BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015770
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The
           Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
 pdb|1M2B|B Chain B, Crystal Structure At 1.25 Angstroms Resolution Of The
           Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
          Length = 110

 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 190 YVFVCSH----GSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA---G 242
           +VFVC      G     C   G    E F A ++      Q+F+       G   A   G
Sbjct: 5   HVFVCVQDRPPGHPQGSCAQRGSR--EVFQAFMEKIQTDPQLFMTTVITPTGSMNACMMG 62

Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
            ++V  PD      G WYG V P+DV  I+++H+  GE +ERL
Sbjct: 63  PVVVVYPD------GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99


>pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The
           Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
 pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The
           Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
           Ferredoxin From Aquifex Aeolicus
          Length = 110

 Score = 40.0 bits (92), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 190 YVFVCSH----GSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA---G 242
           +VFVC      G     C   G    E F A ++      Q+F+       G   A   G
Sbjct: 5   HVFVCVQDRPPGHPQGSCAQRGSR--EVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMG 62

Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
            ++V  PD      G WYG V P+DV  I+++H+  GE +ERL
Sbjct: 63  PVVVVYPD------GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99


>pdb|1F37|A Chain A, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
           Aquifex Aeolicus
 pdb|1F37|B Chain B, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
           Aquifex Aeolicus
 pdb|1M2A|A Chain A, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
           Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
           Aeolicus
 pdb|1M2A|B Chain B, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
           Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
           Aeolicus
          Length = 110

 Score = 39.3 bits (90), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 190 YVFVCSH----GSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYA---G 242
           +VFVC      G     C   G    E F A ++      Q+F+       G   A   G
Sbjct: 5   HVFVCVQDRPPGHPQGSCAQRGSR--EVFQAFMEKIQTDPQLFMTTVITPTGCMNACMMG 62

Query: 243 NLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERL 285
            ++V  PD      G WYG V P+DV  I+++H+  GE +ERL
Sbjct: 63  PVVVVYPD------GVWYGQVKPEDVDEIVEKHLKGGEPVERL 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,639,521
Number of Sequences: 62578
Number of extensions: 481244
Number of successful extensions: 907
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 7
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)