + SL+ L
Sbjct: 493 GLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKAD 552
Query: 372 KVAEANELIGLMKK 385
+V EA ++ MK+
Sbjct: 553 RVDEAWKMFMRMKE 566
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 6/224 (2%)
Query: 167 RIFTEFPKVY------GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDF 220
R TE +VY G P+ +TY+ ++ + D SV +L EM ++PN F
Sbjct: 202 RFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTF 261
Query: 221 GLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS 280
+ + + K + ++L+ M+ G V Y + I +LC ++ + AK + + M +
Sbjct: 262 TICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKT 321
Query: 281 RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET 340
KP+ TY L+ F +L+ K+ ++ M G PD F + LC+ G +
Sbjct: 322 GRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGE 381
Query: 341 ALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384
A +G +P+ T +L+ GL + ++ +A EL G M+
Sbjct: 382 AFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME 425
Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 5/252 (1%)
Query: 116 HSIVLYG--QANMIDHAMQTFEE-MDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF 172
H+IV+ G +A +D A+ + + M + L+ G S E K++F E
Sbjct: 858 HNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLF-EG 916
Query: 173 PKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK 232
YG PN YN +I F ++G++ + ++ M ++ +RP+ + +L+ +
Sbjct: 917 MLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR 976
Query: 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM-LSRGIKPNLDTYK 291
++ + +++ G+ V YN+ I L K R EEA L + M SRGI P+L TY
Sbjct: 977 VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYN 1036
Query: 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351
LI G G +E A K++ + G EP+ + F G+ E A V + +
Sbjct: 1037 SLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTG 1096
Query: 352 GWVPHFSTMKSL 363
G+ P+ T + L
Sbjct: 1097 GFSPNTGTYEQL 1108
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 1/247 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
YG++ ID + ++EM + + N ++ G + + N ++ ++ + P
Sbjct: 830 YGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSP 889
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY +I +SG + M RPN + +L+ GF K + + +
Sbjct: 890 TACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALF 949
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ M K G+ + Y++ + LC + R +E + G+ P++ Y +I+G GK
Sbjct: 950 KRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKS 1009
Query: 301 GNLEGAKKLFASM-TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359
LE A LF M T+ G PD Y + L G E A K+ G P+ T
Sbjct: 1010 HRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFT 1069
Query: 360 MKSLVTG 366
+L+ G
Sbjct: 1070 FNALIRG 1076
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 95/228 (41%), Gaps = 3/228 (1%)
Query: 160 KNYEEVKRIFTEFPKVYG---IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN 216
K++ + F+ F V G + +ET N ++++ G + + M+++ I+ +
Sbjct: 93 KSFPDTDSSFSYFKSVAGNLNLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRD 152
Query: 217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLD 276
+ + + + L+ M + G YN I L K + EA +
Sbjct: 153 TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYR 212
Query: 277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG 336
M+ G +P+L TY L+ G GK +++ L M G +P+ Y F + L + G
Sbjct: 213 RMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAG 272
Query: 337 EYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384
+ A ++ + +G P T L+ L + K+ A E+ MK
Sbjct: 273 KINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK 320
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 7/181 (3%)
Query: 78 FSIAVSKLSQANHFNAISQLLEEL---KTRPDLRQNERFHVHSIVLYGQANMIDHAMQTF 134
++I ++ +A +A L + + RPDL+ V + + G+ +D + F
Sbjct: 929 YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVL-VDCLCMVGR---VDEGLHYF 984
Query: 135 EEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194
+E+ + GL V N ++ G S EE +F E GI P+ TYN +I +
Sbjct: 985 KELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGI 1044
Query: 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV 254
+G I E++R + PN F L+ G+ K E V Q M G +
Sbjct: 1045 AGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGT 1104
Query: 255 Y 255
Y
Sbjct: 1105 Y 1105
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 116/274 (42%), Gaps = 37/274 (13%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A++ + + GLR N LL C N + ++F + + + +P+ TYN +I
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM-EAHRCQPDLWTYNAMI 339
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
+ G ++ + E+ K P+A + LL F +E E V +V Q M+K G
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399
Query: 250 --------------------------------SGVN----VYNIRIQSLCKLKRSEEAKA 273
SG N Y + I SL K R+ EA A
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAA 459
Query: 274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC 333
L+ ML GIKP L TY LI G+ K G E A+ F+ M G +PD+ + + L
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519
Query: 334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
+G E A + R ++ G P ++ + ++ GL
Sbjct: 520 RGNETRKAWGLYRDMISDGHTPSYTLYELMILGL 553
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 5/282 (1%)
Query: 107 LRQNERFHVHSIVLYGQANMIDHAMQ----TFEEMDKYGLRQSVDALNALLLGCILSKNY 162
+R V SI + A +D ++ EE+ G + S ++ +L + N
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI 873
Query: 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222
EVK+I++ K G P Y +I+ C+ +++EM + + +
Sbjct: 874 FEVKKIYSSM-KAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNS 932
Query: 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG 282
+L + Y+ +V Q +++ G+ YN I C+ +R EE L+ M + G
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLG 992
Query: 283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL 342
+ P LDTYK LI FGK+ LE A++LF + + G + D + G A
Sbjct: 993 LDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAE 1052
Query: 343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384
K+ + G P +TM L+ +S EA +++ +K
Sbjct: 1053 KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLK 1094
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 141/341 (41%), Gaps = 13/341 (3%)
Query: 46 IARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRP 105
I LKS ILD A L +P D + V + Q + A+ ++ E L R
Sbjct: 134 ILSLKSNQFVADILD----ARLVQMTPTD---YCFVVKSVGQESWQRAL-EVFEWLNLRH 185
Query: 106 DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165
N R + + G+ N A++ F + + V NA++ S + +
Sbjct: 186 WHSPNARMVAAILGVLGRWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKA 244
Query: 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI-LAEMRRKS-IRPNATDFGLL 223
+ + + G P+ ++N +I + +SG + ++ L +M R S +RP+A + L
Sbjct: 245 QELVDAM-RQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTL 303
Query: 224 LAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI 283
L+ ++ + KV + ME + YN I + + EA+ L + +G
Sbjct: 304 LSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGF 363
Query: 284 KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALK 343
P+ TY L++ F +E N E K+++ M G D + + + G+ + AL+
Sbjct: 364 FPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQ 423
Query: 344 VCRASMA-KGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383
+ + G P T L+ L ++ EA L+ M
Sbjct: 424 LYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEM 464
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%)
Query: 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ 241
S Y +I+++ + S++ +R+ P+ + L++ + + YE +
Sbjct: 752 SPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFN 811
Query: 242 MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301
M + G + V NI + +LC R EE +++ + G K + + ++ F + G
Sbjct: 812 TMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAG 871
Query: 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG 335
N+ KK+++SM G P + M LC+G
Sbjct: 872 NIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKG 905
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 79/176 (44%), Gaps = 2/176 (1%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D M ++ + + + QL +++K + + I G+AN A
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
EM G++ ++ +AL+ G + EE + F+ + G +P++ Y+ ++
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRS-GTKPDNLAYSVMLDVLL 519
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK-CGI 248
++ + + +M P+ T + L++ G KE++ +D+ K ++ ME+ CG+
Sbjct: 520 RGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDMEELCGM 575
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/253 (18%), Positives = 93/253 (36%), Gaps = 36/253 (14%)
Query: 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTE 171
R + I L + + A EM++ + + N++L ++Y++ +++
Sbjct: 893 RLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQR 952
Query: 172 FPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH 231
K G+EP+ TYN +I +C Y ++ +MR + P + L++ F K+
Sbjct: 953 I-KETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQK 1011
Query: 232 KYE-----------------------------DVG------KVLQMMEKCGIASGVNVYN 256
E D G K+LQMM+ GI + +
Sbjct: 1012 CLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMH 1071
Query: 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG 316
+ + S +EA+ +L + ++ Y +I + + + + M
Sbjct: 1072 LLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKE 1131
Query: 317 GCEPDSYCFFMFT 329
G EPD + F
Sbjct: 1132 GLEPDHRIWTCFV 1144
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 82/209 (39%), Gaps = 7/209 (3%)
Query: 94 ISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153
+ Q ++E PD E + I++Y + + ++M GL +D +L+
Sbjct: 949 VYQRIKETGLEPD----ETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLI 1004
Query: 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSI 213
K E+ +++F E G++ + Y+ ++K +SG S +L M+ I
Sbjct: 1005 SAFGKQKCLEQAEQLFEELLS-KGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNAGI 1063
Query: 214 RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA 273
P LL+ + ++ KVL ++ + Y+ I + + K
Sbjct: 1064 EPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIE 1123
Query: 274 LLDGMLSRGIKPNLDTYKHLIHG--FGKE 300
L M G++P+ + + F KE
Sbjct: 1124 RLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 6/149 (4%)
Query: 230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLD- 288
EH Y + +V + G + +V + CKL E A +++ ++G
Sbjct: 695 EH-YAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQAETKGFHFACSP 753
Query: 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTYFLCQGGEYETALKVCR 346
Y +I +GK+ + A+ + ++ G PD ++ M Y C G YE A +
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC--GCYERARAIFN 811
Query: 347 ASMAKGWVPHFSTMKSLVTGLASISKVAE 375
M G P ++ L+ L ++ E
Sbjct: 812 TMMRDGPSPTVESINILLHALCVDGRLEE 840
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG 177
I +G+ ++ A Q FEE+ GL+ + ++ S + + +++ + K G
Sbjct: 1004 ISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLL-QMMKNAG 1062
Query: 178 IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVG 237
IEP T + ++ S+ SG+ +L+ ++ + + ++ + + Y
Sbjct: 1063 IEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGI 1122
Query: 238 KVLQMMEKCGIASGVNVYN--IRIQSLCKLK 266
+ L M+K G+ ++ +R S K K
Sbjct: 1123 ERLLEMKKEGLEPDHRIWTCFVRAASFSKEK 1153
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 12/308 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDLRQNERFHVHSIVLYG--QANMID 128
D F+ + L N + L++++ R PDL + V+ G + ID
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLV------TYGTVVNGLCKRGDID 240
Query: 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188
A+ ++M+K + V N ++ G K+ ++ +FTE GI P+ TY+ +
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN-KGIRPDVFTYSSL 299
Query: 189 IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248
I C G S +L++M + I PN F L+ F KE K + K+ M K I
Sbjct: 300 ISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI 359
Query: 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308
+ Y+ I C R +EAK + + M+S+ PN+ TY LI GF K +E +
Sbjct: 360 DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGME 419
Query: 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368
LF M+ G ++ + + Q + + A V + ++ G P+ T L+ GL
Sbjct: 420 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLC 479
Query: 369 SISKVAEA 376
K+A+A
Sbjct: 480 KNGKLAKA 487
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 111/266 (41%), Gaps = 1/266 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y + I A+ ++M + G + L+ G L E + + + G +P
Sbjct: 163 YCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ-RGCQP 221
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY V+ C+ GD S+L +M + I + + ++ G K +D +
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLF 281
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
M+ GI V Y+ I LC R +A LL M+ R I PN+ T+ LI F KE
Sbjct: 282 TEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 341
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G L A+KL+ M +PD + + C + A + ++K P+ T
Sbjct: 342 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401
Query: 361 KSLVTGLASISKVAEANELIGLMKKR 386
+L+ G +V E EL M +R
Sbjct: 402 STLIKGFCKAKRVEEGMELFREMSQR 427
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 1/253 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A+ F EMD G+R V ++L+ + + R+ ++ + I PN T++
Sbjct: 274 MDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE-RKINPNVVTFS 332
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I +F + G + EM ++SI P+ + L+ GF + ++ + ++M
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
V Y+ I+ CK KR EE L M RG+ N TY LIHGF + + + A
Sbjct: 393 DCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA 452
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+ +F M + G P+ + + LC+ G+ A+ V P T ++ G
Sbjct: 453 QMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEG 512
Query: 367 LASISKVAEANEL 379
+ KV + EL
Sbjct: 513 MCKAGKVEDGWEL 525
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 139/324 (42%), Gaps = 12/324 (3%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT---RPDLRQNERFHVHSIVLYGQANMIDHA 130
D + ++ + L + H + L E+ RPD+ + + YG+ + A
Sbjct: 257 DVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSL-ISCLCNYGRWS---DA 312
Query: 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190
+ +M + + +V +AL+ + E ++++ E K I+P+ TY+ +I
Sbjct: 313 SRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK-RSIDPDIFTYSSLIN 371
Query: 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS 250
FC + M K PN + L+ GF K + E+ ++ + M + G+
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431
Query: 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310
Y I + + + A+ + M+S G+ PN+ TY L+ G K G L A +F
Sbjct: 432 NTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVF 491
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKV-CRASMAKGWVPHFSTMKSLVTGLAS 369
+ EPD Y + + +C+ G+ E ++ C S+ KG P+ ++++G
Sbjct: 492 EYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSL-KGVSPNVIAYNTMISGFCR 550
Query: 370 ISKVAEANELIGLMKKR--FPKSG 391
EA+ L+ MK+ P SG
Sbjct: 551 KGSKEEADSLLKKMKEDGPLPNSG 574
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 1/260 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A+ F +M K S+ N LL +E V + E + GI + TY+
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISL-GEQMQTLGISHDLYTYS 122
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
I FC S ++LA+M + P+ LL G+ + D ++ M +
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G + I L ++ EA AL+D M+ RG +P+L TY +++G K G+++ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
L M G E D + LC+ + AL + KG P T SL++
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302
Query: 367 LASISKVAEANELIGLMKKR 386
L + + ++A+ L+ M +R
Sbjct: 303 LCNYGRWSDASRLLSDMIER 322
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 8/253 (3%)
Query: 83 SKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL 142
+L +A H + EL D N + I + +A ++ M+ F EM + GL
Sbjct: 377 DRLDEAKH-------MFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGL 429
Query: 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY 202
+ L+ G +++ + + +F + V G+ PN TYN ++ C++G +
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV-GVHPNILTYNILLDGLCKNGKLAKAM 488
Query: 203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL 262
+ ++R ++ P+ + +++ G K K ED ++ + G++ V YN I
Sbjct: 489 VVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGF 548
Query: 263 CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS 322
C+ EEA +LL M G PN TY LI ++G+ E + +L M + G D+
Sbjct: 549 CRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDA 608
Query: 323 YCFFMFTYFLCQG 335
+ T L G
Sbjct: 609 STIGLVTNMLHDG 621
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 128/291 (43%), Gaps = 2/291 (0%)
Query: 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
D +S +S L ++ S+LL ++ R + N I + + + A +
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKL 350
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
++EM K + + ++L+ G + +E K +F E PN TY+ +IK FC
Sbjct: 351 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYSTLIKGFC 409
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
++ + EM ++ + N + L+ GF++ ++ V + M G+ +
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
YNI + LCK + +A + + + ++P++ TY +I G K G +E +LF ++
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364
+ G P+ + C+ G E A + + G +P+ T +L+
Sbjct: 530 SLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLI 580
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 2/241 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A FE M +V + L+ G +K EE +F E + G+ N+ TY
Sbjct: 379 LDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQ-RGLVGNTVTYT 437
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I F ++ D + + +M + PN + +LL G K K V + +++
Sbjct: 438 TLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 497
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
+ + YNI I+ +CK + E+ L + +G+ PN+ Y +I GF ++G+ E A
Sbjct: 498 TMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEA 557
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
L M G P+S + + G+ E + ++ + + G+ ST+ LVT
Sbjct: 558 DSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI-GLVTN 616
Query: 367 L 367
+
Sbjct: 617 M 617
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 109/266 (40%), Gaps = 1/266 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y I A+ ++M + G R L+ G L E + + G +P
Sbjct: 165 YCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ-RGCQP 223
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
N TY V+ C+ GD +++L +M I N + ++ K +D +
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLF 283
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
ME G+ V Y+ I LC +R +A LL M+ R I PN+ T+ LI F KE
Sbjct: 284 TEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKE 343
Query: 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360
G L A+KL+ M +PD + + C + A + ++K P+ T
Sbjct: 344 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 403
Query: 361 KSLVTGLASISKVAEANELIGLMKKR 386
+L+ G ++ E EL M +R
Sbjct: 404 NTLINGFCKAKRIDEGVELFREMSQR 429
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 1/252 (0%)
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
D A+ F EM+ G+R +V ++L+ + + + R+ ++ + I PN T+N
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIE-RKINPNVVTFNA 335
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG 247
+I +F + G + EM ++SI P+ + L+ GF + ++ + ++M
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395
Query: 248 IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307
V YN I CK KR +E L M RG+ N TY LIHGF + + + A+
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQ 455
Query: 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
+F M + G P+ + LC+ G+ E A+ V P T ++ G+
Sbjct: 456 MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 515
Query: 368 ASISKVAEANEL 379
KV + +L
Sbjct: 516 CKAGKVEDGWDL 527
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 1/250 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
ID A +M+ + +V + ++ ++ ++ +FTE G+ PN TY+
Sbjct: 241 IDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN-KGVRPNVITYS 299
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I C S +L++M + I PN F L+ F KE K + K+ M K
Sbjct: 300 SLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKR 359
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
I + Y+ I C R +EAK + + M+S+ PN+ TY LI+GF K ++
Sbjct: 360 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEG 419
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+LF M+ G ++ + + Q + + A V + ++ G P+ T +L+ G
Sbjct: 420 VELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 479
Query: 367 LASISKVAEA 376
L K+ +A
Sbjct: 480 LCKNGKLEKA 489
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 2/284 (0%)
Query: 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFE 135
+ +S +S L ++ S+LL ++ R F+ + +++ A + ++
Sbjct: 296 ITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE-AEKLYD 354
Query: 136 EMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195
EM K + + ++L+ G + +E K +F E PN TYN +I FC++
Sbjct: 355 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLINGFCKA 413
Query: 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY 255
+ EM ++ + N + L+ GF++ ++ V + M G+ + Y
Sbjct: 414 KRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTY 473
Query: 256 NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315
N + LCK + E+A + + + ++P + TY +I G K G +E LF S++
Sbjct: 474 NTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 533
Query: 316 GGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFST 359
G +PD + C+ G E A + R G +P T
Sbjct: 534 KGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 122/281 (43%), Gaps = 8/281 (2%)
Query: 106 DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165
D R+ R +HS+ L D A+ F M K S+ N LL K ++ V
Sbjct: 52 DYREILRNGLHSMKL-------DDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLV 104
Query: 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLA 225
+ + ++ GI N TYN +I FC S ++L +M + P+ LL
Sbjct: 105 ISLGEKMQRL-GISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLN 163
Query: 226 GFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP 285
G+ + D ++ M + G + I L ++ EA AL+D M+ RG +P
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQP 223
Query: 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVC 345
NL TY +++G K G+++ A L M E + + LC+ + AL +
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLF 283
Query: 346 RASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386
KG P+ T SL++ L + + ++A+ L+ M +R
Sbjct: 284 TEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER 324
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 106/259 (40%), Gaps = 1/259 (0%)
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
D + E+M + G+ ++ N +L+ C ++ + G EP+ T +
Sbjct: 102 DLVISLGEKMQRLGISHNLYTYN-ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160
Query: 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG 247
++ +C S +++ +M RP+ F L+ G + +K + ++ M + G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220
Query: 248 IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307
+ Y + + LCK + A LL+ M + I+ N+ Y +I K + + A
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDAL 280
Query: 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
LF M N G P+ + LC + A ++ + + P+ T +L+
Sbjct: 281 NLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 368 ASISKVAEANELIGLMKKR 386
K+ EA +L M KR
Sbjct: 341 VKEGKLVEAEKLYDEMIKR 359
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%)
Query: 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQ 241
S Y +++++ S + M + P+ +F LL+ K K++ V + +
Sbjct: 50 SGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGE 109
Query: 242 MMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301
M++ GI+ + YNI I C+ + A ALL M+ G +P++ T L++G+
Sbjct: 110 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169
Query: 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK 361
+ A L M G PD+ F + L + A+ + + +G P+ T
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 362 SLVTGLASISKVAEANELIGLMK 384
+V GL + A L+ M+
Sbjct: 230 VVVNGLCKRGDIDLAFNLLNKME 252
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 110/250 (44%), Gaps = 1/250 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
ID A+ +EM G S N L+ G + V ++ + G PN TYN
Sbjct: 238 IDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNM-FLKGCVPNEVTYN 296
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I C G S+L M PN +G L+ G K+ + D ++L ME+
Sbjct: 297 TLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G ++Y++ I L K ++EEA +L M +G KPN+ Y L+ G +EG A
Sbjct: 357 GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEA 416
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
K++ M GC P++Y + + G E A++V + G + L+ G
Sbjct: 417 KEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDG 476
Query: 367 LASISKVAEA 376
L + +V EA
Sbjct: 477 LCGVGRVKEA 486
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 129/307 (42%), Gaps = 5/307 (1%)
Query: 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEE 136
S + + + F+++ +LL ++ + ER + YG+A++ D A+ F
Sbjct: 79 TLSSMIESYANSGDFDSVEKLLSRIRLENRVII-ERSFIVVFRAYGKAHLPDKAVDLFHR 137
Query: 137 M-DKYGLRQSVDALNALLLGCILSKNYE---EVKRIFTEFPKVYGIEPNSETYNKVIKSF 192
M D++ ++SV + N++L I Y E I PN ++N VIK+
Sbjct: 138 MVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKAL 197
Query: 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV 252
C+ + M + P+ + L+ G KE + ++ +L M+ G +
Sbjct: 198 CKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSP 257
Query: 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312
+YN+ I LCK L+D M +G PN TY LIHG +G L+ A L
Sbjct: 258 VIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLER 317
Query: 313 MTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372
M + C P+ + L + A+++ + +G+ + L++GL K
Sbjct: 318 MVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGK 377
Query: 373 VAEANEL 379
EA L
Sbjct: 378 AEEAMSL 384
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 1/259 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A++ F M + L+ G + +E + E + G P+ YN
Sbjct: 203 VDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEM-QSEGCSPSPVIYN 261
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+I C+ GD + V ++ M K PN + L+ G + K + +L+ M
Sbjct: 262 VLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSS 321
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
Y I L K +R+ +A LL M RG N Y LI G KEG E A
Sbjct: 322 KCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEA 381
Query: 307 KKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
L+ M GC+P+ + + LC+ G+ A ++ +A G +P+ T SL+ G
Sbjct: 382 MSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKG 441
Query: 367 LASISKVAEANELIGLMKK 385
EA ++ M K
Sbjct: 442 FFKTGLCEEAVQVWKEMDK 460
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 116/270 (42%), Gaps = 9/270 (3%)
Query: 130 AMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189
A++ M++ G + + L+ G EE ++ + + G +PN Y+ ++
Sbjct: 346 AVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAE-KGCKPNIVVYSVLV 404
Query: 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA 249
C G + IL M PNA + L+ GF+K E+ +V + M+K G +
Sbjct: 405 DGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCS 464
Query: 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKL 309
Y++ I LC + R +EA + ML+ GIKP+ Y +I G G+++ A KL
Sbjct: 465 RNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKL 524
Query: 310 FASM---TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366
+ M +PD + + LC + A+ + + + +G P T + +
Sbjct: 525 YHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNT 584
Query: 367 LASISKVAEAN-----ELIGLMKKRFPKSG 391
L+ S + EL+ + KR SG
Sbjct: 585 LSEKSNSCDKGRSFLEELVVRLLKRQRVSG 614
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 40/258 (15%)
Query: 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR---------------- 209
+++F PK+ + T + +I+S+ SGD SV +L+ +R
Sbjct: 61 EKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFR 120
Query: 210 ---RKSIRPNATD-FGLLLAGFYKEHKYEDVGKVLQMMEKCG------------IASGVN 253
+ + A D F ++ F + + VL ++ G + S +N
Sbjct: 121 AYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMN 180
Query: 254 V--------YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG 305
+ +N+ I++LCKL+ + A + GM R P+ TY L+ G KE ++
Sbjct: 181 MNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDE 240
Query: 306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT 365
A L M + GC P + + LC+ G+ K+ KG VP+ T +L+
Sbjct: 241 AVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIH 300
Query: 366 GLASISKVAEANELIGLM 383
GL K+ +A L+ M
Sbjct: 301 GLCLKGKLDKAVSLLERM 318
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/392 (24%), Positives = 158/392 (40%), Gaps = 23/392 (5%)
Query: 8 RTNFNLKTVNYRNLATSSLLSAGDEAAALTIKEKKRATIARLKSESNPFRILDICCGASL 67
+ + N ++ A S +L+AG + + R + K E F ++ G
Sbjct: 421 KDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYE-KAFSVIREMIGQGF 479
Query: 68 APESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMI 127
P D +S ++ L A+ L EE+K R L + + + + +A +I
Sbjct: 480 IP----DTSTYSKVLNYLCNASKMELAFLLFEEMK-RGGLVADVYTYTIMVDSFCKAGLI 534
Query: 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187
+ A + F EM + G +V AL+ + +K +F E G PN TY+
Sbjct: 535 EQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF-ETMLSEGCLPNIVTYSA 593
Query: 188 VIKSFCESGDSSSVYSILAEM----------------RRKSIRPNATDFGLLLAGFYKEH 231
+I C++G I M S RPN +G LL GF K H
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653
Query: 232 KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK 291
+ E+ K+L M G VY+ I LCK+ + +EA+ + M G L TY
Sbjct: 654 RVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYS 713
Query: 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351
LI + K + A K+ + M C P+ + LC+ G+ + A K+ + K
Sbjct: 714 SLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEK 773
Query: 352 GWVPHFSTMKSLVTGLASISKVAEANELIGLM 383
G P+ T +++ G I K+ EL+ M
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERM 805
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 1/234 (0%)
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
F++ D R +V ALL G S EE +++ + G EPN Y+ +I C
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAM-SMEGCEPNQIVYDALIDGLC 685
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+ G + EM + L+ ++K + + KVL M + A V
Sbjct: 686 KVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVV 745
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
+Y I LCK+ +++EA L+ M +G +PN+ TY +I GFG G +E +L M
Sbjct: 746 IYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERM 805
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
+ G P+ + + C+ G + A + W H + + ++ G
Sbjct: 806 GSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF 859
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 119/302 (39%), Gaps = 14/302 (4%)
Query: 93 AISQLLEELKTRPDLRQNERFHVHSIVL--YGQANMIDHAMQTFEEMDKYGLRQSVDALN 150
+ S LEEL D R ++ ++ + +A+ +D A EM LR L
Sbjct: 215 SFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLR 274
Query: 151 ALLLG-CILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR 209
C + K E + + TE P++ Y K+I CE+ L MR
Sbjct: 275 CFAYSLCKVGKWREALTLVETE-----NFVPDTVFYTKLISGLCEASLFEEAMDFLNRMR 329
Query: 210 RKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE 269
S PN + LL G + + +VL MM G ++N + + C
Sbjct: 330 ATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHS 389
Query: 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN------LEGAKKLFASMTNGGCEPDSY 323
A LL M+ G P Y LI + + L+ A+K ++ M G +
Sbjct: 390 YAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 324 CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383
FT LC G+YE A V R + +G++P ST ++ L + SK+ A L M
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 384 KK 385
K+
Sbjct: 510 KR 511
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 112/292 (38%), Gaps = 36/292 (12%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
+D A + EM ++G ++ ++L+ K + ++ ++ + PN Y
Sbjct: 690 LDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLE-NSCAPNVVIYT 748
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
++I C+ G + Y ++ M K +PN + ++ GF K E ++L+ M
Sbjct: 749 EMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSK 808
Query: 247 GIASGVNVYNIRIQSLCK-------------LKRSE--------------------EAKA 273
G+A Y + I CK +K++ E+
Sbjct: 809 GVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG 868
Query: 274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY--CFFMFTYF 331
LLD + P L Y+ LI K LE A +L + Y +
Sbjct: 869 LLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIES 928
Query: 332 LCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383
LC + ETA ++ KG +P + SL+ GL SK++EA L+ +
Sbjct: 929 LCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLDFI 980
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 94/269 (34%), Gaps = 42/269 (15%)
Query: 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS 182
+A++ + AM M +V + LL GC+ K KR+ + G P+
Sbjct: 314 EASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMM-MMEGCYPSP 372
Query: 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM 242
+ +N ++ ++C SGD S Y K+L+
Sbjct: 373 KIFNSLVHAYCTSGDHSYAY-----------------------------------KLLKK 397
Query: 243 MEKCGIASGVNVYNIRIQSLCKLKRS------EEAKALLDGMLSRGIKPNLDTYKHLIHG 296
M KCG G VYNI I S+C K S + A+ ML+ G+ N
Sbjct: 398 MVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRC 457
Query: 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356
G E A + M G PD+ + +LC + E A + G V
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517
Query: 357 FSTMKSLVTGLASISKVAEANELIGLMKK 385
T +V + +A + M++
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMRE 546
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 140/344 (40%), Gaps = 38/344 (11%)
Query: 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEM 137
F + + LS+ N + Q LEELK+ + F V I Y + M + A+++F M
Sbjct: 95 FGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVL-ISAYAKMGMAEKAVESFGRM 153
Query: 138 DKYGLRQSVDALNALL--------------------LGCILSKNY--------------- 162
++ R V N +L L C S N
Sbjct: 154 KEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGR 213
Query: 163 -EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG 221
+ +++F + GI PN TY +I C+ G + + EM+ P++
Sbjct: 214 TSDAQKMFDDMTG-RGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHN 272
Query: 222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281
LL GF K + + ++L++ EK G G+ Y+ I L + +R +A L ML +
Sbjct: 273 ALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKK 332
Query: 282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA 341
IKP++ Y LI G K G +E A KL +SM + G PD+YC+ LC G E
Sbjct: 333 NIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEG 392
Query: 342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385
+ P T L+ + V EA E+ ++K
Sbjct: 393 RSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEK 436
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 1/211 (0%)
Query: 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236
G+ +S + +I ++ + G + M+ RP+ + ++L +E + +
Sbjct: 122 GVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFML 181
Query: 237 G-KVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295
V M KC + + + I + L K R+ +A+ + D M RGI PN TY LI
Sbjct: 182 AFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILIS 241
Query: 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355
G + G+ + A+KLF M G PDS C+ G A ++ R G+V
Sbjct: 242 GLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVL 301
Query: 356 HFSTMKSLVTGLASISKVAEANELIGLMKKR 386
SL+ GL + +A EL M K+
Sbjct: 302 GLRGYSSLIDGLFRARRYTQAFELYANMLKK 332
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/372 (22%), Positives = 146/372 (39%), Gaps = 57/372 (15%)
Query: 53 SNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR---PDL-- 107
S+ ++ D G ++P +R+ ++I +S L Q + +L E++T PD
Sbjct: 215 SDAQKMFDDMTGRGISP----NRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVA 270
Query: 108 ------------RQNERFHVHSIV--------LYGQANMID---------HAMQTFEEMD 138
R E F + + L G +++ID A + + M
Sbjct: 271 HNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANML 330
Query: 139 KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDS 198
K ++ + L+ G + E+ ++ + P GI P++ YN VIK+ C G
Sbjct: 331 KKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPS-KGISPDTYCYNAVIKALCGRGLL 389
Query: 199 SSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR 258
S+ EM P+A +L+ + + ++ +EK G + V +N
Sbjct: 390 EEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNAL 449
Query: 259 IQSLCKLKRSEEAKALLDGM-----------LSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307
I LCK +EA+ LL M LS + DT + G++ A
Sbjct: 450 IDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDT-------MVESGSILKAY 502
Query: 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367
+ A + G PD + + C+ G+ + ALK+ KG P T +L+ GL
Sbjct: 503 RDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGL 562
Query: 368 ASISKVAEANEL 379
+ + EA +L
Sbjct: 563 HRVGREEEAFKL 574
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/327 (20%), Positives = 123/327 (37%), Gaps = 47/327 (14%)
Query: 97 LLEELKT-RPDLRQNERFH---VHSIVLYGQA--NMIDHAMQTFEEMDKYGLRQSVDALN 150
LLEE ++ + ++ + E F H+I++ ++ A + F E++K G SV N
Sbjct: 388 LLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFN 447
Query: 151 ALLLGCILSKNYEEVKRIFTEFP-----------------------------KVY----- 176
AL+ G S +E + + + K Y
Sbjct: 448 ALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMVESGSILKAYRDLAH 507
Query: 177 ----GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK 232
G P+ +YN +I FC +GD +L ++ K + P++ + L+ G ++ +
Sbjct: 508 FADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGR 567
Query: 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKH 292
E+ K+ K VY + C+ ++ A L L + + +T
Sbjct: 568 EEEAFKLFY--AKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETANE 625
Query: 293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352
+ F KEG E A + + E + ++ LCQ G + AL V K
Sbjct: 626 IEQCF-KEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKK 684
Query: 353 WVPHFSTMKSLVTGLASISKVAEANEL 379
+ + L+ GL ++ A E+
Sbjct: 685 ILVTPPSCVKLIHGLCKREQLDAAIEV 711
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/435 (23%), Positives = 171/435 (39%), Gaps = 78/435 (17%)
Query: 20 NLATSSLLSAGDEAAALTIKEKKRATIARLKSESN---PFRILDICCGASLAPESPLDRM 76
NL + LL+ A + K+ + RL+ ES ++L +PL
Sbjct: 25 NLNVNHLLTESPNHAEI----KELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPL--- 77
Query: 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEE 136
F + + KL+ +++ LL+++K + +E + I +Y Q + + A++ F
Sbjct: 78 TFEVMIRKLAMDGQVDSVQYLLQQMKLQ-GFHCSEDLFISVISVYRQVGLAERAVEMFYR 136
Query: 137 MDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196
+ ++G SV N +L +L +N ++ + K G EPN TYN ++K+ C++
Sbjct: 137 IKEFGCDPSVKIYNHVL-DTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNN 195
Query: 197 DSSSVYSILAEMRRKSIRPNATDF----------GL--------------------LLAG 226
+L EM K P+A + GL L+ G
Sbjct: 196 KVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALING 255
Query: 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286
KEH Y+ ++++ M + GI+ V Y+ I LC + E A + L ML RG PN
Sbjct: 256 LCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPN 315
Query: 287 --------------------LDTYKHLIHGFG----------------KEGNLEGAKKLF 310
LD + +I GFG GN+ A +F
Sbjct: 316 IYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVF 375
Query: 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370
+ M GC P+ + + G + A+ + + G P+ ++V L
Sbjct: 376 SHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRH 435
Query: 371 SKVAEANELIGLMKK 385
SK EA LI +M K
Sbjct: 436 SKFKEAESLIEIMSK 450
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 1/258 (0%)
Query: 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYN 186
I+ A +M K G ++ L++L+ GC L + ++ + + +G++PN YN
Sbjct: 297 IELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYN 356
Query: 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246
+++ FC G+ S+ + M PN +G L+ GF K + + M
Sbjct: 357 TLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTS 416
Query: 247 GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306
G V VY +++LC+ + +EA++L++ M P++ T+ I G G L+ A
Sbjct: 417 GCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWA 476
Query: 307 KKLFASMTNGG-CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT 365
+K+F M C P+ + L + E A + R +G ST +L+
Sbjct: 477 EKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLH 536
Query: 366 GLASISKVAEANELIGLM 383
G + A +L+G M
Sbjct: 537 GSCNAGLPGIALQLVGKM 554
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 4/256 (1%)
Query: 146 VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSIL 205
V NAL+ G +Y+ + E + GI PN +Y+ +I C SG +S L
Sbjct: 246 VSVYNALINGLCKEHDYKGAFELMREMVE-KGISPNVISYSTLINVLCNSGQIELAFSFL 304
Query: 206 AEMRRKSIRPNATDFGLLLAG-FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK 264
+M ++ PN L+ G F + ++ + QM+ G+ V YN +Q C
Sbjct: 305 TQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCS 364
Query: 265 LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYC 324
+A ++ M G PN+ TY LI+GF K G+L+GA ++ M GC P+
Sbjct: 365 HGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVV 424
Query: 325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384
+ LC+ +++ A + + P T + + GL ++ A ++ M+
Sbjct: 425 YTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQME 484
Query: 385 K--RFPKSGDMWNAAL 398
+ R P + +N L
Sbjct: 485 QQHRCPPNIVTYNELL 500
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 5/203 (2%)
Query: 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243
T+ +I+ G SV +L +M+ + + F +++ + + E ++ +
Sbjct: 78 TFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRI 137
Query: 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL 303
++ G V +YN + +L R + + M G +PN+ TY L+ K +
Sbjct: 138 KEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKV 197
Query: 304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363
+GAKKL M+N GC PD+ + +C+ G + +A+ + P S +L
Sbjct: 198 DGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEG-----RELAERFEPVVSVYNAL 252
Query: 364 VTGLASISKVAEANELIGLMKKR 386
+ GL A EL+ M ++
Sbjct: 253 INGLCKEHDYKGAFELMREMVEK 275
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 124 ANMIDHAMQTFEEMDK-YGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS 182
A +D A + F +M++ + ++ N LL G + EE + E + G+E +S
Sbjct: 470 AGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREI-FMRGVEWSS 528
Query: 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM 242
TYN ++ C +G ++ +M P+ +++ + K+ K E ++L +
Sbjct: 529 STYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQMLDL 588
Query: 243 MEKCG---IASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297
+ CG V Y I LC+ E+ LL+ M+S GI P++ T+ LI+ F
Sbjct: 589 V-SCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCF 645
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 157/374 (41%), Gaps = 60/374 (16%)
Query: 57 RILDICCGAS--------LAPESPLDRMAFSIAVSK-----LSQANHFNAISQLLEEL-K 102
R+L+ C A A + P R SI V K LS+ F A+ L+EE+ K
Sbjct: 118 RVLNRCGDAGNLGYRFFVWAAKQP--RYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRK 175
Query: 103 TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL---- 158
P L + E F V + + A+M+ A++ +EM K+G + + GC+L
Sbjct: 176 ENPQLIEPELFVV-LVQRFASADMVKKAIEVLDEMPKFGFEP-----DEYVFGCLLDALC 229
Query: 159 --------SKNYEEVK-------RIFTEFPKVY-------------------GIEPNSET 184
+K +E+++ R FT + G EP+
Sbjct: 230 KHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVD 289
Query: 185 YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244
Y ++ + +G + Y +L +MRR+ PNA + +L+ K + E+ KV ME
Sbjct: 290 YTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEME 349
Query: 245 KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304
+ + V Y + CK + ++ +LD M+ +G+ P+ TY H++ K+ + E
Sbjct: 350 RYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFE 409
Query: 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364
+L M PD + + C+ GE + A+++ G P T ++
Sbjct: 410 ECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMI 469
Query: 365 TGLASISKVAEANE 378
GLAS + EA++
Sbjct: 470 NGLASQGCLLEASD 483
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 1/197 (0%)
Query: 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180
Y A + A +M + G + + L+ EE ++F E + Y E
Sbjct: 297 YANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMER-YECEA 355
Query: 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240
+ TY ++ FC+ G Y +L +M +K + P+ + ++ K+ +E+ +++
Sbjct: 356 DVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELM 415
Query: 241 QMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE 300
+ M + + +YN+ I+ CKL +EA L + M G+ P +DT+ +I+G +
Sbjct: 416 EKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQ 475
Query: 301 GNLEGAKKLFASMTNGG 317
G L A F M G
Sbjct: 476 GCLLEASDHFKEMVTRG 492
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 128/269 (47%), Gaps = 8/269 (2%)
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
FEE+ + G++ A NALL G + + ++ + + +E K G+ P+ TY+ +I ++
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEK-RGVSPDEHTYSLLIDAYV 385
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+G S +L EM ++PN+ F LLAGF +++ +VL+ M+ G+
Sbjct: 386 NAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQ 445
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
YN+ I + K + A D MLS GI+P+ T+ LI K G A+++F +M
Sbjct: 446 FYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAM 505
Query: 314 TNGGCEPDSYCFFMFTYFLCQGGEYE--TALKVCRASM-AKGWVPHFSTMKSLVTGLASI 370
GC P C + + G+ E +K M ++G +P+ T +LV
Sbjct: 506 ERRGCLP---CATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 371 SKVAEANELIGLMKKR-FPKSGDMWNAAL 398
+ +A E + MK S M+NA +
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALI 591
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 119/274 (43%), Gaps = 3/274 (1%)
Query: 114 HVHSIVL--YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTE 171
H +S+++ Y A + A +EM+ ++ + + LL G +++ ++ E
Sbjct: 375 HTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKE 434
Query: 172 FPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH 231
K G++P+ + YN VI +F + + M + I P+ + L+ K
Sbjct: 435 M-KSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHG 493
Query: 232 KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK 291
++ ++ + ME+ G YNI I S +R ++ K LL M S+GI PN+ T+
Sbjct: 494 RHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHT 553
Query: 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351
L+ +GK G A + M + G +P S + Q G E A+ R +
Sbjct: 554 TLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSD 613
Query: 352 GWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385
G P + SL+ + AEA ++ MK+
Sbjct: 614 GLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKE 647
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 8/252 (3%)
Query: 77 AFSIAVSKLSQANHFNAISQLLEELKT---RPDLRQNERFHVHSIVLYGQANMIDHAMQT 133
FS ++ + Q+L+E+K+ +PD +F+ I +G+ N +DHAM T
Sbjct: 411 VFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPD----RQFYNVVIDTFGKFNCLDHAMTT 466
Query: 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193
F+ M G+ N L+ C V E + G P + TYN +I S+
Sbjct: 467 FDRMLSEGIEPDRVTWNTLI-DCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYG 525
Query: 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVN 253
+ + +L +M+ + I PN L+ + K ++ D + L+ M+ G+
Sbjct: 526 DQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSST 585
Query: 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313
+YN I + + SE+A M S G+KP+L LI+ FG++ A + M
Sbjct: 586 MYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYM 645
Query: 314 TNGGCEPDSYCF 325
G +PD +
Sbjct: 646 KENGVKPDVVTY 657
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/324 (21%), Positives = 136/324 (41%), Gaps = 41/324 (12%)
Query: 102 KTRPDLRQNERFHVHSIVLYG--QANMIDHAM--QTFEEMDKYGLRQSVDALNALLLGCI 157
K R D Q++ F +S+V+ ++N ID M + ++E+++ L V +N +++G
Sbjct: 222 KMRQDGYQSD-FVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFA 280
Query: 158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA 217
S + + ++ + G+ + T +I + +SG + ++ E+R+ I+P
Sbjct: 281 KSGDPSKALQLLG-MAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRT 339
Query: 218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG 277
+ LL G+ K +D ++ MEK G++ + Y++ I + R E A+ +L
Sbjct: 340 RAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKE 399
Query: 278 M-----------LSR------------------------GIKPNLDTYKHLIHGFGKEGN 302
M SR G+KP+ Y +I FGK
Sbjct: 400 MEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNC 459
Query: 303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS 362
L+ A F M + G EPD + C+ G + A ++ A +G +P +T
Sbjct: 460 LDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNI 519
Query: 363 LVTGLASISKVAEANELIGLMKKR 386
++ + + L+G MK +
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQ 543
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,641,713
Number of Sequences: 539616
Number of extensions: 5310199
Number of successful extensions: 19012
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 14604
Number of HSP's gapped (non-prelim): 2266
length of query: 401
length of database: 191,569,459
effective HSP length: 120
effective length of query: 281
effective length of database: 126,815,539
effective search space: 35635166459
effective search space used: 35635166459
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)