Query 015769
Match_columns 400
No_of_seqs 226 out of 549
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 18:21:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015769.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015769hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ekga_ d.82.2.1 (A:) C-termin 28.3 19 0.0014 27.9 3.3 40 214-255 34-73 (119)
2 d1mu2a2 e.8.1.2 (A:3-429) HIV- 19.4 33 0.0024 32.2 3.6 41 78-118 23-74 (427)
3 d1ew4a_ d.82.2.1 (A:) CyaY {Es 19.1 43 0.0031 25.2 3.6 40 213-255 29-68 (106)
4 d2fqla1 d.82.2.1 (A:61-172) C- 18.8 36 0.0026 25.9 3.1 40 213-255 39-78 (112)
5 d2gu3a1 d.17.1.6 (A:99-161) Un 18.8 28 0.002 24.1 2.1 10 212-222 33-42 (63)
6 d2h9fa2 d.21.1.4 (A:187-395) H 12.8 1.4E+02 0.0099 25.0 5.6 44 212-266 21-67 (209)
7 d2gyc31 a.108.1.1 (3:2-48) Rib 11.8 1.5E+02 0.011 18.9 4.1 30 62-101 3-32 (47)
8 d1p5dx4 d.129.2.1 (X:368-463) 11.4 1.3E+02 0.0094 21.6 4.4 35 215-255 35-69 (96)
9 d2bkfa1 d.15.2.2 (A:1-85) Next 10.1 60 0.0044 23.6 1.9 10 214-223 44-53 (85)
10 d1ik0a_ a.26.1.2 (A:) Interleu 9.8 57 0.0042 24.6 1.7 33 255-292 7-39 (113)
No 1
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.25 E-value=19 Score=27.90 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=32.1
Q ss_pred EEEEEecCCCceEEEeCCCCcEEEEeecCCcccchhhhccCc
Q 015769 214 LDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (400)
Q Consensus 214 ld~tYLD~~~dlRIsRG~kG~~FVl~R~~~~~q~ll~ai~~~ 255 (400)
+|+.|-|. =|-|.=++.|+.||+-|....+|.+|.+..+|
T Consensus 34 ~D~e~~~g--vLti~f~~~~~~~VINkQ~p~~QIWlASp~sG 73 (119)
T d1ekga_ 34 YDVSFGSG--VLTVKLGGDLGTYVINKQTPNKQIWLSSPSSG 73 (119)
T ss_dssp CEEEEETT--EEEEECCTTCCEEEEEEEGGGTEEEEEETTTE
T ss_pred eeeeccCC--EEEEEECCCCcEEEEeCCCCceeEEEEcCCCC
Confidence 56677666 67777667788999999999999999987654
No 2
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=19.40 E-value=33 Score=32.19 Aligned_cols=41 Identities=7% Similarity=0.353 Sum_probs=28.0
Q ss_pred CCChhhHHHHHHHHHHHHhcCCC-----CCCCCCCCc------ceEEEEEEe
Q 015769 78 SASARQLNDVECAVKVLEGLQGV-----PDPTGSSLI------EGRWQLMFT 118 (400)
Q Consensus 78 ~as~~~r~~I~~lI~~LEalnpt-----~~P~~s~lL------~G~W~LvyT 118 (400)
..++++++++.+.|++|+..+-. ..|-.+|.+ .|+|+++--
T Consensus 23 pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~sPvf~V~KKd~gk~Rl~vD 74 (427)
T d1mu2a2 23 PLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLID 74 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBBCEEECCCCC----CEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcCceEEEEcCCCCCcEEEEc
Confidence 36899999999999999998733 345555554 489999864
No 3
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=19.10 E-value=43 Score=25.17 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=31.0
Q ss_pred EEEEEEecCCCceEEEeCCCCcEEEEeecCCcccchhhhccCc
Q 015769 213 WLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (400)
Q Consensus 213 wld~tYLD~~~dlRIsRG~kG~~FVl~R~~~~~q~ll~ai~~~ 255 (400)
-+|+-|-|. =|=|.=++ |+.||+-|-...+|.+|.+.+.+
T Consensus 29 d~D~e~~~g--vLti~~~~-~~~~VINkQ~p~~QIWlaSpsgg 68 (106)
T d1ew4a_ 29 DIDCEINGG--VLTITFEN-GSKIIINRQEPLHQVWLATKQGG 68 (106)
T ss_dssp CCEEEEETT--EEEEECTT-SCEEEEEEETTTTEEEEECSSCE
T ss_pred CeeeeccCC--EEEEEECC-CCEEEEeCCCccceeeEECCCCC
Confidence 356667655 66666664 78999999999999999988654
No 4
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.85 E-value=36 Score=25.95 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=30.4
Q ss_pred EEEEEEecCCCceEEEeCCCCcEEEEeecCCcccchhhhccCc
Q 015769 213 WLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (400)
Q Consensus 213 wld~tYLD~~~dlRIsRG~kG~~FVl~R~~~~~q~ll~ai~~~ 255 (400)
-+|+.|-+. =|-|.-++ |+.||+-|....+|.+|.+..+|
T Consensus 39 d~D~e~~~g--vLti~~~~-~~~~VINkQ~p~~QIWlaSp~sG 78 (112)
T d2fqla1 39 IPDVELSHG--VMTLEIPA-FGTYVINKQPPNKQIWLASPLSG 78 (112)
T ss_dssp SCEEECCSS--EEEEEETT-TEEEEEEECCSSSSEEEEETTTE
T ss_pred ceeeeccCC--EEEEEECC-CCEEEEeCCCchhheeEecCCCC
Confidence 346666555 66676654 78999999999999999987654
No 5
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=18.81 E-value=28 Score=24.12 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=8.2
Q ss_pred eEEEEEEecCC
Q 015769 212 GWLDTTYLSPS 222 (400)
Q Consensus 212 Gwld~tYLD~~ 222 (400)
-| |+||+|++
T Consensus 33 vW-EVtY~~~~ 42 (63)
T d2gu3a1 33 LW-EVTYLDKE 42 (63)
T ss_dssp EE-EEEEECTT
T ss_pred EE-EEEEEeCC
Confidence 35 99999994
No 6
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.80 E-value=1.4e+02 Score=24.98 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=34.7
Q ss_pred eEEEEEEecCCCceEEEeCCCCcEEEEeecCCcc---cchhhhccCchHHHHHHHHHH
Q 015769 212 GWLDTTYLSPSGNLRISRGNKGTTFVLQKKTEPR---QTLLSAISTGTQVEQAINEFI 266 (400)
Q Consensus 212 Gwld~tYLD~~~dlRIsRG~kG~~FVl~R~~~~~---q~ll~ai~~~~~i~~~i~~Le 266 (400)
|-++.|-+|- |+.+||.|..+-- .++.+.+....+..+.++++.
T Consensus 21 ~~i~vS~IDa-----------a~P~Vfv~A~dlG~tG~E~p~el~~~~~ll~~lE~IR 67 (209)
T d2h9fa2 21 GTFKATMINA-----------GIPTVFVNAEEIGYRGTELREEINGDPQQLARFERIR 67 (209)
T ss_dssp EEEEEEEEES-----------SSEEEEEETTTTTCCSCCCTHHHHTCHHHHHHHHHHH
T ss_pred CcEEEEEEeC-----------CCcEEEEEHHHcCCCcccCHHHHhCCHHHHHHHHHHH
Confidence 4567777777 9999999988853 788888888888777777763
No 7
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=11.76 E-value=1.5e+02 Score=18.93 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHhcCCCC
Q 015769 62 ENQLIDALIGIQGRGRSASARQLNDVECAVKVLEGLQGVP 101 (400)
Q Consensus 62 K~~LL~al~~t~~rG~~as~~~r~~I~~lI~~LEalnpt~ 101 (400)
|+++|++|+... --+|-++|.++|...+..
T Consensus 3 ke~Ileaia~MS----------VmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMS----------VMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSC----------HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhh----------HHHHHHHHHHHHHHhCcc
Confidence 789999999862 357888999998876654
No 8
>d1p5dx4 d.129.2.1 (X:368-463) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.44 E-value=1.3e+02 Score=21.58 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=25.2
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEeecCCcccchhhhccCc
Q 015769 215 DTTYLSPSGNLRISRGNKGTTFVLQKKTEPRQTLLSAISTG 255 (400)
Q Consensus 215 d~tYLD~~~dlRIsRG~kG~~FVl~R~~~~~q~ll~ai~~~ 255 (400)
++..+|- +||.-.+ | +++.|.......|.=-+++.
T Consensus 35 ~i~~iDG---vrv~~~d-g--W~liR~SnTEP~lri~~Ea~ 69 (96)
T d1p5dx4 35 NITTLDG---VRVDYPK-G--WGLVRASNTTPVLVLRFEAD 69 (96)
T ss_dssp EEECSSS---EEEEETT-E--EEEEEECSSSSEEEEEEEES
T ss_pred ceeeecc---eEEEecc-c--EEEEEeCCCCCEEEEEEEEC
Confidence 6777877 9998865 5 99999888766555445543
No 9
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.05 E-value=60 Score=23.58 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=8.6
Q ss_pred EEEEEecCCC
Q 015769 214 LDTTYLSPSG 223 (400)
Q Consensus 214 ld~tYLD~~~ 223 (400)
+.+.|+|+++
T Consensus 44 ~~lkY~Ddd~ 53 (85)
T d2bkfa1 44 IQIKYLDEEN 53 (85)
T ss_dssp EEEEEECTTS
T ss_pred ceEEEEcCCC
Confidence 8999999954
No 10
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.83 E-value=57 Score=24.62 Aligned_cols=33 Identities=27% Similarity=0.557 Sum_probs=23.8
Q ss_pred chHHHHHHHHHHHcCCCCCcccccccceeEEEEEeccc
Q 015769 255 GTQVEQAINEFISSNQSTAEEERELLEGEWQMLWSSQM 292 (400)
Q Consensus 255 ~~~i~~~i~~Le~~np~~~p~~~~lL~G~W~L~yts~~ 292 (400)
....+|+|+||...+++.. .+|.+| -|+||-.-
T Consensus 7 ~~aLkELIeeL~nitqnqk---apLCNG--SMVWsVnl 39 (113)
T d1ik0a_ 7 STALRELIEELVNITQNQK---APLCNG--SMVWSINL 39 (113)
T ss_dssp HHHHHHHHHHHHHHHHSCS---SCSSSS--CEEECCCC
T ss_pred cHHHHHHHHHHHhcccccc---CcccCC--ceEEEEec
Confidence 3578999999998876543 577888 46776543
Done!