Query 015769
Match_columns 400
No_of_seqs 226 out of 549
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 18:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gzv_A Hypothetical protein; A 84.6 8 0.00027 33.4 10.2 71 276-349 8-80 (142)
2 4i95_A Putative uncharacterize 76.8 20 0.00068 30.8 9.9 69 277-349 9-80 (142)
3 4i95_A Putative uncharacterize 75.5 24 0.00081 30.3 10.0 72 106-186 9-81 (142)
4 4gzv_A Hypothetical protein; A 69.9 26 0.00089 30.2 9.1 101 104-229 7-108 (142)
5 1z8m_A Conserved hypothetical 27.5 40 0.0014 25.2 2.9 17 256-272 25-41 (88)
6 1qwd_A Outer membrane lipoprot 27.1 2.1E+02 0.0072 24.5 7.9 36 212-249 114-152 (177)
7 2pw0_A PRPF methylaconitate is 20.2 2E+02 0.0069 28.7 7.1 69 224-292 212-288 (397)
8 2a6s_A Toxin YOEB; YEFM, antit 20.1 83 0.0028 23.1 3.3 16 256-272 25-40 (84)
9 1qwd_A Outer membrane lipoprot 17.2 4.7E+02 0.016 22.2 8.6 55 330-398 88-148 (177)
10 1qbj_A Protein (double-strande 15.6 2.2E+02 0.0075 21.6 4.9 56 59-119 9-73 (81)
No 1
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=84.59 E-value=8 Score=33.39 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=46.6
Q ss_pred cccccceeEEEE-EecccCchhhhhhhcCCCCCeeEEccCCceEEEEEeccC-eEEEEEEEEEEeCCcEEEEEEee
Q 015769 276 ERELLEGEWQML-WSSQMETDSWIENAGNGLMGKQIVKKNGQMKFEVDILLG-FKFSMTGTYAKSSTNTYNVTMDD 349 (400)
Q Consensus 276 ~~~lL~G~W~L~-yts~~e~~~~l~~~~~gl~~~Q~Id~~~~~~N~v~~~~~-~~~~~~a~~~~~s~~rv~V~F~~ 349 (400)
.+.-|.|.|+|. |.++......--+. ...+=||.+++++.|++-.... ......++|+..|+..+.=..++
T Consensus 8 ~~~~L~GvWQ~c~y~~~~~~~~~~l~~---s~~~KIlS~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~E~i~k 80 (142)
T 4gzv_A 8 KAADLKGIWQLCHYVSESPDVPGALKP---SNTFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKESIEK 80 (142)
T ss_dssp GSCCCCEEEEEEEEEESSTTSCCEEEE---EEEEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccccceEEeEEeeEeecCCCCCceEee---cCceEEECCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeeeeeecc
Confidence 456799999987 55554332211011 1137889899999999865433 33577999999998876544443
No 2
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=76.78 E-value=20 Score=30.80 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=45.0
Q ss_pred ccccceeEEEEEecccCchhhhh-hhcCCCCC-eeEEccCCceEEEEEeccC-eEEEEEEEEEEeCCcEEEEEEee
Q 015769 277 RELLEGEWQMLWSSQMETDSWIE-NAGNGLMG-KQIVKKNGQMKFEVDILLG-FKFSMTGTYAKSSTNTYNVTMDD 349 (400)
Q Consensus 277 ~~lL~G~W~L~yts~~e~~~~l~-~~~~gl~~-~Q~Id~~~~~~N~v~~~~~-~~~~~~a~~~~~s~~rv~V~F~~ 349 (400)
..-|.|.|+|..=.+.+.+-+.. +. .| +-||-+++++.|++-.... ....+.++|+..|+..+.=..++
T Consensus 9 ~~~L~GvWQ~C~y~s~~pd~~g~L~p----sn~lKIlSdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~E~IeK 80 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENPDIPGVLKP----SNTFKVLSDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYKESIEK 80 (142)
T ss_dssp CCSCCEEEEEEEEECSSTTSCCEEEE----EEEEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEEEE
T ss_pred cccceeEeEEEEEecCCCCCceEecc----CccEEEEcCCCcEEEEEEecCCCcEEEEeEEEEecCCcceeeeecc
Confidence 35699999996554443221111 11 12 7888899999999777423 44677999999988876544444
No 3
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=75.53 E-value=24 Score=30.32 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=49.7
Q ss_pred CCCcceEEEEEEecCCCCCCcccccccC-ceeeeeeEEEEEeCCCCcEEEEEEEeccceeEEEEEEEEEecCCEEEEEEE
Q 015769 106 SSLIEGRWQLMFTTRPGTASPIQRTFVG-VETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQFD 184 (400)
Q Consensus 106 s~lL~G~W~LvyTt~~~t~sp~~r~~~G-v~~~~v~Q~i~ld~~~~~v~N~V~f~~~~g~l~V~a~~~~~~~~rv~v~F~ 184 (400)
..-|.|-|+|.+-.+..-.- +| +.-.+.+..+ +++|++.|.+-...........++|+..++....-..+
T Consensus 9 ~~~L~GvWQ~C~y~s~~pd~------~g~L~psn~lKIl---SdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~E~Ie 79 (142)
T 4i95_A 9 PAHLQGIWQLCHYVSENPDI------PGVLKPSNTFKVL---SDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYKESIE 79 (142)
T ss_dssp CCSCCEEEEEEEEECSSTTS------CCEEEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEEE
T ss_pred cccceeEeEEEEEecCCCCC------ceEeccCccEEEE---cCCCcEEEEEEecCCCcEEEEeEEEEecCCcceeeeec
Confidence 35689999999877543222 22 2223455554 57899999998854434566788999999998888777
Q ss_pred ee
Q 015769 185 KA 186 (400)
Q Consensus 185 ~~ 186 (400)
+.
T Consensus 80 Kn 81 (142)
T 4i95_A 80 KN 81 (142)
T ss_dssp EE
T ss_pred cc
Confidence 75
No 4
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=69.91 E-value=26 Score=30.19 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=60.2
Q ss_pred CCCCCcceEEEEEEe-cCCCCCCcccccccCceeeeeeEEEEEeCCCCcEEEEEEEeccceeEEEEEEEEEecCCEEEEE
Q 015769 104 TGSSLIEGRWQLMFT-TRPGTASPIQRTFVGVETFSVFQEISLRTNDPRVSNIVKFSEAIGELKVEAAASIKDGKRILFQ 182 (400)
Q Consensus 104 ~~s~lL~G~W~LvyT-t~~~t~sp~~r~~~Gv~~~~v~Q~i~ld~~~~~v~N~V~f~~~~g~l~V~a~~~~~~~~rv~v~ 182 (400)
.+..-|.|-|++++- +..... +. + +.....|..+ .++|++.|.+-.......+...++|+..++....-.
T Consensus 7 ~~~~~L~GvWQ~c~y~~~~~~~-~~-~----l~~s~~~KIl---S~DgtF~N~~m~~~~~aiIt~yGtY~l~SD~~Y~E~ 77 (142)
T 4gzv_A 7 FKAADLKGIWQLCHYVSESPDV-PG-A----LKPSNTFKVL---SDDGRIVNFTIIPGADAIITGYGTYKQLTDDSYKES 77 (142)
T ss_dssp GGSCCCCEEEEEEEEEESSTTS-CC-E----EEEEEEEEEE---CTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEE
T ss_pred cccccceEEeEEeeEeecCCCC-Cc-e----EeecCceEEE---CCCCcEEEEEEeCCCCcEEEEeEEEEecCCCeeeee
Confidence 344679999998843 332111 10 1 2223455555 578999999965544334566789999999988777
Q ss_pred EEeeeeeecccccccCCCccccccCCCcceEEEEEEecCCCceEEEe
Q 015769 183 FDKAAFSFKFLPFKFPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISR 229 (400)
Q Consensus 183 F~~~~l~~~~~~f~~p~P~~f~l~g~~~~Gwld~tYLD~~~dlRIsR 229 (400)
.++... + |+- ....--|..-.+|+ +.|+|+-
T Consensus 78 i~kni~-~---p~~-----------~g~~n~L~fe~~~d-n~l~lsy 108 (142)
T 4gzv_A 78 IEKNIH-L---PML-----------DNQDNILEFEIKDN-DYLHLKY 108 (142)
T ss_dssp EEEESS-S---GGG-----------TTEEEEEEEEEETT-TEEEEEE
T ss_pred eccccc-C---ccc-----------cCCccEEEEEEccC-CEEEEEE
Confidence 776532 1 111 13445566666766 3566654
No 5
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=27.46 E-value=40 Score=25.17 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHcCCCC
Q 015769 256 TQVEQAINEFISSNQST 272 (400)
Q Consensus 256 ~~i~~~i~~Le~~np~~ 272 (400)
..+.+++++|.+.||-+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 46778888886557744
No 6
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=27.13 E-value=2.1e+02 Score=24.52 Aligned_cols=36 Identities=8% Similarity=0.158 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCc---eEEEeCCCCcEEEEeecCCcccchh
Q 015769 212 GWLDTTYLSPSGN---LRISRGNKGTTFVLQKKTEPRQTLL 249 (400)
Q Consensus 212 Gwld~tYLD~~~d---lRIsRG~kG~~FVl~R~~~~~q~ll 249 (400)
+-+-+.++|+ + +=++..++..++||.|...+.++.+
T Consensus 114 ~~y~Vl~tD~--~Ya~~~v~~~~~~~~wILsR~p~l~~~~~ 152 (177)
T 1qwd_A 114 GGYNVIALDR--EYRHALVCGPDRDYLWILSRTPTISDEVK 152 (177)
T ss_dssp EEEEEEEEBT--TSSEEEEECSSTTCEEEEESSSSCCHHHH
T ss_pred ceEEEEEECC--CeeEEEEecCCCcEEEEEECCCCCCHHHH
Confidence 3345889997 6 3345556778999999877655433
No 7
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconi binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A
Probab=20.23 E-value=2e+02 Score=28.67 Aligned_cols=69 Identities=7% Similarity=0.032 Sum_probs=38.8
Q ss_pred ceEEEeCCCCcEEEEeecCCcc---cchhhhccCchHHHHHHHHHH-----HcCCCCCcccccccceeEEEEEeccc
Q 015769 224 NLRISRGNKGTTFVLQKKTEPR---QTLLSAISTGTQVEQAINEFI-----SSNQSTAEEERELLEGEWQMLWSSQM 292 (400)
Q Consensus 224 dlRIsRG~kG~~FVl~R~~~~~---q~ll~ai~~~~~i~~~i~~Le-----~~np~~~p~~~~lL~G~W~L~yts~~ 292 (400)
.++++--+.|+.|||++..+-- .++-+.|....++.+.++++. ..+....|++.+...+.=.+.|.+..
T Consensus 212 ~v~vtlid~G~p~v~V~A~dlG~~g~E~p~~i~~d~~ll~~~e~IR~~aa~~mgl~~~~~~a~~~~~vPkv~~vs~p 288 (397)
T 2pw0_A 212 RFNATMINAGIPTIFINAEDLGYTGTELQDDINSDNAALAKFETIRAHGALRMGLIKHIDEAASRQHTPKIAFVAPP 288 (397)
T ss_dssp EEEEEEEEBSSEEEEEEGGGGTCCSCCCHHHHTTCHHHHHHHHHHHHHHHHHTTSCSSGGGGGGCCSSSEEEEEESC
T ss_pred CEEEEEEeCCceEEEEEHHHcCCCCccCHHHhccCHHHHHHHHHHHHHHHhhCCccCChhHccccCCCCEEEEEeCC
Confidence 3555555559999999977642 555666666665555555542 22333334333334445566666644
No 8
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=20.05 E-value=83 Score=23.08 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHcCCCC
Q 015769 256 TQVEQAINEFISSNQST 272 (400)
Q Consensus 256 ~~i~~~i~~Le~~np~~ 272 (400)
..|.++|++|.. ||-+
T Consensus 25 ~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 25 KKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHh-CCCC
Confidence 456677777744 6754
No 9
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=17.24 E-value=4.7e+02 Score=22.18 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=35.4
Q ss_pred EEEEEEEEe---CCcEEEEEEeecEEEecccccccCCCceeEEEEEEeeCcee---EEeCCCCeEEEEEecCCCC
Q 015769 330 SMTGTYAKS---STNTYNVTMDDAAIICGGFGYPIKMETKINLQLLYSDDKMR---ISRGYNNILFVHLRTDGSN 398 (400)
Q Consensus 330 ~~~a~~~~~---s~~rv~V~F~~~~i~~~~~~~p~~~~~~gwlditYLD~~lR---I~RG~~G~~FVl~R~~~~~ 398 (400)
.+.++..+. .+.+..|+|. +|+ .+=.-|+++|++-+ +|..++..++||.|.+.+.
T Consensus 88 ~~~g~a~~~~~~~~gkl~v~f~------~p~--------~~~y~Vl~tD~~Ya~~~v~~~~~~~~wILsR~p~l~ 148 (177)
T 1qwd_A 88 QSEGKAYFTGAPTRAALKVSFF------GPF--------YGGYNVIALDREYRHALVCGPDRDYLWILSRTPTIS 148 (177)
T ss_dssp EEEEEEEESSCTTSCEEEEEEE------TTE--------EEEEEEEEEBTTSSEEEEECSSTTCEEEEESSSSCC
T ss_pred EEEEEEEECCCCCCcEEEEEec------CCc--------cceEEEEEECCCeeEEEEecCCCcEEEEEECCCCCC
Confidence 344444443 3567888882 222 23445889998844 4566778899999988754
No 10
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=15.64 E-value=2.2e+02 Score=21.56 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcccCCCCCCChh--------hHHHHHHHHHHHHhcCCCCC-CCCCCCcceEEEEEEec
Q 015769 59 TGEENQLIDALIGIQGRGRSASAR--------QLNDVECAVKVLEGLQGVPD-PTGSSLIEGRWQLMFTT 119 (400)
Q Consensus 59 ~~~K~~LL~al~~t~~rG~~as~~--------~r~~I~~lI~~LEalnpt~~-P~~s~lL~G~W~LvyTt 119 (400)
.+..+++|+.|... +-|..++.. .+..|...+..||..+-... +. -+ |.|.+.-..
T Consensus 9 ~~~~~~IL~~L~~~-~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~-~~---~~W~i~~~~ 73 (81)
T 1qbj_A 9 QDQEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG-TP---PLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHH-CTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS-SS---CEEEEC---
T ss_pred hHHHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC-CC---CeeEEeCcH
Confidence 46788899999875 445544422 25789999999999864321 11 12 899887554
Done!