Query 015765
Match_columns 401
No_of_seqs 567 out of 2454
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 18:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.4E-33 4.8E-38 258.2 24.2 211 131-368 10-221 (501)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-31 8.7E-36 252.2 39.7 349 41-396 152-589 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.3E-33 7.7E-38 256.8 24.1 206 93-299 8-222 (501)
4 2xpi_A Anaphase-promoting comp 100.0 4.7E-31 1.6E-35 250.4 37.8 352 37-397 82-556 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6.6E-27 2.2E-31 210.0 38.2 343 42-396 36-378 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 3.1E-26 1E-30 205.6 37.1 338 47-397 7-345 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.7E-24 9.1E-29 196.8 35.3 314 71-396 22-368 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 188.8 37.1 337 39-388 26-412 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.5E-22 8.5E-27 186.8 32.0 242 147-395 238-487 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 2.7E-21 9.1E-26 171.1 36.9 312 74-397 2-346 (359)
11 3fp2_A TPR repeat-containing p 99.9 1.7E-20 5.8E-25 175.4 34.2 345 38-393 24-498 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.4E-24 159.7 36.3 316 41-368 5-351 (359)
13 3hym_B Cell division cycle pro 99.9 2.6E-20 8.9E-25 162.8 29.5 295 71-374 18-322 (330)
14 2gw1_A Mitochondrial precursor 99.9 2E-20 7E-25 173.8 30.5 347 40-396 7-454 (514)
15 3hym_B Cell division cycle pro 99.9 1.2E-19 4.1E-24 158.6 31.6 278 111-395 22-308 (330)
16 1fch_A Peroxisomal targeting s 99.9 5.7E-20 2E-24 163.3 25.3 295 85-385 35-358 (368)
17 3fp2_A TPR repeat-containing p 99.9 7.7E-19 2.6E-23 164.2 32.5 305 74-387 24-408 (537)
18 1fch_A Peroxisomal targeting s 99.9 3.2E-19 1.1E-23 158.5 25.4 290 51-347 37-355 (368)
19 3cv0_A Peroxisome targeting si 99.8 3.3E-19 1.1E-23 155.6 22.9 282 74-386 20-315 (327)
20 4eqf_A PEX5-related protein; a 99.8 8.1E-19 2.8E-23 155.8 24.4 267 111-383 65-353 (365)
21 3mkr_A Coatomer subunit epsilo 99.8 2.2E-18 7.4E-23 147.6 25.9 252 83-351 7-264 (291)
22 4eqf_A PEX5-related protein; a 99.8 1.4E-18 4.7E-23 154.4 22.8 266 74-347 64-352 (365)
23 3cv0_A Peroxisome targeting si 99.8 2.9E-18 9.9E-23 149.6 23.6 279 38-347 20-311 (327)
24 3spa_A Mtrpol, DNA-directed RN 99.8 7.5E-20 2.6E-24 172.9 10.8 114 218-331 128-245 (1134)
25 3spa_A Mtrpol, DNA-directed RN 99.8 3.7E-20 1.3E-24 174.9 7.2 120 251-370 126-249 (1134)
26 2xm6_A Protein corresponding t 99.8 5.1E-15 1.7E-19 136.7 41.4 309 52-387 56-433 (490)
27 3mkr_A Coatomer subunit epsilo 99.8 9.3E-17 3.2E-21 137.4 27.1 253 122-391 10-269 (291)
28 1b89_A Protein (clathrin heavy 99.8 3.1E-18 1.1E-22 150.2 16.8 287 47-379 11-304 (449)
29 2xm6_A Protein corresponding t 99.8 2.3E-14 8E-19 132.2 42.6 287 74-386 38-360 (490)
30 3uq3_A Heat shock protein STI1 99.8 2.8E-16 9.6E-21 132.0 23.0 227 113-387 7-237 (258)
31 4g1t_A Interferon-induced prot 99.8 1.2E-15 4.1E-20 140.2 28.7 347 40-392 52-465 (472)
32 2ooe_A Cleavage stimulation fa 99.7 2.4E-14 8.2E-19 133.5 36.8 340 41-391 15-459 (530)
33 1b89_A Protein (clathrin heavy 99.7 1.1E-17 3.9E-22 146.6 10.7 253 86-383 14-266 (449)
34 3uq3_A Heat shock protein STI1 99.7 2.1E-15 7.1E-20 126.6 23.1 226 74-315 4-235 (258)
35 2ooe_A Cleavage stimulation fa 99.7 2.6E-13 8.7E-18 126.6 39.1 342 39-389 46-495 (530)
36 2ho1_A Type 4 fimbrial biogene 99.7 5.9E-15 2E-19 123.6 25.5 211 182-396 37-248 (252)
37 2pl2_A Hypothetical conserved 99.7 1.7E-15 5.9E-20 123.8 21.4 200 179-384 2-212 (217)
38 3u4t_A TPR repeat-containing p 99.7 2.3E-15 7.7E-20 127.6 22.8 242 150-396 7-260 (272)
39 1ouv_A Conserved hypothetical 99.7 5.7E-14 1.9E-18 119.2 30.2 225 112-390 7-255 (273)
40 2pl2_A Hypothetical conserved 99.7 3.9E-15 1.3E-19 121.7 21.9 193 113-312 7-210 (217)
41 2vq2_A PILW, putative fimbrial 99.7 1.4E-14 4.8E-19 118.8 24.6 211 182-395 8-220 (225)
42 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.8E-15 6E-20 128.5 18.9 221 88-315 18-243 (275)
43 4g1t_A Interferon-induced prot 99.7 3.7E-13 1.3E-17 123.5 35.1 309 74-389 50-404 (472)
44 2q7f_A YRRB protein; TPR, prot 99.7 3E-15 1E-19 124.6 19.1 209 183-396 24-232 (243)
45 3u4t_A TPR repeat-containing p 99.7 9.5E-15 3.2E-19 123.8 22.1 231 117-352 9-251 (272)
46 2vq2_A PILW, putative fimbrial 99.7 6.2E-14 2.1E-18 114.9 26.2 199 112-314 9-209 (225)
47 1xi4_A Clathrin heavy chain; a 99.7 3.1E-13 1.1E-17 132.4 34.6 307 41-395 987-1318(1630)
48 2ho1_A Type 4 fimbrial biogene 99.7 4.8E-14 1.6E-18 118.0 25.6 201 75-281 37-238 (252)
49 1ouv_A Conserved hypothetical 99.7 3E-13 1E-17 114.7 30.7 224 74-317 5-252 (273)
50 2h6f_A Protein farnesyltransfe 99.7 6.7E-14 2.3E-18 123.8 26.9 248 111-367 97-363 (382)
51 1xnf_A Lipoprotein NLPI; TPR, 99.7 8.1E-15 2.8E-19 124.4 20.3 247 123-380 17-269 (275)
52 2h6f_A Protein farnesyltransfe 99.7 2E-14 6.7E-19 127.2 22.1 245 145-397 96-359 (382)
53 2q7f_A YRRB protein; TPR, prot 99.6 2.4E-14 8.1E-19 119.1 20.2 201 74-281 22-222 (243)
54 3sf4_A G-protein-signaling mod 99.6 7.5E-15 2.5E-19 131.9 17.5 301 73-373 7-363 (406)
55 4a1s_A PINS, partner of inscut 99.6 1.7E-14 5.8E-19 130.0 19.2 172 74-245 47-251 (411)
56 2ond_A Cleavage stimulation fa 99.6 2.1E-12 7.2E-17 111.5 30.0 217 128-351 33-270 (308)
57 3vtx_A MAMA; tetratricopeptide 99.6 1.2E-13 4.2E-18 109.6 20.1 180 216-399 4-183 (184)
58 4a1s_A PINS, partner of inscut 99.6 4.8E-14 1.6E-18 127.0 18.9 92 47-138 56-153 (411)
59 3ro2_A PINS homolog, G-protein 99.6 4.3E-14 1.5E-18 123.3 17.8 280 77-387 7-333 (338)
60 3ro2_A PINS homolog, G-protein 99.6 5.3E-14 1.8E-18 122.7 18.2 238 117-386 11-292 (338)
61 3sf4_A G-protein-signaling mod 99.6 1.1E-13 3.8E-18 124.2 20.7 275 111-386 9-336 (406)
62 3ulq_A Response regulator aspa 99.6 4.5E-13 1.5E-17 119.5 23.3 298 85-386 22-368 (383)
63 1xi4_A Clathrin heavy chain; a 99.6 1.1E-11 3.7E-16 121.8 33.8 289 45-377 1055-1375(1630)
64 3nf1_A KLC 1, kinesin light ch 99.5 7.6E-14 2.6E-18 120.5 14.1 140 70-209 22-180 (311)
65 2ond_A Cleavage stimulation fa 99.5 1.5E-11 5.1E-16 106.1 27.9 217 92-316 33-270 (308)
66 3vtx_A MAMA; tetratricopeptide 99.5 4E-12 1.4E-16 100.8 22.1 166 111-281 5-170 (184)
67 3q15_A PSP28, response regulat 99.5 6.9E-12 2.4E-16 111.6 25.2 311 72-386 7-365 (378)
68 3ulq_A Response regulator aspa 99.5 2E-12 6.7E-17 115.4 20.7 300 49-351 22-368 (383)
69 1hz4_A MALT regulatory protein 99.5 2.4E-11 8.2E-16 107.9 27.4 305 77-389 16-352 (373)
70 4abn_A Tetratricopeptide repea 99.5 1.4E-12 4.7E-17 119.5 19.7 214 126-346 83-316 (474)
71 3e4b_A ALGK; tetratricopeptide 99.5 1.4E-12 4.7E-17 118.8 19.4 311 47-390 11-391 (452)
72 4abn_A Tetratricopeptide repea 99.5 1.2E-12 4E-17 120.0 18.2 214 91-312 84-317 (474)
73 3nf1_A KLC 1, kinesin light ch 99.5 1E-12 3.6E-17 113.3 16.6 244 144-388 25-309 (311)
74 3e4b_A ALGK; tetratricopeptide 99.5 2.1E-11 7.2E-16 111.0 25.5 251 114-386 144-421 (452)
75 3as5_A MAMA; tetratricopeptide 99.5 6.3E-12 2.2E-16 99.4 18.2 169 219-391 10-178 (186)
76 3q15_A PSP28, response regulat 99.4 5E-11 1.7E-15 106.1 24.0 298 50-350 23-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.4 3E-11 1E-15 95.4 19.9 26 288-313 145-170 (186)
78 1hz4_A MALT regulatory protein 99.4 2.5E-10 8.5E-15 101.3 26.7 297 47-351 22-349 (373)
79 4i17_A Hypothetical protein; T 99.4 3.1E-11 1.1E-15 99.2 19.0 206 179-396 4-219 (228)
80 4gyw_A UDP-N-acetylglucosamine 99.4 4.1E-11 1.4E-15 114.3 20.4 164 74-243 8-171 (723)
81 3edt_B KLC 2, kinesin light ch 99.4 1.2E-11 4E-16 105.0 14.8 139 72-210 40-197 (283)
82 4e6h_A MRNA 3'-END-processing 99.4 7.2E-09 2.5E-13 97.9 34.2 204 185-391 346-575 (679)
83 4gyw_A UDP-N-acetylglucosamine 99.3 6.4E-11 2.2E-15 113.0 20.2 168 108-280 6-173 (723)
84 4i17_A Hypothetical protein; T 99.3 3.2E-10 1.1E-14 93.1 21.0 207 143-363 4-220 (228)
85 3edt_B KLC 2, kinesin light ch 99.3 3.3E-11 1.1E-15 102.2 14.7 158 87-244 13-196 (283)
86 3mv2_B Coatomer subunit epsilo 99.3 5E-10 1.7E-14 94.3 21.2 245 82-352 20-283 (310)
87 4e6h_A MRNA 3'-END-processing 99.3 2.5E-09 8.6E-14 101.0 28.3 320 73-396 64-509 (679)
88 2fo7_A Synthetic consensus TPR 99.2 7E-10 2.4E-14 82.4 17.0 132 254-388 3-134 (136)
89 3mv2_B Coatomer subunit epsilo 99.2 3.8E-08 1.3E-12 82.9 26.8 184 201-391 85-287 (310)
90 1qqe_A Vesicular transport pro 99.2 5.5E-10 1.9E-14 95.5 15.4 209 161-387 32-270 (292)
91 1qqe_A Vesicular transport pro 99.2 2.6E-09 8.8E-14 91.3 19.4 193 121-315 47-268 (292)
92 3qky_A Outer membrane assembly 99.2 1.6E-09 5.6E-14 90.9 17.6 193 179-391 12-229 (261)
93 2fo7_A Synthetic consensus TPR 99.2 3.5E-09 1.2E-13 78.5 17.2 126 115-244 5-130 (136)
94 3qky_A Outer membrane assembly 99.2 3.1E-09 1.1E-13 89.1 18.8 102 74-175 14-126 (261)
95 2vsy_A XCC0866; transferase, g 99.1 3.1E-09 1E-13 99.9 17.9 154 195-352 2-158 (568)
96 3urz_A Uncharacterized protein 99.1 7.4E-09 2.5E-13 83.6 17.1 19 121-139 14-32 (208)
97 3rjv_A Putative SEL1 repeat pr 99.1 3E-08 1E-12 80.2 20.5 128 181-315 17-157 (212)
98 2pzi_A Probable serine/threoni 99.1 2.5E-09 8.5E-14 102.4 16.1 170 122-299 402-580 (681)
99 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.7E-08 6E-13 82.5 18.9 184 75-282 4-214 (225)
100 3urz_A Uncharacterized protein 99.1 1E-08 3.4E-13 82.8 17.1 163 77-246 6-186 (208)
101 2r5s_A Uncharacterized protein 99.1 8.5E-09 2.9E-13 80.8 16.0 161 114-279 9-171 (176)
102 3qou_A Protein YBBN; thioredox 99.1 3.6E-08 1.2E-12 83.8 21.1 167 108-279 114-282 (287)
103 2yhc_A BAMD, UPF0169 lipoprote 99.1 3.4E-08 1.2E-12 80.8 20.2 191 182-393 4-220 (225)
104 2pzi_A Probable serine/threoni 99.1 3.2E-09 1.1E-13 101.6 15.9 156 86-246 402-563 (681)
105 3rjv_A Putative SEL1 repeat pr 99.1 3.3E-08 1.1E-12 80.0 19.6 174 201-386 5-197 (212)
106 3dra_A Protein farnesyltransfe 99.1 2.7E-07 9.1E-12 78.4 25.7 225 47-280 41-286 (306)
107 3dra_A Protein farnesyltransfe 99.0 6.6E-07 2.2E-11 76.0 27.2 115 92-211 50-175 (306)
108 2r5s_A Uncharacterized protein 99.0 1.2E-08 4.2E-13 79.9 15.0 161 149-314 9-171 (176)
109 4ga2_A E3 SUMO-protein ligase 99.0 4.4E-09 1.5E-13 80.0 11.5 141 85-231 7-148 (150)
110 2vsy_A XCC0866; transferase, g 99.0 2.5E-08 8.7E-13 93.6 18.2 152 53-211 3-157 (568)
111 2ifu_A Gamma-SNAP; membrane fu 99.0 6.7E-08 2.3E-12 83.1 19.4 225 88-343 4-253 (307)
112 4ga2_A E3 SUMO-protein ligase 99.0 3.2E-09 1.1E-13 80.8 9.6 109 123-235 9-117 (150)
113 3qou_A Protein YBBN; thioredox 99.0 4.3E-08 1.5E-12 83.4 17.3 167 143-314 114-282 (287)
114 2uy1_A Cleavage stimulation fa 98.9 7.6E-06 2.6E-10 74.9 32.3 325 38-386 14-413 (493)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 3.3E-08 1.1E-12 85.0 15.2 131 77-209 38-182 (307)
116 4gco_A Protein STI-1; structur 98.9 3.5E-08 1.2E-12 72.4 12.9 107 288-396 14-120 (126)
117 3u3w_A Transcriptional activat 98.9 3.9E-07 1.3E-11 77.7 20.7 95 255-349 158-264 (293)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.6E-07 1.6E-11 73.1 19.1 125 151-281 11-150 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.8E-07 1.3E-11 73.5 18.6 123 118-246 13-150 (213)
120 3u3w_A Transcriptional activat 98.8 1.8E-06 6E-11 73.6 23.4 162 225-386 83-266 (293)
121 2qfc_A PLCR protein; TPR, HTH, 98.8 3.7E-07 1.3E-11 77.8 18.3 164 116-279 80-264 (293)
122 3gyz_A Chaperone protein IPGC; 98.8 1.9E-07 6.6E-12 70.7 13.2 99 74-175 35-133 (151)
123 3q7a_A Farnesyltransferase alp 98.8 3.3E-06 1.1E-10 72.6 22.0 171 121-297 64-252 (349)
124 1a17_A Serine/threonine protei 98.8 4.1E-07 1.4E-11 70.0 15.2 131 253-386 14-146 (166)
125 1a17_A Serine/threonine protei 98.8 5.2E-07 1.8E-11 69.4 15.8 92 116-210 18-109 (166)
126 3q7a_A Farnesyltransferase alp 98.7 1.3E-05 4.4E-10 68.9 25.4 184 78-268 57-258 (349)
127 2lni_A Stress-induced-phosphop 98.7 5.6E-07 1.9E-11 66.2 14.8 121 71-196 12-132 (133)
128 1na0_A Designed protein CTPR3; 98.7 2.4E-07 8.2E-12 67.3 12.5 112 253-367 10-121 (125)
129 2e2e_A Formate-dependent nitri 98.7 1E-07 3.6E-12 74.5 11.1 123 227-352 20-145 (177)
130 2qfc_A PLCR protein; TPR, HTH, 98.7 2.2E-06 7.4E-11 73.0 20.1 166 148-313 77-263 (293)
131 4gco_A Protein STI-1; structur 98.7 4E-07 1.4E-11 66.7 13.4 89 118-209 20-108 (126)
132 1na0_A Designed protein CTPR3; 98.7 7.3E-07 2.5E-11 64.6 14.9 58 114-172 46-103 (125)
133 2vgx_A Chaperone SYCD; alterna 98.7 7E-08 2.4E-12 73.1 9.4 99 251-351 20-118 (148)
134 3gyz_A Chaperone protein IPGC; 98.7 1.9E-07 6.3E-12 70.8 11.7 97 253-351 37-133 (151)
135 4f3v_A ESX-1 secretion system 98.7 5E-07 1.7E-11 75.1 15.1 137 257-397 107-247 (282)
136 2lni_A Stress-induced-phosphop 98.7 6.2E-07 2.1E-11 66.0 14.4 118 108-229 13-130 (133)
137 2c2l_A CHIP, carboxy terminus 98.7 1.6E-07 5.4E-12 79.6 12.4 95 184-280 6-100 (281)
138 3gw4_A Uncharacterized protein 98.7 1.9E-07 6.4E-12 74.7 12.2 156 193-349 3-174 (203)
139 2c2l_A CHIP, carboxy terminus 98.7 1.2E-07 4.2E-12 80.2 11.3 97 75-174 4-100 (281)
140 4f3v_A ESX-1 secretion system 98.7 1.6E-06 5.6E-11 72.0 17.4 188 51-246 18-237 (282)
141 2vyi_A SGTA protein; chaperone 98.7 9.1E-07 3.1E-11 64.7 14.5 95 76-173 13-107 (131)
142 2vyi_A SGTA protein; chaperone 98.7 7.7E-07 2.6E-11 65.1 13.9 120 110-233 11-130 (131)
143 3gw4_A Uncharacterized protein 98.7 5.1E-07 1.7E-11 72.1 13.5 133 112-244 27-174 (203)
144 1elw_A TPR1-domain of HOP; HOP 98.7 5.3E-07 1.8E-11 64.7 12.3 105 288-394 5-109 (118)
145 2e2e_A Formate-dependent nitri 98.6 5.4E-07 1.8E-11 70.4 13.0 120 86-210 21-143 (177)
146 3upv_A Heat shock protein STI1 98.6 3.4E-07 1.2E-11 67.0 11.1 96 290-387 7-102 (126)
147 2kck_A TPR repeat; tetratricop 98.6 7E-07 2.4E-11 63.4 11.9 103 287-391 6-111 (112)
148 3sz7_A HSC70 cochaperone (SGT) 98.6 5.6E-07 1.9E-11 69.3 12.0 100 251-352 10-109 (164)
149 2uy1_A Cleavage stimulation fa 98.6 1.8E-05 6.2E-10 72.4 23.8 306 71-395 11-358 (493)
150 2xcb_A PCRH, regulatory protei 98.6 5.2E-07 1.8E-11 67.7 11.4 97 253-351 19-115 (142)
151 1p5q_A FKBP52, FK506-binding p 98.6 9.5E-07 3.2E-11 76.8 14.6 124 216-341 146-283 (336)
152 2vgx_A Chaperone SYCD; alterna 98.6 1E-06 3.5E-11 66.5 12.4 99 74-175 20-118 (148)
153 2dba_A Smooth muscle cell asso 98.5 2.1E-06 7.2E-11 64.4 13.5 104 287-393 28-135 (148)
154 1p5q_A FKBP52, FK506-binding p 98.5 2.8E-06 9.5E-11 73.9 15.6 123 111-236 147-283 (336)
155 3q49_B STIP1 homology and U bo 98.5 1.1E-06 3.8E-11 65.2 11.4 99 251-351 8-106 (137)
156 4b4t_Q 26S proteasome regulato 98.5 3.7E-05 1.3E-09 69.2 23.6 198 82-279 11-243 (434)
157 2fbn_A 70 kDa peptidylprolyl i 98.5 3.9E-07 1.3E-11 72.7 8.9 120 184-305 40-174 (198)
158 3upv_A Heat shock protein STI1 98.5 4.3E-06 1.5E-10 61.0 13.9 93 114-209 7-99 (126)
159 2fbn_A 70 kDa peptidylprolyl i 98.5 7.2E-07 2.5E-11 71.1 10.4 154 50-208 15-183 (198)
160 1elw_A TPR1-domain of HOP; HOP 98.5 8.6E-06 2.9E-10 58.1 15.3 94 114-210 7-100 (118)
161 3sz7_A HSC70 cochaperone (SGT) 98.5 3.9E-06 1.3E-10 64.5 14.2 102 72-176 8-109 (164)
162 4b4t_Q 26S proteasome regulato 98.5 7.8E-06 2.7E-10 73.7 17.8 198 118-315 11-244 (434)
163 2kck_A TPR repeat; tetratricop 98.5 2.4E-06 8.1E-11 60.6 11.6 95 113-210 8-105 (112)
164 1hxi_A PEX5, peroxisome target 98.5 1.5E-06 5.1E-11 63.1 10.4 99 290-390 20-118 (121)
165 2xcb_A PCRH, regulatory protei 98.5 2.7E-06 9.3E-11 63.7 12.1 59 113-172 54-112 (142)
166 2xev_A YBGF; tetratricopeptide 98.4 3.3E-06 1.1E-10 61.8 11.7 91 258-351 8-105 (129)
167 4gcn_A Protein STI-1; structur 98.4 4.9E-06 1.7E-10 60.9 12.3 96 114-210 11-111 (127)
168 1elr_A TPR2A-domain of HOP; HO 98.4 3.7E-06 1.3E-10 61.4 11.3 97 113-210 6-107 (131)
169 3q49_B STIP1 homology and U bo 98.4 9.5E-06 3.2E-10 60.0 13.6 92 114-208 12-103 (137)
170 2dba_A Smooth muscle cell asso 98.4 1.7E-05 5.9E-10 59.3 14.9 110 252-365 28-141 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.4 4E-06 1.4E-10 61.3 11.0 113 74-191 3-121 (131)
172 4gcn_A Protein STI-1; structur 98.4 7.8E-06 2.7E-10 59.8 12.3 55 223-278 14-68 (127)
173 3dss_A Geranylgeranyl transfer 98.3 0.00065 2.2E-08 58.1 25.2 95 127-225 90-187 (331)
174 2xev_A YBGF; tetratricopeptide 98.3 3.2E-05 1.1E-09 56.4 14.8 95 80-175 7-105 (129)
175 3dss_A Geranylgeranyl transfer 98.3 0.0002 6.8E-09 61.2 21.5 139 122-265 40-192 (331)
176 3k9i_A BH0479 protein; putativ 98.3 1E-06 3.5E-11 63.5 6.1 86 265-351 3-90 (117)
177 3ro3_A PINS homolog, G-protein 98.3 9.5E-06 3.3E-10 61.6 11.9 133 76-208 10-155 (164)
178 1hxi_A PEX5, peroxisome target 98.3 8.3E-06 2.9E-10 59.0 10.9 93 78-173 20-112 (121)
179 3ro3_A PINS homolog, G-protein 98.3 3.7E-06 1.3E-10 64.0 9.1 132 255-386 12-158 (164)
180 3k9i_A BH0479 protein; putativ 98.3 3.4E-06 1.2E-10 60.7 7.9 87 88-175 3-90 (117)
181 3rkv_A Putative peptidylprolyl 98.3 5.9E-06 2E-10 63.3 9.7 99 252-351 11-126 (162)
182 1wao_1 Serine/threonine protei 98.2 3.8E-06 1.3E-10 76.7 7.9 119 225-346 14-134 (477)
183 1dce_A Protein (RAB geranylger 98.1 0.00016 5.5E-09 67.3 18.1 160 233-396 45-231 (567)
184 1wao_1 Serine/threonine protei 98.1 1E-05 3.5E-10 73.9 9.8 121 81-206 12-134 (477)
185 2if4_A ATFKBP42; FKBP-like, al 98.1 8.6E-06 3E-10 70.8 9.0 153 217-390 179-332 (338)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4E-05 1.4E-09 69.6 13.5 124 217-342 268-405 (457)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.4E-05 1.8E-09 68.7 14.0 86 184-271 319-404 (457)
188 1ihg_A Cyclophilin 40; ppiase 98.1 4.2E-05 1.4E-09 67.3 12.6 122 255-378 226-362 (370)
189 3rkv_A Putative peptidylprolyl 98.1 6.5E-05 2.2E-09 57.4 12.2 61 148-210 65-125 (162)
190 2hr2_A Hypothetical protein; a 98.1 2.7E-05 9.4E-10 58.4 9.5 100 292-393 16-138 (159)
191 1ihg_A Cyclophilin 40; ppiase 98.0 4.8E-05 1.7E-09 66.9 12.3 137 113-272 225-361 (370)
192 3n71_A Histone lysine methyltr 98.0 4.3E-05 1.5E-09 69.5 11.7 62 76-137 352-419 (490)
193 3n71_A Histone lysine methyltr 98.0 4.8E-05 1.6E-09 69.2 10.9 88 85-172 319-419 (490)
194 2if4_A ATFKBP42; FKBP-like, al 98.0 3.9E-05 1.3E-09 66.7 10.0 126 252-397 179-304 (338)
195 1dce_A Protein (RAB geranylger 97.9 0.00078 2.7E-08 62.7 18.7 173 91-270 45-244 (567)
196 2l6j_A TPR repeat-containing p 97.9 8.4E-06 2.9E-10 57.7 4.2 90 286-378 3-99 (111)
197 1klx_A Cysteine rich protein B 97.9 0.00059 2E-08 50.4 14.3 87 260-352 33-127 (138)
198 1klx_A Cysteine rich protein B 97.9 0.0006 2.1E-08 50.4 14.0 109 126-246 10-126 (138)
199 2hr2_A Hypothetical protein; a 97.9 0.00028 9.7E-09 52.9 11.7 93 116-208 16-128 (159)
200 2kat_A Uncharacterized protein 97.8 0.00013 4.6E-09 51.9 9.3 79 93-174 3-81 (115)
201 2l6j_A TPR repeat-containing p 97.8 3.3E-05 1.1E-09 54.5 5.2 60 113-173 6-65 (111)
202 1na3_A Designed protein CTPR2; 97.8 0.0004 1.4E-08 46.6 10.6 59 114-173 12-70 (91)
203 2kat_A Uncharacterized protein 97.8 0.00025 8.4E-09 50.4 9.9 80 270-351 3-82 (115)
204 3ma5_A Tetratricopeptide repea 97.7 0.00014 4.6E-09 50.4 8.0 62 111-173 7-68 (100)
205 1na3_A Designed protein CTPR2; 97.7 0.00022 7.5E-09 48.0 8.3 80 287-368 9-88 (91)
206 1zu2_A Mitochondrial import re 97.7 5.2E-05 1.8E-09 56.8 4.9 86 264-351 14-120 (158)
207 1zu2_A Mitochondrial import re 97.5 0.00041 1.4E-08 51.9 7.4 97 123-224 14-131 (158)
208 3ma5_A Tetratricopeptide repea 97.4 0.0009 3.1E-08 46.1 8.7 65 286-351 6-70 (100)
209 2kc7_A BFR218_protein; tetratr 97.2 0.0014 4.6E-08 44.9 7.4 86 293-388 6-92 (99)
210 3qww_A SET and MYND domain-con 97.1 0.0015 5.2E-08 58.3 8.7 64 147-210 341-410 (433)
211 3qww_A SET and MYND domain-con 97.1 0.0024 8.2E-08 57.1 9.8 86 88-173 311-409 (433)
212 2kc7_A BFR218_protein; tetratr 97.1 0.00065 2.2E-08 46.6 5.0 58 258-316 6-64 (99)
213 1pc2_A Mitochondria fission pr 97.1 0.0032 1.1E-07 46.6 8.7 84 305-390 16-104 (152)
214 3qwp_A SET and MYND domain-con 97.1 0.0035 1.2E-07 56.0 10.4 93 118-210 294-399 (429)
215 3bee_A Putative YFRE protein; 97.0 0.0046 1.6E-07 41.8 8.5 51 338-389 25-75 (93)
216 1wy6_A Hypothetical protein ST 97.0 0.048 1.6E-06 39.0 15.4 139 194-354 19-157 (172)
217 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0046 1.6E-07 42.9 8.5 66 286-351 4-75 (104)
218 3mkq_A Coatomer beta'-subunit; 97.0 0.019 6.5E-07 56.0 15.9 27 252-278 681-707 (814)
219 3ly7_A Transcriptional activat 96.9 0.015 5E-07 50.1 12.6 169 41-223 166-349 (372)
220 3qwp_A SET and MYND domain-con 96.9 0.0042 1.4E-07 55.5 9.5 93 82-174 294-399 (429)
221 3mkq_A Coatomer beta'-subunit; 96.9 0.019 6.4E-07 56.1 14.7 128 191-351 608-736 (814)
222 3ly7_A Transcriptional activat 96.9 0.034 1.2E-06 47.9 14.1 72 215-290 275-346 (372)
223 1wy6_A Hypothetical protein ST 96.6 0.11 3.8E-06 37.1 14.9 149 113-284 7-157 (172)
224 3bee_A Putative YFRE protein; 96.5 0.051 1.7E-06 36.6 10.5 47 127-174 25-71 (93)
225 3mkq_B Coatomer subunit alpha; 96.4 0.11 3.9E-06 39.4 13.0 130 225-384 13-142 (177)
226 3mkq_B Coatomer subunit alpha; 96.3 0.22 7.7E-06 37.7 15.7 100 192-312 15-114 (177)
227 2v5f_A Prolyl 4-hydroxylase su 96.3 0.037 1.3E-06 38.2 9.3 67 74-140 4-75 (104)
228 1pc2_A Mitochondria fission pr 96.3 0.066 2.3E-06 39.6 10.7 82 127-211 14-100 (152)
229 1nzn_A CGI-135 protein, fissio 96.2 0.03 1E-06 39.8 8.0 88 303-391 17-108 (126)
230 3u64_A Protein TP_0956; tetrat 96.1 0.48 1.6E-05 39.2 18.4 130 158-292 133-282 (301)
231 4b4t_P 26S proteasome regulato 96.0 0.51 1.8E-05 42.3 17.3 189 89-279 30-245 (445)
232 1v54_E Cytochrome C oxidase po 95.9 0.05 1.7E-06 36.4 7.6 49 339-387 27-75 (109)
233 3u64_A Protein TP_0956; tetrat 95.8 0.68 2.3E-05 38.3 18.2 95 162-259 179-284 (301)
234 4h7y_A Dual specificity protei 95.5 0.24 8.1E-06 36.3 10.3 63 301-365 74-136 (161)
235 4h7y_A Dual specificity protei 95.4 0.25 8.6E-06 36.1 10.1 64 266-331 74-137 (161)
236 4ady_A RPN2, 26S proteasome re 95.1 2.8 9.5E-05 41.1 24.1 20 226-245 569-588 (963)
237 2y69_E Cytochrome C oxidase su 95.0 0.13 4.6E-06 36.5 7.6 57 340-396 71-127 (152)
238 4gns_B Protein CSD3, chitin bi 94.9 0.52 1.8E-05 45.0 13.9 128 256-384 252-398 (754)
239 1y8m_A FIS1; mitochondria, unk 94.8 0.69 2.4E-05 33.5 11.1 72 319-390 36-110 (144)
240 3o48_A Mitochondria fission 1 94.6 0.32 1.1E-05 34.8 8.7 73 319-391 37-112 (134)
241 2ff4_A Probable regulatory pro 94.5 0.77 2.6E-05 40.3 13.3 131 71-221 108-249 (388)
242 4ady_A RPN2, 26S proteasome re 94.3 4.3 0.00015 39.8 19.9 153 192-350 500-657 (963)
243 1nzn_A CGI-135 protein, fissio 94.3 0.32 1.1E-05 34.5 8.2 85 124-211 14-103 (126)
244 1qsa_A Protein (soluble lytic 93.6 4.8 0.00016 37.6 31.5 324 38-385 6-347 (618)
245 4fhn_B Nucleoporin NUP120; pro 93.5 2.1 7.1E-05 43.6 15.9 146 80-234 817-988 (1139)
246 4b4t_P 26S proteasome regulato 93.4 4.2 0.00014 36.3 21.6 258 53-312 30-320 (445)
247 4gns_B Protein CSD3, chitin bi 93.0 0.84 2.9E-05 43.6 11.3 129 112-243 249-397 (754)
248 3lvg_A Clathrin heavy chain 1; 92.8 1 3.5E-05 40.3 10.6 122 74-203 198-325 (624)
249 2wpv_A GET4, UPF0363 protein Y 92.8 3.9 0.00013 34.4 18.7 18 297-314 198-215 (312)
250 2ff4_A Probable regulatory pro 92.7 1.9 6.6E-05 37.7 12.6 66 294-360 178-248 (388)
251 4fhn_B Nucleoporin NUP120; pro 92.7 3.7 0.00013 41.8 16.2 142 116-266 817-985 (1139)
252 3ffl_A Anaphase-promoting comp 92.6 2.3 7.8E-05 31.7 10.8 62 77-138 22-90 (167)
253 3txn_A 26S proteasome regulato 91.3 6.9 0.00024 34.2 21.2 16 337-352 329-344 (394)
254 3txn_A 26S proteasome regulato 91.3 7 0.00024 34.1 22.1 166 111-278 19-207 (394)
255 1v54_E Cytochrome C oxidase po 90.9 2.6 8.7E-05 28.4 9.3 50 126-175 25-74 (109)
256 3lvg_A Clathrin heavy chain 1; 90.5 0.0079 2.7E-07 53.3 -4.9 246 74-343 53-325 (624)
257 2y69_E Cytochrome C oxidase su 88.6 5.2 0.00018 28.6 9.3 46 129-174 71-116 (152)
258 3ffl_A Anaphase-promoting comp 88.4 2.2 7.7E-05 31.8 7.5 124 39-175 20-151 (167)
259 1zbp_A Hypothetical protein VP 86.2 7.2 0.00025 31.8 9.9 55 84-140 6-60 (273)
260 3o48_A Mitochondria fission 1 85.6 7.3 0.00025 27.8 8.5 24 292-315 83-106 (134)
261 4b4t_R RPN7, 26S proteasome re 84.3 16 0.00056 32.3 12.5 97 184-280 133-236 (429)
262 2p58_C Putative type III secre 84.0 7.1 0.00024 26.2 7.2 51 261-317 49-99 (116)
263 3lpz_A GET4 (YOR164C homolog); 83.6 19 0.00066 30.5 25.8 136 89-240 10-159 (336)
264 4a1g_A Mitotic checkpoint seri 83.5 11 0.00038 27.6 10.0 53 128-181 82-135 (152)
265 2uwj_G Type III export protein 82.5 6.9 0.00024 26.2 6.7 78 232-317 21-98 (115)
266 3esl_A Checkpoint serine/threo 82.4 14 0.00046 28.7 9.5 53 268-320 95-148 (202)
267 3esl_A Checkpoint serine/threo 81.2 14 0.00047 28.6 9.1 56 124-180 92-148 (202)
268 1zbp_A Hypothetical protein VP 81.0 21 0.00072 29.1 12.2 52 228-280 8-59 (273)
269 4b4t_S RPN3, 26S proteasome re 80.2 10 0.00034 34.4 9.3 63 76-139 232-298 (523)
270 2uwj_G Type III export protein 78.6 12 0.00042 25.0 9.3 87 125-221 20-106 (115)
271 2p58_C Putative type III secre 77.9 13 0.00045 24.9 10.1 88 124-221 20-107 (116)
272 1y8m_A FIS1; mitochondria, unk 77.9 17 0.00059 26.3 10.8 66 250-315 37-105 (144)
273 2wvi_A Mitotic checkpoint seri 75.6 17 0.0006 27.0 8.0 51 94-144 79-129 (164)
274 4b4t_R RPN7, 26S proteasome re 75.1 44 0.0015 29.5 19.6 101 111-211 131-237 (429)
275 1wdy_A 2-5A-dependent ribonucl 75.0 16 0.00054 29.6 8.9 48 299-346 191-240 (285)
276 2wpv_A GET4, UPF0363 protein Y 72.7 41 0.0014 28.2 18.6 25 286-310 133-157 (312)
277 4a1g_A Mitotic checkpoint seri 70.3 29 0.001 25.4 9.8 53 304-356 82-135 (152)
278 1k1a_A B-cell lymphoma 3-encod 66.3 23 0.00077 27.9 7.7 14 157-170 17-30 (241)
279 4aez_C MAD3, mitotic spindle c 64.8 20 0.00069 28.2 6.6 53 128-181 131-184 (223)
280 2wvi_A Mitotic checkpoint seri 64.5 41 0.0014 25.0 9.2 52 306-357 79-131 (164)
281 2nsz_A Programmed cell death p 62.6 32 0.0011 24.3 6.9 65 77-143 9-75 (129)
282 2kz2_A Calmodulin, CAM; TR2C, 59.8 33 0.0011 22.3 8.1 54 49-102 22-75 (94)
283 3eiq_C Programmed cell death p 58.8 87 0.003 26.8 15.0 76 255-331 220-297 (358)
284 2d2s_A Exocyst complex compone 58.0 43 0.0015 26.7 7.6 28 181-208 90-117 (235)
285 1k1a_A B-cell lymphoma 3-encod 56.6 44 0.0015 26.1 7.8 22 120-141 15-36 (241)
286 2ion_A PDCD4, programmed cell 56.4 25 0.00086 25.8 5.6 65 77-143 11-77 (152)
287 2zu6_B Programmed cell death p 56.0 71 0.0024 26.7 8.9 94 290-384 169-268 (307)
288 3lpz_A GET4 (YOR164C homolog); 55.9 94 0.0032 26.3 24.5 168 77-280 37-215 (336)
289 4aez_C MAD3, mitotic spindle c 55.4 32 0.0011 27.1 6.3 52 304-355 131-183 (223)
290 3t8k_A Uncharacterized protein 55.0 58 0.002 24.6 7.8 21 194-214 47-67 (186)
291 1wdy_A 2-5A-dependent ribonucl 54.9 31 0.001 27.8 6.7 48 262-310 189-239 (285)
292 2d2s_A Exocyst complex compone 54.4 80 0.0027 25.1 8.7 91 258-351 24-120 (235)
293 3eu9_A Huntingtin-interacting 54.4 35 0.0012 26.5 6.9 18 365-382 215-232 (240)
294 2ion_A PDCD4, programmed cell 53.6 63 0.0021 23.6 8.1 21 258-278 15-35 (152)
295 3hra_A Ankyrin repeat family p 53.5 25 0.00085 26.7 5.6 18 155-172 11-28 (201)
296 2fe3_A Peroxide operon regulat 52.6 53 0.0018 23.7 6.9 45 257-301 26-70 (145)
297 3jxi_A Vanilloid receptor-rela 52.2 14 0.00048 29.7 4.1 187 189-386 9-251 (260)
298 3bu8_A Telomeric repeat-bindin 50.6 88 0.003 24.4 11.4 49 162-210 88-142 (235)
299 3kea_A K1L; tropism, ANK repea 50.1 47 0.0016 27.1 7.1 15 85-99 38-52 (285)
300 2nsz_A Programmed cell death p 49.9 65 0.0022 22.7 9.4 22 257-278 12-33 (129)
301 2xig_A Ferric uptake regulatio 49.5 48 0.0016 24.1 6.2 45 257-301 31-75 (150)
302 3eiq_C Programmed cell death p 49.4 71 0.0024 27.4 8.0 68 77-146 219-288 (358)
303 4ets_A Ferric uptake regulatio 48.9 53 0.0018 24.3 6.5 67 164-231 15-83 (162)
304 3hra_A Ankyrin repeat family p 48.6 46 0.0016 25.0 6.5 17 84-100 11-27 (201)
305 3bu8_A Telomeric repeat-bindin 46.7 1E+02 0.0035 24.1 7.7 48 127-174 88-142 (235)
306 3t8k_A Uncharacterized protein 46.6 90 0.0031 23.4 9.6 64 223-286 41-108 (186)
307 4gq2_M Nucleoporin NUP120; bet 46.6 2.3E+02 0.0079 28.1 13.2 108 81-196 816-950 (950)
308 1zl8_A LIN-7; heterodimer, alp 46.1 39 0.0013 19.1 4.1 18 91-108 9-26 (53)
309 1mzb_A Ferric uptake regulatio 45.9 55 0.0019 23.3 6.0 32 267-298 33-64 (136)
310 3eyy_A Putative iron uptake re 45.3 42 0.0014 24.3 5.3 44 257-301 23-66 (145)
311 2f6m_A Suppressor protein STP2 44.7 34 0.0012 20.7 3.8 48 324-372 4-51 (65)
312 2w57_A Ferric uptake regulatio 44.2 58 0.002 23.7 6.0 44 258-301 22-66 (150)
313 3eu9_A Huntingtin-interacting 43.0 37 0.0013 26.4 5.3 16 85-100 16-31 (240)
314 3e3v_A Regulatory protein RECX 42.6 1.1E+02 0.0036 23.1 9.5 49 235-284 51-99 (177)
315 4ets_A Ferric uptake regulatio 42.1 69 0.0024 23.7 6.2 57 244-301 25-83 (162)
316 2xig_A Ferric uptake regulatio 41.8 97 0.0033 22.4 7.5 61 276-337 16-76 (150)
317 1bpo_A Protein (clathrin); cla 41.1 2E+02 0.0067 25.7 10.6 64 147-212 362-425 (494)
318 1bpo_A Protein (clathrin); cla 40.9 2E+02 0.0068 25.7 13.1 142 51-208 341-482 (494)
319 1qsa_A Protein (soluble lytic 40.6 2.3E+02 0.0079 26.4 36.1 179 196-381 228-437 (618)
320 3pvs_A Replication-associated 38.9 2.1E+02 0.0071 25.4 12.4 141 197-353 166-326 (447)
321 2ijq_A Hypothetical protein; s 38.8 1.2E+02 0.004 22.5 8.2 61 290-351 36-104 (161)
322 2f6m_A Suppressor protein STP2 38.7 63 0.0022 19.6 4.3 47 113-160 4-50 (65)
323 2ijq_A Hypothetical protein; s 38.1 1.2E+02 0.0041 22.4 8.2 61 325-386 36-104 (161)
324 1mzb_A Ferric uptake regulatio 37.7 1E+02 0.0036 21.8 6.4 61 277-338 8-69 (136)
325 2fe3_A Peroxide operon regulat 37.4 1.1E+02 0.0039 21.9 7.1 60 277-337 12-71 (145)
326 3c1d_A Protein ORAA, regulator 37.0 1.2E+02 0.0042 22.2 11.4 50 233-284 46-95 (159)
327 1oyz_A Hypothetical protein YI 37.0 1.6E+02 0.0055 23.6 20.0 155 144-316 103-263 (280)
328 2keb_A DNA polymerase subunit 36.8 92 0.0032 20.7 5.6 32 305-336 27-58 (101)
329 3d5l_A Regulatory protein RECX 36.6 1.5E+02 0.0052 23.2 9.8 50 234-284 93-142 (221)
330 1ug3_A EIF4GI, eukaryotic prot 36.6 1.9E+02 0.0066 24.4 9.2 25 149-173 14-38 (339)
331 4gq2_M Nucleoporin NUP120; bet 36.5 3.3E+02 0.011 27.0 11.8 48 254-301 899-950 (950)
332 2w57_A Ferric uptake regulatio 36.0 1.1E+02 0.0039 22.0 6.5 62 276-338 6-68 (150)
333 2qx5_A Nucleoporin NIC96; mRNA 35.6 2.9E+02 0.0098 26.1 10.7 16 228-243 549-564 (661)
334 3ltm_A Alpha-REP4; protein eng 35.2 1.5E+02 0.005 22.5 19.9 141 74-232 32-172 (211)
335 3b7b_A Euchromatic histone-lys 34.4 76 0.0026 24.6 5.8 16 369-384 219-234 (237)
336 2fu4_A Ferric uptake regulatio 34.4 86 0.0029 19.6 6.9 29 304-332 34-62 (83)
337 3aji_A 26S proteasome non-ATPa 34.2 78 0.0027 24.4 5.8 112 152-274 9-125 (231)
338 3kea_A K1L; tropism, ANK repea 34.2 85 0.0029 25.5 6.2 205 153-386 35-247 (285)
339 2ko4_A Mediator of RNA polymer 33.9 49 0.0017 20.9 3.3 39 167-208 24-62 (81)
340 3l6a_A Eukaryotic translation 33.2 1.5E+02 0.0052 25.4 7.7 132 254-385 14-150 (364)
341 4fke_A Aminopeptidase N; zinc 33.2 3.7E+02 0.013 26.6 18.8 166 221-389 690-863 (909)
342 3ljn_A Hypothetical protein; a 32.7 1.5E+02 0.0052 24.9 7.8 84 259-347 177-266 (364)
343 3bge_A Predicted ATPase; struc 32.5 1.7E+02 0.0058 22.5 8.6 36 194-229 19-54 (201)
344 3vu7_H DNA repair protein REV1 32.1 21 0.00071 25.1 1.7 33 70-102 55-87 (124)
345 3e3r_A Calcyphosin, calcyphosi 32.0 54 0.0018 24.8 4.4 46 57-102 38-83 (204)
346 4b4t_S RPN3, 26S proteasome re 31.7 1.2E+02 0.0042 27.5 6.9 65 287-351 231-299 (523)
347 3ljn_A Hypothetical protein; a 31.2 1.8E+02 0.006 24.5 8.0 217 144-382 16-266 (364)
348 2r9g_A AAA ATPase, central reg 31.0 1.8E+02 0.0062 22.4 10.1 55 194-249 26-85 (204)
349 3utm_A Tankyrase-1; tankyrase, 30.4 2.3E+02 0.0078 23.3 12.2 117 116-251 26-151 (351)
350 2o03_A Probable zinc uptake re 30.4 1.2E+02 0.0041 21.3 5.6 44 188-231 16-59 (131)
351 2b7e_A PRE-mRNA processing pro 30.4 40 0.0014 20.0 2.4 8 201-208 5-12 (59)
352 1wgl_A TOLL-interacting protei 30.0 58 0.002 19.3 3.2 14 196-209 37-50 (59)
353 3eyy_A Putative iron uptake re 29.7 1.4E+02 0.0048 21.4 6.0 33 128-160 34-66 (145)
354 2o03_A Probable zinc uptake re 29.6 87 0.003 22.0 4.8 44 258-301 16-59 (131)
355 3pvs_A Replication-associated 29.0 3E+02 0.01 24.3 13.2 54 264-317 267-325 (447)
356 3mwm_A ZUR, putative metal upt 28.9 1E+02 0.0034 22.0 5.0 44 293-336 19-62 (139)
357 3aji_A 26S proteasome non-ATPa 28.4 1.7E+02 0.0059 22.3 7.0 19 82-100 10-28 (231)
358 1q02_A Sequestosome 1; helical 28.3 88 0.003 17.9 4.9 37 342-380 11-47 (52)
359 2dod_A Transcription elongatio 28.1 73 0.0025 20.4 3.6 33 162-195 16-48 (82)
360 1wty_A Hypothetical protein TT 28.1 1.5E+02 0.0051 20.4 7.7 68 126-199 3-70 (119)
361 1s6c_A KV4 potassium channel-i 27.9 1.8E+02 0.0061 21.3 10.5 132 74-208 37-182 (183)
362 3i5p_A Nucleoporin NUP170; hel 27.1 3.6E+02 0.012 24.5 9.7 31 324-354 219-249 (525)
363 3bqo_A Telomeric repeat-bindin 26.9 1.5E+02 0.005 22.9 5.6 18 84-101 126-143 (211)
364 2rfa_A Transient receptor pote 26.9 2.1E+02 0.0073 21.8 8.5 14 334-347 206-219 (232)
365 3twr_A Tankyrase-2; ankyrin re 26.1 80 0.0027 22.7 4.3 17 225-241 13-29 (165)
366 1oai_A Nuclear RNA export fact 26.0 41 0.0014 19.9 2.0 21 161-181 35-55 (59)
367 2rfa_A Transient receptor pote 25.8 2.2E+02 0.0076 21.7 8.8 24 225-248 159-182 (232)
368 1ug3_A EIF4GI, eukaryotic prot 25.8 78 0.0027 26.8 4.6 63 220-283 14-77 (339)
369 2yru_A Steroid receptor RNA ac 25.7 85 0.0029 21.8 3.9 43 309-351 48-90 (118)
370 3mwm_A ZUR, putative metal upt 25.7 1.1E+02 0.0038 21.8 4.8 41 189-229 20-60 (139)
371 2etb_A Transient receptor pote 25.6 1.8E+02 0.0062 22.8 6.7 57 188-245 5-71 (256)
372 3ctd_A Putative ATPase, AAA fa 25.6 2.4E+02 0.0081 21.9 9.4 65 185-249 35-107 (213)
373 3jxi_A Vanilloid receptor-rela 24.9 39 0.0013 26.9 2.5 57 224-280 9-74 (260)
374 2rg8_A Programmed cell death p 24.8 82 0.0028 23.4 4.0 25 220-244 13-37 (165)
375 2p22_A Suppressor protein STP2 24.8 80 0.0027 23.7 3.8 55 320-375 109-163 (174)
376 2zu6_B Programmed cell death p 24.8 1.4E+02 0.0047 24.9 5.8 65 77-143 168-234 (307)
377 4g8k_A 2-5A-dependent ribonucl 24.6 3E+02 0.01 22.7 10.1 38 333-377 281-318 (337)
378 4g8k_A 2-5A-dependent ribonucl 24.3 3E+02 0.01 22.7 8.6 150 189-357 172-329 (337)
379 1n11_A Ankyrin; clathrin, BAND 24.2 1.8E+02 0.0063 25.2 7.0 301 45-381 17-332 (437)
380 1bd8_A P19INK4D CDK4/6 inhibit 24.1 91 0.0031 22.1 4.3 14 123-136 11-24 (156)
381 2jul_A Calsenilin; EF-hand, ca 24.1 2.7E+02 0.0091 22.0 10.8 135 71-208 107-255 (256)
382 2yru_A Steroid receptor RNA ac 23.8 1.1E+02 0.0038 21.2 4.2 40 134-173 49-88 (118)
383 2pnn_A Transient receptor pote 22.8 64 0.0022 25.9 3.4 55 189-243 17-80 (273)
384 1uzc_A Hypothetical protein FL 22.8 85 0.0029 19.4 3.1 32 161-193 13-44 (71)
385 3e3v_A Regulatory protein RECX 22.6 2.4E+02 0.0084 21.0 9.2 48 94-143 52-99 (177)
386 3ltj_A Alpharep-4; protein eng 22.4 2.4E+02 0.0084 20.9 18.5 16 75-90 28-43 (201)
387 3lxu_X Tripeptidyl-peptidase 2 21.7 7E+02 0.024 26.0 10.9 85 303-390 1265-1350(1354)
388 3rjo_A Endoplasmic reticulum a 21.6 4E+02 0.014 23.2 23.4 144 148-300 199-353 (419)
389 2etb_A Transient receptor pote 21.3 86 0.0029 24.8 3.9 94 223-322 5-118 (256)
390 3d9h_A CDNA FLJ77766, highly s 21.3 1.9E+02 0.0064 23.3 6.1 20 116-135 17-36 (285)
391 4b4t_O 26S proteasome regulato 21.2 4E+02 0.014 23.0 9.3 88 293-380 82-192 (393)
392 3qil_A Clathrin heavy chain 1; 20.6 1.3E+02 0.0046 20.9 3.9 51 255-308 35-85 (125)
393 2r9g_A AAA ATPase, central reg 20.6 3E+02 0.01 21.2 9.8 36 300-336 27-62 (204)
394 1n11_A Ankyrin; clathrin, BAND 20.2 1.9E+02 0.0066 25.0 6.3 268 81-382 17-300 (437)
395 3qye_A TBC1 domain family memb 20.2 2E+02 0.0068 24.1 6.0 75 308-382 209-287 (331)
396 3bqo_A Telomeric repeat-bindin 20.1 3E+02 0.01 21.2 10.3 46 162-210 94-145 (211)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-33 Score=258.17 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=98.7
Q ss_pred HHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765 131 MQTFEEMDKYGLRQSV-DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (401)
..+.+++.+.+....+ ..++.+|++|++.|++++|+++|++|.+ .|++||..+|++||.+|++.+...++
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~-------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATES-------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence 3334444444433332 2345555555555555555555555532 25555555555555555544331000
Q ss_pred hCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765 210 RKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT 289 (401)
Q Consensus 210 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 289 (401)
.+.++++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 81 ------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 00111344555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015765 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (401)
|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555444
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-31 Score=252.24 Aligned_cols=349 Identities=7% Similarity=-0.087 Sum_probs=234.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCC--------------CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-C
Q 015765 41 KKRATIARLKSESNPFRILDICCGASLAP--------------ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR-P 105 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 105 (401)
.+...+..+...|++++|+++|+...... +.+.+..+|+.++.++.+.|++++|+++|+++... +
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 44455566666677777777776432221 22445677777777777777777777777777522 1
Q ss_pred CC--------------------------------------------------------------------CCchhHHHHH
Q 015765 106 DL--------------------------------------------------------------------RQNERFHVHS 117 (401)
Q Consensus 106 ~~--------------------------------------------------------------------~~~~~~~~~l 117 (401)
.. +.+..++..+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 10 1233344444
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
+.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+. .+.+..+++.++..|.+.|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhcc
Confidence 445555555555555555554433 224444555555555555555555555555432 14456677777777888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 015765 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDG 277 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 277 (401)
+++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 389 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 389 ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888776642 3456677788888888888888888888877664 44677788888888888888888888888
Q ss_pred HHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765 278 MLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPD--SYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 278 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77653 236777888888888888888888888887765 55666 567888888888888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 352 GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 352 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+ +.+..+|..+..+|.+.|++++|.++++++.+..|.+...|..
T Consensus 546 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 589 (597)
T 2xpi_A 546 S-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589 (597)
T ss_dssp S-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 5 4577788888888888888888888888888877777665543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-33 Score=256.82 Aligned_cols=206 Identities=15% Similarity=0.213 Sum_probs=148.2
Q ss_pred HHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 015765 93 AISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN---------YE 163 (401)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 163 (401)
.+..+.+.+............++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 355556666644444443667899999999999999999999999999999999999999999998764 56
Q ss_pred HHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765 164 EVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 164 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
.|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 88 ~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67777777743 47777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc
Q 015765 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK 299 (401)
Q Consensus 244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 299 (401)
.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777776654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-31 Score=250.42 Aligned_cols=352 Identities=9% Similarity=-0.051 Sum_probs=233.2
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH
Q 015765 37 TIKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH 116 (401)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 116 (401)
+....++..+..+.+.|+++.|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+.+... +.+..++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHH
Confidence 4455677777777788888888887777652 2234456666666666666666666666665321 233445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh-C--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc-----
Q 015765 117 SIVLYGQANMIDHAMQTFEEMDK-Y--------------GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY----- 176 (401)
Q Consensus 117 li~~~~~~~~~~~a~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 176 (401)
++.+|.+.|++++|.++|+++.. . +.+.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 55555555555555555553211 1 112235555555555555555555555555443211
Q ss_pred ----------------------------------------------------------------CCCCCHHhHHHHHHHH
Q 015765 177 ----------------------------------------------------------------GIEPNSETYNKVIKSF 192 (401)
Q Consensus 177 ----------------------------------------------------------------~~~~~~~~~~~l~~~~ 192 (401)
..+++..+++.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 0125666777777777
Q ss_pred HhcCChhHHHHHHHHHHhCC---------------------------------CCCCHHhHHHHHHHHHccCChHHHHHH
Q 015765 193 CESGDSSSVYSILAEMRRKS---------------------------------IRPNATDFGLLLAGFYKEHKYEDVGKV 239 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (401)
.+.|++++|.++|+++.+.+ .+.+..++..++..|.+.|++++|.++
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 77777777777777765432 123456677777777777777777777
Q ss_pred HHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCC
Q 015765 240 LQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE 319 (401)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 319 (401)
|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 77776653 3356677778888888888888888888777764 2366777788888888888888888888877653 3
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765 320 PDSYCFFMFTYFLCQGGEYETALKVCRASMAK----GWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDM 393 (401)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (401)
.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+..|.+..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 46777888888888888888888888887776 55666 6788888888888888888888888888877777777
Q ss_pred chhc
Q 015765 394 WNAA 397 (401)
Q Consensus 394 ~~~l 397 (401)
|..+
T Consensus 553 ~~~l 556 (597)
T 2xpi_A 553 HTAI 556 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.6e-27 Score=209.96 Aligned_cols=343 Identities=10% Similarity=-0.028 Sum_probs=296.4
Q ss_pred HHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHH
Q 015765 42 KRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLY 121 (401)
Q Consensus 42 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 121 (401)
.......+...++.++|...++.+... .|.+...|..+...+.+.|++++|++.|+++.... |.+...+..+..++
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHH
Confidence 334456677888999999999877654 44578899999999999999999999999988432 34466889999999
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 015765 122 GQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSV 201 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 201 (401)
.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|
T Consensus 112 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 188 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998875 4456778888899999999999999999997652 44577899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765 202 YSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
.+.|+++.+.+ +.+...+..+...+...|++++|...+++..+.. +.+..++..+..++.+.|++++|...|+++.+.
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999998864 4467789999999999999999999999998864 446788999999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 015765 282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMK 361 (401)
Q Consensus 282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 361 (401)
+. .+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++.
T Consensus 267 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 343 (388)
T 1w3b_A 267 QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHS 343 (388)
T ss_dssp CS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 43 257889999999999999999999999999763 5578899999999999999999999999998764 55688999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 362 SLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 362 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
.+..+|.+.|++++|.+.++++.+..|.+...|..
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~ 378 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHh
Confidence 99999999999999999999999988888776654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.1e-26 Score=205.60 Aligned_cols=338 Identities=10% Similarity=0.006 Sum_probs=292.3
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015765 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 126 (401)
..+-+.|++++|++.+..+... .|.+...+..+...+...|++++|...++...... |.+...+..+...|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCC
Confidence 3455678899999999887644 33466778888899999999999999999887432 4457789999999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHH
Q 015765 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSIL 205 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 205 (401)
+++|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+. .|+ ...+..+...+...|++++|.+.|
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999998875 556778999999999999999999999999865 444 556778888899999999999999
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 015765 206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP 285 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 285 (401)
+++.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++...... .
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence 9998763 4467889999999999999999999999999875 44677889999999999999999999999988642 2
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015765 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT 365 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (401)
+..++..+...|...|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 57889999999999999999999999999864 3356789999999999999999999999999875 668899999999
Q ss_pred HHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765 366 GLASISKVAEANELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 366 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 397 (401)
.+.+.|++++|.+.++++.+..|.+...|..+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 345 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999999999999988887776654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.7e-24 Score=196.77 Aligned_cols=314 Identities=12% Similarity=0.050 Sum_probs=249.2
Q ss_pred CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765 71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN 150 (401)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (401)
.|.+...+..+...+.+.|++++|+.+|+.+... .+.+...+..+..+|...|++++|...|+++.+.+ +.+..++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 98 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL 98 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 3447778888888999999999999999888743 23346788888888899999999999999888876 55678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH----HhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCC
Q 015765 151 ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS----ETYNKV------------IKSFCESGDSSSVYSILAEMRRKSIR 214 (401)
Q Consensus 151 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 214 (401)
.+..+|.+.|++++|.+.|+++.+. .|+. ..+..+ ...+.+.|++++|.+.|+++.+.. +
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 174 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKS---NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-V 174 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 8888999999999999999888643 4443 445444 344788899999999999887753 4
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH-
Q 015765 215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL- 293 (401)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l- 293 (401)
.+...+..+..+|.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++..... .+...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHH
Confidence 577788888899999999999999998887763 44678888889999999999999999998887532 234444444
Q ss_pred -----------HHHHhcCCChHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 015765 294 -----------IHGFGKEGNLEGAKKLFASMTNGGCEPD-----SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357 (401)
Q Consensus 294 -----------i~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 357 (401)
...|...|++++|.++|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 77888889999999999998874 344 3467888888999999999999999888764 4567
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 358 STMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
..+..+..+|...|++++|.+.++++.+..|.+...|..
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 368 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHH
Confidence 888899999999999999999999998888877766544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.3e-23 Score=188.75 Aligned_cols=337 Identities=13% Similarity=0.083 Sum_probs=274.0
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHH
Q 015765 39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSI 118 (401)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 118 (401)
...+......+...|+++.|+..|+.+... .+.+...|..+..++...|++++|+..|+++.... +.+...+..+.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 101 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 345666677888899999999999988754 34478899999999999999999999999998432 33467899999
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHH------------HHHHhcCCHHHHHHHHHhchhhcCCCCCHH
Q 015765 119 VLYGQANMIDHAMQTFEEMDKYGLRQSV---DALNALL------------LGCILSKNYEEVKRIFTEFPKVYGIEPNSE 183 (401)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 183 (401)
.+|.+.|++++|.+.|+++.+.+ +.+. ..+..+. ..+...|++++|+..|+++.+.. +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH
Confidence 99999999999999999999875 3344 5665553 44889999999999999997653 55778
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH-----
Q 015765 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR----- 258 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 258 (401)
++..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 89999999999999999999999998763 4578899999999999999999999999998764 3344445444
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHH
Q 015765 259 -------IQSLCKLKRSEEAKALLDGMLSRGIKPN-----LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFF 326 (401)
Q Consensus 259 -------l~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 326 (401)
...+.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|.+.++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 788999999999999999998863 34 4578888999999999999999999998753 34678999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH------------HHHccC-----CHHHHHHHHHH-HHhcCC
Q 015765 327 MFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT------------GLASIS-----KVAEANELIGL-MKKRFP 388 (401)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~~~~~-~~~~~~ 388 (401)
.+..+|...|++++|...++++.+.. +-+...+..+.. .|...| +.+++.+.+++ ..+..|
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999764 335566666663 344444 56777888886 344344
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-22 Score=186.76 Aligned_cols=242 Identities=9% Similarity=0.008 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 015765 147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG 226 (401)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (401)
.++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|.+.++++.... +.+...+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 34555555566666666666666666543 2335556666666666666666666666665542 3345566666666
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHH
Q 015765 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGA 306 (401)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a 306 (401)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 667777777777777666653 3345566666667777777777777777766542 22445666667777777777777
Q ss_pred HHHHHHHHhCCC-CCC----HhhHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015765 307 KKLFASMTNGGC-EPD----SYCFFMFTYFLCQ---GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE 378 (401)
Q Consensus 307 ~~~~~~m~~~~~-~~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 378 (401)
.+.++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777664311 111 2266677777777 777777777777776654 3456667777777777777777777
Q ss_pred HHHHHHhcCCCCcccch
Q 015765 379 LIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 379 ~~~~~~~~~~~~~~~~~ 395 (401)
.+++..+..|.+...+.
T Consensus 471 ~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHhccccHHHHH
Confidence 77777777666655554
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.7e-21 Score=171.08 Aligned_cols=312 Identities=11% Similarity=0.038 Sum_probs=249.1
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+...+..+...+...|++++|+..|+++.... |.+...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 45677788888899999999999999887432 3346688888888999999999999999988765 45678888888
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCC----CHHhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEP----NSETYNKV------------IKSFCESGDSSSVYSILAEMRRKSIRPNA 217 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 217 (401)
.++...|++++|...|++..+. .| +...+..+ ...+...|++++|.+.++++.+.. +.+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 154 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDA 154 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCch
Confidence 8999999999999999988643 45 33344444 577888999999999999988763 4567
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH------
Q 015765 218 TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYK------ 291 (401)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~------ 291 (401)
..+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+.... +...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~ 232 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHH
Confidence 888888999999999999999999988864 456788888999999999999999999998876322 333332
Q ss_pred ------HHHHHHhcCCChHHHHHHHHHHHhCCCCCC-H----hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 015765 292 ------HLIHGFGKEGNLEGAKKLFASMTNGGCEPD-S----YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTM 360 (401)
Q Consensus 292 ------~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 360 (401)
.+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...++++.+.. +.+..++
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 23566888999999999999988753 33 2 234557788899999999999999998864 4578889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765 361 KSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 361 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 397 (401)
..+...|...|++++|.+.++++.+..|.+...+..+
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999999999999999999888887766543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.7e-20 Score=175.41 Aligned_cols=345 Identities=10% Similarity=0.036 Sum_probs=248.0
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS 117 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 117 (401)
....+......+...|+++.|++.|+.+... .|.+...|..+..++.+.|++++|++.++++.... |.+...+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 99 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHH
Confidence 3445566667888889999999999988754 34477899999999999999999999999988432 3456788888
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC---------------------------------------------------------
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKY--------------------------------------------------------- 140 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~--------------------------------------------------------- 140 (401)
..++...|++++|...|+.+...
T Consensus 100 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999998877433100
Q ss_pred --------------------------------------------------CCCCC--------HHHHHHHHHHHHhcCCH
Q 015765 141 --------------------------------------------------GLRQS--------VDALNALLLGCILSKNY 162 (401)
Q Consensus 141 --------------------------------------------------~~~~~--------~~~~~~l~~~~~~~~~~ 162 (401)
...|+ ..++..+...+...|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 00111 12344445566677777
Q ss_pred HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHH
Q 015765 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQM 242 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 242 (401)
++|...|++..+. .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 260 ~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 260 LDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8888888777654 5556677777777778888888888888877653 34567777788888888888888888888
Q ss_pred HHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-----
Q 015765 243 MEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG----- 317 (401)
Q Consensus 243 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----- 317 (401)
+.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 336 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 77764 3356677778888888888888888888877763 2245677777888888888888888888776532
Q ss_pred CCCCHhhHHHHHHHHHcc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765 318 CEPDSYCFFMFTYFLCQG----------GEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 318 ~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
.......+......+... |++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111112234445566666 88888888888887764 4567788888888999999999999999888877
Q ss_pred CCCccc
Q 015765 388 PKSGDM 393 (401)
Q Consensus 388 ~~~~~~ 393 (401)
|.+...
T Consensus 493 ~~~~~~ 498 (537)
T 3fp2_A 493 RTMDEK 498 (537)
T ss_dssp --CHHH
T ss_pred CCcHHH
Confidence 665443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.6e-19 Score=159.66 Aligned_cols=316 Identities=12% Similarity=0.069 Sum_probs=256.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
.+......+...|+++.|++.|+.+... .+.+...+..+...+...|++++|...++.+.... +.+...+..+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHH
Confidence 4445566778889999999999988654 33467899999999999999999999999988432 3345788999999
Q ss_pred HHhcCChHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH
Q 015765 121 YGQANMIDHAMQTFEEMDKYGLR---QSVDALNAL------------LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY 185 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 185 (401)
+...|++++|...|+++.+.. + .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 999999999999999998864 3 345555555 578889999999999999997653 5567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHH---------
Q 015765 186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYN--------- 256 (401)
Q Consensus 186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 256 (401)
..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 999999999999999999999998863 5578899999999999999999999999998864 23333333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 015765 257 ---IRIQSLCKLKRSEEAKALLDGMLSRGIKPNL----DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFT 329 (401)
Q Consensus 257 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 329 (401)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2366788999999999999999886432 33 235567788999999999999999998863 34678899999
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 015765 330 YFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLA 368 (401)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 368 (401)
..+...|++++|.+.++++.+.. +.+...+..+..+..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 99999999999999999999764 334556666655543
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.6e-20 Score=162.81 Aligned_cols=295 Identities=7% Similarity=-0.045 Sum_probs=229.3
Q ss_pred CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765 71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN 150 (401)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (401)
.+.+...+......+...|++++|+++|+.+.... +.+...+..++..+...|++++|..+++++.+.. +.+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 44566778888888888999999999999887432 2234466677788888899999999999988865 45677888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765 151 ALLLGCILSK-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229 (401)
Q Consensus 151 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (401)
.+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHH
Confidence 8888888898 8999999999887542 4456778888889999999999999999987763 3355667778888889
Q ss_pred cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHHHHHHHHHHhcCC
Q 015765 230 EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG--------IKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~~ 301 (401)
.|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.. ...+..++..+...|...|
T Consensus 172 ~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 999999999999888764 4466788888888999999999999998887641 1223567888888888999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHH
Q 015765 302 NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL-ASISKVA 374 (401)
Q Consensus 302 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 374 (401)
++++|.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999998888753 3356778888888889999999999998887654 44677777777777 4555543
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-20 Score=173.82 Aligned_cols=347 Identities=12% Similarity=0.043 Sum_probs=284.6
Q ss_pred HHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015765 40 EKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV 119 (401)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 119 (401)
..+......+...|+++.|+..|..+.... |+...|..+..++.+.|++++|++.++.+.... |.+...+..+..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 344555677788899999999999987653 478899999999999999999999999988432 445678999999
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCC-------------------------------------------------------
Q 015765 120 LYGQANMIDHAMQTFEEMDKYGLRQ------------------------------------------------------- 144 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~------------------------------------------------------- 144 (401)
+|...|++++|...|+++.+.+...
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998765210
Q ss_pred -----------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHhchh-----hcCC-------CCCHHhHH
Q 015765 145 -----------------------SVDALNALLLGCIL---SKNYEEVKRIFTEFPK-----VYGI-------EPNSETYN 186 (401)
Q Consensus 145 -----------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~ 186 (401)
+...+......+.. .|++++|...|+++.+ .... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 13333333333443 8999999999999876 2111 22345788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC
Q 015765 187 KVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK 266 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 266 (401)
.+...+...|++++|...++++.+.. |+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999998864 338888999999999999999999999998874 446788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 015765 267 RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCR 346 (401)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (401)
++++|...+++..+.... +...+..+...|...|++++|.++++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987533 56789999999999999999999999998753 3356788999999999999999999999
Q ss_pred HHHHCCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 347 ASMAKGW-VPH----FSTMKSLVTGLAS---ISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 347 ~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
++.+... .++ ...+..+...+.. .|++++|.+.++++.+..|.+...|..
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 9887531 111 3488999999999 999999999999999988877766543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.2e-19 Score=158.60 Aligned_cols=278 Identities=9% Similarity=-0.076 Sum_probs=194.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~ 98 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC 98 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence 4456667777777778888888777777654 4455556666677777777888877777776542 345566777777
Q ss_pred HHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015765 191 SFCESG-DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE 269 (401)
Q Consensus 191 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 269 (401)
.+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 777777 7777777777776653 3345667777777777778888877777777654 334556666777777777888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHccCCHHHH
Q 015765 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG--------CEPDSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~a 341 (401)
+|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. ...+...+..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8887777777663 2356777777777777778887777777766531 122345677777777777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765 342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (401)
...++++.+.. +.+...+..+...|.+.|++++|.+.+++..+..|.+...|.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence 87777777654 345667777777777778888888777777777766665544
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=5.7e-20 Score=163.33 Aligned_cols=295 Identities=9% Similarity=-0.025 Sum_probs=224.3
Q ss_pred HHhCCCchHHHH-HHHHhhhC-CCCC-CchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765 85 LSQANHFNAISQ-LLEELKTR-PDLR-QNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 85 ~~~~~~~~~a~~-~~~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
+...|++++|++ .+++.... +..+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 77765522 2111 123456778888889999999999999988875 5678888888899999999
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH---------------HHHH
Q 015765 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL---------------LLAG 226 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~ 226 (401)
+++|...|+++.+.. +.+..++..+...+...|++++|.+.++++..... .+...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999999887653 45677888888999999999999999999887642 22222221 2344
Q ss_pred HHccCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015765 227 FYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG 305 (401)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 305 (401)
+...|++++|...++++.+..... +..++..+..++...|++++|...|+++.+.. +.+..+|..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 448899999999999998864221 47788999999999999999999999998863 3367889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHccCCHHH
Q 015765 306 AKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWV----------PHFSTMKSLVTGLASISKVAE 375 (401)
Q Consensus 306 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~ 375 (401)
|.+.++++.+.. +.+...+..+...|.+.|++++|...++++.+.... ....+|..+..+|...|++++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999998753 345778999999999999999999999998875311 126889999999999999999
Q ss_pred HHHHHHHHHh
Q 015765 376 ANELIGLMKK 385 (401)
Q Consensus 376 a~~~~~~~~~ 385 (401)
|..++++..+
T Consensus 349 A~~~~~~~l~ 358 (368)
T 1fch_A 349 YGAADARDLS 358 (368)
T ss_dssp HHHHHTTCHH
T ss_pred HHHhHHHHHH
Confidence 9998775443
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=7.7e-19 Score=164.16 Aligned_cols=305 Identities=10% Similarity=0.027 Sum_probs=170.6
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
....|..+...+.+.|++++|++.|+++.... |.+...+..+..+|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 34678888999999999999999999998432 4456789999999999999999999999999876 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcC-----------------------------------CCCCHH---------------
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYG-----------------------------------IEPNSE--------------- 183 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~-----------------------------------~~~~~~--------------- 183 (401)
.++...|++++|...|+.+..... ..|+..
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999999988853311000 000000
Q ss_pred ---------------hHHHHHHHHH--------hcCChhHHHHHHHHHHhCCCCCC-------HHhHHHHHHHHHccCCh
Q 015765 184 ---------------TYNKVIKSFC--------ESGDSSSVYSILAEMRRKSIRPN-------ATDFGLLLAGFYKEHKY 233 (401)
Q Consensus 184 ---------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~ 233 (401)
....+...+. ..|++++|..+++++.+.. +.+ ..++..+...+...|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 0000000000 0124455555555554432 111 11233444444455555
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASM 313 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 313 (401)
++|...++.+.+.. |+...+..+...+...|++++|...++++.+... .+..+|..+...+...|++++|.+.++++
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55555555554432 2244444455555555555555555555544321 13444555555555555555555555555
Q ss_pred HhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765 314 TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 337 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 4432 1223444445555555555555555555554442 2334444455555555555555555555554443
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=3.2e-19 Score=158.52 Aligned_cols=290 Identities=11% Similarity=-0.039 Sum_probs=229.1
Q ss_pred cCCChhHHHH-HhhhccCCCCCCc--cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCCh
Q 015765 51 SESNPFRILD-ICCGASLAPESPL--DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMI 127 (401)
Q Consensus 51 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 127 (401)
..++++.|++ .+.......+..| +...+..+...+.+.|++++|+..|+++.... +.+...+..+..++...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 4467888888 7776543222222 35678889999999999999999999998543 44577899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH---------------HHHHH
Q 015765 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK---------------VIKSF 192 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 192 (401)
++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+.. .+..+
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999876 5688999999999999999999999999997642 222222221 23444
Q ss_pred HhcCChhHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765 193 CESGDSSSVYSILAEMRRKSIR-PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 271 (401)
...|++++|...|+++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 4889999999999999876322 157889999999999999999999999998874 44678899999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC----------CHhhHHHHHHHHHccCCHHHH
Q 015765 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP----------DSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~a 341 (401)
...|+++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+..... ...+|..+..+|...|+.++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998864 3367889999999999999999999999988642111 257899999999999999999
Q ss_pred HHHHHH
Q 015765 342 LKVCRA 347 (401)
Q Consensus 342 ~~~~~~ 347 (401)
..++++
T Consensus 350 ~~~~~~ 355 (368)
T 1fch_A 350 GAADAR 355 (368)
T ss_dssp HHHHTT
T ss_pred HHhHHH
Confidence 998764
No 19
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=3.3e-19 Score=155.58 Aligned_cols=282 Identities=7% Similarity=-0.019 Sum_probs=174.9
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+...+......+...|++++|..+|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 33445556666666666666666666665321 2234555666666666666666666666666553 34555666666
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH-HH-HHHcc
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLL-LA-GFYKE 230 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~-~~~~~ 230 (401)
..+...|++++|.+.++++.+. .|+ ...+..+... .|+......+ .. .+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLS---QPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT---STTTTTC------------------------------------------CCTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHc
Confidence 6666666666666666666543 222 1112111000 0011111111 11 25666
Q ss_pred CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015765 231 HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 310 (401)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+
T Consensus 152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777777654 3356677777777788888888888888777653 225677777788888888888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccCCHHHHHHH
Q 015765 311 ASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP-----------HFSTMKSLVTGLASISKVAEANEL 379 (401)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~ 379 (401)
+++.+.. +.+...+..+...+...|++++|.+.++++.+..... +...+..+..++.+.|++++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8877653 3356677778888888888888888888777653111 366778888888888888888888
Q ss_pred HHHHHhc
Q 015765 380 IGLMKKR 386 (401)
Q Consensus 380 ~~~~~~~ 386 (401)
+++..+.
T Consensus 309 ~~~~l~~ 315 (327)
T 3cv0_A 309 YAQNVEP 315 (327)
T ss_dssp TTCCSHH
T ss_pred HHHHHHh
Confidence 7765544
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=8.1e-19 Score=155.82 Aligned_cols=267 Identities=7% Similarity=-0.084 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..|++..+.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3457777888888899999999998888765 5578888888888889999999999998887653 445778888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC----------HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CchhHHHHH
Q 015765 191 SFCESGDSSSVYSILAEMRRKSIRPN----------ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRI 259 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll 259 (401)
.|...|++++|.+.|+++.+.. +.+ ...+..+...+...|++++|...++++.+..... +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 8999999999999998887642 111 2223345778889999999999999998874221 577889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015765 260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (401)
..+...|++++|...|++..+.. +.+..+|..+..+|...|++++|.+.|+++.+.. +.+...+..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998874 3367899999999999999999999999998763 334778999999999999999
Q ss_pred HHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765 340 TALKVCRASMAKGWV-----------PHFSTMKSLVTGLASISKVAEANELIGLM 383 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (401)
+|...++++.+.... .+..++..+..++...|+.+.+.++.++-
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999998875211 13678899999999999999888876653
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2.2e-18 Score=147.56 Aligned_cols=252 Identities=7% Similarity=0.020 Sum_probs=144.2
Q ss_pred HHHHhCCCchHHHHHHHHhhhCCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765 83 SKLSQANHFNAISQLLEELKTRPDLRQN-ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
+.....|+++.|+..++..... .|.+ ......+.++|...|+++.|+..++.. -+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 4445566777777666654311 1111 123344556666677776666655431 14555666666666666666
Q ss_pred HHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 015765 162 YEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVL 240 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (401)
.++|++.++++... +..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 81 ~~~A~~~l~~ll~~-~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 81 RDAIVAELDREMSR-SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp HHHHHHHHHHHHHS-CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777776666433 2223 344455555666666777777766665 345566666666666677777777777
Q ss_pred HHHHHcCCCCCchhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015765 241 QMMEKCGIASGVNVY---NIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317 (401)
Q Consensus 241 ~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 317 (401)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++..+..
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666653 332211 112233334466666666666666652 3355666666666666666666666666666542
Q ss_pred CCCCHhhHHHHHHHHHccCCHHH-HHHHHHHHHHC
Q 015765 318 CEPDSYCFFMFTYFLCQGGEYET-ALKVCRASMAK 351 (401)
Q Consensus 318 ~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 351 (401)
+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2345566666666666666644 45666666654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=1.4e-18 Score=154.35 Aligned_cols=266 Identities=12% Similarity=-0.008 Sum_probs=218.6
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+...|..+...+.+.|++++|++.|+++.... |.+...+..+...|...|++++|+..|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 45568889999999999999999999998432 3447789999999999999999999999999875 56789999999
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCCH-----------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHhHH
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNS-----------ETYNKVIKSFCESGDSSSVYSILAEMRRKSIR-PNATDFG 221 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 221 (401)
.+|...|++++|...|+++.+. .|+. ..+..+...+.+.|++++|.+.|+++.+.... .+..++.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ---NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh---CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 9999999999999999999764 3332 22334578889999999999999999886422 2688999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765 222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
.+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|++..+.. +.+..++..+..+|...|
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 99999999999999999999998874 4567899999999999999999999999998874 235888999999999999
Q ss_pred ChHHHHHHHHHHHhCCC---C--------CCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765 302 NLEGAKKLFASMTNGGC---E--------PDSYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 302 ~~~~a~~~~~~m~~~~~---~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
++++|.+.|+++.+... . .+...|..+..++...|+.+.+.++..+
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999886421 1 1357889999999999999999887764
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=2.9e-18 Score=149.55 Aligned_cols=279 Identities=10% Similarity=0.008 Sum_probs=177.4
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS 117 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 117 (401)
....+......+...+++++|+..++.+... .+.+...+..+...+...|++++|.+.++++.... +.+...+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHH
Confidence 3344555567778889999999999988754 34477889999999999999999999999988442 3446788899
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH--HHHhc
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK--SFCES 195 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 195 (401)
...|...|++++|.+.++++.+.. +.+...+..+... .|+......+.. .+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 151 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA-----------------------DVDIDDLNVQSEDFFFAAP 151 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC-------------------------------------------CCTTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH-----------------------HHHHHHHHHHHHhHHHHHc
Confidence 999999999999999999998864 2233333322100 011111111111 13444
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 015765 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALL 275 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 275 (401)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 152 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 229 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAY 229 (327)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555442 2245555555566666666666666666655543 234555666666666667777777766
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHccCCHHHHHHH
Q 015765 276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP-----------DSYCFFMFTYFLCQGGEYETALKV 344 (401)
Q Consensus 276 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~ 344 (401)
+++.+.. +.+...+..+...|...|++++|.+.++++.+..... +...+..+..++...|++++|..+
T Consensus 230 ~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 230 NRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6666543 2245666667777777777777777777666542111 355677777777777777777777
Q ss_pred HHH
Q 015765 345 CRA 347 (401)
Q Consensus 345 ~~~ 347 (401)
+++
T Consensus 309 ~~~ 311 (327)
T 3cv0_A 309 YAQ 311 (327)
T ss_dssp TTC
T ss_pred HHH
Confidence 654
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=7.5e-20 Score=172.92 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=59.6
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHH---HcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 015765 218 TDFGLLLAGFYKEHKYEDVGKVLQMME---KCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLI 294 (401)
Q Consensus 218 ~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li 294 (401)
.||+++|++|++.|++++|.++|++|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 345555555555555555555554443 23445555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCCh-HHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765 295 HGFGKEGNL-EGAKKLFASMTNGGCEPDSYCFFMFTYF 331 (401)
Q Consensus 295 ~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~ 331 (401)
.++++.|+. ++|.++|++|.+.|+.||..+|+.++..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 555555542 4455555555555555555555555443
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=3.7e-20 Score=174.95 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=112.1
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015765 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLS---RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM 327 (401)
Q Consensus 251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 327 (401)
-..+||++|.+||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 015765 328 FTYFLCQGGE-YETALKVCRASMAKGWVPHFSTMKSLVTGLASI 370 (401)
Q Consensus 328 li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 370 (401)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999998 578999999999999999999999998766554
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=5.1e-15 Score=136.67 Aligned_cols=309 Identities=10% Similarity=0.026 Sum_probs=173.8
Q ss_pred CCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHh----CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh----
Q 015765 52 ESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQ----ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ---- 123 (401)
Q Consensus 52 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 123 (401)
.+++++|++.|+.+.... +...+..+...+.. .+++++|.+.|++....+ +...+..+...|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCC
Confidence 667777777777665432 34566666666666 677777777777766432 23445556666665
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----c
Q 015765 124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----S 195 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 195 (401)
.+++++|...|++..+.| +...+..+...|.. .++.++|++.|++..+. .+...+..+...|.. .
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~ 200 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVE 200 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCC
Confidence 566777777777666654 44555555555555 55666666666665432 244555555555555 5
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCC----------------------
Q 015765 196 GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK----EHKYEDVGKVLQMMEKCGIA---------------------- 249 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~---------------------- 249 (401)
++.++|.++|++..+.| +...+..+...|.. .+++++|...|++..+.+..
T Consensus 201 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 201 RNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHH
Confidence 55566666655555443 33334444444433 34444444444444433210
Q ss_pred -----------CCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC---ChHHHHHHH
Q 015765 250 -----------SGVNVYNIRIQSLCKL-----KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG---NLEGAKKLF 310 (401)
Q Consensus 250 -----------~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~ 310 (401)
-+...+..+...|... +++++|...|++..+.| +...+..+...|...| ++++|.++|
T Consensus 278 A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 278 ALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 1223344444444444 55555555555555543 3344444555544434 555666666
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 015765 311 ASMTNGGCEPDSYCFFMFTYFLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISKVAEANELIGL 382 (401)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 382 (401)
++..+.| +...+..+...|.. .+++++|.+.+++..+.+ +...+..+...|.+ .+++++|...|++
T Consensus 355 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 355 RKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 6665542 44555566666665 567777777777766654 35566666666665 6677777777777
Q ss_pred HHhcC
Q 015765 383 MKKRF 387 (401)
Q Consensus 383 ~~~~~ 387 (401)
..+..
T Consensus 429 A~~~~ 433 (490)
T 2xm6_A 429 ASTND 433 (490)
T ss_dssp HHHHH
T ss_pred HHHCC
Confidence 66654
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=9.3e-17 Score=137.40 Aligned_cols=253 Identities=14% Similarity=0.133 Sum_probs=120.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765 122 GQANMIDHAMQTFEEMDKYGLRQSV--DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
...|++..|+..++..... .|+. .....+..+|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcHH
Confidence 3445555555555544332 1221 23333445555555555555444331 1344445555555555555555
Q ss_pred HHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015765 200 SVYSILAEMRRKSIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 278 (401)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555443222 233344444555555555555555544 234445555555555555555555555555
Q ss_pred HHCCCCcCHHHH---HHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015765 279 LSRGIKPNLDTY---KHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355 (401)
Q Consensus 279 ~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (401)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5442 221111 112222333455555555555555441 3344455555555555555555555555555443 33
Q ss_pred CHHHHHHHHHHHHccCCHHH-HHHHHHHHHhcCCCCc
Q 015765 356 HFSTMKSLVTGLASISKVAE-ANELIGLMKKRFPKSG 391 (401)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~ 391 (401)
+..++..++..+...|+.++ +.++++++.+..|.++
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 44455555555555555543 3455555555555443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=3.1e-18 Score=150.15 Aligned_cols=287 Identities=9% Similarity=0.033 Sum_probs=134.4
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC
Q 015765 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM 126 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 126 (401)
.++...++.++|.++++... +..+|..++.++.+.|++++|++.|.+. +|...|..++..+...|+
T Consensus 11 ~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCC
Confidence 34567778999999998872 2348999999999999999999999663 234578889999999999
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHH
Q 015765 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILA 206 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 206 (401)
+++|++.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|.
T Consensus 77 ~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 77 WEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ----------------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHH
T ss_pred HHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999988877664 4567889999999999999999887773 3677799999999999999999999999
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 015765 207 EMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN 286 (401)
Q Consensus 207 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 286 (401)
.+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 76 47999999999999999999999988 267899999999999999999966555422 23
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC------CHHH
Q 015765 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-GWVP------HFST 359 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~ 359 (401)
+.-...++..|.+.|.+++|..+++...... .-....|+.+..+|++- ++++.++.++..... +++| +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4445578999999999999999999998654 44566777777777654 344444444433222 3333 4567
Q ss_pred HHHHHHHHHccCCHHHHHHH
Q 015765 360 MKSLVTGLASISKVAEANEL 379 (401)
Q Consensus 360 ~~~l~~~~~~~g~~~~a~~~ 379 (401)
|.-++..|.+.++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88899999999999988764
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=2.3e-14 Score=132.24 Aligned_cols=287 Identities=10% Similarity=0.000 Sum_probs=212.7
Q ss_pred cHhHHHHHHHHHHh----CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCC
Q 015765 74 DRMAFSIAVSKLSQ----ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ----ANMIDHAMQTFEEMDKYGLRQS 145 (401)
Q Consensus 74 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 145 (401)
+...+..+...+.. .+++++|++.|++....+ +...+..+...|.. .+++++|.+.|++..+.| +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 56677777777777 899999999999988653 25577888888988 899999999999998865 6
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCH
Q 015765 146 VDALNALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----SGDSSSVYSILAEMRRKSIRPNA 217 (401)
Q Consensus 146 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 217 (401)
...+..|...|.. .+++++|+..|++..+. -+...+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 6778888888888 78999999999998653 367778888888887 789999999999998875 67
Q ss_pred HhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765 218 TDFGLLLAGFYK----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDT 289 (401)
Q Consensus 218 ~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~ 289 (401)
..+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.| +...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 888888888887 899999999999998865 45567777777775 678888888888877664 4455
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 015765 290 YKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG-----GEYETALKVCRASMAKGWVPHFSTM 360 (401)
Q Consensus 290 ~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~ 360 (401)
+..+...|.. .+++++|.++|++..+.| +...+..+...|... +++++|...+++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 5556666655 677777777777776543 334555555555554 56666666666665553 23444
Q ss_pred HHHHHHHHccC---CHHHHHHHHHHHHhc
Q 015765 361 KSLVTGLASIS---KVAEANELIGLMKKR 386 (401)
Q Consensus 361 ~~l~~~~~~~g---~~~~a~~~~~~~~~~ 386 (401)
..+...|...| ++++|.+.+++..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 44555554433 455555555555443
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.8e-16 Score=131.97 Aligned_cols=227 Identities=12% Similarity=0.080 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 192 (401)
.+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|.+.+++..+.. |+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~----------- 70 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG---RE----------- 70 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---cc-----------
Confidence 44445555555555555555555555544 344455555555555555555555555544321 11
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 015765 193 CESGDSSSVYSILAEMRRKSIRPN----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRS 268 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 268 (401)
..++ ...+..+...+...|++++|...++++.+.. |+ ...+...|++
T Consensus 71 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~ 121 (258)
T 3uq3_A 71 --------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNA 121 (258)
T ss_dssp --------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHH
T ss_pred --------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHH
Confidence 0011 2344444444444555555555554444432 22 1234444555
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 015765 269 EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRAS 348 (401)
Q Consensus 269 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (401)
++|...++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 122 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666555542 1133455555666666666666666666665542 234555666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765 349 MAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 349 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
.+.. +.+...+..+..+|.+.|++++|.+.+++..+..
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 6553 3345566666666666666666666666666654
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.2e-15 Score=140.22 Aligned_cols=347 Identities=8% Similarity=-0.077 Sum_probs=231.0
Q ss_pred HHHHHHHHHHhcCCChhHHHHHhhhccC-------CCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhh------CCC
Q 015765 40 EKKRATIARLKSESNPFRILDICCGASL-------APESPLDRMAFSIAVSKLSQANHFNAISQLLEELKT------RPD 106 (401)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~ 106 (401)
..++..-.+....|+.++|++.|+.+.. ....+....+|..+..++...|++++|...+++... .+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3455566777888999999998876531 111333567899999999999999999999988762 111
Q ss_pred CCCchhHHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHhchhhcCCCCC
Q 015765 107 LRQNERFHVHSIVLYGQ--ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGC---ILSKNYEEVKRIFTEFPKVYGIEPN 181 (401)
Q Consensus 107 ~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 181 (401)
.+....++.....++.. .+++++|+..|++..+.. +.+...+..+..++ ...++.++|++.+++..+.. +.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~ 208 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN 208 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence 22224566655555554 457999999999998875 44566666555543 44577788888888876552 344
Q ss_pred HHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHH
Q 015765 182 SETYNKVIKSFCE----SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNI 257 (401)
Q Consensus 182 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 257 (401)
..++..+...+.. .+++++|.+.+++..... +.+..++..+...+...|++++|...+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5566666555544 467889999999987763 5567788999999999999999999999998864 335566666
Q ss_pred HHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC
Q 015765 258 RIQSLCKL-------------------KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC 318 (401)
Q Consensus 258 ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 318 (401)
+..+|... +.++.|...+++..+... .+..++..+...|...|++++|.+.|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 66555332 235677778887776532 2456788889999999999999999999987643
Q ss_pred CCCHh--hHHHHHH-HHHccCCHHHHHHHHHHHHHCC-----------------------CCCCHHHHHHHHHHHHccCC
Q 015765 319 EPDSY--CFFMFTY-FLCQGGEYETALKVCRASMAKG-----------------------WVPHFSTMKSLVTGLASISK 372 (401)
Q Consensus 319 ~~~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~ 372 (401)
.+... .+..+.. .....|+.++|+..+++..+.. -+.+..++..+..+|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33221 2223322 2357889999999888876542 13456788999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcc
Q 015765 373 VAEANELIGLMKKRFPKSGD 392 (401)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~ 392 (401)
+++|++.|++.++..+.++.
T Consensus 446 ~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 446 MQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp CC------------------
T ss_pred HHHHHHHHHHHHhcCCCCCc
Confidence 99999999999987554443
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.4e-14 Score=133.51 Aligned_cols=340 Identities=7% Similarity=0.025 Sum_probs=189.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHH
Q 015765 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVL 120 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 120 (401)
.+...+.. ...++.++|..+++.+... .|.+...|...+..+.+.|++++|..+|+.+.... | +...|...+..
T Consensus 15 ~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p-~~~lw~~~~~~ 88 (530)
T 2ooe_A 15 AWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--L-HIDLWKCYLSY 88 (530)
T ss_dssp HHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--C-CHHHHHHHHHH
T ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C-ChHHHHHHHHH
Confidence 34444443 4466777777777777654 44566677777777777777777777777776332 2 23344443321
Q ss_pred -HHhcCChHHHHH----HHHHHhh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHhchhh---------
Q 015765 121 -YGQANMIDHAMQ----TFEEMDK-YGLR-QSVDALNALLLGCIL---------SKNYEEVKRIFTEFPKV--------- 175 (401)
Q Consensus 121 -~~~~~~~~~a~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~--------- 175 (401)
....|+++.|.+ +|+...+ .|.. ++...|...+....+ .|+++.|..+|++..+.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 123344444333 4444332 1222 233444444443332 34455555555554321
Q ss_pred ------------------------------------------c-----CCCCC--------HHhHHHHHHHHHhc----C
Q 015765 176 ------------------------------------------Y-----GIEPN--------SETYNKVIKSFCES----G 196 (401)
Q Consensus 176 ------------------------------------------~-----~~~~~--------~~~~~~l~~~~~~~----~ 196 (401)
. .++|+ ...|...+...... +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 0 01111 01121111111110 1
Q ss_pred Ch----hHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc-------cCChH-------HHHHHHHHHHHcCCCCCchhHHHH
Q 015765 197 DS----SSVYSILAEMRRKSIRPNATDFGLLLAGFYK-------EHKYE-------DVGKVLQMMEKCGIASGVNVYNIR 258 (401)
Q Consensus 197 ~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l 258 (401)
+. +.+..+|++.... .+.+...|..+...+.+ .|+++ +|..++++..+.-.+.+...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 11 2344455555443 23345556666665554 57765 777777777652223456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHcc
Q 015765 259 IQSLCKLKRSEEAKALLDGMLSRGIKPN--LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF-LCQG 335 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~ 335 (401)
+..+.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|++++|.++|++..+.. +.+...|...+.. +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHc
Confidence 77777778888888888877775 333 2467777777777777888888887777642 1122233222222 2357
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765 336 GEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 336 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
|+.++|..+|++..+.. +.+...+..++..+.+.|+.++|..+|++..+..|.++
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 77888888887777653 34567777777777777888888888888777654443
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=1.1e-17 Score=146.63 Aligned_cols=253 Identities=12% Similarity=0.118 Sum_probs=114.8
Q ss_pred HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765 86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165 (401)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (401)
-+.|++++|.++++++ + . ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 14 ~~~~~ld~A~~fae~~---~-~---~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC---N-E---PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC---C-C---hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 3678899999999886 2 1 348999999999999999999999653 5777899999999999999999
Q ss_pred HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK 245 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (401)
+..++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 81 VKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 9988777543 5667788999999999999999998885 367789999999999999999999999976
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH
Q 015765 246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF 325 (401)
Q Consensus 246 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 325 (401)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence 36999999999999999999999988 2789999999999999999999665543 22344445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 015765 326 FMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLM 383 (401)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 383 (401)
..++..|.+.|.+++|..+++...... +-....|+-+..+|++- ++++..+.++..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~ 266 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 678999999999999999999988665 55677888888888764 455555555443
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.1e-15 Score=126.62 Aligned_cols=226 Identities=9% Similarity=0.033 Sum_probs=162.5
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CC----HH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR--QS----VD 147 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~ 147 (401)
....|..+...+...|++++|+..|++..... .+...+..+...|...|++++|...+++..+.... ++ ..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 45678899999999999999999999998554 44678999999999999999999999998775311 12 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 015765 148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGF 227 (401)
Q Consensus 148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 227 (401)
++..+...+...|++++|...|++..+. .|+. ..+.+.|++++|.+.++++.... +.+...+..+...+
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 8888888999999999999999998764 4553 34555677788888887776642 23445566666677
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHH
Q 015765 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 307 (401)
...|++++|...++++.+.. +.+..++..+..++...|++++|...+++..+.. +.+...|..+..++...|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777777777776653 3345566666666666666666666666666543 223555666666666666666666
Q ss_pred HHHHHHHh
Q 015765 308 KLFASMTN 315 (401)
Q Consensus 308 ~~~~~m~~ 315 (401)
+.+++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=2.6e-13 Score=126.57 Aligned_cols=342 Identities=9% Similarity=-0.005 Sum_probs=237.8
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHH-HhCCCchHHHH----HHHHhhhC-CCCCCchh
Q 015765 39 KEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKL-SQANHFNAISQ----LLEELKTR-PDLRQNER 112 (401)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~~~~~ 112 (401)
...+...+......++++.|..+|+.+.... |+...|...+... ...|+++.|.+ +|+..... +..+.+..
T Consensus 46 ~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~ 122 (530)
T 2ooe_A 46 GRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH
Confidence 3456677788888899999999999887652 3555666666433 34566666654 56655422 22233355
Q ss_pred HHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHH--------------------------------
Q 015765 113 FHVHSIVLYGQ---------ANMIDHAMQTFEEMDKYGLRQSVDALNA-------------------------------- 151 (401)
Q Consensus 113 ~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------------------------- 151 (401)
+|...+....+ .|+++.|..+|++.++.........|..
T Consensus 123 ~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~ 202 (530)
T 2ooe_A 123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAK 202 (530)
T ss_dssp HHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHH
Confidence 66666655443 5677777777777766211111122221
Q ss_pred ---------------------------------HHHHHHhc----CCH----HHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765 152 ---------------------------------LLLGCILS----KNY----EEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 152 ---------------------------------l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
.+...... ++. +.+..+|++..... +.+...|...+.
T Consensus 203 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~ 280 (530)
T 2ooe_A 203 EYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQ 280 (530)
T ss_dssp HHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 11111000 111 24455666665542 445667777777
Q ss_pred HHHh-------cCChh-------HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc--hh
Q 015765 191 SFCE-------SGDSS-------SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV--NV 254 (401)
Q Consensus 191 ~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 254 (401)
.+.+ .|+++ +|.++|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+. ..
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 358 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHH
Confidence 7775 69987 89999999986323446888999999999999999999999999985 4442 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC 333 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (401)
|..++..+.+.|++++|..+|++..+... .+...|...... +...|++++|.++|+..++.. +.+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 88899999999999999999999988632 223333332222 346899999999999988753 335788999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 015765 334 QGGEYETALKVCRASMAKGW-VP--HFSTMKSLVTGLASISKVAEANELIGLMKKRFPK 389 (401)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 389 (401)
+.|+.++|..+|++....+. .| ....|...+......|+.+.+..+.+++.+.+|.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999999998742 22 2447888888888899999999999999988774
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=5.9e-15 Score=123.57 Aligned_cols=211 Identities=14% Similarity=0.048 Sum_probs=162.9
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS 261 (401)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (401)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3456677777778888888888888877653 3456777777888888888888888888877764 3356777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015765 262 LCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET 340 (401)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (401)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887733334 45677778888888889999998888887753 3356778888888889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 341 ALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
|..+++++.+.. +.+...+..+...+.+.|++++|.++++++.+..|.+...+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999998887754 4567778888888888999999999999998888777665543
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=1.7e-15 Score=123.83 Aligned_cols=200 Identities=9% Similarity=-0.004 Sum_probs=122.4
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015765 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR 258 (401)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (401)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3444555555556666666666666666655542 3345555555566666666666666666665543 2344555555
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015765 259 IQSLCKL-----------KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM 327 (401)
Q Consensus 259 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 327 (401)
..++... |++++|...|++..+.... +...+..+...+...|++++|.+.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 5666666 7888888888877775322 46677777777888888888888888877765 66777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765 328 FTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
+..+|...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888877764 4466777777888888888888888777654
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=2.3e-15 Score=127.65 Aligned_cols=242 Identities=8% Similarity=-0.039 Sum_probs=130.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHH
Q 015765 150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN--ATDFGLLLAGF 227 (401)
Q Consensus 150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~ 227 (401)
......+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.+..++ ...|..+...+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334445555555555555555554331 22233555555555555666666665555554221111 22355555566
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHH
Q 015765 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAK 307 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 307 (401)
...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655543 2344556666666666666666666666655542 223445555552222334666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCHHHHH
Q 015765 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGE---YETALKVCRASMAKG-WVPH------FSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 377 (401)
+.++++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...+..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666542 2224455555555555555 555666666555431 1122 145666666777777777777
Q ss_pred HHHHHHHhcCCCCcccchh
Q 015765 378 ELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ 396 (401)
+.+++..+..|.+...+..
T Consensus 242 ~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHH
Confidence 7777777777666655443
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.71 E-value=5.7e-14 Score=119.18 Aligned_cols=225 Identities=11% Similarity=-0.036 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNK 187 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 187 (401)
..+..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|...|++..+. -+...+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~ 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHHHHHH
Confidence 34444445555555555555555555542 233444444445555 55555555555554332 13444444
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 015765 188 VIKSFCE----SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC 263 (401)
Q Consensus 188 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 263 (401)
+...|.. .+++++|.+.|++..+.+ +...+ ..+...|.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~-----------------------------------~~lg~~~~ 121 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGC-----------------------------------ASLGGIYH 121 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH-----------------------------------HHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHH-----------------------------------HHHHHHHH
Confidence 4444444 455555555555444432 33444 44444444
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-
Q 015765 264 K----LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ- 334 (401)
Q Consensus 264 ~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~- 334 (401)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 4 455555555555544443 33344444444444 455555555555555432 23344444555555
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhcCCCC
Q 015765 335 ---GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 335 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 390 (401)
.+++++|.+.+++..+.+ +...+..+...|.+ .+++++|.+.+++..+..|++
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 555555555555555443 13444455555555 555555555555555554433
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=3.9e-15 Score=121.71 Aligned_cols=193 Identities=15% Similarity=-0.002 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 192 (401)
.+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+...+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 34444444444444444444444444433 3334444444444444444444444444444331 22233444444444
Q ss_pred Hhc-----------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765 193 CES-----------GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS 261 (401)
Q Consensus 193 ~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (401)
.+. |++++|...|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 444 44444444444444331 2233344444444444444444444444444443 334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765 262 LCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312 (401)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 312 (401)
+...|++++|...|++..+... .+...+..+...+...|++++|.+.+++
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444444444444321 1334444444444444444444444443
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.70 E-value=1.4e-14 Score=118.81 Aligned_cols=211 Identities=11% Similarity=0.039 Sum_probs=140.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 015765 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQS 261 (401)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 261 (401)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455556666666666666666666665542 3345566666666666677777777776666553 3345566667777
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015765 262 LCKL-KRSEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339 (401)
Q Consensus 262 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (401)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777766322232 4666777777777778888887777777643 234666777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (401)
+|..+++++.+.....+...+..+...+...|+.+.|..+++.+.+..|.+...+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888887776542146666777777777788888888888888777766655443
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=1.8e-15 Score=128.47 Aligned_cols=221 Identities=12% Similarity=0.019 Sum_probs=122.4
Q ss_pred CCCchHHHHHHHHhhhCCC--CCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765 88 ANHFNAISQLLEELKTRPD--LRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165 (401)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (401)
.|++++|+..++++..... .+.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566667776666663311 12234556666666666777777777777666654 34566666666666667777777
Q ss_pred HHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765 166 KRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK 245 (401)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (401)
...|++..+.. +.+..++..+...+.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...++....
T Consensus 97 ~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 77776665542 334556666666666666666666666666553 23333333333444555666666666655554
Q ss_pred cCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765 246 CGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP---NLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 246 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
.. +++...+ .++..+...++.++|...+++........ +...+..+...|...|++++|...|++..+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 42 2222222 24445555555566666665554431110 134455555555555555555555555554
No 43
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.7e-13 Score=123.53 Aligned_cols=309 Identities=11% Similarity=-0.032 Sum_probs=221.1
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhC-------CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-----C
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTR-------PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY-----G 141 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~ 141 (401)
....|+.+...+...|++++|++.|++.... ...+....+|..+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568999999999999999999999887521 112333567889999999999999999999887652 1
Q ss_pred --CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHhchhhcCCCCC-HHhHHHHHHH---HHhcCChhHHHHHHHHHHhCCC
Q 015765 142 --LRQSVDALNALLLGCIL--SKNYEEVKRIFTEFPKVYGIEPN-SETYNKVIKS---FCESGDSSSVYSILAEMRRKSI 213 (401)
Q Consensus 142 --~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 213 (401)
......++..+..++.. .+++++|++.|++..+. .|+ ...+..+... +...++.++|++.+++..+..
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 11235666666555554 45799999999999765 444 4444444444 345678889999999887753
Q ss_pred CCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 015765 214 RPNATDFGLLLAGFYK----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDT 289 (401)
Q Consensus 214 ~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 289 (401)
+.+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.... +..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3355666655554443 467889999999988874 456778899999999999999999999999886422 4666
Q ss_pred HHHHHHHHhcC-------------------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765 290 YKHLIHGFGKE-------------------GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 290 ~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
+..+..+|... +..+.|...++...+.. +.+...+..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 76666555321 23567778888777653 34566788899999999999999999999998
Q ss_pred CCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHHHhcCCC
Q 015765 351 KGWVPHFS--TMKSLVT-GLASISKVAEANELIGLMKKRFPK 389 (401)
Q Consensus 351 ~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~ 389 (401)
....+... .+..+.. .+...|++++|+..+++..+..|.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 75333221 2233332 235789999999999888766543
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=3e-15 Score=124.56 Aligned_cols=209 Identities=16% Similarity=0.061 Sum_probs=120.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 015765 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSL 262 (401)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 262 (401)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344555555556666666666666665532 3345555566666666666666666666665543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765 263 CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL 342 (401)
Q Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (401)
...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666666543 2245566666666667777777777777666542 234556666677777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+.++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+..|.+...+..
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 7777766653 3456667777777777777777777777777777666655543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=9.5e-15 Score=123.79 Aligned_cols=231 Identities=10% Similarity=0.020 Sum_probs=104.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC--HHhHHHHHHHHHh
Q 015765 117 SIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN--SETYNKVIKSFCE 194 (401)
Q Consensus 117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 194 (401)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..+. ...++ ..+|..+...+..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHH
Confidence 3344444444444444444444432 222334444444444444444444444444331 10111 1124444444445
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015765 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL 274 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 274 (401)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444431 2233444455555555555555555555444431 22333343343122223355555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHccCCHHHHHHH
Q 015765 275 LDGMLSRGIKPNLDTYKHLIHGFGKEGN---LEGAKKLFASMTNGG-CEPD------SYCFFMFTYFLCQGGEYETALKV 344 (401)
Q Consensus 275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~a~~~ 344 (401)
|++..+... .+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++++|.+.
T Consensus 165 ~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555554421 124444444444444444 555555555544321 1122 13455566666666666666666
Q ss_pred HHHHHHCC
Q 015765 345 CRASMAKG 352 (401)
Q Consensus 345 ~~~~~~~~ 352 (401)
++++.+..
T Consensus 244 ~~~al~~~ 251 (272)
T 3u4t_A 244 WKNILALD 251 (272)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 66666553
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.68 E-value=6.2e-14 Score=114.95 Aligned_cols=199 Identities=11% Similarity=-0.047 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015765 112 RFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (401)
..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 344444444445555555555555444432 2334444444455555555555555555444321 2233444444444
Q ss_pred HHhc-CChhHHHHHHHHHHhCCCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015765 192 FCES-GDSSSVYSILAEMRRKSIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE 269 (401)
Q Consensus 192 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 269 (401)
+... |++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555544421111 13344444444445555555555554444432 222344444444455555555
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
+|...++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 555555544443211233444444444444455555544444444
No 47
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.68 E-value=3.1e-13 Score=132.38 Aligned_cols=307 Identities=15% Similarity=0.156 Sum_probs=172.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCC-CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHH
Q 015765 41 KKRATIARLKSESNPFRILDICCGASLAPE-SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIV 119 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 119 (401)
......+.+...+.+.+|+++++.+...+. +.-+...-+.++.+..+. +..+..++.+.+. ... ...+..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~~d-------~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-NYD-------APDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-hcc-------HHHHHH
Confidence 344556777799999999999998875543 223344455555555444 4444555544433 111 222455
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765 120 LYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
.+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|+++
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHH
Confidence 5556666666666666642 11122222222 4455666666655441 2445556666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
+|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 666666442 245555556666666666666666665555443 22222333555555555555433221
Q ss_pred HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC--------
Q 015765 280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-------- 351 (401)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------- 351 (401)
. .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++....
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 223444445555555555555555555553 24555555555555555555555433211
Q ss_pred ----------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccch
Q 015765 352 ----------------GWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 352 ----------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (401)
++..++..+..++..|.+.|.+++|+.+++......+.+...|+
T Consensus 1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 12345667788899999999999999999999877766666654
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=4.8e-14 Score=118.00 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=132.5
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015765 75 RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL 154 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 154 (401)
...|..+...+...|++++|.+.|+++.... +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 5677778888888888888888888877432 3335677777777888888888888888777664 446667777777
Q ss_pred HHHhcCCHHHHHHHHHhchhhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765 155 GCILSKNYEEVKRIFTEFPKVYGIEP-NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (401)
.+...|++++|.+.++++.+ .+..| +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 77777777777777777754 11233 34456666666777777777777777766542 23455566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666665542 234445555556666666666666666666554
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=3e-13 Score=114.68 Aligned_cols=224 Identities=11% Similarity=-0.027 Sum_probs=186.5
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQ----ANMIDHAMQTFEEMDKYGLRQSVDAL 149 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 149 (401)
+..++..+...+...|++++|++.|++... + .+...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-L---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 567888889999999999999999999886 2 235678888889999 999999999999999875 77888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHhHH
Q 015765 150 NALLLGCIL----SKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----SGDSSSVYSILAEMRRKSIRPNATDFG 221 (401)
Q Consensus 150 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (401)
..+...|.. .+++++|+..|++..+. .+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 889999999 99999999999999764 377888899999999 999999999999998875 566777
Q ss_pred HHHHHHHc----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 015765 222 LLLAGFYK----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK----LKRSEEAKALLDGMLSRGIKPNLDTYKHL 293 (401)
Q Consensus 222 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 293 (401)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77777877 888999999998888764 45667777788888 888888888888888764 35667777
Q ss_pred HHHHhc----CCChHHHHHHHHHHHhCC
Q 015765 294 IHGFGK----EGNLEGAKKLFASMTNGG 317 (401)
Q Consensus 294 i~~~~~----~~~~~~a~~~~~~m~~~~ 317 (401)
...|.. .+++++|.+.|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777 788888888888877654
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.67 E-value=6.7e-14 Score=123.78 Aligned_cols=248 Identities=9% Similarity=0.007 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhchhhcCCCCCHHhHHHHH
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN-YEEVKRIFTEFPKVYGIEPNSETYNKVI 189 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 189 (401)
...+..+...+...|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|+..|++..+.. +-+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4455666666666777777777777776654 4456666777777777775 777777777776542 33455667777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHh-cCCH
Q 015765 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCK-LKRS 268 (401)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~ 268 (401)
.++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 77777777777777777776653 3356667777777777777777777777776664 3355666777777666 4544
Q ss_pred HHH-----HHHHHHHHHCCCCcCHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-----
Q 015765 269 EEA-----KALLDGMLSRGIKPNLDTYKHLIHGFGKEG--NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG----- 336 (401)
Q Consensus 269 ~~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----- 336 (401)
++| +..|++....... +...|+.+...+...| ++++|.+.+.++ +. ...+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 555 4666666665322 4566777777776666 567777777776 32 2334556667777776653
Q ss_pred ----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 015765 337 ----EYETALKVCRAS-MAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 337 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 367 (401)
..++|.++++++ .+.+ +.....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777777 4432 22334454444444
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=8.1e-15 Score=124.35 Aligned_cols=247 Identities=8% Similarity=0.007 Sum_probs=192.9
Q ss_pred hcCChHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765 123 QANMIDHAMQTFEEMDKYGL---RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
..|++++|+..|+++.+... +.+..++..+...+...|++++|...|++..+.. +.+..++..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 45889999999999988632 1246778888999999999999999999998753 456788999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765 200 SVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
+|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998863 4467889999999999999999999999998864 455555556666677899999999998877
Q ss_pred HCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015765 280 SRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP---DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356 (401)
Q Consensus 280 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 356 (401)
... .++...+. ++..+...++.++|.+.+....+..... +...+..+...|...|++++|...++++.+.. |+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 753 23434443 6777788888999999999887642111 14678889999999999999999999998764 42
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Q 015765 357 FSTMKSLVTGLASISKVAEANELI 380 (401)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~a~~~~ 380 (401)
. +.....++...|++++|++-+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 233355677788888888765
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=2e-14 Score=127.18 Aligned_cols=245 Identities=10% Similarity=0.022 Sum_probs=205.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015765 145 SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD-SSSVYSILAEMRRKSIRPNATDFGLL 223 (401)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (401)
+...|..+...+...|++++|++.+++..+.. +-+..+|+.+...+...|+ +++|+..|++..... +-+...|..+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 35667778888999999999999999998763 4457789999999999996 999999999998864 4478899999
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc-CCC
Q 015765 224 LAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK-EGN 302 (401)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~ 302 (401)
..++...|++++|+..|+++.+.. +.+...|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.. .|.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999875 457889999999999999999999999999997543 68899999999988 666
Q ss_pred hHHH-----HHHHHHHHhCCCCCCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----
Q 015765 303 LEGA-----KKLFASMTNGGCEPDSYCFFMFTYFLCQGG--EYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS---- 371 (401)
Q Consensus 303 ~~~a-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 371 (401)
.++| ++.+++.++.. +-+...|..+...+...| ++++|.+.+.++ +. -+.+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 58888888753 335678888888888888 689999999988 33 3556788889999998864
Q ss_pred -----CHHHHHHHHHHH-HhcCCCCcccchhc
Q 015765 372 -----KVAEANELIGLM-KKRFPKSGDMWNAA 397 (401)
Q Consensus 372 -----~~~~a~~~~~~~-~~~~~~~~~~~~~l 397 (401)
.+++|+++++++ .+..|.....|..+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 369999999999 78788777777643
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=2.4e-14 Score=119.06 Aligned_cols=201 Identities=8% Similarity=0.066 Sum_probs=94.7
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
....|..+...+...|++++|...|+++... .+.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 4445566666666666666666666666532 12334555556666666666666666666665543 33455555556
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (401)
..+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654432 3344455555555555555555555555554432 22344444455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
++|...++++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555555544432 223344444444444555555555555444443
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.64 E-value=7.5e-15 Score=131.91 Aligned_cols=301 Identities=10% Similarity=-0.003 Sum_probs=216.2
Q ss_pred ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CC
Q 015765 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GLR-QS 145 (401)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~ 145 (401)
.....+......+...|++++|+..|+++.......+. ..++..+...|...|++++|...+++..+. +-. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34556777888889999999999999988843211111 356778888899999999999998886542 111 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCC--------------------hhHH
Q 015765 146 VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGD--------------------SSSV 201 (401)
Q Consensus 146 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a 201 (401)
..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 556777888889999999999998887643211122 3467788888889999 8999
Q ss_pred HHHHHHHHhC----CCCC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----chhHHHHHHHHHhcCCHHHH
Q 015765 202 YSILAEMRRK----SIRP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA-SG----VNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 202 ~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a 271 (401)
.+.+++.... +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9888876442 1111 2346778888899999999999999887653111 11 23788888999999999999
Q ss_pred HHHHHHHHHC----CCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHccCCHHHH
Q 015765 272 KALLDGMLSR----GIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEP-DSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 272 ~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a 341 (401)
...+++..+. +..+. ..++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987653 11111 467788889999999999999999887753 1111 145777888899999999999
Q ss_pred HHHHHHHHHC----CC-CCCHHHHHHHHHHHHccCCH
Q 015765 342 LKVCRASMAK----GW-VPHFSTMKSLVTGLASISKV 373 (401)
Q Consensus 342 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 373 (401)
.+.+++..+. +. .....++..+...+...|+.
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999987654 21 12245566777777776654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.63 E-value=1.7e-14 Score=129.98 Aligned_cols=172 Identities=9% Similarity=-0.020 Sum_probs=100.8
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----G-LRQSV 146 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 146 (401)
....+..+...+...|++++|+..|+++.......+. ...+..+...|...|++++|...+++..+. + .+...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4455666777788888888888888887743211110 146677777788888888888888876552 1 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhhcC---C-CCCHHhHHHHHHHHHhcCC-----------------hhHHHHHH
Q 015765 147 DALNALLLGCILSKNYEEVKRIFTEFPKVYG---I-EPNSETYNKVIKSFCESGD-----------------SSSVYSIL 205 (401)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 205 (401)
.++..+...|...|++++|...+++..+... - +....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5566677777778888888888777654311 0 1123355666666666777 66666666
Q ss_pred HHHHhC----CC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 015765 206 AEMRRK----SI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEK 245 (401)
Q Consensus 206 ~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 245 (401)
++..+. +. .....++..+...+...|++++|...+++..+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 554321 10 00112344444455555555555555554443
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=2.1e-12 Score=111.51 Aligned_cols=217 Identities=12% Similarity=0.022 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhchhhcCCCC-CHHhHHHHHHHH
Q 015765 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCIL-------SKNY-------EEVKRIFTEFPKVYGIEP-NSETYNKVIKSF 192 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 192 (401)
++|..+|++..+.. +.+...|..++..+.. .|++ ++|..+|++..+. +.| +...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 45555666655543 3455555555555442 3443 5555555555431 123 233455555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-HH-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH-hcCCHH
Q 015765 193 CESGDSSSVYSILAEMRRKSIRPN-AT-DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC-KLKRSE 269 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~ 269 (401)
.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555543 222 22 45555555555555555555555555442 122233322222211 135555
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC-CCC--CHhhHHHHHHHHHccCCHHHHHHHHH
Q 015765 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG-CEP--DSYCFFMFTYFLCQGGEYETALKVCR 346 (401)
Q Consensus 270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (401)
+|..+|++..+... -+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555544321 134455555555555555555555555555431 222 23344555555555555555555555
Q ss_pred HHHHC
Q 015765 347 ASMAK 351 (401)
Q Consensus 347 ~~~~~ 351 (401)
++.+.
T Consensus 266 ~a~~~ 270 (308)
T 2ond_A 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=1.2e-13 Score=109.64 Aligned_cols=180 Identities=9% Similarity=0.018 Sum_probs=127.1
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015765 216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295 (401)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 295 (401)
+...|..+...+...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45566777777777777777777777776654 335666777777777777777777777777665322 4566666667
Q ss_pred HHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 015765 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE 375 (401)
Q Consensus 296 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (401)
.+...++++.|.+.+.+..+.. +.+...+..+...+.+.|++++|++.+++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 7777777888877777776643 3345667777777888888888888888777764 4567777888888888888888
Q ss_pred HHHHHHHHHhcCCCCcccchhcCC
Q 015765 376 ANELIGLMKKRFPKSGDMWNAALP 399 (401)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~ll~ 399 (401)
|.+.|++..+..|.+...+-+||.
T Consensus 160 A~~~~~~al~~~p~~a~~~lali~ 183 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKAKYELALVP 183 (184)
T ss_dssp HHHHHHHHHHTTHHHHHHCSCCSC
T ss_pred HHHHHHHHHhCCccCHHHHHHhhC
Confidence 888888888777666554444543
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.60 E-value=4.8e-14 Score=127.05 Aligned_cols=92 Identities=14% Similarity=-0.054 Sum_probs=39.5
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCcc--HhHHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHHHH
Q 015765 47 ARLKSESNPFRILDICCGASLAPESPLD--RMAFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSIVL 120 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~ 120 (401)
..+...|+++.|+..++.+.......+. ...|..+...+...|++++|...+++... .++.+.....+..+...
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3444445555555555444322111110 12344444555555555555555554431 11112223344444445
Q ss_pred HHhcCChHHHHHHHHHHh
Q 015765 121 YGQANMIDHAMQTFEEMD 138 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~ 138 (401)
|...|++++|...+++..
T Consensus 136 ~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHL 153 (411)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=4.3e-14 Score=123.28 Aligned_cols=280 Identities=11% Similarity=0.013 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CCCHHHH
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN--ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GL-RQSVDAL 149 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 149 (401)
.+......+...|++++|+..|+++.......+. ...+..+...|...|++++|.+.+++..+. +. +....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556666677777777777766632111110 245556666666777777777776665432 10 1123445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCC--------------------hhHHHHHH
Q 015765 150 NALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGD--------------------SSSVYSIL 205 (401)
Q Consensus 150 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 205 (401)
..+...+...|++++|...+++..+...-.++ ..++..+...+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 55666666666666666666665432111111 2245555555555555 55555555
Q ss_pred HHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 015765 206 AEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI-ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR--- 281 (401)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 281 (401)
++.... . ...+. .....++..+...+...|++++|...+++..+.
T Consensus 167 ~~a~~~----------------------------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 167 EENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHH----------------------------H---HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------------------------H---HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 443221 0 00000 001223444445555555555555555544332
Q ss_pred -CCC-cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC--
Q 015765 282 -GIK-PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKG-- 352 (401)
Q Consensus 282 -~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-- 352 (401)
+.. ....++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...++++.+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000 01224555555566666666666666555432 1000 13455566666666777777777666655431
Q ss_pred --C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765 353 --W-VPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 353 --~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
- .....++..+...|.+.|++++|.+.+++..+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 0 1113356667777777777777777777776653
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=5.3e-14 Score=122.66 Aligned_cols=238 Identities=11% Similarity=-0.001 Sum_probs=145.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCC-CCHHhHHHH
Q 015765 117 SIVLYGQANMIDHAMQTFEEMDKYGLRQS----VDALNALLLGCILSKNYEEVKRIFTEFPKVY---GIE-PNSETYNKV 188 (401)
Q Consensus 117 li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l 188 (401)
....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++..+.. +.. ....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3445566677777777777666653 222 2455556666666666666666666543221 101 112334445
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015765 189 IKSFCESGDSSSVYSILAEMRRKSI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 267 (401)
...+...|++++|.+.+++..+... .++. .....++..+...+...|+
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHHcCc
Confidence 5555555555555555555432100 0000 0002244455555555555
Q ss_pred --------------------HHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CC
Q 015765 268 --------------------SEEAKALLDGMLSR----GIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GC 318 (401)
Q Consensus 268 --------------------~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~ 318 (401)
+++|...+++.... +..+ ...++..+...+...|++++|.+.+++..+. +.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 66666666554331 1111 2457788888999999999999999987743 11
Q ss_pred C-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765 319 E-PDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW-VPH----FSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 319 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
. ....++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|.+.+++..+.
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 1234788888999999999999999998775411 111 567888999999999999999999998765
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.1e-13 Score=124.24 Aligned_cols=275 Identities=10% Similarity=-0.023 Sum_probs=209.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCCC-CH
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS----VDALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEP-NS 182 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~ 182 (401)
...+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+++..+.. +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4455667788899999999999999998875 334 3578888899999999999999998865431 1112 24
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCC--------------------hHHHH
Q 015765 183 ETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPN----ATDFGLLLAGFYKEHK--------------------YEDVG 237 (401)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~ 237 (401)
.++..+...+...|++++|...+++..+... ..+ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 5678888999999999999999998765310 012 3477888889999999 99999
Q ss_pred HHHHHHHHc----CCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHhcCCChHHHH
Q 015765 238 KVLQMMEKC----GIA-SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGI-KPN----LDTYKHLIHGFGKEGNLEGAK 307 (401)
Q Consensus 238 ~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~ 307 (401)
..+++..+. +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998877542 111 1235678888999999999999999998875310 112 347888899999999999999
Q ss_pred HHHHHHHhC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHH
Q 015765 308 KLFASMTNG----GCEP-DSYCFFMFTYFLCQGGEYETALKVCRASMAKGW-VPH----FSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 308 ~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~ 377 (401)
+.+++..+. +..+ ...++..+...|...|++++|.+.+++..+... ..+ ..++..+...|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987743 1111 145778888999999999999999998776411 111 557888999999999999999
Q ss_pred HHHHHHHhc
Q 015765 378 ELIGLMKKR 386 (401)
Q Consensus 378 ~~~~~~~~~ 386 (401)
+.+++..+.
T Consensus 328 ~~~~~al~~ 336 (406)
T 3sf4_A 328 HFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=4.5e-13 Score=119.55 Aligned_cols=298 Identities=10% Similarity=0.006 Sum_probs=202.3
Q ss_pred HHhCCCchHHHHHHHHhhhC-CCCCCc--hhHHHHHHHH--HHhcCChHHHH-----------HHHHHHhhCCCCCCHHH
Q 015765 85 LSQANHFNAISQLLEELKTR-PDLRQN--ERFHVHSIVL--YGQANMIDHAM-----------QTFEEMDKYGLRQSVDA 148 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 148 (401)
+.+.+++++|..+++++... +....+ ...|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45788899999988887622 222122 2222333221 12223344444 5566554321 11111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CC--
Q 015765 149 ------LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEMRRKS--IR-- 214 (401)
Q Consensus 149 ------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-- 214 (401)
+......+...|++++|...|++..+...-.++ ..++..+...|...|+++.|.+.+++..+.- ..
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222456677889999999999988643221233 3567888889999999999999998876531 11
Q ss_pred --CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-C----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 015765 215 --PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA-S----GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GI 283 (401)
Q Consensus 215 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 283 (401)
....++..+...|...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11346778888999999999999999887653111 1 1247888899999999999999999988772 22
Q ss_pred -CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCC
Q 015765 284 -KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPDSYCFFMFTYFLCQGGE---YETALKVCRASMAKGWVP 355 (401)
Q Consensus 284 -~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~ 355 (401)
.....++..+...|...|++++|.+.+++..+. +-......+..+...+...|+ +++|..++++.. ..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence 234577888999999999999999999987753 111122335667788888998 777777777551 1122
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765 356 HFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
....+..+...|...|++++|.+.+++..+.
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456778899999999999999999998765
No 63
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.58 E-value=1.1e-11 Score=121.79 Aligned_cols=289 Identities=12% Similarity=0.095 Sum_probs=138.4
Q ss_pred HHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhc
Q 015765 45 TIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA 124 (401)
Q Consensus 45 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 124 (401)
....+...+.+++|..+|+.... .....+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhC
Confidence 34455556666666666655421 0111122211 4445555555555431 123455555555555
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015765 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI 204 (401)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 204 (401)
|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+. .++....+.++.+|++.++++....+
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHH
Confidence 5555555555332 24444555555555555555555555444322 22222222344455555444432222
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 015765 205 LAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR--- 281 (401)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 281 (401)
+ + .++...|..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++....
T Consensus 1190 I----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1190 I----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred H----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 1 1 123334444445555555555555555442 13444444555555555544444433100
Q ss_pred ---------------------CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc--CCH
Q 015765 282 ---------------------GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG--GEY 338 (401)
Q Consensus 282 ---------------------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~ 338 (401)
++..+...+..++..|.+.|.+++|+.+++..+... .-....|+-+..+|++. ++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 012244455566777777777777777776665432 22333455555555443 233
Q ss_pred HHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHH
Q 015765 339 ETALKVCRASMAKGWVP------HFSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 339 ~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~ 377 (401)
.++.++|..-. ++++ +...|..++..|.+.|+++.|.
T Consensus 1333 mEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1333 REHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33444433211 2222 4556777888888888888777
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=7.6e-14 Score=120.49 Aligned_cols=140 Identities=12% Similarity=0.073 Sum_probs=82.0
Q ss_pred CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC------CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC---
Q 015765 70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTR------PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY--- 140 (401)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 140 (401)
+.+.+..++..+...+...|++++|..+++++... +..+.....+..+...|...|++++|...+++..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888888888877631 123334556667777777777777777777776543
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc-----CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765 141 ---GL-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY-----GIEP-NSETYNKVIKSFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 141 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (401)
+- +....++..+...|...|++++|...+++..+.. +..| ....+..+...+...|++++|.+++++..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 1224455556666666666666666666654321 1111 12234444445555555555555555443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.54 E-value=1.5e-11 Score=106.12 Aligned_cols=217 Identities=13% Similarity=0.088 Sum_probs=121.4
Q ss_pred hHHHHHHHHhhhCCCCCCchhHHHHHHHHHH-------hcCCh-------HHHHHHHHHHhh-CCCCCCHHHHHHHHHHH
Q 015765 92 NAISQLLEELKTRPDLRQNERFHVHSIVLYG-------QANMI-------DHAMQTFEEMDK-YGLRQSVDALNALLLGC 156 (401)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 156 (401)
++|..+|++..... |.+...|...+..+. +.|++ ++|..+|++..+ .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45566666665321 233445555555544 23554 666666666665 22 33455666666666
Q ss_pred HhcCCHHHHHHHHHhchhhcCCCCC-HH-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHH-ccCCh
Q 015765 157 ILSKNYEEVKRIFTEFPKVYGIEPN-SE-TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFY-KEHKY 233 (401)
Q Consensus 157 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~ 233 (401)
.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCH
Confidence 6666666666666666532 343 22 56666666666666666666666666542 223333332222211 24666
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHhcCCChHHHHHHH
Q 015765 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRG-IKP--NLDTYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~~~~~~a~~~~ 310 (401)
++|.++|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665542 2345566666666666666666666666666642 233 3455666666666666666666666
Q ss_pred HHHHhC
Q 015765 311 ASMTNG 316 (401)
Q Consensus 311 ~~m~~~ 316 (401)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=4e-12 Score=100.77 Aligned_cols=166 Identities=10% Similarity=-0.012 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
..+|..+...|...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHHH
Confidence 3455556666666666666666666655554 3355555556666666666666666666554432 233444555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE 270 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 270 (401)
.+...++++.+.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5555666666666665555432 3344555555555566666666666665555543 2344555555555666666666
Q ss_pred HHHHHHHHHHC
Q 015765 271 AKALLDGMLSR 281 (401)
Q Consensus 271 a~~~~~~~~~~ 281 (401)
|...|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666555543
No 67
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.52 E-value=6.9e-12 Score=111.62 Aligned_cols=311 Identities=9% Similarity=-0.058 Sum_probs=209.3
Q ss_pred CccHhHHHHHHHHH--HhCCCchHHHHHHHHhhh-CCCCCCc--hhHHHHHHHH--HHhcCChHHHH---------HHHH
Q 015765 72 PLDRMAFSIAVSKL--SQANHFNAISQLLEELKT-RPDLRQN--ERFHVHSIVL--YGQANMIDHAM---------QTFE 135 (401)
Q Consensus 72 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~--~~~~~~li~~--~~~~~~~~~a~---------~~~~ 135 (401)
.|+..+-..+-+.+ ...+++++|.++++++.. ......+ ...|..++.. ....+.++.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555666666666 789999999999998762 1121122 2333333332 11112222222 5555
Q ss_pred HHhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHH
Q 015765 136 EMDKYGLRQSV----DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAE 207 (401)
Q Consensus 136 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 207 (401)
.+.....+.+. ..+......+...|++++|+..|++..+.....++ ..++..+...|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 12233445567899999999999988643222233 34678888999999999999999988
Q ss_pred HHhCC--C---CC-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCchhHHHHHHHHHhcCCHHHHHHHHH
Q 015765 208 MRRKS--I---RP-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIA-SGVNVYNIRIQSLCKLKRSEEAKALLD 276 (401)
Q Consensus 208 ~~~~~--~---~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~ 276 (401)
..+.. . .+ ...++..+...|...|++++|...+++..+. +-. ....++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76531 1 11 2456778889999999999999999887653 111 123567888899999999999999999
Q ss_pred HHHH-----CCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHccCC---HHHHHHH
Q 015765 277 GMLS-----RGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG----CEPDSYCFFMFTYFLCQGGE---YETALKV 344 (401)
Q Consensus 277 ~~~~-----~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~ 344 (401)
+..+ .... ...++..+...|.+.|++++|.+.+++..+.. -......+..+...+...|+ +++|..+
T Consensus 247 ~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9887 4322 36788889999999999999999999988642 11223445666667778888 7777777
Q ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765 345 CRASMAKGW-VPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 345 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
+++ .+. +.....+..+...|...|++++|.+.+++..+.
T Consensus 326 ~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 775 222 223456678899999999999999999988654
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=2e-12 Score=115.38 Aligned_cols=300 Identities=10% Similarity=-0.012 Sum_probs=206.9
Q ss_pred HhcCCChhHHHHHhhhccCCC-C--CCccHhHHHHHHHHH--HhCCCchHHH-----------HHHHHhhhCCCCCCc--
Q 015765 49 LKSESNPFRILDICCGASLAP-E--SPLDRMAFSIAVSKL--SQANHFNAIS-----------QLLEELKTRPDLRQN-- 110 (401)
Q Consensus 49 ~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 110 (401)
.-..++.+.|..+++.+...- . ..++...|..++..- .-.+.++.+. +.++.+...+....+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 344677888988887764221 1 223444444444322 1223333444 666666532211110
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---
Q 015765 111 -ERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GLRQ-SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN--- 181 (401)
Q Consensus 111 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 181 (401)
..++......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+++..+...-.++
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111222556678999999999999998763 1111 3467888899999999999999999988654322222
Q ss_pred --HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHc----CC-C
Q 015765 182 --SETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPN----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GI-A 249 (401)
Q Consensus 182 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~ 249 (401)
..+++.+...|...|++++|.+.+++..+... ..+ ..++..+...|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 35688889999999999999999998765311 111 247888999999999999999999988762 22 3
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhCCCCCC-
Q 015765 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPNLDTYKHLIHGFGKEGN---LEGAKKLFASMTNGGCEPD- 321 (401)
Q Consensus 250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~- 321 (401)
....++..+..++.+.|++++|...+++..+. +-......+..+...|...|+ +++|..++++. +..|+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 34567888999999999999999999987654 111123346778888889999 77777777665 22332
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765 322 SYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
...+..+...|...|++++|...+++..+.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 446778889999999999999999987764
No 69
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=2.4e-11 Score=107.89 Aligned_cols=305 Identities=6% Similarity=-0.043 Sum_probs=204.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH----HH
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQN---ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL-RQSV----DA 148 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~ 148 (401)
.+......+...|++++|...+++.......... ...+..+...+...|++++|.+.+++..+... ..+. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3444556677889999999999987744321110 12455666778889999999999988765210 1122 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhc---CCC--CC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHH
Q 015765 149 LNALLLGCILSKNYEEVKRIFTEFPKVY---GIE--PN-SETYNKVIKSFCESGDSSSVYSILAEMRRKSIR--P--NAT 218 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~ 218 (401)
+..+...+...|++++|...+++..+.. +.. |. ...+..+...+...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5667778889999999999998886542 211 22 345666778888999999999999988654221 1 234
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHH
Q 015765 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV-NVYN-----IRIQSLCKLKRSEEAKALLDGMLSRGIKP---NLDT 289 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~ 289 (401)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5677788888999999999999888654212211 1222 23344778899999999998877643221 1335
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 015765 290 YKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPDS-YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLV 364 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 364 (401)
+..+...+...|++++|.+.+++.... |..++. ..+..+..++...|+.++|...+++.....- . .-.+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~--~----~g~~ 329 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN--R----TGFI 329 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----HCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc--c----ccHH
Confidence 667778888899999999998887643 222222 2566667778889999999999998886521 1 1123
Q ss_pred HHHHccCCHHHHHHHHHHHHhcCCC
Q 015765 365 TGLASISKVAEANELIGLMKKRFPK 389 (401)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~~~~~~~~ 389 (401)
..+...| +....+++.+.+..|.
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHHHcc--HHHHHHHHHHHhCCCC
Confidence 4455555 6677788888776554
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.50 E-value=1.4e-12 Score=119.51 Aligned_cols=214 Identities=14% Similarity=0.025 Sum_probs=155.8
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015765 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY-EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI 204 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 204 (401)
.++++++.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+..+|..+...|.+.|++++|.+.
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3566666676665543 44677777777888888888 88888888876652 33466777888888888888888888
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHcc---------CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc--------CC
Q 015765 205 LAEMRRKSIRPNATDFGLLLAGFYKE---------HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL--------KR 267 (401)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 267 (401)
|++..+. .|+...+..+...+... |++++|...+++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8887765 35567777777777777 88888888888887764 34567777777888777 78
Q ss_pred HHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 015765 268 SEEAKALLDGMLSRGIK--PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVC 345 (401)
Q Consensus 268 ~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (401)
+++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888775320 367778888888888888888888888877653 234556777777777777777777654
Q ss_pred H
Q 015765 346 R 346 (401)
Q Consensus 346 ~ 346 (401)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 4
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.4e-12 Score=118.77 Aligned_cols=311 Identities=10% Similarity=-0.008 Sum_probs=177.5
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCc---hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHh
Q 015765 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHF---NAISQLLEELKTRPDLRQNERFHVHSIVLYGQ 123 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 123 (401)
....+.++++.|+++|....... +...+..+...+...|+. ++|.+.|++.... +...+..+...+..
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC---------------------------------CHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHh
Confidence 33444556666666666654331 222333444444555555 6666666666522 12234444443333
Q ss_pred cC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-----------------------------------HhcC---
Q 015765 124 AN-----MIDHAMQTFEEMDKYGLRQSVDALNALLLGC-----------------------------------ILSK--- 160 (401)
Q Consensus 124 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------------------~~~~--- 160 (401)
.+ ++++|...|++..+.|. ++ .+..|...| ...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 33 56667777766666542 22 233333333 3333
Q ss_pred -CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc----CC
Q 015765 161 -NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG---DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE----HK 232 (401)
Q Consensus 161 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~ 232 (401)
+.+.+..+++... ..+...+..+...|.+.| +.++|++.|++..+.| .++...+..+...|... ++
T Consensus 159 ~~~~~a~~~~~~a~-----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 159 QHLDDVERICKAAL-----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGHHHHHHHHHHHT-----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred cCHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 2333333333332 223336777777888888 8888888888888776 44555556666666554 68
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC-----ChH
Q 015765 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQS-L--CKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG-----NLE 304 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~~ 304 (401)
+++|...|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|. .| +++
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~ 304 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAK 304 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHH
Confidence 888888888877 33 45556666665 3 45788888888888888776 5667777777766 44 888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 015765 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISKVAEA 376 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 376 (401)
+|.++|++.. . -+...+..+...|.. ..++++|.++|++..+.|. ......|...|.. ..+.++|
T Consensus 305 ~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 305 AAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHH
Confidence 8888888776 3 355566666666665 3488888888888887762 3455566666654 4578888
Q ss_pred HHHHHHHHhcCCCC
Q 015765 377 NELIGLMKKRFPKS 390 (401)
Q Consensus 377 ~~~~~~~~~~~~~~ 390 (401)
...++...+...++
T Consensus 378 ~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 378 YVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHHHTTCCHH
T ss_pred HHHHHHHHHCCCHH
Confidence 88888887764443
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.2e-12 Score=120.00 Aligned_cols=214 Identities=9% Similarity=-0.085 Sum_probs=178.7
Q ss_pred chHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015765 91 FNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMI-DHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIF 169 (401)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 169 (401)
++++++.++..... .+.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56677777766533 244577888899999999999 99999999998875 556889999999999999999999999
Q ss_pred HhchhhcCCCCCHHhHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc--------CC
Q 015765 170 TEFPKVYGIEPNSETYNKVIKSFCES---------GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE--------HK 232 (401)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 232 (401)
++..+. .|+...+..+...+... |++++|.+.|++..+.. +.+...|..+..+|... |+
T Consensus 161 ~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 999754 67788888999999999 99999999999998763 44678889999999888 99
Q ss_pred hHHHHHHHHHHHHcCCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHH
Q 015765 233 YEDVGKVLQMMEKCGIA--SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 310 (401)
+++|...|++..+.... .+...|..+..+|...|++++|...|++..+.... +...+..+...+...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999886421 47788999999999999999999999999887432 5677888888888888888888765
Q ss_pred HH
Q 015765 311 AS 312 (401)
Q Consensus 311 ~~ 312 (401)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=1e-12 Score=113.29 Aligned_cols=244 Identities=12% Similarity=0.045 Sum_probs=171.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc------CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------
Q 015765 144 QSVDALNALLLGCILSKNYEEVKRIFTEFPKVY------GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK------ 211 (401)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 211 (401)
.+..++..+...+...|++++|..+++++.+.. ..+....++..+...|...|++++|.+.+++....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 346778888999999999999999999987521 11233556888899999999999999999998764
Q ss_pred CC-CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 015765 212 SI-RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC------GI-ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR-- 281 (401)
Q Consensus 212 ~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 281 (401)
+. +.....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...+++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 21 223567888889999999999999999988664 21 223466788889999999999999999998764
Q ss_pred ----CCCc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhC-------CCCCCHhh-------HHHHHHHHHccCCHHHHH
Q 015765 282 ----GIKP-NLDTYKHLIHGFGKEGNLEGAKKLFASMTNG-------GCEPDSYC-------FFMFTYFLCQGGEYETAL 342 (401)
Q Consensus 282 ----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~-------~~~li~~~~~~g~~~~a~ 342 (401)
+..| ...++..+...|...|++++|.+.++++.+. ...+.... +..+...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 2223 3467888899999999999999999998853 11222211 122222333444555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765 343 KVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
..++...... +....++..+..+|.+.|++++|.+++++..+..|
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6666555432 34567788999999999999999999999887643
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=2.1e-11 Score=110.96 Aligned_cols=251 Identities=10% Similarity=0.040 Sum_probs=180.8
Q ss_pred HHHHHHHHHhcCCh----HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhchhhcCCCCCHHhHH
Q 015765 114 HVHSIVLYGQANMI----DHAMQTFEEMDKYGLRQSVDALNALLLGCILSK---NYEEVKRIFTEFPKVYGIEPNSETYN 186 (401)
Q Consensus 114 ~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ 186 (401)
...+...|...+.+ +.+..++..... .++..+..+...|...| +.++|++.|++..+.. .++...+.
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~ 217 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVD 217 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 34444455555533 333333443332 23337788888999999 8999999999986642 55666557
Q ss_pred HHHHHHHhc----CChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-H--HccCChHHHHHHHHHHHHcCCCCCchhHHHHH
Q 015765 187 KVIKSFCES----GDSSSVYSILAEMRRKSIRPNATDFGLLLAG-F--YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRI 259 (401)
Q Consensus 187 ~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 259 (401)
.+...|... +++++|.++|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..+.
T Consensus 218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg 290 (452)
T 3e4b_A 218 SVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG 290 (452)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777777654 69999999999987 43 55666666666 4 56899999999999999876 566777787
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765 260 QSLCKLK-----RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTY 330 (401)
Q Consensus 260 ~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 330 (401)
..|. .| ++++|...|++.. .| +...+..|...|.. ..++++|.++|++..+.|. ......+..
T Consensus 291 ~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~ 362 (452)
T 3e4b_A 291 KLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQ 362 (452)
T ss_dssp HHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHH
T ss_pred HHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHH
Confidence 7777 55 9999999999887 43 67778888877766 4499999999999998763 345566666
Q ss_pred HHHc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765 331 FLCQ----GGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 331 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.|.. ..+.++|..+++...+.|. ++.......+......++.++|.++.++..+.
T Consensus 363 ~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 363 LFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 6664 4689999999999999883 33333333333344556788888888877664
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.46 E-value=6.3e-12 Score=99.39 Aligned_cols=169 Identities=12% Similarity=0.054 Sum_probs=109.5
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015765 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG 298 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 298 (401)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555566666666665554432 2344555566666666666666666666665542 224556666666666
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015765 299 KEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE 378 (401)
Q Consensus 299 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 378 (401)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766542 3355666777777777788888888887777664 4456777788888888888888888
Q ss_pred HHHHHHhcCCCCc
Q 015765 379 LIGLMKKRFPKSG 391 (401)
Q Consensus 379 ~~~~~~~~~~~~~ 391 (401)
.++++.+..|.+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 8888877655443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=5e-11 Score=106.07 Aligned_cols=298 Identities=10% Similarity=-0.032 Sum_probs=201.8
Q ss_pred hcCCChhHHHHHhhhccCCC---CCCccHhHHHHHHHHH--HhCCCchHHH---------HHHHHhhhCCCCCCc---hh
Q 015765 50 KSESNPFRILDICCGASLAP---ESPLDRMAFSIAVSKL--SQANHFNAIS---------QLLEELKTRPDLRQN---ER 112 (401)
Q Consensus 50 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~--~~~~~~~~a~---------~~~~~~~~~~~~~~~---~~ 112 (401)
-...+.+.|.++++.....- ....+...|-.++..- .-.+.+..+. +.++.+........+ ..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~ 102 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY 102 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence 45677899988887653210 1123444445444431 1112333333 566655421111010 11
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-----H
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGL-RQ----SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-----S 182 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~ 182 (401)
.+......+...|++++|+..|++..+... .+ ...++..+...|...|+++.|...+++..+...-.++ .
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 233345567789999999999999876321 12 2457788889999999999999999887654322222 4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCch
Q 015765 183 ETYNKVIKSFCESGDSSSVYSILAEMRRK----SIR-PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIASGVN 253 (401)
Q Consensus 183 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 253 (401)
.+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|...+++..+. +.+....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 46788999999999999999999987653 111 12346778889999999999999999988761 2233367
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhCCCCCC-HhhH
Q 015765 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRG----IKPNLDTYKHLIHGFGKEGN---LEGAKKLFASMTNGGCEPD-SYCF 325 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~-~~~~ 325 (401)
++..+..++.+.|++++|...+++..+.. .......+..+...|...++ +.+|..++++ .+..++ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHH
Confidence 78889999999999999999999987642 12223456677777878888 7777777765 222232 3466
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH
Q 015765 326 FMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
..+...|...|++++|.+.+++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888999999999999999998765
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.43 E-value=3e-11 Score=95.45 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHH
Q 015765 288 DTYKHLIHGFGKEGNLEGAKKLFASM 313 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m 313 (401)
..+..+...+...|++++|.+.++++
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333334444444444444444333
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.41 E-value=2.5e-10 Score=101.27 Aligned_cols=297 Identities=11% Similarity=0.012 Sum_probs=190.3
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCcc---HhHHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHHH
Q 015765 47 ARLKSESNPFRILDICCGASLAPESPLD---RMAFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSIV 119 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~ 119 (401)
..+...|+++.|+..+..+....+.... ...+..+...+...|++++|.+.+++... .+........+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4556778899999988876543211111 12456666778888999999999888772 2211111233556677
Q ss_pred HHHhcCChHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCC-CC--CHHhHHHHH
Q 015765 120 LYGQANMIDHAMQTFEEMDKY----GLR--Q-SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGI-EP--NSETYNKVI 189 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~ 189 (401)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+...- .+ ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 788899999999988887652 221 2 2345666777888899999999999887654211 11 234567777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCC---chhHHHHHH
Q 015765 190 KSFCESGDSSSVYSILAEMRRKSIRPN--ATDFG----LLLAGFYKEHKYEDVGKVLQMMEKCGIASG---VNVYNIRIQ 260 (401)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~ 260 (401)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 888889999999999988765321111 11111 233446788999999998888765432211 224566778
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 015765 261 SLCKLKRSEEAKALLDGMLSR----GIKPNL-DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG 335 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 335 (401)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..... +. ...+..+...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~~~~~ 335 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISHFVIE 335 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHHHHHc
Confidence 888889999999988877543 222222 356666777888899999999988887642 10 1122333444
Q ss_pred CCHHHHHHHHHHHHHC
Q 015765 336 GEYETALKVCRASMAK 351 (401)
Q Consensus 336 g~~~~a~~~~~~~~~~ 351 (401)
| +....+++.+...
T Consensus 336 g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 336 G--EAMAQQLRQLIQL 349 (373)
T ss_dssp H--HHHHHHHHHHHHT
T ss_pred c--HHHHHHHHHHHhC
Confidence 4 5556666666555
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=3.1e-11 Score=99.19 Aligned_cols=206 Identities=12% Similarity=0.079 Sum_probs=161.1
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHH
Q 015765 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIR 258 (401)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 258 (401)
+.|...+......+.+.|++++|.+.|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 446678888999999999999999999999887543677888889999999999999999999998875 3466788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC---HhhHHHH
Q 015765 259 IQSLCKLKRSEEAKALLDGMLSRGIKPNL-------DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD---SYCFFMF 328 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l 328 (401)
..++...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999886422 34 45778888889999999999999999875 454 4567777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 329 TYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
..+|... +..+++++...+ ..+...+.... ....+.+++|...+++..+..|.+......
T Consensus 160 ~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 160 GVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp HHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 7777544 344556665554 33444554443 334577899999999999998888765543
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=4.1e-11 Score=114.33 Aligned_cols=164 Identities=7% Similarity=0.038 Sum_probs=76.4
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+..+|+.+...+.+.|++++|++.|++..... |.+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34445555555555555555555555544211 2223344555555555555555555555554443 23344455555
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (401)
.+|...|++++|++.|++..+.. +-+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 55555555555555555444331 2223444444455555555555555555444431 22334444444444444444
Q ss_pred HHHHHHHHHH
Q 015765 234 EDVGKVLQMM 243 (401)
Q Consensus 234 ~~a~~~~~~~ 243 (401)
++|.+.++++
T Consensus 162 ~~A~~~~~ka 171 (723)
T 4gyw_A 162 TDYDERMKKL 171 (723)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=1.2e-11 Score=104.97 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=88.0
Q ss_pred CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhC------CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC-----
Q 015765 72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTR------PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY----- 140 (401)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----- 140 (401)
+....++..+...+...|++++|+..+++.... ++.+.....+..+...|...|++++|.+.|++..+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 335567777778888888888888888777632 333444566777777777778888887777776653
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhc-----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765 141 -G-LRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVY-----G-IEPNSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 141 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
. .+....++..+...|...|++++|...+++..+.. + .+....++..+...|...|++++|.+.+++..+
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12234556666677777777777777777665430 0 111234555666666666666666666666543
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=7.2e-09 Score=97.88 Aligned_cols=204 Identities=11% Similarity=0.052 Sum_probs=138.9
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC---------CCC---
Q 015765 185 YNKVIKSFCESGDSSSVY-SILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI---------ASG--- 251 (401)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~--- 251 (401)
|...+..+.+.|+.++|. ++|++.... ++.+...|...+...-+.|+++.|.++|+.+.+... .|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 334444455667777786 888887764 455666677777777888888888888888765310 121
Q ss_pred ---------chhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015765 252 ---------VNVYNIRIQSLCKLKRSEEAKALLDGMLSR-G-IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP 320 (401)
Q Consensus 252 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 320 (401)
..+|...+....+.|+.+.|..+|.+..+. + ..+......+.+... ..++.+.|.++|+..++. .+-
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~-~p~ 502 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY-FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH-HTT
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCC
Confidence 235777777777788888888888888775 2 122233333333322 234588888888888775 233
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765 321 DSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP--HFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
+...+...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.+.+|.+.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 55566677777778888899999998888764211 345677777777888988889999998888887654
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=6.4e-11 Score=113.05 Aligned_cols=168 Identities=9% Similarity=-0.009 Sum_probs=99.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187 (401)
Q Consensus 108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 187 (401)
|.+...++.+...|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +-+..+|..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 3345556666666666666666666666666553 3345566666666666666666666666665431 223455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC
Q 015765 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 267 (401)
+...|.+.|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.. +.+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 6666666666666666666665542 2245566666666666666666666666665543 2344556666666666666
Q ss_pred HHHHHHHHHHHHH
Q 015765 268 SEEAKALLDGMLS 280 (401)
Q Consensus 268 ~~~a~~~~~~~~~ 280 (401)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555443
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=3.2e-10 Score=93.07 Aligned_cols=207 Identities=11% Similarity=-0.020 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015765 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (401)
+.++..+......+...|++++|+..|++..+.. .+++...+..+..++...|++++|.+.|++..+.. +.+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 3467888889999999999999999999997653 12677788889999999999999999999998863 336678899
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCc-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHH
Q 015765 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGV-------NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN---LDTYKH 292 (401)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ 292 (401)
+..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 9999999999999999999998864 3344 45778888899999999999999999886 454 466777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 015765 293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSL 363 (401)
Q Consensus 293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 363 (401)
+..+|... +..+++++...+ ..+...|.... ....+.+++|...+++..+.. +.+..+...+
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 77777544 344556665543 23344444443 334567899999999998874 3344444333
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.32 E-value=3.3e-11 Score=102.16 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=80.3
Q ss_pred hCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHH
Q 015765 87 QANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY------GL-RQSVDALNALL 153 (401)
Q Consensus 87 ~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 153 (401)
..|++++|+..+++... ..+.+....++..+...|...|++++|...+++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666666666655552 1122333455666666666666666666666665543 11 12244555566
Q ss_pred HHHHhcCCHHHHHHHHHhchhhc-----C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHhH
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVY-----G-IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK------SIRP-NATDF 220 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 220 (401)
..|...|++++|.+.+++..+.. . .+....++..+...|...|++++|.+.+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 66666666666666666654321 0 0112334455555555555566555555555432 0011 12344
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 015765 221 GLLLAGFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 221 ~~ll~~~~~~~~~~~a~~~~~~~~ 244 (401)
..+...+...|++++|...++++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555554443
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=5e-10 Score=94.29 Aligned_cols=245 Identities=7% Similarity=-0.039 Sum_probs=147.3
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 015765 82 VSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKN 161 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (401)
++-.-..|.+..++.-...+. + ..+ ......+.++|...|+++.. ..-.|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~--~-~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS--K-VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS--C-CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcC--c-cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc-
Confidence 455567788888887443332 1 122 23444455777777776642 111344334433333 33322
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHccCChHHHHHHH
Q 015765 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSI-RPNATDFGLLLAGFYKEHKYEDVGKVL 240 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 240 (401)
|+..|++..+.. +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 ---a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ---NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ---CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667777665431 45555566777778888888888888887765542 235566777778888888888888888
Q ss_pred HHHHHcCCCC-----CchhHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHH
Q 015765 241 QMMEKCGIAS-----GVNVYNIRIQS--LCKLK--RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA 311 (401)
Q Consensus 241 ~~~~~~~~~~-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 311 (401)
+.|.+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 888765 34 24445555555 22233 788888888887665 3443333344447777888888888887
Q ss_pred HHHhC-----CC----CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765 312 SMTNG-----GC----EPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 312 ~m~~~-----~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
.+.+. .. +.|..++..+|......|+ +|.++++++.+..
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 65542 10 2345555455555555665 7777887777663
No 87
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=2.5e-09 Score=100.97 Aligned_cols=320 Identities=8% Similarity=0.010 Sum_probs=162.0
Q ss_pred ccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC---hHHHHHHHHHHhhCC-CCCCHHH
Q 015765 73 LDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM---IDHAMQTFEEMDKYG-LRQSVDA 148 (401)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 148 (401)
.|...|..++..+.+.+.++.+..+|+.+... +|.....|..-+..-.+.|. ++.+..+|++.+... .+|+...
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 36667777777777777777777777776632 23345566666666666666 777777777766543 1266666
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHHhchhhcCC-CCC-HHhHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 015765 149 LNALLLGCILSKNY--------EEVKRIFTEFPKVYGI-EPN-SETYNKVIKSFC---------ESGDSSSVYSILAEMR 209 (401)
Q Consensus 149 ~~~l~~~~~~~~~~--------~~a~~~~~~~~~~~~~-~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 209 (401)
|...+....+.++. +.+.++|+......|. .++ ...|...+.... ..++++.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 66666554443332 3344566665555555 443 345555554322 1223455555555554
Q ss_pred hCCCCCCHHhHH--------------------------------------------------------------------
Q 015765 210 RKSIRPNATDFG-------------------------------------------------------------------- 221 (401)
Q Consensus 210 ~~~~~~~~~~~~-------------------------------------------------------------------- 221 (401)
......-..+|.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 321110011111
Q ss_pred -----HHHHHHHccC-------ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCcCHH
Q 015765 222 -----LLLAGFYKEH-------KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK-ALLDGMLSRGIKPNLD 288 (401)
Q Consensus 222 -----~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~p~~~ 288 (401)
..+.---..+ ..+.+..+|++.... ++.....|-..+..+...|+.++|. .+|++.... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 1110000000 001112223332222 1222333444444444556666665 777666653 233455
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhCC---------CCCC------------HhhHHHHHHHHHccCCHHHHHHHHHH
Q 015765 289 TYKHLIHGFGKEGNLEGAKKLFASMTNGG---------CEPD------------SYCFFMFTYFLCQGGEYETALKVCRA 347 (401)
Q Consensus 289 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (401)
.|...+....+.|++++|.++|+.+++.. -.|+ ...|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666666666777777777777766421 0121 23466666666666777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 348 SMAKGWVPHFSTMKSLVTGLASI-SKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+++.........|...+..-.+. ++.+.|.++|+...+.+|.+...|..
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~ 509 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINK 509 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHH
Confidence 76651112233343333333333 34677777777777776666666544
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=7e-10 Score=82.35 Aligned_cols=132 Identities=12% Similarity=0.115 Sum_probs=87.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLC 333 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (401)
.+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|.++++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345566666666777777777766665432 245566666666666777777777777766543 234556666677777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Q 015765 334 QGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFP 388 (401)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 388 (401)
..|++++|.++++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..|
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 7777777777777776653 34566677777777777777777777777766544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=3.8e-08 Score=82.87 Aligned_cols=184 Identities=7% Similarity=-0.012 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765 201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI-ASGVNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
|...|+++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555544433 33334444555555555555555555555544331 1234445555555555555555555555555
Q ss_pred HCCCCc-----CHHHHHHHHHHHh----cCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 015765 280 SRGIKP-----NLDTYKHLIHGFG----KEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMA 350 (401)
Q Consensus 280 ~~~~~p-----~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (401)
+. .| +..+...+..++. ..+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 33 1333333333311 122555555555555443 23322222333355555555555555554333
Q ss_pred C-----C----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765 351 K-----G----WVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 351 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
. + -+.++.++..++......|+ +|.++++++.+..|.++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2 0 02244444344433434444 55555555555555443
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=5.5e-10 Score=95.47 Aligned_cols=209 Identities=9% Similarity=-0.007 Sum_probs=130.9
Q ss_pred CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHhHHHHHHHHHccCChHH
Q 015765 161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK----SIRPN-ATDFGLLLAGFYKEHKYED 235 (401)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~ 235 (401)
++++|...|++. ...|...|++++|.+.|++.... |-+++ ..+|..+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366777766665 23456677788877777766442 21111 3567777777778888888
Q ss_pred HHHHHHHHHHcCCC---C--CchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC----CcC-HHHHHHHHHHHhcCCChH
Q 015765 236 VGKVLQMMEKCGIA---S--GVNVYNIRIQSLCKL-KRSEEAKALLDGMLSRGI----KPN-LDTYKHLIHGFGKEGNLE 304 (401)
Q Consensus 236 a~~~~~~~~~~~~~---~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~----~p~-~~~~~~li~~~~~~~~~~ 304 (401)
|+..+++..+.... + -..+++.+..+|... |++++|...|++..+... .+. ..++..+...+.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 88777776543110 0 134677777777775 888888888887765311 000 345777778888888888
Q ss_pred HHHHHHHHHHhCCCCCCH------hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--cc
Q 015765 305 GAKKLFASMTNGGCEPDS------YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF------STMKSLVTGLA--SI 370 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~ 370 (401)
+|...|++..+....... ..|..+..++...|++++|...+++..+. .|+. ..+..++.+|. ..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 888888888765322211 14566677777888888888888877654 2221 13444555554 45
Q ss_pred CCHHHHHHHHHHHHhcC
Q 015765 371 SKVAEANELIGLMKKRF 387 (401)
Q Consensus 371 g~~~~a~~~~~~~~~~~ 387 (401)
+++++|++.|+++.+..
T Consensus 254 ~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp TTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHhccCCccH
Confidence 66777777776665443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=2.6e-09 Score=91.25 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=99.9
Q ss_pred HHhcCChHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHH
Q 015765 121 YGQANMIDHAMQTFEEMDKY----GLRQS-VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKS 191 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 191 (401)
|...|++++|...|++..+. |-++. ..+|+.+..+|...|++++|+..|++..+...-..+ ..+++.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44455555555555544331 21111 344555555555555555555555554432100111 2345566666
Q ss_pred HHhc-CChhHHHHHHHHHHhCCCC-CC----HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc------hhHHHHH
Q 015765 192 FCES-GDSSSVYSILAEMRRKSIR-PN----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV------NVYNIRI 259 (401)
Q Consensus 192 ~~~~-~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll 259 (401)
|... |++++|+..|++..+.... .+ ..++..+...+.+.|++++|...|++..+....... ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 6666666666665442100 01 234666666777777777777777776664322211 1355566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHHh--cCCChHHHHHHHHHHHh
Q 015765 260 QSLCKLKRSEEAKALLDGMLSRGIKPN------LDTYKHLIHGFG--KEGNLEGAKKLFASMTN 315 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~li~~~~--~~~~~~~a~~~~~~m~~ 315 (401)
.++...|++++|...|++..+. .|+ ...+..++.+|. ..+++++|++.|+.+..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 6667777777777777766553 222 112334455553 34566777777666543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.6e-09 Score=90.86 Aligned_cols=193 Identities=11% Similarity=0.018 Sum_probs=113.3
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCch
Q 015765 179 EPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN---ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA--SGVN 253 (401)
Q Consensus 179 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 253 (401)
+.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|...|+.+.+.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3445566677777778888888888888877653 223 556677777788888888888888887775311 1134
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH
Q 015765 254 VYNIRIQSLCK--------LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF 325 (401)
Q Consensus 254 ~~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 325 (401)
.+..+..++.. .|++++|...|+++.+.... +......+. .+...... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 45566666666 77777777777777765221 111111110 00000000 00113
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhcCCCCc
Q 015765 326 FMFTYFLCQGGEYETALKVCRASMAKGWVP--HFSTMKSLVTGLASI----------SKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~ 391 (401)
..+...|...|++++|...++++.+..... ....+..+..+|... |++++|...++++.+.+|.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 445566667777777777777766542111 234555666666544 667777777777777666654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.17 E-value=3.5e-09 Score=78.48 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015765 115 VHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194 (401)
Q Consensus 115 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (401)
..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHH
Confidence 334444444444555554444444432 2234444444444444444444444444443321 2223334444444444
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015765 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (401)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444444443321 2223334444444444444444444444443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=3.1e-09 Score=89.10 Aligned_cols=102 Identities=8% Similarity=-0.043 Sum_probs=73.3
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQSVDALN 150 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~ 150 (401)
+...+......+.+.|++++|+..|+.+.. .|..+.....+..+..+|.+.|++++|+..|++..+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 456667777778888888888888888873 333322256677778888888888888888888877531 12245566
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHhchhh
Q 015765 151 ALLLGCIL--------SKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 151 ~l~~~~~~--------~~~~~~a~~~~~~~~~~ 175 (401)
.+..++.. .|++++|+..|+++.+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 67777777 88888888888888765
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.11 E-value=3.1e-09 Score=99.87 Aligned_cols=154 Identities=13% Similarity=0.024 Sum_probs=107.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 015765 195 SGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKAL 274 (401)
Q Consensus 195 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 274 (401)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467888888888887652 3457778888888888899999999888888764 34567788888888888999999988
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHC
Q 015765 275 LDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQG---GEYETALKVCRASMAK 351 (401)
Q Consensus 275 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~ 351 (401)
+++..+... .+...+..+..+|...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 888887642 256788888888888889999988888888753 33466777888888888 8888888888888876
Q ss_pred C
Q 015765 352 G 352 (401)
Q Consensus 352 ~ 352 (401)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=7.4e-09 Score=83.57 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=9.2
Q ss_pred HHhcCChHHHHHHHHHHhh
Q 015765 121 YGQANMIDHAMQTFEEMDK 139 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~ 139 (401)
+...|++++|+..|++..+
T Consensus 14 ~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 3444555555555554444
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=3e-08 Score=80.19 Aligned_cols=128 Identities=12% Similarity=0.104 Sum_probs=59.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC----ChHHHHHHHHHHHHcCCCCCchhHH
Q 015765 181 NSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH----KYEDVGKVLQMMEKCGIASGVNVYN 256 (401)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 256 (401)
+...+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.+.|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44445555555555555555555555554443 33444444444444 3 4555555555554433 333444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHhc----CCChHHHHHHHHHHHh
Q 015765 257 IRIQSLCK----LKRSEEAKALLDGMLSRGIK-PNLDTYKHLIHGFGK----EGNLEGAKKLFASMTN 315 (401)
Q Consensus 257 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~ 315 (401)
.+...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|.++|++..+
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 44444443 44555555555554444311 013444444444444 4445555555555444
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.08 E-value=2.5e-09 Score=102.42 Aligned_cols=170 Identities=8% Similarity=-0.112 Sum_probs=82.3
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765 122 GQANMIDHAMQTFEEMD--------KYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 122 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|++.|++..+.. +.+...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 34455555555555554 222 2334445555555555555555555555554432 233444555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015765 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA 273 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 273 (401)
+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|..
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 2234444555555555555555 55555555443 2234445555555555555555555
Q ss_pred HHHHHHHCCCCcC-HHHHHHHHHHHhc
Q 015765 274 LLDGMLSRGIKPN-LDTYKHLIHGFGK 299 (401)
Q Consensus 274 ~~~~~~~~~~~p~-~~~~~~li~~~~~ 299 (401)
.|++..+. .|+ ...+..+..++..
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC-
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHc
Confidence 55554443 222 3344444444433
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=1.7e-08 Score=82.47 Aligned_cols=184 Identities=10% Similarity=0.042 Sum_probs=110.4
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHH
Q 015765 75 RMAFSIAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSV---DALN 150 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 150 (401)
...+..+...+.+.|++++|+..|+++.. .|..+.....+..+..+|.+.|++++|+..|+++.+.... +. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence 34455556667777888888888887773 3333333456667777778888888888888887765311 21 2333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHhchhhcCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 015765 151 ALLLGCIL------------------SKNYEEVKRIFTEFPKVYGIEPNSE-TYNKVIKSFCESGDSSSVYSILAEMRRK 211 (401)
Q Consensus 151 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 211 (401)
.+..++.. .|++++|...|+++.+. .|+.. .+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----------~~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----------VFLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----------HHHHHHH---
Confidence 34444433 45677777777777654 23322 22111100 0000000
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015765 212 SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV----NVYNIRIQSLCKLKRSEEAKALLDGMLSRG 282 (401)
Q Consensus 212 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (401)
......+...+.+.|++++|...|+.+.+.. |+. ..+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0011245567778888888888888887753 222 457777888888888888888888887764
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=1e-08 Score=82.78 Aligned_cols=163 Identities=10% Similarity=0.014 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHH----------------HHHHHHhcCChHHHHHHHHHHhhC
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVH----------------SIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
.+......+...|++++|+..|++..... |.+...+.. +..+|.+.|++++|+..|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444556667788888888887776321 222334444 556666666666666666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHH
Q 015765 141 GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD--SSSVYSILAEMRRKSIRPNAT 218 (401)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 218 (401)
. +.+...+..+..++...|++++|+..|++..+.. +.+..++..+...|...|+ .+.+...+..... ..|...
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 4 3455666666666666666666666666665442 3334455555555544332 2333344433321 111222
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (401)
.+.....++...|++++|...|++..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2233333444455566666666655553
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=8.5e-09 Score=80.80 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH-H
Q 015765 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS-F 192 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 192 (401)
+......+...|++++|...|++..+.. +.+...+..+..++...|++++|+..+++..+. .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4455566677777777777777766654 445667777777777777777777777777654 2333322222111 1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhcCCHHHH
Q 015765 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a 271 (401)
...++...|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223334566666665542 2345566666666666666666666666666553221 234566666666666666666
Q ss_pred HHHHHHHH
Q 015765 272 KALLDGML 279 (401)
Q Consensus 272 ~~~~~~~~ 279 (401)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.06 E-value=3.6e-08 Score=83.84 Aligned_cols=167 Identities=10% Similarity=0.042 Sum_probs=121.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187 (401)
Q Consensus 108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 187 (401)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHH
Confidence 3445566777777888888888888888887765 556778888888888888888888888888654 455443332
Q ss_pred H-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CchhHHHHHHHHHhc
Q 015765 188 V-IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIAS-GVNVYNIRIQSLCKL 265 (401)
Q Consensus 188 l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~ 265 (401)
. ...+.+.++.+.|...+++..... +.+...+..+...+...|++++|...|+.+.+..... +...+..+...+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2 233566677778888888877653 4467777888888888888888888888887764221 256677788888888
Q ss_pred CCHHHHHHHHHHHH
Q 015765 266 KRSEEAKALLDGML 279 (401)
Q Consensus 266 ~~~~~a~~~~~~~~ 279 (401)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 88888877776654
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.06 E-value=3.4e-08 Score=80.75 Aligned_cols=191 Identities=10% Similarity=0.106 Sum_probs=121.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCc--hhHHH
Q 015765 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKSIR-P-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGV--NVYNI 257 (401)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 257 (401)
...+..+...+.+.|++++|...|+++.+.... + ....+..+..++.+.|++++|...|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445666777788899999999999998775311 1 1356777888899999999999999998876422111 13444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHh--------------
Q 015765 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSY-------------- 323 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------- 323 (401)
+..++...|.. .+ ..|..+...+...|++++|...|+++++. .|+..
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence 44444432110 00 00111122222344455555555554443 12211
Q ss_pred ----hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765 324 ----CFFMFTYFLCQGGEYETALKVCRASMAKGWVPH----FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDM 393 (401)
Q Consensus 324 ----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (401)
....+...|.+.|++++|...++++++.. |+ ...+..+..+|.+.|++++|.+.++.+....|.+...
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11345667889999999999999998863 33 2568889999999999999999999998887776543
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=3.2e-09 Score=101.64 Aligned_cols=156 Identities=8% Similarity=0.022 Sum_probs=79.7
Q ss_pred HhCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 015765 86 SQANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILS 159 (401)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 159 (401)
...|++++|++.+++... ....+.+...+..+...+...|++++|++.|++..+.+ +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 445555555555555540 01112333445555555555555555555555555543 33455555555555555
Q ss_pred CCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 015765 160 KNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKV 239 (401)
Q Consensus 160 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 239 (401)
|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555554431 2234445555555555555555 55555555432 22444555555555555555555555
Q ss_pred HHHHHHc
Q 015765 240 LQMMEKC 246 (401)
Q Consensus 240 ~~~~~~~ 246 (401)
|+++.+.
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 5555443
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=3.3e-08 Score=80.00 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=78.1
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC----CHHHHHHHHH
Q 015765 201 VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK----RSEEAKALLD 276 (401)
Q Consensus 201 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~ 276 (401)
|++.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444433 34444444444444555555555555554443 23334444444444 3 4555555555
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 015765 277 GMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCE-PDSYCFFMFTYFLCQ----GGEYETALKVCRA 347 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~ 347 (401)
+..+.| +...+..|...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|.++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 33444444444443 44555555555555443310 013344444444444 4455555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHhc
Q 015765 348 SMAKGWVPHFSTMKSLVTGLASI-S-----KVAEANELIGLMKKR 386 (401)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 386 (401)
..+. ..+...+..|...|... | ++++|.+.+++..+.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5443 11223344444444321 1 455555555554443
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=2.7e-07 Score=78.42 Aligned_cols=225 Identities=9% Similarity=-0.030 Sum_probs=133.3
Q ss_pred HHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCC--CchHHHHHHHHhhh-CCCCCCchhHHHHHHHHH--
Q 015765 47 ARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQAN--HFNAISQLLEELKT-RPDLRQNERFHVHSIVLY-- 121 (401)
Q Consensus 47 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~-- 121 (401)
.........++|++.+..+... .|-...+|+.--..+...| +++++++.++.+.. .|... .+++.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---~aW~~R~~iL~~ 115 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---QIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---HHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---HHHHHHHHHHHH
Confidence 3344555666788877776533 2224556777777777777 78888888877773 33332 3444333333
Q ss_pred --Hhc---CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHhchhhcCCCCCHHhHHHHHHHHHh
Q 015765 122 --GQA---NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYE--EVKRIFTEFPKVYGIEPNSETYNKVIKSFCE 194 (401)
Q Consensus 122 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 194 (401)
... +++++++++++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+.. +-|..+|+.-...+.+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 333 67777777777777765 556777776666666666666 7777777776653 4556666655555555
Q ss_pred cCC------hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH-HHHHHHHHHHcC--CCCCchhHHHHHHHHHhc
Q 015765 195 SGD------SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYED-VGKVLQMMEKCG--IASGVNVYNIRIQSLCKL 265 (401)
Q Consensus 195 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~ 265 (401)
.+. ++++++.++++.... +-|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..+..+|.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 554 666666666666553 3356666666666655555332 334444443321 122445555666666666
Q ss_pred CCHHHHHHHHHHHHH
Q 015765 266 KRSEEAKALLDGMLS 280 (401)
Q Consensus 266 ~~~~~a~~~~~~~~~ 280 (401)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 666666666666654
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=6.6e-07 Score=76.02 Aligned_cols=115 Identities=8% Similarity=-0.077 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 015765 92 NAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN--MIDHAMQTFEEMDKYGLRQSVDALNALLLGC----ILS---KNY 162 (401)
Q Consensus 92 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 162 (401)
++|+++++.+.... |.+..+++.--.++...| +++++++.++.+.... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35555555555211 122234444444444444 5555555555555443 23344444333333 222 344
Q ss_pred HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh--HHHHHHHHHHhC
Q 015765 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS--SVYSILAEMRRK 211 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~ 211 (401)
++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.
T Consensus 127 ~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 127 YREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 45555555544432 334444444444444444444 444444444443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=1.2e-08 Score=79.88 Aligned_cols=161 Identities=10% Similarity=0.040 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHH-H
Q 015765 149 LNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAG-F 227 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~ 227 (401)
+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..... |+...+...... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 4445667778888888888888877653 4456677888888888888888888888775542 233332222111 1
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcCCChHHH
Q 015765 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKEGNLEGA 306 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a 306 (401)
...++..++...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566666666543 2345666666666777777777777777666654322 244566666666666777766
Q ss_pred HHHHHHHH
Q 015765 307 KKLFASMT 314 (401)
Q Consensus 307 ~~~~~~m~ 314 (401)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=4.4e-09 Score=80.01 Aligned_cols=141 Identities=11% Similarity=0.011 Sum_probs=76.1
Q ss_pred HHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 015765 85 LSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE 164 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 164 (401)
+...|++++|++.++.... ..+.+...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3344556666666665541 122223344455666666666666666666666554 3456666666666666666666
Q ss_pred HHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCHHhHHHHHHHHHccC
Q 015765 165 VKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI-LAEMRRKSIRPNATDFGLLLAGFYKEH 231 (401)
Q Consensus 165 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (401)
|+..|++..+.. +-+..++..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 84 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666665442 22345566666666666666554443 35554431 224444544444444444
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=2.5e-08 Score=93.59 Aligned_cols=152 Identities=7% Similarity=-0.112 Sum_probs=67.9
Q ss_pred CChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHH
Q 015765 53 SNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQ 132 (401)
Q Consensus 53 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 132 (401)
+++++|++.++.+... .+.+...|..+...+...|++++|.+.+++..... +.+...+..+...|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555554332 22234455555555555555555555555554221 2234455555555555555555555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc---CChhHHHHHHHHHH
Q 015765 133 TFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES---GDSSSVYSILAEMR 209 (401)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~ 209 (401)
.|++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 555555443 3344555555555555555555555555554331 22334445555555555 55555555555554
Q ss_pred hC
Q 015765 210 RK 211 (401)
Q Consensus 210 ~~ 211 (401)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=6.7e-08 Score=83.07 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=143.0
Q ss_pred CCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015765 88 ANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKR 167 (401)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 167 (401)
.|++++|.+++++...... . .+ +...++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~--~~-------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T--SF-------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C--CS-------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c--cc-------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4677888888887662211 1 00 11146777777777664 346677888888888
Q ss_pred HHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--HHhHHHHHHHHHccCChHHHHH
Q 015765 168 IFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEMRRKS---IRPN--ATDFGLLLAGFYKEHKYEDVGK 238 (401)
Q Consensus 168 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~~~~~~a~~ 238 (401)
.|.+..+...-..+ ..+|+.+...|.+.|++++|...|++....- -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88776543210111 3467778888888899999998888765421 1111 3466777777877 88999888
Q ss_pred HHHHHHHcCCCC-----CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHhcCCChHHHHH
Q 015765 239 VLQMMEKCGIAS-----GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPN-LDTYKHLIHGFGKEGNLEGAKK 308 (401)
Q Consensus 239 ~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~ 308 (401)
.+++..+..... ...+++.+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888775531111 1356777788888888888888888887653 21111 2356666677777788888888
Q ss_pred HHHHHHhCCCCCC---H---hhHHHHHHHHHccCCHHHHHH
Q 015765 309 LFASMTNGGCEPD---S---YCFFMFTYFLCQGGEYETALK 343 (401)
Q Consensus 309 ~~~~m~~~~~~~~---~---~~~~~li~~~~~~g~~~~a~~ 343 (401)
.|++.. . .|+ . .....++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888877 3 232 1 1233444444 4666665555
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=3.2e-09 Score=80.77 Aligned_cols=109 Identities=7% Similarity=-0.029 Sum_probs=49.2
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015765 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY 202 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (401)
..|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHHH
Confidence 3444555555555444321 1122233344445555555555555555554331 223444455555555555555555
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHccCChHH
Q 015765 203 SILAEMRRKSIRPNATDFGLLLAGFYKEHKYED 235 (401)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 235 (401)
..|++..+.. +-+...+..+...+.+.|++++
T Consensus 86 ~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 86 ECYRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 5555544431 2234444444444555554443
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.96 E-value=4.3e-08 Score=83.39 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHH
Q 015765 143 RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGL 222 (401)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 222 (401)
+.+...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|++++|...++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 4455666667777778888888888888876652 345567777777888888888888888877554 234332222
Q ss_pred -HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHhcC
Q 015765 223 -LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP-NLDTYKHLIHGFGKE 300 (401)
Q Consensus 223 -ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 300 (401)
....+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+..... +...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2223556666777777777776664 4456677777777777777777777777777653221 245677777777777
Q ss_pred CChHHHHHHHHHHH
Q 015765 301 GNLEGAKKLFASMT 314 (401)
Q Consensus 301 ~~~~~a~~~~~~m~ 314 (401)
|+.++|...|++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777666544
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=7.6e-06 Score=74.92 Aligned_cols=325 Identities=9% Similarity=-0.031 Sum_probs=185.9
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCC-chHHHHHHHHhhhC-CCCCCchhHHH
Q 015765 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANH-FNAISQLLEELKTR-PDLRQNERFHV 115 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~ 115 (401)
.+..+..++..+.. ++.+++..+|+.+... . |+...|...+....+.++ .+....+|+..... +..+.+..+|.
T Consensus 14 aR~vyer~l~~~P~-~~~e~~~~iferal~~--~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 14 PSAIMEHARRLYMS-KDYRSLESLFGRCLKK--S-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--C-CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--C-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34455556666655 6789999999888764 2 478888888887777663 45577788877632 22333456777
Q ss_pred HHHHHHH----hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH------------------------------------
Q 015765 116 HSIVLYG----QANMIDHAMQTFEEMDKYGLRQSVDALNALLLG------------------------------------ 155 (401)
Q Consensus 116 ~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------ 155 (401)
..+..+. ..|+.+.+.++|+..+......-...|......
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7776543 346788888899888763211111222211110
Q ss_pred --------HHh--cCC---------HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 015765 156 --------CIL--SKN---------YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN 216 (401)
Q Consensus 156 --------~~~--~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 216 (401)
|+. .++ .+.+..+|++..... +.+...|...+..+.+.|+.+.|.++|++.... +.+
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 000 010 122334444444321 333445555555556666666666666666654 222
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHcC---------C---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 015765 217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG---------I---ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284 (401)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (401)
...+.. |....+.++. ++.+.+.- . .....+|...+....+.++.+.|..+|++. .. ..
T Consensus 246 ~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~ 316 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EG 316 (493)
T ss_dssp SHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SC
T ss_pred HHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CC
Confidence 222211 1111111111 11111110 0 001234555555555677899999999988 32 12
Q ss_pred cCHHHHH--HHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015765 285 PNLDTYK--HLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS 362 (401)
Q Consensus 285 p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (401)
.+...|. +.+.... .++.+.|..+|+...+.. +-+...+...+....+.|+.+.|..+|+++. .....|..
T Consensus 317 ~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 2344443 3333322 336999999999988752 2234456667777788899999999999862 25677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhc
Q 015765 363 LVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
.+..-...|+.+.+.+++++..+.
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888777889999999999888764
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=3.3e-08 Score=85.03 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC--H
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY----GLRQS--V 146 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~ 146 (401)
.|......+...|++++|...|.+... .+....-...+..+...|...|++++|+..|++..+. | .+. .
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 344445556666666666666665541 1111111334555555666666666666666654431 1 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 015765 147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEMR 209 (401)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 209 (401)
.+++.+...|.. |++++|+..|++..+...-..+ ..++..+...|.+.|++++|++.|++..
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344445555555 5666665555554432100000 2334445555555555555555555543
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=3.5e-08 Score=72.42 Aligned_cols=107 Identities=11% Similarity=0.098 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 455666777777888888888887777653 3356677777778888888888888888777764 44667777788888
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 368 ASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
...|++++|.+.|++..+..|.+...+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~ 120 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREG 120 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 88888888888888888877777666543
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=3.9e-07 Score=77.69 Aligned_cols=95 Identities=6% Similarity=-0.073 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCCC-Hh
Q 015765 255 YNIRIQSLCKLKRSEEAKALLDGMLS----R-GIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEPD-SY 323 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~ 323 (401)
++.+..+|...|++++|...|++..+ . +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 44444444444444444444444432 0 11111 124444455555555555555555444321 11111 33
Q ss_pred hHHHHHHHHHccC-CHHHHHHHHHHHH
Q 015765 324 CFFMFTYFLCQGG-EYETALKVCRASM 349 (401)
Q Consensus 324 ~~~~li~~~~~~g-~~~~a~~~~~~~~ 349 (401)
+|..+..++.+.| .+++|.+.++++.
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4455555555555 2355555555443
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=4.6e-07 Score=73.08 Aligned_cols=125 Identities=12% Similarity=-0.006 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc
Q 015765 151 ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE 230 (401)
Q Consensus 151 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 230 (401)
.+...+...|++++|...|++.. .|+...+..+...+.+.|++++|.+.|++..... +.+...+..+..++...
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 34444445555555555555542 3344455555555555555555555555554432 22444555555555555
Q ss_pred CChHHHHHHHHHHHHcCCC--------------C-CchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765 231 HKYEDVGKVLQMMEKCGIA--------------S-GVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 231 ~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
|++++|...+++..+.... | ....+..+..++.+.|++++|...|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555555443211 0 1145555666666666666666666666654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=3.8e-07 Score=73.55 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=60.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
...+...|++++|...|++.. .|+...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence 334444555555555554442 3344455555555555555555555555544331 2233444555555555555
Q ss_pred hhHHHHHHHHHHhCCCC--------------C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765 198 SSSVYSILAEMRRKSIR--------------P-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (401)
+++|.+.|++..+.... | ....+..+..++.+.|++++|...++...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555443110 0 1144555555666666666666666666554
No 120
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=1.8e-06 Score=73.59 Aligned_cols=162 Identities=12% Similarity=0.022 Sum_probs=101.4
Q ss_pred HHHHccCChHHHHHHHHHHHHcCC-CCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHH
Q 015765 225 AGFYKEHKYEDVGKVLQMMEKCGI-ASG----VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK-PN----LDTYKHLI 294 (401)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li 294 (401)
..+...|++++|..++++..+... .++ ...+..+...+...|++++|...|++..+.... ++ ..+++.+.
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 334444555555555554443211 111 112333555555666777777777777663211 12 23678888
Q ss_pred HHHhcCCChHHHHHHHHHHHh----C-CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 015765 295 HGFGKEGNLEGAKKLFASMTN----G-GCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAK----GWVPH-FSTMKSL 363 (401)
Q Consensus 295 ~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l 363 (401)
..|...|++++|.+.|+++.+ . +..+. ..++..+...|.+.|++++|..++++..+. +..+. ..++..+
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 242 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 888888888888888888773 1 11222 236777888888888888888888876653 21222 5678888
Q ss_pred HHHHHccCC-HHHHHHHHHHHHhc
Q 015765 364 VTGLASISK-VAEANELIGLMKKR 386 (401)
Q Consensus 364 ~~~~~~~g~-~~~a~~~~~~~~~~ 386 (401)
..+|.+.|+ +++|.+.+++..+.
T Consensus 243 g~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 243 GECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888888884 68888888887664
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=3.7e-07 Score=77.81 Aligned_cols=164 Identities=9% Similarity=0.011 Sum_probs=79.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCC--CCC--HHhHH
Q 015765 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQS-----VDALNALLLGCILSKNYEEVKRIFTEFPKVYGI--EPN--SETYN 186 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~~ 186 (401)
..+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|+..+++..+...- .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455555566666555555444321111 011223444455555666666665554322100 111 23555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHHhHHHHHHHHHccCChHHHHHHHHHHHHcC----CCC-CchhH
Q 015765 187 KVIKSFCESGDSSSVYSILAEMRR---K-SIRP--NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG----IAS-GVNVY 255 (401)
Q Consensus 187 ~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~ 255 (401)
.+...|...|++++|...|++..+ . +..+ ...++..+...|...|++++|...+++..+.. ... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 566666666666666666655541 1 1011 11355556666666666666666665554321 000 13455
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHH
Q 015765 256 NIRIQSLCKLKRSEEA-KALLDGML 279 (401)
Q Consensus 256 ~~ll~~~~~~~~~~~a-~~~~~~~~ 279 (401)
..+..+|.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5666666666666666 55455443
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=1.9e-07 Score=70.66 Aligned_cols=99 Identities=8% Similarity=-0.037 Sum_probs=54.7
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+...+..+...+.+.|++++|+..|+.+.... |.+...|..+..+|...|++++|+..|++..+.. +.+...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 34455555555566666666666666555221 2334455555555666666666666666655544 33455555555
Q ss_pred HHHHhcCCHHHHHHHHHhchhh
Q 015765 154 LGCILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~ 175 (401)
.+|...|++++|...|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 5666666666666666555443
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=3.3e-06 Score=72.57 Aligned_cols=171 Identities=8% Similarity=-0.024 Sum_probs=99.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc-C-C
Q 015765 121 YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES-G-D 197 (401)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 197 (401)
..+.+..++|++++++++..+ +-+..+|+.--..+...| .++++++.++.+.... +-+..+|+.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 344555677888888887775 446667777666666667 4888888888877542 45556677666666555 5 7
Q ss_pred hhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChH--------HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC--
Q 015765 198 SSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYE--------DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR-- 267 (401)
Q Consensus 198 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-- 267 (401)
+++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +.|...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 777788887777653 335666665444444444444 5555555555543 2345555555555555443
Q ss_pred -----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 015765 268 -----SEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297 (401)
Q Consensus 268 -----~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 297 (401)
++++++.+++....... |...|+-+-..+
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFL 252 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34455555444443222 344444433333
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=4.1e-07 Score=69.98 Aligned_cols=131 Identities=8% Similarity=-0.062 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL 332 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (401)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666667777777777777766653 2256667777777777777777777777777643 33456677777777
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHHhc
Q 015765 333 CQGGEYETALKVCRASMAKGWVPHFSTMK--SLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
...|++++|...++++.+.. +.+...+. ..+..+.+.|++++|.+.++.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 78888888888888777653 23444443 3333366778888888887766544
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=5.2e-07 Score=69.38 Aligned_cols=92 Identities=10% Similarity=0.005 Sum_probs=41.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+...+...
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHh
Confidence 33344444444444444444444432 2234444444444444455555554444443321 22333444444444444
Q ss_pred CChhHHHHHHHHHHh
Q 015765 196 GDSSSVYSILAEMRR 210 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~ 210 (401)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444443
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.75 E-value=1.3e-05 Score=68.91 Aligned_cols=184 Identities=11% Similarity=-0.037 Sum_probs=137.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 015765 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQAN-MIDHAMQTFEEMDKYGLRQSVDALNALLLGC 156 (401)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (401)
+..+-......+..++|+++++.+.... |.+..+++.--.++...| .+++++++++.+.... +-+..+|+.-..++
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3333344445556678999999998432 334557777777777778 5999999999999887 56888898877777
Q ss_pred Hhc-C-CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 015765 157 ILS-K-NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS--------SVYSILAEMRRKSIRPNATDFGLLLAG 226 (401)
Q Consensus 157 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~ 226 (401)
.+. + ++++++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~l 210 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYL 210 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 766 6 8899999999998653 567778877666666666666 8999999998874 4588889888888
Q ss_pred HHccCC-------hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCH
Q 015765 227 FYKEHK-------YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRS 268 (401)
Q Consensus 227 ~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 268 (401)
+.+.++ ++++++.++++.... +.|...|+-+-..+.+.|+.
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 888876 678888888888764 45777787777766666653
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=5.6e-07 Score=66.23 Aligned_cols=121 Identities=9% Similarity=0.062 Sum_probs=79.2
Q ss_pred CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 015765 71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALN 150 (401)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (401)
.+.+...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 34456677777777777788888887777776332 3335667777777777777777777777777654 44566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC
Q 015765 151 ALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG 196 (401)
Q Consensus 151 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 196 (401)
.+..++...|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 77777777777777777777775441 223344555555554443
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=2.4e-07 Score=67.29 Aligned_cols=112 Identities=12% Similarity=0.171 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL 332 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (401)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555566666666666666666665542 2244555556666666666666666666655432 23444555555666
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765 333 CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
...|++++|...++++.+.. +.+...+..+..++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 66666666666666555543 22334444444333
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.73 E-value=1e-07 Score=74.49 Aligned_cols=123 Identities=9% Similarity=0.050 Sum_probs=90.9
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HhcCCCh--
Q 015765 227 FYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG-FGKEGNL-- 303 (401)
Q Consensus 227 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~-- 303 (401)
+...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 346678888888888887764 44667788888888888999999888888877632 256677777777 7778887
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765 304 EGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 304 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888753 2346677778888888888888888888888764
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.72 E-value=2.2e-06 Score=73.04 Aligned_cols=166 Identities=11% Similarity=-0.026 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HH
Q 015765 148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS----ETYNKVIKSFCESGDSSSVYSILAEMRRKSI---RPN--AT 218 (401)
Q Consensus 148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 218 (401)
.+...+..+...|++++|.+.+.+..+.....++. ..+..+...+...|++++|.+.+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34445556666777777777776654432111111 1122344445555666666666666554211 111 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-H
Q 015765 219 DFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASG-----VNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPN-L 287 (401)
Q Consensus 219 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~ 287 (401)
+++.+...|...|++++|...+++..+. ...++ ..++..+..+|...|++++|...+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5555566666666666666666555421 00111 134555555555666666666655554432 10001 3
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHHHH
Q 015765 288 DTYKHLIHGFGKEGNLEGA-KKLFASM 313 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a-~~~~~~m 313 (401)
.+|..+..+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4455555555555555555 4444443
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=4e-07 Score=66.70 Aligned_cols=89 Identities=8% Similarity=-0.050 Sum_probs=34.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
...|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++...|+
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCCC
Confidence 333444444444444444433332 2233334444444444444444444444433321 2223333344444444444
Q ss_pred hhHHHHHHHHHH
Q 015765 198 SSSVYSILAEMR 209 (401)
Q Consensus 198 ~~~a~~~~~~~~ 209 (401)
+++|.+.|++..
T Consensus 97 ~~~A~~~~~~al 108 (126)
T 4gco_A 97 WSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.72 E-value=7.3e-07 Score=64.63 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015765 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (401)
+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333334444444444444333322 223333333333333333444443333333
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=7e-08 Score=73.07 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=62.6
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY 330 (401)
Q Consensus 251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 330 (401)
+...+..+...+...|++++|...|++...... .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 344555566666667777777777776665532 255666666666667777777777777666542 224455666666
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 015765 331 FLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 667777777777777666654
No 134
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.71 E-value=1.9e-07 Score=70.75 Aligned_cols=97 Identities=14% Similarity=0.024 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL 332 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (401)
..+..+...+.+.|++++|...|++...... -+...|..+..+|...|++++|.+.|++..+.. +.+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 3455555556666666666666666655432 245556666666666666666666666665542 22344555566666
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 015765 333 CQGGEYETALKVCRASMAK 351 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~ 351 (401)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665554
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=5e-07 Score=75.05 Aligned_cols=137 Identities=9% Similarity=-0.096 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHc
Q 015765 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD--SYCFFMFTYFLCQ 334 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~ 334 (401)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 34455555666666666666555443 332234444445556666666666665443311 110 2245555666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765 335 GGEYETALKVCRASMAKGWVPH--FSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 335 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 397 (401)
.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....|. ...+.+|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 6666666666666653322132 234455555666666666666666666666555 4444443
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=6.2e-07 Score=65.98 Aligned_cols=118 Identities=7% Similarity=-0.073 Sum_probs=77.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHH
Q 015765 108 RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNK 187 (401)
Q Consensus 108 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 187 (401)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHH
Confidence 4445666777777777888888888888777654 4466777777777777778888887777776542 334566677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229 (401)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (401)
+...+.+.|++++|.+.|++..+.. +.+...+..+..++..
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 7777777777777777777766542 2233444444444443
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=1.6e-07 Score=79.56 Aligned_cols=95 Identities=11% Similarity=-0.039 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 015765 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC 263 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 263 (401)
.+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555555544431 2234444445555555555555555555554432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 015765 264 KLKRSEEAKALLDGMLS 280 (401)
Q Consensus 264 ~~~~~~~a~~~~~~~~~ 280 (401)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.70 E-value=1.9e-07 Score=74.67 Aligned_cols=156 Identities=9% Similarity=-0.060 Sum_probs=81.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CCchhHHHHHHHHHhcCC
Q 015765 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC----GIA-SGVNVYNIRIQSLCKLKR 267 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~ 267 (401)
...|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456777777744444321 1224455666666667777777777776665441 111 123445556666666677
Q ss_pred HHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHccC
Q 015765 268 SEEAKALLDGMLSR----GIKP--NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG---CEPD--SYCFFMFTYFLCQGG 336 (401)
Q Consensus 268 ~~~a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~~~~li~~~~~~g 336 (401)
+++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+.. -.+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77766666655442 1111 12345555666666666666666666654320 0111 122345555566666
Q ss_pred CHHHHHHHHHHHH
Q 015765 337 EYETALKVCRASM 349 (401)
Q Consensus 337 ~~~~a~~~~~~~~ 349 (401)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665554
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.69 E-value=1.2e-07 Score=80.22 Aligned_cols=97 Identities=12% Similarity=0.040 Sum_probs=57.8
Q ss_pred HhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 015765 75 RMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLL 154 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 154 (401)
...+..+...+.+.|++++|+..|++..... +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455556666666666666666666665321 2234556666666666666666666666666554 345556666666
Q ss_pred HHHhcCCHHHHHHHHHhchh
Q 015765 155 GCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~~ 174 (401)
++...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665543
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.6e-06 Score=72.00 Aligned_cols=188 Identities=10% Similarity=-0.094 Sum_probs=108.8
Q ss_pred cCCChhHHHHHhhhccCCCCCCccHhHHHHH-------HHHHHhCCCchHHHHHHHHhhhC-----------CCC-----
Q 015765 51 SESNPFRILDICCGASLAPESPLDRMAFSIA-------VSKLSQANHFNAISQLLEELKTR-----------PDL----- 107 (401)
Q Consensus 51 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~-----------~~~----- 107 (401)
..+++..|.+.|..+... .|.....|..+ ...+.+.++..+++..+..-... .+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 467788888888777644 22245566666 34555555555555544443310 000
Q ss_pred ---CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---
Q 015765 108 ---RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN--- 181 (401)
Q Consensus 108 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 181 (401)
..-..+.......+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+ .|+
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~ 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFL 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCccc
Confidence 0002233445566667777777777777776543 3332555555667777777777777765532 122
Q ss_pred -HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 015765 182 -SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 182 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 246 (401)
...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23556666677777777777777777664322132 234555556666777777777777777665
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=9.1e-07 Score=64.73 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 015765 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG 155 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 155 (401)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344444444444444444444444443211 1123334444444444444444444444444332 2233344444444
Q ss_pred HHhcCCHHHHHHHHHhch
Q 015765 156 CILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~ 173 (401)
+...|++++|...|++..
T Consensus 90 ~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 444444444444444443
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=7.7e-07 Score=65.13 Aligned_cols=120 Identities=8% Similarity=-0.081 Sum_probs=97.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHH
Q 015765 110 NERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVI 189 (401)
Q Consensus 110 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 189 (401)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence 35567778888889999999999999988765 4578888888999999999999999999987652 44567888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCCh
Q 015765 190 KSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKY 233 (401)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 233 (401)
..+.+.|++++|.+.|++..+.. +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999987763 34667777788888777764
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=5.1e-07 Score=72.10 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh---cCCCC--C
Q 015765 112 RFHVHSIVLYGQANMIDHAMQTFEEMDK----YGL-RQSVDALNALLLGCILSKNYEEVKRIFTEFPKV---YGIEP--N 181 (401)
Q Consensus 112 ~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~ 181 (401)
..+..+...+...|++++|...+++..+ .+. .....++..+...+...|++++|...+++..+. .+..+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444555555444444333 110 112233444444445555555555554444322 11011 1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCC--HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 015765 182 SETYNKVIKSFCESGDSSSVYSILAEMRRKS---IRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 182 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (401)
...+..+...+...|++++|...+++..... ..+. ..++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2234444445555555555555554443210 0000 1223444455555555555555555443
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.65 E-value=5.3e-07 Score=64.67 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765 288 DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 288 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344444555555555555555555555432 2234445555555555555666655555555543 23445555555555
Q ss_pred HccCCHHHHHHHHHHHHhcCCCCcccc
Q 015765 368 ASISKVAEANELIGLMKKRFPKSGDMW 394 (401)
Q Consensus 368 ~~~g~~~~a~~~~~~~~~~~~~~~~~~ 394 (401)
...|++++|.+.+++..+..|.+...|
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 566666666666666555555544433
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.64 E-value=5.4e-07 Score=70.37 Aligned_cols=120 Identities=8% Similarity=0.008 Sum_probs=54.0
Q ss_pred HhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH--
Q 015765 86 SQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLG-CILSKNY-- 162 (401)
Q Consensus 86 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 162 (401)
...|++++|+..++...... +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 34455555555555544221 2223445555555555555555555555554433 2344444444444 4444554
Q ss_pred HHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765 163 EEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 163 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
++|...+++..+.. +.+...+..+...+...|++++|...|++..+
T Consensus 98 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555554331 22234444444455555555555555555444
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.4e-07 Score=66.99 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (401)
|..+...+.+.|++++|.+.|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 1233444444444444455555555444444432 2234444444444445
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 015765 370 ISKVAEANELIGLMKKRF 387 (401)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~ 387 (401)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 555555555555444443
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=7e-07 Score=63.39 Aligned_cols=103 Identities=17% Similarity=0.030 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 015765 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP--HFSTMKSLV 364 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 364 (401)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455566666777777777777777776643 2345667777777778888888888888777663 33 567777788
Q ss_pred HHHHcc-CCHHHHHHHHHHHHhcCCCCc
Q 015765 365 TGLASI-SKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 365 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 391 (401)
.++.+. |++++|.+.+++..+..|.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888888888888887766543
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=5.6e-07 Score=69.34 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=78.3
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY 330 (401)
Q Consensus 251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 330 (401)
+...+..+...+.+.|++++|...|++..+... -+...|..+..+|...|++++|.+.+++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345677777888888888888888888887642 267778888888888888888888888888753 334677888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCC
Q 015765 331 FLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
+|...|++++|.+.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887763
No 149
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=1.8e-05 Score=72.40 Aligned_cols=306 Identities=8% Similarity=-0.080 Sum_probs=174.6
Q ss_pred CCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CC-CCCHH
Q 015765 71 SPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM-IDHAMQTFEEMDKY-GL-RQSVD 147 (401)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~ 147 (401)
+..-..+|...+..+-. |+++.+.++|+..... .| +...|..-+....+.+. .+....+|+..... |. ..+..
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~ 86 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYG 86 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHH
Confidence 44567789999988866 8899999999998842 23 57788888877776663 46677888877653 42 34778
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHhchhhcCCCCCH--HhHHHHHHHHHh-------------cCChhHHHHHHHHH
Q 015765 148 ALNALLLGCI----LSKNYEEVKRIFTEFPKVYGIEPNS--ETYNKVIKSFCE-------------SGDSSSVYSILAEM 208 (401)
Q Consensus 148 ~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-------------~~~~~~a~~~~~~~ 208 (401)
.|...+..+. ..++.+.+..+|++..+. ++.. ..|......-.. .+.+..|..+++.+
T Consensus 87 iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~ 163 (493)
T 2uy1_A 87 LYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI 163 (493)
T ss_dssp HHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888887654 346788899999999752 3321 122222221111 11233344555544
Q ss_pred HhCCCCCCHHhHHHHHHHHHccC--C-----hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765 209 RRKSIRPNATDFGLLLAGFYKEH--K-----YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 209 ~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
...--..+...|...+.--...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.++|..++++....
T Consensus 164 ~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 32100113345555555432221 1 345677888888763 556778888888889999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC---------CCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765 282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG---------GCEP---DSYCFFMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
+.+...|...... .. .++. ++.+.+. +..+ ....|...+..+.+.++.+.|..+|+++
T Consensus 243 --P~~~~l~~~y~~~-~e---~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A- 312 (493)
T 2uy1_A 243 --SDGMFLSLYYGLV-MD---EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL- 312 (493)
T ss_dssp --CCSSHHHHHHHHH-TT---CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-
T ss_pred --CCcHHHHHHHHhh-cc---hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 2233333221111 11 1111 1111110 0001 1234555556555666777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCCCcccch
Q 015765 350 AKGWVPHFSTMKSLVTGLASI-SKVAEANELIGLMKKRFPKSGDMWN 395 (401)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~ 395 (401)
... ..+..+|...+..-... ++.+.|..+|+...+.+|.+...|.
T Consensus 313 ~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~ 358 (493)
T 2uy1_A 313 GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKE 358 (493)
T ss_dssp TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 221 12334443322222222 3577777777777777666554443
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=5.2e-07 Score=67.66 Aligned_cols=97 Identities=10% Similarity=-0.073 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765 253 NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFL 332 (401)
Q Consensus 253 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (401)
..+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3444555566666666666666666665532 245566666666666666666666666666543 23345556666666
Q ss_pred HccCCHHHHHHHHHHHHHC
Q 015765 333 CQGGEYETALKVCRASMAK 351 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~ 351 (401)
...|++++|.+.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666554
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.60 E-value=9.5e-07 Score=76.84 Aligned_cols=124 Identities=10% Similarity=-0.104 Sum_probs=63.4
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------chhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 015765 216 NATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG--------------VNVYNIRIQSLCKLKRSEEAKALLDGMLSR 281 (401)
Q Consensus 216 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 281 (401)
+...+..+...+.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666777777777888888877777776532111 244444445555555555555555554443
Q ss_pred CCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 015765 282 GIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETA 341 (401)
Q Consensus 282 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (401)
.. .+...|..+..+|...|++++|.+.|++.++.. +.+...+..+..++...|+.++|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 134444444444445555555555554444431 11233444444444444444444
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.58 E-value=1e-06 Score=66.54 Aligned_cols=99 Identities=7% Similarity=-0.049 Sum_probs=66.2
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+...+..+...+...|++++|+..|+...... |.+...+..+..+|...|++++|+..|++..+.. +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 45566666677777777777777777766322 3335566667777777777777777777776654 44556666677
Q ss_pred HHHHhcCCHHHHHHHHHhchhh
Q 015765 154 LGCILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~ 175 (401)
.+|...|++++|...|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777776554
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.1e-06 Score=64.43 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 015765 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD----SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKS 362 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 362 (401)
...+..+...+...|++++|.+.|++..+. .|+ ...+..+...|...|++++|...+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344444444444555555555555554443 233 3344444445555555555555555544432 223444445
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765 363 LVTGLASISKVAEANELIGLMKKRFPKSGDM 393 (401)
Q Consensus 363 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (401)
+..+|...|++++|.+.+++..+..|.+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 5555555555555555555555544444433
No 154
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.53 E-value=2.8e-06 Score=73.88 Aligned_cols=123 Identities=7% Similarity=-0.020 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhhc
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS--------------VDALNALLLGCILSKNYEEVKRIFTEFPKVY 176 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 176 (401)
...+..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566666667777777777777777666531111 3455555555555555555555555554432
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHH
Q 015765 177 GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDV 236 (401)
Q Consensus 177 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 236 (401)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555555555555555554432 22344444555555555555544
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=1.1e-06 Score=65.17 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=57.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 015765 251 GVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTY 330 (401)
Q Consensus 251 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 330 (401)
+...+..+...+...|++++|...|++...... .+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 345555566666666666666666666655432 245556666666666666666666666665542 223455555666
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 015765 331 FLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~ 351 (401)
++...|++++|...++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666666666666655543
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=3.7e-05 Score=69.21 Aligned_cols=198 Identities=9% Similarity=0.003 Sum_probs=98.8
Q ss_pred HHHHHhCCCchHHHHHHHHhhhCCCCCCch---------------hHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCC
Q 015765 82 VSKLSQANHFNAISQLLEELKTRPDLRQNE---------------RFHVHSIVLYGQANMIDHAMQTFEEMDKYG-LRQS 145 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 145 (401)
...+.+.|++++|++.|..+........+. ..+..+...|...|++++|.+.+..+...- -.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455667777778877777776433222211 124556666666677777766666654321 0111
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHhchhhc---CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCC-
Q 015765 146 VD----ALNALLLGCILSKNYEEVKRIFTEFPKVY---GIEPN-SETYNKVIKSFCESGDSSSVYSILAEMRRK--SIR- 214 (401)
Q Consensus 146 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~- 214 (401)
.. +.+.+-..+...|+.+.|..+++...... +..+. ..++..+...|...|++++|..+++++... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 12222223334566666666666553321 11111 234555666666666666666666665432 111
Q ss_pred -C-CHHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCC-C-C--chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765 215 -P-NATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIA-S-G--VNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 215 -~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1234555556666666666666666555331 111 1 1 1233444444555566666655555443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=3.9e-07 Score=72.72 Aligned_cols=120 Identities=15% Similarity=-0.023 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC--------------HHhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 015765 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIR-PN--------------ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (401)
.+..+...+.+.|++++|.+.|++....... ++ ...+..+..++...|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3445555555566666666666655543110 00 1344444444555555555555555544432
Q ss_pred CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHH
Q 015765 249 ASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEG 305 (401)
Q Consensus 249 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 305 (401)
+.+...+..+..+|...|++++|...|++..+... -+...+..+..++...++.++
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 22334444444555555555555555554444321 123344444444433333333
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=4.3e-06 Score=60.97 Aligned_cols=93 Identities=11% Similarity=-0.013 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
+......+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 3334444444555555555555444433 2344444444555555555555555555444331 223334444444455
Q ss_pred hcCChhHHHHHHHHHH
Q 015765 194 ESGDSSSVYSILAEMR 209 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~ 209 (401)
..|++++|.+.|++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 5555555555554443
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=7.2e-07 Score=71.12 Aligned_cols=154 Identities=11% Similarity=-0.017 Sum_probs=85.1
Q ss_pred hcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCC---c-----------hhHHH
Q 015765 50 KSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQ---N-----------ERFHV 115 (401)
Q Consensus 50 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~-----------~~~~~ 115 (401)
...++++.+.+.+...... .......+..+...+...|++++|+..|++........+ . ..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3445556666555433211 122345677777888888999999998888874221111 0 14566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.+..+|...|++++|+..++...+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHH
Confidence 66666777777777777777766654 4456666667777777777777777777765442 23444555555555555
Q ss_pred CChhHHH-HHHHHH
Q 015765 196 GDSSSVY-SILAEM 208 (401)
Q Consensus 196 ~~~~~a~-~~~~~~ 208 (401)
++.+++. ..+..+
T Consensus 170 ~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 170 KEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHC---------
T ss_pred HHHHHHHHHHHHHH
Confidence 5555444 334433
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.51 E-value=8.6e-06 Score=58.14 Aligned_cols=94 Identities=10% Similarity=-0.056 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 3334444444445555555444444432 2234444444444444455555555544443321 222334444444444
Q ss_pred hcCChhHHHHHHHHHHh
Q 015765 194 ESGDSSSVYSILAEMRR 210 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~ 210 (401)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 44555555554444443
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=3.9e-06 Score=64.49 Aligned_cols=102 Identities=10% Similarity=0.050 Sum_probs=81.2
Q ss_pred CccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 015765 72 PLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNA 151 (401)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (401)
+.+...|..+...+.+.|++++|++.|++..... +.+...+..+..+|...|++++|+..|++..+.. +.+...|..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3456678888888888999999999888887432 3346678888888888899999999998888775 456788888
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhhc
Q 015765 152 LLLGCILSKNYEEVKRIFTEFPKVY 176 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~~ 176 (401)
+..+|...|++++|...|++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8888888899999998888887653
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.8e-06 Score=73.69 Aligned_cols=198 Identities=11% Similarity=-0.042 Sum_probs=132.3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKYGLRQS----------------VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN 181 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 181 (401)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567788999999999999887542221 124667888888999999999998888654333333
Q ss_pred HH----hHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCC-
Q 015765 182 SE----TYNKVIKSFCESGDSSSVYSILAEMRR----KSIRPN-ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIA- 249 (401)
Q Consensus 182 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~- 249 (401)
.. +.+.+-..+...|+++.|.++++.... .+..+. ..++..+...+...|++++|..+++.+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 32 222333334456788888888877643 222222 446677888888888888888888877543 111
Q ss_pred --CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765 250 --SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR----GIKPN--LDTYKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 250 --~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
....++..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12356777788888888888888888876543 11111 24456666777788888888888877765
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.48 E-value=2.4e-06 Score=60.55 Aligned_cols=95 Identities=14% Similarity=0.023 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC--CHHhHHHHHH
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP--NSETYNKVIK 190 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 190 (401)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 33444444445555555555555544433 2334444444445555555555555555444321 11 2344444444
Q ss_pred HHHhc-CChhHHHHHHHHHHh
Q 015765 191 SFCES-GDSSSVYSILAEMRR 210 (401)
Q Consensus 191 ~~~~~-~~~~~a~~~~~~~~~ 210 (401)
.+.+. |++++|.+.+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44555 555555555554443
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.5e-06 Score=63.06 Aligned_cols=99 Identities=9% Similarity=-0.044 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 015765 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS 369 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 369 (401)
+..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344555666677777777777766542 2345566666666777777777777777766654 3355666667777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 015765 370 ISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 370 ~g~~~~a~~~~~~~~~~~~~~ 390 (401)
.|++++|...+++..+..|.+
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777776655543
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=2.7e-06 Score=63.65 Aligned_cols=59 Identities=5% Similarity=-0.070 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (401)
.+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++.
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333333334444444444444333332 222333333333333344444444443333
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=3.3e-06 Score=61.76 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCC----HhhHHHHHH
Q 015765 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNL---DTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPD----SYCFFMFTY 330 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~ 330 (401)
+...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...+++..+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 444555556666666666655554211 11 344455555555566666666665555432 22 334445555
Q ss_pred HHHccCCHHHHHHHHHHHHHC
Q 015765 331 FLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~ 351 (401)
++...|++++|...++++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555544
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=4.9e-06 Score=60.90 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcC-CCCC----HHhHHHH
Q 015765 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYG-IEPN----SETYNKV 188 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~l 188 (401)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..+... ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444555555555666665555555543 33455555555555555666665555555543210 0000 1234444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 015765 189 IKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=3.7e-06 Score=61.42 Aligned_cols=97 Identities=6% Similarity=0.062 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCC-CCC----HHhHHH
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGI-EPN----SETYNK 187 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~ 187 (401)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+...- .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554443 334444555555555555555555555554432100 011 334444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 015765 188 VIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
+...+.+.|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=9.5e-06 Score=59.99 Aligned_cols=92 Identities=5% Similarity=-0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 12 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 12 LKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHH
Confidence 3333333444444444444444433332 2233333344444444444444444444433221 122333333334444
Q ss_pred hcCChhHHHHHHHHH
Q 015765 194 ESGDSSSVYSILAEM 208 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~ 208 (401)
..|++++|...|++.
T Consensus 89 ~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 89 EMESYDEAIANLQRA 103 (137)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 444444444444333
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.7e-05 Score=59.31 Aligned_cols=110 Identities=12% Similarity=-0.026 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 015765 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPN----LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFM 327 (401)
Q Consensus 252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 327 (401)
...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|.+.+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 445555666666666666666666666654 233 4556666666667777777777777666542 224556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015765 328 FTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT 365 (401)
Q Consensus 328 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (401)
+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 6667777777777777777766553 223344433333
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.38 E-value=4e-06 Score=61.26 Aligned_cols=113 Identities=9% Similarity=0.115 Sum_probs=88.8
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL--RQS----VD 147 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~ 147 (401)
....|..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+... .++ ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 34577888889999999999999999988432 33467888889999999999999999999877531 112 77
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHH
Q 015765 148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKS 191 (401)
Q Consensus 148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (401)
++..+..++...|++++|.+.|++..+. .|+......+...
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 8888899999999999999999999765 4566555544443
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.37 E-value=7.8e-06 Score=59.78 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=21.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015765 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 278 (401)
+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3333444444444444444443332 122333333444444444444444444433
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.35 E-value=0.00065 Score=58.09 Aligned_cols=95 Identities=7% Similarity=0.011 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC-hhHHHH
Q 015765 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK--NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD-SSSVYS 203 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~ 203 (401)
+++++.+++.+.... +-+..+|+.-..++...+ .+++++.+++.+.+.. +.|..+|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 345555555555443 334555555444444444 2555555555554432 3344445444444444444 345555
Q ss_pred HHHHHHhCCCCCCHHhHHHHHH
Q 015765 204 ILAEMRRKSIRPNATDFGLLLA 225 (401)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~ll~ 225 (401)
.++++.+.. +-|...|+....
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ 187 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHH
Confidence 555554442 224444444333
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=3.2e-05 Score=56.38 Aligned_cols=95 Identities=12% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhh-CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHH
Q 015765 80 IAVSKLSQANHFNAISQLLEELKT-RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQS---VDALNALLLG 155 (401)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 155 (401)
.+...+...|++++|...|+.+.. .|+.+.....+..+..++...|++++|...|+...+.. +.+ ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 344555666666666666666653 23222112455555666666666666666666665543 222 4455556666
Q ss_pred HHhcCCHHHHHHHHHhchhh
Q 015765 156 CILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 156 ~~~~~~~~~a~~~~~~~~~~ 175 (401)
+...|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666544
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=0.0002 Score=61.25 Aligned_cols=139 Identities=9% Similarity=-0.062 Sum_probs=84.8
Q ss_pred HhcCChH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765 122 GQANMID-HAMQTFEEMDKYGLRQSVDALNALLLGCILSKN----------YEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 122 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
.+.|.++ +|+++++.++..+ +-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3555554 7888888888765 4455666654444333332 566777777776543 445666666666
Q ss_pred HHHhcC--ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc
Q 015765 191 SFCESG--DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK-YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL 265 (401)
Q Consensus 191 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 265 (401)
.+.+.+ ++++++++++++.+.. +-|...|+.-.-.+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 666666 3677777777777653 3466666666666666666 467777777776664 34555666555555443
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=1e-06 Score=63.51 Aligned_cols=86 Identities=17% Similarity=0.216 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765 265 LKRSEEAKALLDGMLSRGI--KPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL 342 (401)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (401)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|.+.+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665431 1134556666666666667777766666666543 223555666666666666666666
Q ss_pred HHHHHHHHC
Q 015765 343 KVCRASMAK 351 (401)
Q Consensus 343 ~~~~~~~~~ 351 (401)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=9.5e-06 Score=61.64 Aligned_cols=133 Identities=9% Similarity=-0.011 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhhhC----CCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----H
Q 015765 76 MAFSIAVSKLSQANHFNAISQLLEELKTR----PDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR-QS----V 146 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 146 (401)
.++..+...+...|++++|+..+++.... ++.......+..+...+...|++++|.+.+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45666667777777777777777766521 111111235555666666777777777766665432100 01 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765 147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
..+..+...+...|++++|.+.+++..+...-..+ ..++..+...+...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34455555566666666666666555432100111 123444445555555555555555544
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=8.3e-06 Score=59.04 Aligned_cols=93 Identities=6% Similarity=-0.021 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 015765 78 FSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCI 157 (401)
Q Consensus 78 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 157 (401)
+..+...+.+.|++++|+..|+...... |.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3334444455555555555555544211 2223344445555555555555555555554443 234444445555555
Q ss_pred hcCCHHHHHHHHHhch
Q 015765 158 LSKNYEEVKRIFTEFP 173 (401)
Q Consensus 158 ~~~~~~~a~~~~~~~~ 173 (401)
..|++++|+..|++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 97 NEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.28 E-value=3.7e-06 Score=64.00 Aligned_cols=132 Identities=11% Similarity=-0.003 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHhcCCChHHHHHHHHHHHhC----CCCC-CHhh
Q 015765 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIK-PN----LDTYKHLIHGFGKEGNLEGAKKLFASMTNG----GCEP-DSYC 324 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~ 324 (401)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444555555555555555544432100 01 134455555566666666666666554432 1000 1234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 015765 325 FFMFTYFLCQGGEYETALKVCRASMAK----GWV-PHFSTMKSLVTGLASISKVAEANELIGLMKKR 386 (401)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 386 (401)
+..+...+...|++++|.+.+++..+. +.. .....+..+...|...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555666666777777777777665543 111 11345666777777888888888888877654
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.26 E-value=3.4e-06 Score=60.69 Aligned_cols=87 Identities=6% Similarity=-0.148 Sum_probs=52.4
Q ss_pred CCCchHHHHHHHHhhhCC-CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015765 88 ANHFNAISQLLEELKTRP-DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVK 166 (401)
Q Consensus 88 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 166 (401)
.|++++|+..|++..... ..+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466667777776666321 113335566666666777777777777777766654 345666666666777777777777
Q ss_pred HHHHhchhh
Q 015765 167 RIFTEFPKV 175 (401)
Q Consensus 167 ~~~~~~~~~ 175 (401)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666554
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.25 E-value=5.9e-06 Score=63.34 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------Cc-CHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 015765 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSR--------GI--------KP-NLDTYKHLIHGFGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 314 (401)
...+......+.+.|++++|...|.+.... .. .| +...|..+..+|.+.|++++|...+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666667777778888888888776653 00 11 23456666666666777777777776666
Q ss_pred hCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765 315 NGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 234556666666677777777777777666655
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=3.8e-06 Score=76.68 Aligned_cols=119 Identities=12% Similarity=0.091 Sum_probs=70.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChH
Q 015765 225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304 (401)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 304 (401)
..+.+.|++++|.+.+++..+.. +.+...+..+..+|.+.|++++|...+++..+... -+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777777776653 33456666777777777777777777777766532 24566666667777777777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH--HHccCCHHHHHHHHH
Q 015765 305 GAKKLFASMTNGGCEPDSYCFFMFTYF--LCQGGEYETALKVCR 346 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 346 (401)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777766542 1122334444333 566666666666665
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.00016 Score=67.28 Aligned_cols=160 Identities=15% Similarity=0.162 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC-
Q 015765 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKR----------SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG- 301 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~- 301 (401)
.++|++.++.+...+ +.+..+|+.--.++...|+ ++++...++.+.+...+ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356677777776654 2344556555555555555 78888888888776544 6677777767777777
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---------
Q 015765 302 -NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG-EYETALKVCRASMAKGWVPHFSTMKSLVTGLASI--------- 370 (401)
Q Consensus 302 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 370 (401)
+++++++.++++.+.. .-|...|+.-...+.+.| .++++.+.++++++.. +-+...|+....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 6688888888888764 346677777777777777 7888888888888765 44677777766666542
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 371 -----SKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 371 -----g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+.++++++.+++..+..|.|...|+-
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 56799999999999999999988874
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=1e-05 Score=73.87 Aligned_cols=121 Identities=7% Similarity=0.025 Sum_probs=90.9
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765 81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK 160 (401)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (401)
+...+.+.|++++|++.|++..... +.+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445567899999999999887432 3346788889999999999999999999998875 557888888999999999
Q ss_pred CHHHHHHHHHhchhhcCCCCCHHhHHHHHHH--HHhcCChhHHHHHHH
Q 015765 161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKS--FCESGDSSSVYSILA 206 (401)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 206 (401)
++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999987653 2233445555555 778899999999988
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.12 E-value=8.6e-06 Score=70.80 Aligned_cols=153 Identities=10% Similarity=-0.022 Sum_probs=82.8
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 015765 217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHG 296 (401)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 296 (401)
...+..+...+.+.|++++|...|++..... |+.. .+...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5567777888889999999999999887753 3322 1222333333332221 1367778888
Q ss_pred HhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHH
Q 015765 297 FGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGL-ASISKVAE 375 (401)
Q Consensus 297 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 375 (401)
|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+.... ...+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888753 3356788888899999999999999999887653 22344455555442 34566778
Q ss_pred HHHHHHHHHhcCCCC
Q 015765 376 ANELIGLMKKRFPKS 390 (401)
Q Consensus 376 a~~~~~~~~~~~~~~ 390 (401)
+.++|..+....|.+
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888888888776544
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=4e-05 Score=69.61 Aligned_cols=124 Identities=12% Similarity=-0.048 Sum_probs=74.9
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--------------chhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 015765 217 ATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG--------------VNVYNIRIQSLCKLKRSEEAKALLDGMLSRG 282 (401)
Q Consensus 217 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 282 (401)
...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45666777778888888888888887776431111 3556666666666666666666666666553
Q ss_pred CCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 015765 283 IKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETAL 342 (401)
Q Consensus 283 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (401)
. .+...|..+..+|...|++++|...|++.++.. +-+...+..+..++...++.+++.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 245566666666666666666666666666542 123345555555566666555554
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=5.4e-05 Score=68.73 Aligned_cols=86 Identities=6% Similarity=-0.045 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 015765 184 TYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLC 263 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 263 (401)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 44444444555555555555555544432 2234444445555555555555555555554432 223344444444454
Q ss_pred hcCCHHHH
Q 015765 264 KLKRSEEA 271 (401)
Q Consensus 264 ~~~~~~~a 271 (401)
+.++.+++
T Consensus 397 ~~~~~~~a 404 (457)
T 1kt0_A 397 KAKEHNER 404 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44544444
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=4.2e-05 Score=67.29 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CCC-cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCC
Q 015765 255 YNIRIQSLCKLKRSEEAKALLDGMLSR--------------GIK-PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCE 319 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 319 (401)
+..+...+.+.|++++|...|++..+. ... .+...|..+..+|.+.|++++|.+.+++.++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 444455555556666666665555441 011 134677778888888888888888888888753 3
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 015765 320 PDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANE 378 (401)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 378 (401)
.+...|..+..+|...|++++|.+.++++.+.. +.+...+..+..++...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888888764 3356667777777777776666554
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.07 E-value=6.5e-05 Score=57.39 Aligned_cols=61 Identities=13% Similarity=0.003 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765 148 ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 148 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
.|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++...
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34444444444444444444444444321 22333444444444444444444444444443
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=2.7e-05 Score=58.41 Aligned_cols=100 Identities=11% Similarity=0.006 Sum_probs=61.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHhCCCCCC-------------HhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CC
Q 015765 292 HLIHGFGKEGNLEGAKKLFASMTNGGCEPD-------------SYCFFMFTYFLCQGGEYETALKVCRASMAK-----GW 353 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~ 353 (401)
.....+.+.|++++|.+.|++.++. .|+ ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344445555556665555555543 122 126666677777777777777777777664 11
Q ss_pred CC-CHHHH----HHHHHHHHccCCHHHHHHHHHHHHhcCCCCccc
Q 015765 354 VP-HFSTM----KSLVTGLASISKVAEANELIGLMKKRFPKSGDM 393 (401)
Q Consensus 354 ~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 393 (401)
.| +...| .....++...|++++|+..|++..+..|.|...
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 23 34556 677777777888888888888877776655443
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.05 E-value=4.8e-05 Score=66.88 Aligned_cols=137 Identities=7% Similarity=0.009 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 192 (401)
.+..+...+.+.|++++|++.|++.++.- +... .....+++. ... +.+..+|..+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~~~~----~~~-----~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDADGA----KLQ-----PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHHHHG----GGH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChHHHH----HHH-----HHHHHHHHHHHHHH
Confidence 35556666777777777777777766520 0000 000000000 000 11233455555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHH
Q 015765 193 CESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAK 272 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 272 (401)
.+.|++++|++.+++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 2234455555555555555555555555555442 223444444444544444444443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.02 E-value=4.3e-05 Score=69.48 Aligned_cols=62 Identities=15% Similarity=0.025 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhh------hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHH
Q 015765 76 MAFSIAVSKLSQANHFNAISQLLEELK------TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEM 137 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 137 (401)
.+++.+...|...|++++|..++++.. -.++.|.....++.|...|...|++++|+.++++.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555555555555555554444433 01222222334444444444455555544444443
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=4.8e-05 Score=69.19 Aligned_cols=88 Identities=11% Similarity=-0.035 Sum_probs=44.4
Q ss_pred HHhCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCC--CCCHHHHHH
Q 015765 85 LSQANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-----YGL--RQSVDALNA 151 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~ 151 (401)
+...|++++|+.++++... .+..+....+++.+..+|...|++++|+.++++.++ .|. +....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655541 111122234555555666666666666666555443 120 112334555
Q ss_pred HHHHHHhcCCHHHHHHHHHhc
Q 015765 152 LLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~ 172 (401)
|...|...|++++|+.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555566666555555544
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=3.9e-05 Score=66.67 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765 252 VNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF 331 (401)
Q Consensus 252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 331 (401)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666666777778888888888776654 233221 223344444332221 1378888999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchhc
Q 015765 332 LCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNAA 397 (401)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 397 (401)
|.+.|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+..|.+...+..|
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L 304 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999875 45788999999999999999999999999999888877766543
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.93 E-value=0.00078 Score=62.70 Aligned_cols=173 Identities=6% Similarity=-0.038 Sum_probs=115.9
Q ss_pred chHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765 91 FNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM----------IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK 160 (401)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (401)
-++|++.++.+.... |.+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677777776322 2223455555555555555 788888888887766 457777777777777777
Q ss_pred --CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-------
Q 015765 161 --NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESG-DSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE------- 230 (401)
Q Consensus 161 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~------- 230 (401)
+++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 6688888888887654 556677777766677777 7778888888777653 33666676665555442
Q ss_pred -------CChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765 231 -------HKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE 270 (401)
Q Consensus 231 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 270 (401)
+.++++.+.+++..... +.+...|+..-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45678888888887764 4567778877777777666443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=8.4e-06 Score=57.69 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-------HH
Q 015765 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH-------FS 358 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 358 (401)
+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34556666666677777777777777766542 2345566666777777777777777777776543 33 33
Q ss_pred HHHHHHHHHHccCCHHHHHH
Q 015765 359 TMKSLVTGLASISKVAEANE 378 (401)
Q Consensus 359 ~~~~l~~~~~~~g~~~~a~~ 378 (401)
.+..+..++...|+.+.|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 44444455555454444433
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.90 E-value=0.00059 Score=50.43 Aligned_cols=87 Identities=10% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhc----CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-
Q 015765 260 QSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGK----EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQ- 334 (401)
Q Consensus 260 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~- 334 (401)
..|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..+...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33333344444444444444433 33444444444443 444555555555544432 23334444444444
Q ss_pred ---cCCHHHHHHHHHHHHHCC
Q 015765 335 ---GGEYETALKVCRASMAKG 352 (401)
Q Consensus 335 ---~g~~~~a~~~~~~~~~~~ 352 (401)
.++.++|.+++++..+.|
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555555444
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.0006 Score=50.37 Aligned_cols=109 Identities=8% Similarity=-0.024 Sum_probs=48.1
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHh----cCChhHH
Q 015765 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCE----SGDSSSV 201 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 201 (401)
++++|++.|++..+.| .++.. +...|...+.+++|.+.|++..+. -+...+..+...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3445555555554444 22222 333344444444455555444321 233444444444444 4445555
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHc
Q 015765 202 YSILAEMRRKSIRPNATDFGLLLAGFYK----EHKYEDVGKVLQMMEKC 246 (401)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 246 (401)
+++|++..+.| +...+..+...|.. .++.++|...|++..+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555444433 33334444444443 44444444444444443
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=0.00028 Score=52.90 Aligned_cols=93 Identities=6% Similarity=-0.041 Sum_probs=43.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHhchhh----cCCCC
Q 015765 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQ------S-----VDALNALLLGCILSKNYEEVKRIFTEFPKV----YGIEP 180 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 180 (401)
.....+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++..+. ..+.|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 33444455556666666655555432110 1 124555555555555555555555554432 00122
Q ss_pred C-HHhH----HHHHHHHHhcCChhHHHHHHHHH
Q 015765 181 N-SETY----NKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 181 ~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
+ ...| .....++...|++++|+..|++.
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 2 2334 44444455555555555555444
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=0.00013 Score=51.88 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 015765 93 AISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 93 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 172 (401)
.|++.|++..... +.+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555554221 2334556666666666666666666666666554 334556666666666666666666666665
Q ss_pred hh
Q 015765 173 PK 174 (401)
Q Consensus 173 ~~ 174 (401)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.77 E-value=3.3e-05 Score=54.54 Aligned_cols=60 Identities=7% Similarity=-0.004 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
.+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|++.+++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34444445555555555555555554443 3344455555555555555555555555554
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=0.0004 Score=46.63 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765 114 HVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 114 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233444444444444444444444444443
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00025 Score=50.45 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
.|...|++..+... .+...+..+...|...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777776532 356778888888888888888888888887653 3346677778888888888888888888776
Q ss_pred HC
Q 015765 350 AK 351 (401)
Q Consensus 350 ~~ 351 (401)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.75 E-value=0.00014 Score=50.44 Aligned_cols=62 Identities=10% Similarity=-0.084 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344455555555555555555555555443 2234445555555555555555555555443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00022 Score=48.00 Aligned_cols=80 Identities=10% Similarity=0.221 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 015765 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTG 366 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 366 (401)
...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666666542 2244555666666666666666666666666543 2344445444444
Q ss_pred HH
Q 015765 367 LA 368 (401)
Q Consensus 367 ~~ 368 (401)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.65 E-value=5.2e-05 Score=56.76 Aligned_cols=86 Identities=6% Similarity=-0.008 Sum_probs=45.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCCh----------HHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 015765 264 KLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL----------EGAKKLFASMTNGGCEPDSYCFFMFTYFLC 333 (401)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (401)
+.+.+++|.+.++...+.... +...|+.+..++...+++ ++|+..|++.++.. +-+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 445566666666666665322 556666666666655543 35555555555432 113344555555555
Q ss_pred ccC-----------CHHHHHHHHHHHHHC
Q 015765 334 QGG-----------EYETALKVCRASMAK 351 (401)
Q Consensus 334 ~~g-----------~~~~a~~~~~~~~~~ 351 (401)
..| ++++|.+.|+++++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 442 455555555555543
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=0.00041 Score=51.94 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=54.7
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHhchhhcCCCCCHHhHHHHHHHH
Q 015765 123 QANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNY----------EEVKRIFTEFPKVYGIEPNSETYNKVIKSF 192 (401)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 192 (401)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+.. +.+..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 4455666666666666654 44666666666666655543 46666666665442 22344566666666
Q ss_pred HhcC-----------ChhHHHHHHHHHHhCCCCCCHHhHHHHH
Q 015765 193 CESG-----------DSSSVYSILAEMRRKSIRPNATDFGLLL 224 (401)
Q Consensus 193 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 224 (401)
...| ++++|.+.|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 6553 566666666666553 44444443333
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.43 E-value=0.0009 Score=46.14 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+...+..+...|...|++++|.+.|++.++.. +.+...|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56777888888888888888888888888754 234567888888888888888888888877654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.20 E-value=0.0014 Score=44.93 Aligned_cols=86 Identities=9% Similarity=0.103 Sum_probs=58.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 015765 293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSY-CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASIS 371 (401)
Q Consensus 293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 371 (401)
....+...|++++|.+.+++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.. +.+...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence 4456677889999999998888753 23456 77888888888899999999998888764 222333311 5
Q ss_pred CHHHHHHHHHHHHhcCC
Q 015765 372 KVAEANELIGLMKKRFP 388 (401)
Q Consensus 372 ~~~~a~~~~~~~~~~~~ 388 (401)
.+.++...+++.....|
T Consensus 76 ~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHHhccCc
Confidence 55666666665554433
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.0015 Score=58.34 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhh----cC-CCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765 147 DALNALLLGCILSKNYEEVKRIFTEFPKV----YG-IEPNS-ETYNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
.+++.|..+|...|++++|+.++++..+- .| -.|+. .+++.|...|...|++++|..++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 44555666666666666666665555321 11 12222 3456666666666666666666665543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0024 Score=57.07 Aligned_cols=86 Identities=7% Similarity=-0.105 Sum_probs=46.5
Q ss_pred CCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHHHHHHHH
Q 015765 88 ANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-----YG--LRQSVDALNALLL 154 (401)
Q Consensus 88 ~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~ 154 (401)
.|++++|+.++++... .+..+....+++.+..+|...|++++|+.++++.++ .| .+....+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 3555666655555441 122222345566666666666666666666665543 22 1112344566666
Q ss_pred HHHhcCCHHHHHHHHHhch
Q 015765 155 GCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~~ 173 (401)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666554
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.11 E-value=0.00065 Score=46.60 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHhcCCChHHHHHHHHHHHhC
Q 015765 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLD-TYKHLIHGFGKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 316 (401)
....+.+.|++++|...|++..+... .+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566777888888888888777632 2456 7777777888888888888888887765
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0032 Score=46.58 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHH
Q 015765 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG---EYETALKVCRASMAKGWVP--HFSTMKSLVTGLASISKVAEANEL 379 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 379 (401)
.+.+-|.+..+.| .++..+...+..++++.+ ++++++.++++..+.. .| +...+..+.-+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444444444433 244555555555555555 3445555555555543 12 234444455555555666666666
Q ss_pred HHHHHhcCCCC
Q 015765 380 IGLMKKRFPKS 390 (401)
Q Consensus 380 ~~~~~~~~~~~ 390 (401)
++.+.+..|.|
T Consensus 94 ~~~lL~ieP~n 104 (152)
T 1pc2_A 94 VRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHCTTC
T ss_pred HHHHHhcCCCC
Confidence 66655555544
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.06 E-value=0.0035 Score=56.02 Aligned_cols=93 Identities=15% Similarity=0.010 Sum_probs=58.6
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhchhh----cC-CCCC-HHh
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKY---GLRQ----SVDALNALLLGCILSKNYEEVKRIFTEFPKV----YG-IEPN-SET 184 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~ 184 (401)
+..+.+.|++++|+.++++.++. -+.+ ...+++.+...|...|++++|+.++++..+- .| ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777776541 1122 2456677777777778888777777766432 11 1233 235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 015765 185 YNKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 185 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777778888888888877777644
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.03 E-value=0.0046 Score=41.85 Aligned_cols=51 Identities=6% Similarity=-0.073 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Q 015765 338 YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPK 389 (401)
Q Consensus 338 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 389 (401)
.++|..++++..+.. +-++.....+...+.+.|++++|+..|+++.+..|+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344555555444443 233444444444444555555555555555444433
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.02 E-value=0.048 Score=38.96 Aligned_cols=139 Identities=10% Similarity=0.058 Sum_probs=72.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHH
Q 015765 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKA 273 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 273 (401)
-.|.+++..+++.+..+.. +..-|+.+|--....-+-+-..++++.+-+. .|.. .+|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHH
Confidence 3466666666666665432 4444555555444444444444444444221 1111 1223322222
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 015765 274 LLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGW 353 (401)
Q Consensus 274 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 353 (401)
-+-.+- .+...+...+......|+-++-.+++.++... .+|++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 222111 13334455556666667777777777665432 356666666777777777777777777777777664
Q ss_pred C
Q 015765 354 V 354 (401)
Q Consensus 354 ~ 354 (401)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.00 E-value=0.0046 Score=42.91 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC------CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765 286 NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG------CEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+..-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556667777777778888877777766431 1234556677777777777777777777777654
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.99 E-value=0.019 Score=56.03 Aligned_cols=27 Identities=4% Similarity=-0.216 Sum_probs=13.4
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015765 252 VNVYNIRIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 252 ~~~~~~ll~~~~~~~~~~~a~~~~~~~ 278 (401)
...|..+...+.+.++++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555555555555555444
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.95 E-value=0.015 Score=50.14 Aligned_cols=169 Identities=11% Similarity=0.008 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHh--CC---CchHHHHHHHHhh-hCCCCCCchhHH
Q 015765 41 KKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQ--AN---HFNAISQLLEELK-TRPDLRQNERFH 114 (401)
Q Consensus 41 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~-~~~~~~~~~~~~ 114 (401)
....+...+...-...++...... .+.+...|...+.+... .+ +..+|+.+|++.. ..|+... .+
T Consensus 166 i~~~I~~aL~~~l~~~e~~r~~~~------~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~---A~ 236 (372)
T 3ly7_A 166 LLESLSKALNQPWPQRMQETLQKI------LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY---AR 236 (372)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHH------SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH---HH
T ss_pred HHHHHHHHhCchhhHHHHHHHhcc------CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH---HH
Confidence 344455555544433333333322 12245566666655433 33 3577999999988 4444433 44
Q ss_pred HHHHHHHH----hcC-C---hHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhH
Q 015765 115 VHSIVLYG----QAN-M---IDHAMQTFEEMDK-YGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETY 185 (401)
Q Consensus 115 ~~li~~~~----~~~-~---~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 185 (401)
..+..+|. ..+ . .......+..... ...+.+..+|..+...+...|++++|...+++.... .|+...|
T Consensus 237 A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~ 313 (372)
T 3ly7_A 237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNY 313 (372)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHH
T ss_pred HHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHH
Confidence 43333331 111 1 1111122222111 112667888888877777789999999999999876 4788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH
Q 015765 186 NKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLL 223 (401)
Q Consensus 186 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 223 (401)
..+...+.-.|++++|.+.|++.... .|...+|...
T Consensus 314 ~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 314 VLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 88888899999999999999998775 5666665543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0042 Score=55.53 Aligned_cols=93 Identities=2% Similarity=-0.105 Sum_probs=63.7
Q ss_pred HHHHHhCCCchHHHHHHHHhhh------CCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-----CC--CCCCHHH
Q 015765 82 VSKLSQANHFNAISQLLEELKT------RPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-----YG--LRQSVDA 148 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~ 148 (401)
+..+.+.|++++|++++++... .+..+....+++.+...|...|++++|+.++++.++ .| .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4556677888888888877762 122233356677778888888888888888877654 23 1122455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765 149 LNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888888888888888777643
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.87 E-value=0.019 Score=56.12 Aligned_cols=128 Identities=10% Similarity=0.090 Sum_probs=81.6
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHH
Q 015765 191 SFCESGDSSSVYS-ILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSE 269 (401)
Q Consensus 191 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 269 (401)
.....+++++|.+ ++.. ++ +......++..+.+.|.++.|.++.+.- ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345677777766 4421 11 1222366667777888888877665311 11133456779999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765 270 EAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASM 349 (401)
Q Consensus 270 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (401)
.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 999986543 3678999999999999999999999998753 3344444444555555555544444
Q ss_pred HC
Q 015765 350 AK 351 (401)
Q Consensus 350 ~~ 351 (401)
..
T Consensus 735 ~~ 736 (814)
T 3mkq_A 735 TT 736 (814)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.85 E-value=0.034 Score=47.91 Aligned_cols=72 Identities=8% Similarity=-0.046 Sum_probs=38.7
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 015765 215 PNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTY 290 (401)
Q Consensus 215 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 290 (401)
.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 344455555444444566666666666665553 44444555555555566666666666655554 3344443
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.60 E-value=0.11 Score=37.14 Aligned_cols=149 Identities=11% Similarity=0.085 Sum_probs=92.9
Q ss_pred HHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH
Q 015765 113 FHVHSIVL--YGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK 190 (401)
Q Consensus 113 ~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 190 (401)
+...|+.+ ..-.|..++..++..+.... .+..-+|.+|.-....-+-+-..++++.+-+-+ |..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Dis------- 72 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DLD------- 72 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CGG-------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----CcH-------
Confidence 33444443 34567778888888777663 356667777766666677777777777664432 221
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHH
Q 015765 191 SFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEE 270 (401)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 270 (401)
..|++......+-.+ ..+...+...++.+...|+.++..+++..+... .+|+....-.+..+|.+.|+..+
T Consensus 73 ---~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 73 ---KCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp ---GCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred ---hhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhh
Confidence 234455544444432 124455566667777777777777777775442 35566667777777777777777
Q ss_pred HHHHHHHHHHCCCC
Q 015765 271 AKALLDGMLSRGIK 284 (401)
Q Consensus 271 a~~~~~~~~~~~~~ 284 (401)
+.+++.+.-+.|++
T Consensus 144 a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 144 ATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhH
Confidence 77777777777754
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.50 E-value=0.051 Score=36.58 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
.++|..++++.++.. +.+......+...+.+.|++++|+..|+++.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355555555554443 33444444444555555555555555555543
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.11 Score=39.37 Aligned_cols=130 Identities=9% Similarity=0.005 Sum_probs=92.8
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChH
Q 015765 225 AGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLE 304 (401)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 304 (401)
......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+ +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456789999999987765 3678899999999999999999999987653 344555566678888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
+..++-+.....| -++.....+.-.|+++++.+++.+ .|--|.. +......|-.+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA------~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLA------YAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence 8777766666554 356666677788999999999854 3322211 111223577788888887763
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.22 Score=37.75 Aligned_cols=100 Identities=7% Similarity=0.035 Sum_probs=57.5
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 271 (401)
..+.|+++.|.++.+++ .+...|..+.......|+++-|++.|....+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666666554 2456666666666666676666666665433 44455555556666665
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 015765 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFAS 312 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 312 (401)
.++-+.....|- ++.....+...|+++++.++|.+
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555444431 33334444556666666666643
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.32 E-value=0.037 Score=38.17 Aligned_cols=67 Identities=6% Similarity=-0.124 Sum_probs=41.8
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-----CCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRP-----DLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
+...+..+...+.+.|+++.|...|+...... .......++..+..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455566677777777777777777665211 11233556666667777777777777777776655
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.29 E-value=0.066 Score=39.55 Aligned_cols=82 Identities=7% Similarity=-0.027 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhchhhcCCCC--CHHhHHHHHHHHHhcCChhHH
Q 015765 127 IDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK---NYEEVKRIFTEFPKVYGIEP--NSETYNKVIKSFCESGDSSSV 201 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 201 (401)
...+.+-|.+..+.| .++..+...+..++++.+ ++++++.++++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 445566666666655 467777777777888777 5668888888877652 24 244555666677888888888
Q ss_pred HHHHHHHHhC
Q 015765 202 YSILAEMRRK 211 (401)
Q Consensus 202 ~~~~~~~~~~ 211 (401)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888764
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.18 E-value=0.03 Score=39.78 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCCHHHHHH
Q 015765 303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET---ALKVCRASMAKGWV-PHFSTMKSLVTGLASISKVAEANE 378 (401)
Q Consensus 303 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 378 (401)
...+.+-|......| .++..+-..+..++.+..+... ++.+++.....+-+ -.......|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444433 2555555566666666665444 66666666654311 133444555666677777777777
Q ss_pred HHHHHHhcCCCCc
Q 015765 379 LIGLMKKRFPKSG 391 (401)
Q Consensus 379 ~~~~~~~~~~~~~ 391 (401)
+++.+++..|.|.
T Consensus 96 ~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 96 YVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 7777777666554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.48 Score=39.20 Aligned_cols=130 Identities=10% Similarity=0.081 Sum_probs=80.1
Q ss_pred hcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHH-HHHhc--CC------hhHHHHHHHHHHhCCCCCC---HHhHHHHHH
Q 015765 158 LSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIK-SFCES--GD------SSSVYSILAEMRRKSIRPN---ATDFGLLLA 225 (401)
Q Consensus 158 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~------~~~a~~~~~~~~~~~~~~~---~~~~~~ll~ 225 (401)
+.++..+..+.+.+..+. .+....|..++. .+... |+ ...|...+++..+. .|+ ...|..+..
T Consensus 133 ~~~~~~~~~~~l~~~~~~---dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~ 207 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRV---DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTK 207 (301)
T ss_dssp TSSCHHHHHHHHTTCCGG---GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCcc---ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHH
Confidence 344555555555555321 233345554443 33332 33 34566666666654 444 456777777
Q ss_pred HHHc-----cCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC--cCHHHHHH
Q 015765 226 GFYK-----EHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL-KRSEEAKALLDGMLSRGIK--PNLDTYKH 292 (401)
Q Consensus 226 ~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--p~~~~~~~ 292 (401)
.|.+ -|+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++....... |+....+.
T Consensus 208 lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 208 FYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 7777 388888888888888865333467777777777774 8888888888888887655 55444443
No 231
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.51 Score=42.26 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=97.4
Q ss_pred CCchHHHHHHHHhh----hCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH----hc
Q 015765 89 NHFNAISQLLEELK----TRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDK-YGLRQSVDALNALLLGCI----LS 159 (401)
Q Consensus 89 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~ 159 (401)
|+++.|++.+-.+. ...+..........++..|...|+++...+.+.-+.+ +|.. ......+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 77888888775554 2445555577788888888888998888777766544 3322 222233333222 12
Q ss_pred C--CHHHHHHHHHhchhhc--CCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC---HHhHHHHHHHH
Q 015765 160 K--NYEEVKRIFTEFPKVY--GIEPN---SETYNKVIKSFCESGDSSSVYSILAEMRRK--SIRPN---ATDFGLLLAGF 227 (401)
Q Consensus 160 ~--~~~~a~~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~ 227 (401)
. +.+.-..+.+...... .+-.. ......|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 2222233333332110 01111 112244566666777777777777776432 21111 12444555666
Q ss_pred HccCChHHHHHHHHHHHH----cCCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015765 228 YKEHKYEDVGKVLQMMEK----CGIASG--VNVYNIRIQSLCKLKRSEEAKALLDGML 279 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 279 (401)
...+++..|..++.++.. ...+|+ ...+...+..+...+++.+|.+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666666666666665532 111111 1234445555555666666666555554
No 232
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.94 E-value=0.05 Score=36.43 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Q 015765 339 ETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRF 387 (401)
Q Consensus 339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 387 (401)
-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++.++.+.
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3444444444444455555555555555555555555555555555443
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.79 E-value=0.68 Score=38.34 Aligned_cols=95 Identities=7% Similarity=0.054 Sum_probs=73.4
Q ss_pred HHHHHHHHHhchhhcCCCCC---HHhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHcc-CC
Q 015765 162 YEEVKRIFTEFPKVYGIEPN---SETYNKVIKSFCES-----GDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKE-HK 232 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~ 232 (401)
...|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++.+..+..-+..++......++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 46777777777654 666 45789999999984 99999999999998864322477888888888885 99
Q ss_pred hHHHHHHHHHHHHcCCC--CCchhHHHHH
Q 015765 233 YEDVGKVLQMMEKCGIA--SGVNVYNIRI 259 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~--~~~~~~~~ll 259 (401)
.+++.+.+++....... |+....+.+-
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 99999999999997655 6555444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.49 E-value=0.24 Score=36.27 Aligned_cols=63 Identities=13% Similarity=0.266 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 015765 301 GNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVT 365 (401)
Q Consensus 301 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 365 (401)
+++++|.++|+.+++.+-+- ...|......-.+.|+.+.|.+++.+.+..+..| ...+...+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 67777777777776542222 5566666666677778888888887777766443 334443333
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.35 E-value=0.25 Score=36.13 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765 266 KRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF 331 (401)
Q Consensus 266 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 331 (401)
+++++|.++|+.+....-+. ...|....+.-.+.|+..+|.+++...+..+.+|. ..+...+.-
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHh
Confidence 67777777777776543222 55666666666677888888888888777664443 344444443
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.09 E-value=2.8 Score=41.05 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=9.7
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 015765 226 GFYKEHKYEDVGKVLQMMEK 245 (401)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~ 245 (401)
+|+..|+.....+++..+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34445555444445555443
No 237
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.03 E-value=0.13 Score=36.48 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCcccchh
Q 015765 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSGDMWNA 396 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 396 (401)
+..+-++.+...++.|++.+..+-+++|.+.+|+..|.++|+-++.+..+....|..
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y 127 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPY 127 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHH
Confidence 344444444444555555555555555555555555555555555553333333433
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.52 Score=44.95 Aligned_cols=128 Identities=15% Similarity=0.095 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhC------CCCCCH-----
Q 015765 256 NIRIQSLCKLKR-SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG-NLEGAKKLFASMTNG------GCEPDS----- 322 (401)
Q Consensus 256 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~------~~~~~~----- 322 (401)
..++..+...++ ++.|..+|+++......-+......++..+...+ +--+|.+++.+..+. ...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 334444444555 4667778877776632212222223333333332 222344554444321 111111
Q ss_pred ------hhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765 323 ------YCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 323 ------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
.....-...|...|+++.|.++-++....- +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222455677899999999998888763 5567889999999999999999998888763
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.80 E-value=0.69 Score=33.50 Aligned_cols=72 Identities=8% Similarity=0.067 Sum_probs=40.1
Q ss_pred CCCHhhHHHHHHHHHccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCC
Q 015765 319 EPDSYCFFMFTYFLCQGGE---YETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKS 390 (401)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 390 (401)
.|+..+-.....++.+..+ ..+++.+++.....+..-.......|.-++.+.|++++|.++.+.+++..|.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3555555555555555543 33556666665554322233444455566666666666666666666666555
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.57 E-value=0.32 Score=34.76 Aligned_cols=73 Identities=8% Similarity=0.068 Sum_probs=42.4
Q ss_pred CCCHhhHHHHHHHHHccCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCCc
Q 015765 319 EPDSYCFFMFTYFLCQGGEY---ETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKKRFPKSG 391 (401)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 391 (401)
.|+..+-.....++.+..+. .+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.+.+..|.|.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 45555555555555555433 35666666666554212344555566666677777777777777776666553
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.52 E-value=0.77 Score=40.28 Aligned_cols=131 Identities=15% Similarity=0.057 Sum_probs=73.6
Q ss_pred CCccHhHHHHHHHHHH---hCCCchHHHHHHHHhhh--CCCCCCchhHHHHHHHHHHhcCChH-HHHHHHHHHhhCCCCC
Q 015765 71 SPLDRMAFSIAVSKLS---QANHFNAISQLLEELKT--RPDLRQNERFHVHSIVLYGQANMID-HAMQTFEEMDKYGLRQ 144 (401)
Q Consensus 71 ~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~ 144 (401)
...|...|..++.... ..|+.+.|.+.+++... .+...++.. ...+- ....-+++..
T Consensus 108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~------ 170 (388)
T 2ff4_A 108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDK------ 170 (388)
T ss_dssp GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHH------
T ss_pred ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHH------
Confidence 3446666666655433 45788888888887762 222222110 01111 1111222221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHh
Q 015765 145 SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRR-----KSIRPNATD 219 (401)
Q Consensus 145 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 219 (401)
..+...++..+...|+.+++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+
T Consensus 171 -~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 171 -VLAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 1233445666667777777777777766543 55666777777777777777777777776543 367776665
Q ss_pred HH
Q 015765 220 FG 221 (401)
Q Consensus 220 ~~ 221 (401)
-.
T Consensus 248 ~~ 249 (388)
T 2ff4_A 248 RA 249 (388)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.33 E-value=4.3 Score=39.77 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=73.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHhHHHH--HHHHHccCChHHHHHHHHHHHHcCCCCCchhH--HHHHHHHHhcCC
Q 015765 192 FCESGDSSSVYSILAEMRRKSIRPNATDFGLL--LAGFYKEHKYEDVGKVLQMMEKCGIASGVNVY--NIRIQSLCKLKR 267 (401)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~ 267 (401)
++-.|+-+....++..+.+.. +......+ .-++...|+.+.+..+++.+.... .|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334555555566665555431 22222222 233345667777776666665531 2221111 123345556677
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHH
Q 015765 268 SEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY-ETALKVCR 346 (401)
Q Consensus 268 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~ 346 (401)
.....+++..+.... ..++...-.+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++...+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 666666777766542 1122222233333444566666666665555443 33333333333333333332 56666666
Q ss_pred HHHH
Q 015765 347 ASMA 350 (401)
Q Consensus 347 ~~~~ 350 (401)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6653
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.27 E-value=0.32 Score=34.55 Aligned_cols=85 Identities=5% Similarity=-0.040 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhchhhcCCCC--CHHhHHHHHHHHHhcCCh
Q 015765 124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEE---VKRIFTEFPKVYGIEP--NSETYNKVIKSFCESGDS 198 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 198 (401)
......+.+-|......| .++..+-..+..+++++++... ++.+++.+.+.. .| .....-.+.-++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence 344555566666555555 3677777777777777776555 777777776531 13 223444566677788888
Q ss_pred hHHHHHHHHHHhC
Q 015765 199 SSVYSILAEMRRK 211 (401)
Q Consensus 199 ~~a~~~~~~~~~~ 211 (401)
+.|.+.++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.56 E-value=4.8 Score=37.63 Aligned_cols=324 Identities=9% Similarity=0.019 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHH
Q 015765 38 IKEKKRATIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHS 117 (401)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 117 (401)
....+..+...+.. ++...+..+...+...| ..| -..|..+...+ ......++..+++. .++.|.....-...
T Consensus 6 ~~~~~~~a~~a~~~-~~~~~~~~l~~~l~~~p-L~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~---~~~~p~~~~Lr~~~ 78 (618)
T 1qsa_A 6 QRSRYAQIKQAWDN-RQMDVVEQMMPGLKDYP-LYP-YLEYRQITDDL-MNQPAVTVTNFVRA---NPTLPPARTLQSRF 78 (618)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHSGGGTTST-THH-HHHHHHHHHTG-GGCCHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHhhcCCC-cHH-HHHHHHHHhCc-ccCCHHHHHHHHHH---CCCChhHHHHHHHH
Confidence 34456666666654 66777777766653332 221 22444443322 22245555555554 66666656666777
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCC
Q 015765 118 IVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGD 197 (401)
Q Consensus 118 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (401)
+..+.+.+++...+..+.. . +.+...-.....+....|+..+|......+-... ......+..++..+.+.|.
T Consensus 79 l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 79 VNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCCC
Confidence 8888888888887775553 1 5566666677888888899877777666654332 3334567788888887775
Q ss_pred hhH--HHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHc---------CCCCCch---hHHHHHHHHH
Q 015765 198 SSS--VYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKC---------GIASGVN---VYNIRIQSLC 263 (401)
Q Consensus 198 ~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~---~~~~ll~~~~ 263 (401)
+.. ...-++.+...| +...-..++... . .+.....+.+..+.+. ...++.. .+...+.-+.
T Consensus 152 lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVA 226 (618)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHH
Confidence 543 223333333332 111111111111 0 0010000111111110 0122222 1222233333
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHH----HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 015765 264 KLKRSEEAKALLDGMLSRGIKPNLDT----YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYE 339 (401)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (401)
+ .+.+.|...+....+.+ ..+... +..+.......+...++...+...... ..+.....-.+....+.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHH
Confidence 3 47899999998886543 223322 233333444455355666666665543 244444444555556789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765 340 TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
.|...|+.|.... .......--+.+++...|+.++|..+|..+.+
T Consensus 303 ~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999998876542 22455566677888889999999999998875
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.52 E-value=2.1 Score=43.58 Aligned_cols=146 Identities=14% Similarity=0.080 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-----------------
Q 015765 80 IAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGL----------------- 142 (401)
Q Consensus 80 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----------------- 142 (401)
.++..+.+.+.++.+.++....... ....-.+..+|...|++++|.+.|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~------~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSD------PIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCC------cHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 4566677777777777665553311 11223345567777888888887766421 11
Q ss_pred ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC-H--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 015765 143 ------RQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-S--ETYNKVIKSFCESGDSSSVYSILAEMRRKSI 213 (401)
Q Consensus 143 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 213 (401)
..-..-|..++..+-+.+.++.+.++-....+..+..++ . ..|..+.+.+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 112244777888888888888888777665544221211 1 2578888999999999999999988876543
Q ss_pred CCCHHhHHHHHHHHHccCChH
Q 015765 214 RPNATDFGLLLAGFYKEHKYE 234 (401)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~ 234 (401)
+ ......++...|..|+.+
T Consensus 970 r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHH
T ss_pred H--HHHHHHHHHHHHhCCChh
Confidence 3 445556666666555543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.37 E-value=4.2 Score=36.35 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=151.1
Q ss_pred CChhHHHHHhhhcc----CCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHH----hc
Q 015765 53 SNPFRILDICCGAS----LAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYG----QA 124 (401)
Q Consensus 53 ~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 124 (401)
++++.|++.+.... ...+..-+......++..|...|+++...+.+..+....+.. ......++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 67889988775543 233344567788899999999999999988887776443322 233445554332 23
Q ss_pred CChHH--HHHHHHHHhh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC----HHhHHHHHHHH
Q 015765 125 NMIDH--AMQTFEEMDK--YG-LRQ---SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN----SETYNKVIKSF 192 (401)
Q Consensus 125 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 192 (401)
...+. -..+.+.... .| +-. .......|...+...|++.+|.+++..+..+..-..+ ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332 2222222211 11 111 2234466788899999999999999999655332223 24567788889
Q ss_pred HhcCChhHHHHHHHHHHh----CCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCchhHHH----HHHH
Q 015765 193 CESGDSSSVYSILAEMRR----KSIRPN--ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC-GIASGVNVYNI----RIQS 261 (401)
Q Consensus 193 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~----ll~~ 261 (401)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+. ....+...+.. ++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999998742 222222 234667777888899999999888777442 11112222221 1111
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcC--CChHHHHHHHHH
Q 015765 262 LCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKE--GNLEGAKKLFAS 312 (401)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~ 312 (401)
..-.+....-.+++........-++...|..++.+|... .+++.+.+.|..
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 122222222233333333322234667777788877643 345555555543
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.02 E-value=0.84 Score=43.56 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCC-HHHHHHHHHhchhhc-----CCCC-C
Q 015765 112 RFHVHSIVLYGQANM-IDHAMQTFEEMDKYGLRQSVDAL--NALLLGCILSKN-YEEVKRIFTEFPKVY-----GIEP-N 181 (401)
Q Consensus 112 ~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-~~~a~~~~~~~~~~~-----~~~~-~ 181 (401)
.....++..+...++ .+.|..+|+++.+.. |...++ ..++..+...++ --+|.+++.+..+.. ..++ +
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 344556666666666 577888888887763 332222 233333333322 223444443332210 1111 1
Q ss_pred H----------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 015765 182 S----------ETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHKYEDVGKVLQMM 243 (401)
Q Consensus 182 ~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 243 (401)
. ...+.-...+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11222234456688888899888888765 3445778899999999999999988887766
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.82 E-value=1 Score=40.28 Aligned_cols=122 Identities=7% Similarity=0.049 Sum_probs=85.3
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+..+|..+-.+|...+.+..|.-.--.+...++..+ .++..|-+.|.+++-+.+++.-.... ......|+-|.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~------elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE------ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCS------GGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHH------HHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 566899999999999999888877666664443333 46777888899999999998877433 46777888888
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCC------HHhHHHHHHHHHhcCChhHHHH
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEPN------SETYNKVIKSFCESGDSSSVYS 203 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 203 (401)
-.|++- .+++..+.++....+.+++.- ...|.-++-.|++-.++|.|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 777766 566666666666544444332 2346667777777777776544
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.77 E-value=3.9 Score=34.36 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=10.4
Q ss_pred HhcCCChHHHHHHHHHHH
Q 015765 297 FGKEGNLEGAKKLFASMT 314 (401)
Q Consensus 297 ~~~~~~~~~a~~~~~~m~ 314 (401)
|...|+...|..+++...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 334566666666666543
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.69 E-value=1.9 Score=37.73 Aligned_cols=66 Identities=11% Similarity=-0.051 Sum_probs=30.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----CCCCCHHHH
Q 015765 294 IHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK-----GWVPHFSTM 360 (401)
Q Consensus 294 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~ 360 (401)
+..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|++..+. |+.|...+-
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444455555554444444321 224444555555555555555555554443321 555554443
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.68 E-value=3.7 Score=41.81 Aligned_cols=142 Identities=12% Similarity=-0.012 Sum_probs=68.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC--------------
Q 015765 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN-------------- 181 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 181 (401)
.++..+...+.++.+.++.... +.+...-..+..+|...|++++|.+.|.+... |+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhccccccc
Confidence 3444455556665555544332 22333334455667777777777777766522 11111
Q ss_pred ---------HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 015765 182 ---------SETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA----TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGI 248 (401)
Q Consensus 182 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 248 (401)
..-|..++..+-+.+.++.+.++-....+.....+. ..|..+.+.+...|++++|...+-.+.+...
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 012344555555555555555555444332111111 1355555666666666666655555544322
Q ss_pred CCCchhHHHHHHHHHhcC
Q 015765 249 ASGVNVYNIRIQSLCKLK 266 (401)
Q Consensus 249 ~~~~~~~~~ll~~~~~~~ 266 (401)
-......++..+|..|
T Consensus 970 --r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp --CHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHHhCC
Confidence 2234444444444443
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.58 E-value=2.3 Score=31.75 Aligned_cols=62 Identities=15% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhh----CCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKT----RPDLRQN---ERFHVHSIVLYGQANMIDHAMQTFEEMD 138 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~ 138 (401)
.+-.-+..+...|.++.|+-+.+.+.. .++..+. ..++..+..++...|+|..|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444456677777777777777766552 2222111 1234455566777888888888887754
No 253
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.33 E-value=6.9 Score=34.15 Aligned_cols=16 Identities=6% Similarity=-0.101 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHCC
Q 015765 337 EYETALKVCRASMAKG 352 (401)
Q Consensus 337 ~~~~a~~~~~~~~~~~ 352 (401)
..++++..+.+|+..|
T Consensus 329 s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 PMPQVEKKLSQMILDK 344 (394)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4566666666666654
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.27 E-value=7 Score=34.11 Aligned_cols=166 Identities=8% Similarity=-0.010 Sum_probs=85.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHhchhhcCCCCCHHhH
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYG-LRQ---SVDALNALLLGCILS-KNYEEVKRIFTEFPKVYGIEPNSETY 185 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~ 185 (401)
+.....+...|.+.|+.++..+++......= .-+ .......+++.+... +..+.-.++..+..+.. .-+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA--KQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH--HHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4556667777888888888888877764311 111 223345566666553 33333344443333211 1111222
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCc
Q 015765 186 ------NKVIKSFCESGDSSSVYSILAEMRRKSIRPN-----ATDFGLLLAGFYKEHKYEDVGKVLQMMEKC--GIASGV 252 (401)
Q Consensus 186 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 252 (401)
.-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.++.
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 1456677777777777777777655311112 123444556666777777777777665432 121222
Q ss_pred hhHHH----HHHHHH-hcCCHHHHHHHHHHH
Q 015765 253 NVYNI----RIQSLC-KLKRSEEAKALLDGM 278 (401)
Q Consensus 253 ~~~~~----ll~~~~-~~~~~~~a~~~~~~~ 278 (401)
..... -...+. ..+++..|...|-+.
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 21111 112233 566777776666554
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.89 E-value=2.6 Score=28.38 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015765 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 175 (401)
+.=++.+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-+...
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666666666666777777777777777777777777777766443
No 256
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.51 E-value=0.0079 Score=53.29 Aligned_cols=246 Identities=8% Similarity=0.045 Sum_probs=158.0
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
.+..|..+..+..+.+++.+|++-|=+. .+ ...|..+|....+.|.+++-.+.+....+.. .++.+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA---~D----ps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC---SC----CCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC---CC----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 4557888999999999888888766332 11 2357788888889999999988887776553 3444556788
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------C
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS--------------------I 213 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~ 213 (401)
-+|++.++..+.++++ . .||..-...+..-|...|.++.|.-+|..+..-. -
T Consensus 124 ~ayAk~~rL~elEefl----~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHTSCSSSTTTSTT----S----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHhhCcHHHHHHHH----c----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999988865433222 1 4666666777888888888887777766542211 1
Q ss_pred CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 015765 214 RPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHL 293 (401)
Q Consensus 214 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 293 (401)
.-+..||..+-.+|...+++.-|...--.+.-. ++ -...++..|-..|.+++.+.+++.-... -......|+-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 235678888888888888877665443333221 11 1233567777888888888888876643 23467788888
Q ss_pred HHHHhcCCChHHHHHHHHHHHhC-CCC------CCHhhHHHHHHHHHccCCHHHHHH
Q 015765 294 IHGFGKEGNLEGAKKLFASMTNG-GCE------PDSYCFFMFTYFLCQGGEYETALK 343 (401)
Q Consensus 294 i~~~~~~~~~~~a~~~~~~m~~~-~~~------~~~~~~~~li~~~~~~g~~~~a~~ 343 (401)
.-.|++- ++++..+-++..-.. +++ -....|.-++-.|.+-.+++.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777765 555555554433221 111 123456666666666666665543
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.57 E-value=5.2 Score=28.58 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765 129 HAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
+..+-++.+...++.|++.+..+.+.+|-+.+|+..|..+|+-+..
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555555666665566666666666666666555543
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.44 E-value=2.2 Score=31.80 Aligned_cols=124 Identities=7% Similarity=0.010 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHhhhcc----CCCCC-Ccc--HhHHHHHHHHHHhCCCchHHHHHHHHhhhCC-CCCCc
Q 015765 39 KEKKRATIARLKSESNPFRILDICCGAS----LAPES-PLD--RMAFSIAVSKLSQANHFNAISQLLEELKTRP-DLRQN 110 (401)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 110 (401)
...+..-++.+-..+.++.|.-+.+-+. .+++. +|. ..++..+.+++-..|++.+|...|++..... ..+..
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455666777778888888876655432 12211 121 1256677889999999999999999965211 11110
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhh
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKV 175 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 175 (401)
......+. ....... ......+...-.-+..+|.+.+++++|+.+++.++..
T Consensus 100 ~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 100 SKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11111110 0000000 0111334555555777888888888888888888644
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.25 E-value=7.2 Score=31.78 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=31.2
Q ss_pred HHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 015765 84 KLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKY 140 (401)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 140 (401)
...+.|++++|++....-++. .|.|...-..++..+|-.|+++.|.+=++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344566666666655544422 2444555566666666666666666666555544
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.61 E-value=7.3 Score=27.80 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=11.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHh
Q 015765 292 HLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 292 ~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
-|.-++.+.|++++|.++.+.+.+
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 333444444455555544444444
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.30 E-value=16 Score=32.29 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=55.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCchhHHHH--
Q 015765 184 TYNKVIKSFCESGDSSSVYSILAEMRRKS--IRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCG-IASGVNVYNIR-- 258 (401)
Q Consensus 184 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l-- 258 (401)
+...+...|.+.|+++.|.+.|.++...- ..--...+-.+++.+...+++..+...+.++...- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45667777777777777777777776532 22224456667777777777777777776664321 01122111111
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHH
Q 015765 259 --IQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 259 --l~~~~~~~~~~~a~~~~~~~~~ 280 (401)
...+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122345777777777766544
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.99 E-value=7.1 Score=26.17 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=23.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCC
Q 015765 261 SLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGG 317 (401)
Q Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 317 (401)
.+...|++++|..+.+.+ +.||...|-+|... +.|..+++..-+.++..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 344455555555544322 24555555444432 3444444444444444433
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.63 E-value=19 Score=30.46 Aligned_cols=136 Identities=11% Similarity=0.065 Sum_probs=64.2
Q ss_pred CCchHHHHHHHHhhhCCCC---CCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015765 89 NHFNAISQLLEELKTRPDL---RQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEV 165 (401)
Q Consensus 89 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 165 (401)
+++++.++-++.-...++. ..-.+.|.++..-|.+.+++++|++++..-. ..+.+.|+...+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg 74 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSG 74 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchH
Confidence 3444444444444444544 3334556666666666666666666544322 123344555444
Q ss_pred HHHH----HhchhhcCCCCCHHhHHHHHHHHHhcCChh-HHHHHHHHH----HhCC--CCCCHHhHHHHHHHHHccCChH
Q 015765 166 KRIF----TEFPKVYGIEPNSETYNKVIKSFCESGDSS-SVYSILAEM----RRKS--IRPNATDFGLLLAGFYKEHKYE 234 (401)
Q Consensus 166 ~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~ll~~~~~~~~~~ 234 (401)
-++- +-+ ++.++++|.....-++..+.....-+ .=..+++++ .+.| ..-|......+...|.+.+++.
T Consensus 75 ~DL~~llvevy-~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 75 GDLAVLLVDTF-RQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 3333 333 33366666666666666555444211 111122222 1112 1224444455555566666655
Q ss_pred HHHHHH
Q 015765 235 DVGKVL 240 (401)
Q Consensus 235 ~a~~~~ 240 (401)
+|+..|
T Consensus 154 ~Ae~H~ 159 (336)
T 3lpz_A 154 AAEKHL 159 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.49 E-value=11 Score=27.62 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC
Q 015765 128 DHAMQTFEEMDKYGLRQS-VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN 181 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 181 (401)
+++.++|..|...|+-.. ...|......+-..|++.+|.++|+.-.+. +..|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 347788888887776544 445666677777888888888888877654 44443
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.51 E-value=6.9 Score=26.19 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHH
Q 015765 232 KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFA 311 (401)
Q Consensus 232 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 311 (401)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ +.||...|-+|.. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555544432 1111222223344555555555543322 3455555554443 24455555555554
Q ss_pred HHHhCC
Q 015765 312 SMTNGG 317 (401)
Q Consensus 312 ~m~~~~ 317 (401)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 554443
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.36 E-value=14 Score=28.65 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCC
Q 015765 268 SEEAKALLDGMLSRGIKPN-LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEP 320 (401)
Q Consensus 268 ~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 320 (401)
..++..+|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444455555544433221 2334444444444455555555555444444333
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.22 E-value=14 Score=28.61 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=35.0
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCC
Q 015765 124 ANMIDHAMQTFEEMDKYGLRQS-VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEP 180 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 180 (401)
.+...++.++|..|...|+... ...|......+-..|++.+|.++|+.-.+. +..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcc
Confidence 4446677777777776665433 444555666666777777777777766543 3344
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.99 E-value=21 Score=29.08 Aligned_cols=52 Identities=17% Similarity=0.123 Sum_probs=22.9
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765 228 YKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
.+.|++++++.....-++.. +.|...-..+++.+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444444444443332 33344444444444444444444444444443
No 269
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.18 E-value=10 Score=34.36 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHhhhCCCC-CCch---hHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 015765 76 MAFSIAVSKLSQANHFNAISQLLEELKTRPDL-RQNE---RFHVHSIVLYGQANMIDHAMQTFEEMDK 139 (401)
Q Consensus 76 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 139 (401)
..++.++..|...+.++.|..+..+.. .|.. .++. ..+-.+...+.-.+++.+|.+.+....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666666666666666666554 2211 1111 1122233445555666666666655544
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.59 E-value=12 Score=25.00 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 015765 125 NMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSI 204 (401)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 204 (401)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|-.+.. .+.|..+++...
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHH
Confidence 456777777777766542 22222222445677888888887776664 678777766544 466777777777
Q ss_pred HHHHHhCCCCCCHHhHH
Q 015765 205 LAEMRRKSIRPNATDFG 221 (401)
Q Consensus 205 ~~~~~~~~~~~~~~~~~ 221 (401)
+.++..+| .|....|.
T Consensus 91 L~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 91 LAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTCS-SHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 77777665 34444443
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.90 E-value=13 Score=24.92 Aligned_cols=88 Identities=16% Similarity=0.119 Sum_probs=53.7
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 015765 124 ANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYS 203 (401)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 203 (401)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+... .||...|..+.. .+.|..+++..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHH
Confidence 3456777777777666542 22222222345667888888888777764 677777766654 45677777777
Q ss_pred HHHHHHhCCCCCCHHhHH
Q 015765 204 ILAEMRRKSIRPNATDFG 221 (401)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~ 221 (401)
.+.++...| .|....|.
T Consensus 91 rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 91 RLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 777776665 33444443
No 272
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.89 E-value=17 Score=26.27 Aligned_cols=66 Identities=14% Similarity=0.056 Sum_probs=29.7
Q ss_pred CCchhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 015765 250 SGVNVYNIRIQSLCKLKRS---EEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTN 315 (401)
Q Consensus 250 ~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 315 (401)
++..+--.+..++.+..+. .+++.+++.+.+.+..-......-|.-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444432 23455555554432211223333344445555555555555555554
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.62 E-value=17 Score=27.02 Aligned_cols=51 Identities=12% Similarity=-0.021 Sum_probs=24.2
Q ss_pred HHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 015765 94 ISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQ 144 (401)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 144 (401)
+.++|..|...+.-..-..+|......+-..|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 444444444333222224455555555555555555555555555544444
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.11 E-value=44 Score=29.53 Aligned_cols=101 Identities=11% Similarity=0.005 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHH
Q 015765 111 ERFHVHSIVLYGQANMIDHAMQTFEEMDKY--GLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKV 188 (401)
Q Consensus 111 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 188 (401)
......+...|.+.|+++.|.+.|.++... +...-...+-.+++.+...+++..+...+.+......-.++....+.+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 446778889999999999999999998763 223446677788899999999999999988875433223333222211
Q ss_pred ----HHHHHhcCChhHHHHHHHHHHhC
Q 015765 189 ----IKSFCESGDSSSVYSILAEMRRK 211 (401)
Q Consensus 189 ----~~~~~~~~~~~~a~~~~~~~~~~ 211 (401)
...+...+++..|.+.|-+....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11233567888888888776543
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.98 E-value=16 Score=29.61 Aligned_cols=48 Identities=2% Similarity=-0.074 Sum_probs=23.6
Q ss_pred cCCChHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHccCCHHHHHHHHH
Q 015765 299 KEGNLEGAKKLFASMTNGGCEPDSYC--FFMFTYFLCQGGEYETALKVCR 346 (401)
Q Consensus 299 ~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 346 (401)
..++.....++++.+.+.|..++... -...+...+..|+.+-+..+++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34554455566666666665554321 1122333445666654444443
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.74 E-value=41 Score=28.17 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHH
Q 015765 286 NLDTYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 286 ~~~~~~~li~~~~~~~~~~~a~~~~ 310 (401)
+......+...|.+.|++.+|..-|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4445555555555666665555444
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=70.31 E-value=29 Score=25.42 Aligned_cols=53 Identities=19% Similarity=0.215 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 015765 304 EGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPH 356 (401)
Q Consensus 304 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 356 (401)
+.+.++|..|...|+-.. ...|......+...|++++|.++++.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 337778888887766554 45677777777888888888888888777776663
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.31 E-value=23 Score=27.85 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHH
Q 015765 157 ILSKNYEEVKRIFT 170 (401)
Q Consensus 157 ~~~~~~~~a~~~~~ 170 (401)
+..|+.+.+..+++
T Consensus 17 ~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 17 VVQGNLPAVHRLVN 30 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444444
No 279
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.85 E-value=20 Score=28.23 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC
Q 015765 128 DHAMQTFEEMDKYGLRQS-VDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN 181 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 181 (401)
++...+|..|...|+... ...|......+-..|++.+|.++|+.-++. +..|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 466778888888776544 455666677777888888888888887654 44453
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.49 E-value=41 Score=25.00 Aligned_cols=52 Identities=8% Similarity=0.118 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 015765 306 AKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF 357 (401)
Q Consensus 306 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 357 (401)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 5666777776665443 445666666677777777777777777776666643
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.60 E-value=32 Score=24.33 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCC
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM--IDHAMQTFEEMDKYGLR 143 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~ 143 (401)
....++.-|...|+.++|.+.++++. .|...+ .-+...+..+.-+.+. .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f~~-e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC-CCccHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 35567788888888888888888875 332222 2222333333333322 35566777777666643
No 282
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=59.80 E-value=33 Score=22.31 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=29.7
Q ss_pred HhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh
Q 015765 49 LKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK 102 (401)
Q Consensus 49 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (401)
+......++..+.|+.......-..+..-+..++..+...-.-+++.++++.+-
T Consensus 22 ~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D 75 (94)
T 2kz2_A 22 MKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREAD 75 (94)
T ss_dssp HCCCSCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHC
T ss_pred hcCCCHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 444444555666666655444444455556656655544444556666666654
No 283
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.79 E-value=87 Score=26.84 Aligned_cols=76 Identities=9% Similarity=0.039 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCC--hHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGN--LEGAKKLFASMTNGGCEPDSYCFFMFTYF 331 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 331 (401)
.+.++.=|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+...|+-+.......+.+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 466777777888888888888887532221 23444555555555433 34567777777777655554444444433
No 284
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.04 E-value=43 Score=26.68 Aligned_cols=28 Identities=4% Similarity=0.035 Sum_probs=15.7
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765 181 NSETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 181 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
+.......+..+.+.|+.++|.++|-+.
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3444445555566666666666666443
No 285
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.57 E-value=44 Score=26.11 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=12.3
Q ss_pred HHHhcCChHHHHHHHHHHhhCC
Q 015765 120 LYGQANMIDHAMQTFEEMDKYG 141 (401)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~~ 141 (401)
..+..|+.+.+..+++.+.+.|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 3445566666666666554444
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=56.43 E-value=25 Score=25.79 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCC
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM--IDHAMQTFEEMDKYGLR 143 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~ 143 (401)
....++.-|...|+.++|.+.++++. .|.+.+ .-+...+..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~-~p~f~~-e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT-CGGGHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC-CCcchH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45667788888888888888888875 332222 2222333333333222 34566677777666543
No 287
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.03 E-value=71 Score=26.67 Aligned_cols=94 Identities=10% Similarity=0.133 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 015765 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE--YETALKVCRASMAKGWVPHFSTMKSLVTGL 367 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 367 (401)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+.+.|+-+.......+...+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 457788888899999999999988621100 12333444445554433 456778888888777655444433333333
Q ss_pred HccC----CHHHHHHHHHHHH
Q 015765 368 ASIS----KVAEANELIGLMK 384 (401)
Q Consensus 368 ~~~g----~~~~a~~~~~~~~ 384 (401)
.... |+..|..++.++.
T Consensus 248 ~~l~Dl~lDiP~A~~~la~~v 268 (307)
T 2zu6_B 248 NEIPDINLDVPHSYSVLERFV 268 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HhccHhhcccccHHHHHHHHH
Confidence 2222 2334444444443
No 288
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.86 E-value=94 Score=26.32 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHH----HHHHhhCCCCCCHHHHHHH
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQT----FEEMDKYGLRQSVDALNAL 152 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l 152 (401)
.|.++..-|.+.+++++|++++..- ...+.+.|+...+-++ ++.+.+.++++|......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G----------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV----------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4445555555555666555554332 2334566776555544 4666778888998888888
Q ss_pred HHHHHhcCC--HHHHHHHHHhch---hhcC--CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 015765 153 LLGCILSKN--YEEVKRIFTEFP---KVYG--IEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLA 225 (401)
Q Consensus 153 ~~~~~~~~~--~~~a~~~~~~~~---~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 225 (401)
+..+..... .+. .++.+++. ...| ..-|......+...|.+.+++.+|...|- .|..++...|..++-
T Consensus 101 ~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 101 LGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 888776553 111 12222221 1112 23456677788888888888888877763 133333355554444
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 015765 226 GFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLS 280 (401)
Q Consensus 226 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 280 (401)
-+...+... ..+...-..++. |...+++..|..+++...+
T Consensus 176 ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 333332211 122233333333 4556788888887766554
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.44 E-value=32 Score=27.07 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 015765 304 EGAKKLFASMTNGGCEPD-SYCFFMFTYFLCQGGEYETALKVCRASMAKGWVP 355 (401)
Q Consensus 304 ~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 355 (401)
+.+.++|..|...|+-.. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466677887877766544 4556777777777888888888888777776665
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=55.02 E-value=58 Score=24.57 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=8.4
Q ss_pred hcCChhHHHHHHHHHHhCCCC
Q 015765 194 ESGDSSSVYSILAEMRRKSIR 214 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~ 214 (401)
..|+.+.-.++.+.+.+.|..
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCC
T ss_pred HcCCcchHHHHHHHHHHCCCC
Confidence 333333333444444444433
No 291
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.86 E-value=31 Score=27.82 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=24.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHH---HHHHHHHHHhcCCChHHHHHHH
Q 015765 262 LCKLKRSEEAKALLDGMLSRGIKPNLD---TYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~ 310 (401)
.+..++.....++++.+.+.|..++.. ..+.+ ...+..|+.+-+..++
T Consensus 189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL-ILAVEKKHLGLVQRLL 239 (285)
T ss_dssp HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH-HHHHHTTCHHHHHHHH
T ss_pred HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHH
Confidence 344566555566777777777655432 22233 3334556655444333
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.45 E-value=80 Score=25.11 Aligned_cols=91 Identities=18% Similarity=-0.017 Sum_probs=54.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCc----CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 015765 258 RIQSLCKLKRSEEAKALLDGMLSR--GIKP----NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYF 331 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 331 (401)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++.. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 567788889999999999877653 2221 111112223322233333334444444532 4556667777788
Q ss_pred HHccCCHHHHHHHHHHHHHC
Q 015765 332 LCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~ 351 (401)
+.+.|+.++|.++|=+....
T Consensus 101 L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHH
Confidence 88889999998888766543
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.41 E-value=35 Score=26.53 Aligned_cols=18 Identities=17% Similarity=-0.108 Sum_probs=9.2
Q ss_pred HHHHccCCHHHHHHHHHH
Q 015765 365 TGLASISKVAEANELIGL 382 (401)
Q Consensus 365 ~~~~~~g~~~~a~~~~~~ 382 (401)
....+.|+.+-+..+++.
T Consensus 215 ~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 334455666555554443
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.62 E-value=63 Score=23.64 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 015765 258 RIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~ 278 (401)
++.=|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444444444444444444
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=53.47 E-value=25 Score=26.66 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=10.0
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 015765 155 GCILSKNYEEVKRIFTEF 172 (401)
Q Consensus 155 ~~~~~~~~~~a~~~~~~~ 172 (401)
..+..|+.+....++..-
T Consensus 11 ~A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT
T ss_pred HHHHhccHHHHHHHHHcC
Confidence 334556666666665443
No 296
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.64 E-value=53 Score=23.69 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444444444445555555554444444444444444444443
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=52.24 E-value=14 Score=29.68 Aligned_cols=187 Identities=9% Similarity=0.039 Sum_probs=88.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHH-------hHHHHHHHHH--ccCChHHHHHHHHHHHHcC---------CC-
Q 015765 189 IKSFCESGDSSSVYSILAEMRRKSIRPNAT-------DFGLLLAGFY--KEHKYEDVGKVLQMMEKCG---------IA- 249 (401)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~- 249 (401)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.+.+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 444566788888777777776666554432 2233443332 5677776666666543311 11
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-----------------HHHHHHHHHhcCCChHHHHHHHHH
Q 015765 250 SGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLD-----------------TYKHLIHGFGKEGNLEGAKKLFAS 312 (401)
Q Consensus 250 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------------~~~~li~~~~~~~~~~~a~~~~~~ 312 (401)
.+..-.+ .+...+..|+.+-+.-+ .+.|..++.. -.+.|..+ +..|+.+ +.+.
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~L----l~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A-~~~g~~~----~v~~ 158 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELL----VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA-ACTNQPH----IVHY 158 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH-HHTTCHH----HHHH
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHH----HhCCCCcCccccccccCcccccccccCCCCHHHHH-HHcCCHH----HHHH
Confidence 0111222 33344556776644444 4455444432 22333333 4456644 3444
Q ss_pred HHh---CCCCCCH---hhHHHHHHHHHccC-C---HHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHccCC
Q 015765 313 MTN---GGCEPDS---YCFFMFTYFLCQGG-E---YETALKVCRASMAKGWV----------PHFSTMKSLVTGLASISK 372 (401)
Q Consensus 313 m~~---~~~~~~~---~~~~~li~~~~~~g-~---~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~ 372 (401)
+.+ .|..++. .-.+.|..++.... . .+...++++.+.+.|.. .|..-.+. +...++.|+
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~ 237 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKTGK 237 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHTTC
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHcCC
Confidence 445 4544432 22334443332222 1 22223444444444322 12222223 334456788
Q ss_pred HHHHHHHHHHHHhc
Q 015765 373 VAEANELIGLMKKR 386 (401)
Q Consensus 373 ~~~a~~~~~~~~~~ 386 (401)
.+-+..++++-...
T Consensus 238 ~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 238 IGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc
Confidence 88888888776654
No 298
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.57 E-value=88 Score=24.43 Aligned_cols=49 Identities=6% Similarity=0.066 Sum_probs=25.4
Q ss_pred HHHHHHHHHhchhhcCCCCCHH-hH-----HHHHHHHHhcCChhHHHHHHHHHHh
Q 015765 162 YEEVKRIFTEFPKVYGIEPNSE-TY-----NKVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~-~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
.+.|+.+|+.+.+...+..+.. .. -..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 4667777777754431111110 11 1223346667777777777776654
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.07 E-value=47 Score=27.09 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=6.8
Q ss_pred HHhCCCchHHHHHHH
Q 015765 85 LSQANHFNAISQLLE 99 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~ 99 (401)
.+..|+.+-+..+++
T Consensus 38 A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 38 AIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344555544444443
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.86 E-value=65 Score=22.72 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=11.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 015765 257 IRIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~ 278 (401)
.++.=|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444455555555555555554
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.54 E-value=48 Score=24.12 Aligned_cols=45 Identities=7% Similarity=0.125 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444444455555555554444444444444444444444
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.40 E-value=71 Score=27.39 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCCH
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM--IDHAMQTFEEMDKYGLRQSV 146 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 146 (401)
....++.-|...|+.++|.+.++++. .|.+.+ .-+...+..+.-+.++ .+...+++..+...|+-...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~-~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHcc-CCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 45777888888999999999999986 343333 3333333334433332 45677777777777654433
No 303
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.90 E-value=53 Score=24.29 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=29.3
Q ss_pred HHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHccC
Q 015765 164 EVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRK--SIRPNATDFGLLLAGFYKEH 231 (401)
Q Consensus 164 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 231 (401)
.+.+-+.+..++.|+..+.. -..++..+...++.-.|.++++.+.+. +...+..|.---++.+...|
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33333444434445444332 223344444444555555555555544 33334444333334444333
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.65 E-value=46 Score=25.05 Aligned_cols=17 Identities=6% Similarity=0.327 Sum_probs=10.1
Q ss_pred HHHhCCCchHHHHHHHH
Q 015765 84 KLSQANHFNAISQLLEE 100 (401)
Q Consensus 84 ~~~~~~~~~~a~~~~~~ 100 (401)
..+..|+.+....++..
T Consensus 11 ~A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 11 EAANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHHTTCHHHHHHHHTC
T ss_pred HHHHhccHHHHHHHHHc
Confidence 34556666666666654
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=46.69 E-value=1e+02 Score=24.07 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHhchh
Q 015765 127 IDHAMQTFEEMDKYGLRQSVD-------ALNALLLGCILSKNYEEVKRIFTEFPK 174 (401)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 174 (401)
.+.|+.+|+.+.+.--.++.. .-...+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 678888888887653111211 112344578899999999999999864
No 306
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=46.64 E-value=90 Score=23.44 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=29.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCch---hHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCcC
Q 015765 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGVN---VYNIRIQSLCK-LKRSEEAKALLDGMLSRGIKPN 286 (401)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~p~ 286 (401)
.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..+.....++.+.+.+.|..++
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 3444455555555556666666666555432 11222222111 2233344455555555554443
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.56 E-value=2.3e+02 Score=28.13 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-----------------
Q 015765 81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR----------------- 143 (401)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------------- 143 (401)
++..|...|.++-|.++...+. .. ...--.+..+|...|++++|...|++.. .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~---~t---~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN---SD---PIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC---SS---HHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC---CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccC
Confidence 4555566666665555443322 11 1112234555666667777766666542 1111
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCH----HhHHHHHHHHHhcC
Q 015765 144 ------QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNS----ETYNKVIKSFCESG 196 (401)
Q Consensus 144 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 196 (401)
....-|..++..+-+.+.++.+.++-+...+... +-|. ..|+.+.++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 1123577888888899988888877776654321 1122 25667777766554
No 308
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=46.08 E-value=39 Score=19.09 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=8.1
Q ss_pred chHHHHHHHHhhhCCCCC
Q 015765 91 FNAISQLLEELKTRPDLR 108 (401)
Q Consensus 91 ~~~a~~~~~~~~~~~~~~ 108 (401)
+..|+++++.+...+.+|
T Consensus 9 v~RaiELle~lq~sgevp 26 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVN 26 (53)
T ss_dssp HHHHHHHHHHHGGGSSST
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 344445555444444333
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.92 E-value=55 Score=23.27 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHh
Q 015765 267 RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFG 298 (401)
Q Consensus 267 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 298 (401)
..-.|.++++.+.+.+...+..|...-+..+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 64 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFE 64 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 33444444444444433334333333333333
No 310
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.32 E-value=42 Score=24.27 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765 257 IRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 257 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
.++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 23 ~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 23 LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3334443334 4455555555555544444444444444444433
No 311
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=44.71 E-value=34 Score=20.75 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=33.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 015765 324 CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISK 372 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 372 (401)
.++.++..++...-.+.++..++++.+.| ..+...|..-++.+++..-
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF 51 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQF 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 45666677777777777888888877777 5566777666666665443
No 312
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.20 E-value=58 Score=23.66 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=19.7
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765 258 RIQSLCKLK-RSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 258 ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333333 34445555555555444444444444444444444
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.03 E-value=37 Score=26.41 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=8.7
Q ss_pred HHhCCCchHHHHHHHH
Q 015765 85 LSQANHFNAISQLLEE 100 (401)
Q Consensus 85 ~~~~~~~~~a~~~~~~ 100 (401)
.++.|+++....+++.
T Consensus 16 A~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 16 ATQYGIYERCRELVEA 31 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHc
Confidence 4456666555555543
No 314
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=42.64 E-value=1.1e+02 Score=23.08 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 015765 235 DVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284 (401)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (401)
.+..++..+.+.|+-.|...-...+....+.|.+ ....+-.++..+|+.
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 4445555666666555544444555544443322 224444555566653
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.13 E-value=69 Score=23.65 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=26.6
Q ss_pred HHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHhcCC
Q 015765 244 EKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSR--GIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 244 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~ 301 (401)
.+.|+..+. --..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 25 ~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444322 2344445555544555555555555544 43444444444444444444
No 316
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.80 E-value=97 Score=22.43 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=37.2
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015765 276 DGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE 337 (401)
Q Consensus 276 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (401)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 345667766443 2334455555566677888888888876655666666666666666654
No 317
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.13 E-value=2e+02 Score=25.75 Aligned_cols=64 Identities=16% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 015765 147 DALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKS 212 (401)
Q Consensus 147 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 212 (401)
..|..-.+.+...|++++|-++--..++ |+-.+..|.+.+-..=...|+..-.+.+|..+.+.|
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 3343344444455555555555444432 333344443333332233344444555555554443
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=40.93 E-value=2e+02 Score=25.73 Aligned_cols=142 Identities=12% Similarity=0.052 Sum_probs=85.2
Q ss_pred cCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHH
Q 015765 51 SESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHA 130 (401)
Q Consensus 51 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 130 (401)
...+++-|+.+.... +.+.-...|..-.+.+...|++++|..+--... .+ ...+..+.+.+-..=...|+..-.
T Consensus 341 ~l~n~~lA~~lA~R~----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~g-iLRt~~Ti~rFk~vp~~pgq~spl 414 (494)
T 1bpo_A 341 VLQNPDLALRMAVRN----NLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KG-ILRTPDTIRRFQSVPAQPGQTSPL 414 (494)
T ss_dssp TTCCHHHHHHHHHHT----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GG-SSCSHHHHHHHTTSCCCTTSCCHH
T ss_pred ccCCHHHHHHHHHhc----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cc-cccCHHHHHHHhcCCCCCCCCCHH
Confidence 346777777776543 455556678888888899999999988876654 22 233355555554444445666667
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765 131 MQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
+.+|..+.+.| ..+..----+++.-..+|+.+-.++.+.+= .+..+...=..+ +..+..-|+.+|.+.
T Consensus 415 L~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~----KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 415 LQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED----KLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT----CSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC----CccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 77788777777 445444444566666677766665555432 334444322221 334566666666554
No 319
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.64 E-value=2.3e+02 Score=26.43 Aligned_cols=179 Identities=8% Similarity=-0.067 Sum_probs=102.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHhHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHH
Q 015765 196 GDSSSVYSILAEMRRKSIRPNATDFG----LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEA 271 (401)
Q Consensus 196 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 271 (401)
.+.+.|...+....+.+ ..+..... .+.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37788888888876543 22333222 22223334443445555555544332 2333334444455577899999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhC------------CCCC-------C---Hh-----h
Q 015765 272 KALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNG------------GCEP-------D---SY-----C 324 (401)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------~~~~-------~---~~-----~ 324 (401)
...|+.|..... .......-+.+++...|+.++|..+|..+.+. |..+ + .. .
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 999888765421 23444556677777889999888888776542 2111 0 00 0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 015765 325 FFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIG 381 (401)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 381 (401)
-..-+..+...|....|...+..+... .+......+.......|..+.++....
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 112344567788888888888877654 233334455555566777776665443
No 320
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.86 E-value=2.1e+02 Score=25.38 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=75.4
Q ss_pred ChhHHHHHHHHHHhC--------CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCchhHHHHHHHHHh
Q 015765 197 DSSSVYSILAEMRRK--------SIRPNATDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIA----SGVNVYNIRIQSLCK 264 (401)
Q Consensus 197 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~ 264 (401)
..++...+++..... ++..+......+... -.|+..++..+++.+...... ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 345566666666542 233455666666655 467888888888777554221 112222222222211
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH---hcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC----
Q 015765 265 LKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF---GKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE---- 337 (401)
Q Consensus 265 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---- 337 (401)
... . ...+......++.++ .+.++.+.|+.++.+|.+.|..|....-..++.+...-|.
T Consensus 244 ~~~-------------~-~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA-------------R-FDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC-------------C----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh-------------c-cCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0 000111122233333 2457899999999999999877766555566666655553
Q ss_pred -HHHHHHHHHHHHHCCC
Q 015765 338 -YETALKVCRASMAKGW 353 (401)
Q Consensus 338 -~~~a~~~~~~~~~~~~ 353 (401)
...|...++....-|.
T Consensus 310 a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 3455566666666674
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.82 E-value=1.2e+02 Score=22.49 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhCCCCC--CHhhHHHHHH-H-----HHccCCHHHHHHHHHHHHHC
Q 015765 290 YKHLIHGFGKEGNLEGAKKLFASMTNGGCEP--DSYCFFMFTY-F-----LCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 290 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~~ 351 (401)
|..-+..| ..|++-+|.++++..-...-.+ ....|..||. . ..+.|+...|..++.+....
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33334444 4488889988888887664445 4556777776 2 24578999999998887663
No 322
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=38.72 E-value=63 Score=19.59 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765 113 FHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK 160 (401)
Q Consensus 113 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (401)
.++.++..++...-.++++..+++..+.| ..+..+|---.+.+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 45667777777777888888888888877 567777766666665543
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.07 E-value=1.2e+02 Score=22.42 Aligned_cols=61 Identities=7% Similarity=-0.027 Sum_probs=45.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HHccCCHHHHHHHHHHHHhc
Q 015765 325 FFMFTYFLCQGGEYETALKVCRASMAKGWVP--HFSTMKSLVT-G-----LASISKVAEANELIGLMKKR 386 (401)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~~ 386 (401)
|...+..+ ..|++=+|.++++..-...-.+ ....|..||+ . ..+.|+...|..++.+...+
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 44444444 4599999999999988775455 5567777777 2 24579999999999998876
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.65 E-value=1e+02 Score=21.75 Aligned_cols=61 Identities=10% Similarity=0.160 Sum_probs=39.5
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 015765 277 GMLSRGIKPNLDTYKHLIHGFGKEG-NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY 338 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (401)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3566777765432 33455555555 6778999999998877666776666666666666543
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.39 E-value=1.1e+02 Score=21.89 Aligned_cols=60 Identities=5% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHCCCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCC
Q 015765 277 GMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGE 337 (401)
Q Consensus 277 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (401)
.+.+.|.+++..= ..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 4556666655432 23344444455566777777777766555555555555566655553
No 326
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.04 E-value=1.2e+02 Score=22.19 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 015765 233 YEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284 (401)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (401)
.+.+..+++.+.+.|+-.|...-...+....+.| .....+-.++..+|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3445556666666666555554455555554433 2344555666666664
No 327
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=37.02 E-value=1.6e+02 Score=23.58 Aligned_cols=155 Identities=12% Similarity=0.075 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHhcCC-----HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 015765 144 QSVDALNALLLGCILSKN-----YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNAT 218 (401)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 218 (401)
++..+-...+.++...+. ...+...+..+.+ .++...-...+.++.+.|+.+ +...+..+.+ .++..
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 174 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF----DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGD 174 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT----CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh----CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHH
Confidence 344444444444444331 2333333333322 345554455555555555432 3333333333 23444
Q ss_pred hHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 015765 219 DFGLLLAGFYKEH-KYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGF 297 (401)
Q Consensus 219 ~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 297 (401)
.-...+.++...+ +...+...+..+.+ .++..+-...+.++.+.|+......+.+.+.+ ++ .-...+.++
T Consensus 175 vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL 245 (280)
T 1oyz_A 175 VRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAA 245 (280)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHH
Confidence 4444444444443 12334444433333 23455555666666666654444444443332 12 122334445
Q ss_pred hcCCChHHHHHHHHHHHhC
Q 015765 298 GKEGNLEGAKKLFASMTNG 316 (401)
Q Consensus 298 ~~~~~~~~a~~~~~~m~~~ 316 (401)
.+.|+. .+...+..+.+.
T Consensus 246 ~~i~~~-~~~~~L~~~l~~ 263 (280)
T 1oyz_A 246 GELGDK-TLLPVLDTMLYK 263 (280)
T ss_dssp HHHCCG-GGHHHHHHHHTT
T ss_pred HhcCch-hhhHHHHHHHhc
Confidence 555553 455555555543
No 328
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=36.77 E-value=92 Score=20.70 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015765 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG 336 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (401)
.|.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 45556666666666666666666666665544
No 329
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=36.60 E-value=1.5e+02 Score=23.17 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 015765 234 EDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIK 284 (401)
Q Consensus 234 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 284 (401)
+.+..+++.+.+.|+-.|...-...+....+.+.+ ....+-.++..+|+.
T Consensus 93 e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 93 EFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 44556666666666665555445555554442211 344555666666664
No 330
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=36.57 E-value=1.9e+02 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhch
Q 015765 149 LNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 149 ~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4556667777777777777777773
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.52 E-value=3.3e+02 Score=27.03 Aligned_cols=48 Identities=8% Similarity=-0.119 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHhcCC
Q 015765 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL----DTYKHLIHGFGKEG 301 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~ 301 (401)
-|..++..+-+.+-++.+.++-+...+.--.-|. ..|+.++++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778888899999999998888877764222222 35677777766544
No 332
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.96 E-value=1.1e+02 Score=22.04 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=40.2
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 015765 276 DGMLSRGIKPNLDTYKHLIHGFGKEG-NLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEY 338 (401)
Q Consensus 276 ~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (401)
+.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566777765432 33445555555 6677888998888876666766666666777666643
No 333
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.62 E-value=2.9e+02 Score=26.07 Aligned_cols=16 Identities=6% Similarity=0.424 Sum_probs=10.4
Q ss_pred HccCChHHHHHHHHHH
Q 015765 228 YKEHKYEDVGKVLQMM 243 (401)
Q Consensus 228 ~~~~~~~~a~~~~~~~ 243 (401)
...|+++.|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5667777776665553
No 334
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.16 E-value=1.5e+02 Score=22.52 Aligned_cols=141 Identities=10% Similarity=-0.041 Sum_probs=63.7
Q ss_pred cHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 015765 74 DRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALL 153 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 153 (401)
+...-...+..+++.|..+..-.+.+ +...+ +..+-...+.++.+.+..+ +...+..+.. .++..+-...+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~~~----~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIK-ALKDE----DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCS----CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHH-HHcCC----CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444555556666665333333333 32221 2445555555666655532 3333333332 34555555556
Q ss_pred HHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC
Q 015765 154 LGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK 232 (401)
Q Consensus 154 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 232 (401)
.++.+.++.+....+.+ +.+ .++...-...+.++.+.++.+ +...+..+.+ .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~~~~~L~~-~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDERAVEPLIK-ALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGGGHHHHHH-HTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHHHHHHHHH-HHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 66666555433322322 222 345544445555555555432 3333333332 2344444444555555444
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.42 E-value=76 Score=24.63 Aligned_cols=16 Identities=19% Similarity=0.063 Sum_probs=7.4
Q ss_pred ccCCHHHHHHHHHHHH
Q 015765 369 SISKVAEANELIGLMK 384 (401)
Q Consensus 369 ~~g~~~~a~~~~~~~~ 384 (401)
..|+...+.++.+.+.
T Consensus 219 ~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQ 234 (237)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444444444444443
No 336
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.38 E-value=86 Score=19.62 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765 304 EGAKKLFASMTNGGCEPDSYCFFMFTYFL 332 (401)
Q Consensus 304 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (401)
-.+.++++.+.+.+...+..|....+..+
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L 62 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 33444444444433333333333333333
No 337
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=34.20 E-value=78 Score=24.42 Aligned_cols=112 Identities=13% Similarity=0.101 Sum_probs=51.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHH
Q 015765 152 LLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA---TDFGLLLAGFY 228 (401)
Q Consensus 152 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~ 228 (401)
.+...+..|+.+....++..-.... ..++..-.+ .+...+..|+.+-+ +.+.+.|..++. ..++.+ ...+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLA-TRTDQDSRT-ALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPL-HIAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCC-HHHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHH-HHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCC-HHHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHH-HHHH
Confidence 3555677888888888877653211 122322223 33344556665443 334444544432 222222 3334
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCchh--HHHHHHHHHhcCCHHHHHHH
Q 015765 229 KEHKYEDVGKVLQMMEKCGIASGVNV--YNIRIQSLCKLKRSEEAKAL 274 (401)
Q Consensus 229 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~ 274 (401)
..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 125 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 455554 3444445554433211 11233444455666544433
No 338
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.20 E-value=85 Score=25.50 Aligned_cols=205 Identities=11% Similarity=-0.035 Sum_probs=103.7
Q ss_pred HHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHc
Q 015765 153 LLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNA---TDFGLLLAGFYK 229 (401)
Q Consensus 153 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~ 229 (401)
+...+..|+.+-+..+++.-. .++...-.+.+...+..|+.+-+..+ .+.|..++. .-.+ .+...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~-----~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t-~L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGA-----LKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNT-ALYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTG-----GGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCc-HHHHHHH
Confidence 444556788887777776532 23322223445555667776544444 445654442 2222 3334456
Q ss_pred cCChHHHHHHHHHHHHcCCCCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CH-HHHHHHHHHHhcCCChH
Q 015765 230 EHKYEDVGKVLQMMEKCGIASGV---NVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKP-NL-DTYKHLIHGFGKEGNLE 304 (401)
Q Consensus 230 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~-~~~~~li~~~~~~~~~~ 304 (401)
.|+.+-+..+++ .|..++. .-+.+.+...+..|+.+-+.. +.+.|..+ +. ...+.|. ..+..|+.+
T Consensus 105 ~g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~-~A~~~g~~~ 175 (285)
T 3kea_A 105 SGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIH-ITIKNGHVD 175 (285)
T ss_dssp TTCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHH-HHHHTTCHH
T ss_pred cCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHH-HHHHcChHH
Confidence 677665544444 3433332 222345555566777654444 44444332 22 3344444 445677777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 015765 305 GAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMK 384 (401)
Q Consensus 305 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 384 (401)
-+.-+++.-..-.. .+..-.+..+...+..|+. ++.+.+.+.|..++.... .-...|+.+-+.-+++.-.
T Consensus 176 ~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 176 MMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp HHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcCC
Confidence 66666655443221 1211222223333445654 445556677777766542 1245677777777776654
Q ss_pred hc
Q 015765 385 KR 386 (401)
Q Consensus 385 ~~ 386 (401)
+.
T Consensus 246 ~~ 247 (285)
T 3kea_A 246 EY 247 (285)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 339
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=33.94 E-value=49 Score=20.87 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765 167 RIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
+++.+++ +++|++.||+-+...+-+..-..+++.+..++
T Consensus 24 ~LL~kIP---nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIP---NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSS---SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCC---CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555 56778888877776655544445555555443
No 340
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=33.19 E-value=1.5e+02 Score=25.39 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 015765 254 VYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG-NLEGAKKLFASMTNGGCEPDSYCFFMFTYFL 332 (401)
Q Consensus 254 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (401)
....++.=|...|+.++|.+.++++..-+.--....+..+..++-+.. ..+.+..++..+...|+-+.......+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ll 93 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_pred HccCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 015765 333 CQGGEYE----TALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGLMKK 385 (401)
Q Consensus 333 ~~~g~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 385 (401)
....+.. .|..++.++...-+.-+......+...+...+...-...+++.+.+
T Consensus 94 e~l~Dl~iDiP~a~~~la~f~ar~i~~~~l~~~~l~~~l~~G~~~~l~l~vl~~~~k 150 (364)
T 3l6a_A 94 DQCPKLEVDIPLVKSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAK 150 (364)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTSSCHHHHHHHHGGGTTTTHHHHHHHHHHH
T ss_pred hhChHhccccccHHHHHHHHHHHHHHcCCCCHHHHHHHhcccchHHHHHHHHHHHHH
No 341
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.17 E-value=3.7e+02 Score=26.55 Aligned_cols=166 Identities=5% Similarity=-0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHccCC---hHHHHHHHHHHHHc--CCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 015765 221 GLLLAGFYKEHK---YEDVGKVLQMMEKC--GIASGVNVYNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIH 295 (401)
Q Consensus 221 ~~ll~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 295 (401)
..++...|..|+ .+.|.+.|+..... +.+.....-..+...-.+.|..++-..+++...... +..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHH
Q ss_pred HHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCC
Q 015765 296 GFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK---GWVPHFSTMKSLVTGLASISK 372 (401)
Q Consensus 296 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~ 372 (401)
+++...+.+...++++.....+..........+..........+.|.+++.+=.+. .+......+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHhcCCC
Q 015765 373 VAEANELIGLMKKRFPK 389 (401)
Q Consensus 373 ~~~a~~~~~~~~~~~~~ 389 (401)
-++-.+-++...+..+.
T Consensus 847 t~~~~~~~~~f~~~~~~ 863 (909)
T 4fke_A 847 SEFELQQLEQFKKNNMD 863 (909)
T ss_dssp SHHHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHhhCCc
No 342
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.74 E-value=1.5e+02 Score=24.91 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=36.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-CCCCc---CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhH--HHHHHHH
Q 015765 259 IQSLCKLKRSEEAKALLDGMLS-RGIKP---NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCF--FMFTYFL 332 (401)
Q Consensus 259 l~~~~~~~~~~~a~~~~~~~~~-~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~ 332 (401)
+...+..|+.+-+..+++.-.. .+..+ |..-.+.|..+ +..|+.+ +.+.+++.|..++.... .+-+...
T Consensus 177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA-ILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHH-HTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 3344456776655555543221 00001 11222333333 3455544 34444555555442211 1223334
Q ss_pred HccCCHHHHHHHHHH
Q 015765 333 CQGGEYETALKVCRA 347 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~ 347 (401)
+..|..+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 456777666666654
No 343
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.54 E-value=1.7e+02 Score=22.49 Aligned_cols=36 Identities=11% Similarity=-0.027 Sum_probs=22.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (401)
+-.|.+.|+-++-+|++.|..|....-..++-+.-.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 346777777777777777765555544444444433
No 344
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=32.06 E-value=21 Score=25.13 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=26.9
Q ss_pred CCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh
Q 015765 70 ESPLDRMAFSIAVSKLSQANHFNAISQLLEELK 102 (401)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (401)
+.+-|...+...+..+...++++++..+++.+.
T Consensus 55 P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~ 87 (124)
T 3vu7_H 55 PMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMK 87 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 355678888888888889999999988877765
No 345
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Probab=32.00 E-value=54 Score=24.84 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=22.0
Q ss_pred HHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhh
Q 015765 57 RILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELK 102 (401)
Q Consensus 57 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 102 (401)
...++|.......+-..+..-+..++..+...-.-+++..+|+.+-
T Consensus 38 ~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D 83 (204)
T 3e3r_A 38 GLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWD 83 (204)
T ss_dssp --CHHHHHHCTTCCSSBCHHHHHHHHHTTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 3344555554443334445555555544433334455666666664
No 346
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.67 E-value=1.2e+02 Score=27.45 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCC-CCCH--hhH-HHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765 287 LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGC-EPDS--YCF-FMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 287 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~-~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
...+|.+++.|...+.++.|..+..+..--.. .+|. ..| -.+...+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46678888888888888888888887752100 1111 112 12344556678888888888777654
No 347
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.23 E-value=1.8e+02 Score=24.50 Aligned_cols=217 Identities=12% Similarity=0.038 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHh--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH
Q 015765 144 QSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSET--YNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG 221 (401)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (401)
.|..-++.| ...+..|+.+.+..+++. |..++... -.+.+...+..|+.+-+..+++ .|..++...-.
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll~~-----g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLIET-----GVSPTIQNRFGCTALHLACKFGCVDTAKYLAS----VGEVHSLWHGQ 85 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH----HCCCCCCBTTB
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHHHc-----CCCccccCCCCCcHHHHHHHcCCHHHHHHHHH----CCCCccccCCC
Confidence 345445444 445567888877777754 33333221 1234455566677655444443 34433332222
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCc--------------------hhHHHHHHHHHhcC--CHHHHHHHHHHHH
Q 015765 222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGV--------------------NVYNIRIQSLCKLK--RSEEAKALLDGML 279 (401)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~ 279 (401)
+.+...+..|+.+-+..+++.....|..++. .-.+ .+...+..| +.+-+..+++
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~Ll~--- 161 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKILVQ--- 161 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHHHHH---
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHHHHH---
Confidence 3444456678888777777776665654432 1123 334445556 5554444443
Q ss_pred HCCCCcC---HHHHHHHHHHHhcCCChHHHHHHHHHHHh-CCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765 280 SRGIKPN---LDTYKHLIHGFGKEGNLEGAKKLFASMTN-GGCEPD---SYCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 280 ~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
.|..++ ....+.|..+ +..|+.+-+..+++.-.. .+..++ ..-.+. +...+..|..+-+. .+++.|
T Consensus 162 -~ga~~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~g 234 (364)
T 3ljn_A 162 -LGASPTAKDKADETPLMRA-MEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-LHWAILINWEDVAM----RFVEMG 234 (364)
T ss_dssp -HTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT-THHHHTTTCHHHHH----HHHTTT
T ss_pred -cCCCCcccCCCCCCHHHHH-HHcCCHHHHHHHHhcccccccccccccCCCCCcH-HHHHHHcCCHHHHH----HHHHcC
Confidence 344443 2334444444 456776655555543221 011122 122222 33445667765443 344555
Q ss_pred CCCCHH---HHHHHHHHHHccCCHHHHHHHHHH
Q 015765 353 WVPHFS---TMKSLVTGLASISKVAEANELIGL 382 (401)
Q Consensus 353 ~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~ 382 (401)
..++.. -.+.| ...+..|+.+-+..+++.
T Consensus 235 ad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 235 IDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 544322 22233 334456888777766665
No 348
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.00 E-value=1.8e+02 Score=22.38 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=30.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCC
Q 015765 194 ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK-----YEDVGKVLQMMEKCGIA 249 (401)
Q Consensus 194 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 249 (401)
+-.|.+.|+-++-+|.+.| .|....-..++-+.-.-|. ...|...++.....|.+
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3467777777777777777 5555555555555544442 22333444444555544
No 349
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=30.40 E-value=2.3e+02 Score=23.34 Aligned_cols=117 Identities=10% Similarity=0.101 Sum_probs=55.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCC---HHhHHHHH
Q 015765 116 HSIVLYGQANMIDHAMQTFEEMDKYGLRQ---SVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPN---SETYNKVI 189 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 189 (401)
..+...++.|+.+.+..++... +..+ +.. -.+.+...+..|+.+-+..+++. |..++ ..-+ +.+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~---~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~-----g~~~~~~~~~g~-t~L 95 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPL---NVNCHASDGR-KSTPLHLAAGYNRVRIVQLLLQH-----GADVHAKDKGGL-VPL 95 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTT---TTTCCCSSTT-CCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTCC-CHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhc---CCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHc-----CCCCCccCCCCC-cHH
Confidence 3444555778887777776532 2222 222 12344555667777666655543 22222 2222 233
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHH---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 015765 190 KSFCESGDSSSVYSILAEMRRKSIRPNAT---DFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASG 251 (401)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 251 (401)
...+..|+.+ +++.+.+.|..++.. -++ .+...+..|+.+- ++.+.+.|..++
T Consensus 96 ~~A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~ 151 (351)
T 3utm_A 96 HNACSYGHYE----VTELLLKHGACVNAMDLWQFT-PLHEAASKNRVEV----CSLLLSHGADPT 151 (351)
T ss_dssp HHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred HHHHHCCCHH----HHHHHHHCCCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHHcCCCCc
Confidence 3445566654 344444555444332 222 3333445566543 344445554443
No 350
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.38 E-value=1.2e+02 Score=21.25 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=24.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccC
Q 015765 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEH 231 (401)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 231 (401)
++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444445556666666666666554445555444445444444
No 351
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=30.35 E-value=40 Score=20.02 Aligned_cols=8 Identities=13% Similarity=0.011 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 015765 201 VYSILAEM 208 (401)
Q Consensus 201 a~~~~~~~ 208 (401)
|.+.|.+|
T Consensus 5 ae~aF~~l 12 (59)
T 2b7e_A 5 AEKEFITM 12 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 352
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=29.98 E-value=58 Score=19.29 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=5.8
Q ss_pred CChhHHHHHHHHHH
Q 015765 196 GDSSSVYSILAEMR 209 (401)
Q Consensus 196 ~~~~~a~~~~~~~~ 209 (401)
|+.+.|+..+-+|.
T Consensus 37 gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 37 GNKDAAINSLLQMG 50 (59)
T ss_dssp TCHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHcCc
Confidence 34444444444433
No 353
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.70 E-value=1.4e+02 Score=21.39 Aligned_cols=33 Identities=9% Similarity=-0.097 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765 128 DHAMQTFEEMDKYGLRQSVDALNALLLGCILSK 160 (401)
Q Consensus 128 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (401)
-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444433333333333333333333
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.64 E-value=87 Score=21.99 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=20.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCC
Q 015765 258 RIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEG 301 (401)
Q Consensus 258 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 301 (401)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333334444445555555555444444444444444444444
No 355
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=29.03 E-value=3e+02 Score=24.31 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhCC
Q 015765 264 KLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNL-----EGAKKLFASMTNGG 317 (401)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~~ 317 (401)
+.++.+.|...+.+|.+.|..|....-..++.+....|.- ..|...++....-|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 4578999999999999998776655555555555555532 23444444444445
No 356
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.86 E-value=1e+02 Score=22.01 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=20.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015765 293 LIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG 336 (401)
Q Consensus 293 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (401)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444555555555555544444444444444444444
No 357
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.37 E-value=1.7e+02 Score=22.34 Aligned_cols=19 Identities=5% Similarity=0.284 Sum_probs=11.1
Q ss_pred HHHHHhCCCchHHHHHHHH
Q 015765 82 VSKLSQANHFNAISQLLEE 100 (401)
Q Consensus 82 ~~~~~~~~~~~~a~~~~~~ 100 (401)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666666666654
No 358
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=28.34 E-value=88 Score=17.88 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 015765 342 LKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELI 380 (401)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 380 (401)
.+.+..|...|+...---...|+.. +.|++..|+.++
T Consensus 11 ~~al~qMl~MGF~negGWLt~LL~~--k~gDI~~aLD~l 47 (52)
T 1q02_A 11 IESLSQMLSMGFSDEGGWLTRLLQT--KNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHTTTCCCTTSHHHHHHHH--TTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCccccHHHHHHHH--ccCCHHHHHHHh
Confidence 3444556666666444444555533 567777766654
No 359
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=28.09 E-value=73 Score=20.41 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=19.2
Q ss_pred HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhc
Q 015765 162 YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCES 195 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 195 (401)
.++|...|.+|.+..++.|+. +|...+...+..
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~D 48 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVFD 48 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHccC
Confidence 466677777777666665543 455555444433
No 360
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=28.08 E-value=1.5e+02 Score=20.40 Aligned_cols=68 Identities=9% Similarity=0.137 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChh
Q 015765 126 MIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSS 199 (401)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (401)
.+.+|+.-+++..+. ++|......++..+-.. ++.+.++.+...+..|+ ++.++...+....+.|-++
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~ 70 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLP 70 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCC
Confidence 345555555555443 33444444444433322 34455555555444444 2334445555555555443
No 361
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=27.89 E-value=1.8e+02 Score=21.27 Aligned_cols=132 Identities=10% Similarity=0.092 Sum_probs=62.0
Q ss_pred cHhHHHHHHHHHHhC-CCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHH
Q 015765 74 DRMAFSIAVSKLSQA-NHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYG-LRQSVDALNA 151 (401)
Q Consensus 74 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 151 (401)
+..-+..++..+... .....+..+|+.+-..++-.-+..-+..++.........+....+|+.+-..| -..+..-+..
T Consensus 37 ~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~ 116 (183)
T 1s6c_A 37 NEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMD 116 (183)
T ss_dssp CHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCTTCSSCEEHHHHHH
T ss_pred CHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 444444444444333 23345556666654332222223333334443333344455666666654322 1234444444
Q ss_pred HHHHHH-hcCC-----------HHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765 152 LLLGCI-LSKN-----------YEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 152 l~~~~~-~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
++.... ..|. .+.+..+|+.+-.. .-...++.-++..+.+...+-..+..|+.+
T Consensus 117 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d---~dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 117 IVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKN---KDGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHTC-----------CHHHHHHHHHHHCTT---CSSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCC---CCCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 443321 1121 25666777766322 223456666666666665566666666543
No 362
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=27.08 E-value=3.6e+02 Score=24.53 Aligned_cols=31 Identities=0% Similarity=0.009 Sum_probs=18.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 015765 324 CFFMFTYFLCQGGEYETALKVCRASMAKGWV 354 (401)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 354 (401)
....+-..|.+.|++-+|.+++..+...+..
T Consensus 219 ~~dLLWryy~k~~~~~~AA~VL~~LA~s~~~ 249 (525)
T 3i5p_A 219 ISNILWVYYSRRSKFFESAEILYRLATSNFD 249 (525)
T ss_dssp HHHHHHTHHHHCCSHHHHHHHHHHHHSSSSC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhCCCC
Confidence 4445555666666666666666666655433
No 363
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=26.94 E-value=1.5e+02 Score=22.85 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=9.0
Q ss_pred HHHhCCCchHHHHHHHHh
Q 015765 84 KLSQANHFNAISQLLEEL 101 (401)
Q Consensus 84 ~~~~~~~~~~a~~~~~~~ 101 (401)
.|.+.|.+++|.+++++.
T Consensus 126 VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHH
Confidence 444555555555555543
No 364
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.87 E-value=2.1e+02 Score=21.83 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=6.3
Q ss_pred ccCCHHHHHHHHHH
Q 015765 334 QGGEYETALKVCRA 347 (401)
Q Consensus 334 ~~g~~~~a~~~~~~ 347 (401)
..|+.+-+..+++.
T Consensus 206 ~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 206 VEGNIVMFQHLMQK 219 (232)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhc
Confidence 44554444444443
No 365
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=26.13 E-value=80 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=9.3
Q ss_pred HHHHccCChHHHHHHHH
Q 015765 225 AGFYKEHKYEDVGKVLQ 241 (401)
Q Consensus 225 ~~~~~~~~~~~a~~~~~ 241 (401)
...++.|+.+.+..+++
T Consensus 13 ~~A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 13 LEAAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHHHTCHHHHHHHCC
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 33455667666555543
No 366
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.02 E-value=41 Score=19.95 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=10.4
Q ss_pred CHHHHHHHHHhchhhcCCCCC
Q 015765 161 NYEEVKRIFTEFPKVYGIEPN 181 (401)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~ 181 (401)
|++.|...|.++.....++|+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGG
T ss_pred CHHHHHHHHHHHHHcCCCCHH
Confidence 555555555555433334443
No 367
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.78 E-value=2.2e+02 Score=21.70 Aligned_cols=24 Identities=0% Similarity=-0.157 Sum_probs=12.2
Q ss_pred HHHHccCChHHHHHHHHHHHHcCC
Q 015765 225 AGFYKEHKYEDVGKVLQMMEKCGI 248 (401)
Q Consensus 225 ~~~~~~~~~~~a~~~~~~~~~~~~ 248 (401)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334445555555555555555443
No 368
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.76 E-value=78 Score=26.83 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=35.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 015765 220 FGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKL-KRSEEAKALLDGMLSRGI 283 (401)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~ 283 (401)
...++.-|...|+.++|.+.++++...... ...+...+..++-+. ...+.+.+++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 566788888889999988888877432111 112222223332221 123456666777766654
No 369
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.70 E-value=85 Score=21.78 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=24.6
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 015765 309 LFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK 351 (401)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (401)
+|+.+.+..+.|+...--.-+..+...++++.|.++...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4455555555444333233334456678888888888777654
No 370
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.68 E-value=1.1e+02 Score=21.78 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=18.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHc
Q 015765 189 IKSFCESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYK 229 (401)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 229 (401)
+..+...++.-.|.++++.+.+.+...+..|.---++.+..
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e 60 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD 60 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33333334444555555555554444444443333333333
No 371
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.64 E-value=1.8e+02 Score=22.77 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=30.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHcc---CChHHHHHHHHHHHH
Q 015765 188 VIKSFCESGDSSSVYSILAEMRRKSIRPNA-------TDFGLLLAGFYKE---HKYEDVGKVLQMMEK 245 (401)
Q Consensus 188 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 245 (401)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.+..+ +.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 344556677777777777777666654433 223333333 333 566555555554443
No 372
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.59 E-value=2.4e+02 Score=21.95 Aligned_cols=65 Identities=20% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCHHhHHHHHHHHHccCC-----hHHHHHHHHHHHHcCCC
Q 015765 185 YNKVIKSFC---ESGDSSSVYSILAEMRRKSIRPNATDFGLLLAGFYKEHK-----YEDVGKVLQMMEKCGIA 249 (401)
Q Consensus 185 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 249 (401)
+--+|+++. +-.|.+.|+-++-+|++.|..|....-..++-+.-.-|. ...|...++.....|.+
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 444555553 346788888888888887766665555555555544442 22333444444555543
No 373
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.86 E-value=39 Score=26.93 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=36.5
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCchh-------HHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 015765 224 LAGFYKEHKYEDVGKVLQMMEKCGIASGVNV-------YNIRIQSLC--KLKRSEEAKALLDGMLS 280 (401)
Q Consensus 224 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~ 280 (401)
+...++.|+.+....+++.+.+.|...+... .+.+..+.. +.|+.+-+..+++.-..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence 4445677888888888888877766555332 234444432 56887777777776543
No 374
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.80 E-value=82 Score=23.41 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=15.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 015765 220 FGLLLAGFYKEHKYEDVGKVLQMME 244 (401)
Q Consensus 220 ~~~ll~~~~~~~~~~~a~~~~~~~~ 244 (401)
...++.-|...++.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455666666666666666666654
No 375
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.79 E-value=80 Score=23.69 Aligned_cols=55 Identities=9% Similarity=0.052 Sum_probs=39.0
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 015765 320 PDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAE 375 (401)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (401)
|....++.++..++...-++.++.++.++...| ..+..+|..-++.+++..-+.+
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~r 163 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLVR 163 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 444566778888887777888888888888877 4677777777777766544433
No 376
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.79 E-value=1.4e+02 Score=24.92 Aligned_cols=65 Identities=11% Similarity=0.157 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCC
Q 015765 77 AFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANM--IDHAMQTFEEMDKYGLR 143 (401)
Q Consensus 77 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~ 143 (401)
....++.-|...|+.++|.+.++++. .|.+.+ .-+...+..+.-+.++ .+.+.+++..+.+.|+-
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~-~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC-CCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 34566777777888888888888875 232222 2222222223322222 34556666666665543
No 377
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.60 E-value=3e+02 Score=22.70 Aligned_cols=38 Identities=5% Similarity=-0.109 Sum_probs=17.8
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 015765 333 CQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEAN 377 (401)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 377 (401)
+..|+.+ +.+.+++.|..++..+ . +...++.|+.+-+.
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~iv~ 318 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDHSLVK 318 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCHHHHH
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCHHHHH
Confidence 3455544 3333455666555443 2 23334556655433
No 378
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.28 E-value=3e+02 Score=22.66 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=70.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh--HHHHHHHHH
Q 015765 189 IKSFCESGDSSSVYSILAEMRRKSIRPNA---TDFGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV--YNIRIQSLC 263 (401)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~ 263 (401)
+...++.|+.+-+..++++ .|..++. ...+.+..++.. +.......+.+.+.+.|..++... -.+.+...+
T Consensus 172 L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~ 247 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 3344566776655444432 3433322 112222222221 222223344555566665554321 123344556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHH
Q 015765 264 KLKRSEEAKALLDGMLSRGIKP---NLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYET 340 (401)
Q Consensus 264 ~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (401)
..|+.+.+..+++. .|..+ |..-.+.|..+ ++.|+.+ +.+.+++.|..+|..+ .+...++.|+.+
T Consensus 248 ~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~- 315 (337)
T 4g8k_A 248 EKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS- 315 (337)
T ss_dssp HTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH-
T ss_pred HhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH-
Confidence 77887766655432 23222 22223444444 3456654 4455667787777654 233334566654
Q ss_pred HHHHHHHHHHCCCCCCH
Q 015765 341 ALKVCRASMAKGWVPHF 357 (401)
Q Consensus 341 a~~~~~~~~~~~~~~~~ 357 (401)
+.+.+++.|-.||.
T Consensus 316 ---iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 ---LVKVLLSHGAKEDF 329 (337)
T ss_dssp ---HHHHHHHTTCCC--
T ss_pred ---HHHHHHHCcCCCCC
Confidence 44555667766653
No 379
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.17 E-value=1.8e+02 Score=25.18 Aligned_cols=301 Identities=11% Similarity=0.070 Sum_probs=122.2
Q ss_pred HHHHHhcCCChhHHHHHhhhccCCCCCCccHhHHHHHHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhc
Q 015765 45 TIARLKSESNPFRILDICCGASLAPESPLDRMAFSIAVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQA 124 (401)
Q Consensus 45 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 124 (401)
.+......|+.+-+..+++. ...++.. +.. ....+...+..|+.+-+.-+++.-. ..+... . .-.+.+...+..
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~-~~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~-~-~g~t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQR-GASPNVS-NVK-VETPLHMAARAGHTEVAKYLLQNKA-KVNAKA-K-DDQTPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSC-CCCHHHHHHHHTCHHHHHHHHHHTC-CSSCCC-T-TSCCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCC-CCCHHHHHHHcCCHHHHHHHHhCCC-CCCCCC-C-CCCCHHHHHHHC
Confidence 34444555555544444433 1222111 221 2233455556677666666555422 111111 1 111233444456
Q ss_pred CChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 015765 125 NMIDHAMQTFEEMDKYGLRQSVD--ALNALLLGCILSKNYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVY 202 (401)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 202 (401)
|+.+-+.-+++. |..++.. .-...+...+..|+.+.+..+++.-.... ..+..-+ +.+...+..|+.+-+
T Consensus 91 g~~~~v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~-t~L~~A~~~g~~~~v- 162 (437)
T 1n11_A 91 GHTNMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGF-TPLHVAAKYGKVRVA- 162 (437)
T ss_dssp TCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSC-CHHHHHHHTTCHHHH-
T ss_pred CCHHHHHHHHhC----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCC-CHHHHHHHcCCHHHH-
Confidence 666554444443 3222211 01112334455677766666665432110 1111111 233344555665433
Q ss_pred HHHHHHHhCCCCCCHHh--HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCchh--HHHHHHHHHhcCCHHHHHHHHHHH
Q 015765 203 SILAEMRRKSIRPNATD--FGLLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNV--YNIRIQSLCKLKRSEEAKALLDGM 278 (401)
Q Consensus 203 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~ 278 (401)
+.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..++
T Consensus 163 ---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll--- 232 (437)
T 1n11_A 163 ---ELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL--- 232 (437)
T ss_dssp ---HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH---
T ss_pred ---HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH---
Confidence 33344454433211 112233344555554 3444455554433221 112334445566665444444
Q ss_pred HHCCCCcC---HHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 015765 279 LSRGIKPN---LDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS---YCFFMFTYFLCQGGEYETALKVCRASMAKG 352 (401)
Q Consensus 279 ~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 352 (401)
+.|..++ ....+.|..+ +..|+.+ +++.+.+.|..++. .-.+. +...+..|..+-+..++ +.|
T Consensus 233 -~~g~~~~~~~~~g~t~L~~A-~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g 301 (437)
T 1n11_A 233 -QYGGSANAESVQGVTPLHLA-AQEGHAE----MVALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLI----KHG 301 (437)
T ss_dssp -HTTCCTTCCCTTCCCHHHHH-HHTTCHH----HHHHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HHT
T ss_pred -HcCCCCCCCCCCCCCHHHHH-HHCCCHH----HHHHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCC
Confidence 3333222 1222233332 3455544 33444455544432 11222 33334566665444433 334
Q ss_pred CCCCH---HHHHHHHHHHHccCCHHHHHHHHH
Q 015765 353 WVPHF---STMKSLVTGLASISKVAEANELIG 381 (401)
Q Consensus 353 ~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 381 (401)
..++. .-.+.| ...+..|+.+-+..+++
T Consensus 302 ~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 302 VMVDATTRMGYTPL-HVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp CCTTCCCSSCCCHH-HHHHHSSCSHHHHHHHH
T ss_pred ccCCCCCCCCCCHH-HHHHHcCcHHHHHHHHh
Confidence 33322 112223 33345677765555544
No 380
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.13 E-value=91 Score=22.09 Aligned_cols=14 Identities=0% Similarity=0.060 Sum_probs=5.9
Q ss_pred hcCChHHHHHHHHH
Q 015765 123 QANMIDHAMQTFEE 136 (401)
Q Consensus 123 ~~~~~~~a~~~~~~ 136 (401)
..|+.+.+..+++.
T Consensus 11 ~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 11 ARGDVQEVRRLLHR 24 (156)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHh
Confidence 33444444444433
No 381
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=24.08 E-value=2.7e+02 Score=22.01 Aligned_cols=135 Identities=10% Similarity=0.114 Sum_probs=77.8
Q ss_pred CCccHhHHHHHHHHHHhCCC-chHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHH
Q 015765 71 SPLDRMAFSIAVSKLSQANH-FNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYG-LRQSVDA 148 (401)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 148 (401)
-..+...+..++..+...+. -..+..+|+.+-..++-.-+..-+..++..+......++...+|+.+-..| -..+..-
T Consensus 107 G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~E 186 (256)
T 2jul_A 107 GLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEE 186 (256)
T ss_dssp SSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHH
T ss_pred CcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHH
Confidence 34466666666666543333 345777888776333222223334444444444444566777777664322 1345555
Q ss_pred HHHHHHHHH-hcC-----------CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015765 149 LNALLLGCI-LSK-----------NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFCESGDSSSVYSILAEM 208 (401)
Q Consensus 149 ~~~l~~~~~-~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 208 (401)
+..++..+. ..| ..+.+..+|..+-.. .....++.-++..+.+...+-+++..|+.+
T Consensus 187 f~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d---~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 187 MLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN---QDGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCS---TTCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCC---CCCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 555555442 113 346778888887322 233467888888888888888888888765
No 382
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.80 E-value=1.1e+02 Score=21.22 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 015765 134 FEEMDKYGLRQSVDALNALLLGCILSKNYEEVKRIFTEFP 173 (401)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 173 (401)
|+.+.+..+.++...--.-+..+...++++.|.++...+.
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444443333222223334455566666666665554
No 383
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.82 E-value=64 Score=25.90 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=29.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-------CHHhHHHHHHHHH--ccCChHHHHHHHHHH
Q 015765 189 IKSFCESGDSSSVYSILAEMRRKSIRP-------NATDFGLLLAGFY--KEHKYEDVGKVLQMM 243 (401)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 243 (401)
+...++.|+.+.+..+++...+.+... +..-.+.|..++. +.|+.+-+..+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 344456677777777777665554322 2233344444443 346666666555553
No 384
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=22.81 E-value=85 Score=19.42 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhchhhcCCCCCHHhHHHHHHHHH
Q 015765 161 NYEEVKRIFTEFPKVYGIEPNSETYNKVIKSFC 193 (401)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 193 (401)
..++|.+.|.+|.++.++.|+. +|...+..++
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~ 44 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNA-SWEQAMKMII 44 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 3456666666666665554432 4544444444
No 385
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.61 E-value=2.4e+02 Score=21.04 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=23.8
Q ss_pred HHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 015765 94 ISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLR 143 (401)
Q Consensus 94 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 143 (401)
+..+++.+... +...|..+....+....+.|.+ ....+-.++...|+.
T Consensus 52 ie~vl~~L~~~-g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 52 ISEIINKLIDL-DLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 44445555433 3344455555566555544322 224455566677754
No 386
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.37 E-value=2.4e+02 Score=20.95 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=7.0
Q ss_pred HhHHHHHHHHHHhCCC
Q 015765 75 RMAFSIAVSKLSQANH 90 (401)
Q Consensus 75 ~~~~~~l~~~~~~~~~ 90 (401)
...-...+.++.+.+.
T Consensus 28 ~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 28 YYVRRAAAYALGKIGD 43 (201)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3344444444444444
No 387
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.71 E-value=7e+02 Score=25.97 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 015765 303 LEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLASISKVAEANELIGL 382 (401)
Q Consensus 303 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (401)
.+...+.|.++.+---.-|.......+..-...+++-.|.+++.++.+.. |....|..++..+...|-- ....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w~-h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGHE-HIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCH-HHHHHHHh
Confidence 44556677777654211233333333344447899999999999999874 7888998888888766644 34445554
Q ss_pred HH-hcCCCC
Q 015765 383 MK-KRFPKS 390 (401)
Q Consensus 383 ~~-~~~~~~ 390 (401)
+. -++|+.
T Consensus 1342 ~~~~~~p~~ 1350 (1354)
T 3lxu_X 1342 MMITAFPSS 1350 (1354)
T ss_dssp HHHHHSCSS
T ss_pred hhhhhCccc
Confidence 43 336665
No 388
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=21.64 E-value=4e+02 Score=23.16 Aligned_cols=144 Identities=9% Similarity=0.064 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHhchhhc---CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHhHH
Q 015765 148 ALNALLLGCILSKN---YEEVKRIFTEFPKVY---GIEPNSETYNKVIKSFCESGDSSSVYSILAEMRRKSIRPNATDFG 221 (401)
Q Consensus 148 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 221 (401)
....++...|..|+ .+.|.+.|+...+.. .++||.... +... + .+..+.-..+++..... .+..--.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--Vy~~-~-~~~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--VFAV-G-AQSTEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--HHHH-H-TTSHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--EEee-e-eCCHHHHHHHHHHHhcC---CCHHHHH
Confidence 34455666667776 457777887765432 255554321 1111 1 12233334444554443 2455566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCchhHHHHHHHHHhcC-CHHHHHHHHH----HHHHCCCCcCHHHHHHHHHH
Q 015765 222 LLLAGFYKEHKYEDVGKVLQMMEKCGIASGVNVYNIRIQSLCKLK-RSEEAKALLD----GMLSRGIKPNLDTYKHLIHG 296 (401)
Q Consensus 222 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~----~~~~~~~~p~~~~~~~li~~ 296 (401)
.++.+++...+.....++++......+....... .++.+.+... -.+.|.+.+. .+.+. ..++...+..++..
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~-~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~ 349 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFP-QILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMG 349 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHH-HHHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHH
Confidence 7888888888888888888887765432222323 3344444332 2344444443 33332 12233566777766
Q ss_pred HhcC
Q 015765 297 FGKE 300 (401)
Q Consensus 297 ~~~~ 300 (401)
....
T Consensus 350 ~~~~ 353 (419)
T 3rjo_A 350 TTNQ 353 (419)
T ss_dssp TTTT
T ss_pred Hhhc
Confidence 5544
No 389
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.30 E-value=86 Score=24.75 Aligned_cols=94 Identities=10% Similarity=-0.043 Sum_probs=51.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCc-------hhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCC--------
Q 015765 223 LLAGFYKEHKYEDVGKVLQMMEKCGIASGV-------NVYNIRIQSLCKL---KRSEEAKALLDGMLSRGIK-------- 284 (401)
Q Consensus 223 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~-------- 284 (401)
.+...+..|+.+.+..+++.+.+.|..++. .-.+.+. ..+.. |+.+-+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 344556778888888888888777765443 2233343 33444 7777777776655544311
Q ss_pred --cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhCCCCCCH
Q 015765 285 --PNLDTYKHLIHGFGKEGNLEGAKKLFASMTNGGCEPDS 322 (401)
Q Consensus 285 --p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 322 (401)
.|...++.|..++ ..|+.+- .+.+.+.|..++.
T Consensus 84 ~~~d~~g~t~L~~A~-~~g~~~~----v~~Ll~~ga~~~~ 118 (256)
T 2etb_A 84 TDEFYQGHSALHIAI-EKRSLQC----VKLLVENGADVHL 118 (256)
T ss_dssp CSTTTTTCCHHHHHH-HTTCHHH----HHHHHHTTCCTTC
T ss_pred ccccccCCCHHHHHH-HcCCHHH----HHHHHHcCCCCCc
Confidence 1122344444443 4555543 3444455655543
No 390
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=21.27 E-value=1.9e+02 Score=23.35 Aligned_cols=20 Identities=0% Similarity=-0.235 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 015765 116 HSIVLYGQANMIDHAMQTFE 135 (401)
Q Consensus 116 ~li~~~~~~~~~~~a~~~~~ 135 (401)
+.+...+..|+.++..++..
T Consensus 17 ~~lH~Aa~~g~~~~~~~~~~ 36 (285)
T 3d9h_A 17 RGSHMASMDGKQGGMDGSKP 36 (285)
T ss_dssp --------------------
T ss_pred HHHHHHhhcCCCCCcccCCC
Confidence 33444445555555544433
No 391
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.19 E-value=4e+02 Score=22.99 Aligned_cols=88 Identities=5% Similarity=-0.119 Sum_probs=0.0
Q ss_pred HHHHHhcCCChHHHHHHHHHH----------------HhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHC-----
Q 015765 293 LIHGFGKEGNLEGAKKLFASM----------------TNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAK----- 351 (401)
Q Consensus 293 li~~~~~~~~~~~a~~~~~~m----------------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 351 (401)
++..+....+.+++.+.+..+ .......-......+...|...|+.++|..++++....
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Q ss_pred CCCC--CHHHHHHHHHHHHccCCHHHHHHHH
Q 015765 352 GWVP--HFSTMKSLVTGLASISKVAEANELI 380 (401)
Q Consensus 352 ~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 380 (401)
++.| ....|......|...+++..+....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~ 192 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTS 192 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 392
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.64 E-value=1.3e+02 Score=20.93 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHhcCCChHHHHH
Q 015765 255 YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNLDTYKHLIHGFGKEGNLEGAKK 308 (401)
Q Consensus 255 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 308 (401)
|.-.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3334455555566666666666665554 45555555555555555555444
No 393
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.60 E-value=3e+02 Score=21.24 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=18.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 015765 300 EGNLEGAKKLFASMTNGGCEPDSYCFFMFTYFLCQGG 336 (401)
Q Consensus 300 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (401)
-.+++.|+-++.+|++.| .|....-..++.+...-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 446666666666666665 444333334444444433
No 394
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=20.21 E-value=1.9e+02 Score=25.03 Aligned_cols=268 Identities=16% Similarity=0.130 Sum_probs=125.2
Q ss_pred HHHHHHhCCCchHHHHHHHHhhhCCCCCCchhHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 015765 81 AVSKLSQANHFNAISQLLEELKTRPDLRQNERFHVHSIVLYGQANMIDHAMQTFEEMDKYGLRQSVDALNALLLGCILSK 160 (401)
Q Consensus 81 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (401)
.+...+..|+.+-+..+++.-. .+.... . ...+.+...+..|+.+-+..+++.-...+. .+..- ...+...+..|
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~~-~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g-~t~L~~A~~~g 91 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGA-SPNVSN-V-KVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDD-QTPLHCAARIG 91 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC-CSCCSS-S-CCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTS-CCHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHcCC-CCCCCC-C-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCC-CCHHHHHHHCC
Confidence 4566678888887777776522 222211 1 122345555677887776666654322111 11111 12344455678
Q ss_pred CHHHHHHHHHhchhhcCCCCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHccCChHH
Q 015765 161 NYEEVKRIFTEFPKVYGIEPNSE--TYNKVIKSFCESGDSSSVYSILAEMRRKSIRP---NATDFGLLLAGFYKEHKYED 235 (401)
Q Consensus 161 ~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~ 235 (401)
+.+-+.-+++. |..++.. .-.+.+...++.|+.+.+..+++ .+..+ +...++ .+...+..|+.+-
T Consensus 92 ~~~~v~~Ll~~-----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~~A~~~g~~~~ 161 (437)
T 1n11_A 92 HTNMVKLLLEN-----NANPNLATTAGHTPLHIAAREGHVETVLALLE----KEASQACMTKKGFT-PLHVAAKYGKVRV 161 (437)
T ss_dssp CHHHHHHHHHH-----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHHH
T ss_pred CHHHHHHHHhC-----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHHHHHHcCCHHH
Confidence 87766655544 2233321 11223444556677766555554 33222 222222 3344456677654
Q ss_pred HHHHHHHHHHcCCCCCchh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHhcCCChHHHHHHH
Q 015765 236 VGKVLQMMEKCGIASGVNV--YNIRIQSLCKLKRSEEAKALLDGMLSRGIKPNL---DTYKHLIHGFGKEGNLEGAKKLF 310 (401)
Q Consensus 236 a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~ 310 (401)
+ +.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++. ..++.+.. .+..|+.+-+
T Consensus 162 v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~~---- 228 (437)
T 1n11_A 162 A----ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYTPLHI-AAKQNQVEVA---- 228 (437)
T ss_dssp H----HHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCCHHHH-HHHTTCHHHH----
T ss_pred H----HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCCHHHH-HHHcCCHHHH----
Confidence 4 44445554443211 1123444556677654 4444455544332 22333333 3456665544
Q ss_pred HHHHhCCCCCCHh---hHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHH
Q 015765 311 ASMTNGGCEPDSY---CFFMFTYFLCQGGEYETALKVCRASMAKGWVPHF---STMKSLVTGLASISKVAEANELIGL 382 (401)
Q Consensus 311 ~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~ 382 (401)
+.+.+.|..++.. -.+. +...+..|..+-+..+ .+.|..++. .-.+. +...+..|+.+-+..+++.
T Consensus 229 ~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 229 RSLLQYGGSANAESVQGVTP-LHLAAQEGHAEMVALL----LSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp HHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhC
Confidence 4444555444322 2222 3334556776544443 444433322 11222 3334466777665555554
No 395
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.15 E-value=2e+02 Score=24.09 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 015765 308 KLFASMTNGGCEPDSYCFFMFTYFLCQGGEYETALKVCRASMAKGWVPHFSTMKSLVTGLAS----ISKVAEANELIGL 382 (401)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 382 (401)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++|+.+...|...-..+..+++..+.. ..++++..++++.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
No 396
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.09 E-value=3e+02 Score=21.16 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHHHHHhchhhcCCCCCHH-hHH-----HHHHHHHhcCChhHHHHHHHHHHh
Q 015765 162 YEEVKRIFTEFPKVYGIEPNSE-TYN-----KVIKSFCESGDSSSVYSILAEMRR 210 (401)
Q Consensus 162 ~~~a~~~~~~~~~~~~~~~~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~~~~ 210 (401)
.+.|+.+|+.+.+.. ++.. .-. ..+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~---~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEH---DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 577888888875432 2111 111 233457777888888888877543
Done!