Query 015770
Match_columns 400
No_of_seqs 284 out of 1508
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:22:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m2d_A [2Fe-2S] ferredoxin; th 99.7 1.4E-17 4.6E-22 140.4 7.3 96 187-289 2-103 (110)
2 2auv_A Potential NAD-reducing 99.4 9.1E-14 3.1E-18 111.5 1.3 78 185-275 3-85 (85)
3 3i9v_2 NADH-quinone oxidoreduc 99.2 5.8E-12 2E-16 115.2 5.3 89 185-287 74-168 (181)
4 1m2d_A [2Fe-2S] ferredoxin; th 99.1 6.2E-11 2.1E-15 99.5 6.8 91 87-177 2-95 (110)
5 2auv_A Potential NAD-reducing 98.4 7.9E-08 2.7E-12 76.7 2.0 79 85-171 3-85 (85)
6 3i9v_2 NADH-quinone oxidoreduc 97.9 1E-05 3.5E-10 73.7 4.7 84 85-177 74-162 (181)
7 4etm_A LMPTP, low molecular we 50.2 20 0.0007 31.5 5.2 39 188-233 19-58 (173)
8 1u2p_A Ptpase, low molecular w 41.4 37 0.0013 29.2 5.4 38 189-233 6-44 (163)
9 3jvi_A Protein tyrosine phosph 38.3 37 0.0013 29.3 4.9 38 189-233 6-44 (161)
10 2gi4_A Possible phosphotyrosin 38.3 37 0.0013 29.2 4.8 38 189-233 3-41 (156)
11 1d1q_A Tyrosine phosphatase (E 37.9 41 0.0014 28.9 5.1 39 188-233 8-48 (161)
12 3n8i_A Low molecular weight ph 36.1 43 0.0015 28.8 4.9 39 188-233 6-45 (157)
13 2cwd_A Low molecular weight ph 33.9 49 0.0017 28.4 4.9 38 189-233 6-44 (161)
14 3rof_A Low molecular weight pr 30.7 70 0.0024 27.6 5.4 38 188-233 7-45 (158)
15 1e2b_A Enzyme IIB-cellobiose; 28.2 91 0.0031 24.9 5.3 44 205-250 14-59 (106)
16 1tvm_A PTS system, galactitol- 27.7 1.4E+02 0.0049 23.8 6.5 53 189-250 23-78 (113)
17 3or5_A Thiol:disulfide interch 22.3 1.5E+02 0.0053 23.6 5.9 37 239-277 115-151 (165)
18 2l2q_A PTS system, cellobiose- 20.6 1.3E+02 0.0045 23.8 4.8 35 190-233 7-41 (109)
No 1
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.70 E-value=1.4e-17 Score=140.41 Aligned_cols=96 Identities=30% Similarity=0.575 Sum_probs=85.2
Q ss_pred CCcEEEEccCCCCC----CCccccc-HHHHHHHHHHHHhC-CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccceEE
Q 015770 187 TGSYVFVCSHGSRD----KRCGVCG-PALIEKFNAEIDSR-GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHWY 260 (400)
Q Consensus 187 ~~~~IlVCth~~RD----~rCg~~G-~~l~~aL~~~l~~~-gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~wY 260 (400)
.+++|+||++.++| .+|...| ..|+++|++++..+ |+.+.|.|..++|+ |.|..||+|+++|+ |+||
T Consensus 2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~Cl-G~C~~gP~v~V~P~------~~~y 74 (110)
T 1m2d_A 2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCM-NASMMGPVVVVYPD------GVWY 74 (110)
T ss_dssp -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCC-SCGGGCSCEEEETT------TEEE
T ss_pred CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCC-CccCCCCEEEEEeC------CEEE
Confidence 35799999998888 4899887 79999999999988 87777999999999 77888888888776 7999
Q ss_pred eccCCCCHHHHHHHHHHCCccccceeccC
Q 015770 261 GYVTPDDVPAILDQHIAKGEIIERLWRGQ 289 (400)
Q Consensus 261 g~Vtp~dv~~Iv~~hl~~G~iv~~l~rG~ 289 (400)
|+|||+++++||++|+.+|+++++|++..
T Consensus 75 ~~vt~e~v~~il~~~l~~g~~v~~l~~~~ 103 (110)
T 1m2d_A 75 GQVKPEDVDEIVEKHLKGGEPVERLVISK 103 (110)
T ss_dssp CSCCGGGHHHHHHHTTTTSCCCGGGEEEC
T ss_pred ecCCHHHHHHHHHHHHHCCcChHHhcccC
Confidence 99999999999999999999999987654
No 2
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=99.36 E-value=9.1e-14 Score=111.54 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhCCC----CCcEEEEeecCCCCcccCccEEEEcCCCCCCccceE
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSRGL----KDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGHW 259 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~gL----~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~w 259 (400)
+..+.+|+||++. +|...| ..|+++|+++|..+++ ++.+.|..++|+ |.|..||+|.+. |.|
T Consensus 3 p~g~~~I~VC~g~----~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~Cl-G~C~~~P~v~V~--------~~~ 69 (85)
T 2auv_A 3 PKGKYPISVCMGT----ACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCV-GGCALAPIVMVG--------EKV 69 (85)
T ss_dssp SCCSBCEECCCCH----HHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSS-SSCTTSCCCEEG--------GGC
T ss_pred CCCCEEEEECCCc----hHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCcc-CcCCCCCEEEEC--------CEE
Confidence 3456799999986 898887 7999999999998877 567999999999 899999999996 789
Q ss_pred EeccCCCCHHHHHHHH
Q 015770 260 YGYVTPDDVPAILDQH 275 (400)
Q Consensus 260 Yg~Vtp~dv~~Iv~~h 275 (400)
|++|+|+++++||++|
T Consensus 70 y~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 70 YGNVTPGQVKKILAEY 85 (85)
T ss_dssp CCCSSSSHHHHHHHHC
T ss_pred ECCCCHHHHHHHHHhC
Confidence 9999999999999874
No 3
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=99.23 E-value=5.8e-12 Score=115.15 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=77.5
Q ss_pred CCCCcEEEEccCCCCCCCccccc-HHHHHHHHHHHHhC----CCCCcEEEEeecCCCCcccCccEEEEcCCCCCCccce-
Q 015770 185 GLTGSYVFVCSHGSRDKRCGVCG-PALIEKFNAEIDSR----GLKDQIFVKPCSHIGGHKYAGNLIVYSPDSEGKIMGH- 258 (400)
Q Consensus 185 ~~~~~~IlVCth~~RD~rCg~~G-~~l~~aL~~~l~~~----gL~~~V~V~~tsciGGhc~AGpvIv~~p~~~~~~~g~- 258 (400)
+..+.+|+||++. +|...| ..|+++|+++|... ..++.+.+..++|+ |.|..||+|.+. +.
T Consensus 74 P~gk~~I~VC~gt----~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~Cl-G~C~~gPvv~V~--------~~~ 140 (181)
T 3i9v_2 74 PTGKYHLQVCATL----SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECL-GSCHTAPVIQVN--------DEP 140 (181)
T ss_dssp CCCSEEEEEECSH----HHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCC-SCGGGCSCEECS--------SSC
T ss_pred CCCCEEEEECCCc----hhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCC-CccCCCCEEEEC--------CEE
Confidence 4457899999986 898887 69999999999743 24667999999999 899999999984 56
Q ss_pred EEeccCCCCHHHHHHHHHHCCccccceec
Q 015770 259 WYGYVTPDDVPAILDQHIAKGEIIERLWR 287 (400)
Q Consensus 259 wYg~Vtp~dv~~Iv~~hl~~G~iv~~l~r 287 (400)
||++|||+++++||++ +.+|++++++..
T Consensus 141 ~y~~vt~e~v~~Il~~-l~~g~~ve~l~~ 168 (181)
T 3i9v_2 141 YVECVTRARLEALLAG-LRAGKRLEEIEL 168 (181)
T ss_dssp CBCCCCHHHHHHHHHH-HHTTCCGGGCCC
T ss_pred EEcCCCHHHHHHHHHH-HHcCCChhheec
Confidence 9999999999999998 899999998853
No 4
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=99.13 E-value=6.2e-11 Score=99.53 Aligned_cols=91 Identities=22% Similarity=0.311 Sum_probs=74.5
Q ss_pred CceEEEEEeeCC-CCccc-ccccccCCcHHHHHHHHHHhc-cCCCCceeeeeccCCCCCCCCeEEEecCcEEeccCCCcc
Q 015770 87 YGRHVFLCFKGP-EMWVA-RVEASDTDTLPKLLASALKTR-KDDMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLKESD 163 (400)
Q Consensus 87 Y~rHVfVc~e~p-~~Wps-~~e~~~s~~L~~~L~~aLkar-~~~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt~~d 163 (400)
|++||+||.... +.+|+ .|...++..|.+.|.++++.+ +....+.+..+.|+|.|..+|.|+|+|+++||..+++++
T Consensus 2 ~~~~I~VC~~~r~~~~~~~~C~~~Ga~~l~~~l~~~l~~~~g~~~~v~v~~~~ClG~C~~gP~v~V~P~~~~y~~vt~e~ 81 (110)
T 1m2d_A 2 EFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASMMGPVVVVYPDGVWYGQVKPED 81 (110)
T ss_dssp -CEEEEEECCCCCTTCTTCCTGGGTHHHHHHHHHHHHHHCHHHHTTEEEEEESCCSCGGGCSCEEEETTTEEECSCCGGG
T ss_pred CceEEEECCCCCCCCCCCCCchhcCHHHHHHHHHHHHHHhcCCCCeEEEEECCCCCccCCCCEEEEEeCCEEEecCCHHH
Confidence 678999998743 34443 677767778889999888877 433346677799999999999999999999999999999
Q ss_pred hhHHHHHHhhCCCC
Q 015770 164 VDSFVDDVLVNGKP 177 (400)
Q Consensus 164 Vd~~Vee~L~~G~~ 177 (400)
+++|+++|+.+|.+
T Consensus 82 v~~il~~~l~~g~~ 95 (110)
T 1m2d_A 82 VDEIVEKHLKGGEP 95 (110)
T ss_dssp HHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHCCcC
Confidence 99999999988765
No 5
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=98.40 E-value=7.9e-08 Score=76.69 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=62.8
Q ss_pred ccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhccC----CCCceeeeeccCCCCCCCCeEEEecCcEEeccCC
Q 015770 85 NPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRKD----DMTVKSLMTVCGGGEGTDGDVLIFPEMIKYEGLK 160 (400)
Q Consensus 85 ~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~~----~~~vr~~ltic~g~cg~gp~VLVfPd~iwY~~vt 160 (400)
|.+++||+||... .|...++..+.+.|.++++.+.. +..+.+.-+.|+|.|+.+|.|+|+ ++||..++
T Consensus 3 p~g~~~I~VC~g~------~C~~~Ga~~v~~~l~~~l~~~~~~tt~d~~v~l~~~~ClG~C~~~P~v~V~--~~~y~~vt 74 (85)
T 2auv_A 3 PKGKYPISVCMGT------ACFVKGADKVVHAFKEQLKIDIGDVTPDGRFSIDTLRCVGGCALAPIVMVG--EKVYGNVT 74 (85)
T ss_dssp SCCSBCEECCCCH------HHHTTTHHHHHHHHHHHHCCSSSSSSSSCCBCCBSSSSSSSCTTSCCCEEG--GGCCCCSS
T ss_pred CCCCEEEEECCCc------hHHHcCHHHHHHHHHHHhCcccCCcCCCCeEEEEECCccCcCCCCCEEEEC--CEEECCCC
Confidence 5567899999742 45555667788888888876654 334556678999999999999997 68999999
Q ss_pred CcchhHHHHHH
Q 015770 161 ESDVDSFVDDV 171 (400)
Q Consensus 161 ~~dVd~~Vee~ 171 (400)
++++++|+++|
T Consensus 75 ~e~v~~il~~~ 85 (85)
T 2auv_A 75 PGQVKKILAEY 85 (85)
T ss_dssp SSHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 6
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=97.86 E-value=1e-05 Score=73.75 Aligned_cols=84 Identities=15% Similarity=0.145 Sum_probs=65.4
Q ss_pred ccCceEEEEEeeCCCCcccccccccCCcHHHHHHHHHHhcc----CCCCceeeeeccCCCCCCCCeEEEecCcE-EeccC
Q 015770 85 NPYGRHVFLCFKGPEMWVARVEASDTDTLPKLLASALKTRK----DDMTVKSLMTVCGGGEGTDGDVLIFPEMI-KYEGL 159 (400)
Q Consensus 85 ~~Y~rHVfVc~e~p~~Wps~~e~~~s~~L~~~L~~aLkar~----~~~~vr~~ltic~g~cg~gp~VLVfPd~i-wY~~v 159 (400)
|..++||+||... .|...+++.+.+.|.+.|+... .+...++.-+.|+|.|+.+|.|.| ++. ||..+
T Consensus 74 P~gk~~I~VC~gt------~C~~~Ga~~i~~~l~~~L~i~~gett~Dg~~tl~~~~ClG~C~~gPvv~V--~~~~~y~~v 145 (181)
T 3i9v_2 74 PTGKYHLQVCATL------SCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQV--NDEPYVECV 145 (181)
T ss_dssp CCCSEEEEEECSH------HHHTTTHHHHHHHHHHHHTCCTTCCCTTSCEEEEEESCCSCGGGCSCEEC--SSSCCBCCC
T ss_pred CCCCEEEEECCCc------hhhhcCHHHHHHHHHHHhCcCCCCcCCCCcEEEEEcCCCCccCCCCEEEE--CCEEEEcCC
Confidence 3446899999742 5666677788888988887542 233455667899999999999999 566 99999
Q ss_pred CCcchhHHHHHHhhCCCC
Q 015770 160 KESDVDSFVDDVLVNGKP 177 (400)
Q Consensus 160 t~~dVd~~Vee~L~~G~~ 177 (400)
+++++++|+++ +.+|++
T Consensus 146 t~e~v~~Il~~-l~~g~~ 162 (181)
T 3i9v_2 146 TRARLEALLAG-LRAGKR 162 (181)
T ss_dssp CHHHHHHHHHH-HHTTCC
T ss_pred CHHHHHHHHHH-HHcCCC
Confidence 99999999998 777765
No 7
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=50.23 E-value=20 Score=31.48 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=26.6
Q ss_pred CcEEEEccCCCCCCCcccccHHHHHH-HHHHHHhCCCCCcEEEEeec
Q 015770 188 GSYVFVCSHGSRDKRCGVCGPALIEK-FNAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G~~l~~a-L~~~l~~~gL~~~V~V~~ts 233 (400)
...+|||+++ .|- .++.++ |++.++++||.+.+.|...|
T Consensus 19 ~kVLFVCtGN----iCR---SpmAE~i~r~~~~~~gl~~~~~v~SAG 58 (173)
T 4etm_A 19 ISVLFVCLGN----ICR---SPMAEAIFRDLAAKKGLEGKIKADSAG 58 (173)
T ss_dssp EEEEEEESSS----SSH---HHHHHHHHHHHHHHTTCTTTEEEEEEE
T ss_pred cEEEEEeCCc----chh---hHHHHHHHHHHHHHcCCCCceEEeccc
Confidence 3679999996 443 344444 44556778998888887665
No 8
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A
Probab=41.36 E-value=37 Score=29.19 Aligned_cols=38 Identities=32% Similarity=0.625 Sum_probs=23.7
Q ss_pred cEEEEccCCCCCCCcccccHHHHHH-HHHHHHhCCCCCcEEEEeec
Q 015770 189 SYVFVCSHGSRDKRCGVCGPALIEK-FNAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 189 ~~IlVCth~~RD~rCg~~G~~l~~a-L~~~l~~~gL~~~V~V~~ts 233 (400)
..+|||+++ .|-+ ++.++ |++.+++.|+.+.+.|...|
T Consensus 6 ~VLFVC~gN----~cRS---pmAEal~~~~~~~~gl~~~~~v~SAG 44 (163)
T 1u2p_A 6 HVTFVCTGN----ICRS---PMAEKMFAQQLRHRGLGDAVRVTSAG 44 (163)
T ss_dssp EEEEEESSS----SSHH---HHHHHHHHHHHHHTTCTTTEEEEEEE
T ss_pred EEEEEcCCc----HhHH---HHHHHHHHHHHHHCCCCCcEEEEecc
Confidence 579999996 4433 33333 33445667887667776554
No 9
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=38.33 E-value=37 Score=29.28 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=23.9
Q ss_pred cEEEEccCCCCCCCcccccHHHHHH-HHHHHHhCCCCCcEEEEeec
Q 015770 189 SYVFVCSHGSRDKRCGVCGPALIEK-FNAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 189 ~~IlVCth~~RD~rCg~~G~~l~~a-L~~~l~~~gL~~~V~V~~ts 233 (400)
..+|||+++ .|-+ ++.++ |++.++++||.+.+.|...|
T Consensus 6 ~vLFVC~gN----~cRS---pmAE~~~~~~~~~~gl~~~~~v~SAG 44 (161)
T 3jvi_A 6 KLLFVCLGN----ICRS---PAAEAVMKKVIQNHHLTEKYICDSAG 44 (161)
T ss_dssp EEEEEESSS----SSHH---HHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred EEEEECCCc----hhHH---HHHHHHHHHHHHHcCCCCcEEEEeee
Confidence 568999996 4433 44443 34445577887677776554
No 10
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=38.33 E-value=37 Score=29.18 Aligned_cols=38 Identities=16% Similarity=0.459 Sum_probs=23.2
Q ss_pred cEEEEccCCCCCCCcccccHHHHHHH-HHHHHhCCCCCcEEEEeec
Q 015770 189 SYVFVCSHGSRDKRCGVCGPALIEKF-NAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 189 ~~IlVCth~~RD~rCg~~G~~l~~aL-~~~l~~~gL~~~V~V~~ts 233 (400)
..+|||+++ .|-+ ++.++| ++.+++.||.+.+.|...|
T Consensus 3 ~VLFVC~gN----icRS---pmAEai~~~~~~~~gl~~~~~v~SAG 41 (156)
T 2gi4_A 3 KILFICLGN----ICRS---PMAEFIMKDLVKKANLEKEFFINSAG 41 (156)
T ss_dssp EEEEECSSC----SSHH---HHHHHHHHHHHHHHTTTTTCEEEEEB
T ss_pred EEEEEeCCC----HHHH---HHHHHHHHHHHHhCCCCCcEEEEeee
Confidence 468999996 4433 444443 3344566887667776554
No 11
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=37.93 E-value=41 Score=28.86 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=23.7
Q ss_pred CcEEEEccCCCCCCCcccccHHHHHHH-HHHHHhCCCCCc-EEEEeec
Q 015770 188 GSYVFVCSHGSRDKRCGVCGPALIEKF-NAEIDSRGLKDQ-IFVKPCS 233 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G~~l~~aL-~~~l~~~gL~~~-V~V~~ts 233 (400)
...+|||+++ .|-+ ++.++| ++.+.++||.+. +.|...|
T Consensus 8 ~~VLFVCtgN----~cRS---pmAEal~~~~~~~~gl~~~~~~v~SAG 48 (161)
T 1d1q_A 8 ISVAFIALGN----FCRS---PMAEAIFKHEVEKANLENRFNKIDSFG 48 (161)
T ss_dssp EEEEEEESSS----SSHH---HHHHHHHHHHHHHTTCGGGEEEEEEEE
T ss_pred CEEEEEcCCc----HHHH---HHHHHHHHHHHHHcCCCCCeEEEEecc
Confidence 4689999996 4433 444443 344556788665 6665544
No 12
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A
Probab=36.11 E-value=43 Score=28.85 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=24.8
Q ss_pred CcEEEEccCCCCCCCcccccHHHHHH-HHHHHHhCCCCCcEEEEeec
Q 015770 188 GSYVFVCSHGSRDKRCGVCGPALIEK-FNAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G~~l~~a-L~~~l~~~gL~~~V~V~~ts 233 (400)
...+|||+++ .|- .++.++ |++.+.++||.+.+.|...|
T Consensus 6 ~~vLFVC~gN----~cR---SpmAE~~~~~~~~~~gl~~~~~v~SAG 45 (157)
T 3n8i_A 6 KSVLFVCLGN----ICR---SPIAEAVFRKLVTDQNISENWRVDSAA 45 (157)
T ss_dssp EEEEEEESSS----SSH---HHHHHHHHHHHHHHTTCGGGEEEEEEE
T ss_pred CEEEEECCCc----hhH---HHHHHHHHHHHHHHcCCCCcEEEEeee
Confidence 4578999996 443 344444 34455678887667776655
No 13
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=33.93 E-value=49 Score=28.42 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=23.0
Q ss_pred cEEEEccCCCCCCCcccccHHHHHHH-HHHHHhCCCCCcEEEEeec
Q 015770 189 SYVFVCSHGSRDKRCGVCGPALIEKF-NAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 189 ~~IlVCth~~RD~rCg~~G~~l~~aL-~~~l~~~gL~~~V~V~~ts 233 (400)
..+|||+++ .|-+ ++.++| ++.+.+.||.+.+.|...|
T Consensus 6 ~VLFVC~gN----~cRS---pmAEal~~~~~~~~gl~~~~~v~SAG 44 (161)
T 2cwd_A 6 RVLFVCLGN----ICRS---PMAEGIFRKLLKERGLEDRFEVDSAG 44 (161)
T ss_dssp EEEEEESSS----SSHH---HHHHHHHHHHHHHHTCTTTEEEEEEE
T ss_pred EEEEECCCc----HHHH---HHHHHHHHHHHHHcCCCCcEEEEecc
Confidence 579999996 4433 444433 3334456886667776655
No 14
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=30.68 E-value=70 Score=27.60 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=23.2
Q ss_pred CcEEEEccCCCCCCCcccccHHHHHH-HHHHHHhCCCCCcEEEEeec
Q 015770 188 GSYVFVCSHGSRDKRCGVCGPALIEK-FNAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 188 ~~~IlVCth~~RD~rCg~~G~~l~~a-L~~~l~~~gL~~~V~V~~ts 233 (400)
...+|||+++ .|- .++.++ |++.+++.||.+ +.|...|
T Consensus 7 ~~vLFVC~gN----~cR---SpmAE~i~~~~~~~~gl~~-~~v~SAG 45 (158)
T 3rof_A 7 VDVAFVCLGN----ICR---SPMAEAIMRQRLKDRNIHD-IKVHSRG 45 (158)
T ss_dssp EEEEEEESSS----SSH---HHHHHHHHHHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEeCCc----hhH---HHHHHHHHHHHHHHcCCCC-eEEEecc
Confidence 3578999996 443 344444 334456678875 7766544
No 15
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=28.17 E-value=91 Score=24.90 Aligned_cols=44 Identities=11% Similarity=0.336 Sum_probs=27.4
Q ss_pred cccHHHHHHHHHHHHhCCCCCcEEEEeec--CCCCcccCccEEEEcCC
Q 015770 205 VCGPALIEKFNAEIDSRGLKDQIFVKPCS--HIGGHKYAGNLIVYSPD 250 (400)
Q Consensus 205 ~~G~~l~~aL~~~l~~~gL~~~V~V~~ts--ciGGhc~AGpvIv~~p~ 250 (400)
..-.-+.+.+++.++++|++ +.|..++ -+...-....++++.|+
T Consensus 14 ~sTS~l~~k~~~~~~~~gi~--~~i~a~~~~~~~~~~~~~Dvil~~pq 59 (106)
T 1e2b_A 14 MSTSLLVSKMRAQAEKYEVP--VIIEAFPETLAGEKGQNADVVLLGPQ 59 (106)
T ss_dssp TTTHHHHHHHHHHHHHSCCS--EEEEEECSSSTTHHHHHCSEEEECTT
T ss_pred hhHHHHHHHHHHHHHHCCCC--eEEEEecHHHHHhhccCCCEEEEccc
Confidence 43347888999999999996 5665544 22111122356777665
No 16
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=27.74 E-value=1.4e+02 Score=23.84 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=31.2
Q ss_pred cEEEEccCCCCCCCcccc-cHHHHHHHHHHHHhCCCCCcEEEEeec--CCCCcccCccEEEEcCC
Q 015770 189 SYVFVCSHGSRDKRCGVC-GPALIEKFNAEIDSRGLKDQIFVKPCS--HIGGHKYAGNLIVYSPD 250 (400)
Q Consensus 189 ~~IlVCth~~RD~rCg~~-G~~l~~aL~~~l~~~gL~~~V~V~~ts--ciGGhc~AGpvIv~~p~ 250 (400)
.-++||..| .. ..-+...+++.+++.|++ +.|..++ =+-..-....+|+..++
T Consensus 23 kIlvvC~sG-------~gTS~ll~~kl~~~~~~~gi~--~~V~~~~~~~~~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 23 KIIVACGGA-------VATSTMAAEEIKELCQSHNIP--VELIQCRVNEIETYMDGVHLICTTAR 78 (113)
T ss_dssp EEEEESCSC-------SSHHHHHHHHHHHHHHHTTCC--EEEEEECTTTTTTSTTSCSEEEESSC
T ss_pred EEEEECCCC-------HHHHHHHHHHHHHHHHHcCCe--EEEEEecHHHHhhccCCCCEEEECCc
Confidence 356777753 33 356789999999999986 4444443 22111113356666544
No 17
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=22.31 E-value=1.5e+02 Score=23.63 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=21.7
Q ss_pred ccCccEEEEcCCCCCCccceEEeccCCCCHHHHHHHHHH
Q 015770 239 KYAGNLIVYSPDSEGKIMGHWYGYVTPDDVPAILDQHIA 277 (400)
Q Consensus 239 c~AGpvIv~~p~~~~~~~g~wYg~Vtp~dv~~Iv~~hl~ 277 (400)
..-+.++++.+++ .+...+.|..+++++.++|++.+.
T Consensus 115 ~~~P~~~lid~~G--~i~~~~~g~~~~~~l~~~l~~~l~ 151 (165)
T 3or5_A 115 TGIPTSFVIDASG--NVSGVIVGPRSKADFDRIVKMALG 151 (165)
T ss_dssp CSSSEEEEECTTS--BEEEEECSCCCHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCC--cEEEEEcCCCCHHHHHHHHHHHHh
Confidence 3344556665552 222345567777778888877544
No 18
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=20.56 E-value=1.3e+02 Score=23.83 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=24.1
Q ss_pred EEEEccCCCCCCCcccccHHHHHHHHHHHHhCCCCCcEEEEeec
Q 015770 190 YVFVCSHGSRDKRCGVCGPALIEKFNAEIDSRGLKDQIFVKPCS 233 (400)
Q Consensus 190 ~IlVCth~~RD~rCg~~G~~l~~aL~~~l~~~gL~~~V~V~~ts 233 (400)
-++||..| .... -+.+.+++.+++.|++ +.|..++
T Consensus 7 IlvvC~~G------~~TS-ll~~kl~~~~~~~gi~--~~i~~~~ 41 (109)
T 2l2q_A 7 ILLVCGAG------MSTS-MLVQRIEKYAKSKNIN--ATIEAIA 41 (109)
T ss_dssp EEEESSSS------CSSC-HHHHHHHHHHHHHTCS--EEEEEEC
T ss_pred EEEECCCh------HhHH-HHHHHHHHHHHHCCCC--eEEEEec
Confidence 46777764 2224 7888999999999985 5555444
Done!