BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015771
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
           From Methanosarcina Mazei .
 pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
           From Methanosarcina Mazei
          Length = 234

 Score = 33.1 bits (74), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 18/132 (13%)

Query: 34  VLDFGAGTG--SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 91
           +LD GAGTG  SAF  L E +P +     LV+ S+ M    ++  +G   +  I +    
Sbjct: 48  ILDLGAGTGLLSAF--LMEKYPEA--TFTLVDMSEKMLEIAKNRFRGNLKVKYIEA---- 99

Query: 92  QALNKDISKS--EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149
                D SK   E ++D+V+++  +  +   +D+  + ++ + + ++  + +      G 
Sbjct: 100 -----DYSKYDFEEKYDMVVSALSIHHLED-EDKKELYKRSYSILKESGIFINADLVHGE 153

Query: 150 SIISQMRSHILW 161
           +   +  +  +W
Sbjct: 154 TAFIENLNKTIW 165


>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
           Methyltransferase In Complex With Sah (Np_744700.1) From
           Pseudomonas Putida Kt2440 At 2.10 A Resolution
          Length = 227

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 28  GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS 87
           G  P +VLD G G G   W LR +  R +E V  V+  +++  A ++   G   L    S
Sbjct: 50  GRQPERVLDLGCGEG---WLLRALADRGIEAVG-VDGDRTLVDAARAAGAGEVHLA---S 102

Query: 88  YNSIQALNKDISKSEREHDLVIASYVL 114
           Y  +      + K   ++DL+ A++ L
Sbjct: 103 YAQLAEAKVPVGK---DYDLICANFAL 126


>pdb|4AG5|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
 pdb|4AG5|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
 pdb|4AG5|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
 pdb|4AG5|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
          Length = 392

 Score = 29.6 bits (65), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 68  MQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIAS 111
           +QR GQ+L+  P   L L      ++A+   ++ SE EHDL++ +
Sbjct: 315 VQRYGQALLDNPTYKLLLAQGEKDLEAITTLMNLSEAEHDLLVNA 359


>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken
 pdb|3BCC|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
           From Chicken
 pdb|2BCC|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
          Length = 196

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 23/140 (16%)

Query: 99  SKSEREHD--------LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE-----PGT 145
           +KS RE D        LV A   LG   + ++ +T        + DVL + +        
Sbjct: 22  TKSSRESDPSRKGFSYLVTAVTTLGVAYAAKNVVTQFVSSMSASADVLAMSKIEIKLSDI 81

Query: 146 PQGSSIISQMRSHILWMEKRKSRKYEARKSKDTN--KETSKDLVTLRSG--VHIVAPCPH 201
           P+G ++  + R   L++  R  ++ +   + + +  ++   DL  ++    V ++  C H
Sbjct: 82  PEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTH 141

Query: 202 EGRCPLENSGKY------CH 215
            G  P+ N+G +      CH
Sbjct: 142 LGCVPIANAGDFGGYYCPCH 161


>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
           Subtilis (M) And Thermus Thermophilus (T) From
           N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
           At S82r. Low Temperature (100k) Structure.
 pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
           Subtilis (M) And Thermus Thermophilus (T) From
           N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
           At S82r. Low Temperature (150k) Structure
          Length = 345

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
           3-Isopropylmalate Dehydrogenase Mutated At 172th From
           Ala To Phe
 pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
           3-Isopropylmalate Dehydrogenase Mutated At 172th From
           Ala To Phe
          Length = 345

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
           The C- Terminus, Hd711
 pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
           The C- Terminus, Hd711
          Length = 349

 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
           3-Isopropylmalate Dehydrogenase Mutated At 172th From
           Ala To Gly
          Length = 345

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Apo Enzyme
 pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Mn
 pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Mn
 pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Ipm And Mn
 pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Ipm And Mn
 pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Nadh And Mn
 pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Nadh And Mn
 pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Nadh And Mn
 pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus - Complex With Nadh And Mn
 pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus In Complex With Ipm, Mn And Nadh
 pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus In Complex With Ipm, Mn And Nadh
 pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus In Complex With Ipm, Mn And Nadh
 pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
           Thermophilus In Complex With Ipm, Mn And Nadh
          Length = 359

 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 185 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 242

Query: 115 GEVPS 119
           G++ S
Sbjct: 243 GDILS 247


>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
           The C- Terminus, Hd708
 pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
           The C- Terminus, Hd708
          Length = 346

 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
           Dehydrogenase From Thermus Thermophilus Hb8 : Its
           Thermostability And Structure
          Length = 345

 Score = 28.1 bits (61), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
           Analogue Of The Polyketide Crocacin-d
 pdb|3CWB|R Chain R, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
           Analogue Of The Polyketide Crocacin-d
 pdb|3H1H|E Chain E, Cytochrome Bc1 Complex From Chicken
 pdb|3H1H|R Chain R, Cytochrome Bc1 Complex From Chicken
 pdb|3H1I|E Chain E, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
           From Chicken
 pdb|3H1I|R Chain R, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
           From Chicken
 pdb|3H1J|E Chain E, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
 pdb|3H1J|R Chain R, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
 pdb|3H1K|E Chain E, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
           Derivative Of Kresoxim-Methyl Bound
 pdb|3H1K|R Chain R, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
           Derivative Of Kresoxim-Methyl Bound
 pdb|3H1L|E Chain E, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
           Qo And Qi Sites
 pdb|3H1L|R Chain R, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
           Qo And Qi Sites
 pdb|3L70|E Chain E, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
           Bound
 pdb|3L70|R Chain R, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
           Bound
 pdb|3L71|E Chain E, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
           Bound
 pdb|3L71|R Chain R, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
           Bound
 pdb|3L72|E Chain E, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
           Bound
 pdb|3L72|R Chain R, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
           Bound
 pdb|3L73|E Chain E, Cytochrome Bc1 Complex From Chicken With Triazolone
           Inhibitor
 pdb|3L73|R Chain R, Cytochrome Bc1 Complex From Chicken With Triazolone
           Inhibitor
 pdb|3L74|E Chain E, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
 pdb|3L74|R Chain R, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
 pdb|3L75|E Chain E, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
 pdb|3L75|R Chain R, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
 pdb|3TGU|E Chain E, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
           Inhibitor Bound
 pdb|3TGU|R Chain R, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
           Inhibitor Bound
          Length = 196

 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 15/124 (12%)

Query: 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE-----PGTPQGSSIISQMRSHILW 161
           LV A+  +    + ++ +T        + DVL L +        P+G ++  + R   L+
Sbjct: 38  LVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLF 97

Query: 162 MEKRK----SRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKY---- 213
           +  R     +++ E   SK  + +   D V     V +V  C H G  P+ NSG +    
Sbjct: 98  VRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDFGGYY 157

Query: 214 --CH 215
             CH
Sbjct: 158 CPCH 161


>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
           The C- Terminus, Hd177
 pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
           The C- Terminus, Hd177
          Length = 344

 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
 pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
          Length = 345

 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
          Length = 343

 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 180 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 237

Query: 115 GEVPS 119
           G++ S
Sbjct: 238 GDILS 242


>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
 pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
           With Nad+: Ligand-Induced Loop-Closing And Mechanism For
           Cofactor Specificity
 pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
           Structure
 pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
           Structure
 pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
           With The Inhibitor And Nad+
          Length = 345

 Score = 28.1 bits (61), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
           Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
           Thermophilus At 2.2 Angstroms Resolution
          Length = 345

 Score = 28.1 bits (61), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114
           S++K N++E  +  ++  + + +G  D+ L H Y  + A+   + +S    D+V+   + 
Sbjct: 182 SVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQY--VDAMAMHLVRSPARFDVVVTGNIF 239

Query: 115 GEVPS 119
           G++ S
Sbjct: 240 GDILS 244


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,640,612
Number of Sequences: 62578
Number of extensions: 488984
Number of successful extensions: 1271
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1271
Number of HSP's gapped (non-prelim): 29
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)