Query 015772
Match_columns 400
No_of_seqs 409 out of 1696
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 18:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.8 2.5E-19 8.5E-24 144.1 5.8 63 228-290 19-81 (84)
2 2dmt_A Homeobox protein BARH-l 99.8 2.6E-19 8.9E-24 143.1 5.2 63 228-290 14-76 (80)
3 1nk2_P Homeobox protein VND; h 99.8 3.5E-19 1.2E-23 141.4 5.2 67 229-295 7-73 (77)
4 2da3_A Alpha-fetoprotein enhan 99.8 3E-19 1E-23 142.0 4.5 62 229-290 15-76 (80)
5 2vi6_A Homeobox protein nanog; 99.8 2.3E-19 7.9E-24 136.6 3.2 61 230-290 2-62 (62)
6 1wh5_A ZF-HD homeobox family p 99.8 5.3E-19 1.8E-23 142.0 5.1 60 229-288 15-78 (80)
7 2h1k_A IPF-1, pancreatic and d 99.7 4.5E-19 1.5E-23 135.5 3.8 60 230-289 2-61 (63)
8 2cra_A Homeobox protein HOX-B1 99.7 5.7E-19 1.9E-23 137.6 4.3 62 229-290 5-66 (70)
9 2cue_A Paired box protein PAX6 99.7 1.2E-18 4E-23 139.3 5.6 63 229-291 5-67 (80)
10 2dmu_A Homeobox protein goosec 99.7 8.8E-19 3E-23 136.4 4.7 62 229-290 5-66 (70)
11 2da2_A Alpha-fetoprotein enhan 99.7 9.1E-19 3.1E-23 136.2 4.2 62 229-290 5-66 (70)
12 2dmq_A LIM/homeobox protein LH 99.7 1.1E-18 3.9E-23 139.0 4.8 64 229-292 5-68 (80)
13 2dms_A Homeobox protein OTX2; 99.7 1.1E-18 3.8E-23 139.3 4.4 64 229-292 5-68 (80)
14 2djn_A Homeobox protein DLX-5; 99.7 1E-18 3.4E-23 136.2 3.9 62 229-290 5-66 (70)
15 3a01_A Homeodomain-containing 99.7 1.7E-18 5.7E-23 142.5 5.1 65 229-293 15-79 (93)
16 2e1o_A Homeobox protein PRH; D 99.7 1.9E-18 6.5E-23 134.6 4.9 61 230-290 6-66 (70)
17 2hdd_A Protein (engrailed home 99.7 1.1E-18 3.7E-23 132.4 3.4 58 231-288 3-60 (61)
18 1wh7_A ZF-HD homeobox family p 99.7 1.8E-18 6.1E-23 139.1 4.4 59 229-288 15-78 (80)
19 1fjl_A Paired protein; DNA-bin 99.7 2.3E-18 7.7E-23 137.8 4.9 63 229-291 16-78 (81)
20 2da1_A Alpha-fetoprotein enhan 99.7 1.3E-18 4.5E-23 135.3 3.3 62 229-290 5-66 (70)
21 1zq3_P PRD-4, homeotic bicoid 99.7 2.1E-18 7.2E-23 133.8 4.4 62 231-292 2-63 (68)
22 1puf_A HOX-1.7, homeobox prote 99.7 4E-18 1.4E-22 135.2 6.1 63 229-291 11-73 (77)
23 1ig7_A Homeotic protein MSX-1; 99.7 2.1E-18 7.2E-23 129.3 4.2 57 232-288 1-57 (58)
24 1yz8_P Pituitary homeobox 2; D 99.7 8.2E-19 2.8E-23 136.0 1.9 64 229-292 1-64 (68)
25 1bw5_A ISL-1HD, insulin gene e 99.7 1.6E-18 5.5E-23 133.5 3.0 61 230-290 2-62 (66)
26 1b8i_A Ultrabithorax, protein 99.7 1.8E-18 6.3E-23 138.7 3.3 62 229-290 18-79 (81)
27 2l7z_A Homeobox protein HOX-A1 99.7 2.7E-18 9.3E-23 135.0 4.0 62 230-291 6-67 (73)
28 2r5y_A Homeotic protein sex co 99.7 2.2E-18 7.7E-23 140.0 3.3 62 229-290 26-87 (88)
29 1jgg_A Segmentation protein EV 99.7 3E-18 1E-22 129.6 3.7 58 232-289 2-59 (60)
30 1ahd_P Antennapedia protein mu 99.7 2.2E-18 7.4E-23 133.8 3.1 61 231-291 2-62 (68)
31 2m0c_A Homeobox protein arista 99.7 3.6E-18 1.2E-22 134.0 4.3 64 228-291 6-69 (75)
32 2da4_A Hypothetical protein DK 99.7 1.7E-18 5.7E-23 138.3 2.4 62 229-290 6-71 (80)
33 1ftt_A TTF-1 HD, thyroid trans 99.7 3.4E-18 1.2E-22 132.6 3.7 61 231-291 2-62 (68)
34 3rkq_A Homeobox protein NKX-2. 99.7 4E-18 1.4E-22 127.2 3.8 57 231-287 2-58 (58)
35 1uhs_A HOP, homeodomain only p 99.7 5.5E-18 1.9E-22 132.7 4.2 59 232-290 2-61 (72)
36 2ecc_A Homeobox and leucine zi 99.7 5.5E-18 1.9E-22 135.3 4.1 59 233-291 5-63 (76)
37 2k40_A Homeobox expressed in E 99.7 3.9E-18 1.3E-22 131.7 3.0 62 231-292 1-62 (67)
38 2hi3_A Homeodomain-only protei 99.7 7.6E-18 2.6E-22 132.4 4.5 60 231-290 2-62 (73)
39 1akh_A Protein (mating-type pr 99.7 4.3E-18 1.5E-22 128.9 2.9 59 229-287 3-61 (61)
40 3nar_A ZHX1, zinc fingers and 99.7 5.7E-18 2E-22 139.9 3.5 64 229-292 23-86 (96)
41 1b72_A Protein (homeobox prote 99.7 7.4E-18 2.5E-22 139.4 3.7 63 229-291 32-94 (97)
42 2da5_A Zinc fingers and homeob 99.7 9.2E-18 3.2E-22 132.7 4.0 60 232-291 8-67 (75)
43 3a02_A Homeobox protein arista 99.7 7E-18 2.4E-22 127.5 3.0 57 234-290 2-58 (60)
44 1puf_B PRE-B-cell leukemia tra 99.7 1.2E-17 4.2E-22 130.9 4.0 65 231-295 1-68 (73)
45 3a03_A T-cell leukemia homeobo 99.7 1.1E-17 3.8E-22 125.0 3.5 54 236-289 2-55 (56)
46 1x2n_A Homeobox protein pknox1 99.7 1.5E-17 5E-22 130.5 4.3 63 229-291 5-70 (73)
47 2ly9_A Zinc fingers and homeob 99.7 1.4E-17 4.7E-22 130.8 4.0 62 230-291 5-66 (74)
48 2dn0_A Zinc fingers and homeob 99.7 1.3E-17 4.5E-22 132.0 3.2 61 231-291 8-68 (76)
49 1b72_B Protein (PBX1); homeodo 99.7 2.7E-17 9.4E-22 132.9 4.6 62 232-293 2-66 (87)
50 2cuf_A FLJ21616 protein; homeo 99.7 2.6E-17 8.9E-22 135.6 4.3 63 229-291 5-82 (95)
51 1du6_A PBX1, homeobox protein 99.7 1.8E-17 6.1E-22 126.7 2.5 58 231-288 3-63 (64)
52 2ecb_A Zinc fingers and homeob 99.7 1.9E-17 6.6E-22 135.8 2.2 57 235-291 15-71 (89)
53 2cqx_A LAG1 longevity assuranc 99.6 1.9E-17 6.7E-22 130.4 1.3 60 231-290 8-68 (72)
54 1k61_A Mating-type protein alp 99.6 5.6E-17 1.9E-21 122.4 3.7 56 234-289 1-59 (60)
55 2dmn_A Homeobox protein TGIF2L 99.6 9.1E-17 3.1E-21 129.5 4.7 62 230-291 6-70 (83)
56 1au7_A Protein PIT-1, GHF-1; c 99.6 6.8E-17 2.3E-21 143.2 3.5 62 228-289 84-145 (146)
57 2dmp_A Zinc fingers and homeob 99.6 1.3E-16 4.5E-21 130.3 4.9 58 234-291 16-73 (89)
58 2da6_A Hepatocyte nuclear fact 99.6 1.7E-16 5.9E-21 133.1 5.3 62 229-290 4-86 (102)
59 1mnm_C Protein (MAT alpha-2 tr 99.6 1.3E-16 4.4E-21 129.3 4.2 58 230-287 26-86 (87)
60 1e3o_C Octamer-binding transcr 99.6 8.3E-17 2.8E-21 144.5 3.1 61 229-289 99-159 (160)
61 1le8_B Mating-type protein alp 99.6 1E-16 3.6E-21 129.0 3.2 60 232-291 3-65 (83)
62 2xsd_C POU domain, class 3, tr 99.6 9.7E-17 3.3E-21 144.9 2.8 63 229-291 97-159 (164)
63 2l9r_A Homeobox protein NKX-3. 99.6 9.4E-17 3.2E-21 125.8 1.8 57 236-292 9-65 (69)
64 3d1n_I POU domain, class 6, tr 99.6 2.5E-16 8.5E-21 139.9 4.5 60 229-288 91-150 (151)
65 1lfb_A Liver transcription fac 99.6 1.5E-16 5E-21 132.9 2.4 63 229-291 7-90 (99)
66 2e19_A Transcription factor 8; 99.6 2.8E-16 9.5E-21 121.2 3.3 55 235-289 7-61 (64)
67 1wi3_A DNA-binding protein SAT 99.6 4E-16 1.4E-20 121.8 4.0 59 229-287 5-64 (71)
68 3nau_A Zinc fingers and homeob 99.6 3.5E-16 1.2E-20 121.5 3.2 52 239-290 12-63 (66)
69 1x2m_A LAG1 longevity assuranc 99.6 2.5E-16 8.7E-21 121.8 1.6 50 240-289 9-59 (64)
70 3l1p_A POU domain, class 5, tr 99.6 6.6E-16 2.3E-20 138.0 3.8 61 229-289 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 9.1E-16 3.1E-20 137.7 2.9 63 229-291 95-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.5 1.6E-15 5.4E-20 117.7 2.7 60 236-295 3-65 (67)
73 1ic8_A Hepatocyte nuclear fact 99.4 2.3E-14 7.8E-19 132.8 0.7 61 228-288 112-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.3 6.1E-13 2.1E-17 109.1 3.8 54 236-289 10-66 (89)
75 2da7_A Zinc finger homeobox pr 99.3 9.6E-13 3.3E-17 103.2 2.5 47 240-286 14-60 (71)
76 2h8r_A Hepatocyte nuclear fact 99.3 9.3E-13 3.2E-17 124.0 2.7 60 228-287 139-219 (221)
77 1mh3_A Maltose binding-A1 home 99.2 1.2E-12 4.2E-17 129.3 0.7 56 232-287 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 8.2E-10 2.8E-14 76.5 -1.2 26 273-298 1-26 (37)
79 2ys9_A Homeobox and leucine zi 92.3 0.043 1.5E-06 42.8 1.4 40 242-281 17-56 (70)
80 3oka_C N-terminal His-affinity 81.3 0.41 1.4E-05 28.3 0.6 10 28-37 5-14 (21)
81 1ydx_A Type I restriction enzy 80.6 0.33 1.1E-05 47.3 0.1 22 26-47 3-24 (406)
82 1jr2_A Uroporphyrinogen-III sy 80.1 0.25 8.7E-06 46.6 -1.0 22 26-47 3-24 (286)
83 2o2o_A SH3-domain kinase-bindi 79.7 0.77 2.6E-05 36.8 1.9 27 7-33 66-92 (92)
84 4g1u_A Hemin transport system 78.7 0.41 1.4E-05 47.8 0.0 10 27-36 4-13 (357)
85 2oar_A Large-conductance mecha 77.9 0.41 1.4E-05 43.3 -0.2 19 26-44 3-21 (174)
86 2yjp_A Putative ABC transporte 76.3 0.53 1.8E-05 43.3 0.0 10 27-36 4-13 (291)
87 3cio_A ETK, tyrosine-protein k 76.1 0.67 2.3E-05 44.3 0.7 21 46-66 25-45 (299)
88 2jn6_A Protein CGL2762, transp 76.0 0.54 1.8E-05 37.1 -0.0 42 236-281 4-46 (97)
89 1hjb_A Ccaat/enhancer binding 75.0 6.4 0.00022 31.7 6.1 40 283-322 29-72 (87)
90 3llq_A Aquaporin Z 2; aquapori 74.8 0.61 2.1E-05 44.5 0.0 8 28-35 10-17 (256)
91 3uau_A JLPA, surface-exposed l 74.0 0.65 2.2E-05 45.0 0.0 16 48-63 17-32 (379)
92 1svj_A Potassium-transporting 68.5 1 3.5E-05 39.6 0.0 13 27-39 4-16 (156)
93 2bu3_A ALR0975 protein; phytoc 68.4 1 3.6E-05 43.0 0.0 26 20-45 7-32 (254)
94 2yln_A Putative ABC transporte 67.5 1.1 3.8E-05 41.0 0.0 21 26-46 3-23 (283)
95 2lwx_A Zuotin; J-protein, mole 67.0 0.76 2.6E-05 38.5 -1.1 14 27-40 4-17 (108)
96 1hlv_A CENP-B, major centromer 67.0 4 0.00014 33.4 3.4 49 233-284 3-51 (131)
97 2es4_D Lipase chaperone; prote 67.0 1.2 4E-05 44.2 0.0 11 27-37 3-13 (332)
98 4akr_B F-actin-capping protein 66.6 1.2 4.1E-05 43.3 0.0 12 28-39 3-14 (290)
99 1gu4_A CAAT/enhancer binding p 66.4 11 0.00038 29.7 5.6 36 282-320 28-63 (78)
100 2glo_A Brinker CG9653-PA; prot 65.0 2.8 9.5E-05 30.2 1.8 45 235-280 3-47 (59)
101 4axs_A Carbamate kinase; oxido 63.9 1.4 4.9E-05 43.4 0.0 10 27-36 4-13 (332)
102 4faj_A PRGZ; substrate binding 63.8 1.5 5E-05 43.1 0.0 12 28-39 3-14 (564)
103 4dve_A Biotin transporter BIOY 62.5 1.6 5.5E-05 40.2 0.0 8 28-35 2-9 (198)
104 1uoz_A Putative cellulase; hyd 62.1 1.6 5.6E-05 42.9 0.0 10 27-36 4-13 (315)
105 2px7_A 2-C-methyl-D-erythritol 60.8 1.8 6E-05 39.4 0.0 12 27-38 4-15 (236)
106 2c0d_A Thioredoxin peroxidase 60.4 1.8 6.2E-05 39.4 0.0 14 27-40 4-17 (221)
107 3odm_A Pepcase, PEPC, phosphoe 60.4 1.8 6.2E-05 45.5 0.0 11 27-37 4-14 (560)
108 1jxh_A Phosphomethylpyrimidine 60.3 1.8 6.3E-05 40.5 0.0 11 27-37 4-14 (288)
109 3b9f_I Protein C inhibitor; mi 60.2 1.8 6.3E-05 43.1 0.0 11 27-37 4-14 (395)
110 3dfz_A SIRC, precorrin-2 dehyd 60.0 1.9 6.3E-05 40.2 0.0 11 27-37 4-14 (223)
111 3a5i_A Flagellar biosynthesis 59.6 1.9 6.5E-05 43.5 0.0 13 27-39 4-16 (389)
112 2axq_A Saccharopine dehydrogen 59.6 1.9 6.5E-05 44.1 0.0 20 255-274 268-287 (467)
113 1d1d_A Protein (capsid protein 58.6 2 6.9E-05 41.2 0.0 17 291-307 183-199 (262)
114 3nk4_C ZONA pellucida 3; ferti 58.6 2.8 9.6E-05 26.7 0.6 6 28-33 24-29 (30)
115 3oti_A CALG3; calicheamicin, T 58.4 2.1 7E-05 41.2 0.0 11 265-275 315-325 (398)
116 2elh_A CG11849-PA, LD40883P; s 57.2 7.3 0.00025 30.2 3.0 43 232-279 17-59 (87)
117 3etc_A AMP-binding protein; ad 56.8 2.3 7.8E-05 43.9 0.0 18 26-43 3-20 (580)
118 2qrj_A Saccharopine dehydrogen 56.5 2.3 7.9E-05 43.0 0.0 22 261-282 230-251 (394)
119 2hzs_I RNA polymerase II media 55.7 3.9 0.00013 25.5 0.9 10 25-34 18-27 (27)
120 2l8s_A Integrin alpha-1; trans 55.6 3.8 0.00013 30.3 1.0 15 19-33 39-53 (54)
121 3tcm_A Alanine aminotransferas 55.2 2.5 8.6E-05 42.7 0.0 12 27-38 3-14 (500)
122 1qwz_A NPQTN specific sortase 54.8 3.7 0.00013 38.4 1.1 9 247-255 138-146 (235)
123 3rlb_A THIT; S-component, ECF 54.8 2.3 7.8E-05 38.9 -0.3 8 28-35 2-9 (192)
124 2xci_A KDO-transferase, 3-deox 54.7 2.6 8.8E-05 41.0 0.0 11 27-37 4-14 (374)
125 3k9f_C DNA topoisomerase 4 sub 54.2 2.7 9.1E-05 40.4 0.0 8 48-55 17-24 (268)
126 1jko_C HIN recombinase, DNA-in 53.9 3.8 0.00013 27.4 0.8 42 237-283 5-46 (52)
127 3llq_A Aquaporin Z 2; aquapori 53.4 2.8 9.6E-05 39.9 0.0 11 25-35 10-20 (256)
128 4b1m_A Levanase; hydrolase, CB 53.3 2.8 9.6E-05 37.3 0.0 14 27-40 4-17 (185)
129 3b0g_A NII3, nitrite reductase 53.3 2.8 9.6E-05 44.3 0.0 11 27-37 4-14 (591)
130 3c0t_B Mediator of RNA polymer 53.2 3 0.0001 27.1 0.1 8 26-33 26-33 (33)
131 2c07_A 3-oxoacyl-(acyl-carrier 52.2 3 0.0001 38.6 0.0 15 50-64 16-30 (285)
132 1k8w_A TRNA pseudouridine synt 51.9 3 0.0001 41.2 0.0 12 27-38 4-15 (327)
133 2f8m_A Ribose 5-phosphate isom 51.7 3.3 0.00011 39.1 0.2 27 27-53 3-30 (244)
134 4gsx_A Envelope protein E; vir 51.5 3.1 0.00011 42.4 0.0 15 28-42 2-16 (427)
135 3tut_A RNA 3'-terminal phospha 51.3 3.2 0.00011 41.5 0.0 12 27-38 3-14 (358)
136 2apo_A Probable tRNA pseudouri 49.6 3.5 0.00012 41.2 0.0 14 238-251 140-153 (357)
137 3e5n_A D-alanine-D-alanine lig 49.3 3.5 0.00012 40.7 0.0 12 29-40 3-14 (386)
138 3pnr_B Pbicp-C; immunoglobulin 48.9 3.6 0.00012 36.7 0.0 13 27-39 4-16 (187)
139 2l4h_A Calcium and integrin-bi 48.9 3.6 0.00012 36.6 0.0 16 253-268 143-158 (214)
140 1tc3_C Protein (TC3 transposas 48.7 8.6 0.00029 25.0 1.9 40 237-281 5-44 (51)
141 2r9r_B Paddle chimera voltage 48.0 3.8 0.00013 42.4 0.0 8 28-35 5-12 (514)
142 2d2a_A SUFA protein; iron-sulf 47.9 3.8 0.00013 35.7 0.0 10 28-37 5-14 (145)
143 4e4j_A Arginine deiminase; L-a 47.5 3.9 0.00013 41.3 0.0 12 27-38 4-15 (433)
144 2ygr_A Uvrabc system protein A 47.3 4 0.00014 45.9 0.0 12 27-38 4-15 (993)
145 1ttz_A Conserved hypothetical 47.3 4 0.00014 31.9 0.0 12 23-34 76-87 (87)
146 2lie_A CCL2 lectin; sugar bind 52.6 4.1 0.00014 35.5 0.0 10 28-37 3-12 (153)
147 1dip_A Delta-sleep-inducing pe 46.8 66 0.0022 25.2 6.8 32 293-324 15-46 (78)
148 3hug_A RNA polymerase sigma fa 46.7 9.9 0.00034 29.4 2.3 46 237-287 37-82 (92)
149 3fg7_A Villin-1; actin binding 46.3 4.2 0.00014 40.9 0.0 10 273-282 216-225 (398)
150 3tla_A MCCF; serine protease, 46.1 4.3 0.00015 40.5 0.0 10 28-37 7-16 (371)
151 2bgs_A Aldose reductase; holoe 45.7 4.4 0.00015 39.7 0.0 40 240-279 169-215 (344)
152 3ggh_A K88 fimbrial protein AD 45.6 5.5 0.00019 38.4 0.7 9 28-36 5-13 (275)
153 3ces_A MNMG, tRNA uridine 5-ca 45.3 4.3 0.00015 43.5 -0.1 9 28-36 5-13 (651)
154 3c3r_A Programmed cell death 6 44.8 4.6 0.00016 40.1 0.0 10 28-37 4-13 (380)
155 2ekg_A Proline dehydrogenase/d 44.5 4.7 0.00016 39.7 0.0 11 28-38 3-13 (327)
156 3t21_A Endo-type membrane-boun 44.0 4.8 0.00016 36.8 0.0 29 256-284 136-165 (206)
157 2dgc_A Protein (GCN4); basic d 43.5 35 0.0012 25.5 4.8 28 295-322 32-59 (63)
158 1iuf_A Centromere ABP1 protein 43.1 18 0.00062 30.6 3.5 52 232-283 6-61 (144)
159 3icu_A E3 ubiquitin-protein li 42.8 5.4 0.00019 36.5 0.2 23 26-48 3-25 (194)
160 1wuf_A Hypothetical protein LI 42.6 2.5 8.4E-05 42.0 -2.4 14 48-61 22-35 (393)
161 3a4u_B Multiple coagulation fa 42.5 5.2 0.00018 33.4 0.0 6 255-260 84-89 (143)
162 2zyd_A 6-phosphogluconate dehy 42.2 5.3 0.00018 40.8 0.0 8 28-35 5-12 (480)
163 3k6j_A Protein F01G10.3, confi 42.0 5.7 0.0002 40.8 0.2 10 28-37 3-12 (460)
164 1wue_A Mandelate racemase/muco 41.9 5.4 0.00019 39.3 0.0 13 49-61 23-35 (386)
165 2l72_A Tgadf, actin depolymeri 41.7 5.5 0.00019 34.2 0.0 13 27-39 4-16 (139)
166 4hnl_A Mandelate racemase/muco 41.4 5.6 0.00019 39.8 0.0 12 256-267 232-243 (421)
167 1xhj_A Nitrogen fixation prote 41.4 7.6 0.00026 31.2 0.8 9 25-33 80-88 (88)
168 2x7l_M HIV REV; nuclear export 41.2 17 0.00056 30.7 2.8 37 243-293 15-51 (115)
169 1pqx_A Conserved hypothetical 40.8 7.9 0.00027 31.3 0.8 10 24-33 82-91 (91)
170 2y8u_A Chitin deacetylase; hyd 40.8 5.8 0.0002 36.4 0.0 12 260-271 137-148 (230)
171 2gmg_A Hypothetical protein PF 40.6 14 0.00048 30.7 2.3 20 30-49 2-21 (105)
172 2l3u_A YBBR family protein; be 40.3 7.8 0.00027 31.1 0.7 7 27-33 92-98 (98)
173 2w2u_A Hypothetical P60 katani 39.9 9.1 0.00031 30.2 1.0 24 28-51 3-26 (83)
174 4fl4_A Glycoside hydrolase fam 39.8 6.1 0.00021 31.8 0.0 10 28-37 5-14 (88)
175 3sjd_D Golgi to ER traffic pro 39.6 5.4 0.00019 28.3 -0.3 22 28-49 3-24 (46)
176 1p4w_A RCSB; solution structur 39.3 24 0.00081 28.3 3.5 47 235-287 32-78 (99)
177 1t3o_A Carbon storage regulato 39.2 6.3 0.00021 32.3 -0.0 9 28-36 5-13 (95)
178 2oxg_Y SOXY protein; immunoglo 39.1 8.8 0.0003 32.8 0.9 24 30-53 5-28 (124)
179 2l7b_A Apolipoprotein E, APO-E 39.0 3.5 0.00012 40.2 -1.8 13 28-40 1-13 (307)
180 2gjh_A Designed protein; oblig 38.7 7.4 0.00025 28.5 0.3 6 27-32 56-61 (62)
181 2exd_A NFED short homolog; mem 38.2 6.7 0.00023 30.8 -0.0 11 23-33 70-80 (80)
182 4dtg_K Tissue factor pathway i 38.2 8 0.00027 29.2 0.4 8 17-24 43-50 (66)
183 2kcc_A Acetyl-COA carboxylase 37.9 11 0.00038 29.0 1.2 8 25-32 76-83 (84)
184 2lbb_A Acyl COA binding protei 37.7 8.3 0.00028 31.5 0.5 18 29-46 3-20 (96)
185 2hdi_B Colicin-IA; outer membr 37.3 7 0.00024 31.6 0.0 6 46-51 17-22 (113)
186 2ivd_A PPO, PPOX, protoporphyr 37.1 7.1 0.00024 38.4 0.0 7 28-34 4-10 (478)
187 3quf_A Extracellular solute-bi 36.9 7.2 0.00025 37.4 0.0 17 27-43 4-20 (414)
188 4amu_A Ornithine carbamoyltran 36.8 7.3 0.00025 39.0 0.0 11 27-37 4-14 (365)
189 1je8_A Nitrate/nitrite respons 36.7 21 0.00073 27.1 2.7 47 236-288 20-66 (82)
190 2kq8_A Cell WALL hydrolase; GF 36.4 11 0.00039 28.1 1.1 11 23-33 60-70 (70)
191 2kvz_A ISPE; structural genomi 36.3 13 0.00044 29.7 1.4 9 25-33 77-85 (85)
192 3c57_A Two component transcrip 36.3 13 0.00045 29.1 1.5 45 237-287 27-71 (95)
193 4ex8_A ALNA; alpha/beta/alpha- 36.3 7.5 0.00026 38.2 0.0 15 265-279 261-275 (316)
194 2lv7_A Calcium-binding protein 36.2 33 0.0011 27.0 3.9 48 233-280 25-79 (100)
195 2rgt_A Fusion of LIM/homeobox 35.7 0.96 3.3E-05 39.6 -5.9 30 229-258 134-163 (169)
196 1t82_A Hypothetical acetyltran 35.6 14 0.00047 31.7 1.6 21 27-47 2-22 (155)
197 2pi2_E Replication protein A 1 35.5 7.8 0.00027 33.7 0.0 10 28-37 5-14 (142)
198 2kl8_A OR15; structural genomi 35.3 11 0.00036 29.2 0.7 8 26-33 78-85 (85)
199 1x3u_A Transcriptional regulat 35.3 15 0.00052 27.0 1.6 46 237-288 16-61 (79)
200 2y3s_A TAML; oxidoreductase; H 35.1 8 0.00027 40.1 0.0 10 28-37 4-13 (530)
201 2ln3_A De novo designed protei 35.1 11 0.00037 29.0 0.7 7 27-33 77-83 (83)
202 2kcp_A 30S ribosomal protein S 35.0 12 0.00041 30.8 1.0 9 25-33 90-98 (98)
203 1p99_A Hypothetical protein PG 34.9 8.1 0.00028 36.9 0.0 19 27-45 2-20 (295)
204 3c8x_A Ephrin type-A receptor 34.6 8.3 0.00028 35.7 0.0 13 27-39 3-15 (206)
205 3d31_C Sulfate/molybdate ABC t 34.5 8.3 0.00028 36.1 0.0 14 259-272 191-204 (295)
206 2r5o_A Putative ATP binding co 34.5 8.3 0.00029 34.2 0.0 6 30-35 5-10 (188)
207 4g2c_A DYP2; DYE peroxidase, o 34.5 8.3 0.00029 40.0 0.0 8 70-77 54-61 (493)
208 2qj6_A Toxin A; clostridial re 34.5 8.3 0.00029 37.6 0.0 11 27-37 4-14 (332)
209 3oc3_A Helicase MOT1, MOT1; re 34.4 8.4 0.00029 41.4 0.0 9 260-268 244-252 (800)
210 1nwa_A Peptide methionine sulf 34.4 8.4 0.00029 35.6 0.0 12 27-38 4-15 (203)
211 2k5p_A THis protein, thiamine- 34.4 12 0.00039 29.1 0.8 14 21-34 64-77 (78)
212 1vlu_A Gamma-glutamyl phosphat 34.3 12 0.00041 38.1 1.1 14 240-253 283-296 (468)
213 2w7q_A Outer-membrane lipoprot 34.3 8.4 0.00029 34.1 0.0 6 274-279 150-155 (204)
214 3ako_A Venus; fluorescent prot 34.1 8.5 0.00029 34.7 0.0 10 28-37 5-14 (173)
215 3q8g_A CRAL-TRIO domain-contai 33.8 8.7 0.0003 37.1 0.0 10 28-37 3-12 (320)
216 3p1i_A Ephrin type-B receptor 33.7 8.7 0.0003 35.4 0.0 14 26-39 3-16 (200)
217 2o8x_A Probable RNA polymerase 33.6 12 0.0004 26.8 0.7 46 237-287 15-60 (70)
218 3lph_A Protein REV; helix-loop 33.6 27 0.00092 27.1 2.7 38 243-294 18-55 (72)
219 2jny_A Uncharacterized BCR; st 33.3 11 0.00038 28.8 0.5 17 17-33 50-66 (67)
220 3lhp_S 4E10_D0_1ISEA_004_N (T9 33.3 15 0.00053 31.3 1.5 8 52-59 36-43 (123)
221 4a5x_A MITD1, MIT domain-conta 33.1 15 0.00053 29.0 1.4 20 28-47 4-23 (86)
222 1t2k_D Cyclic-AMP-dependent tr 32.9 97 0.0033 22.5 5.7 25 296-320 32-56 (61)
223 1fse_A GERE; helix-turn-helix 32.3 22 0.00077 25.6 2.1 46 236-287 10-55 (74)
224 3c1r_A Glutaredoxin-1; oxidize 31.9 12 0.00042 30.3 0.6 22 29-50 3-24 (118)
225 3q9v_A DNA-binding response re 31.9 9.8 0.00033 32.1 0.0 21 28-48 4-24 (133)
226 2kn0_A FN14; tweak, TNF recept 31.5 10 0.00034 28.7 0.0 8 25-32 58-65 (66)
227 2kjp_A Uncharacterized protein 31.4 13 0.00045 29.1 0.7 7 27-33 85-91 (91)
228 2ipi_A Aclacinomycin oxidoredu 31.4 10 0.00034 39.2 0.0 9 28-36 3-11 (521)
229 2j6v_A UV endonuclease, UVDE; 31.4 10 0.00034 36.4 0.0 9 263-271 149-157 (301)
230 2jz2_A SSL0352 protein; SH3-li 31.3 14 0.00046 28.2 0.7 7 27-33 60-66 (66)
231 2krs_A Probable enterotoxin; a 31.2 13 0.00046 28.0 0.7 7 27-33 68-74 (74)
232 2p0u_A Stilbenecarboxylate syn 31.1 11 0.00038 37.5 0.2 18 257-274 324-341 (413)
233 1s7o_A Hypothetical UPF0122 pr 31.1 38 0.0013 27.6 3.6 47 237-288 22-68 (113)
234 1xi6_A Extragenic suppressor; 31.1 14 0.00048 34.5 1.0 7 28-34 2-8 (262)
235 2lx9_A Ferrous iron transport 31.0 12 0.00042 29.1 0.4 12 22-33 72-83 (83)
236 1tyg_B YJBS; alpha beta barrel 31.0 10 0.00035 30.2 0.0 10 28-37 5-14 (87)
237 2k5l_A FEOA; structure, NESG, 30.4 12 0.00042 28.7 0.4 10 24-33 72-81 (81)
238 2kps_A Uncharacterized protein 30.4 14 0.00048 29.8 0.7 7 27-33 92-98 (98)
239 4h51_A Aspartate aminotransfer 30.2 9.1 0.00031 38.3 -0.6 17 236-252 205-221 (420)
240 1ci6_A Transcription factor AT 30.2 1.2E+02 0.004 22.4 5.8 27 296-322 33-59 (63)
241 1ci6_A Transcription factor AT 29.7 85 0.0029 23.2 5.0 29 293-321 23-51 (63)
242 3i5g_B Myosin regulatory light 29.7 79 0.0027 26.2 5.4 41 233-273 5-50 (153)
243 1vpb_A Putative modulator of D 29.7 14 0.0005 37.1 0.8 24 26-49 4-27 (451)
244 2kt8_A Probable surface protei 29.5 15 0.00051 28.0 0.7 10 24-33 67-76 (76)
245 1n9r_A SMF, small nuclear ribo 29.3 12 0.0004 30.1 0.1 22 30-51 2-23 (93)
246 3fl7_A Ephrin receptor; ATP-bi 29.2 12 0.0004 39.1 0.0 12 26-37 3-14 (536)
247 3ix9_A Dihydrofolate reductase 29.0 12 0.0004 33.9 0.0 8 28-35 3-10 (190)
248 2kjs_A Putative acyl carrier p 28.9 13 0.00046 29.1 0.3 8 26-33 80-87 (87)
249 3cpt_A Mitogen-activated prote 28.8 12 0.0004 32.8 0.0 15 38-52 22-36 (143)
250 2qf7_A Pyruvate carboxylase pr 28.8 12 0.0004 42.7 0.0 10 262-271 279-288 (1165)
251 1hxv_A Trigger factor; FKBP fo 28.7 12 0.00041 30.7 0.0 20 30-49 5-24 (113)
252 3cim_A Carbon dioxide-concentr 28.6 14 0.00049 30.1 0.5 13 21-33 87-99 (99)
253 2fyq_A Chymotrypsin-like cyste 28.6 9.2 0.00031 34.3 -0.7 22 28-49 3-24 (194)
254 2wt7_A Proto-oncogene protein 28.5 1.2E+02 0.004 22.3 5.5 23 298-320 28-50 (63)
255 2g0u_A Type III secretion syst 28.5 16 0.00054 29.8 0.7 7 27-33 86-92 (92)
256 2h7w_A Chagasin; beta-strands, 28.5 12 0.00041 32.0 0.0 18 28-45 4-21 (131)
257 2w7v_A General secretion pathw 28.3 12 0.00042 30.4 0.0 7 27-33 89-95 (95)
258 3qtc_A Pyrrolysyl-tRNA synthet 28.1 12 0.00042 35.4 0.0 8 28-35 3-10 (290)
259 2h4o_A YONK protein; PSI, prot 28.0 12 0.00043 28.3 0.0 8 18-25 54-61 (76)
260 2rcf_A Unidentified carboxysom 27.9 13 0.00043 30.2 0.0 8 25-32 83-90 (91)
261 2kl0_A Putative thiamin biosyn 27.8 18 0.0006 27.7 0.8 11 22-32 61-72 (73)
262 1sg7_A Putative cation transpo 27.5 13 0.00044 30.5 0.0 9 28-36 5-13 (96)
263 3slt_A Serine protease ESPP; b 27.4 18 0.00061 34.7 1.0 27 29-55 6-32 (313)
264 1o20_A Gamma-glutamyl phosphat 27.4 17 0.0006 36.3 1.0 13 28-40 7-19 (427)
265 3mzy_A RNA polymerase sigma-H 27.1 29 0.00099 28.2 2.1 45 237-287 109-153 (164)
266 2vt1_B Surface presentation of 27.1 13 0.00045 30.1 0.0 10 24-33 84-93 (93)
267 1k8m_A E2 component of branche 26.9 14 0.00048 29.1 0.1 12 22-33 82-93 (93)
268 2k4y_A FEOA-like protein; GFT 26.8 18 0.0006 28.2 0.7 6 27-32 80-85 (86)
269 1vry_A Glycine receptor alpha- 26.8 14 0.00046 29.0 0.0 10 24-33 67-76 (76)
270 1zbm_A Hypothetical protein AF 26.7 15 0.00052 33.2 0.3 14 264-277 222-236 (280)
271 2zqk_M Putative translocated i 26.7 14 0.00047 28.5 0.0 6 27-32 71-76 (77)
272 2kjg_A Archaeal protein SSO690 26.6 18 0.00062 29.3 0.7 7 27-33 93-99 (99)
273 2jov_A Hypothetical protein CP 26.5 18 0.00062 29.0 0.7 6 27-32 79-84 (85)
274 2qv7_A Diacylglycerol kinase D 26.3 14 0.00048 35.5 0.0 9 29-37 5-13 (337)
275 2l3g_A RHO guanine nucleotide 26.0 25 0.00086 29.7 1.6 17 30-46 4-20 (126)
276 1eyb_A Homogentisate 1,2-dioxy 25.9 14 0.00049 38.1 0.0 12 27-38 4-15 (471)
277 2ko1_A CTR148A, GTP pyrophosph 25.8 19 0.00065 26.8 0.7 7 27-33 82-88 (88)
278 2rn7_A IS629 ORFA; helix, all 25.8 41 0.0014 26.4 2.7 46 235-280 4-52 (108)
279 2p7v_B Sigma-70, RNA polymeras 25.6 23 0.00078 25.6 1.1 50 237-287 5-54 (68)
280 2dw3_A Intrinsic membrane prot 25.6 24 0.00083 27.7 1.2 11 23-33 67-77 (77)
281 2kci_A Putative acyl carrier p 25.5 19 0.00066 28.3 0.7 7 27-33 81-87 (87)
282 1jnm_A Proto-oncogene C-JUN; B 25.4 1.1E+02 0.0039 22.3 5.0 36 282-320 14-49 (62)
283 2x7q_A Ca3427, possible thiami 25.4 15 0.00051 34.3 0.0 20 262-281 242-261 (321)
284 3q23_A Virion RNA polymerase; 25.2 15 0.00051 40.8 0.0 25 236-260 334-358 (1118)
285 2oxj_A Hybrid alpha/beta pepti 25.2 1.3E+02 0.0045 20.0 4.5 25 300-324 8-32 (34)
286 3bux_B E3 ubiquitin-protein li 25.1 1.9 6.3E-05 42.6 -6.4 26 54-80 46-71 (329)
287 1p9h_A Invasin; collagen-bindi 25.1 15 0.00052 34.2 0.0 13 238-250 194-206 (226)
288 3jtz_A Integrase; four strande 25.1 15 0.00052 29.1 0.0 6 27-32 82-87 (88)
289 3pe9_A Fibronectin(III)-like m 25.0 15 0.00052 29.7 0.0 6 27-32 92-97 (98)
290 2dlb_A YOPT; SR412, X-RAY, NES 25.0 17 0.00058 28.3 0.3 10 24-33 71-80 (80)
291 2zi0_A Protein 2B, TAV2B; RNAI 24.8 15 0.00053 28.3 0.0 10 25-34 66-75 (75)
292 3pkr_A FLIG, flagellar motor s 24.7 16 0.00053 35.2 0.0 15 28-42 1-15 (279)
293 2vgq_A Maltose-binding peripla 24.6 16 0.00054 36.4 0.0 7 28-34 5-11 (477)
294 2wt7_A Proto-oncogene protein 24.6 1.9E+02 0.0063 21.2 6.0 35 289-323 26-60 (63)
295 2brx_A Uridylate kinase; UMP k 24.4 9.4 0.00032 35.3 -1.6 11 236-246 179-189 (244)
296 2htj_A P fimbrial regulatory p 24.3 21 0.00073 26.8 0.7 6 27-32 75-80 (81)
297 3i4i_A 1,3-1,4-beta-glucanase; 24.2 13 0.00043 34.6 -0.7 24 30-53 5-28 (234)
298 3rq9_A TSI2, type VI secretion 24.1 17 0.00058 28.6 0.1 6 27-32 79-84 (85)
299 3lyw_A YBBR family protein; st 24.0 16 0.00053 29.5 -0.1 7 27-33 84-90 (90)
300 2f99_A Aklanonic acid methyl e 24.0 18 0.00062 30.1 0.3 23 28-52 3-25 (153)
301 1uel_A HHR23B, UV excision rep 23.9 21 0.00071 27.9 0.6 8 26-33 88-95 (95)
302 2kyw_A Adhesion exoprotein; st 23.9 22 0.00075 28.0 0.7 6 27-32 81-86 (87)
303 1z00_A DNA excision repair pro 23.8 18 0.00061 28.1 0.2 6 27-32 83-88 (89)
304 2cmx_A ORF F-112, F112, hypoth 23.7 16 0.00054 30.4 -0.1 8 277-284 66-73 (118)
305 2rnj_A Response regulator prot 23.7 28 0.00097 26.7 1.3 47 236-288 28-74 (91)
306 2v7s_A Probable conserved lipo 23.5 17 0.00058 33.8 0.0 18 28-45 5-22 (215)
307 3s94_A LRP-6, low-density lipo 23.4 17 0.00058 38.1 0.0 8 28-35 1-8 (619)
308 3mlf_A Transcriptional regulat 23.4 14 0.00047 29.9 -0.6 19 255-273 62-80 (111)
309 3s9f_A Tryparedoxin; thioredox 23.3 12 0.0004 31.7 -1.1 20 260-279 116-135 (165)
310 3oe3_A Putative periplasmic pr 23.3 17 0.00059 29.8 0.0 7 27-33 92-98 (98)
311 1xsv_A Hypothetical UPF0122 pr 23.3 83 0.0028 25.4 4.2 47 237-288 25-71 (113)
312 2rm8_A Sensory rhodopsin II tr 23.0 23 0.00079 25.8 0.7 6 27-32 62-67 (68)
313 2klz_A Ataxin-3; UIM, ubiquiti 22.9 19 0.00063 26.1 0.1 8 26-33 45-52 (52)
314 2q58_A Fragment, farnesyl pyro 22.8 18 0.00061 35.8 0.0 28 238-269 285-312 (368)
315 4g1u_A Hemin transport system 22.8 18 0.00061 35.9 0.0 8 26-33 6-13 (357)
316 2k6p_A Uncharacterized protein 22.7 18 0.00061 28.2 0.0 6 27-32 86-91 (92)
317 1l8w_A VLSE1; variable surface 22.7 18 0.00061 36.0 0.0 10 29-38 5-14 (348)
318 2kvt_A Uncharacterized protein 22.7 28 0.00097 26.6 1.1 10 24-33 62-71 (71)
319 3gg8_A Pyruvate kinase; malari 22.6 16 0.00055 38.1 -0.4 21 28-48 2-22 (511)
320 1wuf_A Hypothetical protein LI 22.6 18 0.00062 35.6 0.0 7 29-35 5-11 (393)
321 3e8p_A Uncharacterized protein 22.6 30 0.001 29.7 1.4 24 27-50 3-26 (164)
322 2jz5_A Uncharacterized protein 22.5 24 0.00082 28.6 0.7 7 27-33 85-91 (91)
323 2ig6_A NIMC/NIMA family protei 22.4 24 0.00081 29.9 0.7 21 29-49 8-28 (150)
324 3b8m_A Ferric enterobactin (en 22.4 18 0.00063 34.5 0.0 12 239-250 129-140 (280)
325 1j5y_A Transcriptional regulat 22.3 30 0.001 30.3 1.4 22 27-48 6-27 (187)
326 1qxf_A GR2, 30S ribosomal prot 22.1 20 0.00067 27.5 0.1 10 24-33 57-66 (66)
327 3eyr_A Uncharacterized lipopro 22.0 20 0.00068 32.3 0.1 29 241-269 130-162 (178)
328 1vku_A Acyl carrier protein; T 22.0 35 0.0012 27.3 1.6 20 29-48 7-26 (100)
329 1ryq_A DNA-directed RNA polyme 22.0 18 0.00063 27.9 -0.1 11 29-39 2-12 (69)
330 3tc3_A UV damage endonuclease; 21.9 19 0.00065 35.2 0.0 12 27-38 4-15 (310)
331 2kct_A Cytochrome C-type bioge 21.9 21 0.0007 29.0 0.2 11 24-34 84-94 (94)
332 3hz7_A Uncharacterized protein 21.9 19 0.00065 28.3 0.0 10 24-33 78-87 (87)
333 2krx_A ASL3597 protein; struct 21.8 25 0.00085 28.7 0.7 6 27-32 88-93 (94)
334 2nwt_A UPF0165 protein AF_2212 21.8 25 0.00087 27.1 0.7 6 27-32 63-68 (69)
335 1pk1_B Sex COMB on midleg CG94 21.7 19 0.00066 28.6 0.0 8 27-34 82-89 (89)
336 1hw4_A TS, thymidylate synthas 21.7 19 0.00066 35.8 0.0 31 28-58 3-37 (355)
337 1r17_A Fibrinogen-binding prot 21.6 16 0.00054 35.9 -0.7 21 28-48 4-24 (343)
338 2noc_A Putative periplasmic pr 21.6 25 0.00086 28.8 0.7 8 26-33 91-98 (99)
339 3ayr_A Endoglucanase; TIM barr 21.5 18 0.00063 35.1 -0.2 26 27-52 3-32 (376)
340 2vqc_A Hypothetical 13.2 kDa p 21.5 19 0.00064 29.5 -0.1 17 271-287 60-76 (118)
341 2kmm_A Guanosine-3',5'-BIS(dip 21.5 27 0.00091 25.6 0.8 9 25-33 64-72 (73)
342 2lt9_A Protein SLC8A3; NCX, NC 27.1 20 0.00067 31.7 0.0 17 28-44 4-20 (157)
343 3otg_A CALG1; calicheamicin, T 21.5 20 0.00067 34.0 0.0 8 265-272 324-331 (412)
344 2jvd_A UPF0291 protein YNZC; s 21.5 33 0.0011 25.2 1.2 9 25-33 46-54 (54)
345 1v8p_A Hypothetical protein PA 21.5 20 0.00067 31.1 0.0 7 28-34 5-11 (158)
346 4dou_A Adiponectin; single-cha 21.4 20 0.00068 36.5 0.0 9 28-36 1-9 (442)
347 2f4i_A Hypothetical protein TM 21.4 13 0.00046 34.1 -1.1 27 26-52 4-30 (197)
348 2l02_A Uncharacterized protein 21.3 26 0.0009 27.9 0.7 8 26-33 75-82 (82)
349 3tze_A Tryptophanyl-tRNA synth 21.3 20 0.00068 36.2 0.0 14 268-281 171-184 (406)
350 2l09_A ASR4154 protein; proto- 21.3 27 0.00091 26.4 0.7 6 27-32 56-61 (62)
351 2fsd_A RBP, putative baseplate 21.2 20 0.00069 30.3 0.0 19 28-46 5-23 (142)
352 1q3t_A Cytidylate kinase; nucl 21.2 20 0.00069 32.1 0.0 7 28-34 3-9 (236)
353 2kru_A Light-independent proto 21.2 27 0.00091 26.5 0.7 7 27-33 57-63 (63)
354 3p04_A Uncharacterized BCR; SE 21.1 20 0.00069 28.7 0.0 7 27-33 81-87 (87)
355 2k5k_A Uncharacterized protein 21.0 20 0.0007 27.7 0.0 6 27-32 64-69 (70)
356 2l92_A Histone family protein 21.0 21 0.00073 25.9 0.1 6 27-32 44-49 (50)
357 2qu8_A Putative nucleolar GTP- 20.9 20 0.0007 31.5 -0.0 11 30-40 5-15 (228)
358 1hsk_A UDP-N-acetylenolpyruvoy 20.9 30 0.001 33.4 1.2 28 27-54 5-32 (326)
359 3jsb_A Protein L, RNA-directed 20.8 36 0.0012 31.2 1.5 21 28-48 3-23 (204)
360 1gu4_A CAAT/enhancer binding p 20.8 1.4E+02 0.0048 23.2 4.8 39 284-322 34-72 (78)
361 2jvw_A Uncharacterized protein 20.8 32 0.0011 27.6 1.1 14 20-33 75-88 (88)
362 2ks0_A Uncharacterized protein 20.8 30 0.001 26.7 0.9 8 26-33 64-71 (71)
363 2k47_A Phosphoprotein, P prote 20.8 22 0.00074 27.8 0.1 7 27-33 73-79 (79)
364 4g9s_A Lysozyme G, goose-type 20.8 26 0.00089 31.3 0.6 28 252-279 132-160 (187)
365 2k5r_A Uncharacterized protein 20.7 27 0.00093 28.6 0.7 6 27-32 91-96 (97)
366 2cqr_A RSGI RUH-043, DNAJ homo 20.7 1.1E+02 0.0037 23.4 4.1 44 232-275 15-59 (73)
367 3h43_A Proteasome-activating n 20.7 22 0.00075 28.1 0.1 10 24-33 76-85 (85)
368 2l01_A Uncharacterized protein 20.6 28 0.00096 27.4 0.7 8 26-33 70-77 (77)
369 2xdj_A Uncharacterized protein 20.5 21 0.00072 28.3 0.0 6 27-32 77-82 (83)
370 1zxj_A MPN555, hypothetical pr 20.5 22 0.00075 33.0 0.1 7 28-34 5-11 (218)
371 2c43_A Aminoadipate-semialdehy 20.4 21 0.00073 34.5 0.0 14 43-56 45-58 (323)
372 2hz5_A Dynein light chain 2A, 20.3 23 0.0008 29.2 0.2 19 29-47 3-21 (106)
373 3rnm_E Lipoamide acyltransfera 20.3 27 0.00093 25.7 0.6 7 27-33 52-58 (58)
374 3m48_A General control protein 20.3 1.4E+02 0.0047 19.8 3.9 24 301-324 8-31 (33)
375 3t0j_A Impase II, inositol mon 20.1 25 0.00084 33.6 0.4 7 75-81 65-71 (283)
376 1op4_A Neural-cadherin; beta s 20.1 23 0.0008 31.3 0.2 11 28-38 4-14 (159)
377 2yh9_A Small protein A, BAME p 20.0 22 0.00075 27.8 0.0 6 27-32 82-87 (88)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-19 Score=144.06 Aligned_cols=63 Identities=30% Similarity=0.430 Sum_probs=59.4
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 228 NGCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 228 ~~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
..+.+|.|+.|+..|+.+||..|..++||+..+|.+||.+|||++.||+|||||||+|+|+++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 346788899999999999999999999999999999999999999999999999999999764
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-19 Score=143.09 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=59.2
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 228 NGCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 228 ~~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
.++.+|+|+.|+..|+.+||..|..++||+..+|++||.+|||++.||+|||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 346788899999999999999999999999999999999999999999999999999999754
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.76 E-value=3.5e-19 Score=141.40 Aligned_cols=67 Identities=31% Similarity=0.523 Sum_probs=61.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhhhhH
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDC 295 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~~~~ 295 (400)
.+.+|.|++|+..|+.+||..|..++||+..+|.+||.+|||++.||+|||||||+|+|+.+...++
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~ 73 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY 73 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccC
Confidence 4667889999999999999999999999999999999999999999999999999999987766543
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=3e-19 Score=141.99 Aligned_cols=62 Identities=27% Similarity=0.404 Sum_probs=59.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
.+.+|+|++|+.+|+.+||.+|..++||+..++++||.+|||++.||+|||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 46788899999999999999999999999999999999999999999999999999999865
No 5
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.75 E-value=2.3e-19 Score=136.57 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=53.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
+.+|.|+.|+..|+.+||..|..++||+..++.+||..+||++.||+|||||||+|+|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 5678899999999999999999999999999999999999999999999999999999864
No 6
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=5.3e-19 Score=142.03 Aligned_cols=60 Identities=10% Similarity=0.211 Sum_probs=57.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKE----HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~----~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
++.||+|+.|+.+|+.+||.+|+. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 467889999999999999999999 999999999999999999999999999999999985
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=4.5e-19 Score=135.52 Aligned_cols=60 Identities=30% Similarity=0.503 Sum_probs=55.7
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
+.+|+|++|+..|+.+||..|..++||+..++.+||.+|||++.||+|||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 467899999999999999999999999999999999999999999999999999999975
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=5.7e-19 Score=137.62 Aligned_cols=62 Identities=27% Similarity=0.486 Sum_probs=58.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
++.+|+|++|+..|+.+||..|..++||+..++.+||.+|||++.||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 35688899999999999999999999999999999999999999999999999999999754
No 9
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.2e-18 Score=139.28 Aligned_cols=63 Identities=24% Similarity=0.443 Sum_probs=59.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
+..+|+|++|+..|+.+||..|..++||+..+|.+||.+|||++.||+|||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 356888999999999999999999999999999999999999999999999999999997543
No 10
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.8e-19 Score=136.41 Aligned_cols=62 Identities=31% Similarity=0.491 Sum_probs=58.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
+..+|+|++|+.+|+.+||..|..++||+..++++||.+|||++.||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 35688899999999999999999999999999999999999999999999999999999754
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=9.1e-19 Score=136.19 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=58.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
++.+|+|++|+.+|+.+||..|..++||+..++.+||.+|||++.||+|||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 46688999999999999999999999999999999999999999999999999999999754
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-18 Score=138.96 Aligned_cols=64 Identities=23% Similarity=0.354 Sum_probs=59.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 292 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~ 292 (400)
.+.+|+|++|+.+|+.+||.+|..++||+..++.+||.+|||++.||+|||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999999986543
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.1e-18 Score=139.29 Aligned_cols=64 Identities=27% Similarity=0.448 Sum_probs=59.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 292 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~ 292 (400)
.+.+|+|++|+.+|+.+||..|..++||+..+|++||.+|||++.||+|||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 3568889999999999999999999999999999999999999999999999999999976543
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=136.23 Aligned_cols=62 Identities=29% Similarity=0.449 Sum_probs=58.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
++.+|+|++|+..|+.+||..|..++||+..++++||.+|||++.||+|||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 35688899999999999999999999999999999999999999999999999999999754
No 15
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=1.7e-18 Score=142.55 Aligned_cols=65 Identities=29% Similarity=0.478 Sum_probs=60.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 293 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~~ 293 (400)
.+.+|+|++|+..|+.+||..|..++||+..+|.+||.+|||++.||+|||||||+|+|++..+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 46678899999999999999999999999999999999999999999999999999999865544
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=134.63 Aligned_cols=61 Identities=38% Similarity=0.598 Sum_probs=57.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
..+|+|++|+.+|+.+||.+|..++||+..++.+||.+|||++.||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4577899999999999999999999999999999999999999999999999999999754
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=1.1e-18 Score=132.44 Aligned_cols=58 Identities=33% Similarity=0.590 Sum_probs=53.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
.+|.|+.|+..|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999996
No 18
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.72 E-value=1.8e-18 Score=139.14 Aligned_cols=59 Identities=14% Similarity=0.293 Sum_probs=56.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKE-----HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~-----~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
.++||+|+.||.+|+.+|| .|.. ++||+..+|++||.+|||+++||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4678899999999999999 7999 999999999999999999999999999999999985
No 19
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.72 E-value=2.3e-18 Score=137.82 Aligned_cols=63 Identities=32% Similarity=0.445 Sum_probs=58.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
++.+|+|++|+..|+.+||.+|..++||+..+|.+||.+|||++.||++||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 467888999999999999999999999999999999999999999999999999999997643
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-18 Score=135.25 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=58.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
.+.+|+|++|+.+|+.+||..|..++||+..++.+||.+|||++.||+|||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 35688999999999999999999999999999999999999999999999999999999754
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=2.1e-18 Score=133.79 Aligned_cols=62 Identities=32% Similarity=0.525 Sum_probs=58.5
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 292 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~ 292 (400)
.+|.|+.|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999999999999999999999999999976543
No 22
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.72 E-value=4e-18 Score=135.24 Aligned_cols=63 Identities=35% Similarity=0.532 Sum_probs=59.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
+..+|+|++|+..|+.+||..|..++||+..+|++||.+|||++.||+|||||||+|+|+...
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 356788999999999999999999999999999999999999999999999999999997654
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=2.1e-18 Score=129.31 Aligned_cols=57 Identities=30% Similarity=0.541 Sum_probs=55.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 232 TRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
+|+|+.|+..|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999986
No 24
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.72 E-value=8.2e-19 Score=135.97 Aligned_cols=64 Identities=28% Similarity=0.442 Sum_probs=59.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 292 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~ 292 (400)
|+.+|+|+.|+..|+.+||..|..++||+..++.+||..|||++.||+|||||||+|+|+++..
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 3568899999999999999999999999999999999999999999999999999999976543
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=1.6e-18 Score=133.46 Aligned_cols=61 Identities=28% Similarity=0.445 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
+.+|.|+.|+.+|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4678999999999999999999999999999999999999999999999999999999764
No 26
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=1.8e-18 Score=138.70 Aligned_cols=62 Identities=32% Similarity=0.583 Sum_probs=54.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
+..+|+|++|+..|+.+||..|..++||+..+|++||.+|||+++||+|||||||+|+|++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45688899999999999999999999999999999999999999999999999999999754
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=2.7e-18 Score=135.03 Aligned_cols=62 Identities=29% Similarity=0.461 Sum_probs=58.6
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
+.+|+|++|+..|+.+||..|..++||+..+|.+||..+||++.||+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 56888999999999999999999999999999999999999999999999999999997543
No 28
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.71 E-value=2.2e-18 Score=139.99 Aligned_cols=62 Identities=32% Similarity=0.587 Sum_probs=55.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
++.+|+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 46688999999999999999999999999999999999999999999999999999999753
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=3e-18 Score=129.60 Aligned_cols=58 Identities=33% Similarity=0.547 Sum_probs=55.4
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 232 TRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
+|.|+.|+..|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999974
No 30
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=2.2e-18 Score=133.83 Aligned_cols=61 Identities=31% Similarity=0.549 Sum_probs=57.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
++|+|++|+..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4788999999999999999999999999999999999999999999999999999997643
No 31
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-18 Score=134.02 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=59.6
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 228 NGCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 228 ~~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
.++.+|.|++|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|++..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3466888999999999999999999999999999999999999999999999999999997643
No 32
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-18 Score=138.28 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=58.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEH----TTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~----~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
++.+|+|+.|+.+|+.+||.+|..+ +||+..+|++||.+|||++.||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4678899999999999999999999 9999999999999999999999999999999999753
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=3.4e-18 Score=132.62 Aligned_cols=61 Identities=31% Similarity=0.547 Sum_probs=58.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
++|.|++|+..|+.+||..|..++||+..++.+||..|||++.+|+|||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4788999999999999999999999999999999999999999999999999999998654
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=4e-18 Score=127.21 Aligned_cols=57 Identities=35% Similarity=0.561 Sum_probs=54.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
++|.|++|+..|+.+||..|..++||+..++.+||.+|||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999986
No 35
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=5.5e-18 Score=132.71 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=56.0
Q ss_pred CCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 232 TRKKLRLSKQQSAFLEESFKE-HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
.++|++|+..|+.+||..|.. ++||+..+|.+||.+|||+++||+|||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 568899999999999999996 99999999999999999999999999999999999754
No 36
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=5.5e-18 Score=135.29 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 233 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 233 RkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
++|++||.+|+.+||+.|..++||+..+|++||..+||++.||+|||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999997654
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.70 E-value=3.9e-18 Score=131.68 Aligned_cols=62 Identities=31% Similarity=0.476 Sum_probs=58.3
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 292 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~ 292 (400)
+||+|++|+..|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|++...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 36889999999999999999999999999999999999999999999999999999986543
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=7.6e-18 Score=132.36 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKE-HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
.+++|++|+..|+.+||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 3578899999999999999995 99999999999999999999999999999999999754
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=4.3e-18 Score=128.85 Aligned_cols=59 Identities=42% Similarity=0.649 Sum_probs=48.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
++.+|+|++|+..|+.+||.+|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35678899999999999999999999999999999999999999999999999999986
No 40
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.69 E-value=5.7e-18 Score=139.90 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=57.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 292 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~ 292 (400)
...+|+|++|+..|+.+||..|..++||+..+|++||.+|||+++||+|||||||+|+|+.+++
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 3557889999999999999999999999999999999999999999999999999999986543
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=7.4e-18 Score=139.36 Aligned_cols=63 Identities=29% Similarity=0.530 Sum_probs=56.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
+..+|+|+.|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|++..
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 456788999999999999999999999999999999999999999999999999999998654
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.2e-18 Score=132.74 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=56.1
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 232 TRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
.++|++||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 356778999999999999999999999999999999999999999999999999997654
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.69 E-value=7e-18 Score=127.54 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=50.7
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 234 KKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 234 kRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
.|++||.+|+.+||..|..++||+..++.+||.++||++.||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999754
No 44
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.68 E-value=1.2e-17 Score=130.93 Aligned_cols=65 Identities=29% Similarity=0.402 Sum_probs=60.0
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhhhhH
Q 015772 231 STRKKLRLSKQQSAFLEESF---KEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDC 295 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~~~~ 295 (400)
.||+|++|+..|+.+||.+| ..++||+..++..||.++||++.||++||||||+|+|++......
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccccc
Confidence 36889999999999999999 899999999999999999999999999999999999987665553
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.1e-17 Score=125.03 Aligned_cols=54 Identities=35% Similarity=0.532 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 236 LRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
+.|+..|+.+||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999974
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.5e-17 Score=130.48 Aligned_cols=63 Identities=27% Similarity=0.311 Sum_probs=58.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKE---HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
++.+|+|++|+..|+.+||.+|.. ++||+..+|++||.++||++.||++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 356788999999999999999987 999999999999999999999999999999999997654
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=130.84 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=58.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
..++.|+.|+.+|+.+||..|..++||+..++++||.++||+++||+|||||||+|+|+.+.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 34678999999999999999999999999999999999999999999999999999997654
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-17 Score=131.96 Aligned_cols=61 Identities=25% Similarity=0.289 Sum_probs=56.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
..+.|++||.+|+.+||..|..++||+..+|++||.+|||+++||++||||||+|+|++..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 3456899999999999999999999999999999999999999999999999999997543
No 49
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=2.7e-17 Score=132.91 Aligned_cols=62 Identities=31% Similarity=0.426 Sum_probs=57.3
Q ss_pred CCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhhh
Q 015772 232 TRKKLRLSKQQSAFLEESF---KEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 293 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~~ 293 (400)
||+|++|+..|+.+||.+| ..++||+..+|.+||.++||++.||++||||||+|+|++....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6889999999999999999 8999999999999999999999999999999999999765443
No 50
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.6e-17 Score=135.60 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=59.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------CCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLN---------------LRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------LserQVqvWFQNRRaK~Krkq~ 291 (400)
.+.+|.|+.|+..|+.+||.+|+.++||+..+|++||.+|| |++.+|++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35688899999999999999999999999999999999999 9999999999999999997544
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=1.8e-17 Score=126.73 Aligned_cols=58 Identities=29% Similarity=0.395 Sum_probs=55.7
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESF---KEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F---~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
++|+|++|+..|+.+||.+| ..++||+..++.+||.++||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 47889999999999999999 89999999999999999999999999999999999986
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.9e-17 Score=135.81 Aligned_cols=57 Identities=25% Similarity=0.408 Sum_probs=53.4
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 235 KLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 235 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
..+||.+|+.+||+.|..++||+..+|++||..|||+++||+|||||||+|||++..
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 338999999999999999999999999999999999999999999999999997543
No 53
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.9e-17 Score=130.36 Aligned_cols=60 Identities=23% Similarity=0.353 Sum_probs=55.4
Q ss_pred CCCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 231 STRKKLRLSKQQSAFLEESF-KEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 231 ~rRkRtrfT~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
+.++|.+++.+|+.+||..| ..++||+..+|++||.+|||+++||+|||||||+|+|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 35667788999999999999 9999999999999999999999999999999999999643
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.64 E-value=5.6e-17 Score=122.44 Aligned_cols=56 Identities=29% Similarity=0.402 Sum_probs=53.5
Q ss_pred CCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 234 KKLRLSKQQSAFLEESFKE---HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 234 kRtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
+|++|+.+|+.+||.+|.. ++||+..++.+||.++||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4689999999999999999 9999999999999999999999999999999999963
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.64 E-value=9.1e-17 Score=129.55 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=57.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKE---HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
+.+|+|++|+.+|+.+|+.+|.. ++||+..+|++||.++||++.||++||||||+|+|+...
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 56778999999999999999987 599999999999999999999999999999999986543
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=6.8e-17 Score=143.17 Aligned_cols=62 Identities=32% Similarity=0.520 Sum_probs=55.7
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 228 NGCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 228 ~~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
.+++||+|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34667889999999999999999999999999999999999999999999999999999975
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-16 Score=130.28 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=53.6
Q ss_pred CCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 234 KKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 234 kRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
++.+||.+|+.+||..|..++||+..+|++||.+|||+++||+|||||||+|+|++..
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 4445999999999999999999999999999999999999999999999999987543
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=133.15 Aligned_cols=62 Identities=21% Similarity=0.427 Sum_probs=58.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc---------------------CCCccceeecccchhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQL---------------------NLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L---------------------gLserQVqvWFQNRRaK~K 287 (400)
++.||+|+.|+..|+.+||+.|..++||+..+|++||.+| .|++.+|+|||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4678899999999999999999999999999999999999 7999999999999999998
Q ss_pred hhh
Q 015772 288 LKQ 290 (400)
Q Consensus 288 rkq 290 (400)
+++
T Consensus 84 r~~ 86 (102)
T 2da6_A 84 FRQ 86 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 643
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.63 E-value=1.3e-16 Score=129.32 Aligned_cols=58 Identities=28% Similarity=0.395 Sum_probs=55.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 230 CSTRKKLRLSKQQSAFLEESFKE---HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 230 ~~rRkRtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
+++|+|++|+.+|+.+||.+|.. ++||+..+|.+||.++||++.||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45677999999999999999999 99999999999999999999999999999999998
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.62 E-value=8.3e-17 Score=144.46 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=54.8
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
.++||+|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3678889999999999999999999999999999999999999999999999999999974
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.62 E-value=1e-16 Score=129.00 Aligned_cols=60 Identities=27% Similarity=0.354 Sum_probs=54.7
Q ss_pred CCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 232 TRKKLRLSKQQSAFLEESFKE---HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
+++|++|+..|+.+||.+|.. ++||+..+|.+||.++||++.||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 456777999999999999999 999999999999999999999999999999999997543
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.62 E-value=9.7e-17 Score=144.87 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=52.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
+++||+|++|+..|+.+||+.|..++||+..+|.+||.++||+++||+|||||||+|+|++..
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 467888999999999999999999999999999999999999999999999999999998654
No 63
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.61 E-value=9.4e-17 Score=125.81 Aligned_cols=57 Identities=40% Similarity=0.575 Sum_probs=53.4
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhh
Q 015772 236 LRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTE 292 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~ 292 (400)
..++..|+.+||+.|..++||+..+|.+||.+|||+++||+|||||||+|+|+++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 357999999999999999999999999999999999999999999999999986643
No 64
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.61 E-value=2.5e-16 Score=139.94 Aligned_cols=60 Identities=27% Similarity=0.402 Sum_probs=57.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
+++||+|++|+..|+.+||.+|..++||+..+|.+||.++||+++||+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 467788999999999999999999999999999999999999999999999999999985
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.60 E-value=1.5e-16 Score=132.91 Aligned_cols=63 Identities=16% Similarity=0.387 Sum_probs=54.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------cC---CCccceeecccchhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQ------------------LN---LRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~------------------Lg---LserQVqvWFQNRRaK~K 287 (400)
.+.||.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 466888999999999999999999999999999999999 88 999999999999999998
Q ss_pred hhhh
Q 015772 288 LKQT 291 (400)
Q Consensus 288 rkq~ 291 (400)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 7654
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.8e-16 Score=121.16 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=51.0
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 235 KLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 235 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
+..++..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 3456789999999999999999999999999999999999999999999998863
No 67
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=4e-16 Score=121.83 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=55.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKE-HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~-~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
.++||.||.|+.+|+.+|+..|+. ++||+...|+.||.++||++++|+|||||||.-.|
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 367889999999999999999999 99999999999999999999999999999997655
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.59 E-value=3.5e-16 Score=121.54 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhh
Q 015772 239 SKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQ 290 (400)
Q Consensus 239 T~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq 290 (400)
+.+|+.+||+.|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999999999999999999999999999999999999643
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=2.5e-16 Score=121.80 Aligned_cols=50 Identities=32% Similarity=0.482 Sum_probs=46.7
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 240 KQQSAFLEESF-KEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 240 ~~Ql~~LE~~F-~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
..|+.+||+.| ..++||+..+|.+||++|||+++||+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 46899999999 579999999999999999999999999999999999863
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.57 E-value=6.6e-16 Score=138.02 Aligned_cols=61 Identities=30% Similarity=0.407 Sum_probs=57.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
+++||+|++|+..|+.+||..|..++||+..+|.+||.++||+++||+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4677889999999999999999999999999999999999999999999999999999963
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=9.1e-16 Score=137.67 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=54.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhh
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQT 291 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~ 291 (400)
.+.||+|+.|+..|+.+||..|..++||+..+|++||.+|||++.||+|||||||+|+|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 456889999999999999999999999999999999999999999999999999999997543
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.6e-15 Score=117.67 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhhhhH
Q 015772 236 LRLSKQQSAFLEESFK---EHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDC 295 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~---~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~~~~ 295 (400)
.+|+.+|+.+|+.+|. .++||+..+|++||.++||++.||++||||||+|+|+...+..+
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~ 65 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSN 65 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhc
Confidence 3799999999999999 99999999999999999999999999999999999987666554
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.41 E-value=2.3e-14 Score=132.84 Aligned_cols=61 Identities=16% Similarity=0.369 Sum_probs=53.9
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CCccceeecccchhhhh
Q 015772 228 NGCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLN---------------------LRPRQVEVWFQNRRART 286 (400)
Q Consensus 228 ~~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------LserQVqvWFQNRRaK~ 286 (400)
.++.||+|+.|+..|+.+||+.|..++||+..+|++||..+| |++.+|++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 346788899999999999999999999999999999999999 99999999999999998
Q ss_pred hh
Q 015772 287 KL 288 (400)
Q Consensus 287 Kr 288 (400)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.32 E-value=6.1e-13 Score=109.08 Aligned_cols=54 Identities=28% Similarity=0.332 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhh
Q 015772 236 LRLSKQQSAFLEESFKE---HTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 289 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~---~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krk 289 (400)
..|+.+++.+|+.+|.. ++||+..+|++||.++||++.||++||||||.|+|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 46899999999999987 9999999999999999999999999999999999864
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=9.6e-13 Score=103.20 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhh
Q 015772 240 KQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRART 286 (400)
Q Consensus 240 ~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~ 286 (400)
++|+.+|+..|..+++|+..++..||..+||++++|||||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 47899999999999999999999999999999999999999999743
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.27 E-value=9.3e-13 Score=124.03 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=53.8
Q ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CCccceeecccchhhhh
Q 015772 228 NGCSTRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLN---------------------LRPRQVEVWFQNRRART 286 (400)
Q Consensus 228 ~~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg---------------------LserQVqvWFQNRRaK~ 286 (400)
..+.||.|+.|+..|+.+||+.|..++||+..+|++||..+| |++.||++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 346788899999999999999999999999999999999988 89999999999999875
Q ss_pred h
Q 015772 287 K 287 (400)
Q Consensus 287 K 287 (400)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.22 E-value=1.2e-12 Score=129.30 Aligned_cols=56 Identities=41% Similarity=0.661 Sum_probs=53.1
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 232 TRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
++.++.|+..|+.+||+.|..++||+..+|++||+++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45577899999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=8.2e-10 Score=76.49 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=21.5
Q ss_pred cceeecccchhhhhhhhhhhhhHHHH
Q 015772 273 RQVEVWFQNRRARTKLKQTEVDCEYL 298 (400)
Q Consensus 273 rQVqvWFQNRRaK~Krkq~~~~~e~l 298 (400)
+||+|||||||+|||+++.+...+.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~ 26 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDII 26 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHH
Confidence 59999999999999998777665443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.33 E-value=0.043 Score=42.80 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccc
Q 015772 242 QSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQN 281 (400)
Q Consensus 242 Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQN 281 (400)
-.+.|++.|...+.+.......|..+..|+..||+-||-.
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3579999999999999999999999999999999999954
No 80
>3oka_C N-terminal His-affinity TAG; GT-B fold, alpha-mannosyltransferase, GDP-MAN binding, trans; HET: GDD; 2.20A {Escherichia coli}
Probab=81.32 E-value=0.41 Score=28.25 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=4.3
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||++
T Consensus 5 hhhhhhhhss 14 (21)
T 3oka_C 5 HHHHHHHHSS 14 (26)
T ss_pred cccccccccc
Confidence 3444444443
No 81
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=80.60 E-value=0.33 Score=47.34 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=0.4
Q ss_pred CcccccccccchHHHHHHHHhh
Q 015772 26 DEDHHHHEDRQTETAAAAAARL 47 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ 47 (400)
++||||||||++-..+-+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (406)
T 1ydx_A 3 HHHHHHHHHHSSGHIDDDDKHM 24 (406)
T ss_dssp ---------------------C
T ss_pred ccccccccccccCCcCcccccc
Confidence 3455566666665555455444
No 82
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=80.06 E-value=0.25 Score=46.62 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=1.5
Q ss_pred CcccccccccchHHHHHHHHhh
Q 015772 26 DEDHHHHEDRQTETAAAAAARL 47 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ 47 (400)
++||||||||++++..-.-.+|
T Consensus 3 ~~~~~~~~~~~~~~~~l~g~~v 24 (286)
T 1jr2_A 3 HHHHHHHHHHSSGHIEGRHMKV 24 (286)
T ss_dssp -------------------CEE
T ss_pred cccccccccccccchhhcCCEE
Confidence 4677777788888766655554
No 83
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}
Probab=79.69 E-value=0.77 Score=36.76 Aligned_cols=27 Identities=30% Similarity=0.613 Sum_probs=10.7
Q ss_pred CCCCccccCCCCCCCCCCcCccccccc
Q 015772 7 PTSSVREDGDDDNRKPTQEDEDHHHHE 33 (400)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (400)
|.+-|..-........-.+||||||||
T Consensus 66 PsnyV~~~~~~~~~~~~~~~~~~~~~~ 92 (92)
T 2o2o_A 66 PSNFIKELSGESDELGISQDEHHHHHH 92 (92)
T ss_dssp CSSSEECCSSCSSTTTTCC--------
T ss_pred ehHHEEECCCCCcccccchhhhccccC
Confidence 667776655444444444566666554
No 84
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=78.66 E-value=0.41 Score=47.78 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=0.0
Q ss_pred cccccccccc
Q 015772 27 EDHHHHEDRQ 36 (400)
Q Consensus 27 ~~~~~~~~~~ 36 (400)
+||||||||+
T Consensus 4 ~~~~~~~~~~ 13 (357)
T 4g1u_A 4 HHHHHHHHHS 13 (357)
T ss_dssp ----------
T ss_pred cccccccccC
Confidence 3444444443
No 85
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=77.85 E-value=0.41 Score=43.33 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=0.0
Q ss_pred CcccccccccchHHHHHHH
Q 015772 26 DEDHHHHEDRQTETAAAAA 44 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~ 44 (400)
++||||||||++++.-...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (174)
T 2oar_A 3 HHHHHHHHHHSSGHIDDDD 21 (174)
T ss_dssp -------------------
T ss_pred cccccccccccccchHHHH
Confidence 4567777777777765443
No 86
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=76.27 E-value=0.53 Score=43.34 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=0.0
Q ss_pred cccccccccc
Q 015772 27 EDHHHHEDRQ 36 (400)
Q Consensus 27 ~~~~~~~~~~ 36 (400)
+||||||||+
T Consensus 4 ~~~~~~~~~~ 13 (291)
T 2yjp_A 4 HHHHHHHHHS 13 (291)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444444444
No 87
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=76.14 E-value=0.67 Score=44.31 Aligned_cols=21 Identities=0% Similarity=-0.015 Sum_probs=12.7
Q ss_pred hhcChhhhhccCCCccccccc
Q 015772 46 RLVDSAEIRRCSTPTATAETA 66 (400)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~ 66 (400)
+|-++.|+.+-.+|+--.++.
T Consensus 25 ~i~~~~~ie~~g~pvlg~iP~ 45 (299)
T 3cio_A 25 GVEAPEQLEEHGISVYATIPM 45 (299)
T ss_dssp CCCCTHHHHTTTCCEEEEEEC
T ss_pred CcCCHHHHHhCCCCEEEEecC
Confidence 455567776557777655543
No 88
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=75.97 E-value=0.54 Score=37.13 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=30.2
Q ss_pred ccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCCccceeecccc
Q 015772 236 LRLSKQQSAFLEESFKEH-TTLTPKQKLALAKQLNLRPRQVEVWFQN 281 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~~-~yPs~~~R~eLA~~LgLserQVqvWFQN 281 (400)
..|+.++....-..+... .+ ...++|+++|++...|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 468888776555555332 22 3678999999999999999753
No 89
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.96 E-value=6.4 Score=31.67 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=19.9
Q ss_pred hhhhhhhhhhhh----HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 015772 283 RARTKLKQTEVD----CEYLKRCCETLTEENRRLQKELQELRAL 322 (400)
Q Consensus 283 RaK~Krkq~~~~----~e~l~~~~e~L~~En~~l~~e~~~l~al 322 (400)
|.|.|+++.... .+.|...+..|..+...|..|+..|+.|
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554443333 2445555555555555555555555544
No 90
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=74.82 E-value=0.61 Score=44.51 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 10 ~~~~~~~~ 17 (256)
T 3llq_A 10 HHHHHHHH 17 (256)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 91
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=74.01 E-value=0.65 Score=44.99 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=5.4
Q ss_pred cChhhhhccCCCcccc
Q 015772 48 VDSAEIRRCSTPTATA 63 (400)
Q Consensus 48 ~~~~~~~~~~~~~~~~ 63 (400)
+|-...--|+-+..--
T Consensus 17 ~~~~~~~aC~N~ld~~ 32 (379)
T 3uau_A 17 IDDDDKHMCGNSIDEK 32 (379)
T ss_dssp -------CCCCCSCHH
T ss_pred cchhhhhhhCCcccHH
Confidence 4555566677665443
No 92
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=68.47 E-value=1 Score=39.59 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=0.0
Q ss_pred cccccccccchHH
Q 015772 27 EDHHHHEDRQTET 39 (400)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (400)
.||||||||++-|
T Consensus 4 ~~~~~~~~~~~~t 16 (156)
T 1svj_A 4 HHHHHHHHHSSGH 16 (156)
T ss_dssp -------------
T ss_pred ccccccccCCCCc
Confidence 4555566666554
No 93
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=68.36 E-value=1 Score=43.00 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCCCcCcccccccccchHHHHHHHH
Q 015772 20 RKPTQEDEDHHHHEDRQTETAAAAAA 45 (400)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (400)
|.-|..++||||||||++--...++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (254)
T 2bu3_A 7 RRYTMGHHHHHHHHHHSSGHIEGRHM 32 (254)
T ss_dssp --------------------------
T ss_pred ehhccccccccccccccccchhhhhh
Confidence 45566777788888888776666554
No 94
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=67.54 E-value=1.1 Score=41.05 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=0.0
Q ss_pred CcccccccccchHHHHHHHHh
Q 015772 26 DEDHHHHEDRQTETAAAAAAR 46 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~ 46 (400)
++|||||||||+--+..+++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l 23 (283)
T 2yln_A 3 HHHHHHHHHHSSGHIDDDDKH 23 (283)
T ss_dssp ---------------------
T ss_pred ccccccccccccccHHHHHHH
Confidence 355666666666655555443
No 95
>2lwx_A Zuotin; J-protein, molecular chaperone, pleiotropic drug resistance, chaperone; NMR {Saccharomyces cerevisiae}
Probab=67.04 E-value=0.76 Score=38.46 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=0.0
Q ss_pred cccccccccchHHH
Q 015772 27 EDHHHHEDRQTETA 40 (400)
Q Consensus 27 ~~~~~~~~~~~~~~ 40 (400)
.||||||||.+|.+
T Consensus 4 ~~~~~~~~~~~~~~ 17 (108)
T 2lwx_A 4 SHHHHHHHHGSENL 17 (108)
T ss_dssp --------------
T ss_pred cccccccccCchhH
Confidence 46777777777765
No 96
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=67.01 E-value=4 Score=33.41 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=38.4
Q ss_pred CCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhh
Q 015772 233 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRA 284 (400)
Q Consensus 233 RkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRa 284 (400)
++|.+||.++...+-..+..+.... ..+||+.+|++...|..|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 3577899999888777775555544 346899999999999999887655
No 97
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=66.99 E-value=1.2 Score=44.17 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 3 ~~~~~~~~~~~ 13 (332)
T 2es4_D 3 HHHHHHHHHSS 13 (332)
T ss_dssp -----------
T ss_pred CcccccccccC
Confidence 34444444443
No 98
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=66.63 E-value=1.2 Score=43.27 Aligned_cols=12 Identities=50% Similarity=0.927 Sum_probs=0.0
Q ss_pred ccccccccchHH
Q 015772 28 DHHHHEDRQTET 39 (400)
Q Consensus 28 ~~~~~~~~~~~~ 39 (400)
||||||||-+||
T Consensus 3 ~~~~~~~~~~~~ 14 (290)
T 4akr_B 3 HHHHHHHHTSET 14 (290)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 566666666666
No 99
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=66.39 E-value=11 Score=29.66 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=19.3
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 015772 282 RRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR 320 (400)
Q Consensus 282 RRaK~Krkq~~~~~e~l~~~~e~L~~En~~l~~e~~~l~ 320 (400)
+|.|.|+++.... +......|..||..|+.++.+|.
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544443 23345556666666666665554
No 100
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=65.04 E-value=2.8 Score=30.19 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=31.2
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeeccc
Q 015772 235 KLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQ 280 (400)
Q Consensus 235 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQ 280 (400)
|..|+.+....+...+.. .........++|+++|+....|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456888887766444443 332122367899999999999999964
No 101
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=63.90 E-value=1.4 Score=43.40 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=0.0
Q ss_pred cccccccccc
Q 015772 27 EDHHHHEDRQ 36 (400)
Q Consensus 27 ~~~~~~~~~~ 36 (400)
+||||||||+
T Consensus 4 ~~~~~~~~~~ 13 (332)
T 4axs_A 4 HHHHHHHHHS 13 (332)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444444444
No 102
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=63.78 E-value=1.5 Score=43.12 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=0.0
Q ss_pred ccccccccchHH
Q 015772 28 DHHHHEDRQTET 39 (400)
Q Consensus 28 ~~~~~~~~~~~~ 39 (400)
||||||||.-|.
T Consensus 3 hhhhhhhhhgen 14 (564)
T 4faj_A 3 HHHHHHHHHGEN 14 (564)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 344444444443
No 103
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=62.46 E-value=1.6 Score=40.15 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 2 ~~~~~~~~ 9 (198)
T 4dve_A 2 HHHHHHHH 9 (198)
T ss_dssp --------
T ss_pred CcchhhHH
Confidence 34444444
No 104
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=62.08 E-value=1.6 Score=42.90 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=0.0
Q ss_pred cccccccccc
Q 015772 27 EDHHHHEDRQ 36 (400)
Q Consensus 27 ~~~~~~~~~~ 36 (400)
+||||||||+
T Consensus 4 ~~~~~~~~~~ 13 (315)
T 1uoz_A 4 HHHHHHHHHS 13 (315)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444444444
No 105
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=60.82 E-value=1.8 Score=39.41 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
+||||||||++-
T Consensus 4 ~~~~~~~~~~~~ 15 (236)
T 2px7_A 4 HHHHHHHHHSSG 15 (236)
T ss_dssp ------------
T ss_pred cccccccccccC
Confidence 344455555543
No 106
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=60.35 E-value=1.8 Score=39.38 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=0.0
Q ss_pred cccccccccchHHH
Q 015772 27 EDHHHHEDRQTETA 40 (400)
Q Consensus 27 ~~~~~~~~~~~~~~ 40 (400)
+||||||||++--.
T Consensus 4 ~~~~~~~~~~~~~~ 17 (221)
T 2c0d_A 4 HHHHHHHHHSSGHI 17 (221)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 44555555555433
No 107
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens}
Probab=60.35 E-value=1.8 Score=45.53 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (560)
T 3odm_A 4 HHHHHHHHHSS 14 (560)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444444444
No 108
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=60.26 E-value=1.8 Score=40.53 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (288)
T 1jxh_A 4 HHHHHHHHHSS 14 (288)
T ss_dssp -----------
T ss_pred ccccccccccC
Confidence 34444444443
No 109
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 2ol2_A*
Probab=60.22 E-value=1.8 Score=43.13 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (395)
T 3b9f_I 4 HHHHHHHHHSS 14 (395)
T ss_dssp -----------
T ss_pred cccccccccCC
Confidence 44555555544
No 110
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=60.05 E-value=1.9 Score=40.16 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (223)
T 3dfz_A 4 HHHHHHHHHSS 14 (223)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34445555544
No 111
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=59.64 E-value=1.9 Score=43.53 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=0.0
Q ss_pred cccccccccchHH
Q 015772 27 EDHHHHEDRQTET 39 (400)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (400)
+||||||||++-.
T Consensus 4 ~~~~~~~~~~~~~ 16 (389)
T 3a5i_A 4 HHHHHHHHHSSGH 16 (389)
T ss_dssp -------------
T ss_pred cccccccccccCC
Confidence 4455555555443
No 112
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=59.64 E-value=1.9 Score=44.15 Aligned_cols=20 Identities=0% Similarity=-0.140 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHcCCCccc
Q 015772 255 TLTPKQKLALAKQLNLRPRQ 274 (400)
Q Consensus 255 yPs~~~R~eLA~~LgLserQ 274 (400)
|+.-.+...+-..|||....
T Consensus 268 ~~g~~~~~~~L~~lGl~~~~ 287 (467)
T 2axq_A 268 YQGFPEFVKALVDMGMLKDD 287 (467)
T ss_dssp ETTHHHHHHHHHHTTTTCCS
T ss_pred eCCHHHHHHHHHHcCCCCCC
Confidence 67777777777788876544
No 113
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=58.65 E-value=2 Score=41.19 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=8.3
Q ss_pred hhhhHHHHHHhhhhhHH
Q 015772 291 TEVDCEYLKRCCETLTE 307 (400)
Q Consensus 291 ~~~~~e~l~~~~e~L~~ 307 (400)
++-+.++.-|+++.|..
T Consensus 183 kEpf~dfVdRl~kalra 199 (262)
T 1d1d_A 183 SESFVDFANRLIKAVEG 199 (262)
T ss_dssp SSCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 34444555555555544
No 114
>3nk4_C ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_C*
Probab=58.61 E-value=2.8 Score=26.67 Aligned_cols=6 Identities=83% Similarity=1.614 Sum_probs=2.8
Q ss_pred cccccc
Q 015772 28 DHHHHE 33 (400)
Q Consensus 28 ~~~~~~ 33 (400)
||||||
T Consensus 24 dhhhhh 29 (30)
T 3nk4_C 24 DHHHHH 29 (30)
T ss_dssp CTTCCC
T ss_pred cccccC
Confidence 444444
No 115
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=58.40 E-value=2.1 Score=41.20 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=5.3
Q ss_pred HHHcCCCccce
Q 015772 265 AKQLNLRPRQV 275 (400)
Q Consensus 265 A~~LgLserQV 275 (400)
|...|++---|
T Consensus 315 al~~G~P~v~~ 325 (398)
T 3oti_A 315 AIDAGIPQLLA 325 (398)
T ss_dssp HHHHTCCEEEC
T ss_pred HHHhCCCEEEc
Confidence 44456554333
No 116
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=57.18 E-value=7.3 Score=30.17 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecc
Q 015772 232 TRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWF 279 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWF 279 (400)
++.+..|+.++....-..+.. .. ...+||+++|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHH
Confidence 445668898886555555642 22 35688999999999999996
No 117
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=56.85 E-value=2.3 Score=43.88 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=0.0
Q ss_pred CcccccccccchHHHHHH
Q 015772 26 DEDHHHHEDRQTETAAAA 43 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (400)
++||||||||++-.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (580)
T 3etc_A 3 HHHHHHHHHHSSGHIDDD 20 (580)
T ss_dssp ------------------
T ss_pred ccccccccccccCCcCch
Confidence 345555566665444333
No 118
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=56.54 E-value=2.3 Score=42.98 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCccceeecccch
Q 015772 261 KLALAKQLNLRPRQVEVWFQNR 282 (400)
Q Consensus 261 R~eLA~~LgLserQVqvWFQNR 282 (400)
-.++|..||.....|.+|=.|.
T Consensus 230 A~~~a~~lGa~~~~V~v~D~~~ 251 (394)
T 2qrj_A 230 AIDLLHKVGIPDANILKWDIKE 251 (394)
T ss_dssp HHHHHHHTTCCGGGEEEECHHH
T ss_pred HHHHHHhCCCCcCceEEeeccc
Confidence 3456777777666888885443
No 119
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=55.65 E-value=3.9 Score=25.47 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=5.1
Q ss_pred cCcccccccc
Q 015772 25 EDEDHHHHED 34 (400)
Q Consensus 25 ~~~~~~~~~~ 34 (400)
..|.||||||
T Consensus 18 tgekhhhhhh 27 (27)
T 2hzs_I 18 TGEKHHHHHH 27 (27)
T ss_dssp HCCCCSSCCC
T ss_pred cccccccccC
Confidence 3455555553
No 120
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=55.63 E-value=3.8 Score=30.31 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=4.0
Q ss_pred CCCCCCcCccccccc
Q 015772 19 NRKPTQEDEDHHHHE 33 (400)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (400)
++++..+|-.|||||
T Consensus 39 ~~~~~~~~~~~~~~~ 53 (54)
T 2l8s_A 39 PLKKKMEKLEHHHHH 53 (54)
T ss_dssp CCSCCCCC-------
T ss_pred CCcchhhHHhhhccC
Confidence 445555554444444
No 121
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=55.23 E-value=2.5 Score=42.70 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
+||||||||.|.
T Consensus 3 ~~~~~~~~~~~~ 14 (500)
T 3tcm_A 3 HHHHHHHHHGTD 14 (500)
T ss_dssp ------------
T ss_pred ccccccccCCCC
Confidence 455555555554
No 122
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=54.79 E-value=3.7 Score=38.43 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=4.8
Q ss_pred HHHHhhcCC
Q 015772 247 EESFKEHTT 255 (400)
Q Consensus 247 E~~F~~~~y 255 (400)
+.+|+++++
T Consensus 138 ~df~~~h~~ 146 (235)
T 1qwz_A 138 QSFYEKHKI 146 (235)
T ss_dssp HHHHHHCCE
T ss_pred chhhhcCCE
Confidence 445665553
No 123
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=54.78 E-value=2.3 Score=38.86 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 2 ~~~~~~~~ 9 (192)
T 3rlb_A 2 HHHHHHHH 9 (192)
T ss_dssp --------
T ss_pred Cccchhhh
Confidence 34444444
No 124
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=54.74 E-value=2.6 Score=40.98 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (374)
T 2xci_A 4 HHHHHHHHHSS 14 (374)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444555544
No 125
>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C*
Probab=54.15 E-value=2.7 Score=40.45 Aligned_cols=8 Identities=13% Similarity=0.314 Sum_probs=0.0
Q ss_pred cChhhhhc
Q 015772 48 VDSAEIRR 55 (400)
Q Consensus 48 ~~~~~~~~ 55 (400)
+|-.+-||
T Consensus 17 ~~~~~~rr 24 (268)
T 3k9f_C 17 IDDDDKHM 24 (268)
T ss_dssp --------
T ss_pred CCchhhhh
Confidence 44555555
No 126
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=53.87 E-value=3.8 Score=27.41 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=29.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRR 283 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRR 283 (400)
.++.++...+...+... . ...+||+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35555655555555433 2 356899999999999999986543
No 127
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=53.35 E-value=2.8 Score=39.90 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=0.0
Q ss_pred cCccccccccc
Q 015772 25 EDEDHHHHEDR 35 (400)
Q Consensus 25 ~~~~~~~~~~~ 35 (400)
+++|||||||.
T Consensus 10 ~~~~~~~~~~~ 20 (256)
T 3llq_A 10 HHHHHHHHHHE 20 (256)
T ss_dssp -----------
T ss_pred cccccccccch
Confidence 34555555554
No 128
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=53.34 E-value=2.8 Score=37.27 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=0.0
Q ss_pred cccccccccchHHH
Q 015772 27 EDHHHHEDRQTETA 40 (400)
Q Consensus 27 ~~~~~~~~~~~~~~ 40 (400)
+||||||||++--.
T Consensus 4 ~~~~~~~~~~~~~~ 17 (185)
T 4b1m_A 4 HHHHHHHHHSSGHI 17 (185)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 34444555554433
No 129
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=53.32 E-value=2.8 Score=44.31 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (591)
T 3b0g_A 4 HHHHHHHHHSS 14 (591)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44455555544
No 130
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=53.19 E-value=3 Score=27.08 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=0.9
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
-|||||||
T Consensus 26 lehhhhhh 33 (33)
T 3c0t_B 26 LEHHHHHH 33 (33)
T ss_dssp GC------
T ss_pred HHhhcccC
Confidence 45555553
No 131
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=52.16 E-value=3 Score=38.62 Aligned_cols=15 Identities=13% Similarity=-0.122 Sum_probs=0.0
Q ss_pred hhhhhccCCCccccc
Q 015772 50 SAEIRRCSTPTATAE 64 (400)
Q Consensus 50 ~~~~~~~~~~~~~~~ 64 (400)
+.+++++++-+-...
T Consensus 16 ~~~~~~~~~~~~~~~ 30 (285)
T 2c07_A 16 HIEGRHMKLEFMNLL 30 (285)
T ss_dssp ---------------
T ss_pred ccccccccchhhccC
Confidence 456667666554433
No 132
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=51.94 E-value=3 Score=41.15 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
+||||||||++-
T Consensus 4 ~~~~~~~~~~~~ 15 (327)
T 1k8w_A 4 HHHHHHHHHSSG 15 (327)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 344444444443
No 133
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=51.72 E-value=3.3 Score=39.14 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=17.3
Q ss_pred cccccccccchHHHHHHHHh-hcChhhh
Q 015772 27 EDHHHHEDRQTETAAAAAAR-LVDSAEI 53 (400)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 53 (400)
+|||||-|..-..+|++|+. +|..-++
T Consensus 3 ~~~~~~~~~~K~~iA~~Aa~~~I~dg~~ 30 (244)
T 2f8m_A 3 HHHHHHMDSLKKIVAYKAVDEYVQSNMT 30 (244)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCCTTCE
T ss_pred cccccchHHHHHHHHHHHHHHhCCCCCE
Confidence 34555556666777888888 8876654
No 134
>4gsx_A Envelope protein E; viral fusion protein, viral protein; HET: NAG; 1.90A {Dengue virus 1} PDB: 4gt0_A* 3g7t_A 3j05_A 1uzg_A*
Probab=51.51 E-value=3.1 Score=42.42 Aligned_cols=15 Identities=33% Similarity=0.674 Sum_probs=0.0
Q ss_pred ccccccccchHHHHH
Q 015772 28 DHHHHEDRQTETAAA 42 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~ 42 (400)
||||||||.++||-+
T Consensus 2 ~~~~~~~~~~~~ays 16 (427)
T 4gsx_A 2 HHHHHHHHGSSTSNG 16 (427)
T ss_dssp ---------------
T ss_pred CccccccCCccchhh
Confidence 677788888888653
No 135
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A
Probab=51.28 E-value=3.2 Score=41.52 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
+||||||||++-
T Consensus 3 ~~~~~~~~~~~~ 14 (358)
T 3tut_A 3 HHHHHHHHHSSG 14 (358)
T ss_dssp ------------
T ss_pred cccccccccccC
Confidence 344445555443
No 136
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=49.60 E-value=3.5 Score=41.16 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHh
Q 015772 238 LSKQQSAFLEESFK 251 (400)
Q Consensus 238 fT~~Ql~~LE~~F~ 251 (400)
++.+++...-..|.
T Consensus 140 ~~~~~i~~~l~~f~ 153 (357)
T 2apo_A 140 ASEEDILRVFKEFT 153 (357)
T ss_dssp CCHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhCc
Confidence 45666665555564
No 137
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=49.29 E-value=3.5 Score=40.71 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=0.0
Q ss_pred cccccccchHHH
Q 015772 29 HHHHEDRQTETA 40 (400)
Q Consensus 29 ~~~~~~~~~~~~ 40 (400)
|||||||++|.+
T Consensus 3 ~~~~~~~~~~~~ 14 (386)
T 3e5n_A 3 HHHHHHHSSENL 14 (386)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 666666666644
No 138
>3pnr_B Pbicp-C; immunoglobulin fold, hydrolase-hydrolase inhibitor complex; 2.60A {Plasmodium berghei}
Probab=48.94 E-value=3.6 Score=36.65 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=0.0
Q ss_pred cccccccccchHH
Q 015772 27 EDHHHHEDRQTET 39 (400)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (400)
+||||||||++--
T Consensus 4 ~~~~~~~~~~~~~ 16 (187)
T 3pnr_B 4 HHHHHHHHHSSGH 16 (187)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3444555555443
No 139
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=48.89 E-value=3.6 Score=36.57 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=10.8
Q ss_pred cCCCCHHHHHHHHHHc
Q 015772 253 HTTLTPKQKLALAKQL 268 (400)
Q Consensus 253 ~~yPs~~~R~eLA~~L 268 (400)
+.+.+..+...+...+
T Consensus 143 dG~Is~~El~~~l~~~ 158 (214)
T 2l4h_A 143 DGTLNREDLSRLVNCL 158 (214)
T ss_dssp SSCBCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH
Confidence 4577777777766655
No 140
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=48.71 E-value=8.6 Score=25.02 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccc
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQN 281 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQN 281 (400)
.++..+...+...|... + ...+||+.+|++...|..|+..
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777765555555432 2 2668899999999999999754
No 141
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=48.03 E-value=3.8 Score=42.38 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 5 ~~~~~~~~ 12 (514)
T 2r9r_B 5 HHHHHHHH 12 (514)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33333333
No 142
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=47.92 E-value=3.8 Score=35.68 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||++
T Consensus 5 ~~~~~~~~~~ 14 (145)
T 2d2a_A 5 HHHHHHHHSS 14 (145)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444444443
No 143
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=47.51 E-value=3.9 Score=41.26 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
+||||||||++-
T Consensus 4 ~~~~~~~~~~~~ 15 (433)
T 4e4j_A 4 HHHHHHHHHSSG 15 (433)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 445555555543
No 144
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=47.35 E-value=4 Score=45.91 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
+||||||||++-
T Consensus 4 ~~~~~~~~~~~~ 15 (993)
T 2ygr_A 4 HHHHHHHHHSSG 15 (993)
T ss_dssp ------------
T ss_pred cccccccccccC
Confidence 445555555543
No 145
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=47.31 E-value=4 Score=31.95 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=0.4
Q ss_pred CCcCcccccccc
Q 015772 23 TQEDEDHHHHED 34 (400)
Q Consensus 23 ~~~~~~~~~~~~ 34 (400)
...+||||||||
T Consensus 76 ~~~~~~~~~~~~ 87 (87)
T 1ttz_A 76 PHALEHHHHHHH 87 (87)
T ss_dssp C-----------
T ss_pred HHHHhhhhccCC
Confidence 456677777664
No 146
>2lie_A CCL2 lectin; sugar binding protein; NMR {Coprinopsis cinerea} PDB: 2liq_A*
Probab=52.58 E-value=4.1 Score=35.46 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=4.9
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||+-
T Consensus 3 ~~~~~~~~~~ 12 (153)
T 2lie_A 3 HHHHHHHHSG 12 (153)
Confidence 4555555543
No 147
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=46.78 E-value=66 Score=25.18 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=27.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Q 015772 293 VDCEYLKRCCETLTEENRRLQKELQELRALKS 324 (400)
Q Consensus 293 ~~~e~l~~~~e~L~~En~~l~~e~~~l~al~~ 324 (400)
.+.+.|+.....|.+.|.+|+.|+.-|+.+..
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45678888899999999999999998887744
No 148
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=46.74 E-value=9.9 Score=29.42 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
.++..|..+|...|-.. ..-.+||..||++...|+.+...-|.|.|
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37777777777655322 23678999999999999988765555444
No 149
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A
Probab=46.27 E-value=4.2 Score=40.88 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=0.0
Q ss_pred cceeecccch
Q 015772 273 RQVEVWFQNR 282 (400)
Q Consensus 273 rQVqvWFQNR 282 (400)
..|-+|.-+.
T Consensus 216 ~~iyvW~G~~ 225 (398)
T 3fg7_A 216 SCCYLWCGKG 225 (398)
T ss_dssp ----------
T ss_pred CeEEEEeCCC
Confidence 4577777544
No 150
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=46.10 E-value=4.3 Score=40.53 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||++
T Consensus 7 ~~~~~~~~~~ 16 (371)
T 3tla_A 7 HHHHHHHHSS 16 (371)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3333444443
No 151
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=45.66 E-value=4.4 Score=39.65 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcC-------CCCHHHHHHHHHHcCCCccceeecc
Q 015772 240 KQQSAFLEESFKEHT-------TLTPKQKLALAKQLNLRPRQVEVWF 279 (400)
Q Consensus 240 ~~Ql~~LE~~F~~~~-------yPs~~~R~eLA~~LgLserQVqvWF 279 (400)
.+....|++..++.. .-+..+.++|....++.+..+|+-|
T Consensus 169 ~e~~~aLe~l~~~GkIr~iGvSn~~~~~l~~~~~~~~i~p~v~Q~e~ 215 (344)
T 2bgs_A 169 EGVWKEMENLVKDGLVKDIGVCNYTVTKLNRLLRSAKIPPAVCQMEM 215 (344)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEESCCHHHHHHHHHHCSSCCSEEEEEC
T ss_pred HHHHHHHHHHHHcCCccEEEEecCCHHHHHHHHHhcCCCceeeeccc
Confidence 345566666665422 2345555666555555455555443
No 152
>3ggh_A K88 fimbrial protein AD; immunoglobulin like fold, fimbrium, plasmid, cell adhesion; 1.64A {Escherichia coli} PDB: 3gea_A 3hlr_A
Probab=45.58 E-value=5.5 Score=38.44 Aligned_cols=9 Identities=67% Similarity=1.195 Sum_probs=6.3
Q ss_pred ccccccccc
Q 015772 28 DHHHHEDRQ 36 (400)
Q Consensus 28 ~~~~~~~~~ 36 (400)
.||||||||
T Consensus 5 ~~~~~~~~~ 13 (275)
T 3ggh_A 5 GHHHHHHRQ 13 (275)
T ss_dssp CCCCSSSCC
T ss_pred ccccccccc
Confidence 467777776
No 153
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=45.27 E-value=4.3 Score=43.53 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=0.0
Q ss_pred ccccccccc
Q 015772 28 DHHHHEDRQ 36 (400)
Q Consensus 28 ~~~~~~~~~ 36 (400)
||||||||+
T Consensus 5 ~~~~~~~~~ 13 (651)
T 3ces_A 5 HHHHHHHHS 13 (651)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 555555554
No 154
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=44.78 E-value=4.6 Score=40.13 Aligned_cols=10 Identities=40% Similarity=0.830 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||+.
T Consensus 4 ~~~~~~~~~~ 13 (380)
T 3c3r_A 4 HHHHHHHHSG 13 (380)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444444443
No 155
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; flavoenzyme, prodh, beta-alpha-barrel inhibitor, inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus thermophilus} PDB: 2g37_A*
Probab=44.54 E-value=4.7 Score=39.67 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=0.0
Q ss_pred ccccccccchH
Q 015772 28 DHHHHEDRQTE 38 (400)
Q Consensus 28 ~~~~~~~~~~~ 38 (400)
||||||||-+|
T Consensus 3 ~~~~~~~~~~~ 13 (327)
T 2ekg_A 3 HHHHHHHHASE 13 (327)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 45555555544
No 156
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type lysozyme-like structure, lytic transglycosylase,; HET: NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 4hjy_A* 4hjz_A* 3t36_A 3t4i_A* 4hjv_A* 2y8p_A
Probab=43.99 E-value=4.8 Score=36.77 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=17.9
Q ss_pred CCHHHHHHHH-HHcCCCccceeecccchhh
Q 015772 256 LTPKQKLALA-KQLNLRPRQVEVWFQNRRA 284 (400)
Q Consensus 256 Ps~~~R~eLA-~~LgLserQVqvWFQNRRa 284 (400)
.+...+..|| ...|.-+..|+.||...|.
T Consensus 136 ~~~~~~~~lalaAYNaG~g~V~r~~~~~r~ 165 (206)
T 3t21_A 136 EDPKVLQYALVVSYANGAGALLRTFSSDRK 165 (206)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHHHTTCCC-C
T ss_pred CCcHHHHHHHHHHHhChHHHHHHHHhccch
Confidence 3455554443 4567778889999865443
No 157
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.53 E-value=35 Score=25.51 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=21.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 015772 295 CEYLKRCCETLTEENRRLQKELQELRAL 322 (400)
Q Consensus 295 ~e~l~~~~e~L~~En~~l~~e~~~l~al 322 (400)
...|....+.|..+|..|..++..|+.+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777888999999888887754
No 158
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=43.09 E-value=18 Score=30.64 Aligned_cols=52 Identities=8% Similarity=0.179 Sum_probs=38.1
Q ss_pred CCCCccCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH-Hc--CCCccceeecccchh
Q 015772 232 TRKKLRLSKQQSAFLEESF-KEHTTLTPKQKLALAK-QL--NLRPRQVEVWFQNRR 283 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F-~~~~yPs~~~R~eLA~-~L--gLserQVqvWFQNRR 283 (400)
+++|.++|.+|...|-..+ +.++..+..+....|. ++ ++....|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 6788999999999999998 6677666443333222 67 778888988886643
No 159
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=42.81 E-value=5.4 Score=36.46 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=0.7
Q ss_pred CcccccccccchHHHHHHHHhhc
Q 015772 26 DEDHHHHEDRQTETAAAAAARLV 48 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~ 48 (400)
.||||||||-.--|+.+-.+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (194)
T 3icu_A 3 PEHHHHHHDYDIPTTENLYFQGA 25 (194)
T ss_dssp ---------------------CC
T ss_pred ccccccccccCcccHHHHhccCc
Confidence 47888888877666655544433
No 160
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=42.60 E-value=2.5 Score=41.96 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=8.3
Q ss_pred cChhhhhccCCCcc
Q 015772 48 VDSAEIRRCSTPTA 61 (400)
Q Consensus 48 ~~~~~~~~~~~~~~ 61 (400)
+...+..+..+|+.
T Consensus 22 I~~i~~~~~~~pl~ 35 (393)
T 1wuf_A 22 FQKARLIHAELPLL 35 (393)
T ss_dssp CCEEEEEEEEEEEE
T ss_pred EEEEEEEEEeeecc
Confidence 45566666666653
No 161
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=42.46 E-value=5.2 Score=33.41 Aligned_cols=6 Identities=17% Similarity=0.041 Sum_probs=2.3
Q ss_pred CCCHHH
Q 015772 255 TLTPKQ 260 (400)
Q Consensus 255 yPs~~~ 260 (400)
+.+..+
T Consensus 84 ~I~~~E 89 (143)
T 3a4u_B 84 LLDGLE 89 (143)
T ss_dssp CEEHHH
T ss_pred ccCHHH
Confidence 344333
No 162
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=42.23 E-value=5.3 Score=40.85 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 5 ~~~~~~~~ 12 (480)
T 2zyd_A 5 HHHHHHHH 12 (480)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33344443
No 163
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=42.03 E-value=5.7 Score=40.76 Aligned_cols=10 Identities=50% Similarity=0.949 Sum_probs=2.5
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||+|
T Consensus 3 ~~~~~~~~~~ 12 (460)
T 3k6j_A 3 HHHHHHHHST 12 (460)
T ss_dssp ------CCTT
T ss_pred cccccccccc
Confidence 5666666665
No 164
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=41.86 E-value=5.4 Score=39.31 Aligned_cols=13 Identities=23% Similarity=0.243 Sum_probs=6.6
Q ss_pred ChhhhhccCCCcc
Q 015772 49 DSAEIRRCSTPTA 61 (400)
Q Consensus 49 ~~~~~~~~~~~~~ 61 (400)
...+..+..+|+.
T Consensus 23 ~~i~~~~~~~pl~ 35 (386)
T 1wue_A 23 QSIETYQVRLPLK 35 (386)
T ss_dssp EEEEEEEEEEEEE
T ss_pred EEEEEEEEecccC
Confidence 3445555555553
No 165
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=41.66 E-value=5.5 Score=34.21 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=0.0
Q ss_pred cccccccccchHH
Q 015772 27 EDHHHHEDRQTET 39 (400)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (400)
.||||||||++--
T Consensus 4 ~~~~~~~~~~~~~ 16 (139)
T 2l72_A 4 HHHHHHHHHSSGH 16 (139)
T ss_dssp -------------
T ss_pred ccccccccccccc
Confidence 3444455554433
No 166
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=41.43 E-value=5.6 Score=39.76 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=5.3
Q ss_pred CCHHHHHHHHHH
Q 015772 256 LTPKQKLALAKQ 267 (400)
Q Consensus 256 Ps~~~R~eLA~~ 267 (400)
.+..+-.++++.
T Consensus 232 ~~~~~A~~~~~~ 243 (421)
T 4hnl_A 232 LHPNQAIQFAKA 243 (421)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 344444444444
No 167
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=41.40 E-value=7.6 Score=31.20 Aligned_cols=9 Identities=56% Similarity=0.759 Sum_probs=5.0
Q ss_pred cCccccccc
Q 015772 25 EDEDHHHHE 33 (400)
Q Consensus 25 ~~~~~~~~~ 33 (400)
.||||||||
T Consensus 80 ~~~~~~~~~ 88 (88)
T 1xhj_A 80 FLEHHHHHH 88 (88)
T ss_dssp ECCCCCSCC
T ss_pred cccccccCC
Confidence 456666554
No 168
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=41.20 E-value=17 Score=30.71 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=23.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhhh
Q 015772 243 SAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEV 293 (400)
Q Consensus 243 l~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~~ 293 (400)
+.+++-.|+.|+||... |- +|- -.|||.|||.++.+.
T Consensus 15 vRiIkiLyQSNPyP~pe---------GT--Rqa---RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPE---------GT--RQA---RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHSSCCCCCC---------CC--TTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCC---------Cc--hhh---hHhHHHHHHHHHHHH
Confidence 44556668899999864 11 111 158999999765443
No 169
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=40.85 E-value=7.9 Score=31.30 Aligned_cols=10 Identities=60% Similarity=0.846 Sum_probs=6.5
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
-.+|||||||
T Consensus 82 I~~~~~~~~~ 91 (91)
T 1pqx_A 82 FELEHHHHHH 91 (91)
T ss_dssp TCSCCCCCCC
T ss_pred HHHhhhhccC
Confidence 3567777765
No 170
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=40.76 E-value=5.8 Score=36.43 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=7.3
Q ss_pred HHHHHHHHcCCC
Q 015772 260 QKLALAKQLNLR 271 (400)
Q Consensus 260 ~R~eLA~~LgLs 271 (400)
.-..+++++|+.
T Consensus 137 ~~~~~l~~~G~~ 148 (230)
T 2y8u_A 137 LVLQVMRDLDYR 148 (230)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHcCCE
Confidence 345566777763
No 171
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.65 E-value=14 Score=30.74 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=12.9
Q ss_pred ccccccchHHHHHHHHhhcC
Q 015772 30 HHHEDRQTETAAAAAARLVD 49 (400)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ 49 (400)
||||||.+.|.-+....|++
T Consensus 2 ~~~~~~~~~T~Re~Ii~lL~ 21 (105)
T 2gmg_A 2 HHHHHHGSATRREKIIELLL 21 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHTT
T ss_pred CcccccCcccHHHHHHHHHH
Confidence 45555667777777766665
No 172
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=40.32 E-value=7.8 Score=31.07 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.5
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 92 E~~~~~~ 98 (98)
T 2l3u_A 92 EHHHHHH 98 (98)
T ss_dssp CCSSSCC
T ss_pred cccccCC
Confidence 5555543
No 173
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.87 E-value=9.1 Score=30.16 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=8.9
Q ss_pred ccccccccchHHHHHHHHhhcChh
Q 015772 28 DHHHHEDRQTETAAAAAARLVDSA 51 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~ 51 (400)
||||||-..+...-+.|..+|.-|
T Consensus 3 ~~~~~~~~~~~~~~~~Ai~lv~~A 26 (83)
T 2w2u_A 3 HHHHHHMSAQVMLEEMARKYAINA 26 (83)
T ss_dssp ------CCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCchHHHHHHHHHHHHH
Confidence 344444444444555555555443
No 174
>4fl4_A Glycoside hydrolase family 9; structural genomics, montreal-kingston bacterial structural initiative, BSGI, dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Probab=39.80 E-value=6.1 Score=31.82 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||++
T Consensus 5 ~~~~~~~~~~ 14 (88)
T 4fl4_A 5 HHHHHHHHSS 14 (88)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3344444443
No 175
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=39.65 E-value=5.4 Score=28.34 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=5.7
Q ss_pred ccccccccchHHHHHHHHhhcC
Q 015772 28 DHHHHEDRQTETAAAAAARLVD 49 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (400)
||||||.-.+|-.++.-+||.+
T Consensus 3 ~~~~~~~~~~~lsa~EkaRLrR 24 (46)
T 3sjd_D 3 HHHHHHPMGSELTEAEKRRLLR 24 (46)
T ss_dssp ------------CHHHHHHHHH
T ss_pred ccccCCCccccccHHHHHHHHH
Confidence 5566665666655555566653
No 176
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=39.31 E-value=24 Score=28.29 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=35.3
Q ss_pred CccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 235 KLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 235 RtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
...++..+..+|...++-- .-.+||..||+++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4568999999998765422 2388999999999999988765554443
No 177
>1t3o_A Carbon storage regulator; CSRA, CSRB, CSRC, mostly beta strands, RNA binding protein, beta sheet surface; NMR {Bacillus subtilis}
Probab=39.24 E-value=6.3 Score=32.32 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=0.8
Q ss_pred ccccccccc
Q 015772 28 DHHHHEDRQ 36 (400)
Q Consensus 28 ~~~~~~~~~ 36 (400)
||||||||+
T Consensus 5 ~~~~~~~~~ 13 (95)
T 1t3o_A 5 HHHHHHHHS 13 (95)
T ss_dssp -------CC
T ss_pred ccccccccc
Confidence 333344443
No 178
>2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y* 2ox5_Y*
Probab=39.11 E-value=8.8 Score=32.78 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=12.9
Q ss_pred ccccccchHHHHHHHHhhcChhhh
Q 015772 30 HHHEDRQTETAAAAAARLVDSAEI 53 (400)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~ 53 (400)
||||||.++|-..+...|.-...+
T Consensus 5 ~~~~~~~~~~w~~~~~~~~G~~~~ 28 (124)
T 2oxg_Y 5 HHHHHHGSSTVDELTAAFTGGAAT 28 (124)
T ss_dssp ------CCCHHHHHHHHHHTTCCE
T ss_pred ccccccCcccHHHHHHHHhCCCCC
Confidence 555566677888888887765543
No 179
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=39.01 E-value=3.5 Score=40.22 Aligned_cols=13 Identities=46% Similarity=0.854 Sum_probs=2.4
Q ss_pred ccccccccchHHH
Q 015772 28 DHHHHEDRQTETA 40 (400)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (400)
||||||||--+.+
T Consensus 1 ~~~~~~~~~~~~~ 13 (307)
T 2l7b_A 1 HHHHHHHHKVEQA 13 (307)
T ss_dssp --------CCSTT
T ss_pred CCccchhHHHHHH
Confidence 4566666655543
No 180
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=38.74 E-value=7.4 Score=28.45 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=1.4
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 56 ehhhhh 61 (62)
T 2gjh_A 56 EHHHHH 61 (62)
T ss_dssp CCC---
T ss_pred cccccC
Confidence 444444
No 181
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=38.19 E-value=6.7 Score=30.76 Aligned_cols=11 Identities=45% Similarity=0.788 Sum_probs=2.5
Q ss_pred CCcCccccccc
Q 015772 23 TQEDEDHHHHE 33 (400)
Q Consensus 23 ~~~~~~~~~~~ 33 (400)
..++|||||||
T Consensus 70 ~~~~~~~~~~~ 80 (80)
T 2exd_A 70 PPQLEHHHHHH 80 (80)
T ss_dssp CCTTC------
T ss_pred CcCccccccCC
Confidence 34556665554
No 182
>4dtg_K Tissue factor pathway inhibitor; antibody, blood coagulation, blood clotting inhib immune system complex; HET: MES PGE; 1.80A {Homo sapiens} PDB: 1tfx_C
Probab=38.16 E-value=8 Score=29.21 Aligned_cols=8 Identities=25% Similarity=0.019 Sum_probs=4.3
Q ss_pred CCCCCCCC
Q 015772 17 DDNRKPTQ 24 (400)
Q Consensus 17 ~~~~~~~~ 24 (400)
..|+-.|.
T Consensus 43 N~NnF~t~ 50 (66)
T 4dtg_K 43 NMNNFETL 50 (66)
T ss_dssp CSSCBSSH
T ss_pred CCCCCCCH
Confidence 35666654
No 183
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=37.88 E-value=11 Score=29.03 Aligned_cols=8 Identities=63% Similarity=1.111 Sum_probs=3.6
Q ss_pred cCcccccc
Q 015772 25 EDEDHHHH 32 (400)
Q Consensus 25 ~~~~~~~~ 32 (400)
..||||||
T Consensus 76 ~~~~~~~~ 83 (84)
T 2kcc_A 76 DLEHHHHH 83 (84)
T ss_dssp CSCCCCCC
T ss_pred ChhhcccC
Confidence 34444444
No 184
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=37.68 E-value=8.3 Score=31.46 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=6.0
Q ss_pred cccccccchHHHHHHHHh
Q 015772 29 HHHHEDRQTETAAAAAAR 46 (400)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~ 46 (400)
||||||-+.+.-.+|+..
T Consensus 3 ~~~~~~~~~~~F~~A~~~ 20 (96)
T 2lbb_A 3 HHHHHHMSADDFDAAVKY 20 (96)
T ss_dssp ------CCSSTHHHHHHH
T ss_pred cccccccCHHHHHHHHHH
Confidence 455555555555555443
No 185
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=37.33 E-value=7 Score=31.64 Aligned_cols=6 Identities=17% Similarity=0.385 Sum_probs=2.8
Q ss_pred hhcChh
Q 015772 46 RLVDSA 51 (400)
Q Consensus 46 ~~~~~~ 51 (400)
.||.+.
T Consensus 17 tivspe 22 (113)
T 2hdi_B 17 TIVSPE 22 (113)
T ss_dssp HHHCTT
T ss_pred eeeCcc
Confidence 355543
No 186
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=37.11 E-value=7.1 Score=38.37 Aligned_cols=7 Identities=57% Similarity=1.198 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 28 DHHHHED 34 (400)
Q Consensus 28 ~~~~~~~ 34 (400)
|||||||
T Consensus 4 ~~~~~~~ 10 (478)
T 2ivd_A 4 HHHHHHH 10 (478)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 187
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=36.92 E-value=7.2 Score=37.38 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=0.0
Q ss_pred cccccccccchHHHHHH
Q 015772 27 EDHHHHEDRQTETAAAA 43 (400)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ 43 (400)
.||||||.+....+++.
T Consensus 4 ~~~~~~~~~~~~~l~~C 20 (414)
T 3quf_A 4 SHHHHHHSSGRENLYFQ 20 (414)
T ss_dssp -----------------
T ss_pred ccccccccccchhhhhc
Confidence 35555555555555443
No 188
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=36.80 E-value=7.3 Score=38.96 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
+||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (365)
T 4amu_A 4 HHHHHHHHHSS 14 (365)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 34444444444
No 189
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.70 E-value=21 Score=27.12 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=35.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 236 LRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
..++..+..+|...++ . ....+||..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4589999999987432 2 246789999999999999887765555543
No 190
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=36.36 E-value=11 Score=28.06 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=6.3
Q ss_pred CCcCccccccc
Q 015772 23 TQEDEDHHHHE 33 (400)
Q Consensus 23 ~~~~~~~~~~~ 33 (400)
....|||||||
T Consensus 60 l~~~~~~~~~~ 70 (70)
T 2kq8_A 60 LSKLEHHHHHH 70 (70)
T ss_dssp CSCCCSCCSCC
T ss_pred ccchhhcccCC
Confidence 44556666654
No 191
>2kvz_A ISPE; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Listeria monocytogenes}
Probab=36.28 E-value=13 Score=29.69 Aligned_cols=9 Identities=56% Similarity=0.903 Sum_probs=4.1
Q ss_pred cCccccccc
Q 015772 25 EDEDHHHHE 33 (400)
Q Consensus 25 ~~~~~~~~~ 33 (400)
-+|||||||
T Consensus 77 ~~~~~~~~~ 85 (85)
T 2kvz_A 77 ALEHHHHHH 85 (85)
T ss_dssp TCCCCCCCC
T ss_pred cccccccCC
Confidence 344444443
No 192
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.26 E-value=13 Score=29.13 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
.++..|..+|...++-. ...+||..||++...|+.+..+-+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 58999999998864322 2478999999999999988766555554
No 193
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=36.25 E-value=7.5 Score=38.16 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=7.4
Q ss_pred HHHcCCCccceeecc
Q 015772 265 AKQLNLRPRQVEVWF 279 (400)
Q Consensus 265 A~~LgLserQVqvWF 279 (400)
|++.|+.-+.|.-|+
T Consensus 261 A~~~gi~Gk~vTPfL 275 (316)
T 4ex8_A 261 CDQEGIVGNAVSPYL 275 (316)
T ss_dssp HHHTTCCGGGHHHHH
T ss_pred HHHcCCccccCCHHH
Confidence 344455555555444
No 194
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=36.16 E-value=33 Score=26.96 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=37.0
Q ss_pred CCCccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHcCC--Cccceeeccc
Q 015772 233 RKKLRLSKQQSAFLEESFK-----EHTTLTPKQKLALAKQLNL--RPRQVEVWFQ 280 (400)
Q Consensus 233 RkRtrfT~~Ql~~LE~~F~-----~~~yPs~~~R~eLA~~LgL--serQVqvWFQ 280 (400)
++...++.+|+..|++.|. .+.+.+..+...+.+.+|+ +..+|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455689999999999997 3568999999998888874 5666666663
No 195
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=35.71 E-value=0.96 Score=39.60 Aligned_cols=30 Identities=0% Similarity=-0.045 Sum_probs=21.5
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCH
Q 015772 229 GCSTRKKLRLSKQQSAFLEESFKEHTTLTP 258 (400)
Q Consensus 229 ~~~rRkRtrfT~~Ql~~LE~~F~~~~yPs~ 258 (400)
.+.||.|+.|+..|+++|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 356788999999999999999999999864
No 196
>1t82_A Hypothetical acetyltransferase; structural genomics, alpha-beta dimeric protein with A fold resembling A hotdog, PSI; 1.70A {Shewanella oneidensis} SCOP: d.38.1.5
Probab=35.59 E-value=14 Score=31.67 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=7.7
Q ss_pred cccccccccchHHHHHHHHhh
Q 015772 27 EDHHHHEDRQTETAAAAAARL 47 (400)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~ 47 (400)
.||||||.|-.|+++...+.+
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~~ 22 (155)
T 1t82_A 2 GHHHHHHSHMDELLNRLRQTW 22 (155)
T ss_dssp ---------CHHHHHHHHHHH
T ss_pred CccccchhhhhHHHHHHHHHH
Confidence 367777778888876555433
No 197
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=35.55 E-value=7.8 Score=33.74 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||++
T Consensus 5 ~~~~~~~~~~ 14 (142)
T 2pi2_E 5 HHHHHHHHSS 14 (142)
T ss_dssp ----------
T ss_pred cccccccccC
Confidence 4444444444
No 198
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=35.34 E-value=11 Score=29.15 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=4.1
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
-|||||||
T Consensus 78 lehhhhhh 85 (85)
T 2kl8_A 78 LEHHHHHH 85 (85)
T ss_dssp CCCCCCCC
T ss_pred eeccccCC
Confidence 35555554
No 199
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=35.31 E-value=15 Score=27.01 Aligned_cols=46 Identities=28% Similarity=0.350 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
.++..+..+|...|. .+ ...++|..+|++...|+.++.+-+.|.+.
T Consensus 16 ~L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 16 TLSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred hCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 367888888877432 22 34689999999999999887765555553
No 200
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=35.09 E-value=8 Score=40.06 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||.+
T Consensus 4 ~~~~~~~~~~ 13 (530)
T 2y3s_A 4 HHHHHHHHGS 13 (530)
T ss_dssp ----------
T ss_pred ccccccccCc
Confidence 5555555544
No 201
>2ln3_A De novo designed protein OR135; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.06 E-value=11 Score=28.98 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.1
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 77 ehhhhhh 83 (83)
T 2ln3_A 77 EHHHHHH 83 (83)
T ss_dssp CSCCSCC
T ss_pred hhcccCC
Confidence 4444443
No 202
>2kcp_A 30S ribosomal protein S8E; RPS8E, beta, NESG, ribonucleoprotein, structural genomics, PSI-2; NMR {Methanothermobacter thermautotrophicusstr} PDB: 2kcy_A
Probab=34.99 E-value=12 Score=30.79 Aligned_cols=9 Identities=67% Similarity=1.036 Sum_probs=4.7
Q ss_pred cCccccccc
Q 015772 25 EDEDHHHHE 33 (400)
Q Consensus 25 ~~~~~~~~~ 33 (400)
..|||||||
T Consensus 90 g~e~~~~~~ 98 (98)
T 2kcp_A 90 ELEHHHHHH 98 (98)
T ss_dssp CSCCCCCCC
T ss_pred cccccccCC
Confidence 345555554
No 203
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=34.91 E-value=8.1 Score=36.88 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=0.0
Q ss_pred cccccccccchHHHHHHHH
Q 015772 27 EDHHHHEDRQTETAAAAAA 45 (400)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~ 45 (400)
.|||||||-.--++..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (295)
T 1p99_A 2 GHHHHHHDYDIPTTENLYF 20 (295)
T ss_dssp -------------------
T ss_pred CccccccccchHHHHHHHH
Confidence 4677777777777665544
No 204
>3c8x_A Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; 1.95A {Homo sapiens} PDB: 3skj_E 3czu_A* 3hei_A 3hpn_A
Probab=34.60 E-value=8.3 Score=35.73 Aligned_cols=13 Identities=54% Similarity=0.861 Sum_probs=0.0
Q ss_pred cccccccccchHH
Q 015772 27 EDHHHHEDRQTET 39 (400)
Q Consensus 27 ~~~~~~~~~~~~~ 39 (400)
||||||||-.--|
T Consensus 3 ~~~~~~~~~~~~~ 15 (206)
T 3c8x_A 3 EHHHHHHDYDIPT 15 (206)
T ss_dssp -------------
T ss_pred cccccccccCCcc
Confidence 6777777765444
No 205
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=34.54 E-value=8.3 Score=36.09 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=8.5
Q ss_pred HHHHHHHHHcCCCc
Q 015772 259 KQKLALAKQLNLRP 272 (400)
Q Consensus 259 ~~R~eLA~~LgLse 272 (400)
.+-+|.|+-+|.+.
T Consensus 191 ~~l~EAA~~~Gas~ 204 (295)
T 3d31_C 191 PRLENAARSLGAPL 204 (295)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred hHHHHHHHHcCCCH
Confidence 44556677777654
No 206
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=34.48 E-value=8.3 Score=34.17 Aligned_cols=6 Identities=50% Similarity=1.077 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 30 HHHEDR 35 (400)
Q Consensus 30 ~~~~~~ 35 (400)
||||||
T Consensus 5 ~~~~~~ 10 (188)
T 2r5o_A 5 HHHHHH 10 (188)
T ss_dssp ------
T ss_pred cccccc
Confidence 333333
No 207
>4g2c_A DYP2; DYE peroxidase, oxidoreductase; HET: HEM; 2.25A {Amycolatopsis SP}
Probab=34.48 E-value=8.3 Score=40.04 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=4.0
Q ss_pred cccccCCC
Q 015772 70 QQLDLLPN 77 (400)
Q Consensus 70 ~~~~~~~~ 77 (400)
+|=|+|.-
T Consensus 54 IQG~IL~g 61 (493)
T 4g2c_A 54 LQPNILKA 61 (493)
T ss_dssp SCTTSSSC
T ss_pred cchhhhcC
Confidence 45555543
No 208
>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile}
Probab=34.45 E-value=8.3 Score=37.57 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=0.0
Q ss_pred cccccccccch
Q 015772 27 EDHHHHEDRQT 37 (400)
Q Consensus 27 ~~~~~~~~~~~ 37 (400)
.||||||||++
T Consensus 4 ~~~~~~~~~~~ 14 (332)
T 2qj6_A 4 SHHHHHHHHAS 14 (332)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 35555555544
No 209
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=34.41 E-value=8.4 Score=41.43 Aligned_cols=9 Identities=33% Similarity=0.043 Sum_probs=4.0
Q ss_pred HHHHHHHHc
Q 015772 260 QKLALAKQL 268 (400)
Q Consensus 260 ~R~eLA~~L 268 (400)
-|+..|+.|
T Consensus 244 VRETaAQtL 252 (800)
T 3oc3_A 244 VRDAAAYLL 252 (800)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 455444443
No 210
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=34.37 E-value=8.4 Score=35.61 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
.||||||||++-
T Consensus 4 ~~~~~~~~~~~~ 15 (203)
T 1nwa_A 4 HHHHHHHHHSSG 15 (203)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 344444455443
No 211
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=34.36 E-value=12 Score=29.11 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=5.8
Q ss_pred CCCCcCcccccccc
Q 015772 21 KPTQEDEDHHHHED 34 (400)
Q Consensus 21 ~~~~~~~~~~~~~~ 34 (400)
.+.+...+.|||||
T Consensus 64 ~~VgGG~~~~~~~~ 77 (78)
T 2k5p_A 64 YFMGGGKLEHHHHH 77 (78)
T ss_dssp CCCCCSCCCCCCCC
T ss_pred eeecCCCchhcccc
Confidence 44554433333333
No 212
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=34.32 E-value=12 Score=38.13 Aligned_cols=14 Identities=21% Similarity=0.002 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhc
Q 015772 240 KQQSAFLEESFKEH 253 (400)
Q Consensus 240 ~~Ql~~LE~~F~~~ 253 (400)
.+-+..|.+.+++-
T Consensus 283 d~f~~~l~~~~~~~ 296 (468)
T 1vlu_A 283 SKWWEVLENLTLEG 296 (468)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34455555555443
No 213
>2w7q_A Outer-membrane lipoprotein carrier protein; periplasmic chaperone, lipoprotein transport, transport, CHA protein transport; 1.88A {Pseudomonas aeruginosa}
Probab=34.30 E-value=8.4 Score=34.06 Aligned_cols=6 Identities=17% Similarity=0.428 Sum_probs=3.0
Q ss_pred ceeecc
Q 015772 274 QVEVWF 279 (400)
Q Consensus 274 QVqvWF 279 (400)
+|++||
T Consensus 150 ~i~l~~ 155 (204)
T 2w7q_A 150 TLRLSF 155 (204)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 455555
No 214
>3ako_A Venus; fluorescent protein, GFP; HET: CR2 PE8; 2.10A {Plant transformation vector psiteii-4corganism_taxid}
Probab=34.13 E-value=8.5 Score=34.69 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||++
T Consensus 5 ~~~~~~~~~~ 14 (173)
T 3ako_A 5 HHHHHHHHSS 14 (173)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444444444
No 215
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=33.82 E-value=8.7 Score=37.07 Aligned_cols=10 Identities=50% Similarity=0.909 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||-|
T Consensus 3 ~~~~~~~~~~ 12 (320)
T 3q8g_A 3 HHHHHHHHMT 12 (320)
T ss_dssp ----------
T ss_pred ccccccchhh
Confidence 4555555443
No 216
>3p1i_A Ephrin type-B receptor 3; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; 2.10A {Homo sapiens}
Probab=33.70 E-value=8.7 Score=35.41 Aligned_cols=14 Identities=50% Similarity=0.783 Sum_probs=0.0
Q ss_pred CcccccccccchHH
Q 015772 26 DEDHHHHEDRQTET 39 (400)
Q Consensus 26 ~~~~~~~~~~~~~~ 39 (400)
.||||||||-.--|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (200)
T 3p1i_A 3 PEHHHHHHDYDIPT 16 (200)
T ss_dssp --------------
T ss_pred ccccccccccCCCc
Confidence 36777777765444
No 217
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=33.59 E-value=12 Score=26.81 Aligned_cols=46 Identities=11% Similarity=-0.100 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
.++..+..+|...|-.. ..-.++|..+|++...|+.|...-+.+.|
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 47788888888765332 23568999999999999988765544444
No 218
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=33.56 E-value=27 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhhhhhhhh
Q 015772 243 SAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVD 294 (400)
Q Consensus 243 l~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Krkq~~~~ 294 (400)
+.+++-.|+.|+||...--.+ | -.|||.+|+.+|.+..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHHH
Confidence 455666789999998642111 1 1489999987665544
No 219
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.31 E-value=11 Score=28.80 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=6.6
Q ss_pred CCCCCCCCcCccccccc
Q 015772 17 DDNRKPTQEDEDHHHHE 33 (400)
Q Consensus 17 ~~~~~~~~~~~~~~~~~ 33 (400)
++.|+.++.+-.|||||
T Consensus 50 ~Ear~~~~~~~~~~~~~ 66 (67)
T 2jny_A 50 DEATEWTPNNLEHHHHH 66 (67)
T ss_dssp SCCEECCCCCCC-----
T ss_pred hHhcCCchhhhhhhccC
Confidence 45566655555555544
No 220
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=33.27 E-value=15 Score=31.33 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=4.2
Q ss_pred hhhccCCC
Q 015772 52 EIRRCSTP 59 (400)
Q Consensus 52 ~~~~~~~~ 59 (400)
...|+++|
T Consensus 36 ~~IRl~iP 43 (123)
T 3lhp_S 36 AAVRKVFP 43 (123)
T ss_dssp HHHTTSCC
T ss_pred CeEEeeCC
Confidence 34455555
No 221
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.13 E-value=15 Score=28.98 Aligned_cols=20 Identities=45% Similarity=0.639 Sum_probs=6.3
Q ss_pred ccccccccchHHHHHHHHhh
Q 015772 28 DHHHHEDRQTETAAAAAARL 47 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~ 47 (400)
|||||-|.|+..+..-+.+-
T Consensus 4 ~~~~~~~~~~~~A~~lv~~A 23 (86)
T 4a5x_A 4 HHHHHMDPQSTAAATVLKRA 23 (86)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHH
Confidence 45555556665554444433
No 222
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.91 E-value=97 Score=22.52 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=11.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Q 015772 296 EYLKRCCETLTEENRRLQKELQELR 320 (400)
Q Consensus 296 e~l~~~~e~L~~En~~l~~e~~~l~ 320 (400)
+.+...+..|..+...|+.|+..|+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 223
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=32.30 E-value=22 Score=25.55 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=33.9
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 236 LRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
..++..|..+|...+. .+ ...++|..+|++...|+.++.+-+.|.+
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 4588999999987432 22 3568999999999999888765554444
No 224
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=31.90 E-value=12 Score=30.29 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=9.7
Q ss_pred cccccccchHHHHHHHHhhcCh
Q 015772 29 HHHHEDRQTETAAAAAARLVDS 50 (400)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~ 50 (400)
||||||--++.+.+....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~ 24 (118)
T 3c1r_A 3 HHHHHHMVSQETIKHVKDLIAE 24 (118)
T ss_dssp -----CCSCHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHHcc
Confidence 4555555555555555555544
No 225
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=31.87 E-value=9.8 Score=32.10 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=0.0
Q ss_pred ccccccccchHHHHHHHHhhc
Q 015772 28 DHHHHEDRQTETAAAAAARLV 48 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (400)
.||||||.+-|.++--.|+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~lr 24 (133)
T 3q9v_A 4 SHHHHHHSSGENLYFEGSHMA 24 (133)
T ss_dssp ---------------------
T ss_pred cccccccccchhhhHHHHHHH
Confidence 356666666677766666554
No 226
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=31.53 E-value=10 Score=28.73 Aligned_cols=8 Identities=75% Similarity=1.244 Sum_probs=0.0
Q ss_pred cCcccccc
Q 015772 25 EDEDHHHH 32 (400)
Q Consensus 25 ~~~~~~~~ 32 (400)
||-|||||
T Consensus 58 ~~~~~~~~ 65 (66)
T 2kn0_A 58 EDLHHHHH 65 (66)
T ss_dssp --------
T ss_pred hhhhhccc
Confidence 44444444
No 227
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=31.45 E-value=13 Score=29.05 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.2
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 85 ~~~~~~~ 91 (91)
T 2kjp_A 85 EHHHHHH 91 (91)
T ss_dssp CTTCSCC
T ss_pred eccccCC
Confidence 4444443
No 228
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=31.42 E-value=10 Score=39.16 Aligned_cols=9 Identities=56% Similarity=1.114 Sum_probs=0.0
Q ss_pred ccccccccc
Q 015772 28 DHHHHEDRQ 36 (400)
Q Consensus 28 ~~~~~~~~~ 36 (400)
||||||||+
T Consensus 3 ~~~~~~~~~ 11 (521)
T 2ipi_A 3 HHHHHHHRS 11 (521)
T ss_dssp ---------
T ss_pred ccccccchh
Confidence 566666654
No 229
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=31.42 E-value=10 Score=36.43 Aligned_cols=9 Identities=22% Similarity=0.161 Sum_probs=4.3
Q ss_pred HHHHHcCCC
Q 015772 263 ALAKQLNLR 271 (400)
Q Consensus 263 eLA~~LgLs 271 (400)
++|..+|+.
T Consensus 149 ~~a~~lG~~ 157 (301)
T 2j6v_A 149 RLLSLLGAE 157 (301)
T ss_dssp HHHHHTTCT
T ss_pred HHHHHcCCC
Confidence 345555544
No 230
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=31.29 E-value=14 Score=28.24 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.1
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 60 ~~~~~~~ 66 (66)
T 2jz2_A 60 EHHHHHH 66 (66)
T ss_dssp CCCCCCC
T ss_pred cccccCC
Confidence 4444443
No 231
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=31.16 E-value=13 Score=28.02 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.3
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 68 ~~~~~~~ 74 (74)
T 2krs_A 68 EHHHHHH 74 (74)
T ss_dssp CCSCCCC
T ss_pred hhcccCC
Confidence 4444443
No 232
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type transferase; 1.90A {Marchantia polymorpha}
Probab=31.15 E-value=11 Score=37.49 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHcCCCccc
Q 015772 257 TPKQKLALAKQLNLRPRQ 274 (400)
Q Consensus 257 s~~~R~eLA~~LgLserQ 274 (400)
+..-...++++|+|++.+
T Consensus 324 ~~~i~~~~~~~Lgl~~ek 341 (413)
T 2p0u_A 324 GPAILDQVEAKLELEKGK 341 (413)
T ss_dssp SHHHHHHHHHHTTCCGGG
T ss_pred CHHHHHHHHHHhCCCHHH
Confidence 344444455555555443
No 233
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=31.14 E-value=38 Score=27.65 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
.++..|..+|...|... ..-.++|..+|++...|+.|...-|.+.|+
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47788888887765433 235789999999999999998766655554
No 234
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory for structural genomics hyperthermophIle, PSI; 2.80A {Pyrococcus furiosus} SCOP: e.7.1.1
Probab=31.11 E-value=14 Score=34.46 Aligned_cols=7 Identities=57% Similarity=1.184 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 28 DHHHHED 34 (400)
Q Consensus 28 ~~~~~~~ 34 (400)
||||||.
T Consensus 2 ~~~~~~~ 8 (262)
T 1xi6_A 2 HHHHHHG 8 (262)
T ss_dssp -------
T ss_pred Ccccccc
Confidence 3444433
No 235
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=31.01 E-value=12 Score=29.13 Aligned_cols=12 Identities=42% Similarity=0.697 Sum_probs=6.7
Q ss_pred CCCcCccccccc
Q 015772 22 PTQEDEDHHHHE 33 (400)
Q Consensus 22 ~~~~~~~~~~~~ 33 (400)
+.++-|||||||
T Consensus 72 ~~~~~~~~~~~~ 83 (83)
T 2lx9_A 72 AVSSLEHHHHHH 83 (83)
T ss_dssp ECCCCCCCCSCC
T ss_pred ECchhhhhccCC
Confidence 345556666654
No 236
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=30.97 E-value=10 Score=30.18 Aligned_cols=10 Identities=40% Similarity=0.916 Sum_probs=0.0
Q ss_pred ccccccccch
Q 015772 28 DHHHHEDRQT 37 (400)
Q Consensus 28 ~~~~~~~~~~ 37 (400)
||||||||++
T Consensus 5 ~~~~~~~~~~ 14 (87)
T 1tyg_B 5 HHHHHHHHSS 14 (87)
T ss_dssp ----------
T ss_pred cccccccccC
Confidence 3334444443
No 237
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=30.45 E-value=12 Score=28.68 Aligned_cols=10 Identities=60% Similarity=0.883 Sum_probs=5.7
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
-+-|||||||
T Consensus 72 V~~~~~~~~~ 81 (81)
T 2k5l_A 72 VELEHHHHHH 81 (81)
T ss_dssp EEECCCCCCC
T ss_pred EEEcccccCC
Confidence 3556666654
No 238
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=30.45 E-value=14 Score=29.77 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.3
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 92 ~~~~~~~ 98 (98)
T 2kps_A 92 EHHHHHH 98 (98)
T ss_dssp CSSCCCC
T ss_pred hhcccCC
Confidence 4444443
No 239
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=30.18 E-value=9.1 Score=38.27 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=12.2
Q ss_pred ccCCHHHHHHHHHHHhh
Q 015772 236 LRLSKQQSAFLEESFKE 252 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~ 252 (400)
..++.+|+..|-++.++
T Consensus 205 ~~~~~~~~~~i~~~~~~ 221 (420)
T 4h51_A 205 VDPSQEQWNEIASLMLA 221 (420)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 35788888888777554
No 240
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.16 E-value=1.2e+02 Score=22.43 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=14.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 015772 296 EYLKRCCETLTEENRRLQKELQELRAL 322 (400)
Q Consensus 296 e~l~~~~e~L~~En~~l~~e~~~l~al 322 (400)
+.|...+..|..+-..|+.|+..|+.|
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544
No 241
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.71 E-value=85 Score=23.22 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=22.8
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 015772 293 VDCEYLKRCCETLTEENRRLQKELQELRA 321 (400)
Q Consensus 293 ~~~e~l~~~~e~L~~En~~l~~e~~~l~a 321 (400)
...+.+......|..+|..|..++..|..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455777788999999999998888773
No 242
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=29.71 E-value=79 Score=26.22 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCccCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcc
Q 015772 233 RKKLRLSKQQSAFLEESFKE-----HTTLTPKQKLALAKQLNLRPR 273 (400)
Q Consensus 233 RkRtrfT~~Ql~~LE~~F~~-----~~yPs~~~R~eLA~~LgLser 273 (400)
.+|..+|.+|+..|+..|.. +.+.+..+...+.+.||+.+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 35567999999999999973 568999998888888886553
No 243
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1
Probab=29.68 E-value=14 Score=37.15 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=8.3
Q ss_pred CcccccccccchHHHHHHHHhhcC
Q 015772 26 DEDHHHHEDRQTETAAAAAARLVD 49 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~ 49 (400)
|.-||||||--|......+.+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~ 27 (451)
T 1vpb_A 4 DKIHHHHHHMITDENKKLAQWAMD 27 (451)
T ss_dssp ---------CCCHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHHHH
Confidence 344666666666555555555544
No 244
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=29.46 E-value=15 Score=28.04 Aligned_cols=10 Identities=50% Similarity=0.807 Sum_probs=5.1
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
..-|||||||
T Consensus 67 ~~~~~~~~~~ 76 (76)
T 2kt8_A 67 EVLEHHHHHH 76 (76)
T ss_dssp CCCCSCCSCC
T ss_pred ccccccccCC
Confidence 3445555554
No 245
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=29.29 E-value=12 Score=30.12 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=0.0
Q ss_pred ccccccchHHHHHHHHhhcChh
Q 015772 30 HHHEDRQTETAAAAAARLVDSA 51 (400)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~ 51 (400)
||||||-+|...+++...+.|-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~P~ 23 (93)
T 1n9r_A 2 HHHHHHMSESSDISAMQPVNPK 23 (93)
T ss_dssp ----------------------
T ss_pred cccccccccCccccccccCChH
Confidence 3444455555555444444443
No 246
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=29.16 E-value=12 Score=39.06 Aligned_cols=12 Identities=50% Similarity=0.858 Sum_probs=0.0
Q ss_pred Ccccccccccch
Q 015772 26 DEDHHHHEDRQT 37 (400)
Q Consensus 26 ~~~~~~~~~~~~ 37 (400)
.||||||||-.-
T Consensus 3 ~~~~~~~~~~~~ 14 (536)
T 3fl7_A 3 PEHHHHHHDYDI 14 (536)
T ss_dssp ------------
T ss_pred ccccccccccCC
Confidence 367777777653
No 247
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=29.00 E-value=12 Score=33.88 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 3 ~~~~~~~~ 10 (190)
T 3ix9_A 3 HHHHHHHH 10 (190)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34444444
No 248
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=28.90 E-value=13 Score=29.09 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=4.1
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
-|||||||
T Consensus 80 ~E~~~~~~ 87 (87)
T 2kjs_A 80 LEHHHHHH 87 (87)
T ss_dssp HHCSSCCC
T ss_pred HhcccccC
Confidence 35555554
No 249
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=28.84 E-value=12 Score=32.83 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=6.9
Q ss_pred HHHHHHHHhhcChhh
Q 015772 38 ETAAAAAARLVDSAE 52 (400)
Q Consensus 38 ~~~~~~~~~~~~~~~ 52 (400)
+.++.---+|+..-+
T Consensus 22 ~~Lq~~L~~ll~rv~ 36 (143)
T 3cpt_A 22 DDLKRFLYKKLPSVE 36 (143)
T ss_dssp CHHHHHHHHHGGGST
T ss_pred HHHHHHHHHHHhccC
Confidence 444444444454443
No 250
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=28.80 E-value=12 Score=42.70 Aligned_cols=10 Identities=30% Similarity=0.255 Sum_probs=6.0
Q ss_pred HHHHHHcCCC
Q 015772 262 LALAKQLNLR 271 (400)
Q Consensus 262 ~eLA~~LgLs 271 (400)
..+++.+|+.
T Consensus 279 ~~i~~alg~~ 288 (1165)
T 2qf7_A 279 LKIAGATNYI 288 (1165)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 3456667764
No 251
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1
Probab=28.67 E-value=12 Score=30.74 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=0.0
Q ss_pred ccccccchHHHHHHHHhhcC
Q 015772 30 HHHEDRQTETAAAAAARLVD 49 (400)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ 49 (400)
||||||.++.++.--+.++.
T Consensus 5 ~~~~~~~~~~l~~~~a~~~~ 24 (113)
T 1hxv_A 5 HHHHHHGSEKLAKTKSTMVD 24 (113)
T ss_dssp --------------------
T ss_pred cccccccHHHHHHhCCeEEe
Confidence 55556667777777666664
No 252
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=28.65 E-value=14 Score=30.14 Aligned_cols=13 Identities=38% Similarity=0.419 Sum_probs=5.5
Q ss_pred CCCCcCccccccc
Q 015772 21 KPTQEDEDHHHHE 33 (400)
Q Consensus 21 ~~~~~~~~~~~~~ 33 (400)
+--.-+|||||||
T Consensus 87 ~~l~~~~~~~~~~ 99 (99)
T 3cim_A 87 YVLPILEHHHHHH 99 (99)
T ss_dssp GTSTTSTTCC---
T ss_pred HhhccccccccCC
Confidence 3444566666664
No 253
>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A*
Probab=28.59 E-value=9.2 Score=34.26 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=7.6
Q ss_pred ccccccccchHHHHHHHHhhcC
Q 015772 28 DHHHHEDRQTETAAAAAARLVD 49 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (400)
|||||||..-|.--..-+|||.
T Consensus 3 ~~~~~~~~~feappsiwsrv~~ 24 (194)
T 2fyq_A 3 HHHHHHDDDDKAPPTLWSRVTK 24 (194)
T ss_dssp -----------CCHHHHHTEEE
T ss_pred cccccccccccCChhhhhheEe
Confidence 6777777666666666778875
No 254
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.52 E-value=1.2e+02 Score=22.34 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=11.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHH
Q 015772 298 LKRCCETLTEENRRLQKELQELR 320 (400)
Q Consensus 298 l~~~~e~L~~En~~l~~e~~~l~ 320 (400)
|......|..+|..|+.++..|.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444
No 255
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=28.52 E-value=16 Score=29.77 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.1
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 86 ~~~~~~~ 92 (92)
T 2g0u_A 86 EHHHHHH 92 (92)
T ss_dssp CCCCSCC
T ss_pred HhcccCC
Confidence 4444443
No 256
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=28.51 E-value=12 Score=31.99 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=0.0
Q ss_pred ccccccccchHHHHHHHH
Q 015772 28 DHHHHEDRQTETAAAAAA 45 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~ 45 (400)
.||||||.+-|.+.+-|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (131)
T 2h7w_A 4 SHHHHHHSSGENLYFQGH 21 (131)
T ss_dssp ------------------
T ss_pred ccccccccCCCceEEecc
Confidence 466666677777776664
No 257
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=28.34 E-value=12 Score=30.43 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 89 ~~~~~~~ 95 (95)
T 2w7v_A 89 EHHHHHH 95 (95)
T ss_dssp -------
T ss_pred cccccCC
Confidence 4444443
No 258
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=28.09 E-value=12 Score=35.35 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 3 ~~~~~~~~ 10 (290)
T 3qtc_A 3 HHHHHHHH 10 (290)
T ss_dssp --------
T ss_pred cccccccc
Confidence 34444443
No 259
>2h4o_A YONK protein; PSI, protein structure initiative, northeast structural GENO consortium, NESG, structural genomi unknown function; 2.80A {Bacillus subtilis} SCOP: d.368.1.1
Probab=28.05 E-value=12 Score=28.33 Aligned_cols=8 Identities=25% Similarity=0.547 Sum_probs=3.9
Q ss_pred CCCCCCCc
Q 015772 18 DNRKPTQE 25 (400)
Q Consensus 18 ~~~~~~~~ 25 (400)
.|.-|..+
T Consensus 54 enelpvk~ 61 (76)
T 2h4o_A 54 ENELPVKG 61 (76)
T ss_dssp CCCCCCSC
T ss_pred cccCCccc
Confidence 44555444
No 260
>2rcf_A Unidentified carboxysome polypeptide; cyclic pentamer, structural protein; 2.15A {Halothiobacillus neapolitanus} SCOP: b.40.15.1
Probab=27.92 E-value=13 Score=30.23 Aligned_cols=8 Identities=75% Similarity=1.149 Sum_probs=0.0
Q ss_pred cCcccccc
Q 015772 25 EDEDHHHH 32 (400)
Q Consensus 25 ~~~~~~~~ 32 (400)
+.||||||
T Consensus 83 ~~~~~~~~ 90 (91)
T 2rcf_A 83 ELEHHHHH 90 (91)
T ss_dssp --------
T ss_pred CccccccC
Confidence 34444444
No 261
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=27.81 E-value=18 Score=27.65 Aligned_cols=11 Identities=64% Similarity=1.008 Sum_probs=4.6
Q ss_pred CCCc-Ccccccc
Q 015772 22 PTQE-DEDHHHH 32 (400)
Q Consensus 22 ~~~~-~~~~~~~ 32 (400)
+.+. +||||||
T Consensus 61 ~VgGG~~~~~~~ 72 (73)
T 2kl0_A 61 PRQGGLEHHHHH 72 (73)
T ss_dssp CCCCCCSCSSCC
T ss_pred cccCCccccccC
Confidence 4443 3444444
No 262
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=27.46 E-value=13 Score=30.51 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=0.0
Q ss_pred ccccccccc
Q 015772 28 DHHHHEDRQ 36 (400)
Q Consensus 28 ~~~~~~~~~ 36 (400)
||||||||+
T Consensus 5 ~~~~~~~~~ 13 (96)
T 1sg7_A 5 HHHHHHHHS 13 (96)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 344444443
No 263
>3slt_A Serine protease ESPP; beta barrel, membrane protein, asparagine cyclization, autoc protein transport; HET: C8E; 2.46A {Escherichia coli} PDB: 3slj_A* 3slo_A* 2qom_A
Probab=27.44 E-value=18 Score=34.71 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=13.7
Q ss_pred cccccccchHHHHHHHHhhcChhhhhc
Q 015772 29 HHHHEDRQTETAAAAAARLVDSAEIRR 55 (400)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (400)
||||||...|...++++-|.-...+.+
T Consensus 6 ~~~~~~~~~~~~~~~~s~~a~~~~~~~ 32 (313)
T 3slt_A 6 HHHHHHANKEATRNAAALFSVDYKAFL 32 (313)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhHhHhhhhHHHHH
Confidence 455555556666666666655444433
No 264
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=27.42 E-value=17 Score=36.31 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=2.2
Q ss_pred ccccccccchHHH
Q 015772 28 DHHHHEDRQTETA 40 (400)
Q Consensus 28 ~~~~~~~~~~~~~ 40 (400)
||||||-.....+
T Consensus 7 ~~~~~~~~~~~~a 19 (427)
T 1o20_A 7 HHHHHHMDELLEK 19 (427)
T ss_dssp -------CHHHHH
T ss_pred ccchhhhHHHHHH
Confidence 3333333333333
No 265
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.13 E-value=29 Score=28.25 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
.++..+..+|. .|- ....-.+||..||++...|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-----RGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46677777776 332 2234678999999999999888765444444
No 266
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=27.12 E-value=13 Score=30.13 Aligned_cols=10 Identities=50% Similarity=0.826 Sum_probs=0.0
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
.++|||||||
T Consensus 84 ~~~~~~~~~~ 93 (93)
T 2vt1_B 84 THLEHHHHHH 93 (93)
T ss_dssp ----------
T ss_pred ccccccccCC
Confidence 4566666664
No 267
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=26.89 E-value=14 Score=29.15 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=2.7
Q ss_pred CCCcCccccccc
Q 015772 22 PTQEDEDHHHHE 33 (400)
Q Consensus 22 ~~~~~~~~~~~~ 33 (400)
....-|||||||
T Consensus 82 ~~~~~~~~~~~~ 93 (93)
T 1k8m_A 82 ALKDLEHHHHHH 93 (93)
T ss_dssp CCTTTC------
T ss_pred CCcchhhhccCC
Confidence 344445555554
No 268
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=26.80 E-value=18 Score=28.16 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.5
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 80 ~~~~~~ 85 (86)
T 2k4y_A 80 EHHHHH 85 (86)
T ss_dssp CSCCCC
T ss_pred hhcccC
Confidence 444444
No 269
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=26.77 E-value=14 Score=29.04 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=0.0
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
.+-|||||||
T Consensus 67 ~~~~~~~~~~ 76 (76)
T 1vry_A 67 RLLEHHHHHH 76 (76)
T ss_dssp ----------
T ss_pred chhhhcccCC
Confidence 3445555554
No 270
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=26.68 E-value=15 Score=33.22 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=6.7
Q ss_pred HHHHc-CCCccceee
Q 015772 264 LAKQL-NLRPRQVEV 277 (400)
Q Consensus 264 LA~~L-gLserQVqv 277 (400)
+++.+ ++++..++.
T Consensus 222 ~~~~~~~~~~~~~~~ 236 (280)
T 1zbm_A 222 AMKYSRGLDRERAKR 236 (280)
T ss_dssp HGGGCTTCCHHHHHH
T ss_pred HHHHhccCCHHHHHH
Confidence 34444 565544443
No 271
>2zqk_M Putative translocated intimin receptor protein (translocated intimin receptor TIR)...; protein-protein complex; 2.80A {Escherichia coli} PDB: 2zwk_B 1f02_T
Probab=26.68 E-value=14 Score=28.47 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 71 ehhhhh 76 (77)
T 2zqk_M 71 EHHHHH 76 (77)
T ss_dssp ------
T ss_pred HhhccC
Confidence 344444
No 272
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=26.60 E-value=18 Score=29.33 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.7
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 93 ~~~~~~~ 99 (99)
T 2kjg_A 93 EHHHHHH 99 (99)
T ss_dssp SSCSSCC
T ss_pred hhcccCC
Confidence 5555554
No 273
>2jov_A Hypothetical protein CPE0013; alpha + beta sandwich, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens} SCOP: d.349.1.1
Probab=26.51 E-value=18 Score=28.99 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.5
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 79 ~~~~~~ 84 (85)
T 2jov_A 79 EHHHHH 84 (85)
T ss_dssp CCSSCC
T ss_pred hhhccC
Confidence 344443
No 274
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=26.29 E-value=14 Score=35.45 Aligned_cols=9 Identities=44% Similarity=1.003 Sum_probs=0.0
Q ss_pred cccccccch
Q 015772 29 HHHHEDRQT 37 (400)
Q Consensus 29 ~~~~~~~~~ 37 (400)
|||||||++
T Consensus 5 ~~~~~~~~~ 13 (337)
T 2qv7_A 5 HHHHHHHSS 13 (337)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 455555544
No 275
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=26.05 E-value=25 Score=29.67 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=6.5
Q ss_pred ccccccchHHHHHHHHh
Q 015772 30 HHHEDRQTETAAAAAAR 46 (400)
Q Consensus 30 ~~~~~~~~~~~~~~~~~ 46 (400)
|||||.+.+-..+++.-
T Consensus 4 ~~~~~~~~~~~~e~~~W 20 (126)
T 2l3g_A 4 HHHHHSHMNSAEQTVTW 20 (126)
T ss_dssp CTTSCCCCCHHHHHHHH
T ss_pred cccccCCHHHHHHHHHH
Confidence 33333333444444433
No 276
>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A
Probab=25.90 E-value=14 Score=38.08 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
+||||||||++-
T Consensus 4 ~~~~~~~~~~~~ 15 (471)
T 1eyb_A 4 HHHHHHHHHSSG 15 (471)
T ss_dssp ------------
T ss_pred cccccccccccC
Confidence 344444445443
No 277
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=25.82 E-value=19 Score=26.85 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.2
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 82 ~~~~~~~ 88 (88)
T 2ko1_A 82 EHHHHHH 88 (88)
T ss_dssp CCCCCCC
T ss_pred cccccCC
Confidence 4444443
No 278
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=25.81 E-value=41 Score=26.40 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=31.3
Q ss_pred CccCCHHHHHHHHHHHhhc--CCCCH-HHHHHHHHHcCCCccceeeccc
Q 015772 235 KLRLSKQQSAFLEESFKEH--TTLTP-KQKLALAKQLNLRPRQVEVWFQ 280 (400)
Q Consensus 235 RtrfT~~Ql~~LE~~F~~~--~yPs~-~~R~eLA~~LgLserQVqvWFQ 280 (400)
+..|+.++....-..+... .|.+. ....++|+++|++...|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4468888875554444322 13332 4577899999999999999964
No 279
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.64 E-value=23 Score=25.64 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~K 287 (400)
.++..+..+|...|-...+ ....-.++|..+|++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4678888888888732111 1123578999999999999988765555544
No 280
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=25.57 E-value=24 Score=27.74 Aligned_cols=11 Identities=55% Similarity=0.785 Sum_probs=5.8
Q ss_pred CCcCccccccc
Q 015772 23 TQEDEDHHHHE 33 (400)
Q Consensus 23 ~~~~~~~~~~~ 33 (400)
+-+-|||||||
T Consensus 67 ~~~i~~~~~~~ 77 (77)
T 2dw3_A 67 TGALEHHHHHH 77 (77)
T ss_dssp SCSCSSCCCCC
T ss_pred hhHHhhcccCC
Confidence 34455655554
No 281
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=25.46 E-value=19 Score=28.31 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.4
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 81 ~~~~~~~ 87 (87)
T 2kci_A 81 EHHHHHH 87 (87)
T ss_dssp CCCCCCC
T ss_pred hhcccCC
Confidence 4555543
No 282
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.43 E-value=1.1e+02 Score=22.26 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 015772 282 RRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR 320 (400)
Q Consensus 282 RRaK~Krkq~~~~~e~l~~~~e~L~~En~~l~~e~~~l~ 320 (400)
+|++.|++....+ |......|..+|..|..++..|.
T Consensus 14 ~k~R~rKk~~~~~---Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 14 SKSRKRKLERIAR---LEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
No 283
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=25.36 E-value=15 Score=34.30 Aligned_cols=20 Identities=10% Similarity=0.346 Sum_probs=12.9
Q ss_pred HHHHHHcCCCccceeecccc
Q 015772 262 LALAKQLNLRPRQVEVWFQN 281 (400)
Q Consensus 262 ~eLA~~LgLserQVqvWFQN 281 (400)
..+++.+++++..++.|+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~ 261 (321)
T 2x7q_A 242 EYISSNLDYSAEDAKEWTKT 261 (321)
T ss_dssp HHHHHHSSCCHHHHHHHHTT
T ss_pred HHHHHHhCcCHHHHHHHHhc
Confidence 34566677777677777654
No 284
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=25.19 E-value=15 Score=40.79 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=19.3
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHH
Q 015772 236 LRLSKQQSAFLEESFKEHTTLTPKQ 260 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~~~yPs~~~ 260 (400)
.+.+..|...|++.=.+.+|.....
T Consensus 334 q~v~~lqakalkkaQ~q~hrvn~~m 358 (1118)
T 3q23_A 334 VRNTPEQKAALKAEQATEFYVHTPM 358 (1118)
T ss_dssp EECCHHHHHHHHHHHHCCBEECHHH
T ss_pred ccCCHHHHHHHHHhhccCceecccH
Confidence 3689999999998877777766554
No 285
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.19 E-value=1.3e+02 Score=20.02 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHh
Q 015772 300 RCCETLTEENRRLQKELQELRALKS 324 (400)
Q Consensus 300 ~~~e~L~~En~~l~~e~~~l~al~~ 324 (400)
...+.|..+|..|+.|+.+|+.|..
T Consensus 8 ~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 8 XKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3467788899999999999988753
No 286
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=25.15 E-value=1.9 Score=42.56 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=20.3
Q ss_pred hccCCCcccccccCcccccccCCCCCC
Q 015772 54 RRCSTPTATAETANIIQQLDLLPNTPV 80 (400)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (400)
.-|.-| ++.+-+.||-=+|+||.++.
T Consensus 46 klCq~p-rlnLkNSPP~i~diLpdTy~ 71 (329)
T 3bux_B 46 RLCQNP-KLALKNSPPYILDLLPDTYQ 71 (329)
T ss_dssp HHHTCG-GGCCCSCSSCHHHHHHHHHH
T ss_pred HHhcCC-cccCCCCCccHHHHhHHHHH
Confidence 457766 56677888999999999874
No 287
>1p9h_A Invasin; collagen-binding, LEFT-handed beta-roll, cell adhesion; 1.55A {Yersinia enterocolitica} SCOP: b.81.3.1
Probab=25.13 E-value=15 Score=34.24 Aligned_cols=13 Identities=15% Similarity=-0.158 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHH
Q 015772 238 LSKQQSAFLEESF 250 (400)
Q Consensus 238 fT~~Ql~~LE~~F 250 (400)
....||..+....
T Consensus 194 vNv~QL~~~~~~~ 206 (226)
T 1p9h_A 194 VNVAQLKKEIEKT 206 (226)
T ss_dssp CCHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHH
Confidence 5667776655443
No 288
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=25.06 E-value=15 Score=29.07 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 82 ~~~~~~ 87 (88)
T 3jtz_A 82 EHHHHH 87 (88)
T ss_dssp ------
T ss_pred hhcccC
Confidence 333333
No 289
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=25.02 E-value=15 Score=29.72 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 92 ~~~~~~ 97 (98)
T 3pe9_A 92 EHHHHH 97 (98)
T ss_dssp ------
T ss_pred cccccC
Confidence 444444
No 290
>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 1.20A {Bacillus subtilis} SCOP: b.174.1.1
Probab=24.99 E-value=17 Score=28.27 Aligned_cols=10 Identities=60% Similarity=0.926 Sum_probs=0.4
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
.+-|||||||
T Consensus 71 ~~~~~~~~~~ 80 (80)
T 2dlb_A 71 PELEHHHHHH 80 (80)
T ss_dssp C---------
T ss_pred hhhhhcccCC
Confidence 3445555553
No 291
>2zi0_A Protein 2B, TAV2B; RNAI suppression, nucleus, suppressor of RNA silencing; 2.82A {Tomato aspermy virus} PDB: 3cz3_A
Probab=24.84 E-value=15 Score=28.33 Aligned_cols=10 Identities=60% Similarity=1.112 Sum_probs=0.0
Q ss_pred cCcccccccc
Q 015772 25 EDEDHHHHED 34 (400)
Q Consensus 25 ~~~~~~~~~~ 34 (400)
.||.||||||
T Consensus 66 ~~~~~~~~~~ 75 (75)
T 2zi0_A 66 SDEGHHHHHH 75 (75)
T ss_dssp ----------
T ss_pred ccccccccCC
Confidence 4666666654
No 292
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=24.65 E-value=16 Score=35.21 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=0.0
Q ss_pred ccccccccchHHHHH
Q 015772 28 DHHHHEDRQTETAAA 42 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~ 42 (400)
|||||||--+-|-+.
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (279)
T 3pkr_A 1 HHHHHHHMASMTGGQ 15 (279)
T ss_dssp ---------------
T ss_pred CCcchhHHHhhcccc
Confidence 455555555555443
No 293
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=24.61 E-value=16 Score=36.42 Aligned_cols=7 Identities=71% Similarity=1.403 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 28 DHHHHED 34 (400)
Q Consensus 28 ~~~~~~~ 34 (400)
|||||||
T Consensus 5 ~~~~~~~ 11 (477)
T 2vgq_A 5 HHHHHHD 11 (477)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4555554
No 294
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.56 E-value=1.9e+02 Score=21.23 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=28.4
Q ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 015772 289 KQTEVDCEYLKRCCETLTEENRRLQKELQELRALK 323 (400)
Q Consensus 289 kq~~~~~e~l~~~~e~L~~En~~l~~e~~~l~al~ 323 (400)
..++...+.|...+..|..+-..|+.++..|+.+.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667888999999999999999999888654
No 295
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=24.35 E-value=9.4 Score=35.25 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=6.0
Q ss_pred ccCCHHHHHHH
Q 015772 236 LRLSKQQSAFL 246 (400)
Q Consensus 236 trfT~~Ql~~L 246 (400)
..++..++..|
T Consensus 179 ~~i~~~e~~~~ 189 (244)
T 2brx_A 179 KKMKPEELLEI 189 (244)
T ss_dssp SEECHHHHHHH
T ss_pred eEECHHHHHHH
Confidence 34566655555
No 296
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=24.35 E-value=21 Score=26.83 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.6
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 75 ~~~~~~ 80 (81)
T 2htj_A 75 EHHHHH 80 (81)
T ss_dssp SCSSSC
T ss_pred hhhccC
Confidence 444444
No 297
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid}
Probab=24.24 E-value=13 Score=34.64 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=5.6
Q ss_pred ccccccchHHHHHHHHhhcChhhh
Q 015772 30 HHHEDRQTETAAAAAARLVDSAEI 53 (400)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~ 53 (400)
||||||.+-.+++|...||=..|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~vw~DeF 28 (234)
T 3i4i_A 5 HHHHHHGSGSIEGRNVFTHFGEGF 28 (234)
T ss_dssp ---------------CCCCEEECC
T ss_pred ccccccCCceeeccccCCeEeCCC
Confidence 444445556667777777755554
No 298
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=24.14 E-value=17 Score=28.58 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.4
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 79 ~~~~~~ 84 (85)
T 3rq9_A 79 EHHHHH 84 (85)
T ss_dssp C-----
T ss_pred hhcccC
Confidence 444444
No 299
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=23.98 E-value=16 Score=29.47 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=1.5
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 84 ~~~~~~~ 90 (90)
T 3lyw_A 84 EHHHHHH 90 (90)
T ss_dssp EEC----
T ss_pred eccccCC
Confidence 4555543
No 300
>2f99_A Aklanonic acid methyl ester cyclase, AKNH; anthracycline,polyketide cyclase,stereoselectivity, aklavino biosynthetic protein; HET: AKV; 1.90A {Streptomyces galilaeus} SCOP: d.17.4.9 PDB: 2f98_A*
Probab=23.96 E-value=18 Score=30.11 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=8.2
Q ss_pred ccccccccchHHHHHHHHhhcChhh
Q 015772 28 DHHHHEDRQTETAAAAAARLVDSAE 52 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (400)
||||||||+ ...+.+.++++-|.
T Consensus 3 ~~~~~~~~~--~~~~~v~~~~~a~~ 25 (153)
T 2f99_A 3 HHHHHHHRS--EQIAAVRRMVEAYN 25 (153)
T ss_dssp -------CC--HHHHHHHHHHHHHH
T ss_pred ccccchhhh--HHHHHHHHHHHHHh
Confidence 455555543 34455566666443
No 301
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.94 E-value=21 Score=27.91 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=3.8
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
-|||||||
T Consensus 88 ~~~~~~~~ 95 (95)
T 1uel_A 88 LEHHHHHH 95 (95)
T ss_dssp GGTCCCCC
T ss_pred ccccccCC
Confidence 35555543
No 302
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=23.85 E-value=22 Score=28.04 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.6
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 81 ~~~~~~ 86 (87)
T 2kyw_A 81 EHHHHH 86 (87)
T ss_dssp CCSSCC
T ss_pred cccccC
Confidence 444444
No 303
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=23.78 E-value=18 Score=28.05 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.9
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 83 ~~~~~~ 88 (89)
T 1z00_A 83 EHHHHH 88 (89)
T ss_dssp CC----
T ss_pred hhcccc
Confidence 444444
No 304
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=23.71 E-value=16 Score=30.37 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=3.3
Q ss_pred ecccchhh
Q 015772 277 VWFQNRRA 284 (400)
Q Consensus 277 vWFQNRRa 284 (400)
+=..|||.
T Consensus 66 ~~~K~rKt 73 (118)
T 2cmx_A 66 VQYKNRKT 73 (118)
T ss_dssp EEECSSCE
T ss_pred hhhccchH
Confidence 33344443
No 305
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.66 E-value=28 Score=26.72 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=34.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 236 LRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 236 trfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
..++..+..+|...|. .+ ...+||..||++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3588899999887543 22 24578999999999999988766655553
No 306
>2v7s_A Probable conserved lipoprotein LPPA; unknown function, putative lipoprotein; 1.96A {Mycobacterium tuberculosis}
Probab=23.50 E-value=17 Score=33.81 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=0.0
Q ss_pred ccccccccchHHHHHHHH
Q 015772 28 DHHHHEDRQTETAAAAAA 45 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~ 45 (400)
||||||-.+++--+-|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~ 22 (215)
T 2v7s_A 5 HHHHHHLESTSLYKKAGS 22 (215)
T ss_dssp ------------------
T ss_pred cccccccchhhHHHHHHH
Confidence 444444444444444443
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=23.42 E-value=17 Score=38.06 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 28 DHHHHEDR 35 (400)
Q Consensus 28 ~~~~~~~~ 35 (400)
||||||||
T Consensus 1 ~~~~~~~~ 8 (619)
T 3s94_A 1 HHHHHHHH 8 (619)
T ss_dssp --------
T ss_pred CCcccccc
Confidence 34444444
No 308
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=23.39 E-value=14 Score=29.87 Aligned_cols=19 Identities=5% Similarity=0.050 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHcCCCcc
Q 015772 255 TLTPKQKLALAKQLNLRPR 273 (400)
Q Consensus 255 yPs~~~R~eLA~~LgLser 273 (400)
.|+......||..||++..
T Consensus 62 ~ps~~~l~~ia~~l~v~~~ 80 (111)
T 3mlf_A 62 NIKDSLLSKYMSAFNVKYD 80 (111)
T ss_dssp TCCHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHhCcCHH
Confidence 3566666666666665543
No 309
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=23.34 E-value=12 Score=31.69 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=10.1
Q ss_pred HHHHHHHHcCCCccceeecc
Q 015772 260 QKLALAKQLNLRPRQVEVWF 279 (400)
Q Consensus 260 ~R~eLA~~LgLserQVqvWF 279 (400)
....|++.+++..--.-+.|
T Consensus 116 ~~~~l~~~~~v~~~Pt~~li 135 (165)
T 3s9f_A 116 IVEALTKKYSVESIPTLIGL 135 (165)
T ss_dssp HHHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEE
Confidence 33556666665444444444
No 310
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=23.34 E-value=17 Score=29.77 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 92 ~~~~~~~ 98 (98)
T 3oe3_A 92 EHHHHHH 98 (98)
T ss_dssp -------
T ss_pred cccccCC
Confidence 5555553
No 311
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.29 E-value=83 Score=25.45 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccceeecccchhhhhhh
Q 015772 237 RLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKL 288 (400)
Q Consensus 237 rfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~LgLserQVqvWFQNRRaK~Kr 288 (400)
.++..+..+|...|-.. ..-.++|..+|++...|+.++..-|.+.|+
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 46777777777665322 235789999999999999988766655553
No 312
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore, membrane, methylation, photoreceptor protein, receptor; NMR {Natronomonas pharaonis}
Probab=22.97 E-value=23 Score=25.77 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.7
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 62 ~~~~~~ 67 (68)
T 2rm8_A 62 EHHHHH 67 (68)
T ss_dssp TCCCCC
T ss_pred HhhccC
Confidence 444444
No 313
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=22.88 E-value=19 Score=26.15 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=0.9
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
-|||||||
T Consensus 45 ~~~~~~~~ 52 (52)
T 2klz_A 45 LEHHHHHH 52 (52)
T ss_dssp CC------
T ss_pred hhhcccCC
Confidence 35555553
No 314
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=22.84 E-value=18 Score=35.80 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC
Q 015772 238 LSKQQSAFLEESFKEHTTLTPKQKLALAKQLN 269 (400)
Q Consensus 238 fT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~Lg 269 (400)
-+.+|...|++.|.+. .....+|-..++
T Consensus 285 ~~~~~r~~L~~~~~~~----~~~vk~l~~~l~ 312 (368)
T 2q58_A 285 ADEEMKLKISENYGKN----SSLVKDCYNLLK 312 (368)
T ss_dssp CCHHHHHHHHHHTTTC----HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCC----HHHHHHHHHHHh
Confidence 3567777777766532 233444444443
No 315
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=22.75 E-value=18 Score=35.91 Aligned_cols=8 Identities=50% Similarity=1.057 Sum_probs=0.0
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
++|||||.
T Consensus 6 ~~~~~~~~ 13 (357)
T 4g1u_A 6 HHHHHHHS 13 (357)
T ss_dssp --------
T ss_pred cccccccC
Confidence 44555554
No 316
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=22.73 E-value=18 Score=28.18 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 86 ~~~~~~ 91 (92)
T 2k6p_A 86 EHHHHH 91 (92)
T ss_dssp ------
T ss_pred cccccC
Confidence 444444
No 317
>1l8w_A VLSE1; variable surface protein, VMP-like sequence, immune system; 2.30A {Borrelia burgdorferi} SCOP: a.154.1.1
Probab=22.72 E-value=18 Score=35.99 Aligned_cols=10 Identities=40% Similarity=0.906 Sum_probs=0.0
Q ss_pred cccccccchH
Q 015772 29 HHHHEDRQTE 38 (400)
Q Consensus 29 ~~~~~~~~~~ 38 (400)
||||||.+++
T Consensus 5 ~~~~~~~~~~ 14 (348)
T 1l8w_A 5 HHHHHHGSSQ 14 (348)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4444444443
No 318
>2kvt_A Uncharacterized protein YAIA; structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, NESG; NMR {Escherichia coli}
Probab=22.71 E-value=28 Score=26.55 Aligned_cols=10 Identities=60% Similarity=0.983 Sum_probs=5.5
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
.|-|||||||
T Consensus 62 k~~~~~~~~~ 71 (71)
T 2kvt_A 62 KELEHHHHHH 71 (71)
T ss_dssp SCCCSCGGGC
T ss_pred hhhhhhccCC
Confidence 3556666654
No 319
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=22.58 E-value=16 Score=38.13 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=0.9
Q ss_pred ccccccccchHHHHHHHHhhc
Q 015772 28 DHHHHEDRQTETAAAAAARLV 48 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (400)
||||||...-|.+-+|+-.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~ 22 (511)
T 3gg8_A 2 HHHHHHSSGRENLYFQGIRMS 22 (511)
T ss_dssp -------------------CT
T ss_pred Ccccccccccccccccccchh
Confidence 566666666678888876543
No 320
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=22.57 E-value=18 Score=35.64 Aligned_cols=7 Identities=57% Similarity=1.208 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 29 HHHHEDR 35 (400)
Q Consensus 29 ~~~~~~~ 35 (400)
|||||||
T Consensus 5 ~~~~~~~ 11 (393)
T 1wuf_A 5 HHHHHHH 11 (393)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 321
>3e8p_A Uncharacterized protein; X-RAY Q8E9M7 SOR246 NESG structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=22.55 E-value=30 Score=29.71 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=8.8
Q ss_pred cccccccccchHHHHHHHHhhcCh
Q 015772 27 EDHHHHEDRQTETAAAAAARLVDS 50 (400)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~ 50 (400)
+|||||.|-++-+-.+.+.+|.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~~~ 26 (164)
T 3e8p_A 3 HHHHHHSHMSNPIQAEVLKRVAEV 26 (164)
T ss_dssp ---------CCHHHHHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHH
Confidence 345555555666666666665443
No 322
>2jz5_A Uncharacterized protein VPA0419; GFT protein structure, NESG, structural genomics, unknown function, PSI-2; NMR {Vibrio parahaemolyticus rimd 2210633}
Probab=22.50 E-value=24 Score=28.62 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.2
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 85 ~~~~~~~ 91 (91)
T 2jz5_A 85 EHHHHHH 91 (91)
T ss_dssp CCCSSCC
T ss_pred hhcccCC
Confidence 4444443
No 323
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum}
Probab=22.44 E-value=24 Score=29.94 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=9.2
Q ss_pred cccccccchHHHHHHHHhhcC
Q 015772 29 HHHHEDRQTETAAAAAARLVD 49 (400)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~ 49 (400)
|||||..-..+..+.+..|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~ 28 (150)
T 2ig6_A 8 HHHHHENLYFQGMKRALEFLK 28 (150)
T ss_dssp CCGGGHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcCHHHHHHHHH
Confidence 333333333444444555554
No 324
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=22.37 E-value=18 Score=34.47 Aligned_cols=12 Identities=0% Similarity=0.235 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHH
Q 015772 239 SKQQSAFLEESF 250 (400)
Q Consensus 239 T~~Ql~~LE~~F 250 (400)
+++.-..|-..|
T Consensus 129 t~~~A~~lL~~Y 140 (280)
T 3b8m_A 129 TSEEAQTVLSGY 140 (280)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 455555554444
No 325
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=22.25 E-value=30 Score=30.33 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=6.9
Q ss_pred cccccccccchHHHHHHHHhhc
Q 015772 27 EDHHHHEDRQTETAAAAAARLV 48 (400)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~ 48 (400)
-||||||-|+.-....-..+|+
T Consensus 6 ~~~~~~~~~~~m~~~~R~~~Il 27 (187)
T 1j5y_A 6 IHHHHHHMHMKTVRQERLKSIV 27 (187)
T ss_dssp ---------CHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhhhHHHHHHHHH
Confidence 3667777777766554444444
No 326
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=22.12 E-value=20 Score=27.52 Aligned_cols=10 Identities=60% Similarity=0.870 Sum_probs=0.9
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
.|-|||||||
T Consensus 57 ~~~~~~~~~~ 66 (66)
T 1qxf_A 57 IELEHHHHHH 66 (66)
T ss_dssp CC--------
T ss_pred eeeeecccCC
Confidence 3556666654
No 327
>3eyr_A Uncharacterized lipoprotein YCEB; ER542 NESG X-RAY YCEB_COLI P0AB26, structural genomics, PSI- 2, protein structure initiative; 2.01A {Escherichia coli K12} PDB: 3l6i_A
Probab=22.04 E-value=20 Score=32.25 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcCC--CC--HHHHHHHHHHcC
Q 015772 241 QQSAFLEESFKEHTT--LT--PKQKLALAKQLN 269 (400)
Q Consensus 241 ~Ql~~LE~~F~~~~y--Ps--~~~R~eLA~~Lg 269 (400)
.-...|...|+..+- ++ ....+.|++++.
T Consensus 130 ~l~~~L~~~L~~~PVY~Ld~~~~~~eal~k~~~ 162 (178)
T 3eyr_A 130 YLNQALRNYFNQQPAYVLREDGSQGEAMAKKLA 162 (178)
T ss_dssp HHHHHHHHHHHHSCSEECCSSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCceEEECCccCHHHHHHHhhc
Confidence 334566677777773 33 333477888775
No 328
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=22.01 E-value=35 Score=27.26 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=7.5
Q ss_pred cccccccchHHHHHHHHhhc
Q 015772 29 HHHHEDRQTETAAAAAARLV 48 (400)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (400)
||||||-..+.+.+....++
T Consensus 7 ~~~~~~~~~~~i~~~l~~il 26 (100)
T 1vku_A 7 HHHHHHMERKKLIAKFVEIA 26 (100)
T ss_dssp ---CCTTHHHHHHHHHHHHH
T ss_pred hhhhhhccHHHHHHHHHHHH
Confidence 44444444444444444333
No 329
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=22.01 E-value=18 Score=27.89 Aligned_cols=11 Identities=45% Similarity=0.884 Sum_probs=2.6
Q ss_pred cccccccchHH
Q 015772 29 HHHHEDRQTET 39 (400)
Q Consensus 29 ~~~~~~~~~~~ 39 (400)
||||||.++|-
T Consensus 2 ~~~~~~~~~~~ 12 (69)
T 1ryq_A 2 HHHHHHGSSEK 12 (69)
T ss_dssp ---CBC---CE
T ss_pred ccccccCchhh
Confidence 55555555553
No 330
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=21.91 E-value=19 Score=35.20 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=0.0
Q ss_pred cccccccccchH
Q 015772 27 EDHHHHEDRQTE 38 (400)
Q Consensus 27 ~~~~~~~~~~~~ 38 (400)
.||||||||++-
T Consensus 4 ~~~~~~~~~~~~ 15 (310)
T 3tc3_A 4 HHHHHHHHHSSG 15 (310)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 344444444443
No 331
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=21.90 E-value=21 Score=29.02 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=3.1
Q ss_pred CcCcccccccc
Q 015772 24 QEDEDHHHHED 34 (400)
Q Consensus 24 ~~~~~~~~~~~ 34 (400)
..||.||||||
T Consensus 84 Kh~e~~~~~~~ 94 (94)
T 2kct_A 84 KCPLEHHHHHH 94 (94)
T ss_dssp SSCCC------
T ss_pred eCCCcccccCC
Confidence 45677777664
No 332
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=21.89 E-value=19 Score=28.34 Aligned_cols=10 Identities=60% Similarity=0.883 Sum_probs=0.0
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
-|-|||||||
T Consensus 78 ~~~~~~~~~~ 87 (87)
T 3hz7_A 78 VELEHHHHHH 87 (87)
T ss_dssp ----------
T ss_pred EeeeccccCC
Confidence 3556666654
No 333
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=21.80 E-value=25 Score=28.71 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.6
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 88 ~~~~~~ 93 (94)
T 2krx_A 88 EHHHHH 93 (94)
T ss_dssp TTCCCC
T ss_pred cccccC
Confidence 344444
No 334
>2nwt_A UPF0165 protein AF_2212; HOMO dimer protein, GFT structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: b.129.2.2
Probab=21.78 E-value=25 Score=27.09 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.6
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 63 ~~~~~~ 68 (69)
T 2nwt_A 63 EHHHHH 68 (69)
T ss_dssp CCCCCC
T ss_pred hhhccC
Confidence 344444
No 335
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=21.71 E-value=19 Score=28.62 Aligned_cols=8 Identities=63% Similarity=1.244 Sum_probs=0.0
Q ss_pred cccccccc
Q 015772 27 EDHHHHED 34 (400)
Q Consensus 27 ~~~~~~~~ 34 (400)
+|||||||
T Consensus 82 ~~~~~~~~ 89 (89)
T 1pk1_B 82 RDHHHHHH 89 (89)
T ss_dssp --------
T ss_pred cccccccC
Confidence 45555543
No 336
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=21.65 E-value=19 Score=35.83 Aligned_cols=31 Identities=39% Similarity=0.610 Sum_probs=0.0
Q ss_pred ccccccccchHHH----HHHHHhhcChhhhhccCC
Q 015772 28 DHHHHEDRQTETA----AAAAARLVDSAEIRRCST 58 (400)
Q Consensus 28 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 58 (400)
|||||||..--|. -|.|-|||.--.-.||.-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (355)
T 1hw4_A 3 HHHHHHDTDIPTTENLTFQGACRLVANCRDVRCRR 37 (355)
T ss_dssp -----------------------------------
T ss_pred ccccccCCCCCccccceehhhhhhhhcchhHHHHH
Confidence 5555555443332 367889998877778864
No 337
>1r17_A Fibrinogen-binding protein SDRG; SDRG, mscramm-ligand complex, SDRG-fibrinopeptide complex, cell adhesion; 1.86A {Staphylococcus epidermidis} SCOP: b.2.3.4 b.2.3.4 PDB: 1r19_A 2ral_A
Probab=21.63 E-value=16 Score=35.88 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=1.8
Q ss_pred ccccccccchHHHHHHHHhhc
Q 015772 28 DHHHHEDRQTETAAAAAARLV 48 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (400)
.||||||.+--.+++++.+=|
T Consensus 4 ~~~~~~~~~~~~~~~~~g~dV 24 (343)
T 1r17_A 4 SHHHHHHGSLVPRGSEQGSNV 24 (343)
T ss_dssp -----------------CCBC
T ss_pred cccccccCccCCcccccCCCC
Confidence 355555555555555555444
No 338
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=21.61 E-value=25 Score=28.76 Aligned_cols=8 Identities=50% Similarity=1.032 Sum_probs=3.2
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
|-.|||||
T Consensus 91 ~~~~~~~~ 98 (99)
T 2noc_A 91 KLEHHHHH 98 (99)
T ss_dssp CSCCSTTC
T ss_pred chhhhccC
Confidence 33344443
No 339
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A*
Probab=21.54 E-value=18 Score=35.05 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=12.7
Q ss_pred cccccccccchH----HHHHHHHhhcChhh
Q 015772 27 EDHHHHEDRQTE----TAAAAAARLVDSAE 52 (400)
Q Consensus 27 ~~~~~~~~~~~~----~~~~~~~~~~~~~~ 52 (400)
+|||||-|++.. |+++.++++-.-|.
T Consensus 3 ~~~~~~~~~~~~~~~~ta~~~~~~m~~G~N 32 (376)
T 3ayr_A 3 HHHHHHVDDDDKIRDISSKELIKEMNFGWN 32 (376)
T ss_dssp ----CTTCCTTCCCCCCHHHHGGGCCCEEE
T ss_pred ccccccccccCCCCCCCHHHHHHhcCCcEe
Confidence 456666666655 56666655544443
No 340
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=21.54 E-value=19 Score=29.48 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=12.1
Q ss_pred Cccceeecccchhhhhh
Q 015772 271 RPRQVEVWFQNRRARTK 287 (400)
Q Consensus 271 serQVqvWFQNRRaK~K 287 (400)
.+....|-+.|||.-.|
T Consensus 60 hpdecevq~knr~t~fk 76 (118)
T 2vqc_A 60 HPDECEVQYKNRKTTFK 76 (118)
T ss_dssp CTTTEEEEECSSCEEEE
T ss_pred CCchhheeecchhHHHH
Confidence 45667777889887654
No 341
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=21.53 E-value=27 Score=25.58 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=3.7
Q ss_pred cCccccccc
Q 015772 25 EDEDHHHHE 33 (400)
Q Consensus 25 ~~~~~~~~~ 33 (400)
.+..|||||
T Consensus 64 ~~~~~~~~~ 72 (73)
T 2kmm_A 64 KSLEHHHHH 72 (73)
T ss_dssp CCCCCSCSC
T ss_pred CCCcccccC
Confidence 333444443
No 342
>2lt9_A Protein SLC8A3; NCX, NCX3, NACA exchanger, CBD, CBD2, calcium binding domain binding protein; NMR {Mus musculus}
Probab=27.06 E-value=20 Score=31.69 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=9.0
Q ss_pred ccccccccchHHHHHHH
Q 015772 28 DHHHHEDRQTETAAAAA 44 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~ 44 (400)
|||||||..--|.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (157)
T 2lt9_A 4 HHHHHHHAGIFTFECDT 20 (157)
Confidence 55555555555554443
No 343
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=21.48 E-value=20 Score=34.01 Aligned_cols=8 Identities=13% Similarity=-0.031 Sum_probs=3.5
Q ss_pred HHHcCCCc
Q 015772 265 AKQLNLRP 272 (400)
Q Consensus 265 A~~LgLse 272 (400)
|..+|++-
T Consensus 324 a~a~G~P~ 331 (412)
T 3otg_A 324 ALGAGVPQ 331 (412)
T ss_dssp HHHHTCCE
T ss_pred HHHhCCCE
Confidence 34445443
No 344
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=21.48 E-value=33 Score=25.23 Aligned_cols=9 Identities=56% Similarity=0.948 Sum_probs=1.5
Q ss_pred cCccccccc
Q 015772 25 EDEDHHHHE 33 (400)
Q Consensus 25 ~~~~~~~~~ 33 (400)
-+|||||||
T Consensus 46 r~~~~~~~~ 54 (54)
T 2jvd_A 46 KLEHHHHHH 54 (54)
T ss_dssp TTC------
T ss_pred hhhhccccC
Confidence 455665554
No 345
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural genomics, unknown function; 2.52A {Pyrobaculum aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Probab=21.46 E-value=20 Score=31.07 Aligned_cols=7 Identities=71% Similarity=1.403 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 28 DHHHHED 34 (400)
Q Consensus 28 ~~~~~~~ 34 (400)
|||||||
T Consensus 5 ~~~~~~~ 11 (158)
T 1v8p_A 5 HHHHHHD 11 (158)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3344433
No 346
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=21.45 E-value=20 Score=36.50 Aligned_cols=9 Identities=44% Similarity=1.018 Sum_probs=0.0
Q ss_pred ccccccccc
Q 015772 28 DHHHHEDRQ 36 (400)
Q Consensus 28 ~~~~~~~~~ 36 (400)
||||||||.
T Consensus 1 ~~~~~~~~~ 9 (442)
T 4dou_A 1 HHHHHHHHE 9 (442)
T ss_dssp ---------
T ss_pred CCccccccc
Confidence 344444443
No 347
>2f4i_A Hypothetical protein TM0957; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 2.25A {Thermotoga maritima} SCOP: b.40.11.1
Probab=21.41 E-value=13 Score=34.08 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=5.3
Q ss_pred CcccccccccchHHHHHHHHhhcChhh
Q 015772 26 DEDHHHHEDRQTETAAAAAARLVDSAE 52 (400)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (400)
|.-||||||..-|+..-+.+..-.-|+
T Consensus 4 ~~~~~~~~~~~~~~~f~p~~ya~~iW~ 30 (197)
T 2f4i_A 4 DXIHHHHHHEEMEXGFDPXRYARELWF 30 (197)
T ss_dssp ---------------CCHHHHHHHHHH
T ss_pred cccccccchhhhhcCCCHHHHHHHhhh
Confidence 344555666555655444443334455
No 348
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.35 E-value=26 Score=27.89 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=4.1
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
-|||||||
T Consensus 75 ~~~~~~~~ 82 (82)
T 2l02_A 75 LEHHHHHH 82 (82)
T ss_dssp CSCCCCCC
T ss_pred ccccccCC
Confidence 35555554
No 349
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=21.33 E-value=20 Score=36.22 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=10.4
Q ss_pred cCCCccceeecccc
Q 015772 268 LNLRPRQVEVWFQN 281 (400)
Q Consensus 268 LgLserQVqvWFQN 281 (400)
+||.+..+.+|+|.
T Consensus 171 ~GlDp~k~~i~~qs 184 (406)
T 3tze_A 171 LGFDPKLTYIFSNV 184 (406)
T ss_dssp TTCCGGGEEEEEHH
T ss_pred cCCCccceEEEecc
Confidence 58888888887654
No 350
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=21.25 E-value=27 Score=26.40 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.7
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 56 ~~~~~~ 61 (62)
T 2l09_A 56 EHHHHH 61 (62)
T ss_dssp CCSCCC
T ss_pred hhcccC
Confidence 444444
No 351
>2fsd_A RBP, putative baseplate protein; lactococcus lactis, receptor binding protein, head domain, viral protein; 2.30A {Unidentified phage}
Probab=21.23 E-value=20 Score=30.33 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=0.0
Q ss_pred ccccccccchHHHHHHHHh
Q 015772 28 DHHHHEDRQTETAAAAAAR 46 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~ 46 (400)
||||||-.+++--..|.++
T Consensus 5 hhhhhhlestslykkags~ 23 (142)
T 2fsd_A 5 HHHHHHLESTSLYKKAGSE 23 (142)
T ss_dssp -------------------
T ss_pred cccccccchhhhhhhcCcc
Confidence 5555555566655555544
No 352
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=21.22 E-value=20 Score=32.06 Aligned_cols=7 Identities=71% Similarity=1.403 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 28 DHHHHED 34 (400)
Q Consensus 28 ~~~~~~~ 34 (400)
|||||||
T Consensus 3 ~~~~~~~ 9 (236)
T 1q3t_A 3 HHHHHHD 9 (236)
T ss_dssp -------
T ss_pred ccccccC
Confidence 3444443
No 353
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=21.22 E-value=27 Score=26.48 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.2
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 57 ~~~~~~~ 63 (63)
T 2kru_A 57 EHHHHHH 63 (63)
T ss_dssp CCCCCCC
T ss_pred hhccccC
Confidence 4444443
No 354
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=21.08 E-value=20 Score=28.67 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=0.0
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 81 ~~~~~~~ 87 (87)
T 3p04_A 81 EHHHHHH 87 (87)
T ss_dssp -------
T ss_pred eecccCC
Confidence 4444443
No 355
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=21.03 E-value=20 Score=27.70 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 64 ~~~~~~ 69 (70)
T 2k5k_A 64 EHHHHH 69 (70)
T ss_dssp ------
T ss_pred hhhccc
Confidence 444444
No 356
>2l92_A Histone family protein nucleoid-structuring prote; H-NS, at HOOK, DNA binding protein; NMR {Burkholderia vietnamiensis}
Probab=20.96 E-value=21 Score=25.88 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.4
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 44 ~~~~~~ 49 (50)
T 2l92_A 44 EHHHHH 49 (50)
T ss_dssp C-----
T ss_pred hhhccc
Confidence 444444
No 357
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=20.90 E-value=20 Score=31.48 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=0.0
Q ss_pred ccccccchHHH
Q 015772 30 HHHEDRQTETA 40 (400)
Q Consensus 30 ~~~~~~~~~~~ 40 (400)
||||||++--.
T Consensus 5 ~~~~~~~~~~~ 15 (228)
T 2qu8_A 5 HHHHHHSSGRE 15 (228)
T ss_dssp -----------
T ss_pred cccccccccch
Confidence 44444444433
No 358
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=20.86 E-value=30 Score=33.40 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=12.1
Q ss_pred cccccccccchHHHHHHHHhhcChhhhh
Q 015772 27 EDHHHHEDRQTETAAAAAARLVDSAEIR 54 (400)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (400)
+|||||.|.--+.+.++..+++....++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~l~~~~v~ 32 (326)
T 1hsk_A 5 HHHHHHTDPINKDIYQALQQLIPNEKIK 32 (326)
T ss_dssp ----------CHHHHHHHHHHSCGGGEE
T ss_pred ccccccCCcchHHHHHHHHHhcCcccee
Confidence 4555555666677777777777754444
No 359
>3jsb_A Protein L, RNA-directed RNA polymerase; viral protein, vizier, structural genomics, marseilles struc genomics program @ AFMB; 2.13A {Lymphocytic choriomeningitis virus}
Probab=20.84 E-value=36 Score=31.18 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=8.4
Q ss_pred ccccccccchHHHHHHHHhhc
Q 015772 28 DHHHHEDRQTETAAAAAARLV 48 (400)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~ 48 (400)
|||||||.--+.+..-..|-|
T Consensus 3 ~~~~~~~~~~~elkdLvrk~v 23 (204)
T 3jsb_A 3 HHHHHHDEIISELRELCLNYI 23 (204)
T ss_dssp ----CHHHHHHHHHHHHHHHS
T ss_pred ccccchHHHHHHHHHHHHHhC
Confidence 566666655554444444443
No 360
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.81 E-value=1.4e+02 Score=23.23 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=32.1
Q ss_pred hhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 015772 284 ARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRAL 322 (400)
Q Consensus 284 aK~Krkq~~~~~e~l~~~~e~L~~En~~l~~e~~~l~al 322 (400)
.|.|-.......+.|...+..|..+...|..|+..|+.|
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778888899999999999999999998888754
No 361
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=20.79 E-value=32 Score=27.64 Aligned_cols=14 Identities=43% Similarity=0.712 Sum_probs=3.9
Q ss_pred CCCCCcCccccccc
Q 015772 20 RKPTQEDEDHHHHE 33 (400)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (400)
+++...-|||||||
T Consensus 75 ~~~~~~~~~~~~~~ 88 (88)
T 2jvw_A 75 HKERNQLEHHHHHH 88 (88)
T ss_dssp TSCCCCCC------
T ss_pred hhhhhhhhhccccC
Confidence 34444556666554
No 362
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=20.77 E-value=30 Score=26.73 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=4.1
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
++||||||
T Consensus 64 ~~~~~~~~ 71 (71)
T 2ks0_A 64 LEHHHHHH 71 (71)
T ss_dssp CTTCCCCC
T ss_pred CcccccCC
Confidence 45555553
No 363
>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus}
Probab=20.76 E-value=22 Score=27.81 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=0.4
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 73 ~~~~~~~ 79 (79)
T 2k47_A 73 EHHHHHH 79 (79)
T ss_dssp C------
T ss_pred hhhcccC
Confidence 4454443
No 364
>4g9s_A Lysozyme G, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Salmo salar} PDB: 3mgw_A
Probab=20.76 E-value=26 Score=31.32 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=15.6
Q ss_pred hcCCCCHHHHHHHH-HHcCCCccceeecc
Q 015772 252 EHTTLTPKQKLALA-KQLNLRPRQVEVWF 279 (400)
Q Consensus 252 ~~~yPs~~~R~eLA-~~LgLserQVqvWF 279 (400)
+....+......|| ...|.-+..|+.|-
T Consensus 132 ~~~~~~~~g~~~~alAAYNaG~g~V~~~~ 160 (187)
T 4g9s_A 132 KFPVWPKEHQLKGGISAYNAGDKNVRTYE 160 (187)
T ss_dssp HSTTSCHHHHHHHHHHHHHHCGGGCCSSS
T ss_pred hcCCCCcCccHHHHHHHHccCchhHHhcc
Confidence 33444444454443 33566677888883
No 365
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=20.73 E-value=27 Score=28.55 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=2.6
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 91 ~~~~~~ 96 (97)
T 2k5r_A 91 EHHHHH 96 (97)
T ss_dssp CCCCCC
T ss_pred hhcccC
Confidence 444444
No 366
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.72 E-value=1.1e+02 Score=23.38 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=29.2
Q ss_pred CCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc-CCCccce
Q 015772 232 TRKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQL-NLRPRQV 275 (400)
Q Consensus 232 rRkRtrfT~~Ql~~LE~~F~~~~yPs~~~R~eLA~~L-gLserQV 275 (400)
+-.+..+|.++-..|+........-....=..||+.+ |=+..||
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qc 59 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDC 59 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHH
Confidence 3346679999999999888765433444455678777 3444444
No 367
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=20.66 E-value=22 Score=28.12 Aligned_cols=10 Identities=60% Similarity=0.926 Sum_probs=0.4
Q ss_pred CcCccccccc
Q 015772 24 QEDEDHHHHE 33 (400)
Q Consensus 24 ~~~~~~~~~~ 33 (400)
.|-|||||||
T Consensus 76 p~~~~~~~~~ 85 (85)
T 3h43_A 76 PELEHHHHHH 85 (85)
T ss_dssp C---------
T ss_pred hhhhhhccCC
Confidence 4556666654
No 368
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=20.56 E-value=28 Score=27.42 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=3.9
Q ss_pred Cccccccc
Q 015772 26 DEDHHHHE 33 (400)
Q Consensus 26 ~~~~~~~~ 33 (400)
-|||||||
T Consensus 70 ~~~~~~~~ 77 (77)
T 2l01_A 70 LEHHHHHH 77 (77)
T ss_dssp SSCCCCCC
T ss_pred ccccccCC
Confidence 34555543
No 369
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.55 E-value=21 Score=28.32 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 77 ~~~~~~ 82 (83)
T 2xdj_A 77 EHHHHH 82 (83)
T ss_dssp ------
T ss_pred HhhccC
Confidence 444444
No 370
>1zxj_A MPN555, hypothetical protein Mg377 homolog; mostly alpha helical protein, TRI-lobal structure, structural genomics, PSI; 2.80A {Mycoplasma pneumoniae}
Probab=20.52 E-value=22 Score=33.02 Aligned_cols=7 Identities=71% Similarity=1.403 Sum_probs=0.5
Q ss_pred ccccccc
Q 015772 28 DHHHHED 34 (400)
Q Consensus 28 ~~~~~~~ 34 (400)
|||||||
T Consensus 5 ~~~~~~~ 11 (218)
T 1zxj_A 5 HHHHHHD 11 (218)
T ss_dssp ------C
T ss_pred ccccccc
Confidence 4555544
No 371
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A*
Probab=20.42 E-value=21 Score=34.54 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=6.7
Q ss_pred HHHhhcChhhhhcc
Q 015772 43 AAARLVDSAEIRRC 56 (400)
Q Consensus 43 ~~~~~~~~~~~~~~ 56 (400)
.+.+++.+.|..|+
T Consensus 45 ~~~~~Ls~~E~~r~ 58 (323)
T 2c43_A 45 LAVRSIQPEEKERI 58 (323)
T ss_dssp HHHHTSCHHHHHHH
T ss_pred HHHccCCHHHHHHH
Confidence 34445555554444
No 372
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=20.33 E-value=23 Score=29.23 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=4.0
Q ss_pred cccccccchHHHHHHHHhh
Q 015772 29 HHHHEDRQTETAAAAAARL 47 (400)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~ 47 (400)
||||||.+.+-....-.||
T Consensus 3 ~~~~~~~~~~evEe~l~RI 21 (106)
T 2hz5_A 3 HHHHHHGSMAEVEETLKRL 21 (106)
T ss_dssp ------------CHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH
Confidence 5555555555555555555
No 373
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=20.28 E-value=27 Score=25.74 Aligned_cols=7 Identities=71% Similarity=1.350 Sum_probs=3.3
Q ss_pred ccccccc
Q 015772 27 EDHHHHE 33 (400)
Q Consensus 27 ~~~~~~~ 33 (400)
|||||||
T Consensus 52 ~~~~~~~ 58 (58)
T 3rnm_E 52 EHHHHHH 58 (58)
T ss_dssp GGGSCCC
T ss_pred hhcccCC
Confidence 4455443
No 374
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.27 E-value=1.4e+02 Score=19.83 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHh
Q 015772 301 CCETLTEENRRLQKELQELRALKS 324 (400)
Q Consensus 301 ~~e~L~~En~~l~~e~~~l~al~~ 324 (400)
..+.|..+|..|+.|+.+|+.|..
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 367788899999999999998743
No 375
>3t0j_A Impase II, inositol monophosphatase family protein; FIG superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus aureus}
Probab=20.14 E-value=25 Score=33.58 Aligned_cols=7 Identities=43% Similarity=0.766 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 015772 75 LPNTPVV 81 (400)
Q Consensus 75 ~~~~~~~ 81 (400)
.|..++.
T Consensus 65 ~P~~~il 71 (283)
T 3t0j_A 65 YPNHQVL 71 (283)
T ss_dssp CTTCEEE
T ss_pred CCCCEEE
Confidence 4655554
No 376
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=20.10 E-value=23 Score=31.34 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=0.0
Q ss_pred ccccccccchH
Q 015772 28 DHHHHEDRQTE 38 (400)
Q Consensus 28 ~~~~~~~~~~~ 38 (400)
||||||||++-
T Consensus 4 ~~~~~~~~~~~ 14 (159)
T 1op4_A 4 HHHHHHHHSSG 14 (159)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 44445555543
No 377
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=20.04 E-value=22 Score=27.81 Aligned_cols=6 Identities=83% Similarity=1.553 Sum_probs=0.0
Q ss_pred cccccc
Q 015772 27 EDHHHH 32 (400)
Q Consensus 27 ~~~~~~ 32 (400)
||||||
T Consensus 82 ~~~~~~ 87 (88)
T 2yh9_A 82 EHHHHH 87 (88)
T ss_dssp ------
T ss_pred cccccC
Confidence 444444
Done!