Query 015771
Match_columns 400
No_of_seqs 294 out of 1634
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 09:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09243 Rsm22: Mitochondrial 100.0 5.2E-75 1.1E-79 560.4 26.4 270 2-399 5-274 (274)
2 COG5459 Predicted rRNA methyla 100.0 1.7E-68 3.6E-73 508.8 12.7 310 2-400 85-403 (484)
3 KOG2539 Mitochondrial/chloropl 100.0 1.5E-51 3.2E-56 407.7 12.7 282 2-400 172-466 (491)
4 COG2226 UbiE Methylase involve 99.4 5.9E-12 1.3E-16 118.6 16.6 112 30-150 51-164 (238)
5 KOG2539 Mitochondrial/chloropl 99.4 9.4E-15 2E-19 146.2 -3.1 286 12-398 107-400 (491)
6 PF01209 Ubie_methyltran: ubiE 99.4 3.9E-13 8.5E-18 127.0 7.0 136 4-149 12-160 (233)
7 PRK15451 tRNA cmo(5)U34 methyl 99.4 8E-12 1.7E-16 119.1 15.2 135 4-148 31-170 (247)
8 PF12847 Methyltransf_18: Meth 99.4 3.8E-12 8.3E-17 105.4 10.4 105 31-143 2-112 (112)
9 PLN02233 ubiquinone biosynthes 99.3 6E-11 1.3E-15 114.0 17.2 122 30-160 73-199 (261)
10 TIGR00740 methyltransferase, p 99.3 5.5E-11 1.2E-15 112.5 15.6 128 8-145 32-164 (239)
11 PRK11036 putative S-adenosyl-L 99.3 5.6E-11 1.2E-15 113.7 12.8 119 15-144 30-151 (255)
12 TIGR02752 MenG_heptapren 2-hep 99.2 2E-10 4.3E-15 107.8 15.5 111 30-148 45-157 (231)
13 TIGR03587 Pse_Me-ase pseudamin 99.2 2.6E-10 5.6E-15 105.7 13.9 106 30-148 43-148 (204)
14 PRK14103 trans-aconitate 2-met 99.2 1.9E-10 4.1E-15 109.9 13.0 113 18-145 17-129 (255)
15 TIGR00477 tehB tellurite resis 99.2 1.5E-10 3.2E-15 106.5 11.2 113 19-142 19-133 (195)
16 PRK11207 tellurite resistance 99.2 2.5E-10 5.4E-15 105.1 12.3 112 21-142 21-134 (197)
17 PLN02396 hexaprenyldihydroxybe 99.1 5.8E-10 1.3E-14 110.1 13.6 105 29-144 130-237 (322)
18 PRK05785 hypothetical protein; 99.1 1.3E-09 2.9E-14 102.6 14.9 101 31-149 52-152 (226)
19 PF13847 Methyltransf_31: Meth 99.1 1.9E-10 4.2E-15 101.1 8.5 106 31-144 4-112 (152)
20 PRK06202 hypothetical protein; 99.1 1.8E-09 3.9E-14 101.7 15.6 109 30-146 60-170 (232)
21 PF08241 Methyltransf_11: Meth 99.1 3.3E-10 7.3E-15 90.1 8.7 93 35-140 1-95 (95)
22 PLN02244 tocopherol O-methyltr 99.1 1E-09 2.2E-14 109.5 13.9 109 29-144 117-225 (340)
23 PRK10258 biotin biosynthesis p 99.1 3.3E-09 7.1E-14 101.0 16.4 113 20-146 32-144 (251)
24 COG4106 Tam Trans-aconitate me 99.1 4.9E-10 1.1E-14 102.5 9.7 115 18-147 18-134 (257)
25 TIGR02072 BioC biotin biosynth 99.1 2.7E-09 5.8E-14 99.7 14.6 107 29-146 33-139 (240)
26 PF05401 NodS: Nodulation prot 99.1 6.5E-10 1.4E-14 101.1 9.8 113 32-155 45-167 (201)
27 COG2227 UbiG 2-polyprenyl-3-me 99.1 5.9E-10 1.3E-14 104.0 9.8 105 29-144 58-163 (243)
28 PTZ00098 phosphoethanolamine N 99.1 2.8E-09 6.1E-14 102.6 14.5 106 30-145 52-159 (263)
29 PRK01683 trans-aconitate 2-met 99.1 3.4E-09 7.4E-14 101.2 14.9 113 20-145 21-133 (258)
30 PRK12335 tellurite resistance 99.1 1.3E-09 2.8E-14 106.2 12.2 104 29-143 119-224 (287)
31 PF08242 Methyltransf_12: Meth 99.1 1.8E-11 3.8E-16 99.6 -0.8 97 35-138 1-99 (99)
32 KOG4300 Predicted methyltransf 99.1 6.2E-10 1.3E-14 101.1 9.0 119 32-160 78-199 (252)
33 PRK08317 hypothetical protein; 99.1 7.9E-09 1.7E-13 96.4 16.7 115 22-144 11-126 (241)
34 PRK00216 ubiE ubiquinone/menaq 99.0 4.4E-09 9.5E-14 98.4 14.9 111 30-148 51-164 (239)
35 PF13649 Methyltransf_25: Meth 99.0 8.4E-10 1.8E-14 90.3 7.6 93 34-133 1-96 (101)
36 PF13489 Methyltransf_23: Meth 99.0 3.1E-10 6.8E-15 99.4 5.3 98 29-147 21-120 (161)
37 PLN02490 MPBQ/MSBQ methyltrans 99.0 3.5E-09 7.5E-14 105.2 12.3 107 31-147 114-220 (340)
38 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.1E-08 2.3E-13 94.8 14.2 112 29-148 38-149 (223)
39 PF03848 TehB: Tellurite resis 99.0 2.7E-09 5.8E-14 97.6 9.7 116 17-143 17-134 (192)
40 PLN02585 magnesium protoporphy 99.0 1.2E-08 2.6E-13 100.6 14.8 102 29-141 143-248 (315)
41 KOG1270 Methyltransferases [Co 98.9 2E-09 4.4E-14 101.2 8.0 117 20-142 72-195 (282)
42 PLN03075 nicotianamine synthas 98.9 1.1E-08 2.4E-13 99.3 13.4 123 9-141 102-232 (296)
43 PRK15068 tRNA mo(5)U34 methylt 98.9 9.4E-09 2E-13 101.8 12.3 106 25-141 117-225 (322)
44 PRK07580 Mg-protoporphyrin IX 98.9 1.8E-08 4E-13 94.1 13.5 106 29-145 62-168 (230)
45 TIGR00452 methyltransferase, p 98.9 9.2E-09 2E-13 101.3 11.8 110 22-142 113-225 (314)
46 smart00138 MeTrc Methyltransfe 98.9 8.2E-09 1.8E-13 99.4 10.6 112 30-143 99-243 (264)
47 PRK11873 arsM arsenite S-adeno 98.9 1.3E-08 2.9E-13 98.0 11.7 108 31-144 78-185 (272)
48 smart00828 PKS_MT Methyltransf 98.9 1.1E-08 2.5E-13 95.4 10.6 106 32-144 1-106 (224)
49 PLN02336 phosphoethanolamine N 98.9 2.3E-08 5E-13 103.9 13.6 106 30-145 266-372 (475)
50 PRK11088 rrmA 23S rRNA methylt 98.9 2.7E-08 5.9E-13 96.1 12.9 127 11-159 66-194 (272)
51 TIGR00138 gidB 16S rRNA methyl 98.9 3.4E-08 7.3E-13 89.9 12.3 100 29-142 41-142 (181)
52 TIGR02021 BchM-ChlM magnesium 98.8 4.8E-08 1E-12 91.1 13.3 100 28-141 53-156 (219)
53 PRK00121 trmB tRNA (guanine-N( 98.8 1.8E-08 4E-13 93.1 10.3 121 30-159 40-169 (202)
54 PRK00107 gidB 16S rRNA methylt 98.8 2.7E-08 5.8E-13 91.0 11.3 100 31-144 46-147 (187)
55 PLN02336 phosphoethanolamine N 98.8 2.2E-08 4.8E-13 104.1 11.8 113 22-144 29-144 (475)
56 TIGR02469 CbiT precorrin-6Y C5 98.8 7.6E-08 1.6E-12 80.6 11.5 101 30-141 19-121 (124)
57 TIGR01983 UbiG ubiquinone bios 98.8 1E-07 2.3E-12 88.7 13.4 106 29-144 44-151 (224)
58 PRK05134 bifunctional 3-demeth 98.8 7.6E-08 1.6E-12 90.5 12.3 114 21-144 39-153 (233)
59 KOG1540 Ubiquinone biosynthesi 98.8 1.3E-07 2.8E-12 88.8 13.3 139 4-146 61-218 (296)
60 TIGR00537 hemK_rel_arch HemK-r 98.8 1E-07 2.2E-12 86.2 12.5 108 29-148 18-146 (179)
61 PRK06922 hypothetical protein; 98.8 1.5E-07 3.2E-12 99.7 14.9 106 30-143 418-538 (677)
62 PRK11705 cyclopropane fatty ac 98.8 1.3E-07 2.9E-12 95.8 14.1 115 18-146 155-271 (383)
63 PRK13944 protein-L-isoaspartat 98.7 1.4E-07 3E-12 87.4 12.3 98 31-142 73-173 (205)
64 TIGR02716 C20_methyl_CrtF C-20 98.7 2.3E-07 4.9E-12 91.1 14.4 104 31-143 150-255 (306)
65 KOG3010 Methyltransferase [Gen 98.7 3E-08 6.4E-13 92.4 7.2 113 17-140 22-135 (261)
66 PRK08287 cobalt-precorrin-6Y C 98.7 3.1E-07 6.6E-12 83.6 12.9 101 30-144 31-133 (187)
67 TIGR02081 metW methionine bios 98.7 3.1E-07 6.7E-12 84.1 12.4 104 19-141 4-108 (194)
68 TIGR03438 probable methyltrans 98.7 2.2E-07 4.8E-12 91.2 12.1 118 17-143 52-178 (301)
69 TIGR03840 TMPT_Se_Te thiopurin 98.6 3.2E-07 7E-12 85.6 12.3 114 17-141 21-151 (213)
70 TIGR00080 pimt protein-L-isoas 98.6 3.2E-07 6.9E-12 85.5 12.2 99 30-142 77-177 (215)
71 PRK13942 protein-L-isoaspartat 98.6 3.4E-07 7.5E-12 85.3 12.4 99 30-142 76-176 (212)
72 PRK04266 fibrillarin; Provisio 98.6 4.9E-07 1.1E-11 85.1 13.5 110 18-140 61-174 (226)
73 PRK09489 rsmC 16S ribosomal RN 98.6 6.1E-07 1.3E-11 89.6 14.1 113 30-152 196-312 (342)
74 PRK04457 spermidine synthase; 98.6 4.1E-07 9E-12 87.5 12.3 112 30-145 66-180 (262)
75 PF05175 MTS: Methyltransferas 98.6 9.1E-07 2E-11 79.5 13.7 115 30-152 31-149 (170)
76 COG2230 Cfa Cyclopropane fatty 98.6 5.5E-07 1.2E-11 86.8 12.7 122 16-147 58-181 (283)
77 PRK15001 SAM-dependent 23S rib 98.6 5.3E-07 1.1E-11 90.9 12.3 106 31-142 229-340 (378)
78 TIGR00406 prmA ribosomal prote 98.6 1.1E-06 2.4E-11 85.7 14.2 114 14-144 145-261 (288)
79 PRK11188 rrmJ 23S rRNA methylt 98.5 9.7E-07 2.1E-11 82.1 12.5 130 19-160 39-183 (209)
80 PF00891 Methyltransf_2: O-met 98.5 8.7E-07 1.9E-11 83.9 12.4 101 27-144 96-201 (241)
81 PF02353 CMAS: Mycolic acid cy 98.5 7.2E-07 1.6E-11 86.3 12.0 121 17-147 49-171 (273)
82 PRK00517 prmA ribosomal protei 98.5 2.1E-06 4.6E-11 81.9 14.6 109 13-144 104-215 (250)
83 PF08003 Methyltransf_9: Prote 98.5 8.3E-07 1.8E-11 85.9 11.7 107 22-140 107-217 (315)
84 PRK00377 cbiT cobalt-precorrin 98.5 2.2E-06 4.8E-11 78.8 13.9 116 30-159 40-158 (198)
85 PF13659 Methyltransf_26: Meth 98.5 7.9E-07 1.7E-11 74.0 9.5 105 32-143 2-116 (117)
86 PF07021 MetW: Methionine bios 98.5 1.7E-06 3.8E-11 78.6 11.1 93 32-141 15-108 (193)
87 PRK13255 thiopurine S-methyltr 98.4 2.7E-06 5.8E-11 79.7 12.5 117 17-141 24-154 (218)
88 PRK14967 putative methyltransf 98.4 4.8E-06 1E-10 78.0 14.3 71 31-111 37-108 (223)
89 COG2264 PrmA Ribosomal protein 98.4 1.8E-06 3.8E-11 84.0 11.0 115 13-141 147-262 (300)
90 TIGR00438 rrmJ cell division p 98.4 2.3E-06 5E-11 78.0 11.2 127 19-158 20-162 (188)
91 PF06325 PrmA: Ribosomal prote 98.4 1.6E-06 3.4E-11 84.7 10.6 112 12-141 145-258 (295)
92 KOG2361 Predicted methyltransf 98.4 1.1E-06 2.4E-11 82.0 9.0 110 31-145 72-186 (264)
93 PRK00312 pcm protein-L-isoaspa 98.4 2.6E-06 5.6E-11 79.1 11.6 97 30-143 78-176 (212)
94 cd02440 AdoMet_MTases S-adenos 98.4 3.8E-06 8.3E-11 66.2 10.9 99 33-141 1-103 (107)
95 TIGR00091 tRNA (guanine-N(7)-) 98.4 3.5E-06 7.6E-11 77.3 12.1 108 31-143 17-133 (194)
96 COG4976 Predicted methyltransf 98.4 3.7E-07 8.1E-12 84.5 4.7 97 32-141 127-224 (287)
97 TIGR03534 RF_mod_PrmC protein- 98.4 7.3E-06 1.6E-10 77.5 13.8 73 30-111 87-161 (251)
98 PRK09328 N5-glutamine S-adenos 98.3 6.2E-06 1.3E-10 79.3 12.1 73 30-111 108-182 (275)
99 PRK00811 spermidine synthase; 98.3 7.3E-06 1.6E-10 79.8 12.6 112 30-147 76-195 (283)
100 smart00650 rADc Ribosomal RNA 98.3 4.3E-06 9.3E-11 74.9 9.8 72 31-112 14-85 (169)
101 PF01135 PCMT: Protein-L-isoas 98.3 3.6E-06 7.8E-11 78.3 9.2 98 32-143 74-173 (209)
102 PRK07402 precorrin-6B methylas 98.3 1E-05 2.3E-10 74.1 12.1 100 30-143 40-143 (196)
103 PRK13943 protein-L-isoaspartat 98.3 7.9E-06 1.7E-10 80.9 11.7 99 30-142 80-180 (322)
104 TIGR03533 L3_gln_methyl protei 98.3 1.3E-05 2.7E-10 78.2 12.9 73 30-111 121-196 (284)
105 PRK14966 unknown domain/N5-glu 98.2 1.8E-05 3.9E-10 80.4 14.2 72 32-111 253-326 (423)
106 PTZ00146 fibrillarin; Provisio 98.2 8.1E-06 1.8E-10 79.3 11.1 104 32-143 134-238 (293)
107 TIGR00417 speE spermidine synt 98.2 1.5E-05 3.2E-10 77.0 12.9 107 30-141 72-185 (270)
108 COG2242 CobL Precorrin-6B meth 98.2 7.2E-06 1.6E-10 74.2 9.9 97 31-140 35-133 (187)
109 PRK14968 putative methyltransf 98.2 2E-05 4.3E-10 71.0 12.7 104 30-144 23-150 (188)
110 KOG1541 Predicted protein carb 98.2 4.7E-06 1E-10 76.9 8.5 102 26-140 46-158 (270)
111 COG2518 Pcm Protein-L-isoaspar 98.2 1.5E-05 3.3E-10 73.5 11.9 96 31-143 73-170 (209)
112 PRK11805 N5-glutamine S-adenos 98.2 1.5E-05 3.3E-10 78.5 12.5 71 32-111 135-208 (307)
113 PF05219 DREV: DREV methyltran 98.2 1.1E-05 2.4E-10 76.6 10.5 95 28-140 92-186 (265)
114 TIGR03704 PrmC_rel_meth putati 98.2 3.5E-05 7.6E-10 73.7 14.0 73 31-111 87-160 (251)
115 PRK01581 speE spermidine synth 98.2 2.5E-05 5.3E-10 78.1 13.3 113 29-146 149-271 (374)
116 COG4123 Predicted O-methyltran 98.2 1.7E-05 3.6E-10 75.3 11.5 108 31-143 45-171 (248)
117 TIGR00536 hemK_fam HemK family 98.2 3.4E-05 7.4E-10 75.1 14.0 71 32-111 116-189 (284)
118 PRK01544 bifunctional N5-gluta 98.2 2.7E-05 5.8E-10 81.8 14.0 73 30-111 138-213 (506)
119 COG2890 HemK Methylase of poly 98.1 3.8E-05 8.2E-10 74.7 13.2 71 33-111 113-183 (280)
120 PRK03522 rumB 23S rRNA methylu 98.1 1.8E-05 3.8E-10 78.2 11.1 124 8-145 151-276 (315)
121 PF01739 CheR: CheR methyltran 98.1 7.8E-06 1.7E-10 75.3 7.9 113 29-143 30-176 (196)
122 PLN02781 Probable caffeoyl-CoA 98.1 2.6E-05 5.7E-10 73.8 11.7 49 30-79 68-116 (234)
123 PLN02232 ubiquinone biosynthes 98.1 7.9E-06 1.7E-10 72.7 7.6 82 60-148 1-87 (160)
124 PRK14121 tRNA (guanine-N(7)-)- 98.1 5.1E-05 1.1E-09 76.6 12.9 108 30-143 122-236 (390)
125 TIGR01177 conserved hypothetic 98.0 5.2E-05 1.1E-09 75.4 12.6 104 32-145 184-297 (329)
126 COG2813 RsmC 16S RNA G1207 met 98.0 7E-05 1.5E-09 72.7 13.0 115 25-147 153-271 (300)
127 COG2263 Predicted RNA methylas 98.0 2.5E-05 5.4E-10 70.7 9.1 102 19-133 34-136 (198)
128 PHA03411 putative methyltransf 98.0 5.1E-05 1.1E-09 73.1 11.6 76 31-118 65-140 (279)
129 PF10294 Methyltransf_16: Puta 98.0 3.5E-05 7.6E-10 69.5 9.9 108 28-141 43-155 (173)
130 PHA03412 putative methyltransf 98.0 4.6E-05 1E-09 71.8 10.8 107 31-149 50-167 (241)
131 PRK13168 rumA 23S rRNA m(5)U19 98.0 3.4E-05 7.3E-10 79.8 10.8 113 16-143 283-400 (443)
132 PRK14901 16S rRNA methyltransf 98.0 5.9E-05 1.3E-09 77.8 12.0 112 30-144 252-386 (434)
133 KOG2899 Predicted methyltransf 98.0 5.8E-05 1.3E-09 70.7 10.6 126 28-159 56-222 (288)
134 TIGR00446 nop2p NOL1/NOP2/sun 98.0 3.2E-05 7E-10 74.5 8.8 110 30-144 71-201 (264)
135 PRK14903 16S rRNA methyltransf 97.9 7.5E-05 1.6E-09 77.0 12.0 110 30-144 237-368 (431)
136 PF03291 Pox_MCEL: mRNA cappin 97.9 4.1E-05 8.8E-10 76.1 9.5 120 30-157 62-198 (331)
137 TIGR00563 rsmB ribosomal RNA s 97.9 8.1E-05 1.7E-09 76.6 12.0 111 30-145 238-371 (426)
138 PRK14896 ksgA 16S ribosomal RN 97.9 2.6E-05 5.7E-10 74.8 7.9 93 10-114 9-101 (258)
139 PLN02366 spermidine synthase 97.9 0.00017 3.7E-09 71.0 13.3 107 30-141 91-205 (308)
140 TIGR02085 meth_trns_rumB 23S r 97.9 5.9E-05 1.3E-09 76.3 10.3 133 7-159 210-344 (374)
141 PRK03612 spermidine synthase; 97.9 0.00017 3.6E-09 76.2 13.6 107 30-141 297-414 (521)
142 KOG1271 Methyltransferases [Ge 97.9 3.9E-05 8.4E-10 69.0 7.1 105 32-143 69-182 (227)
143 PLN02476 O-methyltransferase 97.9 0.00021 4.6E-09 69.2 12.7 107 29-143 117-228 (278)
144 TIGR00755 ksgA dimethyladenosi 97.9 8.1E-05 1.8E-09 71.1 9.8 65 10-78 9-73 (253)
145 TIGR00478 tly hemolysin TlyA f 97.9 0.00016 3.4E-09 68.2 11.3 56 10-71 58-113 (228)
146 KOG2904 Predicted methyltransf 97.9 5.2E-05 1.1E-09 72.2 8.0 93 15-111 134-229 (328)
147 PF05891 Methyltransf_PK: AdoM 97.8 7.9E-05 1.7E-09 69.2 9.0 111 31-149 56-168 (218)
148 PRK10901 16S rRNA methyltransf 97.8 0.00019 4.2E-09 73.9 12.9 107 30-144 244-374 (427)
149 PRK15128 23S rRNA m(5)C1962 me 97.8 0.0001 2.2E-09 75.1 10.6 121 30-160 220-354 (396)
150 PRK14904 16S rRNA methyltransf 97.8 0.00011 2.4E-09 76.0 10.9 109 30-144 250-379 (445)
151 PRK14902 16S rRNA methyltransf 97.8 0.00016 3.4E-09 74.9 11.6 48 31-79 251-298 (444)
152 COG1352 CheR Methylase of chem 97.7 0.00023 5E-09 68.6 10.9 113 30-143 96-242 (268)
153 TIGR00479 rumA 23S rRNA (uraci 97.7 0.00029 6.2E-09 72.6 12.4 97 10-112 272-370 (431)
154 PRK11783 rlmL 23S rRNA m(2)G24 97.7 9.2E-05 2E-09 80.8 9.0 73 31-111 539-615 (702)
155 COG4122 Predicted O-methyltran 97.7 0.00024 5.2E-09 66.4 10.3 107 30-143 59-166 (219)
156 PRK13256 thiopurine S-methyltr 97.7 0.00048 1E-08 64.8 12.4 101 30-141 43-162 (226)
157 PF01596 Methyltransf_3: O-met 97.7 0.00033 7.1E-09 65.0 11.2 92 16-112 34-129 (205)
158 PF12147 Methyltransf_20: Puta 97.7 0.00056 1.2E-08 66.0 12.7 111 29-142 134-249 (311)
159 PRK10909 rsmD 16S rRNA m(2)G96 97.7 0.00035 7.6E-09 64.6 10.9 103 31-145 54-161 (199)
160 PRK00274 ksgA 16S ribosomal RN 97.7 6.6E-05 1.4E-09 72.6 6.4 57 18-78 30-86 (272)
161 PRK10611 chemotaxis methyltran 97.6 0.00021 4.6E-09 69.6 9.0 112 30-142 115-262 (287)
162 COG2519 GCD14 tRNA(1-methylade 97.6 0.00078 1.7E-08 63.8 12.3 114 21-145 85-198 (256)
163 PTZ00338 dimethyladenosine tra 97.6 0.00025 5.4E-09 69.4 8.9 58 17-78 23-80 (294)
164 PLN02589 caffeoyl-CoA O-methyl 97.6 0.00086 1.9E-08 64.0 12.3 51 29-80 78-128 (247)
165 PF05724 TPMT: Thiopurine S-me 97.6 0.00012 2.6E-09 68.6 6.1 117 18-140 25-153 (218)
166 PLN02672 methionine S-methyltr 97.6 0.00015 3.3E-09 81.5 7.9 48 29-78 117-164 (1082)
167 COG3963 Phospholipid N-methylt 97.5 0.0012 2.7E-08 58.7 11.2 108 30-144 48-158 (194)
168 PLN02823 spermine synthase 97.5 0.00071 1.5E-08 67.5 11.0 109 30-145 103-222 (336)
169 TIGR00095 RNA methyltransferas 97.5 0.002 4.3E-08 59.0 12.9 47 30-79 49-95 (189)
170 PF06080 DUF938: Protein of un 97.5 0.00098 2.1E-08 61.5 10.5 121 18-148 14-147 (204)
171 PRK04148 hypothetical protein; 97.5 0.00087 1.9E-08 57.9 9.5 102 20-141 6-108 (134)
172 PRK11727 23S rRNA mA1618 methy 97.5 0.00049 1.1E-08 68.1 9.1 84 30-115 114-200 (321)
173 KOG1500 Protein arginine N-met 97.5 0.0012 2.5E-08 64.7 11.3 77 26-111 173-250 (517)
174 KOG2940 Predicted methyltransf 97.5 0.00022 4.8E-09 66.3 6.1 114 32-159 74-187 (325)
175 KOG1499 Protein arginine N-met 97.4 0.00048 1E-08 67.9 7.4 81 29-116 59-139 (346)
176 KOG1975 mRNA cap methyltransfe 97.3 0.0014 3E-08 64.0 9.9 121 32-158 119-250 (389)
177 PRK00050 16S rRNA m(4)C1402 me 97.2 0.0018 4E-08 63.3 9.9 92 19-113 8-99 (296)
178 KOG3178 Hydroxyindole-O-methyl 97.2 0.005 1.1E-07 60.9 12.5 99 32-147 179-280 (342)
179 PF05185 PRMT5: PRMT5 arginine 97.2 0.00058 1.2E-08 70.7 6.1 100 30-139 186-294 (448)
180 TIGR03439 methyl_EasF probable 97.2 0.012 2.6E-07 58.3 15.1 123 15-141 63-196 (319)
181 PF08704 GCD14: tRNA methyltra 97.2 0.0023 5.1E-08 61.0 9.5 113 30-150 40-154 (247)
182 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.0019 4.1E-08 61.9 8.3 126 15-143 39-200 (256)
183 PF03141 Methyltransf_29: Puta 97.0 0.00078 1.7E-08 69.4 5.1 110 18-143 101-220 (506)
184 TIGR02143 trmA_only tRNA (urac 96.9 0.0017 3.8E-08 65.2 6.6 64 10-78 178-241 (353)
185 PF11968 DUF3321: Putative met 96.9 0.003 6.5E-08 58.6 7.6 92 31-144 52-151 (219)
186 COG3897 Predicted methyltransf 96.9 0.0063 1.4E-07 55.6 9.0 104 29-146 78-183 (218)
187 KOG1661 Protein-L-isoaspartate 96.9 0.0045 9.8E-08 57.1 8.0 100 32-139 84-190 (237)
188 KOG0820 Ribosomal RNA adenine 96.8 0.0061 1.3E-07 58.3 9.1 59 18-80 46-104 (315)
189 KOG3420 Predicted RNA methylas 96.8 0.0027 5.8E-08 55.3 5.8 91 17-116 35-126 (185)
190 COG0421 SpeE Spermidine syntha 96.8 0.01 2.2E-07 57.7 10.4 114 30-149 76-196 (282)
191 COG0030 KsgA Dimethyladenosine 96.8 0.0045 9.7E-08 59.3 7.6 73 10-86 10-82 (259)
192 PF13679 Methyltransf_32: Meth 96.8 0.02 4.3E-07 49.7 11.1 86 29-118 24-113 (141)
193 PF01564 Spermine_synth: Sperm 96.8 0.0044 9.5E-08 59.2 7.5 108 30-142 76-191 (246)
194 PRK05031 tRNA (uracil-5-)-meth 96.7 0.0029 6.3E-08 63.8 6.4 66 8-78 185-250 (362)
195 KOG3987 Uncharacterized conser 96.7 0.00066 1.4E-08 62.3 1.5 96 27-139 107-204 (288)
196 PRK00536 speE spermidine synth 96.7 0.012 2.6E-07 56.6 9.8 102 29-147 71-175 (262)
197 PF01728 FtsJ: FtsJ-like methy 96.6 0.0074 1.6E-07 54.4 7.8 48 19-67 9-59 (181)
198 KOG3191 Predicted N6-DNA-methy 96.6 0.028 6E-07 50.9 10.9 79 30-116 43-124 (209)
199 TIGR02987 met_A_Alw26 type II 96.5 0.013 2.7E-07 62.1 9.8 50 30-79 31-86 (524)
200 PRK11933 yebU rRNA (cytosine-C 96.4 0.027 5.9E-07 58.7 11.3 116 30-150 113-251 (470)
201 PF08123 DOT1: Histone methyla 96.3 0.027 5.8E-07 52.3 9.5 60 12-77 28-87 (205)
202 PF03059 NAS: Nicotianamine sy 96.2 0.033 7.2E-07 53.9 9.9 104 30-142 120-229 (276)
203 PF03602 Cons_hypoth95: Conser 96.2 0.013 2.7E-07 53.5 6.7 119 18-146 32-156 (183)
204 KOG3201 Uncharacterized conser 96.2 0.0055 1.2E-07 54.3 4.0 128 8-143 11-141 (201)
205 PF02527 GidB: rRNA small subu 96.1 0.013 2.9E-07 53.4 6.0 110 33-158 51-162 (184)
206 PRK04338 N(2),N(2)-dimethylgua 95.9 0.019 4.1E-07 58.4 7.1 97 32-141 59-157 (382)
207 COG0500 SmtA SAM-dependent met 95.9 0.09 2E-06 42.9 10.1 107 34-147 52-160 (257)
208 TIGR01444 fkbM_fam methyltrans 95.9 0.016 3.5E-07 49.7 5.6 44 33-78 1-44 (143)
209 PF07942 N2227: N2227-like pro 95.8 0.14 3.1E-06 49.5 12.3 124 15-143 37-203 (270)
210 PF02384 N6_Mtase: N-6 DNA Met 95.8 0.013 2.9E-07 57.4 5.2 130 29-161 45-203 (311)
211 COG2265 TrmA SAM-dependent met 95.8 0.038 8.2E-07 57.0 8.6 123 7-141 270-394 (432)
212 PF05958 tRNA_U5-meth_tr: tRNA 95.7 0.023 5E-07 57.1 6.8 68 6-78 173-240 (352)
213 PF00398 RrnaAD: Ribosomal RNA 95.6 0.046 9.9E-07 52.6 8.0 66 17-86 17-82 (262)
214 PF09445 Methyltransf_15: RNA 95.6 0.025 5.5E-07 50.5 5.7 43 33-79 2-44 (163)
215 PF01170 UPF0020: Putative RNA 95.5 0.19 4.1E-06 45.5 11.4 82 32-116 30-118 (179)
216 COG0357 GidB Predicted S-adeno 95.5 0.11 2.4E-06 48.6 9.7 95 31-139 68-165 (215)
217 PF10672 Methyltrans_SAM: S-ad 95.5 0.073 1.6E-06 51.9 8.9 115 30-150 123-246 (286)
218 PF05148 Methyltransf_8: Hypot 95.5 0.057 1.2E-06 50.1 7.6 86 32-145 74-161 (219)
219 KOG1663 O-methyltransferase [S 95.4 0.18 4E-06 47.3 10.7 82 29-112 72-157 (237)
220 PF04672 Methyltransf_19: S-ad 95.3 0.32 7E-06 46.8 12.5 123 32-158 70-206 (267)
221 KOG2793 Putative N2,N2-dimethy 95.2 0.13 2.8E-06 49.1 9.4 111 24-141 78-198 (248)
222 COG1092 Predicted SAM-dependen 95.0 0.11 2.5E-06 52.8 9.0 113 30-148 217-342 (393)
223 PF01269 Fibrillarin: Fibrilla 95.0 0.14 3E-06 48.0 8.6 103 31-143 74-179 (229)
224 PF11312 DUF3115: Protein of u 95.0 0.074 1.6E-06 52.1 7.2 140 11-152 57-250 (315)
225 PF02390 Methyltransf_4: Putat 94.8 0.072 1.6E-06 49.0 6.2 106 33-143 20-134 (195)
226 COG0742 N6-adenine-specific me 94.6 0.36 7.8E-06 44.1 10.3 49 29-80 42-90 (187)
227 COG4076 Predicted RNA methylas 94.6 0.046 1E-06 49.8 4.3 41 32-76 34-74 (252)
228 COG0220 Predicted S-adenosylme 94.3 0.43 9.2E-06 45.0 10.5 105 32-142 50-164 (227)
229 PRK11783 rlmL 23S rRNA m(2)G24 94.3 0.28 6.1E-06 53.8 10.7 83 27-112 185-311 (702)
230 COG4301 Uncharacterized conser 94.2 1.4 3E-05 42.0 13.3 116 18-140 69-191 (321)
231 COG1041 Predicted DNA modifica 94.0 0.37 8E-06 48.0 9.7 118 13-143 183-311 (347)
232 PF07091 FmrO: Ribosomal RNA m 93.9 0.11 2.3E-06 49.5 5.5 109 31-149 106-215 (251)
233 TIGR00308 TRM1 tRNA(guanine-26 93.5 0.37 8.1E-06 48.8 9.0 100 31-141 45-146 (374)
234 KOG3045 Predicted RNA methylas 93.1 0.52 1.1E-05 45.2 8.6 97 18-145 171-267 (325)
235 COG0293 FtsJ 23S rRNA methylas 93.1 1.6 3.5E-05 40.5 11.7 47 19-66 33-80 (205)
236 COG1565 Uncharacterized conser 92.9 0.51 1.1E-05 47.2 8.6 58 23-80 70-133 (370)
237 KOG2651 rRNA adenine N-6-methy 92.8 0.24 5.2E-06 49.7 6.1 58 16-76 138-196 (476)
238 PRK01544 bifunctional N5-gluta 92.5 0.9 2E-05 48.0 10.5 109 28-142 345-462 (506)
239 COG0144 Sun tRNA and rRNA cyto 92.5 1.2 2.5E-05 45.0 10.8 111 31-144 157-290 (355)
240 PF02636 Methyltransf_28: Puta 91.4 0.37 8.1E-06 45.9 5.7 49 30-78 18-72 (252)
241 PF06962 rRNA_methylase: Putat 91.4 1.3 2.9E-05 38.6 8.5 97 58-160 1-111 (140)
242 KOG0024 Sorbitol dehydrogenase 91.4 1.8 3.8E-05 42.9 10.2 113 27-150 165-282 (354)
243 COG4262 Predicted spermidine s 91.0 1.2 2.7E-05 44.6 8.8 40 32-73 291-330 (508)
244 PHA01634 hypothetical protein 90.7 0.53 1.1E-05 40.4 5.1 48 28-78 26-73 (156)
245 KOG1331 Predicted methyltransf 90.6 0.21 4.5E-06 48.3 2.9 94 31-140 46-141 (293)
246 PRK11760 putative 23S rRNA C24 90.3 0.52 1.1E-05 47.1 5.5 111 30-159 211-323 (357)
247 KOG1501 Arginine N-methyltrans 89.9 0.6 1.3E-05 47.7 5.7 65 12-80 49-113 (636)
248 KOG2187 tRNA uracil-5-methyltr 89.6 0.44 9.6E-06 49.6 4.6 42 32-77 385-426 (534)
249 PF02475 Met_10: Met-10+ like- 89.5 0.69 1.5E-05 42.8 5.4 76 31-112 102-177 (200)
250 COG1063 Tdh Threonine dehydrog 89.4 4.9 0.00011 40.2 11.9 45 31-77 169-214 (350)
251 cd08283 FDH_like_1 Glutathione 88.4 7.1 0.00015 39.3 12.4 45 30-76 184-229 (386)
252 COG1889 NOP1 Fibrillarin-like 88.2 4.8 0.0001 37.4 9.7 102 30-142 76-180 (231)
253 PF04816 DUF633: Family of unk 88.1 1.5 3.2E-05 40.7 6.6 111 34-160 1-113 (205)
254 COG0116 Predicted N6-adenine-s 88.0 1.2 2.6E-05 45.1 6.3 85 25-112 185-307 (381)
255 PF01189 Nol1_Nop2_Fmu: NOL1/N 86.7 3 6.5E-05 40.6 8.2 49 31-80 86-134 (283)
256 TIGR00006 S-adenosyl-methyltra 86.3 6 0.00013 39.0 10.0 59 19-79 9-67 (305)
257 COG1189 Predicted rRNA methyla 85.0 1.6 3.5E-05 41.3 5.1 119 10-145 62-182 (245)
258 PF13578 Methyltransf_24: Meth 84.6 0.63 1.4E-05 37.8 2.0 97 35-140 1-103 (106)
259 COG2384 Predicted SAM-dependen 83.8 4.6 9.9E-05 37.9 7.4 110 33-160 19-132 (226)
260 PF05971 Methyltransf_10: Prot 83.5 3 6.5E-05 41.0 6.5 83 31-117 103-190 (299)
261 PF03141 Methyltransf_29: Puta 83.3 8.1 0.00018 40.5 9.7 110 32-159 367-479 (506)
262 PRK10742 putative methyltransf 82.9 4.5 9.7E-05 38.7 7.2 42 33-78 91-132 (250)
263 COG0275 Predicted S-adenosylme 81.8 7.9 0.00017 38.0 8.5 69 18-87 11-80 (314)
264 PRK09424 pntA NAD(P) transhydr 80.8 19 0.00041 38.1 11.7 43 30-75 164-207 (509)
265 PF11599 AviRa: RRNA methyltra 78.1 4.7 0.0001 37.8 5.4 61 17-77 34-98 (246)
266 PF01555 N6_N4_Mtase: DNA meth 78.0 3.4 7.3E-05 37.6 4.6 41 30-74 191-231 (231)
267 KOG4589 Cell division protein 77.4 4 8.7E-05 37.4 4.6 45 19-64 57-102 (232)
268 KOG2915 tRNA(1-methyladenosine 77.2 23 0.00049 34.5 9.8 101 32-143 107-211 (314)
269 PF03514 GRAS: GRAS domain fam 76.9 31 0.00068 35.0 11.6 130 30-159 110-261 (374)
270 KOG3115 Methyltransferase-like 76.6 3 6.5E-05 38.7 3.6 44 32-77 62-105 (249)
271 PF01861 DUF43: Protein of unk 74.2 13 0.00028 35.4 7.4 78 27-111 41-119 (243)
272 PRK11524 putative methyltransf 73.9 7.7 0.00017 37.6 6.1 46 29-78 207-252 (284)
273 TIGR00027 mthyl_TIGR00027 meth 73.1 73 0.0016 30.5 12.5 125 16-146 67-200 (260)
274 COG1064 AdhP Zn-dependent alco 72.9 29 0.00063 34.8 9.9 92 31-143 167-260 (339)
275 PF01488 Shikimate_DH: Shikima 72.6 12 0.00025 32.0 6.3 107 24-149 5-114 (135)
276 cd05213 NAD_bind_Glutamyl_tRNA 72.6 71 0.0015 31.3 12.6 111 18-149 165-278 (311)
277 KOG1269 SAM-dependent methyltr 72.5 11 0.00023 38.3 6.8 105 29-142 109-215 (364)
278 KOG4058 Uncharacterized conser 72.3 2.4 5.1E-05 37.4 1.8 41 32-75 74-114 (199)
279 PF05206 TRM13: Methyltransfer 70.9 11 0.00024 36.3 6.2 50 17-67 5-58 (259)
280 cd00315 Cyt_C5_DNA_methylase C 70.9 14 0.0003 35.8 7.0 69 33-113 2-71 (275)
281 COG2520 Predicted methyltransf 70.7 16 0.00036 36.5 7.6 104 31-145 189-292 (341)
282 COG0373 HemA Glutamyl-tRNA red 70.2 47 0.001 34.2 10.9 113 19-150 166-280 (414)
283 PRK01747 mnmC bifunctional tRN 69.8 24 0.00052 38.4 9.4 35 31-65 58-102 (662)
284 COG2521 Predicted archaeal met 69.7 11 0.00024 35.9 5.7 103 30-145 134-250 (287)
285 KOG2730 Methylase [General fun 67.9 8.6 0.00019 36.2 4.6 46 30-79 94-139 (263)
286 PF01795 Methyltransf_5: MraW 67.5 13 0.00028 36.8 6.0 59 19-79 9-67 (310)
287 KOG1709 Guanidinoacetate methy 67.2 97 0.0021 29.3 11.2 103 29-141 100-205 (271)
288 KOG2798 Putative trehalase [Ca 65.8 46 0.001 33.1 9.3 121 18-143 134-297 (369)
289 PF07757 AdoMet_MTase: Predict 65.4 16 0.00034 30.5 5.2 45 15-63 42-87 (112)
290 PRK13699 putative methylase; P 65.0 11 0.00025 35.3 4.9 45 30-78 163-207 (227)
291 KOG2352 Predicted spermine/spe 63.5 79 0.0017 33.1 11.0 103 32-143 50-162 (482)
292 KOG0821 Predicted ribosomal RN 62.8 21 0.00045 33.7 6.0 69 7-78 27-95 (326)
293 PLN00203 glutamyl-tRNA reducta 58.5 1.7E+02 0.0036 31.2 12.8 119 18-149 251-374 (519)
294 TIGR01809 Shik-DH-AROM shikima 57.5 44 0.00095 32.4 7.7 54 10-67 105-160 (282)
295 TIGR01035 hemA glutamyl-tRNA r 57.5 1.3E+02 0.0028 30.9 11.5 112 20-149 169-282 (417)
296 PRK12749 quinate/shikimate deh 55.3 51 0.0011 32.1 7.8 62 11-77 107-169 (288)
297 PRK00045 hemA glutamyl-tRNA re 54.9 1.8E+02 0.0038 29.9 12.1 114 18-149 169-285 (423)
298 PF05050 Methyltransf_21: Meth 54.8 23 0.00051 30.3 4.9 39 36-75 1-42 (167)
299 PLN02668 indole-3-acetate carb 53.4 18 0.00039 36.9 4.4 20 100-119 158-177 (386)
300 COG3129 Predicted SAM-dependen 53.2 26 0.00056 33.4 5.0 83 32-117 80-166 (292)
301 KOG1562 Spermidine synthase [A 53.1 48 0.001 32.7 6.9 125 30-159 121-253 (337)
302 COG4017 Uncharacterized protei 52.0 1.6E+02 0.0035 27.3 9.7 71 28-118 42-113 (254)
303 KOG2920 Predicted methyltransf 51.5 15 0.00032 35.7 3.3 39 28-69 114-152 (282)
304 cd05188 MDR Medium chain reduc 51.2 61 0.0013 29.7 7.4 62 8-75 115-177 (271)
305 PRK13940 glutamyl-tRNA reducta 50.8 57 0.0012 33.6 7.6 109 19-149 169-278 (414)
306 cd00401 AdoHcyase S-adenosyl-L 48.7 45 0.00098 34.4 6.5 67 5-74 175-243 (413)
307 KOG1596 Fibrillarin and relate 48.3 42 0.00091 32.2 5.6 35 32-67 158-192 (317)
308 TIGR01627 A_thal_3515 uncharac 46.7 86 0.0019 29.3 7.2 43 30-76 39-81 (225)
309 PF04989 CmcI: Cephalosporin h 46.6 40 0.00087 31.3 5.2 52 8-67 17-71 (206)
310 TIGR02356 adenyl_thiF thiazole 45.5 2.4E+02 0.0052 25.7 10.8 34 30-65 20-54 (202)
311 PF03492 Methyltransf_7: SAM d 44.7 24 0.00052 35.2 3.7 100 18-119 4-122 (334)
312 PRK09880 L-idonate 5-dehydroge 44.4 1.1E+02 0.0024 29.9 8.5 44 30-75 169-213 (343)
313 PRK08644 thiamine biosynthesis 43.4 2.7E+02 0.0058 25.7 10.3 33 31-65 28-61 (212)
314 COG1179 Dinucleotide-utilizing 43.0 54 0.0012 31.4 5.5 35 31-66 30-64 (263)
315 TIGR03366 HpnZ_proposed putati 42.6 1.1E+02 0.0024 29.1 7.8 44 30-75 120-164 (280)
316 PHA03108 poly(A) polymerase sm 42.1 49 0.0011 32.2 5.1 38 31-68 61-100 (300)
317 COG3315 O-Methyltransferase in 42.0 1.2E+02 0.0026 29.7 8.1 127 12-144 74-210 (297)
318 KOG1098 Putative SAM-dependent 40.6 37 0.00079 36.7 4.3 45 21-66 34-79 (780)
319 COG5379 BtaA S-adenosylmethion 39.7 48 0.001 32.7 4.7 48 31-82 64-111 (414)
320 KOG2918 Carboxymethyl transfer 38.4 4.2E+02 0.009 26.4 12.9 112 32-145 89-229 (335)
321 PF12692 Methyltransf_17: S-ad 36.8 2.2E+02 0.0048 25.3 7.9 53 9-64 8-60 (160)
322 cd08254 hydroxyacyl_CoA_DH 6-h 36.3 1.3E+02 0.0029 28.7 7.5 41 31-74 166-207 (338)
323 PF12242 Eno-Rase_NADH_b: NAD( 35.5 2E+02 0.0042 22.5 6.5 53 10-63 18-71 (78)
324 KOG1201 Hydroxysteroid 17-beta 34.3 3.7E+02 0.0079 26.6 9.8 49 28-77 35-83 (300)
325 TIGR00561 pntA NAD(P) transhyd 33.7 2.2E+02 0.0048 30.2 8.9 63 10-75 136-206 (511)
326 TIGR02818 adh_III_F_hyde S-(hy 32.9 1.7E+02 0.0038 29.0 7.8 43 31-75 186-229 (368)
327 PF01358 PARP_regulatory: Poly 32.8 61 0.0013 31.7 4.2 38 30-67 58-97 (294)
328 KOG2198 tRNA cytosine-5-methyl 32.7 25 0.00053 35.5 1.6 13 350-362 153-165 (375)
329 KOG2015 NEDD8-activating compl 32.5 2.3E+02 0.0049 28.5 8.0 32 32-65 41-73 (422)
330 PRK06153 hypothetical protein; 32.4 48 0.001 33.9 3.6 42 19-65 167-209 (393)
331 COG0286 HsdM Type I restrictio 32.1 80 0.0017 33.2 5.4 45 32-76 188-234 (489)
332 COG1568 Predicted methyltransf 31.5 1.8E+02 0.0039 28.6 7.0 94 9-110 104-227 (354)
333 PRK12549 shikimate 5-dehydroge 31.4 1.8E+02 0.0039 28.2 7.4 53 11-69 110-164 (284)
334 PLN02740 Alcohol dehydrogenase 31.0 1.2E+02 0.0026 30.3 6.4 43 31-75 199-242 (381)
335 TIGR03201 dearomat_had 6-hydro 30.5 2.4E+02 0.0052 27.6 8.3 42 31-75 167-209 (349)
336 TIGR02354 thiF_fam2 thiamine b 30.1 4.3E+02 0.0093 24.1 11.4 33 31-65 21-54 (200)
337 PF06859 Bin3: Bicoid-interact 30.1 18 0.0004 30.1 0.2 40 104-144 1-45 (110)
338 cd08237 ribitol-5-phosphate_DH 29.8 2.4E+02 0.0053 27.6 8.2 42 31-74 164-207 (341)
339 TIGR00936 ahcY adenosylhomocys 27.9 2E+02 0.0044 29.6 7.3 62 4-68 167-230 (406)
340 TIGR03451 mycoS_dep_FDH mycoth 27.2 1.6E+02 0.0035 29.0 6.4 43 31-75 177-220 (358)
341 COG1867 TRM1 N2,N2-dimethylgua 26.9 1.6E+02 0.0036 29.9 6.2 46 31-79 53-99 (380)
342 PLN02827 Alcohol dehydrogenase 26.9 2.1E+02 0.0045 28.6 7.2 44 30-75 193-237 (378)
343 KOG2018 Predicted dinucleotide 26.4 1.6E+02 0.0034 29.4 5.8 36 30-66 73-108 (430)
344 PF03721 UDPG_MGDP_dh_N: UDP-g 25.9 1.4E+02 0.0031 26.9 5.3 29 122-150 98-127 (185)
345 cd08239 THR_DH_like L-threonin 25.7 3.5E+02 0.0076 26.1 8.5 43 31-75 164-207 (339)
346 COG0686 Ald Alanine dehydrogen 25.5 3.2E+02 0.0069 27.4 7.7 102 27-141 164-267 (371)
347 TIGR01352 tonB_Cterm TonB fami 25.4 1.1E+02 0.0024 22.3 3.8 29 350-383 7-35 (74)
348 cd08301 alcohol_DH_plants Plan 25.4 2.5E+02 0.0053 27.7 7.4 44 30-75 187-231 (369)
349 cd01065 NAD_bind_Shikimate_DH 24.7 4.2E+02 0.0091 22.2 8.0 54 13-71 4-58 (155)
350 PRK12548 shikimate 5-dehydroge 24.1 2.4E+02 0.0052 27.3 6.8 52 11-66 109-160 (289)
351 cd08277 liver_alcohol_DH_like 24.1 3E+02 0.0065 27.1 7.7 44 30-75 184-228 (365)
352 COG0169 AroE Shikimate 5-dehyd 23.4 4.7E+02 0.01 25.5 8.6 45 30-77 125-171 (283)
353 PTZ00357 methyltransferase; Pr 22.7 4.7E+02 0.01 29.2 8.9 35 32-67 702-739 (1072)
354 cd08281 liver_ADH_like1 Zinc-d 22.2 2.8E+02 0.006 27.5 7.0 43 31-75 192-235 (371)
355 COG0677 WecC UDP-N-acetyl-D-ma 22.1 1E+02 0.0022 31.8 3.7 16 134-149 119-134 (436)
356 cd00755 YgdL_like Family of ac 20.9 1.6E+02 0.0034 27.8 4.6 33 32-65 12-44 (231)
357 PRK05476 S-adenosyl-L-homocyst 20.3 3.3E+02 0.0071 28.2 7.2 60 7-69 187-248 (425)
358 PRK00771 signal recognition pa 20.3 9.8E+02 0.021 24.8 13.5 124 30-158 94-228 (437)
No 1
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=100.00 E-value=5.2e-75 Score=560.45 Aligned_cols=270 Identities=43% Similarity=0.770 Sum_probs=234.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC
Q 015771 2 RLLLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD 81 (400)
Q Consensus 2 ~~l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~ 81 (400)
-|++++++.+|+++++||.||++|+|+|+|.+|||+|||||+++||+.+.|+ ...++++||.|+.|+++++.++++..+
T Consensus 5 aY~~~r~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~ 83 (274)
T PF09243_consen 5 AYLAARMPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPN 83 (274)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccc
Confidence 4899999999999999999999999999999999999999999999999999 788999999999999999999987543
Q ss_pred CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHHHH
Q 015771 82 LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHILW 161 (400)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~ 161 (400)
.... .....+.... ......||||++|+|+||++ ..|..++++||++..++|||||||||.||+.|++||++|+
T Consensus 84 ~~~~---~~~~~~~~~~-~~~~~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i~~aR~~l~- 157 (274)
T PF09243_consen 84 NRNA---EWRRVLYRDF-LPFPPDDLVIASYVLNELPS-AARAELVRSLWNKTAPVLVLVEPGTPAGFRRIAEARDQLL- 157 (274)
T ss_pred cccc---hhhhhhhccc-ccCCCCcEEEEehhhhcCCc-hHHHHHHHHHHHhccCcEEEEcCCChHHHHHHHHHHHHHh-
Confidence 2211 0011111111 12234599999999999998 8999999999999888999999999999999999999986
Q ss_pred HhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCCceeeeeeccCChhHHHhhhccCCCCCCcc
Q 015771 162 MEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGKYCHFVQRLQRTTSQRAYKRSKSEPLRGFE 241 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~wChF~qr~~rp~~~r~~~~~~g~~~~~~e 241 (400)
+.++||||||||++.|||....+||||+||++|+++++..| +.. .++|
T Consensus 158 ----------------------------~~~~~v~APCph~~~CP~~~~~~wChf~~r~~~~~~~~~~k---~~~-~~~e 205 (274)
T PF09243_consen 158 ----------------------------EKGAHVVAPCPHDGPCPLLASEDWCHFSQRVERSPFHRLAK---SAG-LPYE 205 (274)
T ss_pred ----------------------------hCCCceECCCccCCCCCCCCCCCcccceeeeccchhhhhcc---ccc-CCcc
Confidence 46899999999999999998779999999999999888766 222 4899
Q ss_pred ceeeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHHHHhhhhcccccccccccccccCcccccCcCCC
Q 015771 242 DEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDS 321 (400)
Q Consensus 242 d~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (400)
|+|||||+.+|+++.
T Consensus 206 ~ekfSYl~~~~~~~~----------------------------------------------------------------- 220 (274)
T PF09243_consen 206 DEKFSYLAKGRGPRA----------------------------------------------------------------- 220 (274)
T ss_pred ccceeeeeecccccc-----------------------------------------------------------------
Confidence 999999766665421
Q ss_pred cccccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhhccCCCCC
Q 015771 322 DKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLWP 399 (400)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDlwp 399 (400)
..|||||+||+||+|||+|||||| +|+|+|+|||||+| ++||+|||+.|||+||
T Consensus 221 -----------------~~~~Rii~~p~~~~~hv~~~~C~~------~G~l~~~~v~K~~g-~~y~~aRk~~wGD~~p 274 (274)
T PF09243_consen 221 -----------------PAWPRIIRPPLKRKGHVICDLCTP------DGQLERVVVTKRHG-ELYRCARKSKWGDLWP 274 (274)
T ss_pred -----------------cccchhcchhhccCCcEEEEEECC------CCCEEEEEEcccch-HHHHHHHhccccCCCC
Confidence 129999999999999999999998 99999999999888 8999999999999998
No 2
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-68 Score=508.84 Aligned_cols=310 Identities=27% Similarity=0.484 Sum_probs=234.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC
Q 015771 2 RLLLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD 81 (400)
Q Consensus 2 ~~l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~ 81 (400)
-||+++++++|++++++|++++++.|+|.|++|||+|.|||+++||++++|| ....++.++.|+.+.+++..+..+...
T Consensus 85 Ayias~lp~~Yasv~asL~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~P-dl~sa~ile~sp~lrkV~~tl~~nv~t 163 (484)
T COG5459 85 AYIASRLPQTYASVRASLDELQKRVPDFAPQSILDVGAGPGTGLWALNDIWP-DLKSAVILEASPALRKVGDTLAENVST 163 (484)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhCCCcCcchhhccCCCCchhhhhhcccCC-CchhhhhhccCHHHHHHHHHHHhhccc
Confidence 3899999999999999999999999999999999999999999999999998 467899999999999999888775421
Q ss_pred --CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHH
Q 015771 82 --LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRS 157 (400)
Q Consensus 82 --~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~ 157 (400)
.++..... ..+ .-.++ ....|+|||+.+-|.+..++......|+.||+. +||.|||||+|||.||++|.+||+
T Consensus 164 ~~td~r~s~v-t~d-Rl~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~ 240 (484)
T COG5459 164 EKTDWRASDV-TED-RLSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQ 240 (484)
T ss_pred ccCCCCCCcc-chh-ccCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHH
Confidence 11111100 001 01122 234566666666665555556667799999997 799999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCC----CCceeeeeeccCChhHHHhhhcc
Q 015771 158 HILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENS----GKYCHFVQRLQRTTSQRAYKRSK 233 (400)
Q Consensus 158 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~----~~wChF~qr~~rp~~~r~~~~~~ 233 (400)
++|..++.. .+ ....+||+|||||+++||++.. .+||||+|++.||+|-+.++.-.
T Consensus 241 ~ll~~~~~~---------------~e-----~~~~ahiiAPCPH~~~CPl~v~ng~~~~~C~F~q~v~rs~fs~~~~~Rl 300 (484)
T COG5459 241 ILLAPGNFP---------------DE-----FNYFAHIIAPCPHQRKCPLQVPNGKDLDWCHFSQRVARSKFSIELKKRL 300 (484)
T ss_pred HHhcCCCCc---------------cc-----cccceeeeccCCCCCCCCccCCCCccccccchhHhhccCcchhHHHHHH
Confidence 999644311 00 2456999999999999999754 38999999999999888776411
Q ss_pred CCCCCCccceeeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHH-HHhhhhcccccccccccccccCc
Q 015771 234 SEPLRGFEDEKFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDL-LRLQAEAEVEPCKKEDLVNYESD 312 (400)
Q Consensus 234 g~~~~~~ed~kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 312 (400)
- ....+...|+|++++|+-. .+|. .+ .++.+|++.+.
T Consensus 301 h--r~s~D~s~~~~~~lkr~~~--rp~e--------------------------~~~er~~~DE~~l~------------ 338 (484)
T COG5459 301 H--RTSKDGSQGNASRLKRRAG--RPWE--------------------------ILFERSHKDEKFLK------------ 338 (484)
T ss_pred H--hhhccccccchhhhhhccC--CChh--------------------------hhhhhccchHHHHH------------
Confidence 1 1234567899999998742 2231 11 11222221100
Q ss_pred ccccCcCCCcccccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhh
Q 015771 313 EVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKS 392 (400)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks 392 (400)
+..-+...+.+|||||+||+||+|||+||+|.+ +|++|+|+||||+||++||+||||
T Consensus 339 -----------------~~~v~~pt~~~wpRII~pP~kr~GhV~idlC~~------dg~le~~lvtKs~gk~~yrlARks 395 (484)
T COG5459 339 -----------------EAAVRRPTANSWPRIIAPPVKRKGHVMIDLCAP------DGELEEWLVTKSDGKQIYRLARKS 395 (484)
T ss_pred -----------------HHHhcCccccccchhcCCccCCCCeEEEeecCC------cchhhhhcccccccHHHHHHHHhh
Confidence 000111124579999999999999999999998 999999999999999999999999
Q ss_pred ccCCCCCC
Q 015771 393 LWGDLWPF 400 (400)
Q Consensus 393 ~wGDlwp~ 400 (400)
.||||||.
T Consensus 396 ~wGDlfas 403 (484)
T COG5459 396 DWGDLFAS 403 (484)
T ss_pred ccchhhhh
Confidence 99999984
No 3
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-51 Score=407.69 Aligned_cols=282 Identities=28% Similarity=0.508 Sum_probs=230.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--
Q 015771 2 RLLLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-- 79 (400)
Q Consensus 2 ~~l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-- 79 (400)
+|++.++.++|+.+.+++.|+..+.|.|+|..++|||+|.|...||+...|+.....|++||.|.+|+......+++.
T Consensus 172 ~~~~arld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~ 251 (491)
T KOG2539|consen 172 VYPLARLDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH 251 (491)
T ss_pred cccccccccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh
Confidence 477888999999999999999999999999999999999999999999999987899999999999999999988872
Q ss_pred CCCCceeechhhhHhhhhccc-CCCcccEEeecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCCCCchHHHHHH
Q 015771 80 KDLPLIHSYNSIQALNKDISK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGSSIISQM 155 (400)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~-~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gtp~Gf~~I~~a 155 (400)
.+.+.+... -.....++. ....|||||++|.|+++.+...|...++++|++ +|+++||||+|++.||+.+++|
T Consensus 252 ~g~~~v~~~---~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l~ea 328 (491)
T KOG2539|consen 252 IGEPIVRKL---VFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELLTEA 328 (491)
T ss_pred cCchhcccc---chhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhHHHH
Confidence 233333321 012223343 344599999999999999999999999999997 4679999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhccccccccccchhhhccCCcEEEccCCCCCCCCCCCCCC---ceeeeeeccCChhHHHhhhc
Q 015771 156 RSHILWMEKRKSRKYEARKSKDTNKETSKDLVTLRSGVHIVAPCPHEGRCPLENSGK---YCHFVQRLQRTTSQRAYKRS 232 (400)
Q Consensus 156 R~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvAPCpH~~~CPl~~~~~---wChF~qr~~rp~~~r~~~~~ 232 (400)
|+.+|..+.. .++ ....++|||||||+..||++..+. .|+|++++++-+.
T Consensus 329 R~~~l~~~~~------------------vd~--~~~~~~vlapcPh~l~cPl~~d~~~~~~C~f~~~~~~l~~------- 381 (491)
T KOG2539|consen 329 RQNLLDQEEE------------------VDY--EDVTGPVLAPCPHDLRCPLLRDSAVIIVCTFDARYRPLPK------- 381 (491)
T ss_pred HHhcccchhc------------------CCc--cccccceecCCCcccCCccccCCCcccccccchhcccccc-------
Confidence 9999864320 001 234589999999999999976433 6999999997441
Q ss_pred cCCCCCCccce---eeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHHHHhhhhcccccccccccccc
Q 015771 233 KSEPLRGFEDE---KFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNY 309 (400)
Q Consensus 233 ~g~~~~~~ed~---kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
.|..+ .++.. +|||+|+-||.+..
T Consensus 382 s~~~~-~~e~~r~~~~sy~I~e~s~~~~---------------------------------------------------- 408 (491)
T KOG2539|consen 382 SGGKL-EDEEDRKSAYSYLILEESSRQS---------------------------------------------------- 408 (491)
T ss_pred CCCcC-chhhhhhhhhHHHHHhhccccc----------------------------------------------------
Confidence 12222 22222 48888888876421
Q ss_pred cCcccccCcCCCcccccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCc-hhhhh
Q 015771 310 ESDEVQDDTVDSDKDQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNP-TLHRL 388 (400)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~-~~Y~~ 388 (400)
+.+|||||+||+||+|||+|||||| +|.++|||+|||+++ .+|.+
T Consensus 409 ----------------------------~~~wpRIi~p~~kr~~hv~~dlC~p------~g~~q~~~~Tkskhg~dlys~ 454 (491)
T KOG2539|consen 409 ----------------------------TSSWPRIIKPPLKRGGHVTCDLCTP------NGPLQRRVLTKSKHGKDLYSC 454 (491)
T ss_pred ----------------------------cCCCcccccCccccCCeeEEecCCC------CCCeeEEEEecccccHHHHHH
Confidence 1369999999999999999999998 899999999998876 69999
Q ss_pred hhhhccCCCCCC
Q 015771 389 AKKSLWGDLWPF 400 (400)
Q Consensus 389 ARks~wGDlwp~ 400 (400)
|||+.|||||||
T Consensus 455 ar~s~wgdl~pl 466 (491)
T KOG2539|consen 455 ARKSRWGDLLPL 466 (491)
T ss_pred hhhhhccccccc
Confidence 999999999996
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=5.9e-12 Score=118.64 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=88.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||||-.+..+++..+ ..+++++|.|+.|++.|++.+.+.. ++.++... ...+|.++++||+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~d------Ae~LPf~D~sFD~ 122 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGD------AENLPFPDNSFDA 122 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC--CceEEEEECCHHHHHHHHHHhhccCccceEEEEec------hhhCCCCCCccCE
Confidence 578999999999999999998876 5799999999999999999998643 23333322 2357888999999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchH
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~ 150 (400)
|+++|.|.++++....+.-+.+.+ +|||.++++|-+.|...-
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVl-KpgG~~~vle~~~p~~~~ 164 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVL-KPGGRLLVLEFSKPDNPV 164 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhh-cCCeEEEEEEcCCCCchh
Confidence 999999999986654444444444 389999999999987653
No 5
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=9.4e-15 Score=146.19 Aligned_cols=286 Identities=18% Similarity=0.169 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhh
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 91 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~ 91 (400)
...-++.+.+..+. |.+.+...||+|.|+++.+|+-...|+-....+--+.+|..|...+...+..
T Consensus 107 i~~~~r~v~~~~~~-~~i~e~~sld~~~~~~s~~~~~~~~~~i~~~~~~~iy~s~~~~~t~~~s~~~------------- 172 (491)
T KOG2539|consen 107 ISNKSRHVIEKGKG-PGIDELASLDVFPGTVSKVEENKFLKEIIYDLHKNIYPSQSLEYTSPESLNV------------- 172 (491)
T ss_pred HhHHHHHHHHHhcC-CCCCCccccccCCCchhhhhhhhHHHHHHHHHhccccccccccccCcccccc-------------
Confidence 33344455554444 7788899999999999988885555432112222333443332211111000
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCCCCchHHHHHHHHHHHHHhhhhhh
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGSSIISQMRSHILWMEKRKSR 168 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gtp~Gf~~I~~aR~~lL~~~~~~~~ 168 (400)
+. +......|-+|+.++.+.+..+++.+-.++..+|.- .++.+++++++|-.+|..|.+.|.++...+.- .
T Consensus 173 --~~--~arld~gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~--l 246 (491)
T KOG2539|consen 173 --YP--LARLDHGYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKN--L 246 (491)
T ss_pred --cc--ccccccchHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHh--h
Confidence 00 011223455555555555553344444455555543 23455556666666666666666665532210 0
Q ss_pred hhhhhccccccccccchhhhccCCcEEEcc-CCCCCCCCCCCCC----CceeeeeeccCChhHHHhhhccCCCCCCccce
Q 015771 169 KYEARKSKDTNKETSKDLVTLRSGVHIVAP-CPHEGRCPLENSG----KYCHFVQRLQRTTSQRAYKRSKSEPLRGFEDE 243 (400)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvAP-CpH~~~CPl~~~~----~wChF~qr~~rp~~~r~~~~~~g~~~~~~ed~ 243 (400)
+ + + ...|.+++++ |+|.+.||...+. ..|+|.+-..-.++.|..-... . -+...-.
T Consensus 247 r-------~-----~-----~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s-~-~r~~~r~ 307 (491)
T KOG2539|consen 247 R-------D-----G-----SHIGEPIVRKLVFHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPES-L-WRKTDRS 307 (491)
T ss_pred c-------C-----h-----hhcCchhccccchhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHH-H-HHhccCC
Confidence 0 0 0 1356899999 9999999987653 3788887544333433211000 0 0011223
Q ss_pred eeEEEEEEecCCCCCCCCCCCccchhhhhhhccCCCccccccHHHHHHhhhhcccccccccccccccCcccccCcCCCcc
Q 015771 244 KFSFVAFRRGERPRERWPLDGMKFDTLKEQHAKRNPEDLEIDYEDLLRLQAEAEVEPCKKEDLVNYESDEVQDDTVDSDK 323 (400)
Q Consensus 244 kfSYvvlrkg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (400)
.|+||+|.+|.. ++++.++++..-.-+++.++|| +. .
T Consensus 308 g~~lViIe~g~~---------~g~e~l~eaR~~~l~~~~~vd~-----------------------~~-~---------- 344 (491)
T KOG2539|consen 308 GYFLVIIEKGTT---------MGLELLTEARQNLLDQEEEVDY-----------------------ED-V---------- 344 (491)
T ss_pred CceEEEEecCCc---------cchhhHHHHHHhcccchhcCCc-----------------------cc-c----------
Confidence 678888888853 3344444321100011111111 00 0
Q ss_pred cccccccccccccCCCCccccccCccccCCceEEeeccCCCCCCCCCceeEEEEeccCCchhhhhhhhhccCCCC
Q 015771 324 DQEKGEEETIPADLGGGWGRIIFSPVRRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNPTLHRLAKKSLWGDLW 398 (400)
Q Consensus 324 ~~~~~~~~~~~~~~~~~wpRii~pP~kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~~~Y~~ARks~wGDlw 398 (400)
-.... -.||+.+.+|+++.+||+. +|+- +-.+++ +++|.++.+|+.+||+.|+++.
T Consensus 345 ------~~~vl----apcPh~l~cPl~~d~~~~~-~C~f------~~~~~~--l~~s~~~~~~e~~r~~~~sy~I 400 (491)
T KOG2539|consen 345 ------TGPVL----APCPHDLRCPLLRDSAVII-VCTF------DARYRP--LPKSGGKLEDEEDRKSAYSYLI 400 (491)
T ss_pred ------cccee----cCCCcccCCccccCCCccc-cccc------chhccc--cccCCCcCchhhhhhhhhHHHH
Confidence 00111 2599999999999999999 9995 777888 9999999999999999999875
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.40 E-value=3.9e-13 Score=126.98 Aligned_cols=136 Identities=18% Similarity=0.206 Sum_probs=75.2
Q ss_pred HHHHHHHhHHHHHHHHHH---------HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHH
Q 015771 4 LLMLLLECLLFTLLVTES---------FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 74 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~e---------l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ 74 (400)
|+......|..+.++++- +.+.+..-.+.+|||+|||||..+..++...+ ...+|+++|.|+.|++.|++
T Consensus 12 ~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~-~~~~v~~vD~s~~ML~~a~~ 90 (233)
T PF01209_consen 12 MFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVG-PNGKVVGVDISPGMLEVARK 90 (233)
T ss_dssp -------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCC-CccEEEEecCCHHHHHHHHH
Confidence 444455566555554432 12222233557999999999999988876654 34689999999999999999
Q ss_pred hhcCCC--CCCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCch
Q 015771 75 LMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 75 ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf 149 (400)
.+.... ++.++.. + ...+|..+++||+|+++|.|.++++... .++++.+ +|||.++|+|.+.|...
T Consensus 91 k~~~~~~~~i~~v~~-----d-a~~lp~~d~sfD~v~~~fglrn~~d~~~---~l~E~~RVLkPGG~l~ile~~~p~~~ 160 (233)
T PF01209_consen 91 KLKREGLQNIEFVQG-----D-AEDLPFPDNSFDAVTCSFGLRNFPDRER---ALREMYRVLKPGGRLVILEFSKPRNP 160 (233)
T ss_dssp HHHHTT--SEEEEE------B-TTB--S-TT-EEEEEEES-GGG-SSHHH---HHHHHHHHEEEEEEEEEEEEEB-SSH
T ss_pred HHHhhCCCCeeEEEc-----C-HHHhcCCCCceeEEEHHhhHHhhCCHHH---HHHHHHHHcCCCeEEEEeeccCCCCc
Confidence 886532 2222222 1 2245667789999999999999987544 4555554 38999999999999864
No 7
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.39 E-value=8e-12 Score=119.05 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=98.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--
Q 015771 4 LLMLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-- 81 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-- 81 (400)
|+..+.+.|..+..++..+..+... ...+|||+|||+|..+..++........+++++|+|+.|++.|+..+.....
T Consensus 31 ~~~~~~p~y~~~~~~~~~~~~~~~~-~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~ 109 (247)
T PRK15451 31 MIQRSVPGYSNIISMIGMLAERFVQ-PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPT 109 (247)
T ss_pred HHHhcCCChHHHHHHHHHHHHHhCC-CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence 5667788999999988887665432 3479999999999988877764322346899999999999999998865321
Q ss_pred -CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCc
Q 015771 82 -LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQG 148 (400)
Q Consensus 82 -~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~G 148 (400)
+.++. .++. .++ ...+|+|+++++|++++ ..++..+++++.+. |||.|++.|.-.+.+
T Consensus 110 ~v~~~~-----~d~~-~~~--~~~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~ 170 (247)
T PRK15451 110 PVDVIE-----GDIR-DIA--IENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFED 170 (247)
T ss_pred CeEEEe-----CChh-hCC--CCCCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCCCc
Confidence 22221 1122 122 23599999999999997 55677788888764 899999998654443
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.37 E-value=3.8e-12 Score=105.44 Aligned_cols=105 Identities=24% Similarity=0.274 Sum_probs=76.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
+.+|||+|||+|..+.++++.++ ..++++||.|++|++.+++.+... .++.+++. ++ ........+||+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~-----d~-~~~~~~~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFP--GARVVGVDISPEMLEIARERAAEEGLSDRITFVQG-----DA-EFDPDFLEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES-----CC-HGGTTTSSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC-----cc-ccCcccCCCCCE
Confidence 47999999999999999888665 467999999999999999998322 22333332 22 111223457999
Q ss_pred Eeecc-cccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 108 VIASY-VLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 108 Vias~-~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|++.. +++.+....++..+++++++. |||.|||.++
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999 677665456777888888775 8999998753
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.32 E-value=6e-11 Score=114.02 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=82.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC-----CCCCCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG-----PKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.+.+|||+|||+|..+..+++.++ ...+|+++|+|++|++.|++.... ..++.++.. +.. .++...++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~-~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~-----d~~-~lp~~~~s 145 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVG-SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG-----DAT-DLPFDDCY 145 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc-----ccc-cCCCCCCC
Confidence 357999999999998887776654 235899999999999999876531 112222221 121 34555678
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
||+|+++++|+++++...-..-+.+++ +|||.|+++|...+... .+....++++
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvL-kpGG~l~i~d~~~~~~~-~~~~~~~~~~ 199 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVL-KPGSRVSILDFNKSTQP-FTTSMQEWMI 199 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHc-CcCcEEEEEECCCCCcH-HHHHHHHHHH
Confidence 999999999999986544333333444 38999999999877642 2334444443
No 10
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.31 E-value=5.5e-11 Score=112.51 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=93.2
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCc
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPL 84 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~ 84 (400)
..+.|..+...+..+.++... ...+|||+|||+|..+..+...+.....+++++|+|+.|++.|+..+..... +.+
T Consensus 32 ~~p~y~~~~~~~~~l~~~~~~-~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~ 110 (239)
T TIGR00740 32 SVPGYSNIITAIGMLAERFVT-PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEI 110 (239)
T ss_pred cCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEE
Confidence 345677887878777766532 3468999999999999888876543357899999999999999998765321 122
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+. .++. .++ ...+|+|+++++|++++ ..++..+++++.+. +||.|++.|+-.
T Consensus 111 ~~-----~d~~-~~~--~~~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 111 LC-----NDIR-HVE--IKNASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred EE-----CChh-hCC--CCCCCEEeeecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 22 1222 122 23589999999999996 55677788887764 899999998744
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=5.6e-11 Score=113.65 Aligned_cols=119 Identities=22% Similarity=0.262 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhh
Q 015771 15 TLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSI 91 (400)
Q Consensus 15 ~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~ 91 (400)
+.+.+.++...++ -.+.+|||+|||+|..+..++.. ..+|+++|+|+.|++.|++.+.... ++.++... .
T Consensus 30 ~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~----g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d--~ 102 (255)
T PRK11036 30 LWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL----GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCA--A 102 (255)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcC--H
Confidence 4455666666665 35679999999999988887742 4689999999999999998876532 12222211 1
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
.++. +...++||+|++..+|+++.++......+.++++ |||.|+++...
T Consensus 103 ~~l~---~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 103 QDIA---QHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN 151 (255)
T ss_pred HHHh---hhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence 1221 1234689999999999999876554445555553 89999987553
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.24 E-value=2e-10 Score=107.80 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=78.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..+++.++ ...+|+++|.|+.|++.++..+.... ++..+.. +.. .++...++||+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~-----d~~-~~~~~~~~fD~ 117 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVG-PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG-----NAM-ELPFDDNSFDY 117 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe-----chh-cCCCCCCCccE
Confidence 357999999999999998887764 24589999999999999998875432 1212211 121 12334568999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
|+++++++++++.......+.+++ ++||.+++++.+.|..
T Consensus 118 V~~~~~l~~~~~~~~~l~~~~~~L-k~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 118 VTIGFGLRNVPDYMQVLREMYRVV-KPGGKVVCLETSQPTI 157 (231)
T ss_pred EEEecccccCCCHHHHHHHHHHHc-CcCeEEEEEECCCCCC
Confidence 999999999886654333333333 3899999999887653
No 13
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.20 E-value=2.6e-10 Score=105.71 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=81.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
++.+|||+|||+|..+..+...++ ..++++||+|+.|++.|+..+.+ ...... ++.. +...++||+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~--~~~v~giDiS~~~l~~A~~~~~~---~~~~~~-----d~~~--~~~~~sfD~V~ 110 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLP--FKHIYGVEINEYAVEKAKAYLPN---INIIQG-----SLFD--PFKDNFFDLVL 110 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCC--CCeEEEEECCHHHHHHHHhhCCC---CcEEEe-----eccC--CCCCCCEEEEE
Confidence 357899999999999988887664 35899999999999999876532 222221 1221 33467899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+..+|++++ +.....+++++.+..+++++|.|.-.|..
T Consensus 111 ~~~vL~hl~-p~~~~~~l~el~r~~~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 111 TKGVLIHIN-PDNLPTAYRELYRCSNRYILIAEYYNPSP 148 (204)
T ss_pred ECChhhhCC-HHHHHHHHHHHHhhcCcEEEEEEeeCCCc
Confidence 999999996 67788999999987788999988754443
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.20 E-value=1.9e-10 Score=109.95 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=80.9
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
.+..+...++...+.+|||+|||+|..+..+...++ ..+|+++|+|+.|++.|+.. ++.++.. ++. .
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p--~~~v~gvD~s~~~~~~a~~~-----~~~~~~~-----d~~-~ 83 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWP--GAVIEALDSSPEMVAAARER-----GVDARTG-----DVR-D 83 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHhc-----CCcEEEc-----Chh-h
Confidence 345555566555668999999999999998888775 35899999999999998752 2333322 222 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+. ..++||+|+++++|+++++......-+.+++ +|||.|++..++.
T Consensus 84 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~L-kpgG~l~~~~~~~ 129 (255)
T PRK14103 84 WK-PKPDTDVVVSNAALQWVPEHADLLVRWVDEL-APGSWIAVQVPGN 129 (255)
T ss_pred CC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhC-CCCcEEEEEcCCC
Confidence 22 3468999999999999987654444444444 3899999987764
No 15
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.19 E-value=1.5e-10 Score=106.52 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=76.6
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
..++.+.+....+.+|||+|||+|..+..+++ ...+|+++|.|+.|++.++.++... ++. +... ..++. ..
T Consensus 19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~----~g~~V~~iD~s~~~l~~a~~~~~~~-~~~-v~~~--~~d~~-~~ 89 (195)
T TIGR00477 19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSL----AGYDVRAWDHNPASIASVLDMKARE-NLP-LRTD--AYDIN-AA 89 (195)
T ss_pred hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHHHh-CCC-ceeE--eccch-hc
Confidence 33444445555678999999999998887774 2358999999999999988876532 222 1110 11221 11
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
+ ..++||+|+++.++++++ ...+..+++++.+ ++||++++++
T Consensus 90 ~-~~~~fD~I~~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 90 A-LNEDYDFIFSTVVFMFLQ-AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred c-ccCCCCEEEEecccccCC-HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2 235799999999999885 4455666666655 3899977774
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.18 E-value=2.5e-10 Score=105.13 Aligned_cols=112 Identities=16% Similarity=0.204 Sum_probs=76.6
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
++...++...+.+|||+|||+|..+..+++ ...+|+++|.|+.|++.++.++... ++..+... ..++.. .+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~----~g~~V~gvD~S~~~i~~a~~~~~~~-~~~~v~~~--~~d~~~-~~- 91 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGFDVTAWDKNPMSIANLERIKAAE-NLDNLHTA--VVDLNN-LT- 91 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHH----CCCEEEEEeCCHHHHHHHHHHHHHc-CCCcceEE--ecChhh-CC-
Confidence 334444444568999999999998887774 2458999999999999999877643 22211110 112221 22
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
..++||+|++++++++++ ...+..+++++.+. +||++++++
T Consensus 92 ~~~~fD~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 92 FDGEYDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCCCcCEEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 235799999999999885 55666777776654 899987764
No 17
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.14 E-value=5.8e-10 Score=110.13 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=77.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+.+.+|||+|||+|..+..++. ...+|++||.|++|++.|+..+.... ++.++.. +.. .++...++|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~----~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~-----dae-~l~~~~~~F 199 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLAR----MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT-----TAE-KLADEGRKF 199 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHH----cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec-----CHH-HhhhccCCC
Confidence 3456999999999998877763 24589999999999999987654221 2222221 111 233345689
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|+|++..+|+++++....+..+.++++ |||.++|....
T Consensus 200 D~Vi~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~n 237 (322)
T PLN02396 200 DAVLSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTIN 237 (322)
T ss_pred CEEEEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999988777777777764 89999988763
No 18
>PRK05785 hypothetical protein; Provisional
Probab=99.13 E-value=1.3e-09 Score=102.55 Aligned_cols=101 Identities=18% Similarity=0.321 Sum_probs=74.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+|||||..+..+.+.. ..+++++|.|++|++.|+... ..+.. +.. .++..+++||+|++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~---~~~v~gvD~S~~Ml~~a~~~~------~~~~~-----d~~-~lp~~d~sfD~v~~ 116 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF---KYYVVALDYAENMLKMNLVAD------DKVVG-----SFE-ALPFRDKSFDVVMS 116 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc---CCEEEEECCCHHHHHHHHhcc------ceEEe-----chh-hCCCCCCCEEEEEe
Confidence 5799999999999988887654 258999999999999987642 11221 111 34556789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
+++|+++++......-+.++++ + .++++|.++|.+.
T Consensus 117 ~~~l~~~~d~~~~l~e~~RvLk-p--~~~ile~~~p~~~ 152 (226)
T PRK05785 117 SFALHASDNIEKVIAEFTRVSR-K--QVGFIAMGKPDNV 152 (226)
T ss_pred cChhhccCCHHHHHHHHHHHhc-C--ceEEEEeCCCCcH
Confidence 9999998876655555555554 3 4667888888754
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.12 E-value=1.9e-10 Score=101.11 Aligned_cols=106 Identities=21% Similarity=0.362 Sum_probs=74.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhccc-CCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISK-SEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~DL 107 (400)
..+|||+|||+|..+..+++... ...++++||.|+.|++.|+.+++... ++.+... ++.. ++. ..+.||+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~-~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~-----d~~~-l~~~~~~~~D~ 76 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELN-PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG-----DIED-LPQELEEKFDI 76 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHST-TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES-----BTTC-GCGCSSTTEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcC-CCCEEEEEECcHHHHHHhhcccccccccccceEEe-----ehhc-cccccCCCeeE
Confidence 47999999999999999885432 24689999999999999999876432 2222222 2322 321 1168999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|++..+++.+.+...-...+.++++ ++|.++++++.
T Consensus 77 I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 9999999888755444444444443 69999999886
No 20
>PRK06202 hypothetical protein; Provisional
Probab=99.12 E-value=1.8e-09 Score=101.67 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=76.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
++.+|||+|||+|..+..++...+. ...+|+++|+|++|++.|+...... ++.+.... . ..++...++||+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~-----~-~~l~~~~~~fD~ 132 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-GVTFRQAV-----S-DELVAEGERFDV 132 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-CCeEEEEe-----c-ccccccCCCccE
Confidence 4579999999999988777654421 1248999999999999998875432 33322211 1 112224568999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
|+++++|+++++ .+...+++++.+...|.+++.+...+
T Consensus 133 V~~~~~lhh~~d-~~~~~~l~~~~r~~~~~~~i~dl~~~ 170 (232)
T PRK06202 133 VTSNHFLHHLDD-AEVVRLLADSAALARRLVLHNDLIRS 170 (232)
T ss_pred EEECCeeecCCh-HHHHHHHHHHHHhcCeeEEEeccccC
Confidence 999999999974 34567888888766677777776555
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.11 E-value=3.3e-10 Score=90.07 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=66.7
Q ss_pred EEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecccc
Q 015771 35 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114 (400)
Q Consensus 35 LDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L 114 (400)
||+|||+|..+..+.+. ...+|+++|+|++|++.+++...... ..+... +. ..++.+.++||+|++.+++
T Consensus 1 LdiG~G~G~~~~~l~~~---~~~~v~~~D~~~~~~~~~~~~~~~~~-~~~~~~-----d~-~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GGASVTGIDISEEMLEQARKRLKNEG-VSFRQG-----DA-EDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TTCEEEEEES-HHHHHHHHHHTTTST-EEEEES-----BT-TSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc---cCCEEEEEeCCHHHHHHHHhcccccC-chheee-----hH-HhCccccccccccccccce
Confidence 89999999999888865 25799999999999999999886532 222221 12 2345667899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 115 GEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 115 ~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
++++ ++..+++++++. +||.++|
T Consensus 71 ~~~~---~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHLE---DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGSS---HHHHHHHHHHHHEEEEEEEEE
T ss_pred eecc---CHHHHHHHHHHHcCcCeEEeC
Confidence 9994 455666666653 8999986
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.11 E-value=1e-09 Score=109.53 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=76.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
-.+.+|||+|||+|..+..+++.++ .+|++||.|+.|++.++.+.+.......+.. ...+.. .++...+.||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g---~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~--~~~D~~-~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG---ANVKGITLSPVQAARANALAAAQGLSDKVSF--QVADAL-NQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEE--EEcCcc-cCCCCCCCccEE
Confidence 3457999999999999888887653 5899999999999999988754321111110 011221 234456789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
++..+++++++...-..-+.+++ +|||.|+|++..
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvL-kpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVA-APGGRIIIVTWC 225 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHc-CCCcEEEEEEec
Confidence 99999999986544344444444 389999998753
No 23
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.10 E-value=3.3e-09 Score=101.01 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
..+.++++.-.+.+|||+|||+|..+..+.. ...+++++|.|+.|++.++..... ..++.. ++. .++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~~D~s~~~l~~a~~~~~~---~~~~~~-----d~~-~~~ 98 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRE----RGSQVTALDLSPPMLAQARQKDAA---DHYLAG-----DIE-SLP 98 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHH----cCCeEEEEECCHHHHHHHHhhCCC---CCEEEc-----Ccc-cCc
Confidence 3445555544567999999999988776664 246899999999999999886532 122221 222 233
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
...++||+|+++.++++.++......-+.++++ +||.|++...+..
T Consensus 99 ~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~ 144 (251)
T PRK10258 99 LATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQG 144 (251)
T ss_pred CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCC
Confidence 345689999999999998776554444444553 7999999987653
No 24
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.09 E-value=4.9e-10 Score=102.52 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=87.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
-..+|..++|.-.+.+|.|+|||||..+-.+.+.||. ..++++|.|++|++.|+..+.+... .. .++..-
T Consensus 18 Pa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f---~~-----aDl~~w 87 (257)
T COG4106 18 PARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATF---EE-----ADLRTW 87 (257)
T ss_pred cHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCce---ec-----ccHhhc
Confidence 3556777788778899999999999999999999984 6899999999999999887765322 11 223321
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
.+....||++++-+|++|++.. +++.+|+.. |||.|.+--|++-.
T Consensus 88 --~p~~~~dllfaNAvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 88 --KPEQPTDLLFANAVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred --CCCCccchhhhhhhhhhccccH---HHHHHHHHhhCCCceEEEECCCccC
Confidence 1356799999999999999754 455555554 89999988776543
No 25
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.08 E-value=2.7e-09 Score=99.72 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=78.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+....+ ..+++++|+|+.|++.++..+.. ++.++.. ++. ..+...++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~--~~~~~~~-----d~~-~~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFP--QAEFIALDISAGMLAQAKTKLSE--NVQFICG-----DAE-KLPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCC--CCcEEEEeChHHHHHHHHHhcCC--CCeEEec-----chh-hCCCCCCceeEE
Confidence 4567999999999998888887765 35699999999999998887652 3333222 222 223345689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
+++++|+++.+.......+.++++ +||.+++.+++..
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~ 139 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPG 139 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCcc
Confidence 999999999776655556666664 7999999987654
No 26
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.07 E-value=6.5e-10 Score=101.08 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=80.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.++||+|||.|.++-.++. ....++++|.|+..++.|++.+.+..++.+... ++... .+.++|||||++
T Consensus 45 ~~alEvGCs~G~lT~~LA~----rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~-----dvp~~--~P~~~FDLIV~S 113 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAP----RCDRLLAVDISPRALARARERLAGLPHVEWIQA-----DVPEF--WPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEE--TTSHHHHHHGG----GEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES------TTT-----SS-EEEEEEE
T ss_pred ceeEecCCCccHHHHHHHH----hhCceEEEeCCHHHHHHHHHhcCCCCCeEEEEC-----cCCCC--CCCCCeeEEEEe
Confidence 6899999999999988884 456899999999999999999987655443332 23322 246799999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC--------CCCCchHHHHHH
Q 015771 112 YVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP--------GTPQGSSIISQM 155 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~--------Gtp~Gf~~I~~a 155 (400)
-++.+|.+.++...++.++... |||.||+--. |++.|-+.|.++
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~ 167 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEM 167 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHH
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHH
Confidence 9999998777788888998886 8999998743 677787777443
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.07 E-value=5.9e-10 Score=104.00 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=76.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
+...+|||+|||-|.++..++. ....|+++|.|+.+++.|+....... .+.+.. ...+++. ...++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr----~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~--~~~edl~----~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLAR----LGASVTGIDASEKPIEVAKLHALESGVNIDYRQ--ATVEDLA----SAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHH----CCCeeEEecCChHHHHHHHHhhhhccccccchh--hhHHHHH----hcCCCccE
Confidence 4568999999999988877773 45799999999999999997765432 111221 1122332 23379999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|+|..||.+++++..-.....+|.+ |||.+++....
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STin 163 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTIN 163 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccc
Confidence 9999999999988765555555553 89999988664
No 28
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.07 E-value=2.8e-09 Score=102.58 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=75.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..+..++..+ ..+|+++|.|+.|++.|+..+....++.+... ++. ..+.+.++||+|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~---~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~-----D~~-~~~~~~~~FD~V~ 122 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKY---GAHVHGVDICEKMVNIAKLRNSDKNKIEFEAN-----DIL-KKDFPENTFDMIY 122 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhc---CCEEEEEECCHHHHHHHHHHcCcCCceEEEEC-----Ccc-cCCCCCCCeEEEE
Confidence 34799999999999877766544 25899999999999999987654222222211 121 2233457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+..++.+++ ..++..+++++.+. |||.|++.+...
T Consensus 123 s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 123 SRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999888875 34566667666653 899999998754
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.06 E-value=3.4e-09 Score=101.22 Aligned_cols=113 Identities=21% Similarity=0.357 Sum_probs=77.8
Q ss_pred HHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~ 99 (400)
.++...++.-.+.+|||+|||+|..+..+++.++ ..+++++|+|+.|++.++..+.+ +.++.. ++. .+.
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~~v~gvD~s~~~i~~a~~~~~~---~~~~~~-----d~~-~~~ 89 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWP--AARITGIDSSPAMLAEARSRLPD---CQFVEA-----DIA-SWQ 89 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHhCCC---CeEEEC-----chh-ccC
Confidence 3444444444567999999999999888887765 35899999999999999887542 222221 122 111
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
...+||+|+++++|+++++......-+.++++ +||.+++.-+++
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~ 133 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDN 133 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCC
Confidence 23589999999999999865443333444442 799999875554
No 30
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.06 E-value=1.3e-09 Score=106.18 Aligned_cols=104 Identities=21% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..++. ...+|+++|.|+.|++.+++.+... ++. +... ..++.. .. ..++||+|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~----~g~~V~avD~s~~ai~~~~~~~~~~-~l~-v~~~--~~D~~~-~~-~~~~fD~I 188 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKE-NLN-IRTG--LYDINS-AS-IQEEYDFI 188 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHHc-CCc-eEEE--Eechhc-cc-ccCCccEE
Confidence 4567999999999998888774 2368999999999999998877643 221 1110 112221 11 25689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++..+|++++ ...+..+++++.+. +||++++++.
T Consensus 189 ~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 189 LSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred EEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999986 55666777777654 8999888754
No 31
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.06 E-value=1.8e-11 Score=99.62 Aligned_cols=97 Identities=26% Similarity=0.315 Sum_probs=54.1
Q ss_pred EEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecccc
Q 015771 35 LDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVL 114 (400)
Q Consensus 35 LDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L 114 (400)
||+|||+|..+..+.+.++ ..+|+++|+|+.|++.+++.+............ ............++||+|+++++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~--~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP--DARYTGVDISPSMLERARERLAELGNDNFERLR--FDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE----SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEE--eecCChhhcccccccceehhhhhH
Confidence 8999999999988887774 579999999999998777766543321111100 000110001122589999999999
Q ss_pred cCCCCHHHHHHHHHHHHhc--cCCeE
Q 015771 115 GEVPSLQDRITIVRQLWDL--TRDVL 138 (400)
Q Consensus 115 ~eL~~~~~r~~~i~~Lw~~--~gG~L 138 (400)
+++++. ..+++++.+. |||.|
T Consensus 77 ~~l~~~---~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDI---EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-H---HHHHHHHTTT-TSS-EE
T ss_pred hhhhhH---HHHHHHHHHHcCCCCCC
Confidence 999544 3555555543 78876
No 32
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=6.2e-10 Score=101.14 Aligned_cols=119 Identities=19% Similarity=0.388 Sum_probs=85.1
Q ss_pred CeEEEEccchhHHHHHHHHHCC-CCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWP-RSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~-~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVi 109 (400)
..||++|||||+.. ..++ ....+||++|+++.|.+++.+.+.+.....+.. +.... ..+++ ..+.+||.||
T Consensus 78 ~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~--fvva~-ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVER--FVVAD-GENLPQLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEE--EEeec-hhcCcccccCCeeeEE
Confidence 46899999999885 3333 146799999999999999988876542221110 00111 12343 3578999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC-CCchHHHHHHHHHHH
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT-PQGSSIISQMRSHIL 160 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt-p~Gf~~I~~aR~~lL 160 (400)
++++|....++...+.-++++++ |||.++++|++. +-|| +...-|..+
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~y~~--~n~i~q~v~ 199 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEYGF--WNRILQQVA 199 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEecccccchH--HHHHHHHHh
Confidence 99999999888888888999986 899999999975 3344 555555544
No 33
>PRK08317 hypothetical protein; Provisional
Probab=99.05 E-value=7.9e-09 Score=96.37 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=80.4
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCceeechhhhHhhhhccc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ 100 (400)
+...+....+.+|||+|||+|..+..++..++ ...+++++|.|+.+++.++...... .++.+... ++. ..+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-----d~~-~~~~ 83 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVG-PEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG-----DAD-GLPF 83 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec-----ccc-cCCC
Confidence 33333333457999999999999988887763 2468999999999999998873221 12222211 111 1223
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..+.||+|++.++++++++...-...+.++++ +||.|+++++.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 126 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDTD 126 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEecC
Confidence 45689999999999999877665555666664 79999999874
No 34
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.05 E-value=4.4e-09 Score=98.45 Aligned_cols=111 Identities=20% Similarity=0.306 Sum_probs=79.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+..+....+ ...+++++|.|+.|++.+++.+.... ++.++.. +.. ..+...+.||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~-----d~~-~~~~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVG-KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQG-----DAE-ALPFPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEec-----ccc-cCCCCCCCcc
Confidence 447999999999999888877765 24689999999999999998875421 1212111 111 1222346899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+|+++++|+++++.......+..+++ +||.++++|...+..
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~~~~~ 164 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFSKPTN 164 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEecCCCc
Confidence 99999999998876555444455543 799999999876644
No 35
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.02 E-value=8.4e-10 Score=90.25 Aligned_cols=93 Identities=23% Similarity=0.334 Sum_probs=64.5
Q ss_pred EEEEccchhHHHHHHHHHCCCC-CcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 34 VLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 34 VLDvG~G~Gt~~~Al~~~~~~~-~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
|||+|||+|..+.++.+.++.. ..+++++|.|++|++.+++...... ...++.. ++. .++...++||+|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~-----D~~-~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQA-----DAR-DLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEES-----CTT-CHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEEC-----CHh-HCcccCCCeeEEEEc
Confidence 7999999999999999888322 2799999999999999999885422 2222222 222 233345699999996
Q ss_pred cc-ccCCCCHHHHHHHHHHHHhc
Q 015771 112 YV-LGEVPSLQDRITIVRQLWDL 133 (400)
Q Consensus 112 ~~-L~eL~~~~~r~~~i~~Lw~~ 133 (400)
+. ++++. .++...+++++.+.
T Consensus 75 ~~~~~~~~-~~~~~~ll~~~~~~ 96 (101)
T PF13649_consen 75 GLSLHHLS-PEELEALLRRIARL 96 (101)
T ss_dssp TTGGGGSS-HHHHHHHHHHHHHT
T ss_pred CCccCCCC-HHHHHHHHHHHHHH
Confidence 55 88875 77888888888875
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.02 E-value=3.1e-10 Score=99.45 Aligned_cols=98 Identities=27% Similarity=0.326 Sum_probs=69.8
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+.+ + ..+++++|+|+.|++. . ........ .. ......++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~-~---~~~~~g~D~~~~~~~~-----~---~~~~~~~~-----~~-~~~~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAK-R---GFEVTGVDISPQMIEK-----R---NVVFDNFD-----AQ-DPPFPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHH-T---TSEEEEEESSHHHHHH-----T---TSEEEEEE-----CH-THHCHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHH-h---CCEEEEEECCHHHHhh-----h---hhhhhhhh-----hh-hhhccccchhhH
Confidence 4568999999999998888754 2 2389999999999888 1 11111100 01 112245799999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
++.++|+++++ ...+++.+.+. |||++++..+....
T Consensus 83 ~~~~~l~~~~d---~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 83 ICNDVLEHLPD---PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp EEESSGGGSSH---HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred hhHHHHhhccc---HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 99999999985 44566666664 89999999987644
No 37
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.99 E-value=3.5e-09 Score=105.18 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=77.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..+.+..+. .+|+++|.|++|++.+++.... .++.++.. +.. .++...+.||+|++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~-~~i~~i~g-----D~e-~lp~~~~sFDvVIs 184 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPL-KECKIIEG-----DAE-DLPFPTDYADRYVS 184 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhc-cCCeEEec-----cHH-hCCCCCCceeEEEE
Confidence 469999999999988887776642 5899999999999999886542 23333322 222 23334568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
+++|+++++.....+-+.++++ +||.++++++..+.
T Consensus 185 ~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~ 220 (340)
T PLN02490 185 AGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPT 220 (340)
T ss_pred cChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcc
Confidence 9999999876544444444443 79999999876554
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.98 E-value=1.1e-08 Score=94.80 Aligned_cols=112 Identities=23% Similarity=0.309 Sum_probs=77.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+....+. ..+++++|+|+.+++.++..+....++.++.. ++. ..+...++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~-----d~~-~~~~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQA-----DAE-ALPFEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEec-----chh-cCCCCCCcEEEE
Confidence 35689999999999998888777652 35899999999999999887652112222221 122 122234689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCc
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~G 148 (400)
+++++++++++.....+.+..++ ++||.+++++...+..
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVL-KPGGRLVILEFSKPAN 149 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHc-CCCcEEEEEEecCCCc
Confidence 99999998876544334444444 2799999998866543
No 39
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.97 E-value=2.7e-09 Score=97.62 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=79.0
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
..-+++.+.++..++.++||+|||.|..+..++. ...+|+++|.|+..++.++++++.. +++. +.. ..++..
T Consensus 17 ~~hs~v~~a~~~~~~g~~LDlgcG~GRNalyLA~----~G~~VtAvD~s~~al~~l~~~a~~~-~l~i-~~~--~~Dl~~ 88 (192)
T PF03848_consen 17 PTHSEVLEAVPLLKPGKALDLGCGEGRNALYLAS----QGFDVTAVDISPVALEKLQRLAEEE-GLDI-RTR--VADLND 88 (192)
T ss_dssp ---HHHHHHCTTS-SSEEEEES-TTSHHHHHHHH----TT-EEEEEESSHHHHHHHHHHHHHT-T-TE-EEE--E-BGCC
T ss_pred CCcHHHHHHHhhcCCCcEEEcCCCCcHHHHHHHH----CCCeEEEEECCHHHHHHHHHHHhhc-Ccee-EEE--Eecchh
Confidence 3445666666677889999999999998887773 5678999999999999888877543 3332 211 123332
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.. ....||+|+++.++++|+ ...+..++++|-+. +||+++++..
T Consensus 89 -~~-~~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 89 -FD-FPEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp -BS--TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -cc-ccCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 12 236799999999999996 66677788888664 7999888643
No 40
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.97 E-value=1.2e-08 Score=100.58 Aligned_cols=102 Identities=21% Similarity=0.155 Sum_probs=68.5
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.++.+|||+|||+|..+..+.. ...+|+++|.|+.|++.|+..++... ....+. +...++ ....++
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~----~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~--f~~~Dl----~~l~~~ 212 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLAL----EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPK--FEANDL----ESLSGK 212 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcccccccccceE--EEEcch----hhcCCC
Confidence 3457999999999999888774 23589999999999999998875421 011110 001112 112468
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
||+|++..+|.+++. .....+++.+.+..+|.++|.
T Consensus 213 fD~Vv~~~vL~H~p~-~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 213 YDTVTCLDVLIHYPQ-DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred cCEEEEcCEEEecCH-HHHHHHHHHHHhhcCCEEEEE
Confidence 999999999988874 334466777765545555544
No 41
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.94 E-value=2e-09 Score=101.24 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=74.9
Q ss_pred HHHHHHCCCCCC-------CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhh
Q 015771 20 ESFARRLPGFSP-------AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQ 92 (400)
Q Consensus 20 ~el~~rlp~~~p-------~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~ 92 (400)
+.++++.+.+.| ++|||+|||+|.++..++. ....|++||.|+.|++.|+......+-... ...+.+.
T Consensus 72 d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLAr----lga~V~GID~s~~~V~vA~~h~~~dP~~~~-~~~y~l~ 146 (282)
T KOG1270|consen 72 DDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLAR----LGAQVTGIDASDDMVEVANEHKKMDPVLEG-AIAYRLE 146 (282)
T ss_pred HHHHhcccccCCCccccCCceEEEeccCccccchhhHh----hCCeeEeecccHHHHHHHHHhhhcCchhcc-ccceeee
Confidence 455556544333 5699999999999888773 457999999999999999987332111000 0000011
Q ss_pred HhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 93 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 93 ~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
.....+....+.||.|+|+-+|.++.++.+-..-+-+++ +|+|.|+|-.
T Consensus 147 ~~~~~~E~~~~~fDaVvcsevleHV~dp~~~l~~l~~~l-kP~G~lfitt 195 (282)
T KOG1270|consen 147 YEDTDVEGLTGKFDAVVCSEVLEHVKDPQEFLNCLSALL-KPNGRLFITT 195 (282)
T ss_pred hhhcchhhcccccceeeeHHHHHHHhCHHHHHHHHHHHh-CCCCceEeee
Confidence 111222233456999999999999976654444333333 2899999874
No 42
>PLN03075 nicotianamine synthase; Provisional
Probab=98.94 E-value=1.1e-08 Score=99.35 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=82.6
Q ss_pred HHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchh--HHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC----C
Q 015771 9 LECLLFTLLVTESFARRLPGFSPAKVLDFGAGTG--SAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----L 82 (400)
Q Consensus 9 ~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~G--t~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~----~ 82 (400)
-.||-.+.+.=.++-..+..-.|.+|||+|||+| ++++.++..++. .+++++|.|++|++.|++.+....+ +
T Consensus 102 ~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~--~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV 179 (296)
T PLN03075 102 YNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPT--TSFHNFDIDPSANDVARRLVSSDPDLSKRM 179 (296)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHhhhccCccCCc
Confidence 3566666554333333333337899999999999 777877777764 5899999999999999999954222 2
Q ss_pred CceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 83 PLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
.+.. .++.. .....+.||+|++. +|..+. .....++++++++. +||.|++=
T Consensus 180 ~F~~-----~Da~~-~~~~l~~FDlVF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 180 FFHT-----ADVMD-VTESLKEYDVVFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEE-----Cchhh-cccccCCcCEEEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEe
Confidence 2221 12222 11123689999999 888773 34556677777764 78888854
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.92 E-value=9.4e-09 Score=101.79 Aligned_cols=106 Identities=21% Similarity=0.238 Sum_probs=72.1
Q ss_pred HCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC---CCCCCceeechhhhHhhhhcccC
Q 015771 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 25 rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~---~~~~~~~~~~~~~~~l~~~l~~~ 101 (400)
.++...+.+|||+|||+|..++.++...+ ..|+++|+|+.|+..++..... ..++.++.. ++. .++.
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~---~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~-----d~e-~lp~- 186 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA---KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL-----GIE-QLPA- 186 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCC---CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC-----CHH-HCCC-
Confidence 44455678999999999999998886543 3699999999998754433221 112222221 122 2333
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.+.||+|++..+|+++.++.....-+.+.++ +||.|||-
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~ 225 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLE 225 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 5689999999999998876655555555553 79999874
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.92 E-value=1.8e-08 Score=94.15 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=70.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+.+|||+|||+|..+..+++. ...|+++|.|+.|++.|++.+........+... ..+ ++...+.||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~----~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~--~~d----~~~~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR----GAKVVASDISPQMVEEARERAPEAGLAGNITFE--VGD----LESLLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc----CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEE--EcC----chhccCCcCEE
Confidence 34579999999999988877743 346999999999999999887543211111110 011 22234679999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gt 145 (400)
++..+|++++ ......+++.+.+. ++|.++...+.+
T Consensus 132 ~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 132 VCLDVLIHYP-QEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred EEcchhhcCC-HHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 9999998876 34455677777655 344555544433
No 45
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.91 E-value=9.2e-09 Score=101.26 Aligned_cols=110 Identities=16% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh---hcCCCCCCceeechhhhHhhhhc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL---MQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l---l~~~~~~~~~~~~~~~~~l~~~l 98 (400)
+...+...++.+|||+|||+|..++.+.... ...|+++|+|+.|+..++.. +.......+... ++. .+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g---~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~-----~ie-~l 183 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHG---AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL-----GIE-QL 183 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcHHHHHHHHcC---CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC-----CHH-HC
Confidence 4444455667899999999999988877542 34799999999998754332 221111111111 121 23
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+. ...||+|++..+|.+++++..-+..+.++++ +||.|||..
T Consensus 184 p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvlet 225 (314)
T TIGR00452 184 HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLET 225 (314)
T ss_pred CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 32 3479999999999999877665555556554 799999754
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.90 E-value=8.2e-09 Score=99.42 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=72.0
Q ss_pred CCCeEEEEccchhHH----HHHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcCC---CCCC------c---------
Q 015771 30 SPAKVLDFGAGTGSA----FWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQGP---KDLP------L--------- 84 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~----~~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~------~--------- 84 (400)
.+.+|+|+|||+|.- +..+.+.++. ...+|+++|+|+.|++.|+..+-.. .+++ +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 457999999999953 3345555432 2358999999999999998754210 0111 0
Q ss_pred e------eechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 85 I------HSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 85 ~------~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+ ...+...++.. .+.+.++||+|+|.++|++++ ...+..+++++.+. |||+|+|-..
T Consensus 179 v~~~ir~~V~F~~~dl~~-~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLA-ESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCC-CCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0 00000112221 122357899999999999996 56677777777664 8999998644
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.89 E-value=1.3e-08 Score=97.99 Aligned_cols=108 Identities=13% Similarity=0.168 Sum_probs=73.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..++...+ ...+++++|.|+.|++.|++...... ...+.. ...++. .++...+.||+|++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g-~~~~v~gvD~s~~~l~~A~~~~~~~g-~~~v~~--~~~d~~-~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVG-PTGKVIGVDMTPEMLAKARANARKAG-YTNVEF--RLGEIE-ALPVADNSVDVIIS 152 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEECCCHHHHHHHHHHHHHcC-CCCEEE--EEcchh-hCCCCCCceeEEEE
Confidence 46999999999987766665554 23589999999999999998765432 111111 011222 23334568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
..+++..++...-...+.++++ +||.|++++..
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~ 185 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLK-PGGRFAISDVV 185 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEee
Confidence 9999988765443444444443 79999998753
No 48
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.88 E-value=1.1e-08 Score=95.41 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=73.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
++|||+|||+|..+..+++.++ ..+++++|.|++|++.++..+........+... ..++... + ..++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~--~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~--~~d~~~~-~-~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP--HLQLHGYTISPEQAEVGRERIRALGLQGRIRIF--YRDSAKD-P-FPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEE--ecccccC-C-CCCCCCEeehH
Confidence 3799999999998888887765 258999999999999999887543211111110 1122111 2 23579999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
.+++++++.......+.++++ |||.+++.+..
T Consensus 75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~ 106 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFI 106 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcc
Confidence 999999865544444555553 89999998863
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.87 E-value=2.3e-08 Score=103.94 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+.+|||+|||+|..+..++..++ .+++++|+|+.|++.|+....... .+.+.. .++. ..+.+.++||+|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~---~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~-----~d~~-~~~~~~~~fD~I 336 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFD---VHVVGIDLSVNMISFALERAIGRKCSVEFEV-----ADCT-KKTYPDNSFDVI 336 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhhcCCCceEEEE-----cCcc-cCCCCCCCEEEE
Confidence 356999999999998887776553 489999999999999987664322 111211 1222 122345689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
++..++.++++.......+.++++ |||.|+|.+...
T Consensus 337 ~s~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~ 372 (475)
T PLN02336 337 YSRDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCR 372 (475)
T ss_pred EECCcccccCCHHHHHHHHHHHcC-CCeEEEEEEecc
Confidence 999999999876554445555553 899999987643
No 50
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.86 E-value=2.7e-08 Score=96.07 Aligned_cols=127 Identities=15% Similarity=0.202 Sum_probs=80.6
Q ss_pred hHHHHHHHHH-HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCC-CcEEEEEeCCHHHHHHHHHhhcCCCCCCceeec
Q 015771 11 CLLFTLLVTE-SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSY 88 (400)
Q Consensus 11 ~Ya~~~~vL~-el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~-~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~ 88 (400)
.|..+...+. .+.+.++ ..+.+|||+|||+|..+..+.+..+.. ...++++|+|+.|++.|++... ++.+...
T Consensus 66 ~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~---~~~~~~~- 140 (272)
T PRK11088 66 HYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP---QVTFCVA- 140 (272)
T ss_pred ChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC---CCeEEEe-
Confidence 4555555443 3333333 244789999999999988887766532 2479999999999999977543 2222221
Q ss_pred hhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 89 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 89 ~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+.. .++...+.||+|++.++... ..-+.++++ +||.|+++.++... +.++|+.+
T Consensus 141 ----d~~-~lp~~~~sfD~I~~~~~~~~-------~~e~~rvLk-pgG~li~~~p~~~~----l~el~~~~ 194 (272)
T PRK11088 141 ----SSH-RLPFADQSLDAIIRIYAPCK-------AEELARVVK-PGGIVITVTPGPRH----LFELKGLI 194 (272)
T ss_pred ----ecc-cCCCcCCceeEEEEecCCCC-------HHHHHhhcc-CCCEEEEEeCCCcc----hHHHHHHh
Confidence 121 24445678999998765221 123445553 89999999887533 33456554
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.85 E-value=3.4e-08 Score=89.90 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=66.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
..+.+|||+|||+|..+..++...+ ..+|+++|.|+.|++.++..++... ++.++.. ++.. +. ..++||
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~--~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~-----d~~~-~~-~~~~fD 111 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARP--ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG-----RAED-FQ-HEEQFD 111 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec-----chhh-cc-ccCCcc
Confidence 4568999999999988877766654 3579999999999999888775432 2222222 2221 21 246899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
+|++.. +.. ...-.+.+.++++ +||.+++..
T Consensus 112 ~I~s~~-~~~---~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 112 VITSRA-LAS---LNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred EEEehh-hhC---HHHHHHHHHHhcC-CCCEEEEEc
Confidence 998865 433 3333444455553 799998774
No 52
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.84 E-value=4.8e-08 Score=91.10 Aligned_cols=100 Identities=25% Similarity=0.266 Sum_probs=68.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.+.+.+|||+|||+|..+..++. ...+++++|.|++|+..|++.+.... ++.+.. .++.. ..++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~----~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~-----~d~~~----~~~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAK----RGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEV-----NDLLS----LCGE 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHH----CCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-----CChhh----CCCC
Confidence 34568999999999998887764 23589999999999999998875431 122221 11211 1268
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLV 141 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlV 141 (400)
||+|++.+++.+++ ......++.++.+. .+|.++.+
T Consensus 120 fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 120 FDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred cCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999998886 44455677777654 34444443
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.84 E-value=1.8e-08 Score=93.13 Aligned_cols=121 Identities=9% Similarity=0.021 Sum_probs=75.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++..++. .+|++||.|+.|++.++..+.... ++.++.... ...+... ...+.||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~-~~~l~~~--~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDA-VEVLLDM--FPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCH-HHHHHHH--cCccccce
Confidence 4579999999999999998877753 579999999999999988775432 222222210 0112111 23567999
Q ss_pred EeecccccCCCCHH-----HHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 108 VIASYVLGEVPSLQ-----DRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 108 Vias~~L~eL~~~~-----~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
|++.+...+..... ....+++++++. +||.|+|+.+ ....+..+.+.+
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----~~~~~~~~~~~~ 169 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----WEGYAEYMLEVL 169 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----CHHHHHHHHHHH
Confidence 99877653322110 123455555543 8999999864 233344444443
No 54
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.84 E-value=2.7e-08 Score=91.01 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=67.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+|||+|..+++++..++ ..+|+++|.|+.|++.|++.++... ++.++.. +.. .+.. .++||+|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~--~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~-----d~~-~~~~-~~~fDlV 116 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARP--ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG-----RAE-EFGQ-EEKFDVV 116 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCC--CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec-----cHh-hCCC-CCCccEE
Confidence 57999999999998888777665 4689999999999999998876542 2222221 222 1222 5689999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
++... .+...-...+.++++ +||.+++++..
T Consensus 117 ~~~~~----~~~~~~l~~~~~~Lk-pGG~lv~~~~~ 147 (187)
T PRK00107 117 TSRAV----ASLSDLVELCLPLLK-PGGRFLALKGR 147 (187)
T ss_pred EEccc----cCHHHHHHHHHHhcC-CCeEEEEEeCC
Confidence 98652 223333333444443 89999999754
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.83 E-value=2.2e-08 Score=104.08 Aligned_cols=113 Identities=17% Similarity=0.271 Sum_probs=77.4
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh-hhccc
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDISK 100 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~-~~l~~ 100 (400)
+...++.....+|||+|||+|..+..+++. ..+++++|.|+.|++.++.+.....++.++.. ++. ..++.
T Consensus 29 il~~l~~~~~~~vLDlGcG~G~~~~~la~~----~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~-----d~~~~~~~~ 99 (475)
T PLN02336 29 ILSLLPPYEGKSVLELGAGIGRFTGELAKK----AGQVIALDFIESVIKKNESINGHYKNVKFMCA-----DVTSPDLNI 99 (475)
T ss_pred HHhhcCccCCCEEEEeCCCcCHHHHHHHhh----CCEEEEEeCCHHHHHHHHHHhccCCceEEEEe-----cccccccCC
Confidence 334444444579999999999999888854 34899999999999987764432223333222 121 12233
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+.++||+|++.++|+++++ .+...+++++.+. +||.|++.|..
T Consensus 100 ~~~~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCCCEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 4578999999999999974 4455666666553 89999998753
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.79 E-value=7.6e-08 Score=80.58 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=65.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..++.++..++. .+|+++|.|+.|++.++..++... ...+... ..+....++....+||+|+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFG-VSNIVIV--EGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhC-CCceEEE--eccccccChhhcCCCCEEE
Confidence 3469999999999999999888763 689999999999999988775432 1111110 0111111111235899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
+......+ ..+++.+.+. +||.|++-
T Consensus 94 ~~~~~~~~------~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 94 IGGSGGLL------QEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred ECCcchhH------HHHHHHHHHHcCCCCEEEEE
Confidence 97654322 2444444442 79998864
No 57
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.78 E-value=1e-07 Score=88.75 Aligned_cols=106 Identities=20% Similarity=0.198 Sum_probs=73.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--CCceeechhhhHhhhhcccCCCccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.++.+|||+|||+|..+..+... ..+++++|.|+.|++.++..+..... +.+... +.........++||
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~D 114 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL----GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT-----SVEDLAEKGAKSFD 114 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC-----CHHHhhcCCCCCcc
Confidence 45789999999999988776643 24699999999999999887654321 211111 11111111236899
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
+|+++++|+++.+.......+.++++ +||.+++....
T Consensus 115 ~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~ 151 (224)
T TIGR01983 115 VVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFSTIN 151 (224)
T ss_pred EEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEecC
Confidence 99999999999877655555555553 79998887664
No 58
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.77 E-value=7.6e-08 Score=90.46 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=76.9
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDIS 99 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~ 99 (400)
.+...+......+|||+|||+|..+..+... ..+++++|.|+.+++.++..+..... +.+... +......
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~ 109 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL----GADVTGIDASEENIEVARLHALESGLKIDYRQT-----TAEELAA 109 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc----CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEec-----CHHHhhh
Confidence 3343333445679999999999988776642 35799999999999998877643221 111111 1111111
Q ss_pred cCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 100 KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
...++||+|++++++..+++....+..+.++++ +||.+++..++
T Consensus 110 ~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~ 153 (233)
T PRK05134 110 EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLN 153 (233)
T ss_pred hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecC
Confidence 234689999999999999877665556666653 79999988764
No 59
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.77 E-value=1.3e-07 Score=88.79 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=92.0
Q ss_pred HHHHHHHhHHHHHHHHHHHH----HH---------CCCCCCCeEEEEccchhHHHHHHHHHCC----CCCcEEEEEeCCH
Q 015771 4 LLMLLLECLLFTLLVTESFA----RR---------LPGFSPAKVLDFGAGTGSAFWALREVWP----RSLEKVNLVEPSQ 66 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~el~----~r---------lp~~~p~~VLDvG~G~Gt~~~Al~~~~~----~~~~~v~~vD~S~ 66 (400)
++.....+++..|.++..+- +| +......++||++||||-.++.+.+..+ ....+|+++|+|+
T Consensus 61 ~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp 140 (296)
T KOG1540|consen 61 LVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP 140 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH
Confidence 34455566666666655432 22 2223458999999999999888776553 2337899999999
Q ss_pred HHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCC
Q 015771 67 SMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPG 144 (400)
Q Consensus 67 ~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~G 144 (400)
+|++.|++.....+--.- ....++..-...+|++...||+.+++|.+...++... .+++..+ +|||.+.+.|..
T Consensus 141 ~mL~vgkqRa~~~~l~~~-~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k---~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 141 HMLAVGKQRAKKRPLKAS-SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQK---ALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred HHHHHHHHHHhhcCCCcC-CceEEEeCCcccCCCCCCcceeEEEecceecCCCHHH---HHHHHHHhcCCCcEEEEEEcc
Confidence 999999998754211110 0011111113356778899999999999999886543 4444444 389999999875
Q ss_pred CC
Q 015771 145 TP 146 (400)
Q Consensus 145 tp 146 (400)
.-
T Consensus 217 kv 218 (296)
T KOG1540|consen 217 KV 218 (296)
T ss_pred cc
Confidence 43
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.77 E-value=1e-07 Score=86.16 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.++.+|||+|||+|..+..++... .+++++|.|+.|++.++..+.... +...+. .++.. ...++||+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-----~d~~~---~~~~~fD~ 85 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG----KCILTTDINPFAVKELRENAKLNNVGLDVVM-----TDLFK---GVRGKFDV 85 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC----CEEEEEECCHHHHHHHHHHHHHcCCceEEEE-----ccccc---ccCCcccE
Confidence 345789999999999988877543 289999999999999998875432 111111 11111 12358999
Q ss_pred EeecccccCCCCHHH------------------HHHHHHHHHh--ccCCeEEEEcCCCCCc
Q 015771 108 VIASYVLGEVPSLQD------------------RITIVRQLWD--LTRDVLVLVEPGTPQG 148 (400)
Q Consensus 108 Vias~~L~eL~~~~~------------------r~~~i~~Lw~--~~gG~LVlVE~Gtp~G 148 (400)
|+++..+++.+.... ...+++++.+ ++||.++++.++....
T Consensus 86 Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~ 146 (179)
T TIGR00537 86 ILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE 146 (179)
T ss_pred EEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh
Confidence 999887766543211 1234444333 2799999998866543
No 61
>PRK06922 hypothetical protein; Provisional
Probab=98.75 E-value=1.5e-07 Score=99.70 Aligned_cols=106 Identities=14% Similarity=0.163 Sum_probs=74.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcc--cCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDIS--KSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~--~~~~~~D 106 (400)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+....... +...+.. +.. .++ ...++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~g-----Da~-dLp~~fedeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKG-----DAI-NLSSSFEKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEc-----chH-hCccccCCCCEE
Confidence 458999999999998888877665 3689999999999999988764321 1111211 111 122 3456899
Q ss_pred EEeecccccCCCC----------HHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 107 LVIASYVLGEVPS----------LQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 107 LVias~~L~eL~~----------~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+|+++++++++.+ ......+++++.+. |||.++|+|.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999999887531 23455667766653 8999999986
No 62
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.75 E-value=1.3e-07 Score=95.77 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=77.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
.+..+.+++.-..+.+|||+|||+|..+..++...+ .+|+++|.|++|++.|++.+... .+.+. ..+.. .
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g---~~V~giDlS~~~l~~A~~~~~~l-~v~~~-----~~D~~-~ 224 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG---VSVVGVTISAEQQKLAQERCAGL-PVEIR-----LQDYR-D 224 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHhccC-eEEEE-----ECchh-h
Confidence 344555555433457999999999999887776543 48999999999999999887532 11111 11121 1
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTP 146 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp 146 (400)
..++||+|++..++.++.. .....+++.+.+ +|||.+++...+.+
T Consensus 225 ---l~~~fD~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 225 ---LNGQFDRIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred ---cCCCCCEEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 1368999999999988853 223344444443 38999999876544
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.73 E-value=1.4e-07 Score=87.45 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
..+|||+|||+|..+..+++..+ ...+|+++|.|++|++.|++.+..... +.++. .+....++ ...+||+
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~-~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~-----~d~~~~~~-~~~~fD~ 145 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIE-RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH-----GDGKRGLE-KHAPFDA 145 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-----CCcccCCc-cCCCccE
Confidence 36999999999998877776664 235899999999999999987764321 11221 12222222 3468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|++..++.+++. ++++. + ++||.|++.-
T Consensus 146 Ii~~~~~~~~~~-----~l~~~-L-~~gG~lvi~~ 173 (205)
T PRK13944 146 IIVTAAASTIPS-----ALVRQ-L-KDGGVLVIPV 173 (205)
T ss_pred EEEccCcchhhH-----HHHHh-c-CcCcEEEEEE
Confidence 999999887752 23333 3 3799998864
No 64
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.72 E-value=2.3e-07 Score=91.12 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=72.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+.++.+.+|. .+++++|. +.|++.++..+....-...+... ..+... .+ ...+|+|++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~--~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~--~~d~~~-~~--~~~~D~v~~ 221 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPE--LDSTILNL-PGAIDLVNENAAEKGVADRMRGI--AVDIYK-ES--YPEADAVLF 221 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCC--CEEEEEec-HHHHHHHHHHHHhCCccceEEEE--ecCccC-CC--CCCCCEEEe
Confidence 379999999999999999988873 57999997 78999998877643211111110 011111 11 124799999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+++|+..+ ......+++++.+. |||.|+|+|.
T Consensus 222 ~~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSAN-EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999875 44456677777663 8999999986
No 65
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.71 E-value=3e-08 Score=92.37 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=77.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALN 95 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~ 95 (400)
..+..+..+-..- ..++|+|||+|.++..+++.+ .+|+++|.|++|+++|++...... +.+..-.. .++
T Consensus 22 dw~~~ia~~~~~h--~~a~DvG~G~Gqa~~~iae~~----k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~---~~~- 91 (261)
T KOG3010|consen 22 DWFKKIASRTEGH--RLAWDVGTGNGQAARGIAEHY----KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSS---DEM- 91 (261)
T ss_pred HHHHHHHhhCCCc--ceEEEeccCCCcchHHHHHhh----hhheeecCCHHHHHHhhcCCCcccccCCccccc---ccc-
Confidence 3556666654332 489999999998888888765 479999999999999887654321 11110000 000
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
..+...+++.|||+++.++|+.. .+.-...+.++++++||.+.+
T Consensus 92 v~L~g~e~SVDlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 92 VDLLGGEESVDLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccccCCCcceeeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 11222367999999999999995 666677888899877775553
No 66
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.68 E-value=3.1e-07 Score=83.62 Aligned_cols=101 Identities=19% Similarity=0.121 Sum_probs=66.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++..++ ..+++++|.|+.|++.+++.+.... ++.++.. +.... ...+||+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-----d~~~~---~~~~~D~ 100 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFP--SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-----EAPIE---LPGKADA 100 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-----Cchhh---cCcCCCE
Confidence 457999999999999988887765 3689999999999999988775431 2211111 11111 2357999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPG 144 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~G 144 (400)
|++..+...+ ..-...+.+++ ++||.+++....
T Consensus 101 v~~~~~~~~~---~~~l~~~~~~L-k~gG~lv~~~~~ 133 (187)
T PRK08287 101 IFIGGSGGNL---TAIIDWSLAHL-HPGGRLVLTFIL 133 (187)
T ss_pred EEECCCccCH---HHHHHHHHHhc-CCCeEEEEEEec
Confidence 9998765433 22222233333 279999886543
No 67
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.66 E-value=3.1e-07 Score=84.14 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=69.0
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
|.++.+.++ .+.+|||+|||+|..+.++.+.. ...++++|.|++|++.++.. ++..+... +...+
T Consensus 4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~---~~~~~giD~s~~~i~~a~~~-----~~~~~~~d-----~~~~l 68 (194)
T TIGR02081 4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEK---QVRGYGIEIDQDGVLACVAR-----GVNVIQGD-----LDEGL 68 (194)
T ss_pred HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc---CCcEEEEeCCHHHHHHHHHc-----CCeEEEEE-----hhhcc
Confidence 455555554 23699999999999887776433 24679999999999888641 23333221 22212
Q ss_pred -ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 99 -SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 99 -~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+...++||+|+++++|+++++. ..+++++.+ .++.+++.
T Consensus 69 ~~~~~~sfD~Vi~~~~l~~~~d~---~~~l~e~~r-~~~~~ii~ 108 (194)
T TIGR02081 69 EAFPDKSFDYVILSQTLQATRNP---EEILDEMLR-VGRHAIVS 108 (194)
T ss_pred cccCCCCcCEEEEhhHhHcCcCH---HHHHHHHHH-hCCeEEEE
Confidence 1235689999999999999754 356777776 45655544
No 68
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.66 E-value=2.2e-07 Score=91.18 Aligned_cols=118 Identities=9% Similarity=0.176 Sum_probs=75.2
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCc--eeechhhhH
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPL--IHSYNSIQA 93 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~--~~~~~~~~~ 93 (400)
....+|...++ .+.+|||+|||+|..+..+.+.++. ..+|++||.|++|++.+...+... ..+.. +.. +
T Consensus 52 ~~~~~ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~-~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g-----D 123 (301)
T TIGR03438 52 RHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQ-PARYVPIDISADALKESAAALAADYPQLEVHGICA-----D 123 (301)
T ss_pred HHHHHHHHhhC--CCCeEEecCCCcchhHHHHHHhhcc-CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE-----c
Confidence 34445555543 2468999999999999888877642 468999999999999888776542 22221 221 2
Q ss_pred hhhhcccCC----CcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 94 LNKDISKSE----REHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 94 l~~~l~~~~----~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+...++... ....+++++.+++.++ ..+...+++++.+. +||.|+|--.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 124 FTQPLALPPEPAAGRRLGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccchhhhhcccccCCeEEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 221111111 1233555667788885 66777778777764 7898886433
No 69
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.65 E-value=3.2e-07 Score=85.62 Aligned_cols=114 Identities=16% Similarity=-0.005 Sum_probs=73.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--------------CCC
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDL 82 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--------------~~~ 82 (400)
..|.++..+++.-.+.+|||+|||.|..+..+++ ...+|++||.|+.+++.+.....-. .++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~----~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAE----QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHh----CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence 3455555554222346999999999988877773 5678999999999999753311100 001
Q ss_pred CceeechhhhHhhhhcc-cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 83 PLIHSYNSIQALNKDIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 83 ~~~~~~~~~~~l~~~l~-~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
.++ ..++.. ++ ...++||+|+-..+++.++ +..|...+.++.+. |||.++++
T Consensus 97 ~~~-----~~D~~~-~~~~~~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 97 EIF-----CGDFFA-LTAADLGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred EEE-----EccCCC-CCcccCCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 111 112211 11 1135799999999999996 77787777777664 89987666
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.64 E-value=3.2e-07 Score=85.53 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+..++...+ ...+|+++|.+++|++.|++.++... ++.++.. +..... ....+||+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~-~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~-----d~~~~~-~~~~~fD~ 149 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVG-RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG-----DGTQGW-EPLAPYDR 149 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC-----CcccCC-cccCCCCE
Confidence 347999999999999988887765 23579999999999999999886542 2222221 121111 12358999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|++......++. .+.+.+ ++||.||+.-
T Consensus 150 Ii~~~~~~~~~~------~~~~~L-~~gG~lv~~~ 177 (215)
T TIGR00080 150 IYVTAAGPKIPE------ALIDQL-KEGGILVMPV 177 (215)
T ss_pred EEEcCCcccccH------HHHHhc-CcCcEEEEEE
Confidence 999887766641 233344 3799998763
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.64 E-value=3.4e-07 Score=85.28 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++...+ ...+|+++|.+++|++.+++.++... ++.++.. +..... ....+||+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~-~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g-----d~~~~~-~~~~~fD~ 148 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVG-KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG-----DGTLGY-EENAPYDR 148 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC-----CcccCC-CcCCCcCE
Confidence 347999999999999877776654 34689999999999999999886542 2222221 111111 23468999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|++...+.+++. .+.+ .+ ++||.||+..
T Consensus 149 I~~~~~~~~~~~-----~l~~-~L-kpgG~lvi~~ 176 (212)
T PRK13942 149 IYVTAAGPDIPK-----PLIE-QL-KDGGIMVIPV 176 (212)
T ss_pred EEECCCcccchH-----HHHH-hh-CCCcEEEEEE
Confidence 999888766641 2333 33 3799998864
No 72
>PRK04266 fibrillarin; Provisional
Probab=98.64 E-value=4.9e-07 Score=85.12 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=67.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
+|..+ +.++-....+|||+|||+|..+..+++..+ ..+|+++|.|++|++.+.+.++...|+..+... ....
T Consensus 61 ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~--~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D-----~~~~ 132 (226)
T PRK04266 61 ILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVE--EGVVYAVEFAPRPMRELLEVAEERKNIIPILAD-----ARKP 132 (226)
T ss_pred HHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcC--CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECC-----CCCc
Confidence 44444 334433346999999999999988887764 358999999999998766665543344333221 1110
Q ss_pred --cccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEE
Q 015771 98 --ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVL 140 (400)
Q Consensus 98 --l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVl 140 (400)
......+||+|++. ++.+.....+++++.+ +|||.|+|
T Consensus 133 ~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 133 ERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred chhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEE
Confidence 00112469999853 3333222233444443 38999999
No 73
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.62 E-value=6.1e-07 Score=89.58 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=75.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..+..+....+ ..+++++|.|+.|++.++..++... +... .. ..+.. ....++||+||
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p--~~~v~~vDis~~Al~~A~~nl~~n~-l~~~-~~--~~D~~---~~~~~~fDlIv 266 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSP--KIRLTLSDVSAAALESSRATLAANG-LEGE-VF--ASNVF---SDIKGRFDMII 266 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CCCE-EE--Ecccc---cccCCCccEEE
Confidence 346899999999999888887765 3579999999999999998776432 2211 00 01111 11346899999
Q ss_pred ecccccCCCC--HHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHH
Q 015771 110 ASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 152 (400)
Q Consensus 110 as~~L~eL~~--~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I 152 (400)
++..++.... ......++.+..+. +||.|+||-+.. ..|..+
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~-l~y~~~ 312 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-LPYPDL 312 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC-CChHHH
Confidence 9988775322 23345566665553 899999997643 446543
No 74
>PRK04457 spermidine synthase; Provisional
Probab=98.61 E-value=4.1e-07 Score=87.54 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=68.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.|.+|||+|||.|+.+..+...+| ..++++||+++++++.|++.+......+.++.. ..+....+.....+||+|+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~--~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLP--DTRQTAVEINPQVIAVARNHFELPENGERFEVI--EADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCC--CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEE--ECCHHHHHHhCCCCCCEEE
Confidence 468999999999999988888776 358999999999999999887532211211110 1122211222345899999
Q ss_pred eccc-ccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 110 ASYV-LGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 110 as~~-L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+... -...+......++++++.+. +||.|++--.+.
T Consensus 142 ~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 142 VDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 7531 11222111123445554443 799999854433
No 75
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.61 E-value=9.1e-07 Score=79.49 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=73.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...+|||+|||+|..++.++...+ ..+++++|.|+.+++.++..++... ...+... ..++...+ ...+||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~--~~~v~~vDi~~~a~~~a~~n~~~n~-~~~v~~~--~~d~~~~~--~~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP--DAKVTAVDINPDALELAKRNAERNG-LENVEVV--QSDLFEAL--PDGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST--CEEEEEEESBHHHHHHHHHHHHHTT-CTTEEEE--ESSTTTTC--CTTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCC--CCEEEEEcCCHHHHHHHHHHHHhcC-ccccccc--cccccccc--cccceeEEE
Confidence 347999999999999999887765 3469999999999999998886532 2212211 11222222 357899999
Q ss_pred ecccccCCCC--HHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHH
Q 015771 110 ASYVLGEVPS--LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 152 (400)
Q Consensus 110 as~~L~eL~~--~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I 152 (400)
++--++.-.. ..-...++++..+. +||.|++|-. +..+++.+
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~-~~~~~~~~ 149 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN-SHLGYERL 149 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE-TTSCHHHH
T ss_pred EccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee-cCCChHHH
Confidence 9876554431 11233455554443 7999987765 35566555
No 76
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=5.5e-07 Score=86.79 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
.+.++.+.+.+.--.+.+|||||||-|..+..+++.++ .+|++|+.|+++.+.+++.+...+-...++.. ++++.
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~---v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~--l~d~r 132 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG---VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR--LQDYR 132 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC---CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE--ecccc
Confidence 34566666666544458999999999999888887664 68999999999999999977654321112111 12222
Q ss_pred hhcccCCCcccEEeecccccCCCC--HHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 96 KDISKSEREHDLVIASYVLGEVPS--LQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~--~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
...++||-||+--++.++.. ...-...+.++++ +||.+++-.-+.+.
T Consensus 133 ----d~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~~ 181 (283)
T COG2230 133 ----DFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGPD 181 (283)
T ss_pred ----ccccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCCC
Confidence 23345999999999999964 2222334444443 79999988777666
No 77
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.57 E-value=5.3e-07 Score=90.94 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=67.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--CCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|....+++..+| ..+++++|.|+.|++.++..++.... ...+... ..+....+ ...+||+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P--~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP--QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM--INNALSGV--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEE--EccccccC--CCCCEEEE
Confidence 35999999999999988888776 35899999999999999987753211 1111111 11111111 23579999
Q ss_pred eecccccCC--CCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 109 IASYVLGEV--PSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 109 ias~~L~eL--~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+++--++.. -+.....+++....+. +||.|+||-
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 997444332 1223334555555443 799999884
No 78
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.57 E-value=1.1e-06 Score=85.71 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-ceeechhhh
Q 015771 14 FTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-LIHSYNSIQ 92 (400)
Q Consensus 14 ~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-~~~~~~~~~ 92 (400)
++.-++..+.+.. ..+.+|||+|||+|..+.+++.. + ..+++++|.|+.|++.|+..+.... +. .+... ..
T Consensus 145 tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~-g--~~~V~avDid~~al~~a~~n~~~n~-~~~~~~~~--~~ 216 (288)
T TIGR00406 145 TTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKL-G--AAKVVGIDIDPLAVESARKNAELNQ-VSDRLQVK--LI 216 (288)
T ss_pred HHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHcC-CCcceEEE--ec
Confidence 3333444444332 23479999999999888776643 2 3589999999999999998876432 21 11110 01
Q ss_pred HhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCC
Q 015771 93 ALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPG 144 (400)
Q Consensus 93 ~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~G 144 (400)
+. .....++||+|+++..... ...++.++.+ ++||.|++....
T Consensus 217 ~~---~~~~~~~fDlVvan~~~~~------l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 217 YL---EQPIEGKADVIVANILAEV------IKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred cc---ccccCCCceEEEEecCHHH------HHHHHHHHHHHcCCCcEEEEEeCc
Confidence 11 1123468999998754322 2233433333 279999998664
No 79
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.55 E-value=9.7e-07 Score=82.14 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=73.3
Q ss_pred HHHHHHHCCCC-CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechh----hhH
Q 015771 19 TESFARRLPGF-SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS----IQA 93 (400)
Q Consensus 19 L~el~~rlp~~-~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~----~~~ 93 (400)
|.|+..+..-+ ...+|||+|||||..+..+++..+ ....|++||+++ |. ...++.+++.... +..
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~-~~~~V~aVDi~~-~~--------~~~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIG-DKGRVIACDILP-MD--------PIVGVDFLQGDFRDELVLKA 108 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcC-CCceEEEEeccc-cc--------CCCCcEEEecCCCChHHHHH
Confidence 34454444423 346899999999999888887765 246899999988 32 1122322222110 001
Q ss_pred hhhhcccCCCcccEEeecccccCCCCHH---HH-----HHHHHHHHh--ccCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 94 LNKDISKSEREHDLVIASYVLGEVPSLQ---DR-----ITIVRQLWD--LTRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~eL~~~~---~r-----~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
+... ...++||+|++..+.+...+.. .+ ..+++.+.+ ++||.|++.......=-+.+..+|..+.
T Consensus 109 i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 109 LLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred HHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCce
Confidence 1111 2346899999977666543221 11 123333332 2899999976655443445556665554
No 80
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.55 E-value=8.7e-07 Score=83.86 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcc
Q 015771 27 PGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 27 p~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
.+|.+ .+|||||+|.|..+.++...+|. .++++.|. |++++.++. ...+.++.. ++-..+ + . +
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~v~Dl-p~v~~~~~~----~~rv~~~~g-----d~f~~~--P-~-~ 159 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPN--LRATVFDL-PEVIEQAKE----ADRVEFVPG-----DFFDPL--P-V-A 159 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTT--SEEEEEE--HHHHCCHHH----TTTEEEEES------TTTCC--S-S-E
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCC--Ccceeecc-Hhhhhcccc----ccccccccc-----cHHhhh--c-c-c
Confidence 45654 58999999999999999999984 47999998 888888877 112222221 222222 2 3 9
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cC--CeEEEEcCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TR--DVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~g--G~LVlVE~G 144 (400)
|+|+++++||..+ .++-..+++++.+. || |.|+|+|.-
T Consensus 160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9999999999997 66777888888775 78 999999874
No 81
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.54 E-value=7.2e-07 Score=86.33 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=74.7
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK 96 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~ 96 (400)
+-++.+.+++.--.+.+|||+|||-|..+..+++.++ .+|++|..|.+..+.+++.+++.+....+... ..+..
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g---~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~--~~D~~- 122 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG---CHVTGITLSEEQAEYARERIREAGLEDRVEVR--LQDYR- 122 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEE--ES-GG-
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC---cEEEEEECCHHHHHHHHHHHHhcCCCCceEEE--Eeecc-
Confidence 3455566665443457999999999999988887764 58999999999999999988765322222211 12222
Q ss_pred hcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCC
Q 015771 97 DISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQ 147 (400)
Q Consensus 97 ~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~ 147 (400)
.+ ..+||-||+--++.++. ......+++++.+ +|||.+++-....+.
T Consensus 123 ~~---~~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 123 DL---PGKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp G------S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred cc---CCCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 12 34899999999999995 3444445555444 389999865554444
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.53 E-value=2.1e-06 Score=81.93 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-Cceeechhh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSI 91 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~ 91 (400)
.++..++..+.... ..+.+|||+|||+|..+.++... + ..+++++|+|+.|++.|+..+... ++ ..+.
T Consensus 104 ~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~-g--~~~v~giDis~~~l~~A~~n~~~~-~~~~~~~----- 172 (250)
T PRK00517 104 PTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKL-G--AKKVLAVDIDPQAVEAARENAELN-GVELNVY----- 172 (250)
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHc-CCCceEE-----
Confidence 44455566665543 24579999999999888776643 2 236999999999999999887543 22 1111
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+.....+||+|+++... .....++.++.+. +||.||+....
T Consensus 173 ------~~~~~~~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 173 ------LPQGDLKADVIVANILA------NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred ------EccCCCCcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 11112279999986432 1223344454442 79999997543
No 83
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.53 E-value=8.3e-07 Score=85.91 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=74.2
Q ss_pred HHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHH---HHHhhcCCCCCCceeec-hhhhHhhhh
Q 015771 22 FARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRA---GQSLMQGPKDLPLIHSY-NSIQALNKD 97 (400)
Q Consensus 22 l~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~---a~~ll~~~~~~~~~~~~-~~~~~l~~~ 97 (400)
+...+++++.++|||||||.|-.+|.+.. .....|+++|++.-..-. .+.++... .. +... ..++ .
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~---~GA~~ViGiDP~~lf~~QF~~i~~~lg~~--~~-~~~lplgvE----~ 176 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLG---RGAKSVIGIDPSPLFYLQFEAIKHFLGQD--PP-VFELPLGVE----D 176 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhh---cCCCEEEEECCChHHHHHHHHHHHHhCCC--cc-EEEcCcchh----h
Confidence 44445677889999999999999998774 345689999999876543 33333221 11 1110 0111 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
++. .+.||+|++.-||.+..++-+.+..+++.++ +||.|||
T Consensus 177 Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvL 217 (315)
T PF08003_consen 177 LPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVL 217 (315)
T ss_pred ccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEE
Confidence 343 5789999999999999988877777777765 6999884
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.51 E-value=2.2e-06 Score=78.81 Aligned_cols=116 Identities=15% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
...+|||+|||+|..+.+++..++ ...+++++|.|+.|++.+++.+.... ++..+.. +....++.....||
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~-~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~-----d~~~~l~~~~~~~D 113 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVG-ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG-----EAPEILFTINEKFD 113 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe-----chhhhHhhcCCCCC
Confidence 447999999999999888776654 34589999999999999988776432 2222211 12111222235799
Q ss_pred EEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 107 LVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 107 LVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+|++...... .......+.+++ ++||.+|+. .- -++.+..+.+.+
T Consensus 114 ~V~~~~~~~~---~~~~l~~~~~~L-kpgG~lv~~-~~---~~~~~~~~~~~l 158 (198)
T PRK00377 114 RIFIGGGSEK---LKEIISASWEII-KKGGRIVID-AI---LLETVNNALSAL 158 (198)
T ss_pred EEEECCCccc---HHHHHHHHHHHc-CCCcEEEEE-ee---cHHHHHHHHHHH
Confidence 9998543222 222233333333 379999863 22 233445555544
No 85
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.50 E-value=7.9e-07 Score=74.00 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=66.6
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccEE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+|||+|||+|+.+.++.+.. ..+++++|.++..++.++..+..... ..++... ..+... ....++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~---~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D--~~~~~~--~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG---AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD--ARDLPE--PLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC---TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH--HHHHHH--TCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC---CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc--hhhchh--hccCceeEEE
Confidence 589999999999999988775 36899999999999999998865421 1122211 112211 1345789999
Q ss_pred eecccccCCCCHH-----HHHHHHHHHHhc--cCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQ-----DRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~-----~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+++--........ .-..+++.+.+. +||.++++-+
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9975554322111 123455555553 7999998743
No 86
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.45 E-value=1.7e-06 Score=78.64 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=68.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVia 110 (400)
.+|||+|||.|+.+-.+.+. ...+.++||++++.+..+.+ ..+++++. +++..+. .++++||.||+
T Consensus 15 srVLDLGCGdG~LL~~L~~~---k~v~g~GvEid~~~v~~cv~-----rGv~Viq~-----Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE---KQVDGYGVEIDPDNVAACVA-----RGVSVIQG-----DLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred CEEEecCCCchHHHHHHHHh---cCCeEEEEecCHHHHHHHHH-----cCCCEEEC-----CHHHhHhhCCCCCccEEeh
Confidence 79999999999998777764 34689999999998766543 14555543 3554553 56789999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+.+|..+..+ ..++++|++- |...|+.
T Consensus 82 sqtLQ~~~~P---~~vL~EmlRV-gr~~IVs 108 (193)
T PF07021_consen 82 SQTLQAVRRP---DEVLEEMLRV-GRRAIVS 108 (193)
T ss_pred HhHHHhHhHH---HHHHHHHHHh-cCeEEEE
Confidence 9999998654 3578888874 5555544
No 87
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.44 E-value=2.7e-06 Score=79.71 Aligned_cols=117 Identities=19% Similarity=-0.022 Sum_probs=71.4
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC------------CCc
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD------------LPL 84 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~------------~~~ 84 (400)
..|.+...++...+..+|||+|||.|..+..+++ ...+|++||.|+.+++.+..... ... ...
T Consensus 24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~----~G~~V~avD~s~~Ai~~~~~~~~-l~~~~~~~~~~~~~~~~~ 98 (218)
T PRK13255 24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAE----QGHEVLGVELSELAVEQFFAENG-LTPQTRQSGEFEHYQAGE 98 (218)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHh----CCCeEEEEccCHHHHHHHHHHcC-CCccccccccccccccCc
Confidence 3444443333222346999999999988877773 46789999999999987532110 000 000
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
++ ....++..-.+.....||+|+-.-+++.++ ++.|..++..+.+. |||.++++
T Consensus 99 v~--~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 99 IT--IYCGDFFALTAADLADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred eE--EEECcccCCCcccCCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEEE
Confidence 10 001112110011235799999999999996 77888877777664 78865543
No 88
>PRK14967 putative methyltransferase; Provisional
Probab=98.44 E-value=4.8e-06 Score=78.00 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=48.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..+|||+|||+|..+..++.. + ..+++++|.|+.|++.++..+.... +..++. .++...+ ..++||+|+
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~-~--~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~-----~d~~~~~--~~~~fD~Vi 106 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA-G--AGSVTAVDISRRAVRSARLNALLAGVDVDVRR-----GDWARAV--EFRPFDVVV 106 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc-C--CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-----Cchhhhc--cCCCeeEEE
Confidence 369999999999987776643 2 3489999999999999988775432 111111 1222112 346899999
Q ss_pred ec
Q 015771 110 AS 111 (400)
Q Consensus 110 as 111 (400)
++
T Consensus 107 ~n 108 (223)
T PRK14967 107 SN 108 (223)
T ss_pred EC
Confidence 86
No 89
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.8e-06 Score=83.97 Aligned_cols=115 Identities=23% Similarity=0.247 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCc-eeechhh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL-IHSYNSI 91 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~-~~~~~~~ 91 (400)
+++.-+|..+.+.+ .++.+|||+|||+|.+++|++.. ...+++++|+++-.++.|+..+... +++. .+.. .
T Consensus 147 pTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kL---GA~~v~g~DiDp~AV~aa~eNa~~N-~v~~~~~~~--~ 218 (300)
T COG2264 147 PTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKL---GAKKVVGVDIDPQAVEAARENARLN-GVELLVQAK--G 218 (300)
T ss_pred hhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHc---CCceEEEecCCHHHHHHHHHHHHHc-CCchhhhcc--c
Confidence 44555666666553 36789999999999999998753 3468999999999999999987642 2321 1100 0
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.... .. ...++||+||++- |-+. ......-+..+.+ |||++|+.
T Consensus 219 ~~~~-~~-~~~~~~DvIVANI-LA~v--l~~La~~~~~~lk-pgg~lIlS 262 (300)
T COG2264 219 FLLL-EV-PENGPFDVIVANI-LAEV--LVELAPDIKRLLK-PGGRLILS 262 (300)
T ss_pred ccch-hh-cccCcccEEEehh-hHHH--HHHHHHHHHHHcC-CCceEEEE
Confidence 0011 11 1336899999876 3322 1122233444443 79999976
No 90
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.42 E-value=2.3e-06 Score=77.97 Aligned_cols=127 Identities=11% Similarity=0.122 Sum_probs=67.5
Q ss_pred HHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechh----hhH
Q 015771 19 TESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNS----IQA 93 (400)
Q Consensus 19 L~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~----~~~ 93 (400)
+.++.++....+ ..+|||+|||||..+.++...+. ...+++++|.|+.| .. .++..+..... ...
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~-~~~~v~~vDis~~~------~~---~~i~~~~~d~~~~~~~~~ 89 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVG-GKGRVIAVDLQPMK------PI---ENVDFIRGDFTDEEVLNK 89 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhC-CCceEEEEeccccc------cC---CCceEEEeeCCChhHHHH
Confidence 344444444333 46999999999999887776663 23589999999865 11 12222211100 000
Q ss_pred hhhhcccCCCcccEEeeccccc-----CCCC---HHHHHHHHHHHHhc--cCCeEEEEcCCCCCch-HHHHHHHHH
Q 015771 94 LNKDISKSEREHDLVIASYVLG-----EVPS---LQDRITIVRQLWDL--TRDVLVLVEPGTPQGS-SIISQMRSH 158 (400)
Q Consensus 94 l~~~l~~~~~~~DLVias~~L~-----eL~~---~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf-~~I~~aR~~ 158 (400)
+... ...++||+|++..+.+ .+.. ......++.++++. +||.+++.-. .+..+ +.+..+|+.
T Consensus 90 l~~~--~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~-~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 90 IRER--VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF-QGEEIDEYLNELRKL 162 (188)
T ss_pred HHHH--hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc-cCccHHHHHHHHHhh
Confidence 1111 1345799999854321 1111 11223455555553 8999998533 33333 444444443
No 91
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.41 E-value=1.6e-06 Score=84.72 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhh
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSI 91 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~ 91 (400)
-.+++-+|..|.+.. .++.+|||+|||+|.++++++.. ...+|+++|.++..++.|+..+....-...+...
T Consensus 145 H~TT~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~kl---GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--- 216 (295)
T PF06325_consen 145 HPTTRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKL---GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--- 216 (295)
T ss_dssp CHHHHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHT---TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES---
T ss_pred CHHHHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHc---CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE---
Confidence 355666777776653 34579999999999999988754 2468999999999999999887643211112110
Q ss_pred hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEE
Q 015771 92 QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlV 141 (400)
... .....+||||+++-...-| ..++..+.+ ++||+||+.
T Consensus 217 --~~~--~~~~~~~dlvvANI~~~vL------~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 217 --LSE--DLVEGKFDLVVANILADVL------LELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp --CTS--CTCCS-EEEEEEES-HHHH------HHHHHHCHHHEEEEEEEEEE
T ss_pred --Eec--ccccccCCEEEECCCHHHH------HHHHHHHHHhhCCCCEEEEc
Confidence 111 1234789999986543322 233333332 279999974
No 92
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=1.1e-06 Score=81.97 Aligned_cols=110 Identities=16% Similarity=0.273 Sum_probs=79.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh-hc--ccCCCcccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK-DI--SKSEREHDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~-~l--~~~~~~~DL 107 (400)
+.+||++|||.|..+|.+.+.-++...++++.|-|+.++++.++..... ....++. .-+++. .+ +...+.+|+
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~~af--v~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRVEAF--VWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhhccc--ceeccchhccCCCCcCccce
Confidence 3489999999999999999888766689999999999999887754332 1111111 112221 11 235678999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
|++-|+|+.++ ++.....+.+|.+. |||.|++-+-|.
T Consensus 148 it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 148 ITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 99999999997 66666666666553 999999887765
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.41 E-value=2.6e-06 Score=79.10 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++... .+++++|.|++|++.+++.++... ++.++.. +....++ ..++||+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~----~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~~~~~-~~~~fD~ 147 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV----RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG-----DGWKGWP-AYAPFDR 147 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh----CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC-----CcccCCC-cCCCcCE
Confidence 34799999999998776666543 379999999999999998876532 2222211 1111121 2368999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
|++...+..++ ..+.++++ +||.|++.-.
T Consensus 148 I~~~~~~~~~~------~~l~~~L~-~gG~lv~~~~ 176 (212)
T PRK00312 148 ILVTAAAPEIP------RALLEQLK-EGGILVAPVG 176 (212)
T ss_pred EEEccCchhhh------HHHHHhcC-CCcEEEEEEc
Confidence 99998777664 12333443 7999988654
No 94
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.40 E-value=3.8e-06 Score=66.20 Aligned_cols=99 Identities=20% Similarity=0.261 Sum_probs=63.2
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+|||+|||+|..+..+.. . ...+++++|.++.+++.+++...... ...++.. +..........+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G--PGARVTGVDISPVALELARKAAAALLADNVEVLKG-----DAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc-----ChhhhccccCCceEEEEE
Confidence 589999999998888775 2 35799999999999998885332211 1222221 121111113467999999
Q ss_pred cccccCCCCHHHHHHHHHHHHh--ccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlV 141 (400)
..+++.. ......+++.+.+ +++|.+++.
T Consensus 73 ~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9998873 2233344444443 278988875
No 95
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.40 E-value=3.5e-06 Score=77.32 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=67.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..+.+++..+|+ ..+++||.|..|++.|+..+... .++.++... ..++.... ...+.+|.|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d--~~~~~~~~-~~~~~~d~v 91 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD--ANELLDKF-FPDGSLSKV 91 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC--HHHHHHhh-CCCCceeEE
Confidence 468999999999999998888763 58999999999999988776543 233222221 11111111 133579999
Q ss_pred eecccccCCCCHH--HH---HHHHHHHHhc--cCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQ--DR---ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~--~r---~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
++.+...+..... .| ..+++.+.+. +||.|++.-.
T Consensus 92 ~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 92 FLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred EEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9887544322110 11 2344444432 7999988753
No 96
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.37 E-value=3.7e-07 Score=84.47 Aligned_cols=97 Identities=23% Similarity=0.293 Sum_probs=68.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVia 110 (400)
.++||+|||||..--++.+ ....+++||+|.+|++.|... ...+ ... ..++...++ ....+||||++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~----~a~~ltGvDiS~nMl~kA~eK--g~YD-~L~-----~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRD----MADRLTGVDISENMLAKAHEK--GLYD-TLY-----VAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred ceeeecccCcCcccHhHHH----HHhhccCCchhHHHHHHHHhc--cchH-HHH-----HHHHHHHhhhccCCcccchhh
Confidence 6899999999988777764 345789999999999988652 1100 000 111111111 24578999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+-||..|.+.+.....+..+++ +||.+.+.
T Consensus 195 aDVl~YlG~Le~~~~~aa~~L~-~gGlfaFS 224 (287)
T COG4976 195 ADVLPYLGALEGLFAGAAGLLA-PGGLFAFS 224 (287)
T ss_pred hhHHHhhcchhhHHHHHHHhcC-CCceEEEE
Confidence 9999999877766677777775 79988875
No 97
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.37 E-value=7.3e-06 Score=77.50 Aligned_cols=73 Identities=21% Similarity=0.353 Sum_probs=52.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+++++..++. .+++++|.|+.|++.++..+.... ++.++. .+.... ...++||+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-----~d~~~~--~~~~~fD~ 157 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQ-----SDWFEP--LPGGKFDL 157 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE-----Cchhcc--CcCCceeE
Confidence 3468999999999999999987763 589999999999999998876432 122221 122111 23468999
Q ss_pred Eeec
Q 015771 108 VIAS 111 (400)
Q Consensus 108 Vias 111 (400)
|+++
T Consensus 158 Vi~n 161 (251)
T TIGR03534 158 IVSN 161 (251)
T ss_pred EEEC
Confidence 9984
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.32 E-value=6.2e-06 Score=79.28 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=51.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc-CC-CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ-GP-KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~-~~-~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.++..+. .. .++.++.. ++...+ ..++||+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~--~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~-----d~~~~~--~~~~fD~ 178 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERP--DAEVTAVDISPEALAVARRNAKHGLGARVEFLQG-----DWFEPL--PGGRFDL 178 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc-----cccCcC--CCCceeE
Confidence 457999999999999988887775 3589999999999999999876 11 11222211 121111 2368999
Q ss_pred Eeec
Q 015771 108 VIAS 111 (400)
Q Consensus 108 Vias 111 (400)
|+++
T Consensus 179 Iv~n 182 (275)
T PRK09328 179 IVSN 182 (275)
T ss_pred EEEC
Confidence 9985
No 99
>PRK00811 spermidine synthase; Provisional
Probab=98.31 E-value=7.3e-06 Score=79.77 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=66.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+|.+||++|||.|..+..+.... ...+|++||+++.|+++|++.+.... +-+.+... ..+....+....++|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~--~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~--~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP--SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELV--IGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC--CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEE--ECchHHHHhhCCCcc
Confidence 57899999999999988776432 35689999999999999999875321 11222110 112221222235689
Q ss_pred cEEeecccccCCCCH----HHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 106 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 106 DLVias~~L~eL~~~----~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
|+|++...-...+.. .+-.+.++++++ +||++|+- .+.|.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~-~~~~~ 195 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQ-SGSPF 195 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEe-CCCcc
Confidence 999985432222111 112233444443 79988753 44443
No 100
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.30 E-value=4.3e-06 Score=74.92 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..+++. ..+++++|.|+.|++.+++.+....++..++. +.. .++.....||+|++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~----~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~-----D~~-~~~~~~~~~d~vi~ 83 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER----AARVTAIEIDPRLAPRLREKFAAADNLTVIHG-----DAL-KFDLPKLQPYKVVG 83 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc----CCeEEEEECCHHHHHHHHHHhccCCCEEEEEC-----chh-cCCccccCCCEEEE
Confidence 368999999999999888753 35899999999999999988764333333322 121 12223346898877
Q ss_pred cc
Q 015771 111 SY 112 (400)
Q Consensus 111 s~ 112 (400)
+-
T Consensus 84 n~ 85 (169)
T smart00650 84 NL 85 (169)
T ss_pred CC
Confidence 53
No 101
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.28 E-value=3.6e-06 Score=78.32 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=66.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+|||+|||+|-.+-.++...+ ....|++||..+.+.+.|+..+.... ++.++.. +.....+ ...+||.|+
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg-~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g-----dg~~g~~-~~apfD~I~ 146 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVG-PVGRVVSVERDPELAERARRNLARLGIDNVEVVVG-----DGSEGWP-EEAPFDRII 146 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHS-TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES------GGGTTG-GG-SEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHhcC-ccceEEEECccHHHHHHHHHHHHHhccCceeEEEc-----chhhccc-cCCCcCEEE
Confidence 7999999999988777777665 35689999999999999999987532 2222222 2222222 346899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
++....++|. .++++| ++||.||+.-.
T Consensus 147 v~~a~~~ip~-----~l~~qL--~~gGrLV~pi~ 173 (209)
T PF01135_consen 147 VTAAVPEIPE-----ALLEQL--KPGGRLVAPIG 173 (209)
T ss_dssp ESSBBSS--H-----HHHHTE--EEEEEEEEEES
T ss_pred EeeccchHHH-----HHHHhc--CCCcEEEEEEc
Confidence 9999988862 355554 37999998544
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.27 E-value=1e-05 Score=74.12 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=61.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..++...+ ..+++++|.|+.|++.++..++... ++.++.. +....+......+|.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~--~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~-----d~~~~~~~~~~~~d~ 112 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCP--KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG-----SAPECLAQLAPAPDR 112 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC-----chHHHHhhCCCCCCE
Confidence 347999999999998887776554 3689999999999999998775432 2222221 111111111224566
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|+.... ... ..+++++++. +||.+++..+
T Consensus 113 v~~~~~----~~~---~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 113 VCIEGG----RPI---KEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEECC----cCH---HHHHHHHHHhcCCCeEEEEEee
Confidence 654321 112 2344554443 7999998865
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.26 E-value=7.9e-06 Score=80.89 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...+|||+|||+|..+..+++..+ ....|+++|.|++|++.|+..++..+ ++..+. .+..... .....||+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~-~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~-----gD~~~~~-~~~~~fD~ 152 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVG-EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC-----GDGYYGV-PEFAPYDV 152 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-----CChhhcc-cccCCccE
Confidence 347999999999998888777664 23469999999999999998776432 222221 1222111 12357999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEc
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|+++..+.+++. .+++ .+ ++||.+++..
T Consensus 153 Ii~~~g~~~ip~-----~~~~-~L-kpgG~Lvv~~ 180 (322)
T PRK13943 153 IFVTVGVDEVPE-----TWFT-QL-KEGGRVIVPI 180 (322)
T ss_pred EEECCchHHhHH-----HHHH-hc-CCCCEEEEEe
Confidence 999987766542 1232 23 3799888754
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.26 E-value=1.3e-05 Score=78.18 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=52.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... ++.++.. ++...+ ...+||
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~--~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~-----D~~~~~--~~~~fD 191 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP--EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS-----DLFAAL--PGRKYD 191 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhhcc--CCCCcc
Confidence 346899999999999999887765 3589999999999999999886432 1222221 222222 234799
Q ss_pred EEeec
Q 015771 107 LVIAS 111 (400)
Q Consensus 107 LVias 111 (400)
+|++.
T Consensus 192 ~Iv~N 196 (284)
T TIGR03533 192 LIVSN 196 (284)
T ss_pred EEEEC
Confidence 99985
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.25 E-value=1.8e-05 Score=80.42 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=50.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhh-hcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNK-DISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~-~l~~~~~~~DLVi 109 (400)
.+|||+|||+|..+.+++...+ ..+++++|.|+.|++.|++.++... ++.++.. ++.. ..+ ..++||+|+
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p--~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~g-----Dl~e~~l~-~~~~FDLIV 324 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERP--DAFVRASDISPPALETARKNAADLGARVEFAHG-----SWFDTDMP-SEGKWDIIV 324 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEc-----chhccccc-cCCCccEEE
Confidence 5899999999999888876664 3589999999999999999886532 1222221 2211 111 235799999
Q ss_pred ec
Q 015771 110 AS 111 (400)
Q Consensus 110 as 111 (400)
++
T Consensus 325 SN 326 (423)
T PRK14966 325 SN 326 (423)
T ss_pred EC
Confidence 94
No 106
>PTZ00146 fibrillarin; Provisional
Probab=98.25 E-value=8.1e-06 Score=79.29 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=61.2
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||+|||||+.+..+++..+. ...|++||.|+.|++.....+....|+..+...... ..........+|+|++.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~-~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~---p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGP-EGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARY---PQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccC---hhhhhcccCCCCEEEEe
Confidence 69999999999999998887753 358999999997654333333222344333221100 00111123479999888
Q ss_pred ccccCCCCHHHH-HHHHHHHHhccCCeEEEEcC
Q 015771 112 YVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 112 ~~L~eL~~~~~r-~~~i~~Lw~~~gG~LVlVE~ 143 (400)
.. .++.... ...+..++ +++|.|+|..+
T Consensus 210 va---~pdq~~il~~na~r~L-KpGG~~vI~ik 238 (293)
T PTZ00146 210 VA---QPDQARIVALNAQYFL-KNGGHFIISIK 238 (293)
T ss_pred CC---CcchHHHHHHHHHHhc-cCCCEEEEEEe
Confidence 74 2332211 11233444 38999999543
No 107
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.24 E-value=1.5e-05 Score=77.04 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=64.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+|.+||++|||+|..+..+.... ...+++++|+++++++.+++.+..... .+.+... ..+....+....++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~--~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~--~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK--SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ--IDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC--CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE--ECchHHHHHhCCCCcc
Confidence 57899999999999887766432 246899999999999999987754211 1111110 0111111112246899
Q ss_pred EEeecccccCCCC----HHHHHHHHHHHHhccCCeEEEE
Q 015771 107 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 107 LVias~~L~eL~~----~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
+||+......-+. ..+-.+.+.++++ +||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEc
Confidence 9998654222111 1122234444443 79999987
No 108
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.24 E-value=7.2e-06 Score=74.20 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+++|||||+|+.+..++-..| ..+++++|.++++++..++.++... .+.+... ..+....++.. ..+|.|+.
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p--~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv--~g~Ap~~L~~~-~~~daiFI 108 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGP--SGRVIAIERDEEALELIERNAARFG-VDNLEVV--EGDAPEALPDL-PSPDAIFI 108 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhC-CCcEEEE--eccchHhhcCC-CCCCEEEE
Confidence 36999999999999988775554 5799999999999999999888764 3332211 01112223222 27999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
.-. ..++ .+++..|.+ +||.||+
T Consensus 109 GGg-~~i~------~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 109 GGG-GNIE------EILEAAWERLKPGGRLVA 133 (187)
T ss_pred CCC-CCHH------HHHHHHHHHcCcCCeEEE
Confidence 887 4443 466777764 7888884
No 109
>PRK14968 putative methyltransferase; Provisional
Probab=98.23 E-value=2e-05 Score=70.99 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C--CCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D--LPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~--~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+..+|||+|||+|..+..++.. ..+++++|.|+.|++.+++.+.... + ...+.. ++...+ ....|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~----~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~-----d~~~~~--~~~~~ 91 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN----GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS-----DLFEPF--RGDKF 91 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh----cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEec-----cccccc--cccCc
Confidence 4478999999999988877754 3689999999999999987765321 1 222211 121112 23479
Q ss_pred cEEeecccccCCCC------------------HHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 106 DLVIASYVLGEVPS------------------LQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 106 DLVias~~L~eL~~------------------~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|+|+++..+..... ......+++++++. +||.++++.+.
T Consensus 92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 99998755432110 11123455555543 79998887654
No 110
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.23 E-value=4.7e-06 Score=76.86 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=67.1
Q ss_pred CCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHH-hhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 26 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS-LMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 26 lp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~-ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
+|+-.+.-|||||||+|...-.+. +....+++||+|+.|++.|.. .++ .+ ++ +.++-..+|+..++
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~----~~Gh~wiGvDiSpsML~~a~~~e~e--gd--li-----l~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 46 LPGPKSGLILDIGCGSGLSGSVLS----DSGHQWIGVDISPSMLEQAVERELE--GD--LI-----LCDMGEGLPFRPGT 112 (270)
T ss_pred CCCCCCcEEEEeccCCCcchheec----cCCceEEeecCCHHHHHHHHHhhhh--cC--ee-----eeecCCCCCCCCCc
Confidence 355467889999999997753333 456789999999999999985 222 12 12 12344567778899
Q ss_pred ccEEeecccccCCCC-------HHHHH-HHHHHHHhc--cCCeEEE
Q 015771 105 HDLVIASYVLGEVPS-------LQDRI-TIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 105 ~DLVias~~L~eL~~-------~~~r~-~~i~~Lw~~--~gG~LVl 140 (400)
||-||+-.++.+|-+ +..|+ .++..|... .++..|+
T Consensus 113 FDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 113 FDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred cceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 999988766665532 33443 355556653 3555554
No 111
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.5e-05 Score=73.52 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+||+||||+|-.+-.++++- .+|+.||..+++.+.|++.++... |+..++ .|-....+ ...+||.|
T Consensus 73 g~~VLEIGtGsGY~aAvla~l~----~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~-----gDG~~G~~-~~aPyD~I 142 (209)
T COG2518 73 GDRVLEIGTGSGYQAAVLARLV----GRVVSIERIEELAEQARRNLETLGYENVTVRH-----GDGSKGWP-EEAPYDRI 142 (209)
T ss_pred CCeEEEECCCchHHHHHHHHHh----CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE-----CCcccCCC-CCCCcCEE
Confidence 3799999999997766666544 389999999999999999987653 222222 22222222 45789999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+++-...++|. .++++| ++||.||+..-
T Consensus 143 ~Vtaaa~~vP~-----~Ll~QL--~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVPE-----ALLDQL--KPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCCH-----HHHHhc--ccCCEEEEEEc
Confidence 99999999983 467777 47999998876
No 112
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.22 E-value=1.5e-05 Score=78.50 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=51.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..++..+ .+.++.. ++...+ +..+||+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p--~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~-----D~~~~l--~~~~fDlI 205 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP--DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES-----DLFAAL--PGRRYDLI 205 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC-----chhhhC--CCCCccEE
Confidence 6899999999999998887765 3689999999999999999886432 1222221 222222 23579999
Q ss_pred eec
Q 015771 109 IAS 111 (400)
Q Consensus 109 ias 111 (400)
++.
T Consensus 206 vsN 208 (307)
T PRK11805 206 VSN 208 (307)
T ss_pred EEC
Confidence 985
No 113
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.19 E-value=1.1e-05 Score=76.55 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=67.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccE
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
+++..++||+|+|-|..+..++..|. +|++.|.|..|....++ + +...+.. .++. ....+||+
T Consensus 92 ~~~~~~lLDlGAGdG~VT~~l~~~f~----~v~aTE~S~~Mr~rL~~--k---g~~vl~~----~~w~----~~~~~fDv 154 (265)
T PF05219_consen 92 DWKDKSLLDLGAGDGEVTERLAPLFK----EVYATEASPPMRWRLSK--K---GFTVLDI----DDWQ----QTDFKFDV 154 (265)
T ss_pred cccCCceEEecCCCcHHHHHHHhhcc----eEEeecCCHHHHHHHHh--C---CCeEEeh----hhhh----ccCCceEE
Confidence 45667899999999999988886654 79999999999765544 1 2222221 1121 13458999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEE
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVL 140 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVl 140 (400)
|.|-|+|.--..+...+.-+++.++ |+|.|||
T Consensus 155 IscLNvLDRc~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 155 ISCLNVLDRCDRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred EeehhhhhccCCHHHHHHHHHHHhC-CCCEEEE
Confidence 9999999887767665555666553 7998885
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.19 E-value=3.5e-05 Score=73.71 Aligned_cols=73 Identities=14% Similarity=0.138 Sum_probs=51.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc-CCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~DLVi 109 (400)
+.+|||+|||+|..+.+++..++ ..+++++|.|+.|++.|+..+.... ..++.. ++...++. ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~--~~~v~~vDis~~al~~A~~N~~~~~-~~~~~~-----D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD--GIELHAADIDPAAVRCARRNLADAG-GTVHEG-----DLYDALPTALRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC-CEEEEe-----echhhcchhcCCCEeEEE
Confidence 35899999999999998887665 2589999999999999998876432 222221 12111111 135799999
Q ss_pred ec
Q 015771 110 AS 111 (400)
Q Consensus 110 as 111 (400)
+.
T Consensus 159 ~N 160 (251)
T TIGR03704 159 AN 160 (251)
T ss_pred EC
Confidence 85
No 115
>PRK01581 speE spermidine synthase; Validated
Probab=98.18 E-value=2.5e-05 Score=78.05 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh--hcCC---C-CCCceeechhhhHhhhhcccCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQGP---K-DLPLIHSYNSIQALNKDISKSE 102 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l--l~~~---~-~~~~~~~~~~~~~l~~~l~~~~ 102 (400)
-+|.+||++|||.|.++..+... + ...++++||++++|+++|+.. +... . +.+.+... ..+....+....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vv--i~Da~~fL~~~~ 224 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-E-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVH--VCDAKEFLSSPS 224 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-C-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEE--ECcHHHHHHhcC
Confidence 45789999999999887766653 2 357999999999999999962 1111 0 11222211 112222222234
Q ss_pred CcccEEeecccccCC--CCHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 103 REHDLVIASYVLGEV--PSLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 103 ~~~DLVias~~L~eL--~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
++||+|++...-..- ....-..++++.+.+. +||++|+-. +.|
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs-~sp 271 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS-NSP 271 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec-CCh
Confidence 689999987421100 0011112344444433 799988763 344
No 116
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.18 E-value=1.7e-05 Score=75.30 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=68.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc-ccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI-SKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~DLVi 109 (400)
..+|||+|||.|.+.++++...++ .++++||+.++|.+.|++.++.......++.. ..|+.... .....+||+||
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~--~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--AKIVGVEIQEEAAEMAQRNVALNPLEERIQVI--EADIKEFLKALVFASFDLII 120 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--CcEEEEEeCHHHHHHHHHHHHhCcchhceeEe--hhhHHHhhhcccccccCEEE
Confidence 579999999999999999876543 78999999999999999988653222222111 12332211 12344799999
Q ss_pred ecccccCCCCH----H--------------HHHHHHHHHHhccCCeEEEEcC
Q 015771 110 ASYVLGEVPSL----Q--------------DRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~----~--------------~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
|+==....... . +..+....++ +++|.|.+|-+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~l-k~~G~l~~V~r 171 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLL-KPGGRLAFVHR 171 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHc-cCCCEEEEEec
Confidence 96433332211 1 1112223333 37999999965
No 117
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.18 E-value=3.4e-05 Score=75.07 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=51.0
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccEE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.+|||+|||+|..+.+++..++ ..+++++|.|+.+++.|+..+..... +.++.. ++...+ ...+||+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~--~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~-----d~~~~~--~~~~fDlI 186 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP--NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQS-----NLFEPL--AGQKIDII 186 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC-----chhccC--cCCCccEE
Confidence 6899999999999999888775 35899999999999999998764321 222221 222122 22379999
Q ss_pred eec
Q 015771 109 IAS 111 (400)
Q Consensus 109 ias 111 (400)
++.
T Consensus 187 vsN 189 (284)
T TIGR00536 187 VSN 189 (284)
T ss_pred EEC
Confidence 985
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.17 E-value=2.7e-05 Score=81.81 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=51.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+|||+|||+|..+.+++..++. .+++++|.|+.|++.|+..+.... .+.++.. ++...+ ..++||
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~-----D~~~~~--~~~~fD 208 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHS-----NWFENI--EKQKFD 208 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeec-----chhhhC--cCCCcc
Confidence 3468999999999999888877653 589999999999999998875432 1222221 121122 235799
Q ss_pred EEeec
Q 015771 107 LVIAS 111 (400)
Q Consensus 107 LVias 111 (400)
+|+++
T Consensus 209 lIvsN 213 (506)
T PRK01544 209 FIVSN 213 (506)
T ss_pred EEEEC
Confidence 99983
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=3.8e-05 Score=74.67 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=51.8
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
+|||+|||+|..+.+++...+. .+|+++|+|+.+++.|+..+...+- ..+.... .++- ....++||+||++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~--~dlf---~~~~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGL-VRVLVVQ--SDLF---EPLRGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEe--eecc---cccCCceeEEEeC
Confidence 8999999999999999988763 6899999999999999998876431 1111110 1121 2234589999985
No 120
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.13 E-value=1.8e-05 Score=78.22 Aligned_cols=124 Identities=8% Similarity=0.009 Sum_probs=70.7
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCce
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLI 85 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~ 85 (400)
|-.|.......+..+.+.+....+.+|||+|||+|..+..++. ...+|+++|.|+.|++.|+..++... ++.++
T Consensus 151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~----~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~ 226 (315)
T PRK03522 151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCAT----PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQ 226 (315)
T ss_pred eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence 3344444444444444443333568999999999999888875 23689999999999999998875432 22222
Q ss_pred eechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 86 HSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 86 ~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
.. ++........+.||+|++.---..+. ..+++.|.+..-+.+|.|..+.
T Consensus 227 ~~-----D~~~~~~~~~~~~D~Vv~dPPr~G~~-----~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 227 AL-----DSTQFATAQGEVPDLVLVNPPRRGIG-----KELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred Ec-----CHHHHHHhcCCCCeEEEECCCCCCcc-----HHHHHHHHHcCCCeEEEEECCc
Confidence 21 22211111234699999763211111 1233333333225677676543
No 121
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.13 E-value=7.8e-06 Score=75.31 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=64.3
Q ss_pred CCCCeEEEEccchhHHH----HHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcC---CCCCC------ce-ee---c
Q 015771 29 FSPAKVLDFGAGTGSAF----WALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQG---PKDLP------LI-HS---Y 88 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~----~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~---~~~~~------~~-~~---~ 88 (400)
..+.+|+..||++|--. ..+.+..+. ...+++++|+|+.+++.|++-.=. ..++| +. .. .
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 36789999999999533 334443322 236999999999999999764311 11222 00 00 0
Q ss_pred hh------------hhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 89 NS------------IQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 89 ~~------------~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+. ..++.. .+...+.||+|+|-|||..+. .+.+..+++.+... |||+|+|=..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeC-HHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 00 011221 123457899999999999995 77888999999876 8999997543
No 122
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.13 E-value=2.6e-05 Score=73.82 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=41.5
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
++++|||+|||+|..+++++...+. ..+++++|.++++.+.|++.++..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~ 116 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKA 116 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence 5789999999999887777766653 458999999999999999988754
No 123
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.12 E-value=7.9e-06 Score=72.72 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=56.5
Q ss_pred EEEeCCHHHHHHHHHhhcCC-----CCCCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhcc
Q 015771 60 NLVEPSQSMQRAGQSLMQGP-----KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 134 (400)
Q Consensus 60 ~~vD~S~~ml~~a~~ll~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~ 134 (400)
+++|.|++|++.|++..+.. .++.++.. +.. +++...++||+|+++++|+++++...-..-+.+++ +|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~-----d~~-~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL-kp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG-----DAI-DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL-KP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe-----chh-hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc-Cc
Confidence 48999999999997665421 12223222 222 35556678999999999999976554444444444 38
Q ss_pred CCeEEEEcCCCCCc
Q 015771 135 RDVLVLVEPGTPQG 148 (400)
Q Consensus 135 gG~LVlVE~Gtp~G 148 (400)
||.|+|+|.+.+..
T Consensus 74 GG~l~i~d~~~~~~ 87 (160)
T PLN02232 74 GSRVSILDFNKSNQ 87 (160)
T ss_pred CeEEEEEECCCCCh
Confidence 99999999987664
No 124
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.06 E-value=5.1e-05 Score=76.61 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=69.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
....+||+|||+|..+.+++...|+ ..+++||.+..|+..+...+... .|+..+... ...+... ...+.+|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D--A~~ll~~--~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD--ARLLLEL--LPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC--HHHhhhh--CCCCceeE
Confidence 3458999999999999999988763 58999999999999887776543 233333322 1111111 24578999
Q ss_pred EeecccccCCCCHHHH---HHHHHHHHhc--cCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDR---ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r---~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|++.+..-+......| ..++..+.+. +||.+.|.-.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9987654432211111 2344444432 7999988743
No 125
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.05 E-value=5.2e-05 Score=75.35 Aligned_cols=104 Identities=15% Similarity=0.117 Sum_probs=65.4
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+|||.|||+|+.+.+++.. ...++++|.|+.|++.++..++..+ ++.... .+.. .++...+.||+|+
T Consensus 184 ~~vLDp~cGtG~~lieaa~~----~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~-----~D~~-~l~~~~~~~D~Iv 253 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLM----GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR-----GDAT-KLPLSSESVDAIA 253 (329)
T ss_pred CEEEECCCCCCHHHHHHHHh----CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe-----cchh-cCCcccCCCCEEE
Confidence 58999999999988776542 3589999999999999988876532 111111 1222 2333356899999
Q ss_pred ec--ccccCC-C--CH-HHHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 110 AS--YVLGEV-P--SL-QDRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 110 as--~~L~eL-~--~~-~~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
+. |..... . .. .-...++..+.+. +||.++++-+..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 85 322111 0 01 1123445554442 799999987754
No 126
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=7e-05 Score=72.66 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=74.5
Q ss_pred HCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 25 RLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 25 rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.++.....+|||+|||-|.....+++..| ..+++.+|.|...++.|+..+.... ....... ..++-. ...++
T Consensus 153 ~l~~~~~~~vlDlGCG~Gvlg~~la~~~p--~~~vtmvDvn~~Av~~ar~Nl~~N~-~~~~~v~--~s~~~~---~v~~k 224 (300)
T COG2813 153 TLPPDLGGKVLDLGCGYGVLGLVLAKKSP--QAKLTLVDVNARAVESARKNLAANG-VENTEVW--ASNLYE---PVEGK 224 (300)
T ss_pred hCCccCCCcEEEeCCCccHHHHHHHHhCC--CCeEEEEecCHHHHHHHHHhHHHcC-CCccEEE--Eecccc---ccccc
Confidence 34433334999999999999998888876 4689999999999999999887432 2210000 111211 12348
Q ss_pred ccEEeecccccCCCCHHH--HHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 105 HDLVIASYVLGEVPSLQD--RITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~--r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
||+||++==++.=..... -.+++..-.+. +||.|-||-.|.+.
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLP 271 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC
Confidence 999999887775432111 12344443332 79999999885444
No 127
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=2.5e-05 Score=70.73 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=66.9
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~ 97 (400)
+-.+....+++...+|+|+|||||.+.++++- + ...+|+|||++++++++++....+... +.++. . +
T Consensus 34 il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~-l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~-----~----d 101 (198)
T COG2263 34 ILWVAYLRGDLEGKTVLDLGAGTGILAIGAAL-L--GASRVLAVDIDPEALEIARANAEELLGDVEFVV-----A----D 101 (198)
T ss_pred HHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHh-c--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEEE-----c----c
Confidence 33334456788889999999999999888663 3 347999999999999999998876321 22211 1 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL 133 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~ 133 (400)
+.....++|.||.+--+.-.-...+ ..++...++.
T Consensus 102 v~~~~~~~dtvimNPPFG~~~rhaD-r~Fl~~Ale~ 136 (198)
T COG2263 102 VSDFRGKFDTVIMNPPFGSQRRHAD-RPFLLKALEI 136 (198)
T ss_pred hhhcCCccceEEECCCCccccccCC-HHHHHHHHHh
Confidence 2234567888887655554422222 2456565553
No 128
>PHA03411 putative methyltransferase; Provisional
Probab=98.03 E-value=5.1e-05 Score=73.10 Aligned_cols=76 Identities=28% Similarity=0.405 Sum_probs=53.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||+|||+|..+..+....+ ..+++++|.|+.|++.++..+. +..++.. ++.. .. ...+||+||+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~--~~~V~gVDisp~al~~Ar~n~~---~v~~v~~-----D~~e-~~-~~~kFDlIIs 132 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCK--PEKIVCVELNPEFARIGKRLLP---EAEWITS-----DVFE-FE-SNEKFDVVIS 132 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhCc---CCEEEEC-----chhh-hc-ccCCCcEEEE
Confidence 36899999999988877765543 3589999999999999988653 2223222 1221 11 2357999999
Q ss_pred cccccCCC
Q 015771 111 SYVLGEVP 118 (400)
Q Consensus 111 s~~L~eL~ 118 (400)
.-.+..++
T Consensus 133 NPPF~~l~ 140 (279)
T PHA03411 133 NPPFGKIN 140 (279)
T ss_pred cCCccccC
Confidence 77776664
No 129
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.02 E-value=3.5e-05 Score=69.54 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=60.9
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCC--ceeechhhh-HhhhhcccCC
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLP--LIHSYNSIQ-ALNKDISKSE 102 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~--~~~~~~~~~-~l~~~l~~~~ 102 (400)
.+++.+||++|||+|...++++... ...+|++.|.++ .++..+..++... ... .+... .|. ...... ...
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~--~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L-~Wg~~~~~~~-~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF--GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL-DWGDELDSDL-LEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT---T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS-HHHHH-HS-
T ss_pred hcCCceEEEECCccchhHHHHHhcc--CCceEEEeccch-hhHHHHHHHHhccccccccccCcEE-EecCcccccc-ccc
Confidence 4677899999999998888877653 256899999999 7787777775432 111 11111 111 111111 134
Q ss_pred CcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 103 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.+||+|+++-++..-.........+..+++ ++|.+++.
T Consensus 118 ~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~ 155 (173)
T PF10294_consen 118 HSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLA 155 (173)
T ss_dssp SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEE
T ss_pred ccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 589999999999875445556667777775 44544443
No 130
>PHA03412 putative methyltransferase; Provisional
Probab=98.02 E-value=4.6e-05 Score=71.84 Aligned_cols=107 Identities=13% Similarity=0.228 Sum_probs=66.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCC-CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPR-SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~-~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
+.+|||+|||+|.++++++...+. ...++++||+++.|++.|+..+.+ ..++.. ++.. .. ...+||+||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---~~~~~~-----D~~~-~~-~~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---ATWINA-----DALT-TE-FDTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---CEEEEc-----chhc-cc-ccCCccEEE
Confidence 479999999999999988875431 235899999999999999976542 333322 2211 11 235899999
Q ss_pred ecccccCCCCH---------HHHHHHHHHHHhc-cCCeEEEEcCCCCCch
Q 015771 110 ASYVLGEVPSL---------QDRITIVRQLWDL-TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 110 as~~L~eL~~~---------~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf 149 (400)
++-=...+... .--..++...++. +.|.+ |=|.+..+|
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~--ILP~~~~~~ 167 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF--IIPQMSANF 167 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE--EeCcccccC
Confidence 96433333211 1112244443333 45666 557777776
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.01 E-value=3.4e-05 Score=79.81 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=66.4
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhH
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQA 93 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~ 93 (400)
...+..+...+......+|||+|||+|+.+.+++.. ..+++++|.|+.|++.|+..++... ++.++.. +
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~----~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~-----d 353 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ----AAEVVGVEGVEAMVERARENARRNGLDNVTFYHA-----N 353 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEe-----C
Confidence 334444444443334479999999999998888754 3589999999999999998875332 2222222 1
Q ss_pred hhhhc---ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 94 LNKDI---SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 94 l~~~l---~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+...+ +....+||+|++.---..+ ...++.|.+..-+.+|.|..
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAGA------AEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcCh------HHHHHHHHhcCCCeEEEEEe
Confidence 21111 1223579999874322211 13345555432344555544
No 132
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.99 E-value=5.9e-05 Score=77.82 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=69.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.+.+|||+|||||..+..+++..+ ...+++++|.|++|++.++..++..+ ++..+... ...+....+...++||.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~-~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D--~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMG-DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAAD--SRNLLELKPQWRGYFDR 328 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhC-CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC--hhhcccccccccccCCE
Confidence 347999999999999888887764 24589999999999999998887542 22222111 01111000112457999
Q ss_pred Eeec------ccccCCCCH------HH-------HHHHHHHHHhc--cCCeEEEEcCC
Q 015771 108 VIAS------YVLGEVPSL------QD-------RITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 108 Vias------~~L~eL~~~------~~-------r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++- -++..-++. .. ..+++.+.++. +||.||.....
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9862 233322221 11 23566666664 89999987653
No 133
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=5.8e-05 Score=70.70 Aligned_cols=126 Identities=16% Similarity=0.202 Sum_probs=80.4
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC--ce--------------ee----
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP--LI--------------HS---- 87 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~--~~--------------~~---- 87 (400)
-|.|..+|||||-.|.++.+++..|+. ..+.+||+++.++..|++.++...... .. ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 378899999999999999999999974 469999999999999998876421100 00 00
Q ss_pred ------ch--hhhH------h--hhhcccCCCcccEEeeccccc--CCC-CHHHHHHHHHHHHhc--cCCeEEEEcCCCC
Q 015771 88 ------YN--SIQA------L--NKDISKSEREHDLVIASYVLG--EVP-SLQDRITIVRQLWDL--TRDVLVLVEPGTP 146 (400)
Q Consensus 88 ------~~--~~~~------l--~~~l~~~~~~~DLVias~~L~--eL~-~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp 146 (400)
.. +... + ++-+......||+|+|-.+=. +|. ..+....+++.+|+. |||+|| || |
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vE---P 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VE---P 209 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-Ec---C
Confidence 00 0000 0 000112345799998754322 332 244567889999886 889887 55 4
Q ss_pred CchHHHHHHHHHH
Q 015771 147 QGSSIISQMRSHI 159 (400)
Q Consensus 147 ~Gf~~I~~aR~~l 159 (400)
.+|..-..++..+
T Consensus 210 QpWksY~kaar~~ 222 (288)
T KOG2899|consen 210 QPWKSYKKAARRS 222 (288)
T ss_pred CchHHHHHHHHHH
Confidence 5565555555443
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.95 E-value=3.2e-05 Score=74.48 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=67.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||||..+..+++..+. ...|+++|.|+.|++.++..++... +..+... ..+.. .++...+.||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~-~g~v~a~D~~~~~l~~~~~n~~~~g-~~~v~~~--~~D~~-~~~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKN-EGAIVANEFSKSRTKVLIANINRCG-VLNVAVT--NFDGR-VFGAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCC-CCEEEEEcCCHHHHHHHHHHHHHcC-CCcEEEe--cCCHH-HhhhhccCCCEEE
Confidence 3478999999999999888877753 3589999999999999998887643 2111110 11111 1122234699998
Q ss_pred ecc------cccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 110 ASY------VLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 110 as~------~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+-- ++..-|+ .. ....++++.++. +||+||.....
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 621 1211111 11 112466666654 79999988653
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.95 E-value=7.5e-05 Score=76.97 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=69.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
.+.+|||+|||||.-+..+++..+ ...+++++|.|+.|++.++..++..+ +..+... ..+.. .++ ...++||.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~-~~g~V~a~Dis~~rl~~~~~n~~r~g-~~~v~~~--~~Da~-~l~~~~~~~fD~V 311 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMK-DQGKILAVDISREKIQLVEKHAKRLK-LSSIEIK--IADAE-RLTEYVQDTFDRI 311 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHcC-CCeEEEE--ECchh-hhhhhhhccCCEE
Confidence 346899999999999888887775 24689999999999999999887643 2211110 11111 111 124579999
Q ss_pred eec---ccccCC---CCH------H-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IAS---YVLGEV---PSL------Q-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias---~~L~eL---~~~------~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++- ..++.+ |+. + ...+++.+.++. +||.||..-..
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 861 122222 111 0 123456666654 79999887664
No 136
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.94 E-value=4.1e-05 Score=76.14 Aligned_cols=120 Identities=15% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCCeEEEEccchhHHH--HHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC----CC-C---Cc----eeechhhhHhh
Q 015771 30 SPAKVLDFGAGTGSAF--WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP----KD-L---PL----IHSYNSIQALN 95 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~--~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~----~~-~---~~----~~~~~~~~~l~ 95 (400)
.+.+|||+|||-|.-+ |.-+ ....|+++|+|..-++.|+...... .. . .+ +........+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 4579999999987544 4433 5679999999999999998888211 00 0 01 11111111222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHH-HHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHH
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDR-ITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRS 157 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r-~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~ 157 (400)
..++....+||+|-|-++||..-..+++ ..+++++.+. +||++|.. +|.+...+..+|+
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT---~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT---TPDSDEIVKRLRE 198 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE---EE-HHHHHCCHHC
T ss_pred hhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE---ecCHHHHHHHHHh
Confidence 2222223689999999999988655544 4478888775 89999965 5666655444443
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.94 E-value=8.1e-05 Score=76.62 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc--CCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK--SEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~DL 107 (400)
.+.+|||+|||||..+..+++..+ ..+++++|.|+.|++.++..++..+ .. +.......+.. .... ...+||.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g-~~-~~v~~~~~d~~-~~~~~~~~~~fD~ 312 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLG-LT-IKAETKDGDGR-GPSQWAENEQFDR 312 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcC-CC-eEEEEeccccc-cccccccccccCE
Confidence 447999999999999888887775 3589999999999999999887543 22 11100001111 1111 3457999
Q ss_pred Eee------cccccCCCCH------H-------HHHHHHHHHHhc--cCCeEEEEcCCC
Q 015771 108 VIA------SYVLGEVPSL------Q-------DRITIVRQLWDL--TRDVLVLVEPGT 145 (400)
Q Consensus 108 Via------s~~L~eL~~~------~-------~r~~~i~~Lw~~--~gG~LVlVE~Gt 145 (400)
|++ +.++...|+. . ...+++.+.++. +||.||+.....
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 985 2244443321 1 123566666653 899999997753
No 138
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.94 E-value=2.6e-05 Score=74.80 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=60.8
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeech
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYN 89 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~ 89 (400)
+||-.=.+++..+...+......+|||+|||+|+.+..+.+. ..+++++|.++.|++.++..+....++.++..
T Consensus 9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~----~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~-- 82 (258)
T PRK14896 9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR----AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEG-- 82 (258)
T ss_pred ccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh----CCEEEEEECCHHHHHHHHHHhccCCCEEEEEe--
Confidence 333333455666666554444579999999999999988865 24799999999999999987754333333322
Q ss_pred hhhHhhhhcccCCCcccEEeecccc
Q 015771 90 SIQALNKDISKSEREHDLVIASYVL 114 (400)
Q Consensus 90 ~~~~l~~~l~~~~~~~DLVias~~L 114 (400)
+.. .++ ...+|+|+++.-.
T Consensus 83 ---D~~-~~~--~~~~d~Vv~NlPy 101 (258)
T PRK14896 83 ---DAL-KVD--LPEFNKVVSNLPY 101 (258)
T ss_pred ---ccc-cCC--chhceEEEEcCCc
Confidence 121 111 2347888776443
No 139
>PLN02366 spermidine synthase
Probab=97.92 E-value=0.00017 Score=71.00 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=63.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhccc-CCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISK-SEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~-~~~~~ 105 (400)
+|++||++|||.|..+..+... + ...++++||+++.+++.+++.+.... +-+.+... ..+....+.. ..++|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi--~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-S-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLH--IGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-C-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEE--EChHHHHHhhccCCCC
Confidence 4789999999999988877654 3 45789999999999999999875421 11222111 1121111111 24679
Q ss_pred cEEeecccccCCCCH----HHHHHHHHHHHhccCCeEEEE
Q 015771 106 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 106 DLVias~~L~eL~~~----~~r~~~i~~Lw~~~gG~LVlV 141 (400)
|+|++-..-..-+.. .+-.+.+.++++ +||++++-
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~q 205 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCTQ 205 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEC
Confidence 999985432211111 111233344443 79998764
No 140
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.91 E-value=5.9e-05 Score=76.31 Aligned_cols=133 Identities=9% Similarity=0.016 Sum_probs=76.2
Q ss_pred HHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCc
Q 015771 7 LLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPL 84 (400)
Q Consensus 7 ~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~ 84 (400)
||-.|......++..+...+....+.+|||+|||+|+.+.+++. ...++++||.|+.+++.|+..++... ++.+
T Consensus 210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~----~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~ 285 (374)
T TIGR02085 210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAG----PDTQLTGIEIESEAIACAQQSAQMLGLDNLSF 285 (374)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhh----cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence 34444444444555555443323347999999999999888773 33589999999999999998875432 2222
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
+.. ++...+.....+||+|++.=--..+ -..++..+.+..-+.+|.|+.. |. .-|||.-
T Consensus 286 ~~~-----d~~~~~~~~~~~~D~vi~DPPr~G~-----~~~~l~~l~~~~p~~ivyvsc~-p~-----TlaRDl~ 344 (374)
T TIGR02085 286 AAL-----DSAKFATAQMSAPELVLVNPPRRGI-----GKELCDYLSQMAPKFILYSSCN-AQ-----TMAKDIA 344 (374)
T ss_pred EEC-----CHHHHHHhcCCCCCEEEECCCCCCC-----cHHHHHHHHhcCCCeEEEEEeC-HH-----HHHHHHH
Confidence 221 2221111112459999886322222 1234455544423567777652 22 3357764
No 141
>PRK03612 spermidine synthase; Provisional
Probab=97.89 E-value=0.00017 Score=76.21 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=63.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh--hcCCC----CCCceeechhhhHhhhhcccCCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL--MQGPK----DLPLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l--l~~~~----~~~~~~~~~~~~~l~~~l~~~~~ 103 (400)
+|++|||+|||+|..+..+.+ .+ ...++++||++++|++.+++. +...+ +.|.++.. ..|....+....+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi--~~Da~~~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV--NDDAFNWLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE--EChHHHHHHhCCC
Confidence 578999999999998887765 33 347999999999999999983 32211 11222111 1122221222346
Q ss_pred cccEEeecccccCCCCHH-----HHHHHHHHHHhccCCeEEEE
Q 015771 104 EHDLVIASYVLGEVPSLQ-----DRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 104 ~~DLVias~~L~eL~~~~-----~r~~~i~~Lw~~~gG~LVlV 141 (400)
+||+|++...-...+... +-.+.+.++++ +||.+++-
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~ 414 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQ 414 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEe
Confidence 899999975432222111 12233444443 78987754
No 142
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.87 E-value=3.9e-05 Score=68.99 Aligned_cols=105 Identities=19% Similarity=0.262 Sum_probs=66.9
Q ss_pred CeEEEEccchhHHHHHHHHH-CCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREV-WPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~-~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
.+|||+|||-|..+..+++. |+ .+.++||.|+..+++|+.++++......+. +.+.++... ....++||||+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~---~~L~GvDYs~~AV~LA~niAe~~~~~n~I~--f~q~DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQ---SKLTGVDYSEKAVELAQNIAERDGFSNEIR--FQQLDITDP-DFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCC---CCccccccCHHHHHHHHHHHHhcCCCccee--EEEeeccCC-cccccceeEEee
Confidence 39999999999999887753 43 348999999999999999987643221111 111223221 234568888865
Q ss_pred cccccCCC----CHHHH----HHHHHHHHhccCCeEEEEcC
Q 015771 111 SYVLGEVP----SLQDR----ITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~----~~~~r----~~~i~~Lw~~~gG~LVlVE~ 143 (400)
--++.-+. ....| ...+++|++ +||++||--.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItSC 182 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITSC 182 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEEec
Confidence 43332221 12233 346778886 7999988644
No 143
>PLN02476 O-methyltransferase
Probab=97.86 E-value=0.00021 Score=69.17 Aligned_cols=107 Identities=13% Similarity=0.099 Sum_probs=65.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee--chhhhHhhhhc-ccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS--YNSIQALNKDI-SKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~--~~~~~~l~~~l-~~~~~~~ 105 (400)
.++++|||+|+|+|..+++++...++ ..+++.+|.++++.+.|+..++..+-...+.. ......+..-. ....++|
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~-~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPE-SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 36789999999999888887777764 45799999999999999999976532111111 01111121111 1113589
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
|+|+.-.- ...-..+++.++++ +||.+| ++.
T Consensus 196 D~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV-~DN 228 (278)
T PLN02476 196 DFAFVDAD------KRMYQDYFELLLQLVRVGGVIV-MDN 228 (278)
T ss_pred CEEEECCC------HHHHHHHHHHHHHhcCCCcEEE-Eec
Confidence 99987642 22223334444432 677755 444
No 144
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.86 E-value=8.1e-05 Score=71.14 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=48.2
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+||-.=..++..+.+.+..-.+.+|||+|||+|..+..+++..+ .++++|.++.|++.++..+..
T Consensus 9 q~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~----~v~~iE~d~~~~~~l~~~~~~ 73 (253)
T TIGR00755 9 QNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK----KVTAIEIDPRLAEILRKLLSL 73 (253)
T ss_pred CccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC----cEEEEECCHHHHHHHHHHhCc
Confidence 34443344555555554433457999999999999999886553 599999999999999887754
No 145
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.85 E-value=0.00016 Score=68.24 Aligned_cols=56 Identities=18% Similarity=0.017 Sum_probs=40.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHH
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRA 71 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~ 71 (400)
..+..+..++..+. ..++..+|||+|||||..+..+++. ...+|++||.|+.|+..
T Consensus 58 r~~~kL~~~l~~~~---~~~~~~~vlDiG~gtG~~t~~l~~~---ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 58 RGGEKLKEALEEFN---IDVKNKIVLDVGSSTGGFTDCALQK---GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhHHHHHHHHHhcC---CCCCCCEEEEcccCCCHHHHHHHHc---CCCEEEEEeCCHHHHHH
Confidence 33444444444432 2456689999999999999888753 24689999999988865
No 146
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.85 E-value=5.2e-05 Score=72.17 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C-CCceeechhh
Q 015771 15 TLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D-LPLIHSYNSI 91 (400)
Q Consensus 15 ~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~-~~~~~~~~~~ 91 (400)
+..|++++.++ ..+++..|||+|||+|+.+..+....+ ...+++||.|+.++.+|...++... + +..++... .
T Consensus 134 V~~Vid~~~~~-~~~~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m-e 209 (328)
T KOG2904|consen 134 VEAVIDALNNS-EHSKHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM-E 209 (328)
T ss_pred HHHHHHHHhhh-hhcccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc-c
Confidence 45677777654 345677899999999999999998887 4689999999999999998886542 1 12222100 0
Q ss_pred hHhhhhcccCCCcccEEeec
Q 015771 92 QALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 92 ~~l~~~l~~~~~~~DLVias 111 (400)
.+.....+...+++|+++++
T Consensus 210 ~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred cccccccccccCceeEEecC
Confidence 00100112245789999885
No 147
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.85 E-value=7.9e-05 Score=69.15 Aligned_cols=111 Identities=22% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+.||.|||-|..+--+. -+...+|..||+++.+++.|+.-+.... ..+...+.. .+.. +.+...+||+|.+
T Consensus 56 ~~~alDcGAGIGRVTk~lL---l~~f~~VDlVEp~~~Fl~~a~~~l~~~~--~~v~~~~~~-gLQ~-f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLL---LPVFDEVDLVEPVEKFLEQAKEYLGKDN--PRVGEFYCV-GLQD-FTPEEGKYDLIWI 128 (218)
T ss_dssp -SEEEEET-TTTHHHHHTC---CCC-SEEEEEES-HHHHHHHHHHTCCGG--CCEEEEEES--GGG-----TT-EEEEEE
T ss_pred cceEEecccccchhHHHHH---HHhcCEeEEeccCHHHHHHHHHHhcccC--CCcceEEec-CHhh-ccCCCCcEeEEEe
Confidence 4689999999999985432 2345799999999999999997765411 111111100 1221 2223568999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCch
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf 149 (400)
-.+|.+|. ..+..+++++.-+. ++|.+|+=|+-+..|+
T Consensus 129 QW~lghLT-D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 129 QWCLGHLT-DEDLVAFLKRCKQALKPNGVIVVKENVSSSGF 168 (218)
T ss_dssp ES-GGGS--HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE
T ss_pred hHhhccCC-HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC
Confidence 99999997 66777777776543 7999999898777776
No 148
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.84 E-value=0.00019 Score=73.86 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=67.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-CCceeechhhhHhhhhcc--cCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-LPLIHSYNSIQALNKDIS--KSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-~~~~~~~~~~~~l~~~l~--~~~~~~D 106 (400)
.+.+|||+|||+|..+..+++..+. .+|+++|.|+.|++.++..++..+. ...+. .+... +. ...++||
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~-----~D~~~-~~~~~~~~~fD 315 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQ--AQVVALDIDAQRLERVRENLQRLGLKATVIV-----GDARD-PAQWWDGQPFD 315 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEE-----cCccc-chhhcccCCCC
Confidence 4579999999999998888877642 6899999999999999998875421 11111 11111 11 1245799
Q ss_pred EEee----cc--ccc------CCCCHHH-------HHHHHHHHHhc--cCCeEEEEcCC
Q 015771 107 LVIA----SY--VLG------EVPSLQD-------RITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 107 LVia----s~--~L~------eL~~~~~-------r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+|++ +. ++. +..+... ...++...++. +||.||+....
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9984 21 111 1111111 12455555543 89999988764
No 149
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.84 E-value=0.0001 Score=75.09 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=68.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC----CCCceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK----DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
++.+|||+|||+|..+++++. + ...++++||.|+.+++.|++.++... ++.++... ..++...+.....+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~--~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D--~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM--G-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh--C-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc--HHHHHHHHHhcCCCC
Confidence 357999999999998776542 2 34589999999999999999886432 11122221 111111111124579
Q ss_pred cEEeecccccCCCCHHHHH----------HHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 106 DLVIASYVLGEVPSLQDRI----------TIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~----------~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
|+||+.--- ...+..... ....++++ +||.|++.-.....+. ...++++.
T Consensus 295 DlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~---~~f~~~v~ 354 (396)
T PRK15128 295 DVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTS---DLFQKIIA 354 (396)
T ss_pred CEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCH---HHHHHHHH
Confidence 999975211 111111111 12223332 7999998765444443 33355544
No 150
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.83 E-value=0.00011 Score=75.99 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=67.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
.+.+|||+|||+|..+..+++..+ ...+++++|.|+.|++.++..++..+ +..+... ..+.. .+. ....||+|+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g-~~~v~~~--~~Da~-~~~-~~~~fD~Vl 323 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQ-NRGQITAVDRYPQKLEKIRSHASALG-ITIIETI--EGDAR-SFS-PEEQPDAIL 323 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHHHHHhC-CCeEEEE--eCccc-ccc-cCCCCCEEE
Confidence 347999999999998877776654 23589999999999999999887542 2211110 11121 111 345799998
Q ss_pred ec---ccccCC---------CCHHH-------HHHHHHHHHhc--cCCeEEEEcCC
Q 015771 110 AS---YVLGEV---------PSLQD-------RITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 110 as---~~L~eL---------~~~~~-------r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+- ..+..+ .+... ...++.++++. +||.||+....
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 52 111111 11111 12456666654 89999998654
No 151
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.81 E-value=0.00016 Score=74.88 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=40.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
+.+|||+|||+|..+..+++..+ ...+++++|.|+.+++.+++.++..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~-~~~~v~avDi~~~~l~~~~~n~~~~ 298 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLK-NTGKVVALDIHEHKLKLIEENAKRL 298 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 47899999999999888887663 2358999999999999999888654
No 152
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.75 E-value=0.00023 Score=68.57 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=73.2
Q ss_pred CCCeEEEEccchh----HHHHHHHHHCCC---CCcEEEEEeCCHHHHHHHHHhhcC---C-CCCC------ce-eec---
Q 015771 30 SPAKVLDFGAGTG----SAFWALREVWPR---SLEKVNLVEPSQSMQRAGQSLMQG---P-KDLP------LI-HSY--- 88 (400)
Q Consensus 30 ~p~~VLDvG~G~G----t~~~Al~~~~~~---~~~~v~~vD~S~~ml~~a~~ll~~---~-~~~~------~~-~~~--- 88 (400)
++.+|.-.||++| +.+.++.+.++. ...+|++.|+|..+++.|+.-.=. . .+++ +. ...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999999 455567777763 357899999999999998764421 0 1121 00 000
Q ss_pred hhh-hHhhh-------hc--cc-CCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcC
Q 015771 89 NSI-QALNK-------DI--SK-SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 89 ~~~-~~l~~-------~l--~~-~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
+.+ ..+.. ++ +. ..+.||+|+|-|||-.+. ...+..+++.+... +||+|+|=-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 000 01110 11 11 346799999999999995 66667777777764 7899887533
No 153
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.75 E-value=0.00029 Score=72.61 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceee
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHS 87 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~ 87 (400)
.|......++..+.+.+..-...+|||+|||+|+.++.++.. ..+|+++|.|+.|++.|+..+... .++.++..
T Consensus 272 ~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~----~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~ 347 (431)
T TIGR00479 272 VNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ----AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAG 347 (431)
T ss_pred cCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh----CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeC
Confidence 343333344444444432222369999999999999888753 358999999999999999887542 23333322
Q ss_pred chhhhHhhhhcccCCCcccEEeecc
Q 015771 88 YNSIQALNKDISKSEREHDLVIASY 112 (400)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~DLVias~ 112 (400)
. .......+......||+|++.-
T Consensus 348 d--~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 348 T--LETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred C--HHHHHHHHHhcCCCCCEEEECc
Confidence 1 1111111111234699998643
No 154
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.74 E-value=9.2e-05 Score=80.83 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=49.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC----CCceeechhhhHhhhhcccCCCccc
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+.+|||+|||+|..+++++.. ...+|++||.|+.+++.|+..++..+. +.++.. +....+....++||
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~---Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~-----D~~~~l~~~~~~fD 610 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALG---GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQA-----DCLAWLKEAREQFD 610 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEc-----cHHHHHHHcCCCcC
Confidence 479999999999998877742 235799999999999999998864321 112222 11111111245899
Q ss_pred EEeec
Q 015771 107 LVIAS 111 (400)
Q Consensus 107 LVias 111 (400)
+||+.
T Consensus 611 lIilD 615 (702)
T PRK11783 611 LIFID 615 (702)
T ss_pred EEEEC
Confidence 99983
No 155
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.73 E-value=0.00024 Score=66.41 Aligned_cols=107 Identities=13% Similarity=0.156 Sum_probs=66.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
+|++||++|.+.|-.++.++...++ ..+++.+|.++++.+.|++.++...-...+..... .+....+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEE
Confidence 6789999999999877777777764 45999999999999999999987643222221110 01111122 245799999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+.-.-=...+ .-.+.+..|++ +||.+| +++
T Consensus 137 FIDadK~~yp---~~le~~~~lLr-~GGliv-~DN 166 (219)
T COG4122 137 FIDADKADYP---EYLERALPLLR-PGGLIV-ADN 166 (219)
T ss_pred EEeCChhhCH---HHHHHHHHHhC-CCcEEE-Eee
Confidence 8765322221 22233344443 566665 443
No 156
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.73 E-value=0.00048 Score=64.85 Aligned_cols=101 Identities=12% Similarity=0.032 Sum_probs=68.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--------------CCCCceeechhhhHhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--------------KDLPLIHSYNSIQALN 95 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--------------~~~~~~~~~~~~~~l~ 95 (400)
++.+||+.|||.|.-+..+++ ...+|++||.|+..++.+.+-..-. .++.+.. .|+-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~----~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~-----gD~f 113 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS----KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYV-----ADIF 113 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh----CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEE-----ccCc
Confidence 347999999999987777663 4568999999999998775521100 0111111 1211
Q ss_pred hhcc---cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 96 KDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 96 ~~l~---~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
.++ ...++||+|.-..+|..|+ ++.|.+.++.|.+. +||.++++
T Consensus 114 -~l~~~~~~~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 114 -NLPKIANNLPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred -CCCccccccCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 111 1235799999999999997 78888888777764 78888877
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.73 E-value=0.00033 Score=65.05 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=60.6
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQ 92 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~ 92 (400)
.+.|..+.+. .+|++||++|+++|..++.++...|+ ..+++.+|.++++.+.|+..++..+. +.++.. ....
T Consensus 34 g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g-da~~ 108 (205)
T PF01596_consen 34 GQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG-DALE 108 (205)
T ss_dssp HHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES--HHH
T ss_pred HHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe-ccHh
Confidence 3455555543 46789999999999998888888874 56999999999999999999875432 112221 1111
Q ss_pred Hhhhhcc-cCCCcccEEeecc
Q 015771 93 ALNKDIS-KSEREHDLVIASY 112 (400)
Q Consensus 93 ~l~~~l~-~~~~~~DLVias~ 112 (400)
.+..-.. ...++||+|+.-.
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEES
T ss_pred hHHHHHhccCCCceeEEEEcc
Confidence 1221111 1235899998765
No 158
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.71 E-value=0.00056 Score=66.03 Aligned_cols=111 Identities=17% Similarity=0.168 Sum_probs=77.9
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CC-CceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DL-PLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~-~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
-.|.+|||+.||+|..++-+.+..+....++...|.|+..++.++.++++.+ ++ .+.... ..+ ..++.......
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~d--Afd-~~~l~~l~p~P 210 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGD--AFD-RDSLAALDPAP 210 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecC--CCC-HhHhhccCCCC
Confidence 4678999999999999998888887656799999999999999999997642 22 111111 001 11222233467
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
+|+|+|-...-+++...-...+..|... |||+||.--
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 9999998877777655444556666553 899999763
No 159
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.70 E-value=0.00035 Score=64.57 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|||+|||+|..++++... ...++++||.++.+.+.++..++... ++.++.. ++...++....+||+|
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr---~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~-----D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSR---YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNT-----NALSFLAQPGTPHNVV 125 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc-----hHHHHHhhcCCCceEE
Confidence 469999999999998754332 23589999999999999988876532 2222221 2222222123469999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGT 145 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gt 145 (400)
++.=-... .. -..++..|... ..+.+|+||...
T Consensus 126 ~~DPPy~~--g~--~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 126 FVDPPFRK--GL--LEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EECCCCCC--Ch--HHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 98643211 11 12233444331 235677788754
No 160
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.70 E-value=6.6e-05 Score=72.62 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=43.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
++..+.+.+..-.+.+|||+|||+|..+..+++.. .+++++|.|+.|++.++..+..
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~----~~v~avE~d~~~~~~~~~~~~~ 86 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA----AKVTAVEIDRDLAPILAETFAE 86 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC----CcEEEEECCHHHHHHHHHhhcc
Confidence 44444444433344799999999999998888653 3799999999999999887643
No 161
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.65 E-value=0.00021 Score=69.62 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=69.6
Q ss_pred CCCeEEEEccchhHHH----HHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCC---CCCC------c----------
Q 015771 30 SPAKVLDFGAGTGSAF----WALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGP---KDLP------L---------- 84 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~----~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~---~~~~------~---------- 84 (400)
.+.+|+..||++|--. ..+.+.++. ...+|+++|+|+.+++.|+.-.=.. .++| +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 3579999999999533 334444432 2357999999999999998753110 0111 0
Q ss_pred -eeechhh--------hHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEc
Q 015771 85 -IHSYNSI--------QALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 85 -~~~~~~~--------~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE 142 (400)
......+ .++........+.||+|+|-|+|.++. .+.+..+++++.+. |||+|++=.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0000000 112110001246899999999999995 67788888888775 899877543
No 162
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00078 Score=63.81 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=79.2
Q ss_pred HHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc
Q 015771 21 SFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK 100 (400)
Q Consensus 21 el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~ 100 (400)
.|..+++-....+|||.|.|+|+++.+++...+ ...+++..|.-+++.+.|++.++.......+.. ...|+....
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg-~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~--~~~Dv~~~~-- 159 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVG-PEGHVTTYEIREDFAKTARENLSEFGLGDRVTL--KLGDVREGI-- 159 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhC-CCceEEEEEecHHHHHHHHHHHHHhccccceEE--Eeccccccc--
Confidence 344454445568999999999999988886665 457999999999999999999986522111211 113333322
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
....||.|+. .+|++.+-.+.+..+++ +||.+++.-|..
T Consensus 160 ~~~~vDav~L-----Dmp~PW~~le~~~~~Lk-pgg~~~~y~P~v 198 (256)
T COG2519 160 DEEDVDAVFL-----DLPDPWNVLEHVSDALK-PGGVVVVYSPTV 198 (256)
T ss_pred cccccCEEEE-----cCCChHHHHHHHHHHhC-CCcEEEEEcCCH
Confidence 2347888875 46777777777777774 799999887744
No 163
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.60 E-value=0.00025 Score=69.45 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.++..+..........+|||+|||+|..+..+.+. ..+++++|.++.|++.+++.+..
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~----~~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL----AKKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh----CCcEEEEECCHHHHHHHHHHHHh
Confidence 34444544443334479999999999999888754 34799999999999999987754
No 164
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.60 E-value=0.00086 Score=64.01 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=43.2
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
.+|++||++|+++|-.+++++...++ ..+++.+|.++++.+.|+..++..+
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag 128 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAG 128 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 46789999999999888777777763 4689999999999999999997653
No 165
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.58 E-value=0.00012 Score=68.56 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC---CCCCCceee------c
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKDLPLIHS------Y 88 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~---~~~~~~~~~------~ 88 (400)
.|.++...++.-.+.+||.-|||.|.-+..+++ ...+|++||.|+..++.+.+-... ......... .
T Consensus 25 ~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~----~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 100 (218)
T PF05724_consen 25 ALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAE----QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT 100 (218)
T ss_dssp HHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHH----TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE
T ss_pred HHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHH----CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE
Confidence 344444443333446999999999988777774 457999999999999887332111 111111110 0
Q ss_pred hhhhHhhhhcc-cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 89 NSIQALNKDIS-KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 89 ~~~~~l~~~l~-~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
....|+- .++ ...++||+|.=.-+|.-|+ ++.|...++.|.+. +||.+++
T Consensus 101 ~~~gDfF-~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 101 IYCGDFF-ELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp EEES-TT-TGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred EEEcccc-cCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEE
Confidence 0001111 111 1234799999999999997 78899888888875 7888333
No 166
>PLN02672 methionine S-methyltransferase
Probab=97.58 E-value=0.00015 Score=81.54 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=42.2
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
|++.+|||+|||+|...++++..++. .+++++|+|+.+++.|+..+..
T Consensus 117 ~~~~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 117 FRDKTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CCCCEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHH
Confidence 55679999999999999999988863 4899999999999999888864
No 167
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.53 E-value=0.0012 Score=58.70 Aligned_cols=108 Identities=25% Similarity=0.256 Sum_probs=80.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
+..-||++|.|||..+-|+...-- ....++++|.|++......++..+.+ .+... ..+++..+. .....||.|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv-~~~~L~~iE~~~dF~~~L~~~~p~~~---ii~gd--a~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV-RPESLTAIEYSPDFVCHLNQLYPGVN---IINGD--AFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC-CccceEEEEeCHHHHHHHHHhCCCcc---ccccc--hhhHHHHHhhcCCCeeeeE
Confidence 346899999999999999886432 34689999999999988887776542 22211 112332222 345679999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
|++--|..+| ...+.++++++..+ .||.||.+--|
T Consensus 122 iS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 122 ISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred EeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999988887 77889999999876 69999988776
No 168
>PLN02823 spermine synthase
Probab=97.53 E-value=0.00071 Score=67.46 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.|++||.+|+|.|..+..+.... ...++++||+++++++++++.+.... .-+.++.. ..|....+....++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~--~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~--~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK--TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELI--INDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC--CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEE--EChhHHHHhhCCCCcc
Confidence 57899999999998887666533 34689999999999999998875321 11222111 1122222222356899
Q ss_pred EEeecccc-------cCCCCHHHHHH-HHHHHHhccCCeEEEEcCCC
Q 015771 107 LVIASYVL-------GEVPSLQDRIT-IVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 107 LVias~~L-------~eL~~~~~r~~-~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+|++--.= ..|-+ .+-.+ .+++.++ +||++|+ ..+.
T Consensus 179 vIi~D~~dp~~~~~~~~Lyt-~eF~~~~~~~~L~-p~Gvlv~-q~~s 222 (336)
T PLN02823 179 VIIGDLADPVEGGPCYQLYT-KSFYERIVKPKLN-PGGIFVT-QAGP 222 (336)
T ss_pred EEEecCCCccccCcchhhcc-HHHHHHHHHHhcC-CCcEEEE-eccC
Confidence 99986311 11111 12223 4455553 7898764 4443
No 169
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.51 E-value=0.002 Score=59.03 Aligned_cols=47 Identities=17% Similarity=0.011 Sum_probs=38.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
...+|||++||+|+..+.+... ....+++||.++.+++.+++.++..
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr---ga~~v~~vE~~~~a~~~~~~N~~~~ 95 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR---GAKVAFLEEDDRKANQTLKENLALL 95 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4579999999999998887743 2358999999999999998887643
No 170
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.49 E-value=0.00098 Score=61.52 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=72.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC--CCCC-CceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDL-PLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~--~~~~-~~~~~~~~~~~l 94 (400)
||+-|++.++.-. .+||+||||||.-+..++..+|. ....--|.++..+.--..-+.. ..|+ +.+.. ++
T Consensus 14 Il~vL~~~l~~~~-~~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~l-----Dv 85 (204)
T PF06080_consen 14 ILEVLKQYLPDSG-TRVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLAL-----DV 85 (204)
T ss_pred HHHHHHHHhCccC-ceEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEe-----ec
Confidence 3444444444321 26999999999988888888883 4688888888875322222221 1232 11111 11
Q ss_pred hhh-c------ccCCCcccEEeecccccCCCCHHHHHHHHH---HHHhccCCeEEEEcCCCCCc
Q 015771 95 NKD-I------SKSEREHDLVIASYVLGEVPSLQDRITIVR---QLWDLTRDVLVLVEPGTPQG 148 (400)
Q Consensus 95 ~~~-l------~~~~~~~DLVias~~L~eL~~~~~r~~~i~---~Lw~~~gG~LVlVE~Gtp~G 148 (400)
... . +.....||.|++.|++|-.+ ...-..++. ++++ +||.|++--|-...|
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p-~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISP-WSAVEGLFAGAARLLK-PGGLLFLYGPFNRDG 147 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcC-HHHHHHHHHHHHHhCC-CCCEEEEeCCcccCC
Confidence 111 0 11346899999999999776 444444444 4443 799999887744333
No 171
>PRK04148 hypothetical protein; Provisional
Probab=97.48 E-value=0.00087 Score=57.88 Aligned_cols=102 Identities=15% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHHCCCCCCCeEEEEccchhH-HHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 20 ESFARRLPGFSPAKVLDFGAGTGS-AFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~Gt-~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
..|...++..++.+|||+|||+|. .+..+.+ ...+|+++|.|+...+.++...- ..+.. |+...-
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~----~G~~ViaIDi~~~aV~~a~~~~~-----~~v~d-----Dlf~p~ 71 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKE----SGFDVIVIDINEKAVEKAKKLGL-----NAFVD-----DLFNPN 71 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHH----CCCEEEEEECCHHHHHHHHHhCC-----eEEEC-----cCCCCC
Confidence 345555566667899999999996 5555552 34699999999999888776532 11211 121100
Q ss_pred ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 99 SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
...-+.+|+|.+..- +.+....+.+|.++-+.-|+|.
T Consensus 72 ~~~y~~a~liysirp------p~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 72 LEIYKNAKLIYSIRP------PRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred HHHHhcCCEEEEeCC------CHHHHHHHHHHHHHcCCCEEEE
Confidence 112356899887663 4455667778887766677765
No 172
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.48 E-value=0.00049 Score=68.07 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=52.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-ceeec--hhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-LIHSY--NSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-~~~~~--~~~~~l~~~l~~~~~~~D 106 (400)
...+|||||||+|.....+....+ ..+++++|+++.+++.|+..++...++. .+... ....++...+....+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~--~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY--GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC--CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 447999999999866555444333 3579999999999999999987642221 11110 011122212212356899
Q ss_pred EEeeccccc
Q 015771 107 LVIASYVLG 115 (400)
Q Consensus 107 LVias~~L~ 115 (400)
+|+|+==++
T Consensus 192 livcNPPf~ 200 (321)
T PRK11727 192 ATLCNPPFH 200 (321)
T ss_pred EEEeCCCCc
Confidence 999975444
No 173
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.47 E-value=0.0012 Score=64.71 Aligned_cols=77 Identities=27% Similarity=0.366 Sum_probs=51.5
Q ss_pred CCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-CceeechhhhHhhhhcccCCCc
Q 015771 26 LPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 26 lp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..+|+.+.|||+|||+|.+.+.++.. ...+|++||.| +|.+.|+.+++.. ++ ..+... -..++ .+. ..++
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqA---GA~~vYAvEAS-~MAqyA~~Lv~~N-~~~~rItVI--~GKiE-die-LPEk 243 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQA---GAKKVYAVEAS-EMAQYARKLVASN-NLADRITVI--PGKIE-DIE-LPEK 243 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHh---CcceEEEEehh-HHHHHHHHHHhcC-CccceEEEc--cCccc-ccc-Cchh
Confidence 35799999999999999987665542 56799999986 6889999998764 32 112110 01111 121 3468
Q ss_pred ccEEeec
Q 015771 105 HDLVIAS 111 (400)
Q Consensus 105 ~DLVias 111 (400)
.|+||+-
T Consensus 244 ~DviISE 250 (517)
T KOG1500|consen 244 VDVIISE 250 (517)
T ss_pred ccEEEec
Confidence 9999874
No 174
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00022 Score=66.32 Aligned_cols=114 Identities=16% Similarity=0.242 Sum_probs=77.1
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
..++|+|||-|....-+.. +...+++.+|.|-.|++-++..-. +.+. ......+ ...+++.++++||||+|
T Consensus 74 p~a~diGcs~G~v~rhl~~---e~vekli~~DtS~~M~~s~~~~qd--p~i~---~~~~v~D-EE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRG---EGVEKLIMMDTSYDMIKSCRDAQD--PSIE---TSYFVGD-EEFLDFKENSVDLIISS 144 (325)
T ss_pred cceeecccchhhhhHHHHh---cchhheeeeecchHHHHHhhccCC--CceE---EEEEecc-hhcccccccchhhhhhh
Confidence 4799999999998765543 567899999999999998875322 1221 1111111 22455677899999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 112 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
.+||+..+...-..-.+..+ +|+|.+|-. --|...+-++|--+
T Consensus 145 lslHW~NdLPg~m~~ck~~l-KPDg~Fias----mlggdTLyELR~sl 187 (325)
T KOG2940|consen 145 LSLHWTNDLPGSMIQCKLAL-KPDGLFIAS----MLGGDTLYELRCSL 187 (325)
T ss_pred hhhhhhccCchHHHHHHHhc-CCCccchhH----HhccccHHHHHHHh
Confidence 99998876555555555555 478887733 34556666777654
No 175
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.37 E-value=0.00048 Score=67.90 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
|+.+.|||+|||+|.+...+++. ...+|++||.|.-+ +.|.+++........+... ...+. .+..+.++.|+|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi--~gkvE-di~LP~eKVDiI 131 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIA-DFARKIVKDNGLEDVITVI--KGKVE-DIELPVEKVDII 131 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHH-HHHHHHHHhcCccceEEEe--ecceE-EEecCccceeEE
Confidence 78899999999999887655543 35789999987655 8888888654322222211 01111 112235789999
Q ss_pred eecccccC
Q 015771 109 IASYVLGE 116 (400)
Q Consensus 109 ias~~L~e 116 (400)
|+-++=..
T Consensus 132 vSEWMGy~ 139 (346)
T KOG1499|consen 132 VSEWMGYF 139 (346)
T ss_pred eehhhhHH
Confidence 98665333
No 176
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.34 E-value=0.0014 Score=64.02 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=76.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-----C---CceeechhhhHhhhhcccCCC
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-----L---PLIHSYNSIQALNKDISKSER 103 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-----~---~~~~~~~~~~~l~~~l~~~~~ 103 (400)
..+||+|||-|.-++-.-. .....++++|++.--++.|+...++..+ + .++....+...+...++....
T Consensus 119 ~~~~~LgCGKGGDLlKw~k---AgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDK---AGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred cccceeccCCcccHhHhhh---hcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 5799999998865432111 2567899999999888888777654211 1 112222212223333333333
Q ss_pred cccEEeecccccCCCC-HHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHH
Q 015771 104 EHDLVIASYVLGEVPS-LQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSH 158 (400)
Q Consensus 104 ~~DLVias~~L~eL~~-~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~ 158 (400)
+||||-|.+++|.--. .+....++++..+. |||++|- ..|..+..|..+|+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg---TiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG---TIPDSDVIIKRLRAG 250 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE---ecCcHHHHHHHHHhc
Confidence 4999999999987643 33344566666654 8999983 247888888777766
No 177
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.24 E-value=0.0018 Score=63.30 Aligned_cols=92 Identities=12% Similarity=0.089 Sum_probs=59.0
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
|.|+-..+..-.+..+||.+||.|.-+.++++..+ ...+|+++|.++.|++.++..+.....+..++.. ..++...+
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~-~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~--f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLG-PKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGN--FSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCC-CCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCC--HHHHHHHH
Confidence 45555554322336999999999999999998775 3468999999999999999887652223333332 22222222
Q ss_pred ccCCCcccEEeeccc
Q 015771 99 SKSEREHDLVIASYV 113 (400)
Q Consensus 99 ~~~~~~~DLVias~~ 113 (400)
+..-.++|.|++-..
T Consensus 85 ~~~~~~vDgIl~DLG 99 (296)
T PRK00050 85 AEGLGKVDGILLDLG 99 (296)
T ss_pred HcCCCccCEEEECCC
Confidence 211126787766443
No 178
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.21 E-value=0.005 Score=60.90 Aligned_cols=99 Identities=17% Similarity=0.282 Sum_probs=69.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHH-HHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~-~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
...+|+|+|.|..+-.+...|| .+-+++.....+- .+..+.. .+..+.. +.-+++| +-|+|++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp----~ik~infdlp~v~~~a~~~~~---gV~~v~g-----dmfq~~P----~~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP----HIKGINFDLPFVLAAAPYLAP---GVEHVAG-----DMFQDTP----KGDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC----CCceeecCHHHHHhhhhhhcC---Ccceecc-----cccccCC----CcCeEEE
Confidence 6899999999999988777776 3667777666544 4444321 1221111 1111233 4579999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQ 147 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~ 147 (400)
-.+|++++ .++-..++++.|+. ++|.+|++|.=+|.
T Consensus 243 kWiLhdwt-DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 243 KWILHDWT-DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred EeecccCC-hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 99999997 66788999999986 79999999996664
No 179
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.19 E-value=0.00058 Score=70.67 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=56.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCC--CCCcEEEEEeCCHHHHHHHHHhhc--CCCC-CCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWP--RSLEKVNLVEPSQSMQRAGQSLMQ--GPKD-LPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~--~~~~~v~~vD~S~~ml~~a~~ll~--~~~~-~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
+...|||+|||+|.++..+..... ....+|++||.|+.+....+.++. ...+ +.+++. ++. .+. ...+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~-----d~r-~v~-lpek 258 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG-----DMR-EVE-LPEK 258 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES------TT-TSC-HSS-
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC-----ccc-CCC-CCCc
Confidence 357899999999998765443220 135699999999988777666533 2222 222322 222 121 2358
Q ss_pred ccEEee----cccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 105 HDLVIA----SYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 105 ~DLVia----s~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
+|+||+ ++..+|+. ++ -+...++.+ +++|.+|
T Consensus 259 vDIIVSElLGsfg~nEl~-pE-~Lda~~rfL-kp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGSFGDNELS-PE-CLDAADRFL-KPDGIMI 294 (448)
T ss_dssp EEEEEE---BTTBTTTSH-HH-HHHHGGGGE-EEEEEEE
T ss_pred eeEEEEeccCCccccccC-HH-HHHHHHhhc-CCCCEEe
Confidence 999987 55667763 32 233444444 3566655
No 180
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.19 E-value=0.012 Score=58.28 Aligned_cols=123 Identities=9% Similarity=0.144 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhh
Q 015771 15 TLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQ 92 (400)
Q Consensus 15 ~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~ 92 (400)
+.+...+|...++. +..|+|+|||.|.=+.-+.+.+.. ....|+.||+|.++++.+...+... ..|.+....-+.
T Consensus 63 L~~~~~~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-~~p~l~v~~l~g 139 (319)
T TIGR03439 63 LKKHSSDIAASIPS--GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-NFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-cCCCeEEEEEEe
Confidence 34445666766653 348999999999765544444421 2468999999999999887777611 223222211112
Q ss_pred Hhhhh---ccc--CCCcccEEe-ecccccCCCCHHHHHHHHHHHHh-c--cCCeEEEE
Q 015771 93 ALNKD---ISK--SEREHDLVI-ASYVLGEVPSLQDRITIVRQLWD-L--TRDVLVLV 141 (400)
Q Consensus 93 ~l~~~---l~~--~~~~~DLVi-as~~L~eL~~~~~r~~~i~~Lw~-~--~gG~LVlV 141 (400)
++... ++. ......+|+ .+.++.+++ +.+...+++++.+ . ++|.|+|-
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~-~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFS-RPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCC-HHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 22221 111 122345554 567999986 6777888888876 3 67776663
No 181
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.17 E-value=0.0023 Score=61.02 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh-hhcc-cCCCcccE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN-KDIS-KSEREHDL 107 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~-~~l~-~~~~~~DL 107 (400)
.+.+||+.|.|+|+++.+++...+ ...+|+..|..++..+.|++.++......++.. ...++. ..+. .....+|.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~-p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~--~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVG-PTGHVYTYEFREDRAEKARKNFERHGLDDNVTV--HHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEE--EES-GGCG--STT-TTSEEE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhC-CCeEEEccccCHHHHHHHHHHHHHcCCCCCcee--EecceecccccccccCcccE
Confidence 347999999999999999887665 346899999999999999999986532222221 112332 1221 12356887
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchH
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~ 150 (400)
|+. .||++......+.+.++++||.|+..-|-...--+
T Consensus 117 vfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~ 154 (247)
T PF08704_consen 117 VFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQK 154 (247)
T ss_dssp EEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHH
T ss_pred EEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHH
Confidence 664 57777766666666665579999988775433333
No 182
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.11 E-value=0.0019 Score=61.86 Aligned_cols=126 Identities=16% Similarity=0.262 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHCC--CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC---cee---
Q 015771 15 TLLVTESFARRLP--GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---LIH--- 86 (400)
Q Consensus 15 ~~~vL~el~~rlp--~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~---~~~--- 86 (400)
+...|..+.+.+. ..++.++||||||| +...++. .- +...+|++.|.++.-++..++=++...... +..
T Consensus 39 ~~~~L~~l~~~f~~g~~~g~~llDiGsGP-tiy~~ls-a~-~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~ 115 (256)
T PF01234_consen 39 LLFFLKNLHETFSSGGVKGETLLDIGSGP-TIYQLLS-AC-EWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC 115 (256)
T ss_dssp HHHHHHHHHHHHHTSSS-EEEEEEES-TT---GGGTT-GG-GTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcCCCEEEEeCCCc-HHHhhhh-HH-HhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence 3335555555542 45667999999999 3322221 11 245789999999988776666555431111 100
Q ss_pred ---ec-hhh----h------------Hhhhh--ccc---CCCcccEEeecccccCCC-CHHHHHHHHHHHHhc--cCCeE
Q 015771 87 ---SY-NSI----Q------------ALNKD--ISK---SEREHDLVIASYVLGEVP-SLQDRITIVRQLWDL--TRDVL 138 (400)
Q Consensus 87 ---~~-~~~----~------------~l~~~--l~~---~~~~~DLVias~~L~eL~-~~~~r~~~i~~Lw~~--~gG~L 138 (400)
.. ..+ . ++.+. +.. ...+||+|+++++|.... +.++=...++++.+. |||+|
T Consensus 116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~L 195 (256)
T PF01234_consen 116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHL 195 (256)
T ss_dssp HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 00 000 0 11110 111 123599999999997653 455556788888775 89999
Q ss_pred EEEcC
Q 015771 139 VLVEP 143 (400)
Q Consensus 139 VlVE~ 143 (400)
|++.-
T Consensus 196 il~~~ 200 (256)
T PF01234_consen 196 ILAGV 200 (256)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98854
No 183
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.03 E-value=0.00078 Score=69.39 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=63.2
Q ss_pred HHHHHHHHCCC--C--CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEE-----eCCHHHHHHHHHhhcCCCCCCceeec
Q 015771 18 VTESFARRLPG--F--SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLV-----EPSQSMQRAGQSLMQGPKDLPLIHSY 88 (400)
Q Consensus 18 vL~el~~rlp~--~--~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~v-----D~S~~ml~~a~~ll~~~~~~~~~~~~ 88 (400)
.++.|.+-++. + .-..+||+|||+|++...+.+ . .|+.+ |..+...+.|.+ + .+|.+-..
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~----r--~V~t~s~a~~d~~~~qvqfale---R--Gvpa~~~~ 169 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLE----R--NVTTMSFAPNDEHEAQVQFALE---R--GVPAMIGV 169 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhh----C--CceEEEcccccCCchhhhhhhh---c--Ccchhhhh
Confidence 34455555544 2 235789999999998766663 1 23333 333333333322 1 24432111
Q ss_pred hhhhHhhhhcccCCCcccEEeecccccCCCCHHH-HHHHHHHHHhccCCeEEEEcC
Q 015771 89 NSIQALNKDISKSEREHDLVIASYVLGEVPSLQD-RITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 89 ~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~-r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
-..+.+|.+.+.||+|-|+.++..-..... .+--+.++++ |||++|+.-|
T Consensus 170 ----~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~p 220 (506)
T PF03141_consen 170 ----LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGP 220 (506)
T ss_pred ----hccccccCCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecCC
Confidence 013456778899999999998864432221 2234567775 8999998866
No 184
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.93 E-value=0.0017 Score=65.18 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.|.......+..+.+.+. ..+.+|||+|||+|+.+++++... .+|++||.|++|++.|++.+..
T Consensus 178 ~N~~~~~~l~~~v~~~~~-~~~~~vlDl~~G~G~~sl~la~~~----~~v~~vE~~~~av~~a~~n~~~ 241 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQ-GSKGDLLELYCGNGNFSLALAQNF----RRVLATEIAKPSVNAAQYNIAA 241 (353)
T ss_pred CCHHHHHHHHHHHHHHhh-cCCCcEEEEeccccHHHHHHHHhC----CEEEEEECCHHHHHHHHHHHHH
Confidence 344444444555554432 123479999999999999888543 4899999999999999988754
No 185
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.93 E-value=0.003 Score=58.65 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLVi 109 (400)
+.++|||||=......... ...+|+.||.++. ...+..+. .+...+| ...++||+|+
T Consensus 52 ~lrlLEVGals~~N~~s~~-----~~fdvt~IDLns~-------------~~~I~qqD----Fm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTS-----GWFDVTRIDLNSQ-------------HPGILQQD----FMERPLPKNESEKFDVIS 109 (219)
T ss_pred cceEEeecccCCCCccccc-----CceeeEEeecCCC-------------CCCceeec----cccCCCCCCcccceeEEE
Confidence 3699999987443322222 2345999997652 11111211 1222333 2457899999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCe-----EEEEcCC
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDV-----LVLVEPG 144 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~-----LVlVE~G 144 (400)
+|.||+.+|++.+|-+.++...+. ++|. |.||=|-
T Consensus 110 ~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 110 LSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 999999999999998877766543 7888 8888663
No 186
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.88 E-value=0.0063 Score=55.60 Aligned_cols=104 Identities=21% Similarity=0.262 Sum_probs=62.6
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
...++|||+|+|+|...+|++.. ....++..|+.+..........+... ++.+++. + .+. ....+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a---GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~-----d---~~g-~~~~~Dl 145 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA---GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHA-----D---LIG-SPPAFDL 145 (218)
T ss_pred cccceeeecccccChHHHHHHHh---hhHHHHhcCCChHHHHHhhcchhhccceeEEeec-----c---ccC-CCcceeE
Confidence 45689999999999988876632 34678888998877666555444321 1111111 1 122 5568999
Q ss_pred EeecccccCCCCHHHH-HHHHHHHHhccCCeEEEEcCCCC
Q 015771 108 VIASYVLGEVPSLQDR-ITIVRQLWDLTRDVLVLVEPGTP 146 (400)
Q Consensus 108 Vias~~L~eL~~~~~r-~~~i~~Lw~~~gG~LVlVE~Gtp 146 (400)
|+++-++.+=+ ..+| +.....+.. .|-.+++-+||-+
T Consensus 146 ~LagDlfy~~~-~a~~l~~~~~~l~~-~g~~vlvgdp~R~ 183 (218)
T COG3897 146 LLAGDLFYNHT-EADRLIPWKDRLAE-AGAAVLVGDPGRA 183 (218)
T ss_pred EEeeceecCch-HHHHHHHHHHHHHh-CCCEEEEeCCCCC
Confidence 99999887654 3333 333444433 2344444466643
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0045 Score=57.07 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=63.0
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-----ceeec--hhhhHhhhhcccCCCc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-----LIHSY--NSIQALNKDISKSERE 104 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-----~~~~~--~~~~~l~~~l~~~~~~ 104 (400)
.+.||+|+|+|-++-.+....+......++||.-+++++.+++.+...-..+ +-... ....+-.. ......+
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~-g~~e~a~ 162 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK-GYAEQAP 162 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc-cCCccCC
Confidence 5899999999987766554444444556999999999999999886432100 00000 00011111 1234678
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
||-|.+.-.-.+++ ++++.+|. +||.||
T Consensus 163 YDaIhvGAaa~~~p-----q~l~dqL~--~gGrll 190 (237)
T KOG1661|consen 163 YDAIHVGAAASELP-----QELLDQLK--PGGRLL 190 (237)
T ss_pred cceEEEccCccccH-----HHHHHhhc--cCCeEE
Confidence 99999997777765 45777775 455554
No 188
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.85 E-value=0.0061 Score=58.31 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
+++.|...-+.-.+..||++|.|||..+..+.+ ...+|+++|.++.|....+++.++..
T Consensus 46 v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe----~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 46 VIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLE----AGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred HHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHH----hcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 445555544433457999999999999999884 56799999999999998888887654
No 189
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0027 Score=55.29 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhh
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALN 95 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~ 95 (400)
..+.-|..-.+++.++.|+|+|||.|-+..+++ ++ ....+.++|+.++.++++...+.... ++..+.+. +.
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s--m~-~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd-----il 106 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS--MP-KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD-----IL 106 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhh--cC-CCceEEeeecCHHHHHHHhhchHHhhhhhheeeee-----cc
Confidence 345555556678889999999999999987655 22 45789999999999999988776532 11222221 11
Q ss_pred hhcccCCCcccEEeecccccC
Q 015771 96 KDISKSEREHDLVIASYVLGE 116 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~e 116 (400)
. +....+.||.++..--++.
T Consensus 107 d-le~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 107 D-LELKGGIFDTAVINPPFGT 126 (185)
T ss_pred c-hhccCCeEeeEEecCCCCc
Confidence 1 1123467888777665543
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.79 E-value=0.01 Score=57.72 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=73.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCccc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
+|++||-+|.|.|..++.+...- ...++++||+++.+++.+++-+..... -|.+... ++|--+-+.....+||
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~--~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~--i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL--PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII--IDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC--CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE--eccHHHHHHhCCCcCC
Confidence 45799999999999999988654 368999999999999999999876431 1322211 1121112222234899
Q ss_pred EEeecccccCCCC----HHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 107 LVIASYVLGEVPS----LQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 107 LVias~~L~eL~~----~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
+||+--+=..=+. ..+-.+.++++++ ++|++|.- .|+|-..
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q-~~~~~~~ 196 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRRALK-EDGIFVAQ-AGSPFLQ 196 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHHhcC-CCcEEEEe-cCCcccc
Confidence 9998554331110 1244456666664 68988877 6666655
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.0045 Score=59.32 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=52.6
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 86 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~ 86 (400)
||+-.=..+++.+......-...+||+||+|.|+.+..+.+ ...+|+++|+++.|....+..+....++..++
T Consensus 10 QnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~----~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~ 82 (259)
T COG0030 10 QNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLE----RAARVTAIEIDRRLAEVLKERFAPYDNLTVIN 82 (259)
T ss_pred cccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh----hcCeEEEEEeCHHHHHHHHHhcccccceEEEe
Confidence 33333345566666554333357999999999999999885 45689999999999998888876444555444
No 192
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.76 E-value=0.02 Score=49.72 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=57.8
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHHHHHHhhcCCCC-C-CceeechhhhHhhhhcccCCCc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQRAGQSLMQGPKD-L-PLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~~-~-~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..+.+|+|+|||-|.++++++..|+. ...+|++||.++.+.+.+..+.+.... . .... .....+... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS--FIQGDIADE--SSSDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch--hhccchhhh--cccCC
Confidence 45679999999999999998875532 346899999999999988887765431 1 1010 000111110 12456
Q ss_pred ccEEeecccccCCC
Q 015771 105 HDLVIASYVLGEVP 118 (400)
Q Consensus 105 ~DLVias~~L~eL~ 118 (400)
.+++|.-|+=..|.
T Consensus 100 ~~~~vgLHaCG~Ls 113 (141)
T PF13679_consen 100 PDILVGLHACGDLS 113 (141)
T ss_pred CeEEEEeecccchH
Confidence 78999999988885
No 193
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.75 E-value=0.0044 Score=59.16 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=61.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCC-cc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSER-EH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~-~~ 105 (400)
+|++||=+|.|.|..+..+.... ...++++||+++.+++.|++.+..... -+.++.. .++-..-+....+ +|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~--~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~--~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP--PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRII--IGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST--T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEE--ESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcC--CcceEEEEecChHHHHHHHHhchhhccccCCCceEEE--EhhhHHHHHhccCCcc
Confidence 68999999999999988776432 357899999999999999987753211 1222111 1111111222234 89
Q ss_pred cEEeecccccCCCCH----HHHHHHHHHHHhccCCeEEEEc
Q 015771 106 DLVIASYVLGEVPSL----QDRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 106 DLVias~~L~eL~~~----~~r~~~i~~Lw~~~gG~LVlVE 142 (400)
|+|++--.-..-+.. .+-.+.+++.++ ++|++++=-
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence 999974332111111 133344555553 789988765
No 194
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.73 E-value=0.0029 Score=63.81 Aligned_cols=66 Identities=20% Similarity=0.110 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
|=.|-.....+++.+...+.. .+.+|||++||+|+.+++++.. ..+|++||.|+.|++.+++.+..
T Consensus 185 ~Q~N~~~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~----~~~v~~vE~~~~ai~~a~~N~~~ 250 (362)
T PRK05031 185 TQPNAAVNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN----FRRVLATEISKPSVAAAQYNIAA 250 (362)
T ss_pred eccCHHHHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh----CCEEEEEECCHHHHHHHHHHHHH
Confidence 334444444555555554422 2357999999999999988854 34899999999999999987753
No 195
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.72 E-value=0.00066 Score=62.30 Aligned_cols=96 Identities=18% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCCC--CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 27 PGFS--PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 27 p~~~--p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
|+|+ |.++||+|+|-|..+..++. ...+|++.|.|..|++..+.+ +..++.... .. ..+-+
T Consensus 107 p~w~~~~~~lLDlGAGdGeit~~m~p----~feevyATElS~tMr~rL~kk-----~ynVl~~~e---w~-----~t~~k 169 (288)
T KOG3987|consen 107 PAWGQEPVTLLDLGAGDGEITLRMAP----TFEEVYATELSWTMRDRLKKK-----NYNVLTEIE---WL-----QTDVK 169 (288)
T ss_pred CccCCCCeeEEeccCCCcchhhhhcc----hHHHHHHHHhhHHHHHHHhhc-----CCceeeehh---hh-----hcCce
Confidence 4554 58999999999998877664 345799999999999876653 111222111 11 12347
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
||||.|-++|.--.++...++-|+..++..+|..|
T Consensus 170 ~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvi 204 (288)
T KOG3987|consen 170 LDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVI 204 (288)
T ss_pred eehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEE
Confidence 99999999998776666666666666665577544
No 196
>PRK00536 speE spermidine synthase; Provisional
Probab=96.66 E-value=0.012 Score=56.60 Aligned_cols=102 Identities=15% Similarity=0.100 Sum_probs=65.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhhhcccCCCcc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
-+|++||=+|.|-|.++..+... ..+|+.||+++++++.+++-+.... +-|.+.... .+. ....++|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh----~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~---~~~---~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY----DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLL---DLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc----CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee---hhh---hccCCcC
Confidence 46899999999999998776632 2499999999999999999665432 123332211 011 1123689
Q ss_pred cEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 106 DLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 106 DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
|+||+--+ ++ .+-.+.+++.++ +||++|.= .|+|-
T Consensus 141 DVIIvDs~----~~-~~fy~~~~~~L~-~~Gi~v~Q-s~sp~ 175 (262)
T PRK00536 141 DLIICLQE----PD-IHKIDGLKRMLK-EDGVFISV-AKHPL 175 (262)
T ss_pred CEEEEcCC----CC-hHHHHHHHHhcC-CCcEEEEC-CCCcc
Confidence 99998743 22 233345666664 78888743 34443
No 197
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.64 E-value=0.0074 Score=54.39 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHCCCCC---CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHH
Q 015771 19 TESFARRLPGFS---PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 19 L~el~~rlp~~~---p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ 67 (400)
|.|+-++.+-+. +.+|||+||+||..+-.+.+... ....+++||..+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~-~~~~v~avDl~~~ 59 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGG-PAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTT-TEEEEEEEESSST
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeeccc-ccceEEEEecccc
Confidence 455555555333 47999999999999988875441 2479999998765
No 198
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.028 Score=50.88 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
.|.-+||+|||+|..+-.++.... ...-+.++|+|+.+++..+.-++... .+..+. .++...+. .++.|++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~-~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~-----tdl~~~l~--~~~VDvL 114 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIG-PQALYLATDINPEALEATLETARCNRVHIDVVR-----TDLLSGLR--NESVDVL 114 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhcCCccceee-----hhHHhhhc--cCCccEE
Confidence 367899999999998888777665 35678999999999988766654322 222222 23444443 3789999
Q ss_pred eec--ccccC
Q 015771 109 IAS--YVLGE 116 (400)
Q Consensus 109 ias--~~L~e 116 (400)
+.+ |+..+
T Consensus 115 vfNPPYVpt~ 124 (209)
T KOG3191|consen 115 VFNPPYVPTS 124 (209)
T ss_pred EECCCcCcCC
Confidence 875 55443
No 199
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.53 E-value=0.013 Score=62.08 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCC------CCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPR------SLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~------~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
.+.+|||.|||+|..+.++...++. ....++++|+++.++..++..+...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 3569999999999999888766531 1257899999999999998887544
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.43 E-value=0.027 Score=58.70 Aligned_cols=116 Identities=13% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc-cCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS-KSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~DLV 108 (400)
.+.+|||++||||.=+..+++.++. ...++++|+|+..++..+..++..+ +..+... ..+.. .+. .....||.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~-~g~lvA~D~~~~R~~~L~~nl~r~G-~~nv~v~--~~D~~-~~~~~~~~~fD~I 187 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNN-QGAIVANEYSASRVKVLHANISRCG-VSNVALT--HFDGR-VFGAALPETFDAI 187 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHHcC-CCeEEEE--eCchh-hhhhhchhhcCeE
Confidence 3479999999999988888887753 4589999999999998888887653 2211110 01111 111 123569999
Q ss_pred e----ecc--cccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC-CCCchH
Q 015771 109 I----ASY--VLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG-TPQGSS 150 (400)
Q Consensus 109 i----as~--~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G-tp~Gf~ 150 (400)
+ ||- ++.--|+ .+ -..+++.+.|+. +||.||-.--. +|.--+
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 8 442 1221111 11 113466666654 89999887664 344333
No 201
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.31 E-value=0.027 Score=52.30 Aligned_cols=60 Identities=15% Similarity=0.198 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+..+..+|.++. + -.....+|+|||.|..+.+++-..+ ..+.++||..+...++|+.+.+
T Consensus 28 ~~~~~~il~~~~--l--~~~dvF~DlGSG~G~~v~~aal~~~--~~~~~GIEi~~~~~~~a~~~~~ 87 (205)
T PF08123_consen 28 PEFVSKILDELN--L--TPDDVFYDLGSGVGNVVFQAALQTG--CKKSVGIEILPELHDLAEELLE 87 (205)
T ss_dssp HHHHHHHHHHTT------TT-EEEEES-TTSHHHHHHHHHH----SEEEEEE-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--C--CCCCEEEECCCCCCHHHHHHHHHcC--CcEEEEEEechHHHHHHHHHHH
Confidence 345556665543 1 1226899999999998887665543 5679999999998888876554
No 202
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.21 E-value=0.033 Score=53.93 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCCeEEEEccchhHHH-HHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC----CCceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAF-WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD----LPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~-~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~----~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
.|.+|+=+||||--.+ +-++.... ....++++|.+++..+++++++....+ +.++.. +.. +....-..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~-~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~-----d~~-~~~~dl~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHG-PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITA-----DVL-DVTYDLKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HT-T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES------GG-GG-GG---
T ss_pred ccceEEEEcCCCcchHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEec-----chh-cccccccc
Confidence 5779999999976432 22332221 235789999999999999999873211 122221 111 11112357
Q ss_pred ccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEc
Q 015771 105 HDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVE 142 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE 142 (400)
||+|+.+-...- +.++..+++.+|++. +.|.+|++-
T Consensus 193 ~DvV~lAalVg~--~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVFLAALVGM--DAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEEEhhhccc--ccchHHHHHHHHHhhCCCCcEEEEe
Confidence 999987765543 244567899999886 567777775
No 203
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.20 E-value=0.013 Score=53.47 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=65.6
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC---ceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP---LIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~---~~~~~~~~~~l 94 (400)
+|+-|... .+...++||+=||+|+..+.+.. ....+|++||.|....+..++.++...... .+... ....+
T Consensus 32 lFniL~~~--~~~g~~vLDLFaGSGalGlEALS---RGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d-~~~~l 105 (183)
T PF03602_consen 32 LFNILQPR--NLEGARVLDLFAGSGALGLEALS---RGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD-AFKFL 105 (183)
T ss_dssp HHHHHHCH---HTT-EEEETT-TTSHHHHHHHH---TT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS-HHHHH
T ss_pred HHHHhccc--ccCCCeEEEcCCccCccHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC-HHHHH
Confidence 45555544 13458999999999998875442 356799999999999999988887543211 11111 11112
Q ss_pred hhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCCC
Q 015771 95 NKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTP 146 (400)
Q Consensus 95 ~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gtp 146 (400)
.. ......+||+|.+-==...- . ....++..|.+. ..+-+|++|....
T Consensus 106 ~~-~~~~~~~fDiIflDPPY~~~--~-~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 106 LK-LAKKGEKFDIIFLDPPYAKG--L-YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HH-HHHCTS-EEEEEE--STTSC--H-HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred Hh-hcccCCCceEEEECCCcccc--h-HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 21 11235789999884221111 1 023455555542 3567888888554
No 204
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.0055 Score=54.34 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=70.7
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccc-hhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCc
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPL 84 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G-~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~ 84 (400)
||+.=+-.+-+|.+..+ +...+||++|.| +|.+.+.++-.-+ ...|...|.+...++-.+++.... .....
T Consensus 11 wpseeala~~~l~~~n~----~rg~~ilelgggft~laglmia~~a~--~~~v~ltdgne~svrnv~ki~~~n~~s~~ts 84 (201)
T KOG3201|consen 11 WPSEEALAWTILRDPNK----IRGRRILELGGGFTGLAGLMIACKAP--DSSVWLTDGNEESVRNVEKIRNSNMASSLTS 84 (201)
T ss_pred cccHHHHHHHHHhchhH----HhHHHHHHhcCchhhhhhhheeeecC--CceEEEecCCHHHHHHHHHHHhcccccccce
Confidence 44443444455555443 445789999999 5555444443333 468999999999888777765432 11111
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
... ..+............+||+|+++-.+..-...++....|+.+++ |.|.-++.-|
T Consensus 85 c~v-lrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsP 141 (201)
T KOG3201|consen 85 CCV-LRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSP 141 (201)
T ss_pred ehh-hHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecC
Confidence 111 11111111111234589999999987653222333445555553 6776666655
No 205
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.06 E-value=0.013 Score=53.39 Aligned_cols=110 Identities=22% Similarity=0.306 Sum_probs=63.1
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+++|+|+|.|--.+.++-.+|+ .+++.+|++..-....+...... .|+..++.. +.. ......||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~--~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R-----~E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPD--LQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR-----AEE--PEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TT--SEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES------HHH--TTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCC--CcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee-----ecc--cccCCCccEEEe
Confidence 7999999999766666656663 57999999987555444444332 233333321 222 224578999988
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHH
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSH 158 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~ 158 (400)
--+ .. ......+...+++ ++|.+++. .| +...+-+.+++..
T Consensus 122 RAv-~~---l~~l~~~~~~~l~-~~G~~l~~-KG-~~~~~El~~~~~~ 162 (184)
T PF02527_consen 122 RAV-AP---LDKLLELARPLLK-PGGRLLAY-KG-PDAEEELEEAKKA 162 (184)
T ss_dssp ESS-SS---HHHHHHHHGGGEE-EEEEEEEE-ES-S--HHHHHTHHHH
T ss_pred ehh-cC---HHHHHHHHHHhcC-CCCEEEEE-cC-CChHHHHHHHHhH
Confidence 654 22 3344455555554 68888876 33 2333445455444
No 206
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=95.94 E-value=0.019 Score=58.38 Aligned_cols=97 Identities=15% Similarity=0.048 Sum_probs=59.0
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.+|||++||+|...+.++...+ ..+|+++|.++.+++.++..++.. ++.... ....+....+.. ...||+|++-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~--~~~V~a~Din~~Av~~a~~N~~~N-~~~~~~--v~~~Da~~~l~~-~~~fD~V~lD 132 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG--VEKVTLNDINPDAVELIKKNLELN-GLENEK--VFNKDANALLHE-ERKFDVVDID 132 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHh-CCCceE--EEhhhHHHHHhh-cCCCCEEEEC
Confidence 5899999999999888765543 358999999999999999887532 222111 111222222211 3569999884
Q ss_pred ccccCCCCHHHHHHHHHH-HHh-ccCCeEEEE
Q 015771 112 YVLGEVPSLQDRITIVRQ-LWD-LTRDVLVLV 141 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~-Lw~-~~gG~LVlV 141 (400)
- . -. .. .++.. +.. +++|.|.+-
T Consensus 133 P-~-Gs--~~---~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 P-F-GS--PA---PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred C-C-CC--cH---HHHHHHHHHhcCCCEEEEE
Confidence 2 1 11 11 34444 222 267777766
No 207
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.91 E-value=0.09 Score=42.94 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=57.0
Q ss_pred EEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhh-hcccCC-CcccEEeec
Q 015771 34 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNK-DISKSE-REHDLVIAS 111 (400)
Q Consensus 34 VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~DLVias 111 (400)
+||+|||+|... .+....+ ....++++|.++.|+..++..... .....+... ..+... .++... ..||++ +.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG-RGAYVVGVDLSPEMLALARARAEG-AGLGLVDFV--VADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC-CCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEE--EeccccCCCCCCCCCceeEE-ee
Confidence 999999999875 2222222 114788899999999885554422 211101100 011111 123233 479999 55
Q ss_pred ccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ 147 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~ 147 (400)
...............+....+ ++|.+++.......
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~ 160 (257)
T COG0500 126 LLVLHLLPPAKALRELLRVLK-PGGRLVLSDLLRDG 160 (257)
T ss_pred eeehhcCCHHHHHHHHHHhcC-CCcEEEEEeccCCC
Confidence 544433322222333333332 68988888775444
No 208
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.89 E-value=0.016 Score=49.69 Aligned_cols=44 Identities=18% Similarity=0.139 Sum_probs=36.6
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+|||+|||.|..+..++...+. .+++++|+++.+.+.++..++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~--~~v~~~E~~~~~~~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE--GRVIAFEPLPDAYEILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC--CEEEEEecCHHHHHHHHHHHHH
Confidence 4899999999988877766642 4899999999999988887653
No 209
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.84 E-value=0.14 Score=49.47 Aligned_cols=124 Identities=19% Similarity=0.289 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHCCC----CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--C----CCc
Q 015771 15 TLLVTESFARRLPG----FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--D----LPL 84 (400)
Q Consensus 15 ~~~vL~el~~rlp~----~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~----~~~ 84 (400)
...++++|.+..|. -.+.+||==|||.|.++|.++. ....+.+.|.|-.|+=...-++.... + .|+
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~----~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf 112 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAK----LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPF 112 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhh----ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecc
Confidence 34467777777662 3457999999999999999884 35689999999999988888776311 1 144
Q ss_pred eeechhh---h---------H------------h---hhh---cccC---CCcccEEeecccccCCCCHHHHHHHHHHHH
Q 015771 85 IHSYNSI---Q---------A------------L---NKD---ISKS---EREHDLVIASYVLGEVPSLQDRITIVRQLW 131 (400)
Q Consensus 85 ~~~~~~~---~---------~------------l---~~~---l~~~---~~~~DLVias~~L~eL~~~~~r~~~i~~Lw 131 (400)
++...+. . | + ..+ +... .++||.|+..|.+...++.-+=++.|.+++
T Consensus 113 ~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 113 VHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLL 192 (270)
T ss_pred eecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHh
Confidence 3321110 0 0 0 000 0111 368999999988776655555566777777
Q ss_pred hccCCeEEEEcC
Q 015771 132 DLTRDVLVLVEP 143 (400)
Q Consensus 132 ~~~gG~LVlVE~ 143 (400)
+ |||+.|=+-|
T Consensus 193 k-pgG~WIN~GP 203 (270)
T PF07942_consen 193 K-PGGYWINFGP 203 (270)
T ss_pred c-cCCEEEecCC
Confidence 4 7997775544
No 210
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.80 E-value=0.013 Score=57.42 Aligned_cols=130 Identities=16% Similarity=0.128 Sum_probs=67.4
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCC-----CCCcEEEEEeCCHHHHHHHHHhh--cCCCCC-CceeechhhhHhhhhccc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWP-----RSLEKVNLVEPSQSMQRAGQSLM--QGPKDL-PLIHSYNSIQALNKDISK 100 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~-----~~~~~v~~vD~S~~ml~~a~~ll--~~~~~~-~~~~~~~~~~~l~~~l~~ 100 (400)
....+|||-.||+|.++.++.+.+. .....++++|.++.+..+|+..+ ...... ..+.... .+......
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d---~l~~~~~~ 121 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD---SLENDKFI 121 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES----TTTSHSCT
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc---cccccccc
Confidence 3446899999999999988776431 13468999999999999887543 221111 0011111 11111111
Q ss_pred CCCcccEEeecccccCC--C----------------CHHHHHHHHHHHHhc--cCCeEEEEcCCCCC-chHHHHHHHHHH
Q 015771 101 SEREHDLVIASYVLGEV--P----------------SLQDRITIVRQLWDL--TRDVLVLVEPGTPQ-GSSIISQMRSHI 159 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL--~----------------~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~-Gf~~I~~aR~~l 159 (400)
....||+|++.--+... . ....-..++...++. ++|.+++|-|..-. .-..-..+|+.|
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 24689999885322211 0 001112355555554 68988877663211 111125679998
Q ss_pred HH
Q 015771 160 LW 161 (400)
Q Consensus 160 L~ 161 (400)
|+
T Consensus 202 l~ 203 (311)
T PF02384_consen 202 LE 203 (311)
T ss_dssp HH
T ss_pred Hh
Confidence 85
No 211
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.038 Score=57.02 Aligned_cols=123 Identities=19% Similarity=0.150 Sum_probs=74.8
Q ss_pred HHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCc
Q 015771 7 LLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPL 84 (400)
Q Consensus 7 ~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~ 84 (400)
||=.|.+.....+..+.+-+..-...+|||+=||.|+.+++++ ....+|++||+++++++.|+..++..+ |..+
T Consensus 270 F~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA----~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f 345 (432)
T COG2265 270 FFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLA----KRVKKVHGVEISPEAVEAAQENAAANGIDNVEF 345 (432)
T ss_pred ceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhc----ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEE
Confidence 4445655555555666555554455799999999999999988 356799999999999999999887542 2211
Q ss_pred eeechhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 85 IHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
... ....+.... .....+|.|+.-=-=.-+. ..+++.+.+..--.+|-|
T Consensus 346 ~~~--~ae~~~~~~-~~~~~~d~VvvDPPR~G~~-----~~~lk~l~~~~p~~IvYV 394 (432)
T COG2265 346 IAG--DAEEFTPAW-WEGYKPDVVVVDPPRAGAD-----REVLKQLAKLKPKRIVYV 394 (432)
T ss_pred EeC--CHHHHhhhc-cccCCCCEEEECCCCCCCC-----HHHHHHHHhcCCCcEEEE
Confidence 111 011111111 1234678888643222221 246777776533444444
No 212
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.74 E-value=0.023 Score=57.08 Aligned_cols=68 Identities=18% Similarity=0.019 Sum_probs=49.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 6 MLLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 6 ~~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+||=.|-......+..+.+.++.- +..|||+=||.|+.++.++. ...+|++||.++++++.|+..++.
T Consensus 173 sFfQvN~~~~~~l~~~~~~~l~~~-~~~vlDlycG~G~fsl~la~----~~~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 173 SFFQVNPEQNEKLYEQALEWLDLS-KGDVLDLYCGVGTFSLPLAK----KAKKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp S---SBHHHHHHHHHHHHHHCTT--TTEEEEES-TTTCCHHHHHC----CSSEEEEEES-HHHHHHHHHHHHH
T ss_pred cCccCcHHHHHHHHHHHHHHhhcC-CCcEEEEeecCCHHHHHHHh----hCCeEEEeeCCHHHHHHHHHHHHH
Confidence 355556666666677776666543 34899999999999999983 557899999999999999988763
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.62 E-value=0.046 Score=52.56 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCcee
Q 015771 17 LVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIH 86 (400)
Q Consensus 17 ~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~ 86 (400)
.+.+.+.+.+..-....|||+|+|+|..+.++.+.. .++++||.++.+.+..+..+....++.+++
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~----~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG----KRVIAVEIDPDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS----SEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc----CcceeecCcHhHHHHHHHHhhhcccceeee
Confidence 344444444432245799999999999999988654 689999999999999888776444444443
No 214
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.60 E-value=0.025 Score=50.54 Aligned_cols=43 Identities=14% Similarity=0.151 Sum_probs=36.0
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
.|+|+.||.|..+++++..+ ..|++||.++..++.++..++-.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~----~~Viaidid~~~~~~a~hNa~vY 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF----DRVIAIDIDPERLECAKHNAEVY 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-----EEEEEES-HHHHHHHHHHHHHT
T ss_pred EEEEeccCcCHHHHHHHHhC----CeEEEEECCHHHHHHHHHHHHHc
Confidence 69999999999999999765 47999999999999999988654
No 215
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.54 E-value=0.19 Score=45.52 Aligned_cols=82 Identities=12% Similarity=0.063 Sum_probs=50.3
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCC-------cEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSL-------EKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~-------~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 104 (400)
..|||-=||+||.++.++..+.... .++++.|.++.+++.|+..++.......+... ..+.. .++...+.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~--~~D~~-~l~~~~~~ 106 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFI--QWDAR-ELPLPDGS 106 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEE--E--GG-GGGGTTSB
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEE--ecchh-hcccccCC
Confidence 5899999999999988766654322 14899999999999999998754322122110 01111 23334568
Q ss_pred ccEEeecccccC
Q 015771 105 HDLVIASYVLGE 116 (400)
Q Consensus 105 ~DLVias~~L~e 116 (400)
+|+||+.-=...
T Consensus 107 ~d~IvtnPPyG~ 118 (179)
T PF01170_consen 107 VDAIVTNPPYGR 118 (179)
T ss_dssp SCEEEEE--STT
T ss_pred CCEEEECcchhh
Confidence 999998755444
No 216
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.48 E-value=0.11 Score=48.56 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC--CCCCceeechhhhHhhhhcccCCCc-ccE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP--KDLPLIHSYNSIQALNKDISKSERE-HDL 107 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~--~~~~~~~~~~~~~~l~~~l~~~~~~-~DL 107 (400)
+.+++|+|+|.|--.+.++-.+|+ .+++.+|+...=...-+.+.... .|+..++.. .++ +. ...+ ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~--~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~R--aE~----~~-~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD--LKVTLLESLGKKIAFLREVKKELGLENVEIVHGR--AEE----FG-QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC--CcEEEEccCchHHHHHHHHHHHhCCCCeEEehhh--Hhh----cc-cccccCcE
Confidence 689999999999766665556664 34999999876555444444433 233333211 111 21 1123 999
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEE
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLV 139 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LV 139 (400)
|++--+ ..| ....++...+.+ .||.++
T Consensus 139 vtsRAv-a~L---~~l~e~~~pllk-~~g~~~ 165 (215)
T COG0357 139 VTSRAV-ASL---NVLLELCLPLLK-VGGGFL 165 (215)
T ss_pred EEeehc-cch---HHHHHHHHHhcc-cCCcch
Confidence 887543 333 234455666664 466654
No 217
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.47 E-value=0.073 Score=51.94 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CC---CceeechhhhHhhhhcccCCCcc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DL---PLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~---~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+.++|||+=|=||..+.+++. ....+|+.||.|..+++.|+..+.-.. +. .++... -...+.. +. ..++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~---gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~D-vf~~l~~-~~-~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA---GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGD-VFKFLKR-LK-KGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH---TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES--HHHHHHH-HH-HTT-E
T ss_pred CCCceEEecCCCCHHHHHHHH---CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecC-HHHHHHH-Hh-cCCCC
Confidence 347999999999988876552 245689999999999999999875321 11 122111 1111221 21 24589
Q ss_pred cEEee---cccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchH
Q 015771 106 DLVIA---SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 106 DLVia---s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~ 150 (400)
|+||+ ++.=+...-..+-..++..+.+. +||.|++.-....-+.+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 99998 33322111011223455555554 79999888776555544
No 218
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=95.46 E-value=0.057 Score=50.10 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=45.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
..|-|+|||-+..+-++. ...+|...|.-.. + +.+.. .++. .+|.+.+..|++|++
T Consensus 74 ~viaD~GCGdA~la~~~~-----~~~~V~SfDLva~-------------n-~~Vta----cdia-~vPL~~~svDv~Vfc 129 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVP-----NKHKVHSFDLVAP-------------N-PRVTA----CDIA-NVPLEDESVDVAVFC 129 (219)
T ss_dssp S-EEEES-TT-HHHHH-------S---EEEEESS-S-------------S-TTEEE----S-TT-S-S--TT-EEEEEEE
T ss_pred EEEEECCCchHHHHHhcc-----cCceEEEeeccCC-------------C-CCEEE----ecCc-cCcCCCCceeEEEEE
Confidence 589999999988774443 2346888885321 1 11221 1232 345567889999999
Q ss_pred ccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCC
Q 015771 112 YVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGT 145 (400)
Q Consensus 112 ~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gt 145 (400)
.+|+-.. . ..+|.+.++ ++||.|.|.|-.+
T Consensus 130 LSLMGTn-~---~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 130 LSLMGTN-W---PDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp S---SS--H---HHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred hhhhCCC-c---HHHHHHHHheeccCcEEEEEEecc
Confidence 9998763 3 345555555 3899999999854
No 219
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.36 E-value=0.18 Score=47.26 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcc-cCCCc
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDIS-KSERE 104 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~-~~~~~ 104 (400)
++|+++||+|.=||..+++.+...|+ ..+|+++|.+....+++..+.+...- +.+++. .....+.+-+. ...++
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~-dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g-~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPE-DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG-PALESLDELLADGESGT 149 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCC-CceEEEEecChHHHHHhHHHHHhccccceeeeeec-chhhhHHHHHhcCCCCc
Confidence 57899999998888888877777875 67999999999999999887764321 222222 11222332222 24678
Q ss_pred ccEEeecc
Q 015771 105 HDLVIASY 112 (400)
Q Consensus 105 ~DLVias~ 112 (400)
||.++.-.
T Consensus 150 fDfaFvDa 157 (237)
T KOG1663|consen 150 FDFAFVDA 157 (237)
T ss_pred eeEEEEcc
Confidence 99998643
No 220
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.30 E-value=0.32 Score=46.83 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=63.3
Q ss_pred CeEEEEccchhH--HHHHHH-HHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC--CCceeechhhhHhhhhcc--c----
Q 015771 32 AKVLDFGAGTGS--AFWALR-EVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD--LPLIHSYNSIQALNKDIS--K---- 100 (400)
Q Consensus 32 ~~VLDvG~G~Gt--~~~Al~-~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~--~~~~~~~~~~~~l~~~l~--~---- 100 (400)
...||+|||-=| .+-.++ ..-| ..+|+.||..+-.+..++.++....+ ..+++.. +.+...-+. .
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P--~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD--~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAP--DARVVYVDNDPVVLAHARALLADNPRGRTAYVQAD--LRDPEAILAHPEVRGL 145 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-T--T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE----TT-HHHHHCSHHHHCC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCC--CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCC--CCCHHHHhcCHHHHhc
Confidence 689999999432 233333 2333 47999999999999999999987544 2333322 111110010 0
Q ss_pred -CCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCCCch-HHHHHHHHH
Q 015771 101 -SEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS-SIISQMRSH 158 (400)
Q Consensus 101 -~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf-~~I~~aR~~ 158 (400)
...+.=.|++.-+|+++++.++-..++..+... +-|..+.|-+.|..+. +....++++
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~ 206 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAV 206 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHH
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHH
Confidence 111223567788899998877777889998876 4444444445454433 233444444
No 221
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.20 E-value=0.13 Score=49.06 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=64.4
Q ss_pred HHCCCCC--CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC---CCC---CceeechhhhH-h
Q 015771 24 RRLPGFS--PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP---KDL---PLIHSYNSIQA-L 94 (400)
Q Consensus 24 ~rlp~~~--p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~---~~~---~~~~~~~~~~~-l 94 (400)
..+.+|+ +.+||++|+|+|-....++-.+ ..+|+..|...-+..+...+-.+. ... -.+.... |.. +
T Consensus 78 ~~~~g~~~~~~~vlELGsGtglvG~~aa~~~---~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~-Wg~~~ 153 (248)
T KOG2793|consen 78 ATLIGFKTKYINVLELGSGTGLVGILAALLL---GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILV-WGNAL 153 (248)
T ss_pred hccccccccceeEEEecCCccHHHHHHHHHh---cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEe-cCCcc
Confidence 3566676 6789999999996655544433 357888887766554433322111 010 0111111 111 1
Q ss_pred hhhcccCCCc-ccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEE
Q 015771 95 NKDISKSERE-HDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 95 ~~~l~~~~~~-~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlV 141 (400)
.... .... +|+|+++-++.+....+....++..|... ++.+.++
T Consensus 154 ~~~~--~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~-~~~i~l~ 198 (248)
T KOG2793|consen 154 DVSF--RLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK-DGTIFLA 198 (248)
T ss_pred cHhh--ccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc-CCeEEEE
Confidence 1111 1223 99999999999888788888888888875 5544333
No 222
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.04 E-value=0.11 Score=52.77 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=65.7
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC-----ceeechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP-----LIHSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~ 104 (400)
++++|||+=|=||.++.+++. ....++|.||.|...++.|++.++=. ++. ++... -...+. .......+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~---gGA~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~D-vf~~l~-~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL---GGASEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGD-VFKWLR-KAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh---cCCCceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhh-HHHHHH-HHHhcCCc
Confidence 358999999999998877662 24459999999999999999988632 221 22111 011121 11223458
Q ss_pred ccEEee---cccccCCCCH---HHHHHHHHHHHh--ccCCeEEEEcCCCCCc
Q 015771 105 HDLVIA---SYVLGEVPSL---QDRITIVRQLWD--LTRDVLVLVEPGTPQG 148 (400)
Q Consensus 105 ~DLVia---s~~L~eL~~~---~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~G 148 (400)
|||||+ +|+=+.-... .+-..++....+ .+||.|++.-....-.
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 999997 2222111110 111123332222 2799999887755443
No 223
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.97 E-value=0.14 Score=48.02 Aligned_cols=103 Identities=15% Similarity=0.114 Sum_probs=58.8
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-CceeechhhhHhhhhcccCCCcccEEe
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..+||-+|+.+||.+--+++..+ ....|++||.|+.+.+-.-.+.+.-.|+ |.+.....-..+ ...-+..|+|.
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg-~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y----~~lv~~VDvI~ 148 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVG-PDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKY----RMLVEMVDVIF 148 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGG----TTTS--EEEEE
T ss_pred CCEEEEecccCCCccchhhhccC-CCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHh----hcccccccEEE
Confidence 36999999999999988888876 3568999999996554333444333453 443221100111 11234788887
Q ss_pred ecccccCCCCHHHHHHHHHHH--HhccCCeEEEEcC
Q 015771 110 ASYVLGEVPSLQDRITIVRQL--WDLTRDVLVLVEP 143 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~L--w~~~gG~LVlVE~ 143 (400)
+--. . +.+...++.|. .-++||.++|+=.
T Consensus 149 ~DVa---Q--p~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 149 QDVA---Q--PDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp EE-S---S--TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCC---C--hHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 6544 2 23333333333 3247898887743
No 224
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.97 E-value=0.074 Score=52.12 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHCCC-C---------CCCeEEEEccchhHHHHHHHHHC----CC--------------CCcEEEEE
Q 015771 11 CLLFTLLVTESFARRLPG-F---------SPAKVLDFGAGTGSAFWALREVW----PR--------------SLEKVNLV 62 (400)
Q Consensus 11 ~Ya~~~~vL~el~~rlp~-~---------~p~~VLDvG~G~Gt~~~Al~~~~----~~--------------~~~~v~~v 62 (400)
+|+.+..-|.++...+.. - +..+||-||.|.|+-+.|++.+| .. ....+++|
T Consensus 57 ~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlv 136 (315)
T PF11312_consen 57 AYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLV 136 (315)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEE
Confidence 577776666666554421 1 12699999999999888888888 11 11389999
Q ss_pred eCCH--HHHH-HHHHhhcC-----------CCCC--CceeechhhhHhh----hhcc-c-CCCcccEEeecccccCCCCH
Q 015771 63 EPSQ--SMQR-AGQSLMQG-----------PKDL--PLIHSYNSIQALN----KDIS-K-SEREHDLVIASYVLGEVPSL 120 (400)
Q Consensus 63 D~S~--~ml~-~a~~ll~~-----------~~~~--~~~~~~~~~~~l~----~~l~-~-~~~~~DLVias~~L~eL~~~ 120 (400)
|+.+ ..++ +...+-.. .... ..+...+...|+- ..+. . .....|||+.-|+||||-+.
T Consensus 137 DiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~ 216 (315)
T PF11312_consen 137 DIADWSSVVDRLTTTITSPPPLSKYASAANWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFST 216 (315)
T ss_pred EecChHHHHHHHHHhccCCCCccccccccccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 9764 2222 22222211 0000 0000001111110 0110 0 11257999999999999644
Q ss_pred H--HHHHHHHHHHhc--cCCeEEEEcCCCCCchHHH
Q 015771 121 Q--DRITIVRQLWDL--TRDVLVLVEPGTPQGSSII 152 (400)
Q Consensus 121 ~--~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I 152 (400)
. .-..++.+|-.. +|-.|+|||. |-.|..|
T Consensus 217 s~~kTt~FLl~Lt~~~~~GslLLVvDS--pGSYS~~ 250 (315)
T PF11312_consen 217 SISKTTKFLLRLTDICPPGSLLLVVDS--PGSYSEI 250 (315)
T ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEcC--CCCchhe
Confidence 3 223455555443 4556667764 4444433
No 225
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.75 E-value=0.072 Score=49.00 Aligned_cols=106 Identities=13% Similarity=0.128 Sum_probs=60.1
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc--CCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ--GPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
.+||+|||.|..+.+++...|+ ..+++||.+...+..+...+. ...|+-++..... ..+..-+ ..++.|-|..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~-~~l~~~~--~~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAR-ELLRRLF--PPGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CT-THHHHHS--TTTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHH-HHHhhcc--cCCchheEEE
Confidence 8999999999999999998875 689999999998876666554 3344444432211 1122111 3456777766
Q ss_pred cccccCCCCHH--HH---HHHHHHHHhc--cCCeEEEEcC
Q 015771 111 SYVLGEVPSLQ--DR---ITIVRQLWDL--TRDVLVLVEP 143 (400)
Q Consensus 111 s~~L~eL~~~~--~r---~~~i~~Lw~~--~gG~LVlVE~ 143 (400)
.|-==+..... .| ..++..+.+. +||.|-|.-.
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 55321111000 11 1344444432 7998887743
No 226
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=94.65 E-value=0.36 Score=44.09 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=40.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
+...++||+=+|+|+..+.+.. .....++.||.+.....+.++.++...
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlS---RGA~~~~~vE~~~~a~~~l~~N~~~l~ 90 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALS---RGAARVVFVEKDRKAVKILKENLKALG 90 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHh---CCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 5668999999999998776553 346789999999999999888887654
No 227
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.57 E-value=0.046 Score=49.75 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=34.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
..+.|+|+|+|.++..+++ ...+|++++.+|...+.|++.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~----~A~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 34 DTFADLGAGSGILSVVAAH----AAERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hceeeccCCcchHHHHHHh----hhceEEEEecCcHHHHHhhhcC
Confidence 5899999999998776664 3568999999999999888875
No 228
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.33 E-value=0.43 Score=45.05 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=63.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
..+||||||.|..+..++...|+ ..+++||+...-+..+...+.+.. |+-.+... ...+...+ .+.++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~--~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~D--A~~~l~~~-~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE--KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGD--AVEVLDYL-IPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC--CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCC--HHHHHHhc-CCCCCeeEEE
Confidence 47999999999999999999885 479999999988777766665431 33322211 11122222 2344778887
Q ss_pred ecccccCCCC--HH------HHHHHHHHHHhccCCeEEEEc
Q 015771 110 ASYVLGEVPS--LQ------DRITIVRQLWDLTRDVLVLVE 142 (400)
Q Consensus 110 as~~L~eL~~--~~------~r~~~i~~Lw~~~gG~LVlVE 142 (400)
..|-==+-.. .. ...+.+.+.++ +||.|-+.-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aT 164 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFAT 164 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEe
Confidence 7764222111 01 12233334442 799999873
No 229
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.33 E-value=0.28 Score=53.84 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=51.2
Q ss_pred CCC-C-CCeEEEEccchhHHHHHHHHH------------CC-----C-----------------------CCcEEEEEeC
Q 015771 27 PGF-S-PAKVLDFGAGTGSAFWALREV------------WP-----R-----------------------SLEKVNLVEP 64 (400)
Q Consensus 27 p~~-~-p~~VLDvG~G~Gt~~~Al~~~------------~~-----~-----------------------~~~~v~~vD~ 64 (400)
.+| + ...++|-+||+||.++.++.. |+ . ...+++++|.
T Consensus 185 a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Di 264 (702)
T PRK11783 185 SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDI 264 (702)
T ss_pred cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEEC
Confidence 345 3 468999999999998865442 11 0 1126999999
Q ss_pred CHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc--cCCCcccEEeecc
Q 015771 65 SQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDLVIASY 112 (400)
Q Consensus 65 S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~DLVias~ 112 (400)
++.|++.|+..+...+-...+.. ...++.. ++ ...+.||+||++-
T Consensus 265 d~~av~~A~~N~~~~g~~~~i~~--~~~D~~~-~~~~~~~~~~d~IvtNP 311 (702)
T PRK11783 265 DPRVIQAARKNARRAGVAELITF--EVKDVAD-LKNPLPKGPTGLVISNP 311 (702)
T ss_pred CHHHHHHHHHHHHHcCCCcceEE--EeCChhh-cccccccCCCCEEEECC
Confidence 99999999999875432111111 0112221 21 1234699999873
No 230
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=1.4 Score=42.02 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=75.0
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCC--CCcEEEEEeCCHHHHH-HHHHhhcCCCCCCceeechhhhHh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPR--SLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQAL 94 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~--~~~~v~~vD~S~~ml~-~a~~ll~~~~~~~~~~~~~~~~~l 94 (400)
.-.||..+.+ +.+++|+|+|.-+=+..+.+.+.. +...|+.+|.|...++ .++.++.....++..-. ..++
T Consensus 69 ~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l---~~~~ 142 (321)
T COG4301 69 RAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNAL---CGDY 142 (321)
T ss_pred HHHHHHHhhC---cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeeh---hhhH
Confidence 4457776644 579999999998776666655532 4578999999999886 67777776655443211 1222
Q ss_pred hhhcc--cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 95 NKDIS--KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 95 ~~~l~--~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
...+. ...+.-=++....+|..+. +.+...++.++-.. ||.+++|
T Consensus 143 ~~~La~~~~~~~Rl~~flGStlGN~t-p~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 143 ELALAELPRGGRRLFVFLGSTLGNLT-PGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred HHHHhcccCCCeEEEEEecccccCCC-hHHHHHHHHHHHhcCCCcceEEE
Confidence 22221 1112223456778899995 78888888888654 7776664
No 231
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.02 E-value=0.37 Score=48.03 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCc--eeechh
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPL--IHSYNS 90 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~--~~~~~~ 90 (400)
+.+.+++..+.+-.++ ..|||==||||+.++.+. . ....+++.|++..|++-|+..++...-..+ ...
T Consensus 183 P~lAR~mVNLa~v~~G---~~vlDPFcGTGgiLiEag-l---~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~--- 252 (347)
T COG1041 183 PRLARAMVNLARVKRG---ELVLDPFCGTGGILIEAG-L---MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKV--- 252 (347)
T ss_pred HHHHHHHHHHhccccC---CEeecCcCCccHHHHhhh-h---cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEe---
Confidence 3456677777654333 689999999999998765 3 346899999999999999999987641111 211
Q ss_pred hhHhhhhcccCCCcccEEeec--ccccC-CCC------HHHHHHHHHHHHhccCCeEEEEcC
Q 015771 91 IQALNKDISKSEREHDLVIAS--YVLGE-VPS------LQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 91 ~~~l~~~l~~~~~~~DLVias--~~L~e-L~~------~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
.+. ..++....++|-|++- |.-+. ... ..+..+.+..+++ +||++|+.-|
T Consensus 253 -~Da-~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p 311 (347)
T COG1041 253 -LDA-TNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP 311 (347)
T ss_pred -ccc-ccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence 011 1344444569998763 22221 110 1112233333332 5899999977
No 232
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.91 E-value=0.11 Score=49.53 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=57.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
|.+|||+|||.=-+++.....- ....|++.|++..+++.....+.-.+ .+. . ..+.++..+ .+....||.+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~--~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~-~--~~v~Dl~~~--~~~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA--PGATYIAYDIDSQLVEFLNAFLAVLG-VPH-D--ARVRDLLSD--PPKEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS--TT-EEEEEESBHHHHHHHHHHHHHTT--CE-E--EEEE-TTTS--HTTSEESEEEE
T ss_pred CchhhhhhccCCceehhhcccC--CCcEEEEEeCCHHHHHHHHHHHHhhC-CCc-c--eeEeeeecc--CCCCCcchhhH
Confidence 7899999999644433222211 24599999999999999888876442 111 1 111223222 24567899988
Q ss_pred cccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCCCch
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf 149 (400)
--+|.-|. .++....-+++.. ..-.+|+..|-.-.|-
T Consensus 178 lK~lp~le--~q~~g~g~~ll~~~~~~~~vVSfPtrSL~g 215 (251)
T PF07091_consen 178 LKTLPCLE--RQRRGAGLELLDALRSPHVVVSFPTRSLGG 215 (251)
T ss_dssp ET-HHHHH--HHSTTHHHHHHHHSCESEEEEEEES-----
T ss_pred HHHHHHHH--HHhcchHHHHHHHhCCCeEEEecccccccc
Confidence 88777663 1222222333333 3457777777544443
No 233
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=93.51 E-value=0.37 Score=48.83 Aligned_cols=100 Identities=10% Similarity=0.066 Sum_probs=59.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||+-||+|...+.++...+ ...+|+++|.|+...+..+..++... ...+... ..+....+.....+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~-ga~~Vv~nD~n~~Av~~i~~N~~~N~-~~~~~v~--~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE-GVREVFANDINPKAVESIKNNVEYNS-VENIEVP--NEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC-CCCEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEE--chhHHHHHHHhCCCCCEEEe
Confidence 45899999999998887665432 34689999999999999988875431 2111110 11222222212357999977
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVLV 141 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlV 141 (400)
-- .. .+ . .++....+. .+|.|.+-
T Consensus 121 DP-fG-s~--~---~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 DP-FG-TP--A---PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC-CC-Cc--H---HHHHHHHHhcccCCEEEEE
Confidence 43 22 22 1 233333332 46777766
No 234
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=93.13 E-value=0.52 Score=45.16 Aligned_cols=97 Identities=18% Similarity=0.269 Sum_probs=58.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
++..|+.| | ....|-|+|||-+-.+. . ...+|+..|.-+. +..++.+ ++. .
T Consensus 171 ii~~ik~r-~--~~~vIaD~GCGEakiA~--~-----~~~kV~SfDL~a~-------------~~~V~~c-----Dm~-~ 221 (325)
T KOG3045|consen 171 IIRKIKRR-P--KNIVIADFGCGEAKIAS--S-----ERHKVHSFDLVAV-------------NERVIAC-----DMR-N 221 (325)
T ss_pred HHHHHHhC-c--CceEEEecccchhhhhh--c-----cccceeeeeeecC-------------CCceeec-----ccc-C
Confidence 44455544 2 23689999999876542 1 2356888884211 1111211 233 2
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
+|..+++.|++|+..+|+--. ..+-..-...+++ +||.|-|.|-.+
T Consensus 222 vPl~d~svDvaV~CLSLMgtn-~~df~kEa~RiLk-~gG~l~IAEv~S 267 (325)
T KOG3045|consen 222 VPLEDESVDVAVFCLSLMGTN-LADFIKEANRILK-PGGLLYIAEVKS 267 (325)
T ss_pred CcCccCcccEEEeeHhhhccc-HHHHHHHHHHHhc-cCceEEEEehhh
Confidence 566778999999998887653 4444444555553 799999999754
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.08 E-value=1.6 Score=40.46 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=35.9
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
|.||.++..-|++ ..|+|+||-||.-+-.++...+ ....|+++|.-+
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~-~~~~ivavDi~p 80 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLG-AGGKIVAVDILP 80 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhC-CCCcEEEEECcc
Confidence 6677777655665 7999999999998887777665 234599999755
No 236
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.87 E-value=0.51 Score=47.23 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=43.1
Q ss_pred HHHCCCCCCCeEEEEccchhHHHHHHHH----HCCC--CCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 23 ARRLPGFSPAKVLDFGAGTGSAFWALRE----VWPR--SLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 23 ~~rlp~~~p~~VLDvG~G~Gt~~~Al~~----~~~~--~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
-.+++...|..|+++|+|.|+.+.-+.. ..|+ ...+|..||+|+++.++=+..+++..
T Consensus 70 wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 70 WQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 3445566778999999999998754332 2221 24689999999999998888887754
No 237
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.79 E-value=0.24 Score=49.68 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHHHHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 16 LLVTESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
-++|.|+...+.+|.| ..|.|+|+|.|..+..+.-- ....|.+||.|....+.|+++=
T Consensus 138 i~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~---y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 138 IRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG---YGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred HHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc---cCceEEEeccchHHHHHHHHHH
Confidence 3567888877777776 68999999999988766533 3468999999988777776653
No 238
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.53 E-value=0.9 Score=47.96 Aligned_cols=109 Identities=17% Similarity=0.129 Sum_probs=64.2
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC--CCCCCceeechhhhHhhhhcccCCCcc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG--PKDLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
+.....+||+|||.|..+..++...|+ ..+++||.+..-+..+...+.. ..|+-.+... ...+...+ ..++.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~--~~~~~~~~--~~~sv 418 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPD--ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNN--LDLILNDL--PNNSL 418 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHhc--Ccccc
Confidence 344568999999999999999988875 5799999999876655554432 2233222211 11122222 34567
Q ss_pred cEEeecccccCCCC--HHHHH---HHHHHHHhc--cCCeEEEEc
Q 015771 106 DLVIASYVLGEVPS--LQDRI---TIVRQLWDL--TRDVLVLVE 142 (400)
Q Consensus 106 DLVias~~L~eL~~--~~~r~---~~i~~Lw~~--~gG~LVlVE 142 (400)
|-|...|-==+-.. ...|+ .++..+.+. +||.+-+.-
T Consensus 419 ~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 419 DGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 88877664322211 11121 244444432 799888773
No 239
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.47 E-value=1.2 Score=44.97 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC--CceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL--PLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+|||+.++||.=+-.+++...+....|+++|.|+.-++..+..+++.+-. ..+.... ..+.. ......+||.|
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~--~~~~~-~~~~~~~fD~i 233 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA--RRLAE-LLPGGEKFDRI 233 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc--ccccc-cccccCcCcEE
Confidence 3799999999998777777777654556799999999988888888765422 1111110 00110 11122369999
Q ss_pred ee------cccccCCCC------HH-------HHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 109 IA------SYVLGEVPS------LQ-------DRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 109 ia------s~~L~eL~~------~~-------~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
++ +.++.-=|+ .. -..++|...|+. +||.||-.--.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 75 223321121 11 123466666654 79999987654
No 240
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.44 E-value=0.37 Score=45.89 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=38.0
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCC------CcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRS------LEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~------~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.|.+|+++|+|.|+++..+...+... ..+|+.||.|+.|.+.-++.+..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 35799999999999998877766532 25899999999999988888865
No 241
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.42 E-value=1.3 Score=38.55 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=59.0
Q ss_pred EEEEEeCCHHHHHHHHHhhcCCCC---CCceeechhhhHhhhhcccCCCcccEEeecccccCCCCHH--------HHHHH
Q 015771 58 KVNLVEPSQSMQRAGQSLMQGPKD---LPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPSLQ--------DRITI 126 (400)
Q Consensus 58 ~v~~vD~S~~ml~~a~~ll~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~--------~r~~~ 126 (400)
+|++.|+=+++++..++++++... +..+. .+...+...++ .++.|+||.+ |+.||..+ .-...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~--~sHe~l~~~i~--~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLIL--DSHENLDEYIP--EGPVDAAIFN--LGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEE--S-GGGGGGT----S--EEEEEEE--ESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEE--CCHHHHHhhCc--cCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHH
Confidence 589999999999999999976532 22222 12233443332 2478887754 57777532 34456
Q ss_pred HHHHHhc--cCCeEEEE-cCCCCCchHHHHHHHHHHH
Q 015771 127 VRQLWDL--TRDVLVLV-EPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 127 i~~Lw~~--~gG~LVlV-E~Gtp~Gf~~I~~aR~~lL 160 (400)
+++.++. +||.|+|| =+|++.|.+--....+++-
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~ 111 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLA 111 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6666664 78977765 7899999988877787763
No 242
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.38 E-value=1.8 Score=42.89 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=65.8
Q ss_pred CCCCC-CeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc--cCC
Q 015771 27 PGFSP-AKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSE 102 (400)
Q Consensus 27 p~~~p-~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~--~~~ 102 (400)
.++++ .+||=+|+|| |..+...++.++ ..+|+.+|.++.-++.|++ +......+.-+. .+.+.+.+.+. ...
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G--A~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~-~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG--ASDVVITDLVANRLELAKK-FGATVTDPSSHK-SSPQELAELVEKALGK 240 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcC--CCcEEEeecCHHHHHHHHH-hCCeEEeecccc-ccHHHHHHHHHhhccc
Confidence 34544 6999999998 666667777776 5789999999999999999 533211111111 11222221111 122
Q ss_pred CcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCC-chH
Q 015771 103 REHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQ-GSS 150 (400)
Q Consensus 103 ~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~-Gf~ 150 (400)
..+|..+-.--+.-- . ...|..+ +.+|.+|++.-|.+. -|-
T Consensus 241 ~~~d~~~dCsG~~~~----~-~aai~a~--r~gGt~vlvg~g~~~~~fp 282 (354)
T KOG0024|consen 241 KQPDVTFDCSGAEVT----I-RAAIKAT--RSGGTVVLVGMGAEEIQFP 282 (354)
T ss_pred cCCCeEEEccCchHH----H-HHHHHHh--ccCCEEEEeccCCCccccC
Confidence 347877755433211 1 1123222 369999999987643 454
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=91.00 E-value=1.2 Score=44.63 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=34.6
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHH
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQ 73 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~ 73 (400)
.+||=+|.|-|-++..+.. +| ...+++.||.+|.|++.++
T Consensus 291 ~~vLvlGGGDGLAlRellk-yP-~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 291 RSVLVLGGGDGLALRELLK-YP-QVEQITLVDLDPRMIELAS 330 (508)
T ss_pred ceEEEEcCCchHHHHHHHh-CC-CcceEEEEecCHHHHHHhh
Confidence 5899999999988877763 44 4789999999999999998
No 244
>PHA01634 hypothetical protein
Probab=90.74 E-value=0.53 Score=40.37 Aligned_cols=48 Identities=15% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+++.++|+|+|++-|..++.++- .....|+++|+++.+.++.+..++.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l---~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLL---RGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred eecCCEEEEecCCccchhhHHhh---cCccEEEEeccCHHHHHHHHHHhhh
Confidence 46779999999999976554331 2567999999999999998887654
No 245
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=90.56 E-value=0.21 Score=48.33 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=64.2
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
...+||+|||-|-.+ ... ...-+.+.|.+...+..++..=.. +.. ..+.. .+|.....||.+++
T Consensus 46 gsv~~d~gCGngky~----~~~--p~~~~ig~D~c~~l~~~ak~~~~~--~~~-------~ad~l-~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYL----GVN--PLCLIIGCDLCTGLLGGAKRSGGD--NVC-------RADAL-KLPFREESFDAALS 109 (293)
T ss_pred cceeeecccCCcccC----cCC--CcceeeecchhhhhccccccCCCc--eee-------hhhhh-cCCCCCCccccchh
Confidence 357999999987543 111 234678899998887776652111 111 11111 34556778999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
.-++++|.+...|..+++.+.+. +||..++
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 99999999888888999999875 7775443
No 246
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=90.28 E-value=0.52 Score=47.05 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=59.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEe
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVI 109 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVi 109 (400)
...++||+||+||..++.+.+ ...+|++||.++ | +..+... +.+...... .+. ..+ ..+.+|+|+
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~----rG~~V~AVD~g~-l---~~~L~~~-~~V~h~~~d----~fr-~~p-~~~~vDwvV 275 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVR----RGMFVTAVDNGP-M---AQSLMDT-GQVEHLRAD----GFK-FRP-PRKNVDWLV 275 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHH----cCCEEEEEechh-c---CHhhhCC-CCEEEEecc----Ccc-cCC-CCCCCCEEE
Confidence 447999999999999998885 345999999554 2 2333322 222211110 011 112 256799999
Q ss_pred ecccccCCCCHHHHHHHHHHHHhc--cCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 110 ASYVLGEVPSLQDRITIVRQLWDL--TRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 110 as~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
|--+-. +..-..++...+.. ....++-+----..-|+.+....+.|
T Consensus 276 cDmve~----P~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 276 CDMVEK----PARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred EecccC----HHHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 876521 33333444444332 12233333323344566666655554
No 247
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.90 E-value=0.6 Score=47.74 Aligned_cols=65 Identities=20% Similarity=0.105 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 12 LLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 12 Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
|+.+...+.|.++++.+ .-.-|||||.|||.++..+... ....++++|.=..|.+.|+++....+
T Consensus 49 ~~gi~~tIte~kh~~~~-gkv~vLdigtGTGLLSmMAvra---gaD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 49 RLGIEKTITEPKHVLDI-GKVFVLDIGTGTGLLSMMAVRA---GADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred HHHHHHHhcccceeccC-ceEEEEEccCCccHHHHHHHHh---cCCeEEeehhhchHHHHHHHHHhcCC
Confidence 45566677777777533 2247999999999887665543 34579999999999999999997643
No 248
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=89.62 E-value=0.44 Score=49.59 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=36.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
..+||+-||||+..++++. ....|++||.|+....-|+..+.
T Consensus 385 k~llDv~CGTG~iglala~----~~~~ViGvEi~~~aV~dA~~nA~ 426 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALAR----GVKRVIGVEISPDAVEDAEKNAQ 426 (534)
T ss_pred cEEEEEeecCCceehhhhc----cccceeeeecChhhcchhhhcch
Confidence 6899999999999999884 56789999999999998887664
No 249
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=89.46 E-value=0.69 Score=42.79 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=42.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
..+|||.-||-|..++.++..- ....|+++|.+|...+..++.++-..-...+... ..|.. .+. ....+|-|++
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~--~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~--~~D~~-~~~-~~~~~drvim 175 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG--KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVI--NGDAR-EFL-PEGKFDRVIM 175 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT---SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEE--ES-GG-G----TT-EEEEEE
T ss_pred ceEEEEccCCccHHHHHHhhhc--CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEE--cCCHH-Hhc-CccccCEEEE
Confidence 3699999999999888877542 3568999999999988887776532111111110 11222 121 1568898877
Q ss_pred cc
Q 015771 111 SY 112 (400)
Q Consensus 111 s~ 112 (400)
.+
T Consensus 176 ~l 177 (200)
T PF02475_consen 176 NL 177 (200)
T ss_dssp --
T ss_pred CC
Confidence 65
No 250
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.45 E-value=4.9 Score=40.24 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=36.8
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+.+|+=+|||| |.++.+++...+ ..+|+++|.++.-+++|++...
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~G--a~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLG--ASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CceEEEeCCCHHHHHHHHHhCC
Confidence 34899999998 666667777765 5789999999999999998554
No 251
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.37 E-value=7.1 Score=39.32 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=35.5
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
...+||.+|+|+ |..+..++...+ ..++++++.++++++.++.+.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g--~~~vi~~~~~~~~~~~~~~~~ 229 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG--AERVIAIDRVPERLEMARSHL 229 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHcC
Confidence 347899999987 777777777664 246999999999999988753
No 252
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=88.23 E-value=4.8 Score=37.39 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-CceeechhhhHhhhhcccCCCcccEE
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
...+||=+|+-+||.+--+++.-+ ...+++||.|+.+.+-.-.+++.-.|+ |.+.....-+.+. ..-+..|+|
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~--~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~----~~Ve~VDvi 149 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVG--EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYR----HLVEKVDVI 149 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccC--CCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhh----hhcccccEE
Confidence 457999999999999888888876 357999999998776555555444443 4432210000111 122457877
Q ss_pred eecccccCCCCHHHHHHHHHHH--HhccCCeEEEEc
Q 015771 109 IASYVLGEVPSLQDRITIVRQL--WDLTRDVLVLVE 142 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~L--w~~~gG~LVlVE 142 (400)
..-- ..+.+...++.|. .-+.+|+++|+=
T Consensus 150 y~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 150 YQDV-----AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEec-----CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 6543 2333433444442 223577666653
No 253
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=88.09 E-value=1.5 Score=40.72 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=59.1
Q ss_pred EEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeeccc
Q 015771 34 VLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASYV 113 (400)
Q Consensus 34 VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~ 113 (400)
|.|+||-.|-...++.+.- ...+++++|.++..++.|+..++.......+... +.+--..+. +.+..|.||.+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~--~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~r--lgdGL~~l~-~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG--KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVR--LGDGLEVLK-PGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTT--SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEE--E-SGGGG---GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEE--ECCcccccC-CCCCCCEEEEecC
Confidence 6899999999888777532 3468999999999999999988765422222221 111001121 2223677777665
Q ss_pred ccCCCCHHHHHHHHHHHHhc-c-CCeEEEEcCCCCCchHHHHHHHHHHH
Q 015771 114 LGEVPSLQDRITIVRQLWDL-T-RDVLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 114 L~eL~~~~~r~~~i~~Lw~~-~-gG~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
= ..-...++.+.... . ...||| -|-+ ....+|++|.
T Consensus 76 G-----G~lI~~ILe~~~~~~~~~~~lIL-qP~~-----~~~~LR~~L~ 113 (205)
T PF04816_consen 76 G-----GELIIEILEAGPEKLSSAKRLIL-QPNT-----HAYELRRWLY 113 (205)
T ss_dssp ------HHHHHHHHHHTGGGGTT--EEEE-EESS------HHHHHHHHH
T ss_pred C-----HHHHHHHHHhhHHHhccCCeEEE-eCCC-----ChHHHHHHHH
Confidence 2 22233444443322 2 234554 3322 2456788876
No 254
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.00 E-value=1.2 Score=45.08 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=53.4
Q ss_pred HCCCCCCC-eEEEEccchhHHHHHHHHHCCC---C----------------------------------CcEEEEEeCCH
Q 015771 25 RLPGFSPA-KVLDFGAGTGSAFWALREVWPR---S----------------------------------LEKVNLVEPSQ 66 (400)
Q Consensus 25 rlp~~~p~-~VLDvG~G~Gt~~~Al~~~~~~---~----------------------------------~~~v~~vD~S~ 66 (400)
++.+|++. .++|==||+||.++.++-.-.+ . ...++|+|+++
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 34567764 8999999999998765433210 0 01377999999
Q ss_pred HHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeecc
Q 015771 67 SMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIASY 112 (400)
Q Consensus 67 ~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~ 112 (400)
.|++.|+..+.+.+-...+... ..++. .+....+.+|+||++-
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~--~~d~~-~l~~~~~~~gvvI~NP 307 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFK--QADAT-DLKEPLEEYGVVISNP 307 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEE--Ecchh-hCCCCCCcCCEEEeCC
Confidence 9999999998875422222211 11222 2322226899999863
No 255
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=86.75 E-value=3 Score=40.58 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=41.3
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK 80 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~ 80 (400)
..+|||+.+|||.=+..+++.+. ....+++.|.+..-+...+..+++.+
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~-~~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMG-NKGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTT-TTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccccccccCCCCceeeeeeccc-chhHHHHhccCHHHHHHHHHHHHhcC
Confidence 36899999999988888888886 36799999999998888888777654
No 256
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=86.28 E-value=6 Score=39.04 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=46.1
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
|+|+-..+..-.+..++|.=+|-|.-+.++++..+ . .+++++|.++.++..++..+...
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~-g~vigiD~D~~Al~~ak~~L~~~ 67 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-T-GRLIGIDRDPQAIAFAKERLSDF 67 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-C-CEEEEEcCCHHHHHHHHHHHhhc
Confidence 45555544322346899999999998888888776 3 78999999999999999988654
No 257
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.02 E-value=1.6 Score=41.32 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=64.9
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceee--
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHS-- 87 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~-- 87 (400)
..+-.+..+|++..- +++...+||+|+.||.++--+.+ .....|++||.+-.-+.- ++ + +-+.+..
T Consensus 62 RG~~KL~~ale~F~l---~~k~kv~LDiGsSTGGFTd~lLq---~gAk~VyavDVG~~Ql~~--kL-R---~d~rV~~~E 129 (245)
T COG1189 62 RGGLKLEKALEEFEL---DVKGKVVLDIGSSTGGFTDVLLQ---RGAKHVYAVDVGYGQLHW--KL-R---NDPRVIVLE 129 (245)
T ss_pred cHHHHHHHHHHhcCc---CCCCCEEEEecCCCccHHHHHHH---cCCcEEEEEEccCCccCH--hH-h---cCCcEEEEe
Confidence 344555566666542 45668999999999999876664 346799999987643221 11 1 1111111
Q ss_pred chhhhHhhhhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 88 YNSIQALNKDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 88 ~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
..+...+... ...+..|++++--++-.|. ..+..+..+.+..+-.+.+|-|-.
T Consensus 130 ~tN~r~l~~~--~~~~~~d~~v~DvSFISL~---~iLp~l~~l~~~~~~~v~LvKPQF 182 (245)
T COG1189 130 RTNVRYLTPE--DFTEKPDLIVIDVSFISLK---LILPALLLLLKDGGDLVLLVKPQF 182 (245)
T ss_pred cCChhhCCHH--HcccCCCeEEEEeehhhHH---HHHHHHHHhcCCCceEEEEecchh
Confidence 1111112110 1123678999877655442 334445555543334566776643
No 258
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=84.63 E-value=0.63 Score=37.75 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=29.0
Q ss_pred EEEccchhHHHHHHHHHCCCCC-cEEEEEeCCHH---HHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 35 LDFGAGTGSAFWALREVWPRSL-EKVNLVEPSQS---MQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 35 LDvG~G~Gt~~~Al~~~~~~~~-~~v~~vD~S~~---ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
|++|+..|..+..+++.+++.. .+++++|..+. ..+..++.-- ..++..+... +...+. .++ ..++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-~~~~~~~~g~-s~~~l~-~~~--~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-SDRVEFIQGD-SPDFLP-SLP--DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG--BTEEEEES--THHHHH-HHH--H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-CCeEEEEEcC-cHHHHH-HcC--CCCEEEEEE
Confidence 6899888877666665554322 37999999994 3333332100 0122222221 111121 111 368999986
Q ss_pred cccccCCCCHHHHHHHHHHHHhc--cCCeEEE
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDL--TRDVLVL 140 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~--~gG~LVl 140 (400)
--. + +.+.....+..++.+ +||++|+
T Consensus 76 Dg~--H--~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 76 DGD--H--SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ES-------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCC--C--CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 431 1 134455667777765 6777665
No 259
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.77 E-value=4.6 Score=37.86 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=67.9
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcc--cCCCcccEEee
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDIS--KSEREHDLVIA 110 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~DLVia 110 (400)
+|.|+||-.|-+...+...- ....++++|.++..++.|...+...+..+.+... ..+.++ .....+|.|+.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~--~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr-----~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNN--PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVR-----LGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred ceeeccCchhHhHHHHHhcC--CcceEEEeecccCHHHHHHHHHHhcCCcceEEEe-----ccCCccccCccCCcCEEEE
Confidence 49999999998877766443 3568999999999999999999876555544432 111222 13346888877
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCC--eEEEEcCCCCCchHHHHHHHHHHH
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRD--VLVLVEPGTPQGSSIISQMRSHIL 160 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG--~LVlVE~Gtp~Gf~~I~~aR~~lL 160 (400)
+-+= ..--..++++.-++-.| .|||- |.+ . .-.+|+++.
T Consensus 92 AGMG-----G~lI~~ILee~~~~l~~~~rlILQ-Pn~---~--~~~LR~~L~ 132 (226)
T COG2384 92 AGMG-----GTLIREILEEGKEKLKGVERLILQ-PNI---H--TYELREWLS 132 (226)
T ss_pred eCCc-----HHHHHHHHHHhhhhhcCcceEEEC-CCC---C--HHHHHHHHH
Confidence 6642 22233455555444233 45543 322 1 346788875
No 260
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=83.53 E-value=3 Score=41.00 Aligned_cols=83 Identities=10% Similarity=0.138 Sum_probs=39.6
Q ss_pred CCeEEEEccchhHH--HHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-Cceeec--hhhhHhhhhcccCCCcc
Q 015771 31 PAKVLDFGAGTGSA--FWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-PLIHSY--NSIQALNKDISKSEREH 105 (400)
Q Consensus 31 p~~VLDvG~G~Gt~--~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~~~~~~--~~~~~l~~~l~~~~~~~ 105 (400)
..++||||+|.-.. ++.+ ..++ =++++.|+++..++.|+.+++...++ ..+... ..-..+-..+....+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~-~~~~---W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGA-KLYG---WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHH-HHH-----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhh-hhcC---CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhccccee
Confidence 35899999997532 2222 2222 37999999999999999998754222 122111 00011111222234589
Q ss_pred cEEeecccccCC
Q 015771 106 DLVIASYVLGEV 117 (400)
Q Consensus 106 DLVias~~L~eL 117 (400)
|+.+|.-=+++-
T Consensus 179 dftmCNPPFy~s 190 (299)
T PF05971_consen 179 DFTMCNPPFYSS 190 (299)
T ss_dssp EEEEE-----SS
T ss_pred eEEecCCccccC
Confidence 999997665553
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=83.29 E-value=8.1 Score=40.45 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=61.1
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
..|||..+|.|.++-|+.+ ...-|.-|-++... +...-++.+ +-+...| ++.+.++.-..+||||-+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~----~~VWVMNVVP~~~~-ntL~vIydR-GLIG~yh------DWCE~fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALID----DPVWVMNVVPVSGP-NTLPVIYDR-GLIGVYH------DWCEAFSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhcc----CCceEEEecccCCC-Ccchhhhhc-ccchhcc------chhhccCCCCcchhheehh
Confidence 6899999999999887763 22222222222110 000111111 1112122 2344444345799999999
Q ss_pred ccccCCCCHHH---HHHHHHHHHhccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 112 YVLGEVPSLQD---RITIVRQLWDLTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 112 ~~L~eL~~~~~---r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
++|+...+.-+ .+--++++++ |+|.+||=+ ....|..++..+
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD-----~~~vl~~v~~i~ 479 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD-----TVDVLEKVKKIA 479 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcC-CCceEEEec-----cHHHHHHHHHHH
Confidence 99987754322 2233445553 899988754 367788888754
No 262
>PRK10742 putative methyltransferase; Provisional
Probab=82.94 E-value=4.5 Score=38.70 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=34.4
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
+|||.=+|.|.-.+.++. ...+|++||.|+.+..+.+..++.
T Consensus 91 ~VLD~TAGlG~Da~~las----~G~~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLAS----VGCRVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHH----cCCEEEEEECCHHHHHHHHHHHHH
Confidence 899999999998887774 345699999999988777766654
No 263
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=81.81 E-value=7.9 Score=38.02 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-CCCceee
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-DLPLIHS 87 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-~~~~~~~ 87 (400)
.|+|+..-+..-.....+|.=-|-|.-+-++.+.++ ...+++++|.++.+++.|+.++.... .+.+++.
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~-~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~ 80 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLP-DLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHG 80 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCC-CCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeC
Confidence 456666655322236899998898888889888886 46789999999999999999987643 3444554
No 264
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.78 E-value=19 Score=38.12 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=35.2
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
.|.+||=+|+|+ |..+.+++..++ .+|+++|.+++-++.++.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHc
Confidence 478999999997 556666777775 3799999999999998884
No 265
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=78.13 E-value=4.7 Score=37.76 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHHHHHC----CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 17 LVTESFARRL----PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 17 ~vL~el~~rl----p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
++-+||.+|. +.-.|-++-|=.||.|-.+--+.-+.+..+..+++-|++++++++|++.+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 5667777664 344578999999999976544333344567899999999999999998774
No 266
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=78.01 E-value=3.4 Score=37.62 Aligned_cols=41 Identities=22% Similarity=0.107 Sum_probs=32.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHH
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 74 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ 74 (400)
....|||.=||+||.+.|+.. ...+++++|.+++..++|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~----l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEE----LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHH----TT-EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHH----cCCeEEEEeCCHHHHHHhcC
Confidence 347999999999999988774 34689999999999998864
No 267
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=77.44 E-value=4 Score=37.44 Aligned_cols=45 Identities=22% Similarity=0.084 Sum_probs=30.1
Q ss_pred HHHHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeC
Q 015771 19 TESFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP 64 (400)
Q Consensus 19 L~el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~ 64 (400)
|-||..+..-++| .+|||+||.||+-+--+.+.-. ....|.+||.
T Consensus 57 LiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~-p~g~v~gVDl 102 (232)
T KOG4589|consen 57 LIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVN-PNGMVLGVDL 102 (232)
T ss_pred heeehhhccccCCCCEEEEccCCCChHHHHHHHhhC-CCceEEEEee
Confidence 3345544444555 6999999999987765555442 3467888884
No 268
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=77.15 E-value=23 Score=34.48 Aligned_cols=101 Identities=15% Similarity=0.181 Sum_probs=63.5
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC---CCCceeechhhhHhhh-hcccCCCcccE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK---DLPLIHSYNSIQALNK-DISKSEREHDL 107 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~---~~~~~~~~~~~~~l~~-~l~~~~~~~DL 107 (400)
.+||+-|.|+|..+-|++.... ....++-.|.....-+.|.+-++... ++.+.+ .|+.. .+......+|.
T Consensus 107 svV~EsGTGSGSlShaiaraV~-ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~h-----rDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 107 SVVLESGTGSGSLSHAIARAVA-PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTH-----RDVCGSGFLIKSLKADA 180 (314)
T ss_pred CEEEecCCCcchHHHHHHHhhC-cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEE-----eecccCCccccccccce
Confidence 6999999999999999887775 45688889987766666655555432 122222 22322 11112345555
Q ss_pred EeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
| +..||.+.+..-.+.++++..||+|+-+-|
T Consensus 181 V-----FLDlPaPw~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 181 V-----FLDLPAPWEAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred E-----EEcCCChhhhhhhhHHHhhhcCceEEeccH
Confidence 5 445676766666666677656778886654
No 269
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=76.91 E-value=31 Score=34.96 Aligned_cols=130 Identities=21% Similarity=0.307 Sum_probs=64.8
Q ss_pred CCCeEEEEccchhHHHHHHHHH---CC--CCCcEEEEEeC----CHHHHH-HHHHhhcCC--CCCCceeec---hhhhHh
Q 015771 30 SPAKVLDFGAGTGSAFWALREV---WP--RSLEKVNLVEP----SQSMQR-AGQSLMQGP--KDLPLIHSY---NSIQAL 94 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~---~~--~~~~~v~~vD~----S~~ml~-~a~~ll~~~--~~~~~~~~~---~~~~~l 94 (400)
+-..|+|+|.|.|.---.+.+. .+ ....++|+|+. +..-++ .++.|.+-. -++|+.... ..+.++
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 4468999999998532122222 21 13469999999 555444 444443211 134432111 122222
Q ss_pred hh-hcccCCCcccEEeecccccCCCCHH-----HHHHHHHHHHhccCCeEEEEcCCC-CCchHHHHHHHHHH
Q 015771 95 NK-DISKSEREHDLVIASYVLGEVPSLQ-----DRITIVRQLWDLTRDVLVLVEPGT-PQGSSIISQMRSHI 159 (400)
Q Consensus 95 ~~-~l~~~~~~~DLVias~~L~eL~~~~-----~r~~~i~~Lw~~~gG~LVlVE~Gt-p~Gf~~I~~aR~~l 159 (400)
.. .+....+..=+|-+.+.|+.+.+.. .|..+++.+-+..-.++|++|... ..+...+.+.++.+
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal 261 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQEADHNSPSFLERFREAL 261 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence 11 1111122222334666778885221 355666666655335778887742 33444455555554
No 270
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=76.58 E-value=3 Score=38.72 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=34.9
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
..+.|||||-|.++..++..||+. -+.++|+-...-+..+..+.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdt--LiLGmEIR~KVsdYVk~RI~ 105 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDT--LILGMEIRDKVSDYVKERIQ 105 (249)
T ss_pred ceEEeeccCccchhhhccccCccc--eeeeehhhHHHHHHHHHHHH
Confidence 468999999999999999999863 47888887766666665554
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=74.17 E-value=13 Score=35.39 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=41.1
Q ss_pred CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhccc-CCCcc
Q 015771 27 PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISK-SEREH 105 (400)
Q Consensus 27 p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~ 105 (400)
.+...++||=+|=+-.+.+-.+... ...+|+++|++..+++.-+...+.. +++ +... ..++...+|. ..++|
T Consensus 41 gdL~gk~il~lGDDDLtSlA~al~~---~~~~I~VvDiDeRll~fI~~~a~~~-gl~-i~~~--~~DlR~~LP~~~~~~f 113 (243)
T PF01861_consen 41 GDLEGKRILFLGDDDLTSLALALTG---LPKRITVVDIDERLLDFINRVAEEE-GLP-IEAV--HYDLRDPLPEELRGKF 113 (243)
T ss_dssp T-STT-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHH-T---EEEE-----TTS---TTTSS-B
T ss_pred CcccCCEEEEEcCCcHHHHHHHhhC---CCCeEEEEEcCHHHHHHHHHHHHHc-CCc-eEEE--EecccccCCHHHhcCC
Confidence 5567799999998765544333222 2368999999999999887777543 233 2221 2345555553 36799
Q ss_pred cEEeec
Q 015771 106 DLVIAS 111 (400)
Q Consensus 106 DLVias 111 (400)
|+++.-
T Consensus 114 D~f~TD 119 (243)
T PF01861_consen 114 DVFFTD 119 (243)
T ss_dssp SEEEE-
T ss_pred CEEEeC
Confidence 999873
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=73.89 E-value=7.7 Score=37.61 Aligned_cols=46 Identities=20% Similarity=-0.003 Sum_probs=39.1
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
..+..|||.=+|+||.+.|+.. ...+++++|++++..++|+..+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~----lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKA----SGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHH----cCCCEEEEeCCHHHHHHHHHHHHh
Confidence 3457999999999999988774 356899999999999999998864
No 273
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=73.12 E-value=73 Score=30.50 Aligned_cols=125 Identities=11% Similarity=0.068 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCC-----CCCceeechh
Q 015771 16 LLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPK-----DLPLIHSYNS 90 (400)
Q Consensus 16 ~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~-----~~~~~~~~~~ 90 (400)
.+.+++...+...-.+..|+.+|||--|-.+.+. |+. ...++=||. +++++.-++++.+.. +...+.....
T Consensus 67 tr~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~--~~~-~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 67 TRFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLP--WPD-GTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCccccHHHhcC--CCC-CCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 3456655544322235689999999888877764 332 345666665 456666666665321 1112222211
Q ss_pred hhHhhhhcc---cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCC
Q 015771 91 IQALNKDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTP 146 (400)
Q Consensus 91 ~~~l~~~l~---~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp 146 (400)
.++...+. ......-++++--++..|+ .++-..+++.+.+. ..|..|+.|.-.+
T Consensus 143 -~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~-~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 143 -QDWPAALAAAGFDPTAPTAWLWEGLLMYLT-EEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred -hhHHHHHHhCCCCCCCCeeeeecchhhcCC-HHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 22222221 2233456888999999996 66677788888665 2466666665444
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=72.91 E-value=29 Score=34.75 Aligned_cols=92 Identities=18% Similarity=0.099 Sum_probs=55.6
Q ss_pred CCeEEEEccchhHHH--HHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 31 PAKVLDFGAGTGSAF--WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~--~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
..+|+=+|+| |.+. ..++..++ .+|+++|.|++=++.|+++-.+. .+... -.+.. ....+.+|+|
T Consensus 167 G~~V~I~G~G-GlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~lGAd~----~i~~~--~~~~~---~~~~~~~d~i 233 (339)
T COG1064 167 GKWVAVVGAG-GLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKLGADH----VINSS--DSDAL---EAVKEIADAI 233 (339)
T ss_pred CCEEEEECCc-HHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHhCCcE----EEEcC--Cchhh---HHhHhhCcEE
Confidence 3689999988 6554 44565554 69999999999999999875432 11100 00111 1112248999
Q ss_pred eecccccCCCCHHHHHHHHHHHHhccCCeEEEEcC
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~ 143 (400)
+..-. .. .-...++.|. .+|.+|+|--
T Consensus 234 i~tv~-~~-----~~~~~l~~l~--~~G~~v~vG~ 260 (339)
T COG1064 234 IDTVG-PA-----TLEPSLKALR--RGGTLVLVGL 260 (339)
T ss_pred EECCC-hh-----hHHHHHHHHh--cCCEEEEECC
Confidence 87765 22 1223444443 5999999843
No 275
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.62 E-value=12 Score=32.04 Aligned_cols=107 Identities=17% Similarity=0.288 Sum_probs=54.4
Q ss_pred HHCCCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHH-HHHHHhhcCCCCCCceeechhhhHhhhhcccC
Q 015771 24 RRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQ-RAGQSLMQGPKDLPLIHSYNSIQALNKDISKS 101 (400)
Q Consensus 24 ~rlp~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml-~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~ 101 (400)
+.+++++..+||=+|+|- |.++.+..... ...+++.+..+.+-. ++++.. .. .++..+. +.++.. .
T Consensus 5 ~~~~~l~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~-~~-~~~~~~~----~~~~~~----~ 72 (135)
T PF01488_consen 5 KKFGDLKGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF-GG-VNIEAIP----LEDLEE----A 72 (135)
T ss_dssp THHSTGTTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH-TG-CSEEEEE----GGGHCH----H
T ss_pred HhcCCcCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc-Cc-cccceee----HHHHHH----H
Confidence 344678889999999983 22332222222 456899999997633 344433 11 1111111 122221 1
Q ss_pred CCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeE-EEEcCCCCCch
Q 015771 102 EREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVL-VLVEPGTPQGS 149 (400)
Q Consensus 102 ~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~L-VlVE~Gtp~Gf 149 (400)
...+|+||.+-......- -...+....-.+ ++++-+.|+.-
T Consensus 73 ~~~~DivI~aT~~~~~~i-------~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 73 LQEADIVINATPSGMPII-------TEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp HHTESEEEE-SSTTSTSS-------THHHHTTTCHHCSEEEES-SS-SB
T ss_pred HhhCCeEEEecCCCCccc-------CHHHHHHHHhhhhceeccccCCCC
Confidence 246999998876654321 122333211115 77888877654
No 276
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=72.58 E-value=71 Score=31.34 Aligned_cols=111 Identities=17% Similarity=0.232 Sum_probs=61.3
Q ss_pred HHHHHHHHCCCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHH-HHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSM-QRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~m-l~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
++......++++...+|+=+|+|. |..+...... ....++++++.+++- .++++.+ .. ..+. ..++.
T Consensus 165 Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~--~g~~~V~v~~r~~~ra~~la~~~-g~----~~~~----~~~~~ 233 (311)
T cd05213 165 AVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAA--KGVAEITIANRTYERAEELAKEL-GG----NAVP----LDELL 233 (311)
T ss_pred HHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHH--cCCCEEEEEeCCHHHHHHHHHHc-CC----eEEe----HHHHH
Confidence 344455555556778999999985 3332222222 134689999999764 3455542 11 1111 11222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCCCch
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf 149 (400)
..+ ..+|+||.+-.-.+. ...+..+.+. .++-.++|+-+.|...
T Consensus 234 ~~l----~~aDvVi~at~~~~~------~~~~~~~~~~~~~~~~~viDlavPrdi 278 (311)
T cd05213 234 ELL----NEADVVISATGAPHY------AKIVERAMKKRSGKPRLIVDLAVPRDI 278 (311)
T ss_pred HHH----hcCCEEEECCCCCch------HHHHHHHHhhCCCCCeEEEEeCCCCCC
Confidence 212 357999987653332 2334444432 3466888898888765
No 277
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=72.47 E-value=11 Score=38.29 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=66.5
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLV 108 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLV 108 (400)
+.+..++|+|||-|-....+... ....+++++.++--...+........ +...+. ....++- ..++++..||.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f---~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~~k~~-~~~~~~~-~~~fedn~fd~v 182 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVF---KKAGVVGLDNNAYEAFRANELAKKAY-LDNKCN-FVVADFG-KMPFEDNTFDGV 182 (364)
T ss_pred cccccccccCcCcCchhHHHHHh---ccCCccCCCcCHHHHHHHHHHHHHHH-hhhhcc-eehhhhh-cCCCCccccCcE
Confidence 34457999999999888776643 24678999999876666555443211 000000 0011222 235678899999
Q ss_pred eecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEc
Q 015771 109 IASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVE 142 (400)
Q Consensus 109 ias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE 142 (400)
-+..+..+.++...+ ...+++ +|||..+.-|
T Consensus 183 ~~ld~~~~~~~~~~~---y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKV---YAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred EEEeecccCCcHHHH---HHHHhcccCCCceEEeHH
Confidence 999999999977654 444444 3888888553
No 278
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.33 E-value=2.4 Score=37.40 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=32.8
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
.+.+|+|+|-|..+.+++.. .....+++|.++=+..+++-.
T Consensus 74 GklvDlGSGDGRiVlaaar~---g~~~a~GvELNpwLVaysrl~ 114 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARC---GLRPAVGVELNPWLVAYSRLH 114 (199)
T ss_pred CcEEeccCCCceeehhhhhh---CCCcCCceeccHHHHHHHHHH
Confidence 68999999999999887753 245679999999887776543
No 279
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=70.94 E-value=11 Score=36.32 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCCC-CCeEEEEccchhHHHHHHHHHCCC---CCcEEEEEeCCHH
Q 015771 17 LVTESFARRLPGFS-PAKVLDFGAGTGSAFWALREVWPR---SLEKVNLVEPSQS 67 (400)
Q Consensus 17 ~vL~el~~rlp~~~-p~~VLDvG~G~Gt~~~Al~~~~~~---~~~~v~~vD~S~~ 67 (400)
+++..+.+. ..+. ...++|||||-|.++..+++.++. ....++.||....
T Consensus 5 Sli~~l~~~-~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 5 SLIGNLEQR-GLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHc-CCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 345555543 2333 358999999999999998888743 3568999998654
No 280
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=70.87 E-value=14 Score=35.76 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=45.6
Q ss_pred eEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccC-CCcccEEeec
Q 015771 33 KVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKS-EREHDLVIAS 111 (400)
Q Consensus 33 ~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~DLVias 111 (400)
+|+|+-||.|.+...+... ....+.++|.++...+..+...... .+. .++..-.... ...+|+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~---G~~~v~a~e~~~~a~~~~~~N~~~~----~~~-----~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA---GFEIVAANEIDKSAAETYEANFPNK----LIE-----GDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc---CCEEEEEEeCCHHHHHHHHHhCCCC----Ccc-----CccccCchhhcCCCCCEEEeC
Confidence 6999999999998877643 2457889999999998887766432 111 1121111111 3469999987
Q ss_pred cc
Q 015771 112 YV 113 (400)
Q Consensus 112 ~~ 113 (400)
.-
T Consensus 70 pP 71 (275)
T cd00315 70 FP 71 (275)
T ss_pred CC
Confidence 63
No 281
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=70.69 E-value=16 Score=36.54 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=62.0
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEee
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIA 110 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVia 110 (400)
+.+|||.=||-|-.++.++.. ...+|+++|++|...+..++.++-..-...+... .+|... +......+|-|++
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~---g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i--~gD~re-v~~~~~~aDrIim 262 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKK---GRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPI--LGDARE-VAPELGVADRIIM 262 (341)
T ss_pred CCEEEEccCCcccchhhhhhc---CCceEEEEecCHHHHHHHHHHHHhcCccceeeEE--eccHHH-hhhccccCCEEEe
Confidence 479999999999888877642 2234999999999999888877532111111110 112221 1112267999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCC
Q 015771 111 SYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGT 145 (400)
Q Consensus 111 s~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gt 145 (400)
.+.-.... -.-..+..++ .+|.+..-+...
T Consensus 263 ~~p~~a~~---fl~~A~~~~k--~~g~iHyy~~~~ 292 (341)
T COG2520 263 GLPKSAHE---FLPLALELLK--DGGIIHYYEFVP 292 (341)
T ss_pred CCCCcchh---hHHHHHHHhh--cCcEEEEEeccc
Confidence 88643211 1112333333 388888777654
No 282
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=70.17 E-value=47 Score=34.24 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=63.9
Q ss_pred HHHHHHHCCCCCCCeEEEEccc-hhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 19 TESFARRLPGFSPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G-~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
....++.+++++..+||=+|+| .|..+.. .+......+++.+-.+.+ .|+.+..... ..++ ...++...
T Consensus 166 v~lA~~~~~~L~~~~vlvIGAGem~~lva~--~L~~~g~~~i~IaNRT~e---rA~~La~~~~-~~~~----~l~el~~~ 235 (414)
T COG0373 166 VELAKRIFGSLKDKKVLVIGAGEMGELVAK--HLAEKGVKKITIANRTLE---RAEELAKKLG-AEAV----ALEELLEA 235 (414)
T ss_pred HHHHHHHhcccccCeEEEEcccHHHHHHHH--HHHhCCCCEEEEEcCCHH---HHHHHHHHhC-Ceee----cHHHHHHh
Confidence 3444555566788899999999 5554432 222234578888887765 3444443332 1111 11222222
Q ss_pred cccCCCcccEEeeccc-ccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCchH
Q 015771 98 ISKSEREHDLVIASYV-LGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 98 l~~~~~~~DLVias~~-L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf~ 150 (400)
-..+|+||++-. -+.+= ....+...++.... ++||+-+.|+..+
T Consensus 236 ----l~~~DvVissTsa~~~ii----~~~~ve~a~~~r~~-~livDiavPRdie 280 (414)
T COG0373 236 ----LAEADVVISSTSAPHPII----TREMVERALKIRKR-LLIVDIAVPRDVE 280 (414)
T ss_pred ----hhhCCEEEEecCCCcccc----CHHHHHHHHhcccC-eEEEEecCCCCCC
Confidence 246999998754 23322 23456666654334 9999988887653
No 283
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=69.80 E-value=24 Score=38.44 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=27.0
Q ss_pred CCeEEEEccchhHHHHHHHHHC-------CC---CCcEEEEEeCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVW-------PR---SLEKVNLVEPS 65 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~-------~~---~~~~v~~vD~S 65 (400)
.-+|||+|-|+|..++++.+.| +. ...+++.+|..
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~ 102 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKF 102 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECC
Confidence 3689999999999888888777 11 13578999963
No 284
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=69.70 E-value=11 Score=35.89 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=58.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC-----CCceeechhhhHhhhhc-ccCCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD-----LPLIHSYNSIQALNKDI-SKSER 103 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~-----~~~~~~~~~~~~l~~~l-~~~~~ 103 (400)
+..+|||...|-|-.++.+.+ .....|+.||-++..+++|+..- -..+ +..+. .+..+-+ ...+.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~---rGA~~VitvEkdp~VLeLa~lNP-wSr~l~~~~i~iil-----GD~~e~V~~~~D~ 204 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALE---RGAIHVITVEKDPNVLELAKLNP-WSRELFEIAIKIIL-----GDAYEVVKDFDDE 204 (287)
T ss_pred cCCEeeeeccCccHHHHHHHH---cCCcEEEEEeeCCCeEEeeccCC-CCccccccccEEec-----ccHHHHHhcCCcc
Confidence 347999999999977666553 23448999999999998875421 1011 11111 1111111 13567
Q ss_pred cccEEeecc---cc-cCCCCHHHHHHHHHHHHh--ccCCeEE--EEcCCC
Q 015771 104 EHDLVIASY---VL-GEVPSLQDRITIVRQLWD--LTRDVLV--LVEPGT 145 (400)
Q Consensus 104 ~~DLVias~---~L-~eL~~~~~r~~~i~~Lw~--~~gG~LV--lVE~Gt 145 (400)
+||.||--- ++ .+|- ..++-++|.+ ++||.|+ .-+||+
T Consensus 205 sfDaIiHDPPRfS~AgeLY----seefY~El~RiLkrgGrlFHYvG~Pg~ 250 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELY----SEEFYRELYRILKRGGRLFHYVGNPGK 250 (287)
T ss_pred ccceEeeCCCccchhhhHh----HHHHHHHHHHHcCcCCcEEEEeCCCCc
Confidence 899998532 22 2332 2344444444 2688877 336663
No 285
>KOG2730 consensus Methylase [General function prediction only]
Probab=67.94 E-value=8.6 Score=36.21 Aligned_cols=46 Identities=9% Similarity=-0.044 Sum_probs=35.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
++..|+|.=||.|..+...+... ..|++||+++.-+..|+..++-.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~----~~VisIdiDPikIa~AkhNaeiY 139 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG----PYVIAIDIDPVKIACARHNAEVY 139 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC----CeEEEEeccHHHHHHHhccceee
Confidence 66789998888777666655434 36899999999999999887644
No 286
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=67.54 E-value=13 Score=36.82 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=41.2
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
|.|+-+-+..-....++|.=.|.|.-+.++.+.++. .+++++|.++.+++.|++.+...
T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~--~~li~~DrD~~a~~~a~~~l~~~ 67 (310)
T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN--GRLIGIDRDPEALERAKERLKKF 67 (310)
T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT---EEEEEES-HHHHHHHHCCTCCC
T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC--CeEEEecCCHHHHHHHHHHHhhc
Confidence 344444443323468999988888888899988874 79999999999999999888754
No 287
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=67.18 E-value=97 Score=29.32 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=59.3
Q ss_pred CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC-CCCCceeechhhhHhhhhcccCCCcccE
Q 015771 29 FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP-KDLPLIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 29 ~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
-+..+||.+|.|-|.+.-.+.+.= ..+-+.+|..+..++..+.---.. .++..+. -.|++...++ +++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~---p~~H~IiE~hp~V~krmr~~gw~ek~nViil~--g~WeDvl~~L--~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAP---PDEHWIIEAHPDVLKRMRDWGWREKENVIILE--GRWEDVLNTL--PDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcC---CcceEEEecCHHHHHHHHhcccccccceEEEe--cchHhhhccc--cccCcce
Confidence 356899999999997765555432 245677999999887765533221 2332222 2345544444 3567998
Q ss_pred EeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEE
Q 015771 108 VIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLV 141 (400)
Q Consensus 108 Vias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlV 141 (400)
|.-- +..++ .++...+-+.+.+ +|+|++-..
T Consensus 173 I~yD-Ty~e~--yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 173 IYYD-TYSEL--YEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eEee-chhhH--HHHHHHHHHHHhhhcCCCceEEEe
Confidence 7642 22343 2333333333333 388888765
No 288
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=65.81 E-value=46 Score=33.07 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=69.9
Q ss_pred HHHHHHHHCCC----CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC---CCC---CCceee
Q 015771 18 VTESFARRLPG----FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG---PKD---LPLIHS 87 (400)
Q Consensus 18 vL~el~~rlp~----~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~---~~~---~~~~~~ 87 (400)
++.+|....|+ -...+||-=|||.|.++.-++.... ++.+=|.|--|+=...-++.. .+. .|++++
T Consensus 134 ii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~----~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 134 IIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF----KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred HHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc----cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 56666665553 1245799999999999988875543 455568888887766666621 111 244443
Q ss_pred chhhh------------H------------h--h-hhc------ccCCCcccEEeecccccCCCCHHHHHHHHHHHHhcc
Q 015771 88 YNSIQ------------A------------L--N-KDI------SKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLT 134 (400)
Q Consensus 88 ~~~~~------------~------------l--~-~~l------~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~ 134 (400)
+.+.. + + . .++ +...+.||.|+..|.+..-.+.-+-+..|.++++ +
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk-~ 288 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILK-P 288 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhcc-C
Confidence 21110 0 0 0 000 0112369999988776544333344455666664 8
Q ss_pred CCeEEEEcC
Q 015771 135 RDVLVLVEP 143 (400)
Q Consensus 135 gG~LVlVE~ 143 (400)
||+.|=+-|
T Consensus 289 GGvWiNlGP 297 (369)
T KOG2798|consen 289 GGVWINLGP 297 (369)
T ss_pred CcEEEeccc
Confidence 999986654
No 289
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=65.40 E-value=16 Score=30.48 Aligned_cols=45 Identities=13% Similarity=0.051 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHC-CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEe
Q 015771 15 TLLVTESFARRL-PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVE 63 (400)
Q Consensus 15 ~~~vL~el~~rl-p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD 63 (400)
+.+.|-+|=+.. ..-.+....|+|||-|.++.-++.. ...=.++|
T Consensus 42 IAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~E----Gy~G~GiD 87 (112)
T PF07757_consen 42 IAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSE----GYPGWGID 87 (112)
T ss_pred HHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhC----CCCccccc
Confidence 344444443332 2224568999999999998877742 23345666
No 290
>PRK13699 putative methylase; Provisional
Probab=64.97 E-value=11 Score=35.34 Aligned_cols=45 Identities=33% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.+..|||-=||+|+.+.|+.. ...+++++|++++..+.+.+.++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~----~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQ----SGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHH----cCCCEEEEecCHHHHHHHHHHHHH
Confidence 346899999999999998774 346899999999999999887754
No 291
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=63.51 E-value=79 Score=33.15 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=61.1
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcccEEeec
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHDLVIAS 111 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias 111 (400)
.++|-+|||--....-+. ......++.+|.|+-.++.....-. ...+..... ..+.. .+.++.++||+||.=
T Consensus 50 ~~~l~lGCGNS~l~e~ly---~~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~--~~d~~-~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLY---KNGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMV--EMDMD-QLVFEDESFDIVIDK 121 (482)
T ss_pred ceeEeecCCCCHHHHHHH---hcCCCCceeccccHHHHHHHHhccc--cCCcceEEE--Eecch-hccCCCcceeEEEec
Confidence 389999999765543333 2355789999999988776554332 122222111 11122 234577899999998
Q ss_pred ccccCCCCHHHHH----------HHHHHHHhccCCeEEEEcC
Q 015771 112 YVLGEVPSLQDRI----------TIVRQLWDLTRDVLVLVEP 143 (400)
Q Consensus 112 ~~L~eL~~~~~r~----------~~i~~Lw~~~gG~LVlVE~ 143 (400)
.+|..+-..+.+. .-+..+.+ ++|..+.|--
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl 162 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTL 162 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEe
Confidence 8888775433221 23334443 6887665544
No 292
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=62.82 E-value=21 Score=33.74 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=50.4
Q ss_pred HHHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcC
Q 015771 7 LLLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQG 78 (400)
Q Consensus 7 ~~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~ 78 (400)
.+.+||--=.++-+.|.+..+.....-|.++|.|||..+.++.+. ...+..+||.++.++.-.+.+.+.
T Consensus 27 ~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a---~~~RL~vVE~D~RFip~LQ~L~EA 95 (326)
T KOG0821|consen 27 QLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNA---DVARLLVVEKDTRFIPGLQMLSEA 95 (326)
T ss_pred HHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhc---chhheeeeeeccccChHHHHHhhc
Confidence 456666666667777777766666678999999999999887642 456788899888776665555543
No 293
>PLN00203 glutamyl-tRNA reductase
Probab=58.54 E-value=1.7e+02 Score=31.21 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=60.5
Q ss_pred HHHHHHHHCCC--CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhh
Q 015771 18 VTESFARRLPG--FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 18 vL~el~~rlp~--~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
++....+.+++ +...+|+=||+|.= +...+..+......++++++.+.+-.+.....+... ..... ...++.
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~----~~~dl~ 324 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYK----PLDEML 324 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEee----cHhhHH
Confidence 34444555554 77899999999842 222222222223457999999976554333322211 11110 111222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc---cCCeEEEEcCCCCCch
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL---TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~---~gG~LVlVE~Gtp~Gf 149 (400)
.. -..+|+||++-.-.+ +--..+.++.+... .+.-++||+-+.|+..
T Consensus 325 ~a----l~~aDVVIsAT~s~~---pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 325 AC----AAEADVVFTSTSSET---PLFLKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred HH----HhcCCEEEEccCCCC---CeeCHHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 11 236899987643211 11123455555421 1345899998888743
No 294
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=57.52 E-value=44 Score=32.38 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhH-HH-HHHHHHCCCCCcEEEEEeCCHH
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGS-AF-WALREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt-~~-~Al~~~~~~~~~~v~~vD~S~~ 67 (400)
.++..+.+.|.+.. ...+++.++||=+|+|-.+ ++ .++. . ....+++.++.+.+
T Consensus 105 TD~~G~~~~l~~~~-~~~~~~~k~vlvlGaGGaarai~~aL~-~--~G~~~i~I~nRt~~ 160 (282)
T TIGR01809 105 TDWDGIAGALANIG-KFEPLAGFRGLVIGAGGTSRAAVYALA-S--LGVTDITVINRNPD 160 (282)
T ss_pred CCHHHHHHHHHhhC-CccccCCceEEEEcCcHHHHHHHHHHH-H--cCCCeEEEEeCCHH
Confidence 34555555564311 0123566899999998332 22 2232 2 23568999999865
No 295
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=57.48 E-value=1.3e+02 Score=30.93 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=57.7
Q ss_pred HHHHHHCCCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHH-HHHHhhcCCCCCCceeechhhhHhhhh
Q 015771 20 ESFARRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQALNKD 97 (400)
Q Consensus 20 ~el~~rlp~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~-~a~~ll~~~~~~~~~~~~~~~~~l~~~ 97 (400)
....+.++.+...+|+=+|+|. |..+....... ...++++++.+.+... +++.+ .. ..+. ..++...
T Consensus 169 ~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~-g~----~~i~----~~~l~~~ 237 (417)
T TIGR01035 169 ELAERIFGSLKGKKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKEL-GG----EAVK----FEDLEEY 237 (417)
T ss_pred HHHHHHhCCccCCEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc-CC----eEee----HHHHHHH
Confidence 3334444556778999999985 32222222222 2468999999986533 44332 11 0111 1122221
Q ss_pred cccCCCcccEEeecccccCCCCHHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 98 ISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 98 l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
+ ..+|+||.+-.-.+ +--..+.+..+.....+.+++++-+.|...
T Consensus 238 l----~~aDvVi~aT~s~~---~ii~~e~l~~~~~~~~~~~~viDla~Prdi 282 (417)
T TIGR01035 238 L----AEADIVISSTGAPH---PIVSKEDVERALRERTRPLFIIDIAVPRDV 282 (417)
T ss_pred H----hhCCEEEECCCCCC---ceEcHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 2 35899998743211 111123444444322256788888877654
No 296
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=55.25 E-value=51 Score=32.14 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHH-HHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 11 CLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAF-WALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 11 ~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~-~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
++..+.+.|.+ ...+.+.+++|=+|+|-.+-+ .+.... ....+++.++.+++..+.++.+.+
T Consensus 107 D~~Gf~~~l~~---~~~~~~~k~vlvlGaGGaarAi~~~l~~--~g~~~i~i~nRt~~~~~ka~~la~ 169 (288)
T PRK12749 107 DGTGHIRAIKE---SGFDIKGKTMVLLGAGGASTAIGAQGAI--EGLKEIKLFNRRDEFFDKALAFAQ 169 (288)
T ss_pred CHHHHHHHHHh---cCCCcCCCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCCccHHHHHHHHHH
Confidence 34445555543 222455679999999833222 221222 245689999998654444555543
No 297
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=54.93 E-value=1.8e+02 Score=29.95 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=58.7
Q ss_pred HHHHHHHHCCCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHH-HHHHhhcCCCCCCceeechhhhHhh
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQR-AGQSLMQGPKDLPLIHSYNSIQALN 95 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~-~a~~ll~~~~~~~~~~~~~~~~~l~ 95 (400)
++......++++...+||=+|+|. |..+....... ...++++++.+++-.. +++.+ . . ..+. ..++.
T Consensus 169 Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~-g---~-~~~~----~~~~~ 237 (423)
T PRK00045 169 AVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEF-G---G-EAIP----LDELP 237 (423)
T ss_pred HHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHc-C---C-cEee----HHHHH
Confidence 333344444456778999999985 33333223222 3458999999986543 43332 1 1 1111 11222
Q ss_pred hhcccCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCCCCch
Q 015771 96 KDISKSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 96 ~~l~~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf 149 (400)
..+ ..+|+||.+-.-.+. --....+...... .++.+++|+-+.|+..
T Consensus 238 ~~l----~~aDvVI~aT~s~~~---~i~~~~l~~~~~~~~~~~~vviDla~Prdi 285 (423)
T PRK00045 238 EAL----AEADIVISSTGAPHP---IIGKGMVERALKARRHRPLLLVDLAVPRDI 285 (423)
T ss_pred HHh----ccCCEEEECCCCCCc---EEcHHHHHHHHhhccCCCeEEEEeCCCCCC
Confidence 222 358999987532221 0112234444432 2466888888777643
No 298
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=54.84 E-value=23 Score=30.25 Aligned_cols=39 Identities=23% Similarity=0.159 Sum_probs=22.6
Q ss_pred EEccchh--HHHHHHH-HHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 36 DFGAGTG--SAFWALR-EVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 36 DvG~G~G--t~~~Al~-~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
|+|+..| +.+..+. ... ....+++++|+++.+.+..+..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~-~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKC-GPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHT-S--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHc-CCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5444332 112 1346899999999988877666
No 299
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=53.42 E-value=18 Score=36.90 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.9
Q ss_pred cCCCcccEEeecccccCCCC
Q 015771 100 KSEREHDLVIASYVLGEVPS 119 (400)
Q Consensus 100 ~~~~~~DLVias~~L~eL~~ 119 (400)
++.++.+++.++++||+|+.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred cCCCceEEEEeeccceeccc
Confidence 35678999999999999963
No 300
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=53.23 E-value=26 Score=33.36 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=47.5
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCC----ceeechhhhHhhhhcccCCCcccE
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLP----LIHSYNSIQALNKDISKSEREHDL 107 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~DL 107 (400)
.++||||.|. .-+..+.-.- +..-+.++.|+++..+..|+.++....++. .+....+ ..+-..+-...+.||.
T Consensus 80 i~~LDIGvGA-nCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~-~~if~giig~nE~yd~ 156 (292)
T COG3129 80 IRILDIGVGA-NCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDS-DAIFNGIIGKNERYDA 156 (292)
T ss_pred eEEEeeccCc-ccccccccce-eecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCc-cccccccccccceeee
Confidence 5899999884 2222222110 122468899999999999999887643321 1111000 0011111123568999
Q ss_pred EeecccccCC
Q 015771 108 VIASYVLGEV 117 (400)
Q Consensus 108 Vias~~L~eL 117 (400)
++|+--+++-
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9998877763
No 301
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=53.07 E-value=48 Score=32.69 Aligned_cols=125 Identities=17% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC---CCce--eechhhhHhhhhcccCCCc
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD---LPLI--HSYNSIQALNKDISKSERE 104 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~---~~~~--~~~~~~~~l~~~l~~~~~~ 104 (400)
+|+.||=+|.|-|......... .+...+..+|+....++..++-+..... -+.+ +.-. -..+-+.. ..++
T Consensus 121 npkkvlVVgggDggvlrevikH--~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGD-G~~fl~~~--~~~~ 195 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH--KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGD-GFLFLEDL--KENP 195 (337)
T ss_pred CCCeEEEEecCCccceeeeecc--ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEecc-HHHHHHHh--ccCC
Confidence 6799999999998876543322 3678899999999999998887765321 1111 1100 00111111 2578
Q ss_pred ccEEeecccccCCCCHHHH-HHHHHHHHh--ccCCeEEEEcCCCCCchHHHHHHHHHH
Q 015771 105 HDLVIASYVLGEVPSLQDR-ITIVRQLWD--LTRDVLVLVEPGTPQGSSIISQMRSHI 159 (400)
Q Consensus 105 ~DLVias~~L~eL~~~~~r-~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf~~I~~aR~~l 159 (400)
||+||.--.=-..|...-- ..+...+.+ +++|++++++-.-+---..|.+.|.+-
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~ 253 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFC 253 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHhH
Confidence 9999876543333321111 122333332 379999999876666666777777763
No 302
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.04 E-value=1.6e+02 Score=27.28 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=47.1
Q ss_pred CCCCCeEEEEccc-hhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCccc
Q 015771 28 GFSPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREHD 106 (400)
Q Consensus 28 ~~~p~~VLDvG~G-~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~D 106 (400)
.+.+.+||=+|+= +|..+-.+. . ...+|+++|+.+.|. .++.+ ++.+ ...+-...+.+|
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~L---s-~~~~vtv~Di~p~~r----~~lp~--~v~F----------r~~~~~~~G~~D 101 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQML---S-KADKVTVVDIHPFMR----GFLPN--NVKF----------RNLLKFIRGEVD 101 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHh---c-ccceEEEecCCHHHH----hcCCC--CccH----------hhhcCCCCCcee
Confidence 4567899999974 566554333 2 357999999999984 33432 2221 112223567899
Q ss_pred EEeecccccCCC
Q 015771 107 LVIASYVLGEVP 118 (400)
Q Consensus 107 LVias~~L~eL~ 118 (400)
|||---.|.-+.
T Consensus 102 livDlTGlGG~~ 113 (254)
T COG4017 102 LIVDLTGLGGIE 113 (254)
T ss_pred EEEeccccCCCC
Confidence 999998888875
No 303
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=51.53 E-value=15 Score=35.74 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHH
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQ 69 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml 69 (400)
.|..++|||+|||+|.-.+.+.. .....+...|.|...+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~---~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFV---KGAVSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhh---hccceeeeEecchhhe
Confidence 47789999999999865443331 1225677777776655
No 304
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=51.23 E-value=61 Score=29.71 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
++..|.+.+..+.++... ....+||.+|+|+ |..+..++...+ .++++++.++...+.++.+
T Consensus 115 ~~~~~~~a~~~l~~~~~~---~~~~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 115 LPEPLATAYHALRRAGVL---KPGDTVLVLGAGGVGLLAAQLAKAAG---ARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred hcCHHHHHHHHHHhccCC---CCCCEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHh
Confidence 334555655565554431 2347999999986 444444554443 6899999998887776554
No 305
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=50.76 E-value=57 Score=33.62 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=57.1
Q ss_pred HHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhc
Q 015771 19 TESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDI 98 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l 98 (400)
+....+.++++...+||=+|+|- .+..++..+......+++.+..+.+ .++.+.........+ .+.++..
T Consensus 169 v~la~~~~~~l~~kkvlviGaG~-~a~~va~~L~~~g~~~I~V~nRt~~---ra~~La~~~~~~~~~----~~~~l~~-- 238 (414)
T PRK13940 169 ITLAKRQLDNISSKNVLIIGAGQ-TGELLFRHVTALAPKQIMLANRTIE---KAQKITSAFRNASAH----YLSELPQ-- 238 (414)
T ss_pred HHHHHHHhcCccCCEEEEEcCcH-HHHHHHHHHHHcCCCEEEEECCCHH---HHHHHHHHhcCCeEe----cHHHHHH--
Confidence 44445555678889999999983 3332222222223468999999864 344444332111111 1122221
Q ss_pred ccCCCcccEEeecccccC-CCCHHHHHHHHHHHHhccCCeEEEEcCCCCCch
Q 015771 99 SKSEREHDLVIASYVLGE-VPSLQDRITIVRQLWDLTRDVLVLVEPGTPQGS 149 (400)
Q Consensus 99 ~~~~~~~DLVias~~L~e-L~~~~~r~~~i~~Lw~~~gG~LVlVE~Gtp~Gf 149 (400)
.-..+|+||++-.-.+ +=+.+ ..+ +.-++||+-+.|+..
T Consensus 239 --~l~~aDiVI~aT~a~~~vi~~~--------~~~--~~~~~~iDLavPRdi 278 (414)
T PRK13940 239 --LIKKADIIIAAVNVLEYIVTCK--------YVG--DKPRVFIDISIPQAL 278 (414)
T ss_pred --HhccCCEEEECcCCCCeeECHH--------HhC--CCCeEEEEeCCCCCC
Confidence 1246899997654322 21111 111 334788888877655
No 306
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=48.66 E-value=45 Score=34.37 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=47.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHCC-CCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHH
Q 015771 5 LMLLLECLLFTLLVTESFARRLP-GFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 74 (400)
Q Consensus 5 ~~~~~~~Ya~~~~vL~el~~rlp-~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ 74 (400)
.+.|...|.+-.++++.+.+... .....+|+=+|+|+ |..+..++..++ .+|+++|.++.-+..|+.
T Consensus 175 K~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~G---a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 175 KSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQG---ARVIVTEVDPICALQAAM 243 (413)
T ss_pred cccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECChhhHHHHHh
Confidence 34555667777777887776643 24568999999997 555555555554 379999999887666654
No 307
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=48.31 E-value=42 Score=32.17 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=29.1
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHH
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ 67 (400)
.+||=+|++.|+.+--+.++.++ ..-|++||.|.-
T Consensus 158 sKVLYLGAasGttVSHvSDiVGp-eG~VYAVEfs~r 192 (317)
T KOG1596|consen 158 SKVLYLGAASGTTVSHVSDIVGP-EGCVYAVEFSHR 192 (317)
T ss_pred ceEEEeeccCCceeehhhcccCC-CceEEEEEeccc
Confidence 68999999999998888887763 457899998864
No 308
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=46.68 E-value=86 Score=29.34 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=34.6
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhh
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll 76 (400)
.|.++|=||-|..+.+|+.. +...+-+.+|-++..+...+...
T Consensus 39 aPCN~LVFGLghdsllW~aL----N~gGrTvFLEEd~~~i~~~~~~~ 81 (225)
T TIGR01627 39 SPCNILVFGLAHQYLMWSSL----NHRGRTVFIEEEKIMIAKAEVNP 81 (225)
T ss_pred CCceEEEeccCcchHHHHHh----cCCCeeEEecCCHHHHHHHhhcC
Confidence 56899999999999999876 34556788999998887766543
No 309
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=46.55 E-value=40 Score=31.32 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchh-HHHHH--HHHHCCCCCcEEEEEeCCHH
Q 015771 8 LLECLLFTLLVTESFARRLPGFSPAKVLDFGAGTG-SAFWA--LREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 8 ~~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~G-t~~~A--l~~~~~~~~~~v~~vD~S~~ 67 (400)
.|.+..++..+|-+++ |..|+++|.=-| +++|. +.+.++ ...+|++||+...
T Consensus 17 ~P~Dm~~~qeli~~~k-------Pd~IIE~Gi~~GGSli~~A~ml~~~~-~~~~VigiDIdir 71 (206)
T PF04989_consen 17 YPQDMVAYQELIWELK-------PDLIIETGIAHGGSLIFWASMLELLG-GKGKVIGIDIDIR 71 (206)
T ss_dssp -HHHHHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-GT
T ss_pred CHHHHHHHHHHHHHhC-------CCeEEEEecCCCchHHHHHHHHHHhC-CCceEEEEeCCcc
Confidence 3555666666666654 679999997654 44443 344553 4579999998543
No 310
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=45.46 E-value=2.4e+02 Score=25.70 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=21.1
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCC
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPS 65 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S 65 (400)
...+||=+|||. |..+...... ....+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCC
Confidence 347999999993 3332222222 245689999876
No 311
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=44.67 E-value=24 Score=35.23 Aligned_cols=100 Identities=15% Similarity=0.013 Sum_probs=43.2
Q ss_pred HHHHHHHHCCCCCCCeEEEEccchhHHHHHHH--------HHCCCC------CcEEEEEeC-CHHHHHHHHHhhcCC---
Q 015771 18 VTESFARRLPGFSPAKVLDFGAGTGSAFWALR--------EVWPRS------LEKVNLVEP-SQSMQRAGQSLMQGP--- 79 (400)
Q Consensus 18 vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~--------~~~~~~------~~~v~~vD~-S~~ml~~a~~ll~~~--- 79 (400)
.+.++......-++.+|+|+||..|..++.+. +.+... ...|+.-|. +.....+.+.+-...
T Consensus 4 ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~ 83 (334)
T PF03492_consen 4 AIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSL 83 (334)
T ss_dssp HHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHH
T ss_pred HHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhcc
Confidence 34455433344556799999999997665322 112111 135566663 333433333332210
Q ss_pred -CCCCceeechhhhHhhhhcccCCCcccEEeecccccCCCC
Q 015771 80 -KDLPLIHSYNSIQALNKDISKSEREHDLVIASYVLGEVPS 119 (400)
Q Consensus 80 -~~~~~~~~~~~~~~l~~~l~~~~~~~DLVias~~L~eL~~ 119 (400)
...++......--.+.+- .+.++.|+++++++||+|+.
T Consensus 84 ~~~~~~f~~gvpgSFy~rL--fP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 84 KKFRNYFVSGVPGSFYGRL--FPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp HHTTSEEEEEEES-TTS----S-TT-EEEEEEES-TTB-SS
T ss_pred CCCceEEEEecCchhhhcc--CCCCceEEEEEechhhhccc
Confidence 001111000000011111 35678999999999999863
No 312
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=44.43 E-value=1.1e+02 Score=29.89 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=31.7
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
...+||=+|+|+ |.++.+++...+ ..+++++|.+++-+++++++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G--~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG--AAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEEeCCHHHHHHHHHc
Confidence 357899899873 444555565543 34789999999998888774
No 313
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=43.36 E-value=2.7e+02 Score=25.68 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=20.7
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCC
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPS 65 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S 65 (400)
..+|+=+|||. |+.+...... ....+++.+|.+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 37899999983 4433322222 245688888876
No 314
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=43.00 E-value=54 Score=31.38 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=27.6
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
..+|+=+|.| |.+.|++..+......+++.||...
T Consensus 30 ~~~V~VvGiG-GVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIG-GVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hCcEEEEecC-chhHHHHHHHHHcCCCeEEEEeccc
Confidence 3689999999 8889987766555678899998653
No 315
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=42.59 E-value=1.1e+02 Score=29.06 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=30.4
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
...+||=+|+|+ |..+..++...+ ...++++|.++.-+++++.+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G--~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAG--AARVVAADPSPDRRELALSF 164 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHc
Confidence 346899999874 444444555553 34588899999888887764
No 316
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=42.14 E-value=49 Score=32.19 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCC--CcEEEEEeCCHHH
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRS--LEKVNLVEPSQSM 68 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~--~~~v~~vD~S~~m 68 (400)
...|+=+|+|||+-+--+.+.|+.. ..+.+.+|+.+.-
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~~h~ 100 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGRKHD 100 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCCccc
Confidence 4599999999999998888888742 3689999988753
No 317
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.05 E-value=1.2e+02 Score=29.75 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHC-CCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC-C----ce
Q 015771 12 LLFTLLVTESFARRL-PGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL-P----LI 85 (400)
Q Consensus 12 Ya~~~~vL~el~~rl-p~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~-~----~~ 85 (400)
+++=.+.+++..+.. ..- -..|+-+|||--|-.+.+. |+. ...|+=||. |++++.=++++.+.... | .+
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~--~~~-~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~V 148 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLD--WPK-GTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLV 148 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecC--CCC-CCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEE
Confidence 444445566554332 221 4689999999766554433 442 356777776 67777766777665422 2 11
Q ss_pred eechhhhHhhhhcc---cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCC
Q 015771 86 HSYNSIQALNKDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPG 144 (400)
Q Consensus 86 ~~~~~~~~l~~~l~---~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~G 144 (400)
.......++...+. .....--++|+--+|..|+ +++..+++.++... +.|..|+.+-+
T Consensus 149 a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~-~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 149 AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLP-EEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred eccccccchHHHHHhcCCCcCCCeEEEeccccccCC-HHHHHHHHHHHHHhCCCCceEEEecc
Confidence 11110012222221 1234556899999999997 77777888888876 57888877765
No 318
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=40.57 E-value=37 Score=36.70 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=33.3
Q ss_pred HHHHHCCCCCC-CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 21 SFARRLPGFSP-AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 21 el~~rlp~~~p-~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
+|.++..-..+ ..|||+||-||.-+-.+.+.+| ...-|++||+-+
T Consensus 34 Qln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~p-v~slivGvDl~p 79 (780)
T KOG1098|consen 34 QLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMP-VGSLIVGVDLVP 79 (780)
T ss_pred HHHHHhccccccchheeeccCCcHHHHHHHHhCC-CCceEEEeeeee
Confidence 44444433333 5799999999998888888887 567899999754
No 319
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=39.73 E-value=48 Score=32.66 Aligned_cols=48 Identities=13% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCC
Q 015771 31 PAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDL 82 (400)
Q Consensus 31 p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~ 82 (400)
..+|.-+|+| |-.+++.... ...+|.+||.+++-+.+-+-.+.....+
T Consensus 64 ghrivtigSG-Gcn~L~ylsr---~Pa~id~VDlN~ahiAln~lklaA~R~L 111 (414)
T COG5379 64 GHRIVTIGSG-GCNMLAYLSR---APARIDVVDLNPAHIALNRLKLAAFRHL 111 (414)
T ss_pred CcEEEEecCC-cchHHHHhhc---CCceeEEEeCCHHHHHHHHHHHHHHhhc
Confidence 3589999999 6666665543 3468999999999877666555543333
No 320
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.36 E-value=4.2e+02 Score=26.45 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=64.6
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCC------------CC----ceee-c-----h
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKD------------LP----LIHS-Y-----N 89 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~------------~~----~~~~-~-----~ 89 (400)
..|+.+|||.-+..|.+.+.+.....+++=||-++-..... .+...... .. .++. . .
T Consensus 89 ~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi-~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~ 167 (335)
T KOG2918|consen 89 KQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI-SIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGC 167 (335)
T ss_pred eEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH-hhcccCchhhhhhccccccccccCcceeccCceeeecc
Confidence 68999999999999998876532345677777776654443 11111100 00 0000 0 0
Q ss_pred hhhH---hhhhcc---cCCCcccEEeecccccCCCCHHHHHHHHHHHHhc-cCCeEEEEcCCC
Q 015771 90 SIQA---LNKDIS---KSEREHDLVIASYVLGEVPSLQDRITIVRQLWDL-TRDVLVLVEPGT 145 (400)
Q Consensus 90 ~~~~---l~~~l~---~~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~~-~gG~LVlVE~Gt 145 (400)
.+.+ +...+. ....-..|+|+--+|-.++ +++-..+++.+.++ +.+.+|.-|+=.
T Consensus 168 DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~-pe~S~~Li~w~~~~F~~a~fv~YEQi~ 229 (335)
T KOG2918|consen 168 DLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYME-PEESANLIKWAASKFENAHFVNYEQIN 229 (335)
T ss_pred chhhhHHHHHHHHhccCCcCcceeehhhhhheecc-HHHHHHHHHHHHHhCCcccEEEEeccC
Confidence 0011 111110 0122345677777888885 66667788888876 788999888844
No 321
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=36.81 E-value=2.2e+02 Score=25.27 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeC
Q 015771 9 LECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEP 64 (400)
Q Consensus 9 ~~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~ 64 (400)
..-..+-+.+|+.+.....+. +.-|||+|=|-|...=-+.+.+|+ .+|++.|.
T Consensus 8 i~RmtaQR~~L~~a~~~v~~~-~G~VlElGLGNGRTydHLRe~~p~--R~I~vfDR 60 (160)
T PF12692_consen 8 IRRMTAQRDCLNWAAAQVAGL-PGPVLELGLGNGRTYDHLREIFPD--RRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHHHHHHHHHTTT---S-EEEE--TTSHHHHHHHHH--S--S-EEEEES
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCceEEeccCCCccHHHHHHhCCC--CeEEEEee
Confidence 344455566788777776653 357999999999998888999984 58999995
No 322
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=36.34 E-value=1.3e+02 Score=28.73 Aligned_cols=41 Identities=17% Similarity=0.147 Sum_probs=29.6
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHH
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQS 74 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ 74 (400)
..+||..|+|. |.++..++...+ .++++++.|+...+.++.
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC---CEEEEEcCCHHHHHHHHH
Confidence 36888888763 566666665543 469999999998887755
No 323
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=35.49 E-value=2e+02 Score=22.54 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHH-HHHHHCCCCCcEEEEEe
Q 015771 10 ECLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFW-ALREVWPRSLEKVNLVE 63 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~-Al~~~~~~~~~~v~~vD 63 (400)
.|...+.+-+..++..-+--.|++||=+||-+|-++- .+...|+ ...+.++|-
T Consensus 18 GC~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg-~gA~TiGV~ 71 (78)
T PF12242_consen 18 GCARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFG-AGADTIGVS 71 (78)
T ss_dssp HHHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHC-C--EEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhc-CCCCEEEEe
Confidence 3444455555555554333357899999999986653 2444454 344555553
No 324
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.29 E-value=3.7e+02 Score=26.55 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=32.7
Q ss_pred CCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 28 GFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 28 ~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+.+...||==|+|.|.+=.-+.+.- ....++.++|.+..-.....+.++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa-~rg~~~vl~Din~~~~~etv~~~~ 83 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFA-KRGAKLVLWDINKQGNEETVKEIR 83 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHH-HhCCeEEEEeccccchHHHHHHHH
Confidence 5667899999999887643333332 345689999998876554444444
No 325
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=33.74 E-value=2.2e+02 Score=30.25 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=42.3
Q ss_pred HhHHHHHHHHHHHHHHCCC-------CCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 10 ECLLFTLLVTESFARRLPG-------FSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 10 ~~Ya~~~~vL~el~~rlp~-------~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..|.++......+-+.++. ..+.+||=+|+|+ |..+..++..++ ..++++|.+++-++.++.+
T Consensus 136 AGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lG---A~V~v~d~~~~rle~a~~l 206 (511)
T TIGR00561 136 AGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLG---AIVRAFDTRPEVKEQVQSM 206 (511)
T ss_pred HHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHc
Confidence 3455555555555554432 3568999999996 455555555554 3699999999988888763
No 326
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=32.85 E-value=1.7e+02 Score=28.98 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=31.2
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+||=+|+|+ |.++.+++..++ ..+++++|.+++-++.++++
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G--~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAK--ASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHh
Confidence 46899999874 445555666554 24799999999988888664
No 327
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=32.78 E-value=61 Score=31.73 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=27.4
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCC--cEEEEEeCCHH
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSL--EKVNLVEPSQS 67 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~--~~v~~vD~S~~ 67 (400)
++..|+=+|++||+-+--+.+.|+... .+.+++|+.+.
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f 97 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPF 97 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS--
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcch
Confidence 346899999999999988888887433 57999998875
No 328
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=32.73 E-value=25 Score=35.55 Aligned_cols=13 Identities=15% Similarity=0.475 Sum_probs=12.0
Q ss_pred ccCCceEEeeccC
Q 015771 350 RRGRQVAMDVCRS 362 (400)
Q Consensus 350 kr~gHV~ld~Ct~ 362 (400)
.++||.+||||.+
T Consensus 153 v~p~~~VLDmCAA 165 (375)
T KOG2198|consen 153 VKPGDKVLDMCAA 165 (375)
T ss_pred cCCCCeeeeeccC
Confidence 5889999999998
No 329
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.50 E-value=2.3e+02 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=16.6
Q ss_pred CeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCC
Q 015771 32 AKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPS 65 (400)
Q Consensus 32 ~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S 65 (400)
..||=+|+|. |--++-=.... +..++.+||.+
T Consensus 41 ~kiLviGAGGLGCElLKnLal~--gF~~~~viDmD 73 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALS--GFRQLHVIDMD 73 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhh--ccceeEEEeec
Confidence 5799999983 32222111111 34466666654
No 330
>PRK06153 hypothetical protein; Provisional
Probab=32.43 E-value=48 Score=33.90 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=25.7
Q ss_pred HHHHHHHCCCCCCCeEEEEccc-hhHHHHHHHHHCCCCCcEEEEEeCC
Q 015771 19 TESFARRLPGFSPAKVLDFGAG-TGSAFWALREVWPRSLEKVNLVEPS 65 (400)
Q Consensus 19 L~el~~rlp~~~p~~VLDvG~G-~Gt~~~Al~~~~~~~~~~v~~vD~S 65 (400)
+.++.+++. ..+|+=+||| +|+.+....... ...+++.+|..
T Consensus 167 i~~~q~kL~---~~~VaIVG~GG~GS~Va~~LAR~--GVgeI~LVD~D 209 (393)
T PRK06153 167 IGALSAKLE---GQRIAIIGLGGTGSYILDLVAKT--PVREIHLFDGD 209 (393)
T ss_pred hHHHHHHHh---hCcEEEEcCCccHHHHHHHHHHc--CCCEEEEECCC
Confidence 334444433 3799999997 444443333333 46789999965
No 331
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=32.15 E-value=80 Score=33.25 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=36.7
Q ss_pred CeEEEEccchhHHHHHHHHHCCCC--CcEEEEEeCCHHHHHHHHHhh
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRS--LEKVNLVEPSQSMQRAGQSLM 76 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~--~~~v~~vD~S~~ml~~a~~ll 76 (400)
.+|.|--||+|.....+.+..... ...+++.|.++.+..+|+..+
T Consensus 188 ~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~ 234 (489)
T COG0286 188 NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNL 234 (489)
T ss_pred CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHH
Confidence 489999999999988877766432 257999999999999887765
No 332
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=31.52 E-value=1.8e+02 Score=28.64 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=58.5
Q ss_pred HHhHHHHHHHHHHHHHHCCC---------------------------CCCCeEEEEccchhHHHHHHHHHCCCCCcEEEE
Q 015771 9 LECLLFTLLVTESFARRLPG---------------------------FSPAKVLDFGAGTGSAFWALREVWPRSLEKVNL 61 (400)
Q Consensus 9 ~~~Ya~~~~vL~el~~rlp~---------------------------~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~ 61 (400)
+.+|..+.+-+.|++++.|. ..++.|+=+|----+.+-++..- ...++.+
T Consensus 104 l~~f~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGDDDLtsia~aLt~---mpk~iaV 180 (354)
T COG1568 104 LQAFKDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGDDDLTSIALALTG---MPKRIAV 180 (354)
T ss_pred chhHHHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEcCchhhHHHHHhcC---CCceEEE
Confidence 35578888888888887652 23466888885443433333322 3468999
Q ss_pred EeCCHHHHHHHHHhhcCCC--CCCceeechhhhHhhhhccc-CCCcccEEee
Q 015771 62 VEPSQSMQRAGQSLMQGPK--DLPLIHSYNSIQALNKDISK-SEREHDLVIA 110 (400)
Q Consensus 62 vD~S~~ml~~a~~ll~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~DLVia 110 (400)
||+...+++.-.+.++..+ |+..+. -++.+.+|. ...+||+++.
T Consensus 181 vDIDERli~fi~k~aee~g~~~ie~~~-----~Dlr~plpe~~~~kFDvfiT 227 (354)
T COG1568 181 VDIDERLIKFIEKVAEELGYNNIEAFV-----FDLRNPLPEDLKRKFDVFIT 227 (354)
T ss_pred EechHHHHHHHHHHHHHhCccchhhee-----ehhcccChHHHHhhCCeeec
Confidence 9999999998888776542 332221 134444431 2468998764
No 333
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=31.44 E-value=1.8e+02 Score=28.17 Aligned_cols=53 Identities=21% Similarity=0.212 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEEccchhH-HH-HHHHHHCCCCCcEEEEEeCCHHHH
Q 015771 11 CLLFTLLVTESFARRLPGFSPAKVLDFGAGTGS-AF-WALREVWPRSLEKVNLVEPSQSMQ 69 (400)
Q Consensus 11 ~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt-~~-~Al~~~~~~~~~~v~~vD~S~~ml 69 (400)
++..+.+.|.+ ...+.+.++||=+|||-.+ ++ +++. .. ...+++.+|.+.+-.
T Consensus 110 D~~G~~~~l~~---~~~~~~~k~vlIlGaGGaaraia~aL~-~~--G~~~I~I~nR~~~ka 164 (284)
T PRK12549 110 DWSGFAESFRR---GLPDASLERVVQLGAGGAGAAVAHALL-TL--GVERLTIFDVDPARA 164 (284)
T ss_pred CHHHHHHHHHh---hccCccCCEEEEECCcHHHHHHHHHHH-Hc--CCCEEEEECCCHHHH
Confidence 44455555542 2334566899999998422 22 2232 22 356899999997543
No 334
>PLN02740 Alcohol dehydrogenase-like
Probab=31.04 E-value=1.2e+02 Score=30.26 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=31.1
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+||=+|+|+ |.++..++..++ ..+|+++|.+++-++.++++
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G--~~~Vi~~~~~~~r~~~a~~~ 242 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARG--ASKIIGVDINPEKFEKGKEM 242 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCcEEEEcCChHHHHHHHHc
Confidence 46899999874 444555665554 34699999999988888764
No 335
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=30.52 E-value=2.4e+02 Score=27.63 Aligned_cols=42 Identities=14% Similarity=0.126 Sum_probs=31.6
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+||=+|+|+ |.++..++..++ .++++++.+++-++.++.+
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMG---AAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHh
Confidence 47999999975 555556666654 3689999999988888663
No 336
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=30.06 E-value=4.3e+02 Score=24.10 Aligned_cols=33 Identities=27% Similarity=0.160 Sum_probs=20.5
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCC
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPS 65 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S 65 (400)
..+|+=+|||. |..+....... ...+++.+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARA--GIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 37899999983 33322212122 35689999987
No 337
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=30.05 E-value=18 Score=30.11 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=23.4
Q ss_pred cccEEeecccccCCC---CHHHHHHHHHHHHhc--cCCeEEEEcCC
Q 015771 104 EHDLVIASYVLGEVP---SLQDRITIVRQLWDL--TRDVLVLVEPG 144 (400)
Q Consensus 104 ~~DLVias~~L~eL~---~~~~r~~~i~~Lw~~--~gG~LVlVE~G 144 (400)
+||+|+|-.+-.++- ..+....+++.++.. |||.|| +||-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCC
Confidence 489998877654441 133456677777765 677776 5654
No 338
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=29.77 E-value=2.4e+02 Score=27.58 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=28.5
Q ss_pred CCeEEEEccch-hHHHHHHHHH-CCCCCcEEEEEeCCHHHHHHHHH
Q 015771 31 PAKVLDFGAGT-GSAFWALREV-WPRSLEKVNLVEPSQSMQRAGQS 74 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~-~~~~~~~v~~vD~S~~ml~~a~~ 74 (400)
..+||=+|+|+ |..+..++.. ++ ..+++++|.+++-++.++.
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g--~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYP--ESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcC--CCcEEEEeCcHhHHHHHhh
Confidence 47999999974 3333344432 33 3479999999988777764
No 339
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=27.93 E-value=2e+02 Score=29.57 Aligned_cols=62 Identities=13% Similarity=-0.044 Sum_probs=43.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHCC-CCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHH
Q 015771 4 LLMLLLECLLFTLLVTESFARRLP-GFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSM 68 (400)
Q Consensus 4 l~~~~~~~Ya~~~~vL~el~~rlp-~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~m 68 (400)
+.+.|...|.+-.++++.+.+... ....++|+=+|+|+ |..+...+..++ .+|+++|.++.-
T Consensus 167 ~K~~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~G---a~ViV~d~dp~r 230 (406)
T TIGR00936 167 TKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMG---ARVIVTEVDPIR 230 (406)
T ss_pred hchhhhcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCc---CEEEEEeCChhh
Confidence 345666677777777777665422 35668999999996 666555555554 479999988854
No 340
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=27.19 E-value=1.6e+02 Score=28.97 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=31.1
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+||=+|+|+ |.++.+++..++ ..+++++|.++.-++.++.+
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G--~~~Vi~~~~~~~~~~~~~~~ 220 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAG--ASKIIAVDIDDRKLEWAREF 220 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHc
Confidence 47899999864 455555666554 34699999999988888664
No 341
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.89 E-value=1.6e+02 Score=29.85 Aligned_cols=46 Identities=24% Similarity=0.089 Sum_probs=37.0
Q ss_pred CCeEEEEccchhH-HHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCC
Q 015771 31 PAKVLDFGAGTGS-AFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGP 79 (400)
Q Consensus 31 p~~VLDvG~G~Gt-~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~ 79 (400)
+.+|||.=||+|. ++..+.+.+. .++++-|+|+...++.+..+...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~---~~v~lNDisp~Avelik~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV---VKVVLNDISPKAVELIKENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc---cEEEEccCCHHHHHHHHHHHHhc
Confidence 6899999999995 5555666553 28999999999999999888643
No 342
>PLN02827 Alcohol dehydrogenase-like
Probab=26.86 E-value=2.1e+02 Score=28.63 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=30.7
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
...+||=+|+|+ |.++..++...+ ...+++++.+++-++.++.+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G--~~~vi~~~~~~~~~~~a~~l 237 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRG--ASQIIGVDINPEKAEKAKTF 237 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEECCCHHHHHHHHHc
Confidence 347999999874 444455555553 34688999999888887664
No 343
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=26.38 E-value=1.6e+02 Score=29.44 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=29.3
Q ss_pred CCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 30 SPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
+..-|+=+||| |.++|+++-+......++..||..+
T Consensus 73 ~~syVVVVG~G-gVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 73 TNSYVVVVGAG-GVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred cCcEEEEEecC-chhHHHHHHHHHhcCceEEEechhh
Confidence 34679999999 8999998877766678899999765
No 344
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.95 E-value=1.4e+02 Score=26.91 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhc-cCCeEEEEcCCCCCchH
Q 015771 122 DRITIVRQLWDL-TRDVLVLVEPGTPQGSS 150 (400)
Q Consensus 122 ~r~~~i~~Lw~~-~gG~LVlVE~Gtp~Gf~ 150 (400)
.....++.+... ..|.+|++|...|.|..
T Consensus 98 ~v~~a~~~i~~~l~~~~lvV~~STvppGtt 127 (185)
T PF03721_consen 98 YVESAIESIAPVLRPGDLVVIESTVPPGTT 127 (185)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESSSSSTTHH
T ss_pred HHHHHHHHHHHHHhhcceEEEccEEEEeee
Confidence 344555555543 46999999999999994
No 345
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=25.70 E-value=3.5e+02 Score=26.10 Aligned_cols=43 Identities=30% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+||=+|+|+ |.++..++..++ ..++++++.+++-++.++.+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~~ 207 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKAL 207 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHHh
Confidence 47888888863 344444555554 23499999999888887664
No 346
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=25.47 E-value=3.2e+02 Score=27.39 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhcCCCCCCceeechhhhHhhhhcccCCCcc
Q 015771 27 PGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQGPKDLPLIHSYNSIQALNKDISKSEREH 105 (400)
Q Consensus 27 p~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 105 (400)
|+-.|.+|.=+|.|. |+..--++-- ...+|+.+|.|..-++....++... +..+. .+..++.. .-.++
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~g---lgA~Vtild~n~~rl~~ldd~f~~r--v~~~~--st~~~iee----~v~~a 232 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIG---LGADVTILDLNIDRLRQLDDLFGGR--VHTLY--STPSNIEE----AVKKA 232 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhc---cCCeeEEEecCHHHHhhhhHhhCce--eEEEE--cCHHHHHH----Hhhhc
Confidence 345677888899885 4443222221 4579999999998887777766431 11111 11122332 23578
Q ss_pred cEEeecccccCCCCHH-HHHHHHHHHHhccCCeEEEE
Q 015771 106 DLVIASYVLGEVPSLQ-DRITIVRQLWDLTRDVLVLV 141 (400)
Q Consensus 106 DLVias~~L~eL~~~~-~r~~~i~~Lw~~~gG~LVlV 141 (400)
|+||.+-.+---..+. -..+.+++| ++|.+||=|
T Consensus 233 DlvIgaVLIpgakaPkLvt~e~vk~M--kpGsVivDV 267 (371)
T COG0686 233 DLVIGAVLIPGAKAPKLVTREMVKQM--KPGSVIVDV 267 (371)
T ss_pred cEEEEEEEecCCCCceehhHHHHHhc--CCCcEEEEE
Confidence 9999876543322221 122334444 367777633
No 347
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=25.43 E-value=1.1e+02 Score=22.32 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.0
Q ss_pred ccCCceEEeeccCCCCCCCCCceeEEEEeccCCc
Q 015771 350 RRGRQVAMDVCRSIKRDGSEGSFQHLVFTRSKNP 383 (400)
Q Consensus 350 kr~gHV~ld~Ct~~~~~~~~G~ler~~v~ks~~~ 383 (400)
+-.|.|++.+.-. ++|++....|.+|.|.
T Consensus 7 ~~~G~v~v~~~i~-----~~G~v~~~~i~~ssg~ 35 (74)
T TIGR01352 7 GIEGTVVVRFTVD-----ADGRVTSVSVLKSSGD 35 (74)
T ss_pred CCceEEEEEEEEC-----CCCCEEEEEEEEcCCC
Confidence 3468899998876 5999999999998764
No 348
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=25.38 E-value=2.5e+02 Score=27.74 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
...+||=+|+|+ |.++..++...+ ..++++++.+++-++.++.+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G--~~~vi~~~~~~~~~~~~~~~ 231 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRG--ASRIIGVDLNPSKFEQAKKF 231 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHHHc
Confidence 347899999863 344444555543 34799999999988887663
No 349
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=24.74 E-value=4.2e+02 Score=22.23 Aligned_cols=54 Identities=22% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCC-CcEEEEEeCCHHHHHH
Q 015771 13 LFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRS-LEKVNLVEPSQSMQRA 71 (400)
Q Consensus 13 a~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~-~~~v~~vD~S~~ml~~ 71 (400)
..+...|.+. ..++++.+|+-+|+|. .+... ...+... ..+++++|.+++-.+.
T Consensus 4 ~g~~~a~~~~---~~~~~~~~i~iiG~G~-~g~~~-a~~l~~~g~~~v~v~~r~~~~~~~ 58 (155)
T cd01065 4 LGFVRALEEA---GIELKGKKVLILGAGG-AARAV-AYALAELGAAKIVIVNRTLEKAKA 58 (155)
T ss_pred HHHHHHHHhh---CCCCCCCEEEEECCcH-HHHHH-HHHHHHCCCCEEEEEcCCHHHHHH
Confidence 3344444432 2346678999999973 22221 1111112 3679999999765443
No 350
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=24.12 E-value=2.4e+02 Score=27.32 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHCCCCCCCeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCCH
Q 015771 11 CLLFTLLVTESFARRLPGFSPAKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPSQ 66 (400)
Q Consensus 11 ~Ya~~~~vL~el~~rlp~~~p~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S~ 66 (400)
++..+.+.|.+. ...++.+++|=+|+| |++.-.+...-.....++++++.+.
T Consensus 109 D~~G~~~~l~~~---~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 109 DGLGFVRNLREH---GVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CHHHHHHHHHhc---CCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 344445555432 223456789999998 6553222211112345699999985
No 351
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=24.11 E-value=3e+02 Score=27.14 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=30.4
Q ss_pred CCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 30 SPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 30 ~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
...+||=+|+|+ |.++..++..++ ..+|++++.+++-++.++.+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G--~~~Vi~~~~~~~~~~~~~~~ 228 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAG--ASRIIGVDINEDKFEKAKEF 228 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHc
Confidence 347888889863 444445555553 34799999999888887653
No 352
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=23.37 E-value=4.7e+02 Score=25.52 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=27.8
Q ss_pred CCCeEEEEccchhH--HHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHhhc
Q 015771 30 SPAKVLDFGAGTGS--AFWALREVWPRSLEKVNLVEPSQSMQRAGQSLMQ 77 (400)
Q Consensus 30 ~p~~VLDvG~G~Gt--~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~ll~ 77 (400)
+..+||=+|+|-.+ .++++.+ ....+++++..+.+-.+.....+.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~---~g~~~i~V~NRt~~ra~~La~~~~ 171 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAE---AGAKRITVVNRTRERAEELADLFG 171 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH---cCCCEEEEEeCCHHHHHHHHHHhh
Confidence 35789999998332 2344443 234689999998765443333343
No 353
>PTZ00357 methyltransferase; Provisional
Probab=22.65 E-value=4.7e+02 Score=29.25 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=24.8
Q ss_pred CeEEEEccchhHHHHH---HHHHCCCCCcEEEEEeCCHH
Q 015771 32 AKVLDFGAGTGSAFWA---LREVWPRSLEKVNLVEPSQS 67 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~A---l~~~~~~~~~~v~~vD~S~~ 67 (400)
..|+=+|+|-|-++-+ +.+..+ ...++++||-++.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~g-vkVrIyAVEKNPp 739 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALG-VRLRIFAIEKNLP 739 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcC-CcEEEEEEecCcc
Confidence 4689999999977543 333333 3468999999955
No 354
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=22.17 E-value=2.8e+02 Score=27.49 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=29.8
Q ss_pred CCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHHHHHHHh
Q 015771 31 PAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQRAGQSL 75 (400)
Q Consensus 31 p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml~~a~~l 75 (400)
..+||=.|+|+ |.++.+++...+ ..+|+++|.+++-+++++++
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G--~~~Vi~~~~~~~r~~~a~~~ 235 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAG--ASQVVAVDLNEDKLALAREL 235 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHHc
Confidence 46888899873 444444555443 33699999999988888764
No 355
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=22.06 E-value=1e+02 Score=31.78 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=14.3
Q ss_pred cCCeEEEEcCCCCCch
Q 015771 134 TRDVLVLVEPGTPQGS 149 (400)
Q Consensus 134 ~gG~LVlVE~Gtp~Gf 149 (400)
..|.||++|..+|.|-
T Consensus 119 ~kG~LVIlEST~~PGT 134 (436)
T COG0677 119 KKGDLVILESTTPPGT 134 (436)
T ss_pred CCCCEEEEecCCCCCc
Confidence 3699999999999996
No 356
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=20.87 E-value=1.6e+02 Score=27.80 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=22.2
Q ss_pred CeEEEEccchhHHHHHHHHHCCCCCcEEEEEeCC
Q 015771 32 AKVLDFGAGTGSAFWALREVWPRSLEKVNLVEPS 65 (400)
Q Consensus 32 ~~VLDvG~G~Gt~~~Al~~~~~~~~~~v~~vD~S 65 (400)
.+||=+||| |.+.+.+..+-.....+++.+|..
T Consensus 12 ~~VlVvG~G-GvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 12 AHVAVVGLG-GVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred CCEEEECCC-HHHHHHHHHHHHcCCCEEEEECCC
Confidence 689999998 555554433322346788988864
No 357
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=20.33 E-value=3.3e+02 Score=28.23 Aligned_cols=60 Identities=12% Similarity=-0.056 Sum_probs=39.9
Q ss_pred HHHHhHHHHHHHHHHHHHHC-CCCCCCeEEEEccch-hHHHHHHHHHCCCCCcEEEEEeCCHHHH
Q 015771 7 LLLECLLFTLLVTESFARRL-PGFSPAKVLDFGAGT-GSAFWALREVWPRSLEKVNLVEPSQSMQ 69 (400)
Q Consensus 7 ~~~~~Ya~~~~vL~el~~rl-p~~~p~~VLDvG~G~-Gt~~~Al~~~~~~~~~~v~~vD~S~~ml 69 (400)
.|...|.+-..+++-+.+.. ..+..++|+=+|+|. |..+...+..++ .+|+++|.++.-.
T Consensus 187 ~~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~G---a~ViV~d~dp~ra 248 (425)
T PRK05476 187 KFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLG---ARVIVTEVDPICA 248 (425)
T ss_pred cccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCC---CEEEEEcCCchhh
Confidence 45556777777777665442 234668999999995 555544555554 4799999988653
No 358
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.32 E-value=9.8e+02 Score=24.85 Aligned_cols=124 Identities=16% Similarity=0.268 Sum_probs=56.6
Q ss_pred CCCeEEEEc-cchhH--HHHHHHHHCCCCCcEEEEEeCCH---HHHHHHHHhhcCCCCCCceeec---hhhhHhhhhccc
Q 015771 30 SPAKVLDFG-AGTGS--AFWALREVWPRSLEKVNLVEPSQ---SMQRAGQSLMQGPKDLPLIHSY---NSIQALNKDISK 100 (400)
Q Consensus 30 ~p~~VLDvG-~G~Gt--~~~Al~~~~~~~~~~v~~vD~S~---~ml~~a~~ll~~~~~~~~~~~~---~~~~~l~~~l~~ 100 (400)
.|..|+=+| .|.|= .+..++..+.....++..|+.+. ...+..+.+.... ++|+.... .....+...+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~-gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKI-GVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHc-CCcEEecCCccCHHHHHHHHHHH
Confidence 466788888 46672 22223333333334666666543 2223223333222 33332110 000111111111
Q ss_pred CCCcccEEeecccccCCCCHHHHHHHHHHHHh--ccCCeEEEEcCCCCCchHHHHHHHHH
Q 015771 101 SEREHDLVIASYVLGEVPSLQDRITIVRQLWD--LTRDVLVLVEPGTPQGSSIISQMRSH 158 (400)
Q Consensus 101 ~~~~~DLVias~~L~eL~~~~~r~~~i~~Lw~--~~gG~LVlVE~Gtp~Gf~~I~~aR~~ 158 (400)
...+|+||.--.=. +.......+-+..+.+ .+..++++++..+ |...+..++.+
T Consensus 173 -~~~~DvVIIDTAGr-~~~d~~lm~El~~l~~~~~pdevlLVvda~~--gq~av~~a~~F 228 (437)
T PRK00771 173 -FKKADVIIVDTAGR-HALEEDLIEEMKEIKEAVKPDEVLLVIDATI--GQQAKNQAKAF 228 (437)
T ss_pred -hhcCCEEEEECCCc-ccchHHHHHHHHHHHHHhcccceeEEEeccc--cHHHHHHHHHH
Confidence 12358887654411 1123334444444433 2678888888766 56777777664
Done!