Query 015770
Match_columns 400
No_of_seqs 284 out of 1508
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06999 Suc_Fer-like: Sucrase 100.0 5.8E-42 1.3E-46 325.0 19.8 206 79-290 1-230 (230)
2 COG4759 Uncharacterized protei 100.0 2.6E-35 5.7E-40 283.2 13.6 271 76-366 13-302 (316)
3 cd03062 TRX_Fd_Sucrase TRX-lik 99.9 2.9E-25 6.3E-30 185.3 9.6 97 188-290 1-97 (97)
4 cd03063 TRX_Fd_FDH_beta TRX-li 99.5 1.2E-14 2.7E-19 120.2 7.8 77 190-279 2-81 (92)
5 cd02980 TRX_Fd_family Thioredo 99.5 1.5E-14 3.3E-19 114.3 7.5 76 189-275 1-77 (77)
6 COG3411 Ferredoxin [Energy pro 99.4 2.6E-13 5.5E-18 103.9 4.2 58 226-290 2-59 (64)
7 cd03064 TRX_Fd_NuoE TRX-like [ 99.3 2.2E-12 4.7E-17 103.5 6.7 74 188-274 1-79 (80)
8 cd03062 TRX_Fd_Sucrase TRX-lik 99.2 6.6E-11 1.4E-15 98.8 7.8 86 89-178 2-89 (97)
9 cd03083 TRX_Fd_NuoE_hoxF TRX-l 99.1 8.2E-11 1.8E-15 94.8 6.2 74 188-274 1-79 (80)
10 cd03081 TRX_Fd_NuoE_FDH_gamma 99.1 2.2E-10 4.7E-15 92.3 6.4 74 188-274 1-79 (80)
11 PRK07539 NADH dehydrogenase su 99.0 4.8E-10 1E-14 101.1 7.2 77 185-274 71-152 (154)
12 PF01257 2Fe-2S_thioredx: Thio 99.0 6.1E-10 1.3E-14 99.4 7.2 78 184-274 61-143 (145)
13 TIGR01958 nuoE_fam NADH-quinon 98.9 2.1E-09 4.6E-14 96.3 7.2 77 185-274 65-146 (148)
14 COG3411 Ferredoxin [Energy pro 98.9 9E-10 2E-14 84.5 3.9 49 130-178 3-51 (64)
15 cd02980 TRX_Fd_family Thioredo 98.7 3.7E-08 8.1E-13 77.6 6.2 77 89-171 1-77 (77)
16 cd03082 TRX_Fd_NuoE_W_FDH_beta 98.6 4.3E-08 9.4E-13 77.6 5.3 68 189-273 2-70 (72)
17 PRK05988 formate dehydrogenase 98.4 7.2E-07 1.6E-11 80.8 7.5 77 185-274 72-153 (156)
18 PRK07571 bidirectional hydroge 98.4 7.1E-07 1.5E-11 81.9 6.9 78 185-275 85-167 (169)
19 cd03064 TRX_Fd_NuoE TRX-like [ 98.3 7.7E-07 1.7E-11 71.2 5.1 75 88-170 1-79 (80)
20 COG1905 NuoE NADH:ubiquinone o 98.3 1.5E-06 3.3E-11 78.8 6.3 78 185-275 74-156 (160)
21 PRK12373 NADH dehydrogenase su 98.2 2.4E-06 5.3E-11 87.5 7.3 85 185-283 86-176 (400)
22 cd03063 TRX_Fd_FDH_beta TRX-li 98.2 3E-06 6.4E-11 70.4 6.2 78 90-175 2-81 (92)
23 cd03081 TRX_Fd_NuoE_FDH_gamma 97.9 1.7E-05 3.6E-10 63.9 5.3 74 89-170 2-79 (80)
24 PF01257 2Fe-2S_thioredx: Thio 97.8 3.5E-05 7.7E-10 68.8 5.9 82 82-171 59-144 (145)
25 KOG3196 NADH:ubiquinone oxidor 97.8 3.3E-05 7.1E-10 71.8 5.0 86 185-284 110-200 (233)
26 PRK07539 NADH dehydrogenase su 97.6 9.2E-05 2E-09 66.9 5.6 81 82-170 68-152 (154)
27 TIGR01958 nuoE_fam NADH-quinon 97.6 0.00012 2.6E-09 65.6 5.6 81 82-170 62-146 (148)
28 cd03083 TRX_Fd_NuoE_hoxF TRX-l 97.5 0.00016 3.5E-09 58.1 5.1 74 89-170 2-79 (80)
29 PF07845 DUF1636: Protein of u 97.4 0.00065 1.4E-08 58.8 8.2 79 191-274 1-85 (116)
30 PF06999 Suc_Fer-like: Sucrase 97.0 0.0026 5.7E-08 60.4 8.6 90 86-179 130-223 (230)
31 cd03082 TRX_Fd_NuoE_W_FDH_beta 96.8 0.0011 2.3E-08 52.5 3.5 69 89-169 2-70 (72)
32 PRK05988 formate dehydrogenase 96.4 0.0094 2E-07 54.1 6.8 81 83-171 70-154 (156)
33 PRK07571 bidirectional hydroge 96.2 0.012 2.7E-07 54.1 6.6 81 83-171 83-167 (169)
34 COG5469 Predicted metal-bindin 96.0 0.024 5.1E-07 50.2 7.1 85 186-274 15-105 (143)
35 COG1905 NuoE NADH:ubiquinone o 94.8 0.054 1.2E-06 49.5 5.4 78 87-172 76-157 (160)
36 PRK12373 NADH dehydrogenase su 94.2 0.13 2.8E-06 53.4 7.2 80 89-177 91-174 (400)
37 PF07845 DUF1636: Protein of u 93.0 0.36 7.8E-06 41.9 6.9 90 91-180 1-98 (116)
38 COG5469 Predicted metal-bindin 78.7 8.9 0.00019 34.3 7.1 96 91-186 20-126 (143)
39 KOG3196 NADH:ubiquinone oxidor 77.7 4.1 8.9E-05 38.5 4.9 83 85-176 110-196 (233)
40 PF10399 UCR_Fe-S_N: Ubiquitin 76.8 3.3 7.1E-05 29.5 3.1 28 372-399 10-38 (41)
41 PF07293 DUF1450: Protein of u 61.6 34 0.00074 27.7 6.4 69 188-277 2-73 (78)
42 PF13908 Shisa: Wnt and FGF in 39.9 22 0.00049 32.5 2.5 26 319-344 16-41 (179)
43 PF05961 Chordopox_A13L: Chord 39.6 32 0.00069 27.1 2.8 22 378-399 5-26 (68)
44 PRK13669 hypothetical protein; 35.6 1.3E+02 0.0028 24.4 5.9 48 188-248 2-52 (78)
45 TIGR00853 pts-lac PTS system, 31.0 89 0.0019 25.8 4.4 44 205-250 14-59 (95)
46 PF12669 P12: Virus attachment 29.5 46 0.001 25.3 2.3 10 390-399 14-24 (58)
47 cd05565 PTS_IIB_lactose PTS_II 28.5 1.3E+02 0.0028 25.3 5.0 27 205-233 11-37 (99)
48 cd05564 PTS_IIB_chitobiose_lic 26.4 87 0.0019 25.7 3.6 44 205-250 10-55 (96)
49 PHA03049 IMV membrane protein; 25.1 78 0.0017 24.9 2.8 22 378-399 5-26 (68)
50 PRK09566 nirA ferredoxin-nitri 25.1 2.1E+02 0.0047 30.7 7.2 45 188-235 391-439 (513)
51 PF05283 MGC-24: Multi-glycosy 24.0 50 0.0011 31.1 1.9 17 382-398 170-186 (186)
52 TIGR02811 formate_TAT formate 23.8 73 0.0016 24.9 2.5 22 371-392 9-30 (66)
53 COG4759 Uncharacterized protei 22.8 1.3E+02 0.0028 30.4 4.6 77 87-169 130-208 (316)
54 PF00819 Myotoxins: Myotoxin; 22.5 21 0.00045 25.0 -0.7 16 235-250 7-22 (43)
55 PRK10310 PTS system galactitol 22.1 1.5E+02 0.0032 24.3 4.2 33 191-232 6-39 (94)
56 COG3414 SgaB Phosphotransferas 21.3 3E+02 0.0065 22.8 5.8 51 190-247 4-55 (93)
57 PRK10499 PTS system N,N'-diace 21.2 2.1E+02 0.0045 24.1 5.0 52 190-250 6-59 (106)
58 PRK13504 sulfite reductase sub 21.2 3.3E+02 0.0072 29.6 7.8 50 188-241 428-485 (569)
59 TIGR02066 dsrB sulfite reducta 20.9 2.2E+02 0.0048 29.0 6.0 82 154-241 69-157 (341)
60 PF05569 Peptidase_M56: BlaR1 20.6 1.8E+02 0.0039 28.5 5.2 68 208-283 141-214 (299)
61 COG2221 DsrA Dissimilatory sul 20.3 8E+02 0.017 25.1 9.6 98 156-266 72-172 (317)
No 1
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=100.00 E-value=5.8e-42 Score=324.97 Aligned_cols=206 Identities=42% Similarity=0.740 Sum_probs=167.1
Q ss_pred CCCCCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCC----------CCCCeEE
Q 015770 79 KLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGE----------GTDGDVL 148 (400)
Q Consensus 79 ~L~GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~c----------g~gp~VL 148 (400)
||+||++.|.+||+|++ ++.+||++.++.. ..+++.|.+.++........+..+++..+.. .....++
T Consensus 1 pL~Gta~~~~~hvli~~-~~~~W~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 78 (230)
T PF06999_consen 1 PLIGTAPPYDRHVLIET-GPGDWPSDALDSK-SSLPQALSAALKARKKKLGVRFLLIRRPGRISNSSLPEPSRPKPGDVL 78 (230)
T ss_pred CcCcccCcCcEEEEEEc-CCCCCCcchhcCC-cchHHHHHHHHHHhhcccCccccceecCCcccccccccccCCCCceEE
Confidence 79999999999999887 7899999765532 4688889989887665555555555554432 3356899
Q ss_pred EecCcEEeccCCCcchhHHHHHHhhCCCC--------------CCCCCCCCCCCcEEEEccCCCCCCCcccccHHHHHHH
Q 015770 149 IFPEMIKYEGLKESDVDSFVDDVLVNGKP--------------WASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKF 214 (400)
Q Consensus 149 VfPd~iwY~~vt~~dVd~~Vee~L~~G~~--------------~l~g~~e~~~~~~IlVCth~~RD~rCg~~G~~l~~aL 214 (400)
|||++++|..++....+++++.++..... +.+...+...+++||||+|++||+|||+.|++|+++|
T Consensus 79 v~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVCtHg~RD~rCg~~Gp~l~~~l 158 (230)
T PF06999_consen 79 VFPDFKIYRFVTRSNVQEFVEDLLDLDLPAVTALPRQSSAAPDKLPFPREPPDKPLILVCTHGKRDKRCGILGPPLAREL 158 (230)
T ss_pred EEcccEEeccccchhhHHHHHHhccccccccccccCccccccccCCCCcccCCCCEEEEcCCCCcCCchhcccHHHHHHH
Confidence 99999999988888888887765544332 1112234467899999999999999999999999999
Q ss_pred HHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCCHHHHHHHHHHCCccccceeccCC
Q 015770 215 NAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL 290 (400)
Q Consensus 215 ~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~~ 290 (400)
++++.+.+|...+ ||++||+|||+||||||+|.. .+.+|+|||+|+|++|+.||++++.+|+++.++|||+|
T Consensus 159 ~~~~~~~~l~~~~-V~~iSHiGGHkfAgNvIiy~~---~~p~g~wyGrv~p~~v~~iv~~t~~~g~vi~~~~RG~~ 230 (230)
T PF06999_consen 159 EKELRERGLSRDR-VWEISHIGGHKFAGNVIIYSK---PKPDGIWYGRVTPEDVEGIVDATILDGKVIPELYRGRM 230 (230)
T ss_pred HHHhhhcCCccce-EEEecccccceecCeEEEEec---CCCcEEEEEeeCHHHHHHHHHHHHhCCcCcCccCcCCC
Confidence 9999999997644 999999999999999999921 11269999999999999999998999999999999997
No 2
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=283.17 Aligned_cols=271 Identities=19% Similarity=0.309 Sum_probs=209.7
Q ss_pred cCCCCCCCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCC--C-CeEEEe--
Q 015770 76 YKEKLAGTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGT--D-GDVLIF-- 150 (400)
Q Consensus 76 ~~e~L~GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~--g-p~VLVf-- 150 (400)
..|+++||+..++. ||+.|.|+||+....+ +++++..|...++..-.... -..+.+-+.+... + ..+++|
T Consensus 13 ~~EDpIGTa~~~~~--ylliE~pqPW~~~~~~--s~~ip~~l~dl~~~~~~~~~-~~~l~i~~d~ey~~~g~tr~~~y~~ 87 (316)
T COG4759 13 NGEDPIGTANTRDG--YLLIEAPQPWTENVLD--SKPIPQNLQDLLEELYKAGG-VIPLAIAPDREYSQPGYTRVLIYRR 87 (316)
T ss_pred cCCCCCCcccccce--EEEEeCCCCccccccc--CCCCChhHHHHHHHHHhcCC-ceeEEEeeccccCCCCceEEEEEec
Confidence 36999999999997 8888999999997665 46777777766655422211 2344444443332 2 256666
Q ss_pred cCcEEecc-------CCCcchhHHHHHHhhCCCCCCCCCCCCCCCcEEEEccCCCCCCCcccccHHHHHHHHHHHHhCCC
Q 015770 151 PEMIKYEG-------LKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGL 223 (400)
Q Consensus 151 Pd~iwY~~-------vt~~dVd~~Vee~L~~G~~~l~g~~e~~~~~~IlVCth~~RD~rCg~~G~~l~~aL~~~l~~~gL 223 (400)
|.. .|.. +++.....++...+..|+....-.....+.+.|||||||++|+||++.|.++|+.++..++...+
T Consensus 88 ~~~-~fa~y~K~E~lv~d~~~~~l~l~l~~~~~~l~~~~~~~~h~RdiLVCTHgn~D~cCarfG~P~Y~~~r~~~a~l~~ 166 (316)
T COG4759 88 PAK-LFAGYSKQEFLVPDAELGVLILALLLQGKELAQFDIYPQHTRDILVCTHGNVDVCCARFGYPFYQQLRAQYADLNL 166 (316)
T ss_pred HHH-hhhhheeeEEecccchhhhhHHHHhcCCccchhhccchhhhceEEEecCCChhhhhhhcCcHHHHHHHHhhhhccc
Confidence 322 2222 22333344444444444432111122336679999999999999999999999999999999887
Q ss_pred CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCCHHHHHHHHHHCCccccceeccCCCCC-hHHHHHHhh
Q 015770 224 KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQLGQS-AEVEKVDEK 302 (400)
Q Consensus 224 ~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~~~~~-~~q~~~~e~ 302 (400)
. +++||++||+|||+||+.+|.+| +|.+||+++++....||... .+-+-+..++|||.+|| .+|++|+|+
T Consensus 167 ~-~lRvWq~SHfgGHrFAPTlidlP-------~GqyyG~Ld~~~~~~l~~r~-gdvk~L~~~YRGWg~L~~~~QI~Erei 237 (316)
T COG4759 167 E-NLRVWQSSHFGGHRFAPTLIDLP-------QGQYYGHLDPESLDSLLTRT-GDVKQLKPFYRGWGGLPKFEQIAEREI 237 (316)
T ss_pred c-ceEEEEecccCccccCchhhcCC-------CCceeeecCHHHHHHHHhcc-CchhhhhhhccCCcCCCHHHHHHHHHH
Confidence 6 59999999999999999999988 69999999999999999764 44455889999999999 999999999
Q ss_pred hccCC----Ccccccc--ccccCCcceeccCcCcccccCCCCeeEecCCCCCcccccccccccCccccCc
Q 015770 303 KLPNG----KEESKSK--KLEDGNTQVTKENVTGGCCQGASGFSCCKDRSSDVTGENKQIETKGQGRLSS 366 (400)
Q Consensus 303 r~~~G----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 366 (400)
++++| ||+++++ +|+.|++.+..++. +.+++|+.++++.+++|++ .+....+++|+.+.
T Consensus 238 ~~~~GW~W~nY~~s~qvl~qd~d~~~~~v~i~---ft~pDg~i~~~~~~rVE~~--g~v~t~~~Sc~~~~ 302 (316)
T COG4759 238 WMQHGWDWLNYKKSGQVLEQDEDENWAEVEID---FTSPDGDIWGYYLARVEVE--GSVMTVRSSCGDPQ 302 (316)
T ss_pred HHHhchhhhccccceeEEeeccCCcceeEEEE---EEcCCCCeeeEEEEEEEec--CcEEEEEecCCCCC
Confidence 99999 9999998 88999999999998 9999999999999999998 67778888888743
No 3
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=99.92 E-value=2.9e-25 Score=185.28 Aligned_cols=97 Identities=49% Similarity=0.979 Sum_probs=88.2
Q ss_pred CcEEEEccCCCCCCCcccccHHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCC
Q 015770 188 GSYVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD 267 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~d 267 (400)
.++||||+|++||.||+..|++|+++|++++.++|. ++|.|+.|||+|||+|++|||+||+. +|+|||+|+|+|
T Consensus 1 ~~~ilVCth~rrd~~C~~~g~~l~~~l~~~l~~~~~-~~v~v~~~~clG~c~~gp~vvvyP~~-----~g~wy~~v~p~~ 74 (97)
T cd03062 1 DPLVLVCTHGKRDKRCGICGPPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFAGNVIIYPKG-----DGIWYGRVTPEH 74 (97)
T ss_pred CCEEEEeCCCCCCcChhhcCHHHHHHHHHHHHHhCC-CceEEEeCCcCCccCcCCEEEEEeCC-----CeeEEeecCHHH
Confidence 369999999999999999999999999999999984 57999999999999999888876642 489999999999
Q ss_pred HHHHHHHHHHCCccccceeccCC
Q 015770 268 VPAILDQHIAKGEIIERLWRGQL 290 (400)
Q Consensus 268 v~~Iv~~hl~~G~iv~~l~rG~~ 290 (400)
+++||++|+.+|+++++++++.+
T Consensus 75 v~~Iv~~hl~~g~~v~~~~~~~~ 97 (97)
T cd03062 75 VPPIVDRLILGGKIIPELRRGGI 97 (97)
T ss_pred HHHHHHHHhcCCcCCcccccCCC
Confidence 99999999999999999988753
No 4
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=99.55 E-value=1.2e-14 Score=120.25 Aligned_cols=77 Identities=29% Similarity=0.413 Sum_probs=69.7
Q ss_pred EEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEc-CCCCCCccc-eEEeccCCC
Q 015770 190 YVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS-PDSEGKIMG-HWYGYVTPD 266 (400)
Q Consensus 190 ~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~-p~~~~~~~g-~wYg~Vtp~ 266 (400)
+|+||+++ +|-.+| .+++++|+++++++|| ++.|.+|||+ |+|+.||+|.+. |+ | +.|++|+|+
T Consensus 2 ~I~Vc~gT----~ciAaGA~~V~~al~~ei~~~gl--~v~v~~tGC~-G~C~~ePlV~V~~p~------g~v~Y~~V~~e 68 (92)
T cd03063 2 RIYVPRDA----AALALGADEVAEAIEAEAAARGL--AATIVRNGSR-GMYWLEPLVEVETPG------GRVAYGPVTPA 68 (92)
T ss_pred EEEEeCCh----hhhhhCHHHHHHHHHHHHHHcCC--eEEEEEecCc-eecCCCCEEEEEeCC------CcEEEEeCCHH
Confidence 69999985 776676 7999999999999999 5999999999 899999999885 76 5 999999999
Q ss_pred CHHHHHHHHHHCC
Q 015770 267 DVPAILDQHIAKG 279 (400)
Q Consensus 267 dv~~Iv~~hl~~G 279 (400)
|+++||++|+.++
T Consensus 69 dv~~Iv~~~~~~~ 81 (92)
T cd03063 69 DVASLLDAGALEG 81 (92)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999998854
No 5
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=99.54 E-value=1.5e-14 Score=114.27 Aligned_cols=76 Identities=33% Similarity=0.663 Sum_probs=68.1
Q ss_pred cEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCC
Q 015770 189 SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD 267 (400)
Q Consensus 189 ~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~d 267 (400)
.+|+||++. +|...| +.|+++|++++...++++.|.|..++|+ |.|..||+|.+.|+ +.||++|+|++
T Consensus 1 ~~I~VC~~~----~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Cl-g~C~~~P~v~i~~~------~~~y~~v~~~~ 69 (77)
T cd02980 1 HHILVCTGT----ACGLRGAEELLEALEKELGIRGGDGRVTVERVGCL-GACGLAPVVVVYPD------GVWYGRVTPED 69 (77)
T ss_pred CEEEEccCC----CcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCc-CcccCCCEEEEeCC------CeEEccCCHHH
Confidence 479999996 899995 7999999999999999889999999999 66778888888765 79999999999
Q ss_pred HHHHHHHH
Q 015770 268 VPAILDQH 275 (400)
Q Consensus 268 v~~Iv~~h 275 (400)
+++||++|
T Consensus 70 ~~~il~~~ 77 (77)
T cd02980 70 VEEIVEEL 77 (77)
T ss_pred HHHHHHhC
Confidence 99999874
No 6
>COG3411 Ferredoxin [Energy production and conversion]
Probab=99.39 E-value=2.6e-13 Score=103.94 Aligned_cols=58 Identities=29% Similarity=0.495 Sum_probs=53.7
Q ss_pred cEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCCHHHHHHHHHHCCccccceeccCC
Q 015770 226 QIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIAKGEIIERLWRGQL 290 (400)
Q Consensus 226 ~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~~ 290 (400)
.|++.+++|+ |.|..||+++++|+ |+||++|+|+++++||++||.+|++++++.....
T Consensus 2 ~i~~t~tgCl-~~C~~gPvl~vYpe------gvWY~~V~p~~a~rIv~~hl~~Gr~Ve~~~~~~~ 59 (64)
T COG3411 2 SIRVTRTGCL-GVCQDGPVLVVYPE------GVWYTRVDPEDARRIVQSHLLGGRPVEELIYHTG 59 (64)
T ss_pred ceEEeecchh-hhhccCCEEEEecC------CeeEeccCHHHHHHHHHHHHhCCCcchhhcccCC
Confidence 4899999999 89999999999998 8999999999999999999999999999876543
No 7
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=99.34 E-value=2.2e-12 Score=103.47 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=65.3
Q ss_pred CcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCC----CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEec
Q 015770 188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGL----KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY 262 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL----~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~ 262 (400)
+.+|+||++. +|...| .+++++|++++..+++ ++.|.|..++|+ |.|..||+|++. |.||++
T Consensus 1 ~~~v~vC~~~----~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~Cl-G~C~~gP~v~v~--------g~~y~~ 67 (80)
T cd03064 1 KHVIRVCTGT----ACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECL-GACDLAPVMMIN--------DDVYGR 67 (80)
T ss_pred CEEEEECCCc----HHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCc-CcCCCCCEEEEC--------CEEECC
Confidence 4689999995 898887 7999999999986543 567999999999 899999999995 799999
Q ss_pred cCCCCHHHHHHH
Q 015770 263 VTPDDVPAILDQ 274 (400)
Q Consensus 263 Vtp~dv~~Iv~~ 274 (400)
|+|+++++||++
T Consensus 68 vt~~~i~~i~~~ 79 (80)
T cd03064 68 LTPEKVDAILEA 79 (80)
T ss_pred CCHHHHHHHHHh
Confidence 999999999974
No 8
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=99.18 E-value=6.6e-11 Score=98.84 Aligned_cols=86 Identities=24% Similarity=0.363 Sum_probs=71.4
Q ss_pred eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEec--CcEEeccCCCcchhH
Q 015770 89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFP--EMIKYEGLKESDVDS 166 (400)
Q Consensus 89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfP--d~iwY~~vt~~dVd~ 166 (400)
.|||||+....+ .+|...+ ..|.+.|++++.+++. ..+++..+.|+|.|..+|.++||| |++||..++++|+++
T Consensus 2 ~~ilVCth~rrd--~~C~~~g-~~l~~~l~~~l~~~~~-~~v~v~~~~clG~c~~gp~vvvyP~~~g~wy~~v~p~~v~~ 77 (97)
T cd03062 2 PLVLVCTHGKRD--KRCGICG-PPLAAELRAELPEHGP-GGVRVWEVSHVGGHKFAGNVIIYPKGDGIWYGRVTPEHVPP 77 (97)
T ss_pred CEEEEeCCCCCC--cChhhcC-HHHHHHHHHHHHHhCC-CceEEEeCCcCCccCcCCEEEEEeCCCeeEEeecCHHHHHH
Confidence 699999865432 4666543 5688888888887762 346778899999999999999999 999999999999999
Q ss_pred HHHHHhhCCCCC
Q 015770 167 FVDDVLVNGKPW 178 (400)
Q Consensus 167 ~Vee~L~~G~~~ 178 (400)
||++|+.+++++
T Consensus 78 Iv~~hl~~g~~v 89 (97)
T cd03062 78 IVDRLILGGKII 89 (97)
T ss_pred HHHHHhcCCcCC
Confidence 999999987765
No 9
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=99.14 E-value=8.2e-11 Score=94.78 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=64.7
Q ss_pred CcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCC--C--CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEec
Q 015770 188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRG--L--KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY 262 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~g--L--~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~ 262 (400)
+.+|.||+.. .|..+| ..++++|+++|..++ + ++.+.+..++|+ |.|+.||+|.+. +.||++
T Consensus 1 ~~~i~vC~~~----~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gCl-G~C~~~P~v~V~--------~~~y~~ 67 (80)
T cd03083 1 KYRIYLSDSI----TDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCT-GLCDQGPALLIN--------NRVFTR 67 (80)
T ss_pred CEEEEEcCCh----HHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEecee-cCcCCCCeEEEC--------CEEECC
Confidence 3679999986 899987 799999999997554 4 556999999999 899999999994 789999
Q ss_pred cCCCCHHHHHHH
Q 015770 263 VTPDDVPAILDQ 274 (400)
Q Consensus 263 Vtp~dv~~Iv~~ 274 (400)
|+|+++++||+.
T Consensus 68 v~~~~v~~iv~~ 79 (80)
T cd03083 68 LTPGRIDQIAEL 79 (80)
T ss_pred CCHHHHHHHHhc
Confidence 999999999964
No 10
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=99.08 E-value=2.2e-10 Score=92.33 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=64.7
Q ss_pred CcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEec
Q 015770 188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGY 262 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~ 262 (400)
+.+|.||++. .|...| ..|+++|+++|. +...++.+.|..++|+ |.|..||++++. +.||++
T Consensus 1 ~~~i~vC~~~----~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~Cl-G~C~~gP~~~v~--------~~~~~~ 67 (80)
T cd03081 1 RHVLKLCRAE----ACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCL-GLCACSPAAMID--------GEVHGR 67 (80)
T ss_pred CeEEEEcCCh----HHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeec-CccCCCCEEEEC--------CEEECC
Confidence 3679999986 999997 799999999997 3345667999999999 899999999984 789999
Q ss_pred cCCCCHHHHHHH
Q 015770 263 VTPDDVPAILDQ 274 (400)
Q Consensus 263 Vtp~dv~~Iv~~ 274 (400)
++|+++++||++
T Consensus 68 ~~~e~i~~il~~ 79 (80)
T cd03081 68 VDPEKFDALLAE 79 (80)
T ss_pred CCHHHHHHHHHc
Confidence 999999999964
No 11
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=99.03 E-value=4.8e-10 Score=101.09 Aligned_cols=77 Identities=16% Similarity=0.355 Sum_probs=67.4
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH-hCCC---CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID-SRGL---KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~-~~gL---~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w 259 (400)
+..+.+|+||++. +|..+| ..++++|+++|. +.|. ++.+.+..++|+ |.|..||+|.+. +.|
T Consensus 71 p~gk~~I~VC~g~----~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~Cl-G~C~~gPvv~V~--------~~~ 137 (154)
T PRK07539 71 PVGRHVIQVCTST----PCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECL-GACDNAPVVMIN--------DDT 137 (154)
T ss_pred CCCCEEEEEcCCc----hHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEcccc-CccCCCCEEEEC--------CEE
Confidence 4456789999996 899887 699999999998 5553 567999999999 899999999996 679
Q ss_pred EeccCCCCHHHHHHH
Q 015770 260 YGYVTPDDVPAILDQ 274 (400)
Q Consensus 260 Yg~Vtp~dv~~Iv~~ 274 (400)
|++|||+++++||++
T Consensus 138 y~~vt~e~v~~il~~ 152 (154)
T PRK07539 138 YEDLTPEKIDELLDE 152 (154)
T ss_pred eCCCCHHHHHHHHHh
Confidence 999999999999975
No 12
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=99.02 E-value=6.1e-10 Score=99.43 Aligned_cols=78 Identities=24% Similarity=0.499 Sum_probs=66.2
Q ss_pred CCCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccce
Q 015770 184 EGLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH 258 (400)
Q Consensus 184 e~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~ 258 (400)
++..+.+|+||++. +|...| ..|+++|+++|. +...++.+.|..++|+ |.|..||+|.+. |.
T Consensus 61 ~p~gk~~I~VC~g~----~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~Cl-G~C~~aP~v~V~--------~~ 127 (145)
T PF01257_consen 61 EPKGKHHIRVCTGT----SCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCL-GACDQAPVVMVD--------GE 127 (145)
T ss_dssp SS--SEEEEEE-SH----HHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSS-SSGGGSSEEEEC--------CC
T ss_pred CCCCCcEEEeCCCc----hHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCc-cccCCCCEEEEC--------CE
Confidence 34456899999996 899997 699999999995 3456778999999999 899999999994 78
Q ss_pred EEeccCCCCHHHHHHH
Q 015770 259 WYGYVTPDDVPAILDQ 274 (400)
Q Consensus 259 wYg~Vtp~dv~~Iv~~ 274 (400)
||++|||+++.+||++
T Consensus 128 ~y~~vt~e~v~~il~~ 143 (145)
T PF01257_consen 128 WYGNVTPEKVDEILEE 143 (145)
T ss_dssp EEESSSCCHHHHHHHH
T ss_pred EECCCCHHHHHHHHHh
Confidence 9999999999999986
No 13
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=98.93 E-value=2.1e-09 Score=96.26 Aligned_cols=77 Identities=14% Similarity=0.377 Sum_probs=66.2
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCC----CCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRG----LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~g----L~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w 259 (400)
+..+.+|+||++. +|...| ..|+++|+++|.... .++.+.+..++|+ |.|..||+|.+. +.|
T Consensus 65 p~gk~~I~VC~g~----~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~Cl-G~C~~aP~v~V~--------~~~ 131 (148)
T TIGR01958 65 PVGRYHLQVCTNV----PCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECL-GACGNAPVMMIN--------DDY 131 (148)
T ss_pred CCCCEEEEEcCCc----hhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCcc-CccCCCCEEEEC--------CEE
Confidence 4456799999996 898887 699999999997432 3567999999999 899999999997 579
Q ss_pred EeccCCCCHHHHHHH
Q 015770 260 YGYVTPDDVPAILDQ 274 (400)
Q Consensus 260 Yg~Vtp~dv~~Iv~~ 274 (400)
|++|||+++++||++
T Consensus 132 y~~vt~e~v~~il~~ 146 (148)
T TIGR01958 132 YEFLTPEKLDELLER 146 (148)
T ss_pred eCCCCHHHHHHHHHh
Confidence 999999999999975
No 14
>COG3411 Ferredoxin [Energy production and conversion]
Probab=98.92 E-value=9e-10 Score=84.55 Aligned_cols=49 Identities=22% Similarity=0.405 Sum_probs=45.7
Q ss_pred ceeeeeccCCCCCCCCeEEEecCcEEeccCCCcchhHHHHHHhhCCCCC
Q 015770 130 VKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFVDDVLVNGKPW 178 (400)
Q Consensus 130 vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dVd~~Vee~L~~G~~~ 178 (400)
++++-+.|++.|..||.++||||++||.+++++++++|+++||.+|++-
T Consensus 3 i~~t~tgCl~~C~~gPvl~vYpegvWY~~V~p~~a~rIv~~hl~~Gr~V 51 (64)
T COG3411 3 IRVTRTGCLGVCQDGPVLVVYPEGVWYTRVDPEDARRIVQSHLLGGRPV 51 (64)
T ss_pred eEEeecchhhhhccCCEEEEecCCeeEeccCHHHHHHHHHHHHhCCCcc
Confidence 5677899999999999999999999999999999999999999998764
No 15
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=98.69 E-value=3.7e-08 Score=77.59 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=65.2
Q ss_pred eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcchhHHH
Q 015770 89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFV 168 (400)
Q Consensus 89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dVd~~V 168 (400)
.||+||... .|...++..+.+.|.+++...+.+..+.+..+.|.|.|..+|.|+|+|++.||..++++++++|+
T Consensus 1 ~~I~VC~~~------~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~~~~~y~~v~~~~~~~il 74 (77)
T cd02980 1 HHILVCTGT------ACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGVWYGRVTPEDVEEIV 74 (77)
T ss_pred CEEEEccCC------CcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeCCCeEEccCCHHHHHHHH
Confidence 379999743 56666677888999999988766556777889999999999999999999999999999999998
Q ss_pred HHH
Q 015770 169 DDV 171 (400)
Q Consensus 169 ee~ 171 (400)
++|
T Consensus 75 ~~~ 77 (77)
T cd02980 75 EEL 77 (77)
T ss_pred HhC
Confidence 764
No 16
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=98.64 E-value=4.3e-08 Score=77.64 Aligned_cols=68 Identities=19% Similarity=0.260 Sum_probs=60.4
Q ss_pred cEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEEeccCCCC
Q 015770 189 SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPDD 267 (400)
Q Consensus 189 ~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~d 267 (400)
..|.||++. .|...| ..|+++|+++|... .+.+..++|+ |.|..||+++++ +..|++++|++
T Consensus 2 ~~I~vC~~~----~C~~~Ga~~l~~~l~~~L~~~----~v~l~~~~Cl-G~C~~gP~v~V~--------~~~~~~~t~~~ 64 (72)
T cd03082 2 LTVRVCDSL----SCAMAGAEELLAALEAGLGPE----GVRVVRAPCV-GRCERAPAALVG--------QRPVDGATPAA 64 (72)
T ss_pred eEEEEcCCh----HHHHCCHHHHHHHHHHHhCCC----eEEEEecCcC-CccCCCCeEEEC--------CEEeCCcCHHH
Confidence 579999996 999987 69999999998542 5999999999 899999999997 67899999999
Q ss_pred HHHHHH
Q 015770 268 VPAILD 273 (400)
Q Consensus 268 v~~Iv~ 273 (400)
++++++
T Consensus 65 i~~~~~ 70 (72)
T cd03082 65 VAAAVE 70 (72)
T ss_pred HHHHHh
Confidence 999886
No 17
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=98.41 E-value=7.2e-07 Score=80.85 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=66.4
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w 259 (400)
+..+.+|.||++. .|...| ..|+++|+++|. +-..++.+.+..+.|+ |.|..||++.+. +..
T Consensus 72 p~Gk~~I~VC~~~----~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~Cl-G~C~~aP~~~in--------~~~ 138 (156)
T PRK05988 72 PPGRHVLKLCRAE----ACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCL-GLCACSPAAMLD--------GEV 138 (156)
T ss_pred CCCCEEEEEeCCc----hhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-CccCCCCeEEEC--------CEE
Confidence 4567889999996 999997 799999999986 2234567999999999 899999999995 679
Q ss_pred EeccCCCCHHHHHHH
Q 015770 260 YGYVTPDDVPAILDQ 274 (400)
Q Consensus 260 Yg~Vtp~dv~~Iv~~ 274 (400)
|++|||+++++|+++
T Consensus 139 ~~~lt~~~~~~il~~ 153 (156)
T PRK05988 139 HGRLDPQRLDALLAE 153 (156)
T ss_pred eCCCCHHHHHHHHHH
Confidence 999999999999976
No 18
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=98.38 E-value=7.1e-07 Score=81.90 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=67.0
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w 259 (400)
+..+..|.||++. .|...| ..|+++|+++|. +..-++.+.+..+.|+ |.|..||++.+. +..
T Consensus 85 P~Gk~~I~VC~g~----aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~Cl-G~C~~AP~~~Vn--------~~~ 151 (169)
T PRK07571 85 PSGEHTCVVCTGT----ACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCL-GACGIAPAVVFD--------GKV 151 (169)
T ss_pred CCCCEEEEEcCCh----HHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEeccc-CccCCCCeEEEC--------CEE
Confidence 4467789999996 899987 799999999986 2334567999999999 899999999996 789
Q ss_pred EeccCCCCHHHHHHHH
Q 015770 260 YGYVTPDDVPAILDQH 275 (400)
Q Consensus 260 Yg~Vtp~dv~~Iv~~h 275 (400)
|++|+|+++++||++.
T Consensus 152 ~~~lt~e~v~~il~~~ 167 (169)
T PRK07571 152 AGKQTPESVLEKVQGW 167 (169)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 9999999999999863
No 19
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=98.33 E-value=7.7e-07 Score=71.23 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=59.2
Q ss_pred ceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcc
Q 015770 88 GRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESD 163 (400)
Q Consensus 88 ~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~d 163 (400)
++||+||... .|...++..+.+.|.+.++.... +..+.+.-+.|+|.|..+|.|+|+ ++||..+++++
T Consensus 1 ~~~v~vC~~~------~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v~--g~~y~~vt~~~ 72 (80)
T cd03064 1 KHVIRVCTGT------ACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMIN--DDVYGRLTPEK 72 (80)
T ss_pred CEEEEECCCc------HHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEEC--CEEECCCCHHH
Confidence 4689999743 56666777788888888765432 334566779999999999999994 89999999999
Q ss_pred hhHHHHH
Q 015770 164 VDSFVDD 170 (400)
Q Consensus 164 Vd~~Vee 170 (400)
+++|+++
T Consensus 73 i~~i~~~ 79 (80)
T cd03064 73 VDAILEA 79 (80)
T ss_pred HHHHHHh
Confidence 9999875
No 20
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=98.27 E-value=1.5e-06 Score=78.82 Aligned_cols=78 Identities=18% Similarity=0.402 Sum_probs=67.6
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHH----hCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEID----SRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~----~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w 259 (400)
+..+.+|-||++. .|...| ..++++|++.|. +---++.+.+..+.|+ |-|..+|++++. +..
T Consensus 74 P~Gr~~i~VC~~t----~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~Cl-GaC~~AP~vmin--------d~~ 140 (160)
T COG1905 74 PVGRHHIRVCTGT----ACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECL-GACGQAPVVMIN--------DDV 140 (160)
T ss_pred cCCCeEEEEeCCc----HHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeee-cccccCCEEEEC--------Cch
Confidence 4557899999996 999998 699999999987 3344678999999999 889999999996 678
Q ss_pred EeccCCCCHHHHHHHH
Q 015770 260 YGYVTPDDVPAILDQH 275 (400)
Q Consensus 260 Yg~Vtp~dv~~Iv~~h 275 (400)
|+++||+.+.+||++.
T Consensus 141 ~~~lt~e~l~eil~~~ 156 (160)
T COG1905 141 YGRLTPEKLEEILEKL 156 (160)
T ss_pred hccCCHHHHHHHHHHH
Confidence 9999999999999874
No 21
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=98.23 E-value=2.4e-06 Score=87.52 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=71.1
Q ss_pred CCCC-cEEEEccCCCCCCCccccc-HHHHHHHHHHHHhC----CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccce
Q 015770 185 GLTG-SYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH 258 (400)
Q Consensus 185 ~~~~-~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~----gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~ 258 (400)
+..+ .+|.||+.. .|..+| ..|++.|+++|.-. .-++.+.+..+.|| |.|..+|+|.+. +.
T Consensus 86 P~Gk~~~I~VC~~t----~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCL-GaC~~APv~~In--------d~ 152 (400)
T PRK12373 86 PVGTRAHIQVCGTT----PCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECL-GACVNAPMVQIG--------KD 152 (400)
T ss_pred CCCCceEEEEcCCh----HHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeec-CccCCCCeEEEC--------CE
Confidence 3344 689999996 999997 79999999998632 23456899999999 899999999996 67
Q ss_pred EEeccCCCCHHHHHHHHHHCCcccc
Q 015770 259 WYGYVTPDDVPAILDQHIAKGEIIE 283 (400)
Q Consensus 259 wYg~Vtp~dv~~Iv~~hl~~G~iv~ 283 (400)
+|++||++++.+||++ +..|+.+.
T Consensus 153 ~y~~LTpe~v~~IL~~-l~ag~~~~ 176 (400)
T PRK12373 153 YYEDLTPERLEEIIDA-FAAGKGPV 176 (400)
T ss_pred EeCCCCHHHHHHHHHH-HhCCCCCC
Confidence 9999999999999987 68888654
No 22
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=98.21 E-value=3e-06 Score=70.41 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=65.5
Q ss_pred EEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe-cCc-EEeccCCCcchhHH
Q 015770 90 HVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF-PEM-IKYEGLKESDVDSF 167 (400)
Q Consensus 90 HVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVf-Pd~-iwY~~vt~~dVd~~ 167 (400)
+|+||... .|.+.++..+.++|.+++++++. .+.+..++|.|.|..+|.|-|+ |++ +.|..++++|+++|
T Consensus 2 ~I~Vc~gT------~ciAaGA~~V~~al~~ei~~~gl--~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~I 73 (92)
T cd03063 2 RIYVPRDA------AALALGADEVAEAIEAEAAARGL--AATIVRNGSRGMYWLEPLVEVETPGGRVAYGPVTPADVASL 73 (92)
T ss_pred EEEEeCCh------hhhhhCHHHHHHHHHHHHHHcCC--eEEEEEecCceecCCCCEEEEEeCCCcEEEEeCCHHHHHHH
Confidence 47777532 45566778889999999998876 4667889999999999999997 999 99999999999999
Q ss_pred HHHHhhCC
Q 015770 168 VDDVLVNG 175 (400)
Q Consensus 168 Vee~L~~G 175 (400)
+++|+.+.
T Consensus 74 v~~~~~~~ 81 (92)
T cd03063 74 LDAGALEG 81 (92)
T ss_pred HHHHhhcC
Confidence 99998753
No 23
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=97.93 E-value=1.7e-05 Score=63.91 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=57.2
Q ss_pred eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcch
Q 015770 89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV 164 (400)
Q Consensus 89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar----~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dV 164 (400)
+||.||... .|...++..+.+.|.+.+... ..+....+..+.|+|.|+.+|.++| ++.||..++++++
T Consensus 2 ~~i~vC~~~------~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v--~~~~~~~~~~e~i 73 (80)
T cd03081 2 HVLKLCRAE------ACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMI--DGEVHGRVDPEKF 73 (80)
T ss_pred eEEEEcCCh------HHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEE--CCEEECCCCHHHH
Confidence 568889743 455556677888888888633 2233455677899999999999987 9999999999999
Q ss_pred hHHHHH
Q 015770 165 DSFVDD 170 (400)
Q Consensus 165 d~~Vee 170 (400)
++|+++
T Consensus 74 ~~il~~ 79 (80)
T cd03081 74 DALLAE 79 (80)
T ss_pred HHHHHc
Confidence 999864
No 24
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=97.81 E-value=3.5e-05 Score=68.83 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=61.1
Q ss_pred CCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHh----ccCCCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 015770 82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKT----RKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE 157 (400)
Q Consensus 82 GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLka----r~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~ 157 (400)
-+.+..++||+||... .|...++..+.+.|.+.+.- ...+....+..+.|+|.|..+|.|+| ++.||.
T Consensus 59 ~~~p~gk~~I~VC~g~------~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~~~~ClG~C~~aP~v~V--~~~~y~ 130 (145)
T PF01257_consen 59 RLEPKGKHHIRVCTGT------SCHLRGAEELLEALEEELGIKPGETTEDGKFTLEETGCLGACDQAPVVMV--DGEWYG 130 (145)
T ss_dssp -SSS--SEEEEEE-SH------HHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEEEESSSSSGGGSSEEEE--CCCEEE
T ss_pred ccCCCCCcEEEeCCCc------hHHhCCCHHHHHHHHHHhCCcccccCCCceEEEEECCCccccCCCCEEEE--CCEEEC
Confidence 3455567899999743 56666677788888888852 22344456677899999999999999 788999
Q ss_pred cCCCcchhHHHHHH
Q 015770 158 GLKESDVDSFVDDV 171 (400)
Q Consensus 158 ~vt~~dVd~~Vee~ 171 (400)
.++++++++|++++
T Consensus 131 ~vt~e~v~~il~~l 144 (145)
T PF01257_consen 131 NVTPEKVDEILEEL 144 (145)
T ss_dssp SSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc
Confidence 99999999999863
No 25
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=97.77 E-value=3.3e-05 Score=71.75 Aligned_cols=86 Identities=17% Similarity=0.324 Sum_probs=69.5
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHh-CC---CCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDS-RG---LKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~-~g---L~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w 259 (400)
+..++||.||+.. -|...| ..+.+++++.+.- .| -+....|.++.|+ |.|+.+|+|-+. ..+
T Consensus 110 p~gKy~v~VC~tt----pC~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eCl-GaCvnaPmi~IN--------D~y 176 (233)
T KOG3196|consen 110 PVGKYHVQVCTTT----PCMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECL-GACVNAPMIAIN--------DDY 176 (233)
T ss_pred CCCCceEEEecCc----HHhhhccHHHHHHHHHHhCccccccccccceeeecchhh-hhhccCceeeec--------chh
Confidence 4467899999986 899887 6888888887752 12 1235789999999 899999999997 459
Q ss_pred EeccCCCCHHHHHHHHHHCCccccc
Q 015770 260 YGYVTPDDVPAILDQHIAKGEIIER 284 (400)
Q Consensus 260 Yg~Vtp~dv~~Iv~~hl~~G~iv~~ 284 (400)
|+.+|++++.+|++. |.+|+....
T Consensus 177 yedlt~k~l~eIle~-L~~~k~pp~ 200 (233)
T KOG3196|consen 177 YEDLTPKKLVEILED-LKAGKKPPA 200 (233)
T ss_pred hccCCHHHHHHHHHH-HhcCCCCCC
Confidence 999999999999987 788876544
No 26
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=97.62 E-value=9.2e-05 Score=66.86 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=61.2
Q ss_pred CCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHH-hccC---CCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 015770 82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALK-TRKD---DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE 157 (400)
Q Consensus 82 GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLk-ar~~---~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~ 157 (400)
-+.+..++||+||... .|...++..+.+.|.+.+. ..+. +....+.-+.|+|.|+.+|.|+|.+ .||.
T Consensus 68 ~~~p~gk~~I~VC~g~------~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gPvv~V~~--~~y~ 139 (154)
T PRK07539 68 FRQPVGRHVIQVCTST------PCWLRGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAPVVMIND--DTYE 139 (154)
T ss_pred CcCCCCCEEEEEcCCc------hHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCCEEEECC--EEeC
Confidence 3455567889999743 4666667778888888876 3321 2234556689999999999999985 5999
Q ss_pred cCCCcchhHHHHH
Q 015770 158 GLKESDVDSFVDD 170 (400)
Q Consensus 158 ~vt~~dVd~~Vee 170 (400)
+++++++++|+++
T Consensus 140 ~vt~e~v~~il~~ 152 (154)
T PRK07539 140 DLTPEKIDELLDE 152 (154)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999875
No 27
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=97.57 E-value=0.00012 Score=65.64 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=61.1
Q ss_pred CCcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEec
Q 015770 82 GTVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYE 157 (400)
Q Consensus 82 GTa~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~ 157 (400)
-+.|..+.||+||... .|...++..+.+.|.+.|..... +....+..+.|+|.|+.+|.|+|.+ .+|.
T Consensus 62 ~~~p~gk~~I~VC~g~------~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~aP~v~V~~--~~y~ 133 (148)
T TIGR01958 62 DTEPVGRYHLQVCTNV------PCALRGSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNAPVMMIND--DYYE 133 (148)
T ss_pred CcCCCCCEEEEEcCCc------hhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCCCEEEECC--EEeC
Confidence 3445557889999743 45555667788888888864422 3334556689999999999999985 5999
Q ss_pred cCCCcchhHHHHH
Q 015770 158 GLKESDVDSFVDD 170 (400)
Q Consensus 158 ~vt~~dVd~~Vee 170 (400)
.++++++++|+++
T Consensus 134 ~vt~e~v~~il~~ 146 (148)
T TIGR01958 134 FLTPEKLDELLER 146 (148)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999875
No 28
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=97.51 E-value=0.00016 Score=58.14 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=55.8
Q ss_pred eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcch
Q 015770 89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV 164 (400)
Q Consensus 89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dV 164 (400)
+||.||... .|...++..+.++|.+++..+.. +....+.-+.|+|.|..+|.+.| +.++|..++++++
T Consensus 2 ~~i~vC~~~------~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V--~~~~y~~v~~~~v 73 (80)
T cd03083 2 YRIYLSDSI------TDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLI--NNRVFTRLTPGRI 73 (80)
T ss_pred EEEEEcCCh------HHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEE--CCEEECCCCHHHH
Confidence 568888643 34444667788888888865542 22344566899999999999999 6789999999999
Q ss_pred hHHHHH
Q 015770 165 DSFVDD 170 (400)
Q Consensus 165 d~~Vee 170 (400)
++|++.
T Consensus 74 ~~iv~~ 79 (80)
T cd03083 74 DQIAEL 79 (80)
T ss_pred HHHHhc
Confidence 999864
No 29
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=97.43 E-value=0.00065 Score=58.80 Aligned_cols=79 Identities=24% Similarity=0.419 Sum_probs=59.7
Q ss_pred EEEccCCCCC---CCcccc-cHHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEc-CCCCCCccceEEeccCC
Q 015770 191 VFVCSHGSRD---KRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYS-PDSEGKIMGHWYGYVTP 265 (400)
Q Consensus 191 IlVCth~~RD---~rCg~~-G~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~-p~~~~~~~g~wYg~Vtp 265 (400)
|+||+-=++. ..-+.. |..|+++|++.+...++.++|.|..+.||.+ |..|-.|-+. |++ ..+.||.++|
T Consensus 1 l~VC~tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~-C~r~CtVA~~~~gK----~tYlfGdl~p 75 (116)
T PF07845_consen 1 LFVCTTCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSA-CDRPCTVALQAPGK----WTYLFGDLDP 75 (116)
T ss_pred CEEeCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhc-CCCceEEEEEcCCC----cEEEEecCCc
Confidence 6899853322 012222 6899999999999988888899999999955 5567777766 332 4688999999
Q ss_pred -CCHHHHHHH
Q 015770 266 -DDVPAILDQ 274 (400)
Q Consensus 266 -~dv~~Iv~~ 274 (400)
++++.||+-
T Consensus 76 ~~~a~~il~~ 85 (116)
T PF07845_consen 76 DEDAEDILAF 85 (116)
T ss_pred ccCHHHHHHH
Confidence 889999974
No 30
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=97.04 E-value=0.0026 Score=60.45 Aligned_cols=90 Identities=24% Similarity=0.388 Sum_probs=63.3
Q ss_pred cCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe----cCcEEeccCCC
Q 015770 86 PYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF----PEMIKYEGLKE 161 (400)
Q Consensus 86 ~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVf----Pd~iwY~~vt~ 161 (400)
..+.+||||+-+.. -.+|... +..|.+.|.+.+..++... ..+-.+.-.|.+.-.+.|++| |+++||.++++
T Consensus 130 ~~~~~iLVCtHg~R--D~rCg~~-Gp~l~~~l~~~~~~~~l~~-~~V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGrv~p 205 (230)
T PF06999_consen 130 PDKPLILVCTHGKR--DKRCGIL-GPPLARELEKELRERGLSR-DRVWEISHIGGHKFAGNVIIYSKPKPDGIWYGRVTP 205 (230)
T ss_pred CCCCEEEEcCCCCc--CCchhcc-cHHHHHHHHHHhhhcCCcc-ceEEEecccccceecCeEEEEecCCCcEEEEEeeCH
Confidence 46788999975432 1255442 3556677777776665432 124444445666668999999 99999999999
Q ss_pred cchhHHHHHHhhCCCCCC
Q 015770 162 SDVDSFVDDVLVNGKPWA 179 (400)
Q Consensus 162 ~dVd~~Vee~L~~G~~~l 179 (400)
++++.||+..+.+|+.+.
T Consensus 206 ~~v~~iv~~t~~~g~vi~ 223 (230)
T PF06999_consen 206 EDVEGIVDATILDGKVIP 223 (230)
T ss_pred HHHHHHHHHHHhCCcCcC
Confidence 999999999788877653
No 31
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=96.85 E-value=0.0011 Score=52.51 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=52.0
Q ss_pred eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcchhHHH
Q 015770 89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDVDSFV 168 (400)
Q Consensus 89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dVd~~V 168 (400)
++|.||... .|...++..+.+.|.+.+... ...+.-+.|+|.|+.+|.++|+.+ .|.+++++++++++
T Consensus 2 ~~I~vC~~~------~C~~~Ga~~l~~~l~~~L~~~----~v~l~~~~ClG~C~~gP~v~V~~~--~~~~~t~~~i~~~~ 69 (72)
T cd03082 2 LTVRVCDSL------SCAMAGAEELLAALEAGLGPE----GVRVVRAPCVGRCERAPAALVGQR--PVDGATPAAVAAAV 69 (72)
T ss_pred eEEEEcCCh------HHHHCCHHHHHHHHHHHhCCC----eEEEEecCcCCccCCCCeEEECCE--EeCCcCHHHHHHHH
Confidence 568899743 445455666777777776432 355667899999999999999876 68889999998886
Q ss_pred H
Q 015770 169 D 169 (400)
Q Consensus 169 e 169 (400)
+
T Consensus 70 ~ 70 (72)
T cd03082 70 E 70 (72)
T ss_pred h
Confidence 5
No 32
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=96.40 E-value=0.0094 Score=54.12 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=59.3
Q ss_pred CcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEecc
Q 015770 83 TVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEG 158 (400)
Q Consensus 83 Ta~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar----~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~ 158 (400)
+-+..++||.||... .|...++..+.+.|.+.|.-. ..+....+..+.|+|.|+.+|.++| +...|.+
T Consensus 70 ~~p~Gk~~I~VC~~~------~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP~~~i--n~~~~~~ 141 (156)
T PRK05988 70 THPPGRHVLKLCRAE------ACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSPAAML--DGEVHGR 141 (156)
T ss_pred CCCCCCEEEEEeCCc------hhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEE--CCEEeCC
Confidence 345567778899743 455556777888888877533 2232334555899999999998888 6778999
Q ss_pred CCCcchhHHHHHH
Q 015770 159 LKESDVDSFVDDV 171 (400)
Q Consensus 159 vt~~dVd~~Vee~ 171 (400)
+++++++++++++
T Consensus 142 lt~~~~~~il~~~ 154 (156)
T PRK05988 142 LDPQRLDALLAEA 154 (156)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998764
No 33
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=96.20 E-value=0.012 Score=54.09 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=59.2
Q ss_pred CcccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhc----cCCCCceeeeeccCCCCCCCCeEEEecCcEEecc
Q 015770 83 TVNPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTR----KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEG 158 (400)
Q Consensus 83 Ta~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar----~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~ 158 (400)
+.+..+++|.||..- .|...++..+.+.|.+.|.-. ..+....+....|+|.|+.+|.++| ++..|.+
T Consensus 83 ~~P~Gk~~I~VC~g~------aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C~~AP~~~V--n~~~~~~ 154 (169)
T PRK07571 83 LKPSGEHTCVVCTGT------ACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGACGIAPAVVF--DGKVAGK 154 (169)
T ss_pred cCCCCCEEEEEcCCh------HHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCccCCCCeEEE--CCEEeCC
Confidence 344556778888643 455556777888888777532 2233344566899999999999988 6668999
Q ss_pred CCCcchhHHHHHH
Q 015770 159 LKESDVDSFVDDV 171 (400)
Q Consensus 159 vt~~dVd~~Vee~ 171 (400)
++++++++|++++
T Consensus 155 lt~e~v~~il~~~ 167 (169)
T PRK07571 155 QTPESVLEKVQGW 167 (169)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999875
No 34
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=96.02 E-value=0.024 Score=50.19 Aligned_cols=85 Identities=18% Similarity=0.358 Sum_probs=62.3
Q ss_pred CCCcEEEEccCCCCCCC----cccc-cHHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEE
Q 015770 186 LTGSYVFVCSHGSRDKR----CGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWY 260 (400)
Q Consensus 186 ~~~~~IlVCth~~RD~r----Cg~~-G~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wY 260 (400)
..++.+|||..=+++.- =+-. |..|.+.|.+...+-.+.....|..++|| .-|..|-+|.+..+++ ..+-|
T Consensus 15 ~~~htlfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl-~~C~r~c~vA~~~~~k---~sYLF 90 (143)
T COG5469 15 MPKHTLFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECL-AACNRGCVVAFSGPGK---PSYLF 90 (143)
T ss_pred cCceEEEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhh-hhcCCCeEEEEecCCC---ceEEE
Confidence 35688999995332211 1112 56889999887777677667889999999 6788999998874421 35889
Q ss_pred eccCCCC-HHHHHHH
Q 015770 261 GYVTPDD-VPAILDQ 274 (400)
Q Consensus 261 g~Vtp~d-v~~Iv~~ 274 (400)
|.++|+| +..||+-
T Consensus 91 gdL~p~d~a~dLl~~ 105 (143)
T COG5469 91 GDLTPDDSASDLLEF 105 (143)
T ss_pred ccCCccccHHHHHHH
Confidence 9999999 8888874
No 35
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=94.79 E-value=0.054 Score=49.46 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=56.3
Q ss_pred CceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHh----ccCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCc
Q 015770 87 YGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKT----RKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKES 162 (400)
Q Consensus 87 Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLka----r~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~ 162 (400)
-++||-||.+- .|...+++.+.+.|.+.++- -..+.+..+.-+.|+|.|+.+|.|.|.=+ .|.+++++
T Consensus 76 Gr~~i~VC~~t------~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~v~ClGaC~~AP~vmind~--~~~~lt~e 147 (160)
T COG1905 76 GRHHIRVCTGT------ACHLKGSEALLKALEKKLGIKPGETTADGKFTLEPVECLGACGQAPVVMINDD--VYGRLTPE 147 (160)
T ss_pred CCeEEEEeCCc------HHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEeeeeeecccccCCEEEECCc--hhccCCHH
Confidence 36789999753 34555677788888877762 22233334444799999999999988654 57779999
Q ss_pred chhHHHHHHh
Q 015770 163 DVDSFVDDVL 172 (400)
Q Consensus 163 dVd~~Vee~L 172 (400)
.+++|++.+.
T Consensus 148 ~l~eil~~~~ 157 (160)
T COG1905 148 KLEEILEKLK 157 (160)
T ss_pred HHHHHHHHHh
Confidence 9999998754
No 36
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=94.24 E-value=0.13 Score=53.39 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=57.9
Q ss_pred eEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcch
Q 015770 89 RHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESDV 164 (400)
Q Consensus 89 rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~dV 164 (400)
+||.||..- .|...+++.|.+.|.+.|.-... +....+....|+|.|..+|.++|- ...|..++.+++
T Consensus 91 ~~I~VC~~t------~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veCLGaC~~APv~~In--d~~y~~LTpe~v 162 (400)
T PRK12373 91 AHIQVCGTT------PCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVECLGACVNAPMVQIG--KDYYEDLTPERL 162 (400)
T ss_pred eEEEEcCCh------HHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCCeEEEC--CEEeCCCCHHHH
Confidence 689999743 45555677788888877754322 222334557899999999999984 447999999999
Q ss_pred hHHHHHHhhCCCC
Q 015770 165 DSFVDDVLVNGKP 177 (400)
Q Consensus 165 d~~Vee~L~~G~~ 177 (400)
++|++++ ..|++
T Consensus 163 ~~IL~~l-~ag~~ 174 (400)
T PRK12373 163 EEIIDAF-AAGKG 174 (400)
T ss_pred HHHHHHH-hCCCC
Confidence 9999875 45544
No 37
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=93.02 E-value=0.36 Score=41.88 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=53.4
Q ss_pred EEEEeeCCCCccc-ccccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEecCcEE---eccCCC-cchh
Q 015770 91 VFLCFKGPEMWVA-RVEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIFPEMIK---YEGLKE-SDVD 165 (400)
Q Consensus 91 VfVc~e~p~~Wps-~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVfPd~iw---Y~~vt~-~dVd 165 (400)
||||++....|.. .-+...+..|.+.|.+++........+.++-..|+..|..+..|-+-=.++| |..+++ ++++
T Consensus 1 l~VC~tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~C~r~CtVA~~~~gK~tYlfGdl~p~~~a~ 80 (116)
T PF07845_consen 1 LFVCTTCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSACDRPCTVALQAPGKWTYLFGDLDPDEDAE 80 (116)
T ss_pred CEEeCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhcCCCceEEEEEcCCCcEEEEecCCcccCHH
Confidence 5899986655432 1122223345555555555444444567777899999998777766633334 556766 6777
Q ss_pred HHH---HHHhhCCCCCCC
Q 015770 166 SFV---DDVLVNGKPWAS 180 (400)
Q Consensus 166 ~~V---ee~L~~G~~~l~ 180 (400)
+|+ +.|.....-|.|
T Consensus 81 ~il~~a~~Y~~s~dG~vp 98 (116)
T PF07845_consen 81 DILAFAALYAASPDGLVP 98 (116)
T ss_pred HHHHHHHHHHhCCCCccc
Confidence 776 455555444444
No 38
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=78.73 E-value=8.9 Score=34.26 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=49.4
Q ss_pred EEEEeeCCCCcccc--cccccCCcHHHHHHHHHHhccCCCCceeeeeccCCCCCCCCeEEEe-cCcE--EeccCCCcc-h
Q 015770 91 VFLCFKGPEMWVAR--VEASDTDTLPKLLASALKTRKDDMTVKSLMTVCGGGEGTDGDVLIF-PEMI--KYEGLKESD-V 164 (400)
Q Consensus 91 VfVc~e~p~~Wps~--~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic~g~cg~gp~VLVf-Pd~i--wY~~vt~~d-V 164 (400)
+|||......|... ....++..|.+.|.+.-.+........++-.-|+..|..+.+|.+- |+.- .|..++++| .
T Consensus 20 lfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~sYLFgdL~p~d~a 99 (143)
T COG5469 20 LFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGKPSYLFGDLTPDDSA 99 (143)
T ss_pred EEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCCceEEEccCCccccH
Confidence 89998877777543 2222333344444433333322223345667888888865443332 5553 245666665 4
Q ss_pred hHHH---HHHhhCCCCCCCC--CCCCC
Q 015770 165 DSFV---DDVLVNGKPWASG--VQEGL 186 (400)
Q Consensus 165 d~~V---ee~L~~G~~~l~g--~~e~~ 186 (400)
.+++ +.|..+.+-|.|. .||.+
T Consensus 100 ~dLl~~a~ly~~~~dG~~pw~~rPe~L 126 (143)
T COG5469 100 SDLLEFAQLYANSADGLVPWRKRPEPL 126 (143)
T ss_pred HHHHHHHHHhhhcccCccccccCChhH
Confidence 4444 4555444444432 35544
No 39
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=77.66 E-value=4.1 Score=38.53 Aligned_cols=83 Identities=19% Similarity=0.185 Sum_probs=50.9
Q ss_pred ccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCc----eeeeeccCCCCCCCCeEEEecCcEEeccCC
Q 015770 85 NPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTV----KSLMTVCGGGEGTDGDVLIFPEMIKYEGLK 160 (400)
Q Consensus 85 ~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~v----r~~ltic~g~cg~gp~VLVfPd~iwY~~vt 160 (400)
+.-+.||-||+. ||= ...+++.+.+.....+.-...+... .+.-..|+|.|-.+|.+-|--+ .|..++
T Consensus 110 p~gKy~v~VC~t----tpC--~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvnaPmi~IND~--yyedlt 181 (233)
T KOG3196|consen 110 PVGKYHVQVCTT----TPC--MLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECLGACVNAPMIAINDD--YYEDLT 181 (233)
T ss_pred CCCCceEEEecC----cHH--hhhccHHHHHHHHHHhCccccccccccceeeecchhhhhhccCceeeecch--hhccCC
Confidence 344678999974 442 2223444555444444322111111 2233689999998888877554 688899
Q ss_pred CcchhHHHHHHhhCCC
Q 015770 161 ESDVDSFVDDVLVNGK 176 (400)
Q Consensus 161 ~~dVd~~Vee~L~~G~ 176 (400)
+.++.+|+++ |..++
T Consensus 182 ~k~l~eIle~-L~~~k 196 (233)
T KOG3196|consen 182 PKKLVEILED-LKAGK 196 (233)
T ss_pred HHHHHHHHHH-HhcCC
Confidence 9999999986 55544
No 40
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=76.81 E-value=3.3 Score=29.48 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.1
Q ss_pred cchhhH-HHHHHHHHHHHHHHhhhhhhcc
Q 015770 372 EQRDVL-TAAAVVGAVATIAVAYSIYRRS 399 (400)
Q Consensus 372 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 399 (400)
.|+|.| .|.++++||.++++++-|.++.
T Consensus 10 ~RRdFL~~at~~~gavG~~~~a~Pfv~s~ 38 (41)
T PF10399_consen 10 TRRDFLTIATSAVGAVGAAAAAWPFVSSM 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578888 8889999999999999988764
No 41
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=61.55 E-value=34 Score=27.70 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=40.2
Q ss_pred CcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCC--CcccCccEEEEcCCCCCCccceEEeccC
Q 015770 188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIG--GHKYAGNLIVYSPDSEGKIMGHWYGYVT 264 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciG--Ghc~AGpvIv~~p~~~~~~~g~wYg~Vt 264 (400)
++.|=+|.+. ...| ..+++.|++ +.++.|.+.+|+| |.|...|-.+|. |.+-.--|
T Consensus 2 ~piVefC~~N------l~~g~~~~~~~Le~-------~p~~~Vie~gCl~~Cg~C~~~pFAlVn--------G~~V~A~t 60 (78)
T PF07293_consen 2 NPIVEFCVSN------LASGTDQVYEKLEK-------DPDIDVIEYGCLSYCGPCAKKPFALVN--------GEIVAAET 60 (78)
T ss_pred CceEEEcccC------chhhhHHHHHHHhc-------CCCccEEEcChhhhCcCCCCCccEEEC--------CEEEecCC
Confidence 3567788874 2344 457777653 1347888888884 556677777775 55444444
Q ss_pred CCCHHHHHHHHHH
Q 015770 265 PDDVPAILDQHIA 277 (400)
Q Consensus 265 p~dv~~Iv~~hl~ 277 (400)
++++-+-|.++|.
T Consensus 61 ~eeL~~kI~~~i~ 73 (78)
T PF07293_consen 61 AEELLEKIKEKIE 73 (78)
T ss_pred HHHHHHHHHHHHh
Confidence 4444333334443
No 42
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=39.95 E-value=22 Score=32.46 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=16.9
Q ss_pred CCcceeccCcCcccccCCCCeeEecC
Q 015770 319 GNTQVTKENVTGGCCQGASGFSCCKD 344 (400)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (400)
+..|.|.+....-||--.+.-+||.+
T Consensus 16 ~~~F~C~~~~~~~CCG~C~~ryCC~~ 41 (179)
T PF13908_consen 16 DPGFNCPEGDFTFCCGTCSLRYCCSD 41 (179)
T ss_pred ccCCcCCCcCcceecCCccCcchhhh
Confidence 34455554443457777777899998
No 43
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=39.64 E-value=32 Score=27.15 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc
Q 015770 378 TAAAVVGAVATIAVAYSIYRRS 399 (400)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~ 399 (400)
..+.++|.|+.+++-|.+|.|-
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4678899999999999999873
No 44
>PRK13669 hypothetical protein; Provisional
Probab=35.63 E-value=1.3e+02 Score=24.43 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=30.2
Q ss_pred CcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCCCCcEEEEeecCCC--CcccCccEEEEc
Q 015770 188 GSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGLKDQIFVKPCSHIG--GHKYAGNLIVYS 248 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL~~~V~V~~tsciG--Ghc~AGpvIv~~ 248 (400)
++.|=+|.+. ...| ..+++.|++ +.++.|.+.+|++ |.|..+|-.+|.
T Consensus 2 ~piVEfC~sN------l~~G~~~~~~~Le~-------dP~~dVie~gCls~CG~C~~~~FAlVn 52 (78)
T PRK13669 2 NPIVEFCVSN------LASGSQAAFEKLEK-------DPNLDVLEYGCLGYCGICSEGLFALVN 52 (78)
T ss_pred Cceeeehhcc------hhhhHHHHHHHHHh-------CCCceEEEcchhhhCcCcccCceEEEC
Confidence 3567788875 2234 344555532 2357888988884 567777777775
No 45
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.04 E-value=89 Score=25.78 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=26.8
Q ss_pred cccHHHHHHHHHHHHhCCCCCcEEEEeec--CCCCcccCccEEEEcCC
Q 015770 205 VCGPALIEKFNAEIDSRGLKDQIFVKPCS--HIGGHKYAGNLIVYSPD 250 (400)
Q Consensus 205 ~~G~~l~~aL~~~l~~~gL~~~V~V~~ts--ciGGhc~AGpvIv~~p~ 250 (400)
..-..+.+.+++.++++|++ +.|..++ -+...-..-.+|++.|+
T Consensus 14 ~sSS~l~~k~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~pq 59 (95)
T TIGR00853 14 MSTSLLVNKMNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAPQ 59 (95)
T ss_pred hhHHHHHHHHHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECch
Confidence 33346889999999999996 5555544 22111122356777665
No 46
>PF12669 P12: Virus attachment protein p12 family
Probab=29.53 E-value=46 Score=25.26 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=6.5
Q ss_pred HHh-hhhhhcc
Q 015770 390 AVA-YSIYRRS 399 (400)
Q Consensus 390 ~~~-~~~~~~~ 399 (400)
+|+ +++||+.
T Consensus 14 ~v~~r~~~k~~ 24 (58)
T PF12669_consen 14 YVAIRKFIKDK 24 (58)
T ss_pred HHHHHHHHHHh
Confidence 444 7888763
No 47
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.46 E-value=1.3e+02 Score=25.27 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHHHHhCCCCCcEEEEeec
Q 015770 205 VCGPALIEKFNAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 205 ~~G~~l~~aL~~~l~~~gL~~~V~V~~ts 233 (400)
..-.-+.+.+++.++++|++ +.|..++
T Consensus 11 aSSs~la~km~~~a~~~gi~--~~i~a~~ 37 (99)
T cd05565 11 GTSGLLANALNKGAKERGVP--LEAAAGA 37 (99)
T ss_pred CCHHHHHHHHHHHHHHCCCc--EEEEEee
Confidence 33468899999999999996 5555543
No 48
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=26.41 E-value=87 Score=25.74 Aligned_cols=44 Identities=11% Similarity=0.328 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHHHHhCCCCCcEEEEeec--CCCCcccCccEEEEcCC
Q 015770 205 VCGPALIEKFNAEIDSRGLKDQIFVKPCS--HIGGHKYAGNLIVYSPD 250 (400)
Q Consensus 205 ~~G~~l~~aL~~~l~~~gL~~~V~V~~ts--ciGGhc~AGpvIv~~p~ 250 (400)
..-.-+.+.+++.++++|++ +.|..++ -+...-..-.+|++.|+
T Consensus 10 ~sTS~~~~ki~~~~~~~~~~--~~v~~~~~~~~~~~~~~~Diil~~Pq 55 (96)
T cd05564 10 MSTSILVKKMKKAAEKRGID--AEIEAVPESELEEYIDDADVVLLGPQ 55 (96)
T ss_pred chHHHHHHHHHHHHHHCCCc--eEEEEecHHHHHHhcCCCCEEEEChh
Confidence 44346888999999999996 5555544 22111122356666665
No 49
>PHA03049 IMV membrane protein; Provisional
Probab=25.13 E-value=78 Score=24.94 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc
Q 015770 378 TAAAVVGAVATIAVAYSIYRRS 399 (400)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~ 399 (400)
+.+-++|.|+.+++-|.+|+|-
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk 26 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999874
No 50
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=25.06 E-value=2.1e+02 Score=30.65 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=27.8
Q ss_pred CcEEEEccCCCCCCCccccc---HHHHHHHHHHHH-hCCCCCcEEEEeecCC
Q 015770 188 GSYVFVCSHGSRDKRCGVCG---PALIEKFNAEID-SRGLKDQIFVKPCSHI 235 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G---~~l~~aL~~~l~-~~gL~~~V~V~~tsci 235 (400)
...+.-|++. ..|...- .++..+|.++|. ..+++..++|.-+||-
T Consensus 391 ~~~~vaC~G~---~~C~~a~~dT~~~a~~l~~~l~~~~~lp~~~kI~iSGCp 439 (513)
T PRK09566 391 ARGLVSCTGN---QYCNFALIETKNRALALAKELDAELDLPQPVRIHWTGCP 439 (513)
T ss_pred ccCceeCcCc---ccccccHhhHHHHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 3468889875 4676541 344445555554 3467777788778776
No 51
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=24.04 E-value=50 Score=31.08 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhhhhhc
Q 015770 382 VVGAVATIAVAYSIYRR 398 (400)
Q Consensus 382 ~~~~~~~~~~~~~~~~~ 398 (400)
++|..|.+++.|+|||.
T Consensus 170 ~LGv~aI~ff~~KF~ks 186 (186)
T PF05283_consen 170 TLGVLAIIFFLYKFCKS 186 (186)
T ss_pred HHHHHHHHHHHhhhccC
Confidence 45666788999999983
No 52
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=23.83 E-value=73 Score=24.89 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=16.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHh
Q 015770 371 FEQRDVLTAAAVVGAVATIAVA 392 (400)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~ 392 (400)
-.|+|.+.++++.+|++.++++
T Consensus 9 ~sRR~Flk~lg~~aaa~~aa~~ 30 (66)
T TIGR02811 9 PSRRDLLKGLGVGAAAGAVAAA 30 (66)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 4689999998887765555443
No 53
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=1.3e+02 Score=30.45 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=50.7
Q ss_pred CceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccCCCCceeeeecc--CCCCCCCCeEEEecCcEEeccCCCcch
Q 015770 87 YGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKDDMTVKSLMTVC--GGGEGTDGDVLIFPEMIKYEGLKESDV 164 (400)
Q Consensus 87 Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~~~~vr~~ltic--~g~cg~gp~VLVfPd~iwY~~vt~~dV 164 (400)
+.|-++||+-+ .--..|... +-++...+.+.+...... ++++=.| .|.+.-.|+++-+|.+..|..++.+.+
T Consensus 130 h~RdiLVCTHg--n~D~cCarf-G~P~Y~~~r~~~a~l~~~---~lRvWq~SHfgGHrFAPTlidlP~GqyyG~Ld~~~~ 203 (316)
T COG4759 130 HTRDILVCTHG--NVDVCCARF-GYPFYQQLRAQYADLNLE---NLRVWQSSHFGGHRFAPTLIDLPQGQYYGHLDPESL 203 (316)
T ss_pred hhceEEEecCC--Chhhhhhhc-CcHHHHHHHHhhhhcccc---ceEEEEecccCccccCchhhcCCCCceeeecCHHHH
Confidence 56778999743 233455553 356777777777666532 2333333 344445899999999999998888877
Q ss_pred hHHHH
Q 015770 165 DSFVD 169 (400)
Q Consensus 165 d~~Ve 169 (400)
+.|+.
T Consensus 204 ~~l~~ 208 (316)
T COG4759 204 DSLLT 208 (316)
T ss_pred HHHHh
Confidence 77764
No 54
>PF00819 Myotoxins: Myotoxin; InterPro: IPR000881 Myotoxins [, , ] are small basic peptides (42 to 45 residues) found in rattlesnake venom that cause severe muscle necrosis by a non-enzymatic mechanism. Myotoxins act extremely rapidly and serve two primary biological functions: limiting the flight of prey by causing instantaneous paralysis of the hind limbs and promoting rapid death by paralysis of the diaphragm. Myotoxins have a well-conserved structure containing six cysteines involved in three disulphide bridges.; GO: 0019871 sodium channel inhibitor activity, 0005576 extracellular region; PDB: 1H5O_A 1Z99_A.
Probab=22.48 E-value=21 Score=25.04 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=11.8
Q ss_pred CCCcccCccEEEEcCC
Q 015770 235 IGGHKYAGNLIVYSPD 250 (400)
Q Consensus 235 iGGhc~AGpvIv~~p~ 250 (400)
-|||||--.+|.++|.
T Consensus 7 kgghcfpk~~ic~pps 22 (43)
T PF00819_consen 7 KGGHCFPKEKICIPPS 22 (43)
T ss_dssp CTEEEEECCC--SSSS
T ss_pred cCCccCCcCceECCCc
Confidence 3799999999998875
No 55
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.06 E-value=1.5e+02 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.357 Sum_probs=22.6
Q ss_pred EEEccCCCCCCCcccc-cHHHHHHHHHHHHhCCCCCcEEEEee
Q 015770 191 VFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPC 232 (400)
Q Consensus 191 IlVCth~~RD~rCg~~-G~~l~~aL~~~l~~~gL~~~V~V~~t 232 (400)
++||++| .. +.-+...+++.++++|++ +.|..+
T Consensus 6 LvvCgsG-------~~TS~m~~~ki~~~l~~~gi~--~~v~~~ 39 (94)
T PRK10310 6 IVACGGA-------VATSTMAAEEIKELCQSHNIP--VELIQC 39 (94)
T ss_pred EEECCCc-------hhHHHHHHHHHHHHHHHCCCe--EEEEEe
Confidence 4566653 43 345679999999999996 556553
No 56
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=21.29 E-value=3e+02 Score=22.84 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=34.9
Q ss_pred EEEEccCCCCCCCcccc-cHHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCccEEEE
Q 015770 190 YVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAGNLIVY 247 (400)
Q Consensus 190 ~IlVCth~~RD~rCg~~-G~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AGpvIv~ 247 (400)
-++||++| .. .--+...+++.++++|++-.+.+..++=+++.....-+++-
T Consensus 4 IL~aCG~G-------vgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~ 55 (93)
T COG3414 4 ILAACGNG-------VGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVT 55 (93)
T ss_pred EEEECCCC-------ccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEE
Confidence 45677763 33 24788999999999999766666666666666655555543
No 57
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=21.22 E-value=2.1e+02 Score=24.13 Aligned_cols=52 Identities=15% Similarity=0.427 Sum_probs=30.0
Q ss_pred EEEEccCCCCCCCcccccHHHHHHHHHHHHhCCCCCcEEEEeecCC--CCcccCccEEEEcCC
Q 015770 190 YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCSHI--GGHKYAGNLIVYSPD 250 (400)
Q Consensus 190 ~IlVCth~~RD~rCg~~G~~l~~aL~~~l~~~gL~~~V~V~~tsci--GGhc~AGpvIv~~p~ 250 (400)
-++||..| ..-.-+.+.++++.++.|++ +.|...|.- -..-....+|++.|+
T Consensus 6 IllvC~~G-------~sTSll~~km~~~~~~~gi~--~~V~A~~~~~~~~~~~~~DviLl~Pq 59 (106)
T PRK10499 6 IYLFCSAG-------MSTSLLVSKMRAQAEKYEVP--VIIEAFPETLAGEKGQNADVVLLGPQ 59 (106)
T ss_pred EEEECCCC-------ccHHHHHHHHHHHHHHCCCC--EEEEEeecchhhccccCCCEEEECHH
Confidence 46666653 44356777999999998886 455442211 111223466666654
No 58
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=21.15 E-value=3.3e+02 Score=29.64 Aligned_cols=50 Identities=18% Similarity=0.376 Sum_probs=33.1
Q ss_pred CcEEEEccCCCCCCCccccc-------HHHHHHHHHHHHhCCC-CCcEEEEeecCCCCcccC
Q 015770 188 GSYVFVCSHGSRDKRCGVCG-------PALIEKFNAEIDSRGL-KDQIFVKPCSHIGGHKYA 241 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G-------~~l~~aL~~~l~~~gL-~~~V~V~~tsciGGhc~A 241 (400)
...+.-|++. ..|...- +.|.++|++.+...++ +..+.|.-+||- -.|-.
T Consensus 428 ~~~ivAC~G~---~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~~~~i~I~vSGCp-n~Ca~ 485 (569)
T PRK13504 428 RRNSMACVAL---PTCGLAMAEAERYLPSFIDRIEALLAKHGLSDEHIVIRMTGCP-NGCAR 485 (569)
T ss_pred eeceeecCCc---ccccchhhhHHHHHHHHHHHHHHHHhhcCCCCCceEEEEeCCc-ccccc
Confidence 4568889875 4686542 3466667777766777 667888888887 33433
No 59
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=20.89 E-value=2.2e+02 Score=29.05 Aligned_cols=82 Identities=11% Similarity=0.161 Sum_probs=49.4
Q ss_pred EEeccCCCcchhHHHHHHhhCCCCCCCCCCCCCCCcEEEEccCCCCCCCccccc---H----HHHHHHHHHHHhCCCCCc
Q 015770 154 IKYEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVCG---P----ALIEKFNAEIDSRGLKDQ 226 (400)
Q Consensus 154 iwY~~vt~~dVd~~Vee~L~~G~~~l~g~~e~~~~~~IlVCth~~RD~rCg~~G---~----~l~~aL~~~l~~~gL~~~ 226 (400)
+.+..++.++++.+.++....|-.. .+.. ...++.|.-|.+. ..|...+ . +|.+.|.+.+...+|+..
T Consensus 69 I~l~~I~~edl~~i~~~L~~~Gl~~-~~~G-~~vrrni~aC~G~---~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP~K 143 (341)
T TIGR02066 69 VEFLVSDESKIQPLIDELEEVGFPV-GGTG-DAVKGNIVHTQGW---LHCHIPAIDASGIVKAVMDELYEYFTDHKLPAM 143 (341)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCC-CCCC-CccccccccCcCC---CCCCcchhchHHHHHHHHHHHHHHHhccccccc
Confidence 4666789999999988754434322 1111 1122247778864 3564432 2 345566666666788888
Q ss_pred EEEEeecCCCCcccC
Q 015770 227 IFVKPCSHIGGHKYA 241 (400)
Q Consensus 227 V~V~~tsciGGhc~A 241 (400)
+.|.-+||- -.|-.
T Consensus 144 fKI~vSGC~-~~C~~ 157 (341)
T TIGR02066 144 VRISLSCCA-NMCGG 157 (341)
T ss_pred ceecccccc-ccccc
Confidence 888888887 44433
No 60
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=20.60 E-value=1.8e+02 Score=28.46 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEeecCCCCcccCc---cEEEEcCCCCCCccceEEeccCCCCHHHHHH---HHHHCCcc
Q 015770 208 PALIEKFNAEIDSRGLKDQIFVKPCSHIGGHKYAG---NLIVYSPDSEGKIMGHWYGYVTPDDVPAILD---QHIAKGEI 281 (400)
Q Consensus 208 ~~l~~aL~~~l~~~gL~~~V~V~~tsciGGhc~AG---pvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~---~hl~~G~i 281 (400)
..+.+.+++...+.|+..++.|..+..+-...-.| |.|++|.+ .....++++.+.|+. .|+.++..
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~i~~s~~i~sP~~~G~~~p~I~lP~~--------~~~~~~~~el~~il~HEl~Hikr~D~ 212 (299)
T PF05569_consen 141 EELQALLEECKEELGIKRPIRIRVSSGISSPFVFGFLRPVIVLPES--------LLEDLSEEELRAILLHELAHIKRRDL 212 (299)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEcCCCCCCeeecCcceEEEecCc--------cccccCHHHHHHHHHHHHHHHHCCCh
Confidence 35667777777788888889998888776666556 78888732 445788888887775 36777754
Q ss_pred cc
Q 015770 282 IE 283 (400)
Q Consensus 282 v~ 283 (400)
..
T Consensus 213 ~~ 214 (299)
T PF05569_consen 213 LW 214 (299)
T ss_pred HH
Confidence 43
No 61
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=20.27 E-value=8e+02 Score=25.08 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=62.1
Q ss_pred eccCCCcchhHHHHHHhhCCCCCCCCCCCCCCCcEEEEccCCCCCCCcccc---cHHHHHHHHHHHHhCCCCCcEEEEee
Q 015770 156 YEGLKESDVDSFVDDVLVNGKPWASGVQEGLTGSYVFVCSHGSRDKRCGVC---GPALIEKFNAEIDSRGLKDQIFVKPC 232 (400)
Q Consensus 156 Y~~vt~~dVd~~Vee~L~~G~~~l~g~~e~~~~~~IlVCth~~RD~rCg~~---G~~l~~aL~~~l~~~gL~~~V~V~~t 232 (400)
+..++.+++++++++.-.-|. ..|...+ .-..|.-|++. .-|... ...|.++|.+++.+..++-.+.|.-+
T Consensus 72 i~~i~~e~~~~v~~~L~~iG~--~~G~~G~-~vr~i~aC~G~---~~C~~a~~Dt~~la~~l~e~f~~~~~P~KfKI~vs 145 (317)
T COG2221 72 IPGISPEDADDVVEELREIGL--PVGSTGP-AVRAIVACPGP---RTCETALYDTTELARRLEEEFLEVPVPYKFKIAVS 145 (317)
T ss_pred eccCCHHHHHHHHHHHHHcCC--CCCCcch-hhhhhhcCcCc---ccccccccChHHHHHHHHHHhhcCCCCceEEEEee
Confidence 345788899999876433222 2232212 12367788874 357665 36899999999998888888999999
Q ss_pred cCCCCcccCccEEEEcCCCCCCccceEEeccCCC
Q 015770 233 SHIGGHKYAGNLIVYSPDSEGKIMGHWYGYVTPD 266 (400)
Q Consensus 233 sciGGhc~AGpvIv~~p~~~~~~~g~wYg~Vtp~ 266 (400)
||= -.|-.+-+-.+- .-|+|.=.+++|
T Consensus 146 GCP-n~C~r~~~~Dig------ivGv~~P~~~~E 172 (317)
T COG2221 146 GCP-NDCTRPQAHDIG------IVGVWKPKVDEE 172 (317)
T ss_pred cCC-ccccccccccee------EEEeecCccCHH
Confidence 987 666555544432 126777333333
Done!