Query 015769
Match_columns 400
No_of_seqs 226 out of 549
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:24:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 1.9E-37 4E-42 287.1 21.9 176 59-239 1-198 (198)
2 PF04755 PAP_fibrillin: PAP_fi 100.0 3.8E-31 8.2E-36 244.9 16.5 150 243-392 2-198 (198)
3 PF14869 DUF4488: Domain of un 69.0 59 0.0013 28.9 9.7 67 280-349 3-71 (133)
4 PF14869 DUF4488: Domain of un 58.7 90 0.002 27.8 9.0 68 108-185 2-71 (133)
5 COG3040 Blc Bacterial lipocali 45.0 67 0.0015 29.8 6.2 33 367-399 111-146 (174)
6 cd06407 PB1_NLP A PB1 domain i 43.0 48 0.001 26.8 4.5 13 211-223 38-50 (82)
7 COG3040 Blc Bacterial lipocali 41.1 1.1E+02 0.0024 28.4 7.0 38 212-251 111-151 (174)
8 cd06398 PB1_Joka2 The PB1 doma 38.0 52 0.0011 27.2 4.1 14 210-223 42-55 (91)
9 PF08212 Lipocalin_2: Lipocali 34.8 3E+02 0.0066 23.8 11.8 39 210-248 81-120 (143)
10 PF08212 Lipocalin_2: Lipocali 30.8 2.9E+02 0.0064 23.9 8.0 34 365-398 81-117 (143)
11 PF14216 DUF4326: Domain of un 30.7 27 0.00058 28.6 1.2 45 223-268 14-67 (86)
12 PF12101 DUF3577: Protein of u 27.7 1.5E+02 0.0032 26.6 5.4 72 217-291 18-97 (137)
13 PF05973 Gp49: Phage derived p 24.3 2.2E+02 0.0048 22.6 5.6 42 80-121 7-50 (91)
14 TIGR03422 mito_frataxin fratax 24.2 82 0.0018 26.3 3.1 20 233-252 45-64 (97)
15 PF07070 Spo0M: SpoOM protein; 23.3 6.7E+02 0.014 24.0 10.0 98 149-253 27-145 (218)
16 PF13596 PAS_10: PAS domain; P 23.2 68 0.0015 25.8 2.4 70 215-287 11-83 (106)
17 TIGR02334 prpF probable AcnD-a 22.8 2.3E+02 0.0051 29.6 6.6 94 158-266 146-248 (390)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=1.9e-37 Score=287.11 Aligned_cols=176 Identities=40% Similarity=0.681 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHhcCCCCCCCCC-CCcceEEEEEEecCCCCCCccccc-ccCcee
Q 015769 59 TGEENQLIDALIGIQGRGRSASARQLNDVECAVKVLEGLQGVPDPTGS-SLIEGRWQLMFTTRPGTASPIQRT-FVGVET 136 (400)
Q Consensus 59 ~~~K~~LL~al~~t~~rG~~as~~~r~~I~~lI~~LEalnpt~~P~~s-~lL~G~W~LvyTt~~~t~sp~~r~-~~Gv~~ 136 (400)
.++|++||++++++ +||..++++++++|+++|++||++||+++|+++ ++|+|+|+|+|||++++.+.+++. .+++..
T Consensus 1 ~~~K~~Ll~~~~~~-~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~ 79 (198)
T PF04755_consen 1 QDLKQELLQAVAGT-NRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRV 79 (198)
T ss_pred ChHHHHHHHHHhcc-CCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccc
Confidence 36899999999999 899999999999999999999999999999998 999999999999999988776653 456777
Q ss_pred eeeeEEEEEeCCCCcEEEEEEEec---cceeEEEEEEEEEecCCEEEEEEEeeeeeeccc-----------------ccc
Q 015769 137 FSVFQEISLRTNDPRVSNIVKFSE---AIGELKVEAAASIKDGKRILFQFDKAAFSFKFL-----------------PFK 196 (400)
Q Consensus 137 ~~v~Q~i~ld~~~~~v~N~V~f~~---~~g~l~V~a~~~~~~~~rv~v~F~~~~l~~~~~-----------------~f~ 196 (400)
+++||.|+ .+++++.|+|+|.. ..|.+.+.+.+++.++.|+.++|+++.+.++.. ...
T Consensus 80 ~~v~Q~id--~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~ 157 (198)
T PF04755_consen 80 GRVFQTID--ADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGIS 157 (198)
T ss_pred cceEEEEE--CCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccc
Confidence 89999984 56799999999765 357899999999999999999999998865211 112
Q ss_pred cCCCccccccCCCcceEEEEEEecCCCceEEEeCCCCcEEEEe
Q 015769 197 FPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQ 239 (400)
Q Consensus 197 ~p~P~~f~l~g~~~~Gwld~tYLD~~~dlRIsRG~kG~~FVl~ 239 (400)
..+|+++++.+..++|||||||||+ ||||+||++|++|||.
T Consensus 158 ~~~~~~~~~~~~~~~g~l~~tYLDe--dlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 158 DELPVPLPLPGGSPKGWLDTTYLDE--DLRISRGNKGSLFVLK 198 (198)
T ss_pred cccccccccCCCCCceEEEEEEECC--CeEEEEcCCCCEEEeC
Confidence 2355666666678999999999999 9999999999999984
No 2
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=99.97 E-value=3.8e-31 Score=244.92 Aligned_cols=150 Identities=24% Similarity=0.348 Sum_probs=122.2
Q ss_pred CcccchhhhccCc-----------hHHHHHHHHHHHcCCCCCcccc-cccceeEEEEEecccCchhhhhhh-cCCCC---
Q 015769 243 EPRQTLLSAISTG-----------TQVEQAINEFISSNQSTAEEER-ELLEGEWQMLWSSQMETDSWIENA-GNGLM--- 306 (400)
Q Consensus 243 ~~~q~ll~ai~~~-----------~~i~~~i~~Le~~np~~~p~~~-~lL~G~W~L~yts~~e~~~~l~~~-~~gl~--- 306 (400)
+.+++||++++.. .+|.++|++||++||++.|.++ ++|+|+|+|+|||+.+..+.+..- ..+..
T Consensus 2 ~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~~~~~~~~ 81 (198)
T PF04755_consen 2 DLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRLPGVRVGR 81 (198)
T ss_pred hHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCccccccccccccccccc
Confidence 3467888888742 4799999999999999999765 999999999999999887665431 11221
Q ss_pred CeeEEc-cCCceEEEEEecc--C--eEEEEEEEEEEeCCcEEEEEEeecEEEe-------------------------cc
Q 015769 307 GKQIVK-KNGQMKFEVDILL--G--FKFSMTGTYAKSSTNTYNVTMDDAAIIC-------------------------GG 356 (400)
Q Consensus 307 ~~Q~Id-~~~~~~N~v~~~~--~--~~~~~~a~~~~~s~~rv~V~F~~~~i~~-------------------------~~ 356 (400)
.||+|| +++++.|+|++.+ . +.+.+.|++++.+++|+.|+|+++.+.. .+
T Consensus 82 v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~~~~ 161 (198)
T PF04755_consen 82 VFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISDELP 161 (198)
T ss_pred eEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhcccccccccc
Confidence 399999 8999999999743 2 5688999999999999999999998843 12
Q ss_pred cccccC-CCceeEEEEEEeeCceeEEeCCCCeEEEEE
Q 015769 357 FGYPIK-METKINLQLLYSDDKMRISRGYNNILFVHL 392 (400)
Q Consensus 357 ~~~p~~-~~~~gwlditYLD~~lRI~RG~~G~~FVl~ 392 (400)
+.++++ ..++||||||||||+|||+||++|++|||.
T Consensus 162 ~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~ 198 (198)
T PF04755_consen 162 VPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK 198 (198)
T ss_pred cccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence 223333 357899999999999999999999999984
No 3
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=68.96 E-value=59 Score=28.91 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=43.5
Q ss_pred cceeEEEE-EecccCchhhhhhhcCCCCCeeEEccCCceEEEEEec-cCeEEEEEEEEEEeCCcEEEEEEee
Q 015769 280 LEGEWQML-WSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDIL-LGFKFSMTGTYAKSSTNTYNVTMDD 349 (400)
Q Consensus 280 L~G~W~L~-yts~~e~~~~l~~~~~gl~~~Q~Id~~~~~~N~v~~~-~~~~~~~~a~~~~~s~~rv~V~F~~ 349 (400)
|.|.|+|. |-++....+.-.++ ...+-+|-+++++.|+.-+. .+......++|+..++..+.=..++
T Consensus 3 l~GVWQ~c~~~~~~~~~~g~l~~---~~~lKilS~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 3 LQGVWQLCHYVSESPEVPGKLKP---SNVLKILSDDGTFVNITMIPKSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred ceEEEEEEEEeecCcccCceEee---cccEEEEcCCCcEEEEEEeCCCCcEEEEeEEEEEcCCccceeeecc
Confidence 78999998 66655432211111 11277888999999997754 3345677999999888754444443
No 4
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=58.73 E-value=90 Score=27.76 Aligned_cols=68 Identities=15% Similarity=0.287 Sum_probs=43.4
Q ss_pred CcceEEEEE-EecC-CCCCCcccccccCceeeeeeEEEEEeCCCCcEEEEEEEeccceeEEEEEEEEEecCCEEEEEEEe
Q 015769 108 LIEGRWQLM-FTTR-PGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFDK 185 (400)
Q Consensus 108 lL~G~W~Lv-yTt~-~~t~sp~~r~~~Gv~~~~v~Q~i~ld~~~~~v~N~V~f~~~~g~l~V~a~~~~~~~~rv~v~F~~ 185 (400)
-|.|-|+|. |-+. ++... + +...+++..+ +++|++.|.+-.......+...++|+..++....-..++
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g---~----l~~~~~lKil---S~Dgtf~Ni~~~~~~~aiIt~~GtY~~~sD~~Y~E~IeK 71 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPG---K----LKPSNVLKIL---SDDGTFVNITMIPKSGAIITGYGTYEQPSDNIYVESIEK 71 (133)
T ss_pred CceEEEEEEEEeecCcccCc---e----EeecccEEEE---cCCCcEEEEEEeCCCCcEEEEeEEEEEcCCccceeeecc
Confidence 378999999 4443 22111 1 1112344444 468999999886544345666788999888877777776
No 5
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=45.04 E-value=67 Score=29.76 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=28.8
Q ss_pred eEEEEEEeeCcee---EEeCCCCeEEEEEecCCCCC
Q 015769 367 INLQLLYSDDKMR---ISRGYNNILFVHLRTDGSNQ 399 (400)
Q Consensus 367 gwlditYLD~~lR---I~RG~~G~~FVl~R~~~~~~ 399 (400)
|=-.++|+|++-+ ++=.|+-.+|+|.|.+++.|
T Consensus 111 g~Y~Vl~~d~eYs~aiVgsPdr~ylWlLsRtP~~s~ 146 (174)
T COG3040 111 GDYWVLALDPEYSWAIVGSPDREYLWLLSRTPTLSQ 146 (174)
T ss_pred ccEEEEEECCCccEEEEeCCCcceEEEEecCCCCCH
Confidence 6778999999988 67889999999999997665
No 6
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=42.97 E-value=48 Score=26.79 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.5
Q ss_pred ceEEEEEEecCCC
Q 015769 211 KGWLDTTYLSPSG 223 (400)
Q Consensus 211 ~Gwld~tYLD~~~ 223 (400)
.+-|.+.|+|++|
T Consensus 38 ~~~f~LkY~Ddeg 50 (82)
T cd06407 38 MSAFDLKYLDDDE 50 (82)
T ss_pred CCeeEEEEECCCC
Confidence 3788999999943
No 7
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=41.14 E-value=1.1e+02 Score=28.37 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=27.2
Q ss_pred eEEEEEEecCCCceEE---EeCCCCcEEEEeecCCcccchhhh
Q 015769 212 GWLDTTYLSPSGNLRI---SRGNKGTTFVLQKKTEPRQTLLSA 251 (400)
Q Consensus 212 Gwld~tYLD~~~dlRI---sRG~kG~~FVl~R~~~~~q~ll~a 251 (400)
|-..++|+|+ |=+. +-.|+-.+|++.|.-.+.++.++.
T Consensus 111 g~Y~Vl~~d~--eYs~aiVgsPdr~ylWlLsRtP~~s~~~~~~ 151 (174)
T COG3040 111 GDYWVLALDP--EYSWAIVGSPDREYLWLLSRTPTLSQETLKR 151 (174)
T ss_pred ccEEEEEECC--CccEEEEeCCCcceEEEEecCCCCCHHHHHH
Confidence 5557999999 5543 345677899999988776655543
No 8
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=37.98 E-value=52 Score=27.15 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=10.5
Q ss_pred cceEEEEEEecCCC
Q 015769 210 AKGWLDTTYLSPSG 223 (400)
Q Consensus 210 ~~Gwld~tYLD~~~ 223 (400)
+..-+.+.|.|++|
T Consensus 42 ~~~~~~l~Y~Dedg 55 (91)
T cd06398 42 PDADLSLTYTDEDG 55 (91)
T ss_pred CCCcEEEEEECCCC
Confidence 34677889999953
No 9
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=34.78 E-value=3e+02 Score=23.81 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=26.6
Q ss_pred cceEEEEEEecCCC-ceEEEeCCCCcEEEEeecCCcccch
Q 015769 210 AKGWLDTTYLSPSG-NLRISRGNKGTTFVLQKKTEPRQTL 248 (400)
Q Consensus 210 ~~Gwld~tYLD~~~-dlRIsRG~kG~~FVl~R~~~~~q~l 248 (400)
..|-..|.|+|.+- -.=++-.++-.+|||.|...+.+..
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~~~~ 120 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLSEET 120 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--HHH
T ss_pred CCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCCHHH
Confidence 35666799999831 1556667788899999987765543
No 10
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=30.80 E-value=2.9e+02 Score=23.91 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=26.3
Q ss_pred ceeEEEEEEeeCc---eeEEeCCCCeEEEEEecCCCC
Q 015769 365 TKINLQLLYSDDK---MRISRGYNNILFVHLRTDGSN 398 (400)
Q Consensus 365 ~~gwlditYLD~~---lRI~RG~~G~~FVl~R~~~~~ 398 (400)
..+--.|+|+|.+ .=+|-.++-.+|||.|.+.+.
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~~~~~~WILsR~p~~~ 117 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSPDREYLWILSRTPQLS 117 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEECCCCEEEEEESSSS--
T ss_pred CCcceEEEEEcCCccEEEEecCCCCEEEEEeCCCCCC
Confidence 4567788999988 347888899999999998753
No 11
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=30.72 E-value=27 Score=28.58 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=29.9
Q ss_pred CceEEEeCCC-CcEEEEeecCCcccchhhhc--------cCchHHHHHHHHHHHc
Q 015769 223 GNLRISRGNK-GTTFVLQKKTEPRQTLLSAI--------STGTQVEQAINEFISS 268 (400)
Q Consensus 223 ~dlRIsRG~k-G~~FVl~R~~~~~q~ll~ai--------~~~~~i~~~i~~Le~~ 268 (400)
|++.|+|+.+ ||.|+..... .+++.++++ ..+..+.+.+.+|...
T Consensus 14 ~~vyIgR~s~wGNPf~~~~~~-~R~~~v~~yr~~l~~~~~~~~~~~~~l~~L~Gk 67 (86)
T PF14216_consen 14 GAVYIGRPSKWGNPFRVGEDG-DREEAVEKYREWLWGRLRTREILRDALEELRGK 67 (86)
T ss_pred CCEEeCCCCcCCCCCcCCCCC-CHHHHHHHHHHHHHHhccccHHHHHHHHhcCCC
Confidence 4899999987 9999997733 333333332 4556677777777543
No 12
>PF12101 DUF3577: Protein of unknown function (DUF3577); InterPro: IPR021960 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 143 to 307 amino acids in length.
Probab=27.68 E-value=1.5e+02 Score=26.56 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=52.3
Q ss_pred EEecCCCceEEEeCCCCcEEEEeec-------CCcccchhhhccCchHHHHHHHHHHHc-CCCCCcccccccceeEEEEE
Q 015769 217 TYLSPSGNLRISRGNKGTTFVLQKK-------TEPRQTLLSAISTGTQVEQAINEFISS-NQSTAEEERELLEGEWQMLW 288 (400)
Q Consensus 217 tYLD~~~dlRIsRG~kG~~FVl~R~-------~~~~q~ll~ai~~~~~i~~~i~~Le~~-np~~~p~~~~lL~G~W~L~y 288 (400)
=||.. +|.-.+.+|.-|.-... ++|..+-+|++-.|.+..++|..+... +......-.--|..-|-=.|
T Consensus 18 GYLnr---iR~V~~~kg~pFlac~I~AL~G~~d~~ey~~fD~~V~G~eA~~Lv~r~~~av~~~~KVli~FrlgDl~~d~f 94 (137)
T PF12101_consen 18 GYLNR---IREVTPRKGDPFLACTIAALRGPADNPEYRYFDCRVVGEEAKELVRRCQKAVDEDKKVLIGFRLGDLWADTF 94 (137)
T ss_pred EEecc---ceEccCCCCCeeEEEEeeeeecCCCCccEEEEEEEEecHHHHHHHHHHHhhcccCCcEEEEEEecCCceeeE
Confidence 37766 99999999998875543 556799999999999999999998655 43333333444566666666
Q ss_pred ecc
Q 015769 289 SSQ 291 (400)
Q Consensus 289 ts~ 291 (400)
+-.
T Consensus 95 ~~~ 97 (137)
T PF12101_consen 95 TYK 97 (137)
T ss_pred Eec
Confidence 653
No 13
>PF05973 Gp49: Phage derived protein Gp49-like (DUF891); InterPro: IPR009241 This entry consists of several hypothetical viral and bacterial proteins some are annotated as addiction module killer proteins.
Probab=24.34 E-value=2.2e+02 Score=22.64 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=30.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCCCCCCC-CCc-ceEEEEEEecCC
Q 015769 80 SARQLNDVECAVKVLEGLQGVPDPTGS-SLI-EGRWQLMFTTRP 121 (400)
Q Consensus 80 s~~~r~~I~~lI~~LEalnpt~~P~~s-~lL-~G~W~LvyTt~~ 121 (400)
++..+.+|...++.|+..+|...+... .+= +|-|+|......
T Consensus 7 ~~~~~~~i~~~l~~l~~~G~~l~~~~~k~l~~~~i~ElR~~~~~ 50 (91)
T PF05973_consen 7 PDKERAKILAQLERLEEHGPSLGEPLFKHLKGDGIYELRVRGGS 50 (91)
T ss_pred CHHHHHHHHHHHHHHHhcCCccCCCcccccCcCCeEEEEEeecC
Confidence 466789999999999888754433333 333 699999998765
No 14
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=24.19 E-value=82 Score=26.33 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.3
Q ss_pred CcEEEEeecCCcccchhhhc
Q 015769 233 GTTFVLQKKTEPRQTLLSAI 252 (400)
Q Consensus 233 G~~FVl~R~~~~~q~ll~ai 252 (400)
|+.||+-|....+|.+|.+.
T Consensus 45 ~~~~VINkQ~p~~QIWlsSp 64 (97)
T TIGR03422 45 VGTYVINKQPPNKQIWLSSP 64 (97)
T ss_pred CCEEEEeCCChhhHHheecC
Confidence 78999999999999999984
No 15
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=23.30 E-value=6.7e+02 Score=24.04 Aligned_cols=98 Identities=20% Similarity=0.301 Sum_probs=45.3
Q ss_pred CCcEEEEEEEeccc-------eeEEEEEEEEEecC-C--EEEEEEEeeeeeecc---------cccccCCC--ccccccC
Q 015769 149 DPRVSNIVKFSEAI-------GELKVEAAASIKDG-K--RILFQFDKAAFSFKF---------LPFKFPYP--VPFRLLG 207 (400)
Q Consensus 149 ~~~v~N~V~f~~~~-------g~l~V~a~~~~~~~-~--rv~v~F~~~~l~~~~---------~~f~~p~P--~~f~l~g 207 (400)
++.+.-.|.+.++. -.+.+.+.++..++ + +....|.+..+..++ .||.+++| .|+..
T Consensus 27 Ge~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~~iPF~~~lP~etPiT~-- 104 (218)
T PF07070_consen 27 GETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEKEIPFSFPLPWETPITE-- 104 (218)
T ss_pred CCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEEEEeEEEECCCCCCccC--
Confidence 34455555555431 13555566666543 2 456666666554321 35655444 33322
Q ss_pred CCcceEEEEEEecCCCceEEEeCCCCcEEEEeecCCcccchhhhcc
Q 015769 208 DEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAIS 253 (400)
Q Consensus 208 ~~~~Gwld~tYLD~~~dlRIsRG~kG~~FVl~R~~~~~q~ll~ai~ 253 (400)
+...-|+. |-||= +.=|-.+|.- .|.++.....+..|+|++
T Consensus 105 ~~~~v~l~-T~LdI--~~avD~~D~D--~i~V~P~p~~~~vl~A~~ 145 (218)
T PF07070_consen 105 GGMRVWLR-TGLDI--AGAVDPGDLD--PIEVEPLPAQQAVLDALE 145 (218)
T ss_pred CCcEEEEE-EEEEe--CCCCCCCCce--eEEEeCCHHHHHHHHHHH
Confidence 34556774 44444 2222222222 444444444455544443
No 16
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=23.25 E-value=68 Score=25.81 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=38.5
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEeecCCcccchhhhccCc---hHHHHHHHHHHHcCCCCCcccccccceeEEEE
Q 015769 215 DTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG---TQVEQAINEFISSNQSTAEEERELLEGEWQML 287 (400)
Q Consensus 215 d~tYLD~~~dlRIsRG~kG~~FVl~R~~~~~q~ll~ai~~~---~~i~~~i~~Le~~np~~~p~~~~lL~G~W~L~ 287 (400)
.++|+|. ++||.|=|+..--+|.+...--.+-+..|-.. ..+.+.++++..-+........+ -+|.|-++
T Consensus 11 ~i~~vD~--~~~I~~~n~~a~~~f~~~~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~-~~~~~~~~ 83 (106)
T PF13596_consen 11 GIIFVDR--NLRIRYFNPAAARLFNLSPSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKEEEFEIVIP-NGGRWYLV 83 (106)
T ss_dssp EEEEEET--TSBEEEE-SCGC-SS---GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSBSEEEEEEE-ETTEEEEE
T ss_pred CEEEEcC--CCeEEEeChhHhhhcCCChHHCCCCHHHcCCccchHHHHHHHHHHHcCCCceEEEEec-CCCEEEEE
Confidence 6899999 99999988875545544444445555555433 35667777776655433221222 45655443
No 17
>TIGR02334 prpF probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126.
Probab=22.76 E-value=2.3e+02 Score=29.61 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=53.8
Q ss_pred EeccceeEEEEEEEEEec----CCEEEEEEEeee--eeecccccccCCCccccccCCCcceEEEEEEecCCCceEEEeCC
Q 015769 158 FSEAIGELKVEAAASIKD----GKRILFQFDKAA--FSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGN 231 (400)
Q Consensus 158 f~~~~g~l~V~a~~~~~~----~~rv~v~F~~~~--l~~~~~~f~~p~P~~f~l~g~~~~Gwld~tYLD~~~dlRIsRG~ 231 (400)
|..+.|.+..++.+.+.+ +..|.+.|-+.. ...+++|-.-+... +.+ ...|-++.|-+|-
T Consensus 146 v~~~~G~~~~~Gd~~IdGVpGt~apI~L~F~dpaGs~TG~LlPTGn~~D~-i~~---~g~~~i~vS~IDa---------- 211 (390)
T TIGR02334 146 VPISGGQVQETGDFELDGVTFPAAEVQLEFLDPADDGEGAMFPTGNLVDD-LEV---PGVGTFKATLINA---------- 211 (390)
T ss_pred EecCCCeecccCCeeeCCCCCCCCceEEEeeccccCCCCCCCCCCCceEE-EEC---CCCceEEEEEEEC----------
Confidence 333446777777777653 567888886533 22233332211100 000 1113345555555
Q ss_pred CCcEEEEeecCCc---ccchhhhccCchHHHHHHHHHH
Q 015769 232 KGTTFVLQKKTEP---RQTLLSAISTGTQVEQAINEFI 266 (400)
Q Consensus 232 kG~~FVl~R~~~~---~q~ll~ai~~~~~i~~~i~~Le 266 (400)
|+.+||.|..+- -.++.+.+....+..+.++++.
T Consensus 212 -anP~Vfv~A~dlGl~G~E~p~~l~~~~~ll~~lE~IR 248 (390)
T TIGR02334 212 -GIPTVFVNAEDLGYTGTELQDAINGDPAALAMFETIR 248 (390)
T ss_pred -CCcEEEEEHHHcCCCCccCHHHHhchHHHHHHHHHHH
Confidence 999999997774 2677777777777777666654
Done!