BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015773
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/383 (58%), Positives = 288/383 (75%), Gaps = 5/383 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMW 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FT ++LQD F VPLVIQ+TDDEK +W
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLW 203
Query: 135 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKV 192
K+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 204 KDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQV 263
Query: 193 VGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDV 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDV
Sbjct: 264 KGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 323
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQES 312
APRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG+++
Sbjct: 324 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDT 383
Query: 313 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
+E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+
Sbjct: 384 IEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIA 443
Query: 373 RHQVARAAVTDEMVDAFMAVRPL 395
HQ R VTDE+V FM R L
Sbjct: 444 EHQARRKEVTDEIVKEFMTPRKL 466
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/383 (58%), Positives = 288/383 (75%), Gaps = 5/383 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N
Sbjct: 4 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMN 63
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMW 134
+LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FT ++LQD F VPLVIQ+TDDEK +W
Sbjct: 64 QVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLW 122
Query: 135 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKV 192
K+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V
Sbjct: 123 KDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQV 182
Query: 193 VGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDV 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDV
Sbjct: 183 KGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 242
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQES 312
APRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG+++
Sbjct: 243 APRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDT 302
Query: 313 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
+E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+
Sbjct: 303 IEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIA 362
Query: 373 RHQVARAAVTDEMVDAFMAVRPL 395
HQ R VTDE+V FM R L
Sbjct: 363 EHQARRKEVTDEIVKEFMTPRKL 385
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 283/374 (75%), Gaps = 3/374 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQ 143
+ FYLYTGRGPSSEA+H+GHL+PF+FT ++LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAY 119
Query: 144 RLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGE 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT
Sbjct: 120 SYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDS 179
Query: 202 DHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 261
D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KP
Sbjct: 180 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKP 239
Query: 262 ALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGA 321
AL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G
Sbjct: 240 ALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGG 299
Query: 322 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 381
N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ R V
Sbjct: 300 NCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEV 359
Query: 382 TDEMVDAFMAVRPL 395
TDE+V FM R L
Sbjct: 360 TDEIVKEFMTPRKL 373
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 283/374 (75%), Gaps = 3/374 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQ 143
+ FYLYTGRGPSSEA+H+GHL+PF+FT ++LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAY 119
Query: 144 RLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGE 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT
Sbjct: 120 SYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDS 179
Query: 202 DHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 261
D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KP
Sbjct: 180 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKP 239
Query: 262 ALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGA 321
AL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G
Sbjct: 240 ALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGG 299
Query: 322 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 381
N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ R V
Sbjct: 300 NCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEV 359
Query: 382 TDEMVDAFMAVRPL 395
TDE+V FM R L
Sbjct: 360 TDEIVKEFMTPRKL 373
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 468 bits (1205), Expect = e-132, Method: Compositional matrix adjust.
Identities = 219/374 (58%), Positives = 283/374 (75%), Gaps = 3/374 (0%)
Query: 24 SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83
S+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD+N +LDAYE
Sbjct: 1 SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENK 60
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQ 143
+ FYLYTGRGPSSEA+H+GHL+PF+FT ++LQD F VPLVIQ+TDDEK +WK+L+++++
Sbjct: 61 KPFYLYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAY 119
Query: 144 RLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGE 201
A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N+V GIFGFT
Sbjct: 120 SYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDS 179
Query: 202 DHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 261
D IGK+SFP +QA + ++CLIPCAIDQDPYFRMTRDVAPRIGY KP
Sbjct: 180 DCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKP 239
Query: 262 ALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGA 321
AL+ S+FFPALQG KMSASDPNS+I++TD+ +AFSGG++++E HR+ G
Sbjct: 240 ALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGG 299
Query: 322 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 381
N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL L+ HQ R V
Sbjct: 300 NCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEV 359
Query: 382 TDEMVDAFMAVRPL 395
TDE+V FM R L
Sbjct: 360 TDEIVKEFMTPRKL 373
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/383 (57%), Positives = 280/383 (73%), Gaps = 5/383 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMW 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FT ++LQD F VPLVIQ TDDEK +W
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFT-KWLQDVFNVPLVIQXTDDEKYLW 203
Query: 135 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKV 192
K+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 204 KDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQV 263
Query: 193 VGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDV 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDV
Sbjct: 264 KGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDV 323
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQES 312
APRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG+++
Sbjct: 324 APRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDT 383
Query: 313 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
+E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL L+
Sbjct: 384 IEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIA 443
Query: 373 RHQVARAAVTDEMVDAFMAVRPL 395
HQ R VTDE+V F R L
Sbjct: 444 EHQARRKEVTDEIVKEFXTPRKL 466
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/383 (57%), Positives = 280/383 (73%), Gaps = 5/383 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 85 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 144
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMW 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FT ++LQD F VPLVIQ TDDEK +W
Sbjct: 145 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFT-KWLQDVFNVPLVIQXTDDEKYLW 203
Query: 135 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKV 192
K+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 204 KDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQV 263
Query: 193 VGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDV 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDV
Sbjct: 264 KGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDV 323
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQES 312
APRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG+++
Sbjct: 324 APRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDT 383
Query: 313 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
+E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL L+
Sbjct: 384 IEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIA 443
Query: 373 RHQVARAAVTDEMVDAFMAVRPL 395
HQ R VTDE+V F R L
Sbjct: 444 EHQARRKEVTDEIVKEFXTPRKL 466
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 220/383 (57%), Positives = 280/383 (73%), Gaps = 5/383 (1%)
Query: 17 VSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HRD N
Sbjct: 38 VDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDXN 97
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMW 134
+LDAYE + FYLYTGRGPSSEA H+GHL+PF+FT ++LQD F VPLVIQ TDDEK +W
Sbjct: 98 QVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFT-KWLQDVFNVPLVIQXTDDEKYLW 156
Query: 135 KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYNKV 192
K+L+++++ A ENAKDIIACGFD+ KTFIFSD DY G FYKN+VK+ K VT+N+V
Sbjct: 157 KDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYXGXSSGFYKNVVKIQKHVTFNQV 216
Query: 193 VGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDV 252
GIFGFT D IGK+SFP +QA + ++CLIPCAIDQDPYFR TRDV
Sbjct: 217 KGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRXTRDV 276
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQES 312
APRIGY KPAL+ S+FFPALQG K SASDPNS+I++TD+ +AFSGG+++
Sbjct: 277 APRIGYPKPALLHSTFFPALQGAQTKXSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDT 336
Query: 313 VELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
+E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G LTGE+K+ L +VL L+
Sbjct: 337 IEEHRQFGGNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIA 396
Query: 373 RHQVARAAVTDEMVDAFMAVRPL 395
HQ R VTDE+V F R L
Sbjct: 397 EHQARRKEVTDEIVKEFXTPRKL 419
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 260/374 (69%), Gaps = 5/374 (1%)
Query: 19 PWEVSSSGK--IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
PWEV + IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD I
Sbjct: 6 PWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKI 65
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK- 135
LD YEKGE FYLYTGRGPSSE+LH+GHLVPF+FT +YLQD FKVPLVIQLTDDEK ++K
Sbjct: 66 LDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFT-KYLQDTFKVPLVIQLTDDEKFIFKS 124
Query: 136 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 195
NL++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ +++ I
Sbjct: 125 NLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKISCSQIKSI 183
Query: 196 FGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPR 255
FGF ++GK +FP VQA G+ + CL+P AIDQDPYFRM RDVAPR
Sbjct: 184 FGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPR 243
Query: 256 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVEL 315
+GY KP+ I S F P+LQG KMSAS NS+I+V D+ YAFSGGQ + E
Sbjct: 244 LGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEE 303
Query: 316 HRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 375
R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+K L + L +L + HQ
Sbjct: 304 QRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQ 363
Query: 376 VARAAVTDEMVDAF 389
R A+ D+++ F
Sbjct: 364 KNREAINDDVIAKF 377
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/379 (51%), Positives = 263/379 (69%), Gaps = 6/379 (1%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+FF+HRDLN
Sbjct: 11 VVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNL 68
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK 135
+LD YE G+ FYLYTGRGPSSE++H+GHL+PFMFT ++LQD+F+VPLVIQ+TDDEK ++
Sbjct: 69 LLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFT-KWLQDSFRVPLVIQMTDDEKFYFR 127
Query: 136 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 195
N+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ + T ++V G
Sbjct: 128 NIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAFTASQVRGC 186
Query: 196 FGFTGEDHIGKVSFPPVQAV-XXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAP 254
FGF ED+ G+ FP +QA ++ CLIP AIDQDPYFR+TRD+AP
Sbjct: 187 FGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAP 246
Query: 255 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVE 314
R+GY KPA+I S FFP L G GKMS+S +A+ +TD+ +AFSGG + +
Sbjct: 247 RLGYLKPAVIHSKFFPGLSGPKGKMSSSS-GTAVLLTDTEKMVKDKINKHAFSGGGATKQ 305
Query: 315 LHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 374
H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGEVK+ L +T + + H
Sbjct: 306 EHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTH 365
Query: 375 QVARAAVTDEMVDAFMAVR 393
Q R VTDE V F + R
Sbjct: 366 QEKRKLVTDEDVQLFTSTR 384
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/388 (48%), Positives = 260/388 (67%), Gaps = 9/388 (2%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FT ++LQ+ F VPLVI+LTD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFT-KWLQEVFDVPLVIELTD 144
Query: 129 DEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 187
DEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +
Sbjct: 145 DEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQI 204
Query: 188 TYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFR 247
T + +FGF D IGK F +Q D CLIPCAIDQDPYFR
Sbjct: 205 TGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFR 264
Query: 248 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFS 307
+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ YAFS
Sbjct: 265 VCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFS 324
Query: 308 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 367
GGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+K+ + L
Sbjct: 325 GGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETL 384
Query: 368 TELVERHQVARAAVTDEMVDAFMAVRPL 395
E V+ Q RA V +E +D FM L
Sbjct: 385 QEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/388 (48%), Positives = 260/388 (67%), Gaps = 9/388 (2%)
Query: 16 VVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
VV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G+FF
Sbjct: 26 VVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFF 85
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTD 128
+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FT ++LQ+ F VPLVI+LTD
Sbjct: 86 SERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFT-KWLQEVFDVPLVIELTD 144
Query: 129 DEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 187
DEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++ +
Sbjct: 145 DEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQI 204
Query: 188 TYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFR 247
T + +FGF D IGK F +Q D CLIPCAIDQDPYFR
Sbjct: 205 TGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFR 264
Query: 248 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFS 307
+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ YAFS
Sbjct: 265 VCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFS 324
Query: 308 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVL 367
GGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G +L+GE+K+ + L
Sbjct: 325 GGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETL 384
Query: 368 TELVERHQVARAAVTDEMVDAFMAVRPL 395
E V+ Q RA V +E +D FM L
Sbjct: 385 QEFVKAFQERRAQVDEETLDKFMVPHKL 412
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 343 bits (880), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 164/382 (42%), Positives = 249/382 (65%), Gaps = 11/382 (2%)
Query: 17 VSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAH 70
++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+ FAH
Sbjct: 27 ITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAH 86
Query: 71 RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDE 130
RD N +LD FYLYTGRGPSS+ +H+GH +PF+ +Y+QDAFK+ LVIQ+TDDE
Sbjct: 87 RDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLC-KYMQDAFKIRLVIQITDDE 145
Query: 131 KCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYN 190
K +WK++ +E++ REN KDI+ GFD T+IFS+ + F +N++K++K + N
Sbjct: 146 KFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVE-ASHHFEENILKISKTINLN 204
Query: 191 KVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTR 250
+ + +FGF +IG+V FP + G CL+P A+DQDP+FR+ R
Sbjct: 205 EAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQDPFFRLAR 261
Query: 251 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQ 310
D A +G KP+ I S P L+G KMSASDPNS+IY+ D+ YA+SGG+
Sbjct: 262 DKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGR 321
Query: 311 ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 370
+++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E+K++ V+ E
Sbjct: 322 KTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEF 381
Query: 371 VERHQVARAAVTDEMVDAFMAV 392
V R+Q +R VTD+ + AF+ +
Sbjct: 382 VSRYQESRKRVTDDDLRAFIDI 403
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 281 bits (718), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 170/417 (40%), Positives = 221/417 (52%), Gaps = 59/417 (14%)
Query: 33 LIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92
+I +FG + L+ R + +TG H LRRG+F+AHRD + L YEKG Y+YTGR
Sbjct: 39 IITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGR 98
Query: 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAK 151
GPSS ALHLGHL+PF+FT +YLQDAFK +VIQ+TDDEK + ++LS E REN K
Sbjct: 99 GPSSGALHLGHLLPFIFT-KYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIK 157
Query: 152 DIIACGFDVTK---------------------------------TFIFSDFDYVGGAFY- 177
DIIACGFD K +F FS+ VG A +
Sbjct: 158 DIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFP 217
Query: 178 -KNMVKVAKC----VTYNKVVGIFGFTGEDHIGKVS--------------FPPVQAVXXX 218
K M+ V + + +V G ED VS PV V
Sbjct: 218 PKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEEL 277
Query: 219 XXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 278
CLI I+QDPYFR+ RD+APR+G+ K A + F P LQG K
Sbjct: 278 FPDSKRYQKAM----CLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTK 333
Query: 279 MSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED 338
MSASDPNSAIY+TD+ YAFSGG+++ E HR GA+L VD+ V+YL F++D
Sbjct: 334 MSASDPNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKD 393
Query: 339 DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 395
DAELE +K +Y G +LTGEVK L +L L++ H R V M+++F + L
Sbjct: 394 DAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 270 bits (690), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 149/375 (39%), Positives = 219/375 (58%), Gaps = 19/375 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK- 135
L YE+G F+LYTGRGPS +H+GH++PF F ++LQ+ F V L IQ+TDDEK ++K
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPF-FATKWLQEKFGVNLYIQITDDEKFLFKE 122
Query: 136 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 195
NL+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +
Sbjct: 123 NLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAV 180
Query: 196 FGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPR 255
FGFT + IG + FP +Q + RCLIP AIDQDPY+R+ RD A
Sbjct: 181 FGFTEQSKIGMIFFPAIQIAPTFF----------ERKRCLIPAAIDQDPYWRLQRDFAES 230
Query: 256 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVEL 315
+GY+K A + S F P+L +GKMSAS P +AIY+TDS + +GG+ +++
Sbjct: 231 LGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKE 290
Query: 316 HRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH 374
R+ G E + K+L FF EDD +L+ G + GE K+ L + E ++ H
Sbjct: 291 QREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEH 350
Query: 375 QVARAAVTDEMVDAF 389
Q R +++V+ F
Sbjct: 351 QRRRKKA-EKLVEKF 364
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 190/363 (52%), Gaps = 6/363 (1%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DY++LI+ G + + R+++L+G+ PH +L RGVF A + L+ LD E + ++
Sbjct: 26 DYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFI 85
Query: 89 YTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARE 148
+ + P E + L + F RYLQDAF + ++IQ+ DD K + + ++ E+ +++ +
Sbjct: 86 FIQKYPQKE-VALEEYITLEFA-RYLQDAFNIQVIIQILDDIKVLNREATINEASKMSND 143
Query: 149 NAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVS 208
K I+A GF+ KTFI++D+ Y G Y+ + V K YN V F F D+IGK++
Sbjct: 144 LMKYILAFGFNEDKTFIYTDYQYFGK-MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLA 202
Query: 209 FPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 268
P + RCL+ +I + + +A + + +P ++
Sbjct: 203 SPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKM 260
Query: 269 FPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIP 328
P L G T SD NS I ++D+ AFSGG+ + E H+KLG ++D+
Sbjct: 261 VPLLSGVTKFDIPSDHNS-ILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVS 319
Query: 329 VKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDA 388
+ L+ F D+A+++ ++++Y G +L+GE+K+ ++ + + + + + +T + A
Sbjct: 320 FQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKA 379
Query: 389 FMA 391
+++
Sbjct: 380 YIS 382
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 165/355 (46%), Gaps = 25/355 (7%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 147
TG PS + H GH + ++ FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 148 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGK 206
E ++IA G D T + F G Y ++++ + VT ++ I+ GE K
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIY---GELTPAK 185
Query: 207 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG----YHKPA 262
+ QA G H+ ++P DQDP+ R+TRD+A R+ +PA
Sbjct: 186 MMASLTQAA-DILHVQLDEYGGYRHV--VVPVGADQDPHLRLTRDLADRMAGVVELERPA 242
Query: 263 LIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGAN 322
P L G KMS+S P+S I++TD A +GG+ + E R+LG
Sbjct: 243 STYHKLQPGLDGR--KMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGV 299
Query: 323 LEVDIPVKYLSFF--LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 375
EV V ++ + + DD E++HI G +L GE KQ + L + HQ
Sbjct: 300 PEV-CSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVE 140
E EK Y G PS E +HLGH++ + F++ ++ L D + + + E
Sbjct: 28 ETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEAGFEI--IVLLADIHAYLNEKGTFE 84
Query: 141 ESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIF 196
E +A N K IA G D ++ F+ + + +++K+A+ T N+ +
Sbjct: 85 EIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEV 144
Query: 197 GFTGED-HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRC-LIPCAIDQDPYFRMTRDVAP 254
ED + ++ +P +QA+ HL L IDQ + R+ P
Sbjct: 145 SRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGIDQRKIHMLARENLP 192
Query: 255 RIGYHKPALIESSFFPALQGETGKMSASDPN 285
R+GY P + + L G+ KMS+S N
Sbjct: 193 RLGYSSPVCLHTPILVGLDGQ--KMSSSKGN 221
>pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-239629
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb-243545
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
Length = 420
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLV 123
RG+ + D I D K E+ LY G P++++LH+GHL+PF+ R+ + + P+V
Sbjct: 12 RGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHR-PIV 69
Query: 124 I 124
+
Sbjct: 70 L 70
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 118/311 (37%), Gaps = 43/311 (13%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 147
+ TG P+ ALHLGHL + LQD + + L D + + + E R
Sbjct: 25 VLTGDRPTG-ALHLGHLAGSLQNRVRLQDEAE---LFVLLADVQALTDHFDRPEQ---VR 77
Query: 148 EN----AKDIIACGFDVTKT--FIFSDFDYVG--GAFYKNMVKVA---KCVTYNKVVGIF 196
EN A D +A G D KT + S + ++ N+V V+ + T +
Sbjct: 78 ENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQK 137
Query: 197 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 256
G+ G +P QA L+P DQ P TR++ R
Sbjct: 138 GYGERVPAGFFVYPVSQAADIAAFGA-----------TLVPVGDDQLPMLEQTREIVRRF 186
Query: 257 -GYHKPALIES----SFFPALQGETG--KMSASDPNSAIYVTDSXXXXXXXXXXYAFSGG 309
+ P L E S P L G G KMS S N AI + DS G
Sbjct: 187 NALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDSADEVARKVMGMYTDPG 245
Query: 310 QESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 368
++ N PV +L F D A ++ +K +Y AGG+ +VK+ L VL
Sbjct: 246 HLRASDPGRVEGN-----PVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLN 300
Query: 369 ELVERHQVARA 379
++ + RA
Sbjct: 301 GVLAPIRTRRA 311
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 118/311 (37%), Gaps = 43/311 (13%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 147
+ TG P+ ALHLGHL + LQD + + L D + + + E R
Sbjct: 5 VLTGDRPTG-ALHLGHLAGSLQNRVRLQDEAE---LFVLLADVQALTDHFDRPEQ---VR 57
Query: 148 EN----AKDIIACGFDVTKT--FIFSDFDYVG--GAFYKNMVKVA---KCVTYNKVVGIF 196
EN A D +A G D KT + S + ++ N+V V+ + T +
Sbjct: 58 ENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQK 117
Query: 197 GFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 256
G+ G +P QA L+P DQ P TR++ R
Sbjct: 118 GYGERVPAGFFVYPVSQAADIAAFGA-----------TLVPVGDDQLPMLEQTREIVRRF 166
Query: 257 -GYHKPALIES----SFFPALQGETG--KMSASDPNSAIYVTDSXXXXXXXXXXYAFSGG 309
+ P L E S P L G G KMS S N AI + DS G
Sbjct: 167 NALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDSADEVARKVMGMYTDPG 225
Query: 310 QESVELHRKLGANLEVDIPV-KYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 368
++ N PV +L F D A ++ +K +Y AGG+ +VK+ L VL
Sbjct: 226 HLRASDPGRVEGN-----PVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLN 280
Query: 369 ELVERHQVARA 379
++ + RA
Sbjct: 281 GVLAPIRTRRA 291
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 147 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 206
R A +A G D T+ +F + A M++ C+ Y I G
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY-----IGELERMVSAGL 110
Query: 207 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 266
+++PP+ A ++P DQ + +TRD+A R + E+
Sbjct: 111 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFTIPEA 159
Query: 267 SFFPALQGETGKMSASDPNSAIYVT 291
+L T KMS SDPN Y+T
Sbjct: 160 RRIMSLVDPTKKMSKSDPNPKAYIT 184
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 23/149 (15%)
Query: 147 RENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED 202
R+N + + +A G D T+ +F + A M++ C+ Y +G +
Sbjct: 50 RQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQV 103
Query: 203 HIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA 262
G +++PP+ A ++P DQ + +TRD+A R ++K
Sbjct: 104 SAGLLTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAER--FNKRY 150
Query: 263 LIESSFFPALQGETGKMSASDPNSAIYVT 291
+L T KMS SDPN Y+T
Sbjct: 151 FTIPERIMSLVDPTKKMSKSDPNPKAYIT 179
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 17/221 (7%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGH-LVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSV 139
+ G F Y G PS +H+ L+ M TN ++ ++ + I + + N +
Sbjct: 36 DSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDI 94
Query: 140 EESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKV---VG 194
+ + L R + ACG ++ T FI+ S+F ++ + M+ +A+ T ++V
Sbjct: 95 NKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQ 154
Query: 195 IFGFTGEDHI--GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDV 252
I G D + ++ +P +QA G D + IDQ + +
Sbjct: 155 IMGRNESDCLKASQIFYPCMQAADVFELVPE----GID----ICQLGIDQRKVNMLAIEY 206
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293
A G P + +L G KMS SDP AI++ D+
Sbjct: 207 ANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDT 247
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 239 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 288
+DQ F + + P +GY K A + + P L + GKMSASDPNS I
Sbjct: 189 GVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGL-AQGGKMSASDPNSKI 237
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 26/156 (16%)
Query: 240 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDP 284
+DQ + RDVA ++G KP I + +LQG KMS S P
Sbjct: 185 MDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP 244
Query: 285 NSAIYVTDSXXXXXXXXXXYAFSG----GQESVELHRKL-----GANLEVDIPVKYLSFF 335
+A++V DS G +E+ R + G L VD P KY
Sbjct: 245 ETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPV 304
Query: 336 LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 371
+ E ++++Y G + ++K +A+ L E+V
Sbjct: 305 --EYTSYEELERDYTDGRLHPLDLKNAVAESLIEVV 338
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 19/147 (12%)
Query: 147 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 206
R A +A G D T+ +F + A M++ C+ Y +G + G
Sbjct: 59 RRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQVSAGL 112
Query: 207 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 266
+++PP+ A ++P DQ + +TRD+A R A I
Sbjct: 113 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFFTIPEARIPK 161
Query: 267 --SFFPALQGETGKMSASDPNSAIYVT 291
+ +L T KMS SDPN Y+T
Sbjct: 162 VGARIMSLVDPTKKMSKSDPNPKAYIT 188
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 23/151 (15%)
Query: 147 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 206
R A +A G D T+ +F + A M++ C+ Y +G + G
Sbjct: 54 RRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQVSAGL 107
Query: 207 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 266
+++PP+ A ++P DQ + +TRD+A R + E+
Sbjct: 108 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFTIPEA 156
Query: 267 SF------FPALQGETGKMSASDPNSAIYVT 291
+L T KMS SDPN Y+T
Sbjct: 157 RIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 23/151 (15%)
Query: 147 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 206
R A +A G D T+ +F + A M++ C+ Y +G + G
Sbjct: 54 RRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQVSAGL 107
Query: 207 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 266
+++PP+ A ++P DQ + +TRD+A R + E+
Sbjct: 108 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFTIPEA 156
Query: 267 SF------FPALQGETGKMSASDPNSAIYVT 291
+L T KMS SDPN Y+T
Sbjct: 157 RIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 23/151 (15%)
Query: 147 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 206
R A +A G D T+ +F + A M++ C+ Y +G + G
Sbjct: 54 RRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVY---IGELERMTQVSAGL 107
Query: 207 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 266
+++PP+ A ++P DQ + +TRD+A R + E+
Sbjct: 108 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYFTIPEA 156
Query: 267 SF------FPALQGETGKMSASDPNSAIYVT 291
+L T KMS SDPN Y+T
Sbjct: 157 RIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 187
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFK-VPLV 123
LY G P++++LHLGHLVP + R+ Q K V LV
Sbjct: 32 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALV 68
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFK-VPLV 123
LY G P++++LHLGHLVP + R+ Q K V LV
Sbjct: 36 LYCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALV 72
>pdb|2JAN|A Chain A, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|B Chain B, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|C Chain C, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
pdb|2JAN|D Chain D, Tyrosyl-Trna Synthetase From Mycobacterium Tuberculosis In
Unliganded State
Length = 432
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLV 123
RG+ DL+ + ++G +Y G P++ +LH GHLVP + T R Q A P+V
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIV 69
Query: 124 I 124
+
Sbjct: 70 L 70
>pdb|1TYC|A Chain A, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVI 124
E+ LY G P++++LH+GHL P + T R Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAPIL-TMRRFQQAGHRPIAL 68
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 58/154 (37%), Gaps = 30/154 (19%)
Query: 154 IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK------- 206
+A G D T+ +F + A M++ C+ Y + E GK
Sbjct: 66 LAVGIDPTQATLFIQSEVPAHAQAAWMLQ---CIVYIGELERMTQFKEKSAGKEAVSAGL 122
Query: 207 VSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--YHKPALI 264
+++PP+ A ++P DQ + +TRD+A R Y + I
Sbjct: 123 LTYPPLMAADILLYNTD-----------IVPVGEDQKQHIELTRDLAERFNKRYGELFTI 171
Query: 265 ESSFFP-------ALQGETGKMSASDPNSAIYVT 291
+ P +L T KMS SDPN Y+T
Sbjct: 172 PEARIPKVGARIMSLVDPTKKMSKSDPNPKAYIT 205
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 235 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 285
++P DQ + +TRD+A R Y + I + P +L T KMS SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPN 199
Query: 286 SAIYVT 291
Y+T
Sbjct: 200 PKAYIT 205
>pdb|1WQ3|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Comlexed
With 3-Iodo- L-Tyrosine
pdb|2YXN|A Chain A, Structual Basis Of Azido-Tyrosine Recognition By
Engineered Bacterial Tyrosyl-Trna Synthetase
Length = 322
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFK-VPLV 123
L G P++++LHLGHLVP + R+ Q K V LV
Sbjct: 36 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALV 72
>pdb|1VBN|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
pdb|1VBN|B Chain B, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With Tyr-Ams
Length = 318
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFK-VPLV 123
L G P++++LHLGHLVP + R+ Q K V LV
Sbjct: 32 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALV 68
>pdb|1WQ4|A Chain A, Escherichia Coli Tyrosyl-Trna Synthetase Mutant Complexed
With L- Tyrosine
Length = 321
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFK-VPLV 123
L G P++++LHLGHLVP + R+ Q K V LV
Sbjct: 35 LVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALV 71
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 240 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+
Sbjct: 191 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 245
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVI----QLTDD 129
++L ++G + G P+ LHLGH V ++ + KV L+I + D
Sbjct: 26 EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGD 85
Query: 130 EKCMWKN---LSVEESQRLARENAKDIIACGFDVTKT--FIFS---DFDYVGGAFYKNMV 181
K L++EE+ RENAK +A + + +F + +++ G +K +V
Sbjct: 86 PSGRSKTRPPLTLEET----RENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVV 141
Query: 182 KVAKCVTYNKVV 193
++ +T +++
Sbjct: 142 RLTSLMTVAQML 153
>pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution.
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
Length = 814
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 142 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-----AFYKNMVKVAKCVT 188
+Q+L NAK+I A D +TF++ D D + A Y+ + +AK +T
Sbjct: 110 NQKLDETNAKNIEAIKLDSNRTFLWKDLDNLNNSAQLTATYRRLEDLAKQIT 161
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 48/222 (21%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCM-----WKNLS---- 138
+ +G P+ + LH+GHLV + LQ+ + +C W L+
Sbjct: 15 ILSGMRPTGK-LHIGHLVGALENWVKLQE-----------EGNECFYFVADWHALTTHYD 62
Query: 139 -VEESQRLARENAKDIIACGFDVTKTFIFSDF---DYVGGAFYKNMV----KVAKCVTYN 190
V + + R+ + +ACG D K+ IF ++ A +M+ ++ + TY
Sbjct: 63 DVSKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYK 122
Query: 191 KVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTR 250
++ + G + +P +QA +P DQ + +TR
Sbjct: 123 EIKSELNYKDLSTAGFLIYPVLQAADILIYKAEG-----------VPVGEDQVYHIELTR 171
Query: 251 DVAPRIGY------HKPALIESSFFPALQGETG-KMSASDPN 285
++A R Y +P I S P L G G KMS S N
Sbjct: 172 EIARRFNYLYDEVFPEPEAILSR-VPKLPGTDGRKMSKSYGN 212
>pdb|1TYA|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVI 124
E+ LY G P++++LH+GHL + T R Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAAIL-TMRRFQQAGHRPIAL 68
>pdb|1TYD|E Chain E, Structure Of Tyrosyl-Trna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 319
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVI 124
E+ LY G P++++LH+GHL + T R Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLASIL-TMRRFQQAGHRPIAL 68
>pdb|2TS1|A Chain A, Structure Of Tyrosyl-TRNA SYNTHETASE REFINED AT 2.3
ANGSTROMS Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
pdb|3TS1|A Chain A, Structure Of Tyrosyl-t/rna Synthetase Refined At 2.3
Angstroms Resolution. Interaction Of The Enzyme With The
Tyrosyl Adenylate Intermediate
Length = 419
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVI 124
E+ LY G P++++LH+GHL + T R Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATIL-TMRRFQQAGHRPIAL 68
>pdb|4TS1|A Chain A, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
pdb|4TS1|B Chain B, Crystal Structure Of A Deletion Mutant Of A Tyrosyl-TRNA
Synthetase Complexed With Tyrosine
Length = 319
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVI 124
E+ LY G P++++LH+GHL + T R Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLATIL-TMRRFQQAGHRPIAL 68
>pdb|1TYB|E Chain E, Structural Analysis Of A Series Of Mutants Of Tyrosyl-Trna
Synthetase: Enhancement Of Catalysis By Hydrophobic
Interactions
Length = 319
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVI 124
E+ LY G P++++LH+GHL + T R Q A P+ +
Sbjct: 29 ERVTLYCGFDPTADSLHIGHLAGIL-TMRRFQQAGHRPIAL 68
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 34/175 (19%)
Query: 137 LSVEESQRLARENAKDI----IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY-NK 191
++V + + R+N +++ +A G D K +F + A M++ CV Y +
Sbjct: 79 ITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQ---CVAYIGE 135
Query: 192 VVGIFGFT----GEDHI--GKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPY 245
+ + F G + + G +++PP+ A G D L+P DQ +
Sbjct: 136 LERMTQFKDKSKGNEAVVSGLLTYPPLMAADILLY-------GTD----LVPPGEDQKQH 184
Query: 246 FRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPNSAIYVT 291
+TR++A R Y+ I P +L KMS SDPN Y+T
Sbjct: 185 LELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 235 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 285
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 286 SAIYVT 291
Y+T
Sbjct: 200 PKAYIT 205
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 235 LIPCAIDQDPYFRMTRDVAPRIG--YHKPALIESSFFP-------ALQGETGKMSASDPN 285
++P DQ + +TRD+A R Y + I + P +L T K S SDPN
Sbjct: 140 IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIXSLVDPTKKXSKSDPN 199
Query: 286 SAIYVT 291
Y+T
Sbjct: 200 PKAYIT 205
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 261 PALIESSFFPALQGETGKMSASDPNSAIYVTDS 293
P ++ P L KMS SD NSAI++ DS
Sbjct: 230 PVILSHGMLPGLLEGQEKMSKSDENSAIFMDDS 262
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 350 GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 383
G G ++T E+ + AK+L+E +ER V+ A VT+
Sbjct: 129 GKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN 162
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 240 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293
+DQ + R+ IG KP ++ L+ K S SDP+SAI+ D+
Sbjct: 191 LDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFXEDT 245
>pdb|1Y42|X Chain X, Crystal Structure Of A C-Terminally Truncated Cyt-18
Protein
pdb|2RKJ|A Chain A, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|B Chain B, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|E Chain E, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|F Chain F, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|I Chain I, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|J Chain J, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|M Chain M, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
pdb|2RKJ|N Chain N, Cocrystal Structure Of A Tyrosyl-Trna Synthetase Splicing
Factor With A Group I Intron Rna
Length = 392
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 89 YTGRGPSSEALHLGHLVPFM 108
Y G P++ +LH+GHL+P M
Sbjct: 68 YVGIDPTAPSLHVGHLLPLM 87
>pdb|2Y50|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum At 2.80 Angstrom Resolution
pdb|2Y6I|A Chain A, Crystal Structure Of Collagenase G From Clostridium
Histolyticum In Complex With
Isoamylphosphonyl-Gly-Pro-Ala At 3.25 Angstrom
Resolution
Length = 785
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 168 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 199
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|2Y3U|A Chain A, Crystal Structure Of Apo Collagenase G From Clostridium
Histolyticum At 2.55 Angstrom Resolution
Length = 785
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 168 DFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT 199
DF+Y+ G Y + + K + +N++ G+F ++
Sbjct: 25 DFEYLNGLSYTELTNLIKNIKWNQINGLFNYS 56
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 317 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 374
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 375 ------QVARAAVTDEMVDAFMAVR 393
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 317 RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERH-- 374
R+LGA+ + +P Y+ E + + + AG GE+ A+V+TE+V
Sbjct: 25 RELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFD 84
Query: 375 ------QVARAAVTDEMVDAFMAVR 393
+ A VT ++ A +AVR
Sbjct: 85 KVPAAIEGCDAVVTTGLLPAAVAVR 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,030,027
Number of Sequences: 62578
Number of extensions: 439401
Number of successful extensions: 1158
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 65
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)