Query 015773
Match_columns 400
No_of_seqs 242 out of 1766
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145 Cytoplasmic tryptophan 100.0 7E-119 2E-123 841.4 28.7 389 8-397 6-397 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 5E-107 1E-111 813.6 35.8 381 15-396 1-383 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 1.2E-93 2.7E-98 715.7 32.9 361 13-395 2-367 (368)
4 COG0180 TrpS Tryptophanyl-tRNA 100.0 2.3E-69 4.9E-74 524.7 26.2 291 83-393 3-311 (314)
5 TIGR00233 trpS tryptophanyl-tR 100.0 1.4E-64 3.1E-69 500.9 27.3 293 84-393 1-307 (328)
6 PRK08560 tyrosyl-tRNA syntheta 100.0 3E-64 6.5E-69 499.4 26.7 297 59-382 5-324 (329)
7 PRK00927 tryptophanyl-tRNA syn 100.0 3.2E-64 7E-69 499.7 24.5 288 86-393 2-309 (333)
8 PRK12282 tryptophanyl-tRNA syn 100.0 2.4E-63 5.2E-68 492.5 24.8 288 86-393 3-308 (333)
9 cd00806 TrpRS_core catalytic c 100.0 3.5E-62 7.6E-67 474.7 24.8 265 87-370 1-280 (280)
10 PRK12556 tryptophanyl-tRNA syn 100.0 1.4E-61 3E-66 479.4 26.0 284 86-393 4-310 (332)
11 PLN02886 aminoacyl-tRNA ligase 100.0 1.8E-59 3.9E-64 468.8 25.2 284 86-392 47-362 (389)
12 PRK12283 tryptophanyl-tRNA syn 100.0 4.1E-59 8.9E-64 465.8 25.7 284 87-392 4-374 (398)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 1.6E-58 3.5E-63 464.4 28.3 297 59-381 41-366 (383)
14 PRK12284 tryptophanyl-tRNA syn 100.0 1.2E-58 2.7E-63 465.8 26.3 284 85-392 2-309 (431)
15 PRK13354 tyrosyl-tRNA syntheta 100.0 1.3E-57 2.7E-62 462.7 28.7 290 60-383 8-318 (410)
16 PRK05912 tyrosyl-tRNA syntheta 100.0 7.2E-57 1.6E-61 457.5 27.9 289 59-382 8-319 (408)
17 cd00805 TyrRS_core catalytic c 100.0 2.3E-56 5.1E-61 431.8 21.5 249 87-370 2-269 (269)
18 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.2E-54 2.7E-59 459.8 28.9 308 59-382 7-341 (682)
19 PF00579 tRNA-synt_1b: tRNA sy 100.0 4.6E-56 1E-60 434.7 14.4 273 82-372 2-292 (292)
20 cd00395 Tyr_Trp_RS_core cataly 100.0 8.4E-55 1.8E-59 421.4 21.8 251 87-370 1-273 (273)
21 KOG2713 Mitochondrial tryptoph 100.0 3.8E-51 8.1E-56 383.7 19.7 288 85-393 13-323 (347)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 4.5E-48 9.7E-53 389.5 23.9 281 59-380 6-301 (377)
23 COG0162 TyrS Tyrosyl-tRNA synt 100.0 3.8E-47 8.3E-52 381.5 24.0 299 59-393 7-320 (401)
24 KOG2144 Tyrosyl-tRNA synthetas 100.0 7.8E-42 1.7E-46 321.5 20.0 300 59-383 10-336 (360)
25 KOG2623 Tyrosyl-tRNA synthetas 100.0 3E-41 6.6E-46 328.6 14.8 288 59-377 34-355 (467)
26 PTZ00348 tyrosyl-tRNA syntheta 100.0 5.7E-35 1.2E-39 310.1 21.5 243 112-379 400-661 (682)
27 cd00802 class_I_aaRS_core cata 99.4 1.5E-12 3.2E-17 114.3 10.2 65 209-283 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.3 1.4E-11 3E-16 117.2 12.0 169 93-301 9-189 (239)
29 PRK00750 lysK lysyl-tRNA synth 99.1 7.3E-09 1.6E-13 109.0 18.3 208 74-292 13-293 (510)
30 cd00418 GlxRS_core catalytic c 98.9 2.3E-08 5E-13 94.7 12.9 154 93-287 9-162 (230)
31 cd00674 LysRS_core_class_I cat 98.8 8.2E-08 1.8E-12 96.5 14.9 208 74-292 9-288 (353)
32 TIGR00467 lysS_arch lysyl-tRNA 98.4 4E-06 8.6E-11 88.3 12.8 199 84-292 18-287 (515)
33 PF01921 tRNA-synt_1f: tRNA sy 97.9 5.8E-05 1.3E-09 75.7 10.3 204 83-299 22-307 (360)
34 TIGR00464 gltX_bact glutamyl-t 97.8 0.0011 2.5E-08 69.4 18.7 64 235-302 200-269 (470)
35 cd09287 GluRS_non_core catalyt 97.8 0.00023 4.9E-09 68.0 11.3 163 90-284 6-172 (240)
36 PRK14895 gltX glutamyl-tRNA sy 97.7 0.0049 1.1E-07 64.9 20.5 119 235-368 199-331 (513)
37 PRK05710 glutamyl-Q tRNA(Asp) 97.6 0.00094 2E-08 65.9 13.0 70 93-172 13-82 (299)
38 COG1384 LysS Lysyl-tRNA synthe 97.6 0.0013 2.8E-08 68.4 13.7 107 84-194 19-156 (521)
39 PRK01406 gltX glutamyl-tRNA sy 97.5 0.0049 1.1E-07 64.7 17.7 65 234-302 209-279 (476)
40 cd00807 GlnRS_core catalytic c 97.4 0.00096 2.1E-08 63.6 10.0 161 93-285 9-171 (238)
41 PLN02627 glutamyl-tRNA synthet 97.4 0.013 2.9E-07 61.9 19.1 65 234-302 251-321 (535)
42 PRK04156 gltX glutamyl-tRNA sy 97.4 0.0029 6.2E-08 67.5 14.2 180 84-284 100-344 (567)
43 TIGR03838 queuosine_YadB gluta 97.4 0.0032 7E-08 61.3 13.5 70 93-172 8-77 (272)
44 PRK01611 argS arginyl-tRNA syn 97.4 0.00061 1.3E-08 72.0 9.1 62 234-296 275-339 (507)
45 cd00672 CysRS_core catalytic c 97.3 0.0018 4E-08 60.9 10.6 76 83-160 19-105 (213)
46 PRK12410 glutamylglutaminyl-tR 97.2 0.056 1.2E-06 56.1 20.1 69 93-172 7-75 (433)
47 PLN03233 putative glutamate-tR 97.1 0.0056 1.2E-07 64.6 12.4 75 88-173 12-88 (523)
48 COG0008 GlnS Glutamyl- and glu 97.1 0.0083 1.8E-07 62.8 13.1 50 234-285 208-257 (472)
49 PRK00260 cysS cysteinyl-tRNA s 97.0 0.0063 1.4E-07 63.7 11.8 75 85-161 23-110 (463)
50 PTZ00402 glutamyl-tRNA synthet 97.0 0.012 2.7E-07 62.9 13.9 75 88-172 53-129 (601)
51 PLN02907 glutamate-tRNA ligase 96.8 0.022 4.7E-07 62.8 14.5 74 88-172 214-289 (722)
52 PRK12558 glutamyl-tRNA synthet 96.8 0.014 2.9E-07 60.8 12.0 68 234-303 198-269 (445)
53 COG0215 CysS Cysteinyl-tRNA sy 96.7 0.011 2.3E-07 61.4 10.7 73 86-159 23-106 (464)
54 PLN02859 glutamine-tRNA ligase 96.5 0.084 1.8E-06 58.2 16.3 89 71-172 249-340 (788)
55 cd00671 ArgRS_core catalytic c 96.5 0.015 3.3E-07 54.4 9.0 46 237-284 164-212 (212)
56 TIGR00234 tyrS tyrosyl-tRNA sy 96.3 0.0032 6.9E-08 64.2 3.3 63 247-311 196-263 (377)
57 TIGR00435 cysS cysteinyl-tRNA 96.1 0.047 1E-06 57.3 11.2 78 82-161 19-107 (465)
58 PRK05347 glutaminyl-tRNA synth 94.4 0.28 6E-06 52.3 10.5 87 76-172 18-106 (554)
59 cd00668 Ile_Leu_Val_MetRS_core 94.4 0.036 7.8E-07 54.8 3.6 55 235-292 229-286 (312)
60 TIGR00440 glnS glutaminyl-tRNA 93.7 0.24 5.3E-06 52.5 8.3 70 93-172 8-77 (522)
61 PTZ00437 glutaminyl-tRNA synth 93.5 0.22 4.7E-06 53.2 7.5 78 85-173 51-128 (574)
62 TIGR00463 gltX_arch glutamyl-t 93.2 0.21 4.4E-06 53.5 6.9 74 88-172 94-169 (560)
63 PRK14703 glutaminyl-tRNA synth 92.9 0.67 1.5E-05 51.5 10.5 87 76-172 20-108 (771)
64 PF00749 tRNA-synt_1c: tRNA sy 92.8 0.44 9.5E-06 47.5 8.2 52 234-287 201-252 (314)
65 cd00818 IleRS_core catalytic c 91.8 0.17 3.7E-06 50.8 4.0 54 235-292 255-312 (338)
66 COG0162 TyrS Tyrosyl-tRNA synt 91.8 0.2 4.4E-06 51.4 4.4 102 276-380 231-356 (401)
67 cd02156 nt_trans nucleotidyl t 89.8 1.1 2.5E-05 36.7 6.5 64 88-159 2-65 (105)
68 TIGR00456 argS arginyl-tRNA sy 89.5 0.32 6.9E-06 52.3 3.7 57 236-296 332-389 (566)
69 KOG0432 Valyl-tRNA synthetase 89.5 0.58 1.3E-05 51.9 5.6 50 235-288 549-602 (995)
70 cd00817 ValRS_core catalytic c 89.3 0.29 6.3E-06 50.0 3.0 55 235-292 299-356 (382)
71 cd00812 LeuRS_core catalytic c 88.8 0.25 5.3E-06 49.1 2.1 54 235-292 227-288 (314)
72 PRK00133 metG methionyl-tRNA s 88.7 1.3 2.9E-05 48.6 7.8 76 84-161 2-89 (673)
73 KOG1147 Glutamyl-tRNA syntheta 88.6 1.2 2.5E-05 47.1 6.8 65 91-164 206-270 (712)
74 PRK13804 ileS isoleucyl-tRNA s 87.4 0.57 1.2E-05 53.6 4.1 52 235-291 586-642 (961)
75 PRK05743 ileS isoleucyl-tRNA s 87.2 0.56 1.2E-05 53.3 3.9 52 235-290 548-603 (912)
76 PLN02224 methionine-tRNA ligas 86.5 1.6 3.4E-05 47.6 6.6 94 64-161 52-156 (616)
77 PF00133 tRNA-synt_1: tRNA syn 86.5 0.6 1.3E-05 50.6 3.5 54 235-291 517-573 (601)
78 PRK11893 methionyl-tRNA synthe 86.4 0.42 9E-06 50.4 2.2 52 235-292 257-312 (511)
79 TIGR00392 ileS isoleucyl-tRNA 86.3 0.62 1.3E-05 52.6 3.6 55 235-292 567-624 (861)
80 PRK00390 leuS leucyl-tRNA synt 84.5 2.3 5.1E-05 47.7 7.0 77 83-161 31-119 (805)
81 COG0060 IleS Isoleucyl-tRNA sy 83.9 1.7 3.6E-05 49.3 5.5 59 235-300 558-619 (933)
82 COG0143 MetG Methionyl-tRNA sy 83.8 2.7 5.8E-05 45.2 6.8 75 84-159 5-90 (558)
83 PRK12451 arginyl-tRNA syntheta 83.7 0.92 2E-05 48.8 3.3 57 235-295 328-387 (562)
84 cd00814 MetRS_core catalytic c 83.1 0.86 1.9E-05 45.3 2.6 54 235-292 238-293 (319)
85 COG0018 ArgS Arginyl-tRNA synt 82.4 5.4 0.00012 43.1 8.5 67 234-301 337-405 (577)
86 PRK13208 valS valyl-tRNA synth 82.4 1.2 2.6E-05 49.9 3.7 54 235-292 489-546 (800)
87 PRK06039 ileS isoleucyl-tRNA s 81.4 1.5 3.2E-05 50.4 4.0 55 235-292 548-605 (975)
88 PLN02843 isoleucyl-tRNA synthe 81.1 1.6 3.4E-05 50.1 4.0 52 235-290 567-622 (974)
89 PF09334 tRNA-synt_1g: tRNA sy 80.7 3.6 7.7E-05 42.3 6.2 53 234-292 284-340 (391)
90 TIGR00422 valS valyl-tRNA synt 80.4 1.5 3.3E-05 49.6 3.6 54 235-292 481-538 (861)
91 TIGR00398 metG methionyl-tRNA 79.7 1.6 3.5E-05 46.4 3.4 54 235-292 285-340 (530)
92 PRK12268 methionyl-tRNA synthe 79.3 1.4 3E-05 47.2 2.7 54 235-292 290-347 (556)
93 PRK00133 metG methionyl-tRNA s 79.0 12 0.00025 41.3 9.8 52 235-292 287-342 (673)
94 PRK12267 methionyl-tRNA synthe 78.4 1.2 2.6E-05 48.7 2.0 54 235-292 257-312 (648)
95 PRK05729 valS valyl-tRNA synth 78.4 1.7 3.7E-05 49.3 3.2 54 235-292 476-533 (874)
96 PLN02943 aminoacyl-tRNA ligase 77.7 1.8 3.8E-05 49.6 3.1 54 235-292 539-596 (958)
97 PRK14900 valS valyl-tRNA synth 77.5 1.9 4E-05 50.0 3.2 54 235-292 494-551 (1052)
98 PRK12268 methionyl-tRNA synthe 77.5 5.4 0.00012 42.7 6.6 73 87-161 5-91 (556)
99 PLN02959 aminoacyl-tRNA ligase 77.5 2.2 4.9E-05 49.4 3.9 53 235-292 674-731 (1084)
100 TIGR00398 metG methionyl-tRNA 76.5 5.3 0.00012 42.5 6.2 66 94-161 10-86 (530)
101 PLN02381 valyl-tRNA synthetase 76.5 2.3 5E-05 49.3 3.6 53 235-291 611-667 (1066)
102 PF09334 tRNA-synt_1g: tRNA sy 76.4 1.1 2.3E-05 46.1 0.8 36 94-131 10-49 (391)
103 PLN02563 aminoacyl-tRNA ligase 75.6 1.7 3.6E-05 49.8 2.2 13 278-291 723-735 (963)
104 TIGR00396 leuS_bact leucyl-tRN 75.0 17 0.00037 41.1 10.0 77 83-160 28-115 (842)
105 PRK12300 leuS leucyl-tRNA synt 75.0 2 4.3E-05 48.9 2.6 53 235-292 533-590 (897)
106 PRK12418 cysteinyl-tRNA synthe 74.9 2.5 5.5E-05 43.3 3.1 72 85-158 9-92 (384)
107 PRK11893 methionyl-tRNA synthe 74.9 8.3 0.00018 40.6 7.1 66 94-161 12-88 (511)
108 PLN02882 aminoacyl-tRNA ligase 74.8 2.5 5.4E-05 49.4 3.3 51 235-289 570-624 (1159)
109 PF06543 Lac_bphage_repr: Lact 74.7 2.7 5.8E-05 29.9 2.2 31 26-57 16-46 (49)
110 PF01406 tRNA-synt_1e: tRNA sy 74.5 11 0.00023 37.4 7.2 75 84-160 7-93 (300)
111 PLN02286 arginine-tRNA ligase 74.4 5.2 0.00011 43.3 5.5 60 234-296 330-395 (576)
112 TIGR00395 leuS_arch leucyl-tRN 74.1 2.5 5.5E-05 48.3 3.1 53 235-292 576-633 (938)
113 PTZ00419 valyl-tRNA synthetase 73.3 3.1 6.7E-05 47.9 3.6 51 235-289 541-595 (995)
114 PF01406 tRNA-synt_1e: tRNA sy 71.5 1.6 3.5E-05 43.2 0.7 51 237-292 211-265 (300)
115 PLN02224 methionine-tRNA ligas 70.9 3.4 7.4E-05 45.0 3.1 54 235-292 324-379 (616)
116 TIGR03447 mycothiol_MshC cyste 70.4 3.6 7.9E-05 42.6 3.0 70 88-159 40-120 (411)
117 PRK12267 methionyl-tRNA synthe 70.4 8.3 0.00018 42.2 6.0 76 85-161 5-91 (648)
118 COG0495 LeuS Leucyl-tRNA synth 70.2 6.5 0.00014 44.1 5.1 96 59-163 16-123 (814)
119 PTZ00427 isoleucine-tRNA ligas 69.0 4.7 0.0001 47.3 3.9 50 235-289 676-730 (1205)
120 KOG0437 Leucyl-tRNA synthetase 68.1 9.3 0.0002 42.2 5.5 33 348-381 777-809 (1080)
121 TIGR00396 leuS_bact leucyl-tRN 67.8 2.5 5.3E-05 47.8 1.2 14 278-292 604-617 (842)
122 PRK14536 cysS cysteinyl-tRNA s 66.9 19 0.00042 38.1 7.6 76 84-161 22-119 (490)
123 PRK12418 cysteinyl-tRNA synthe 66.8 22 0.00047 36.6 7.7 25 265-292 250-274 (384)
124 cd00814 MetRS_core catalytic c 66.1 20 0.00044 35.5 7.3 66 94-161 11-87 (319)
125 COG0495 LeuS Leucyl-tRNA synth 65.4 56 0.0012 36.9 11.0 53 237-292 531-592 (814)
126 cd00668 Ile_Leu_Val_MetRS_core 64.7 16 0.00036 35.9 6.3 36 94-131 11-50 (312)
127 PF00750 tRNA-synt_1d: tRNA sy 64.6 3.5 7.6E-05 41.7 1.5 62 234-297 241-306 (354)
128 PTZ00399 cysteinyl-tRNA-synthe 64.6 21 0.00046 39.2 7.6 76 84-160 59-147 (651)
129 COG0525 ValS Valyl-tRNA synthe 64.3 8.2 0.00018 43.5 4.4 51 235-289 481-535 (877)
130 PLN02610 probable methionyl-tR 62.9 5.3 0.00011 44.9 2.6 54 235-292 304-361 (801)
131 COG0143 MetG Methionyl-tRNA sy 62.7 6.6 0.00014 42.3 3.2 53 237-292 293-346 (558)
132 cd00818 IleRS_core catalytic c 61.9 20 0.00044 35.9 6.4 45 85-130 2-50 (338)
133 PRK00390 leuS leucyl-tRNA synt 60.5 5 0.00011 45.2 1.9 49 235-292 526-583 (805)
134 PLN02946 cysteine-tRNA ligase 60.4 26 0.00057 37.8 7.2 74 84-159 79-164 (557)
135 cd00817 ValRS_core catalytic c 60.0 27 0.00058 35.7 7.0 44 86-130 3-50 (382)
136 PLN02610 probable methionyl-tR 59.8 24 0.00052 39.8 7.1 77 84-161 17-105 (801)
137 TIGR03447 mycothiol_MshC cyste 59.5 27 0.00057 36.3 6.8 25 264-291 276-300 (411)
138 cd00812 LeuRS_core catalytic c 59.0 18 0.0004 35.7 5.5 66 94-161 11-87 (314)
139 PTZ00399 cysteinyl-tRNA-synthe 58.8 5.7 0.00012 43.6 2.0 51 236-292 272-328 (651)
140 KOG1148 Glutaminyl-tRNA synthe 58.6 33 0.00072 37.1 7.3 98 88-198 249-356 (764)
141 PRK14534 cysS cysteinyl-tRNA s 57.0 33 0.00071 36.4 7.1 75 85-161 21-117 (481)
142 PLN02946 cysteine-tRNA ligase 55.3 4.6 9.9E-05 43.4 0.5 26 263-292 311-336 (557)
143 KOG2007 Cysteinyl-tRNA synthet 55.1 27 0.00059 37.0 6.0 51 82-133 52-109 (586)
144 PRK14535 cysS cysteinyl-tRNA s 54.6 42 0.00091 37.1 7.6 76 84-161 247-334 (699)
145 KOG0435 Leucyl-tRNA synthetase 54.0 30 0.00065 38.0 6.2 59 59-127 40-102 (876)
146 PRK14535 cysS cysteinyl-tRNA s 53.4 5.4 0.00012 43.8 0.7 35 263-301 496-535 (699)
147 PRK14536 cysS cysteinyl-tRNA s 52.3 9.4 0.0002 40.5 2.2 24 266-292 269-292 (490)
148 PLN02563 aminoacyl-tRNA ligase 51.0 42 0.00091 38.7 7.3 78 83-160 109-197 (963)
149 COG0414 PanC Panthothenate syn 48.9 1.9E+02 0.0041 28.5 10.3 50 236-293 147-196 (285)
150 PLN02943 aminoacyl-tRNA ligase 48.8 67 0.0014 37.1 8.5 62 60-130 72-136 (958)
151 PF00133 tRNA-synt_1: tRNA syn 48.2 60 0.0013 35.3 7.7 45 81-126 20-67 (601)
152 PRK13208 valS valyl-tRNA synth 47.8 28 0.00061 39.2 5.2 61 60-129 22-85 (800)
153 KOG0433 Isoleucyl-tRNA synthet 46.7 19 0.00042 39.7 3.5 58 234-300 568-630 (937)
154 cd02168 NMNAT_Nudix Nicotinami 46.6 83 0.0018 28.7 7.3 69 88-167 3-73 (181)
155 PRK14534 cysS cysteinyl-tRNA s 45.8 13 0.00028 39.3 2.1 25 264-292 268-292 (481)
156 TIGR00422 valS valyl-tRNA synt 42.3 54 0.0012 37.2 6.4 63 59-130 16-81 (861)
157 PF00749 tRNA-synt_1c: tRNA sy 40.1 22 0.00047 35.5 2.5 70 93-172 9-78 (314)
158 KOG1149 Glutamyl-tRNA syntheta 36.8 57 0.0012 34.1 4.9 30 254-285 259-288 (524)
159 COG0525 ValS Valyl-tRNA synthe 35.6 30 0.00065 39.2 3.0 36 95-131 45-82 (877)
160 PRK05729 valS valyl-tRNA synth 33.3 1E+02 0.0023 35.1 6.9 61 60-130 21-84 (874)
161 PLN02660 pantoate--beta-alanin 31.1 5.3E+02 0.011 25.5 10.9 59 237-303 152-210 (284)
162 PRK05379 bifunctional nicotina 31.0 2.2E+02 0.0048 28.6 8.1 70 85-167 7-78 (340)
163 cd02166 NMNAT_Archaea Nicotina 30.1 3.5E+02 0.0076 24.0 8.5 67 97-171 9-77 (163)
164 TIGR00456 argS arginyl-tRNA sy 28.8 64 0.0014 34.8 4.0 41 88-130 117-162 (566)
165 PRK07217 replication factor A; 28.8 1.6E+02 0.0035 29.4 6.5 50 340-390 6-58 (311)
166 PLN02843 isoleucyl-tRNA synthe 28.6 1.5E+02 0.0032 34.4 7.1 43 82-125 30-75 (974)
167 COG5309 Exo-beta-1,3-glucanase 28.1 4.8E+02 0.01 25.8 9.3 115 38-161 57-173 (305)
168 PLN02381 valyl-tRNA synthetase 27.4 72 0.0016 37.3 4.4 63 59-130 111-176 (1066)
169 PRK14900 valS valyl-tRNA synth 26.7 63 0.0014 37.7 3.8 64 59-130 30-96 (1052)
170 TIGR03569 NeuB_NnaB N-acetylne 26.6 4.6E+02 0.01 26.3 9.5 96 13-124 90-199 (329)
171 PRK13793 nicotinamide-nucleoti 26.4 4E+02 0.0088 24.8 8.4 73 86-171 6-80 (196)
172 PTZ00419 valyl-tRNA synthetase 24.2 82 0.0018 36.5 4.1 66 60-130 40-108 (995)
173 COG2521 Predicted archaeal met 23.9 32 0.00069 33.2 0.6 90 14-117 172-268 (287)
174 KOG0434 Isoleucyl-tRNA synthet 23.4 64 0.0014 35.7 2.7 85 199-300 531-618 (1070)
175 PRK00777 phosphopantetheine ad 22.4 3.5E+02 0.0075 23.9 6.9 46 235-282 91-136 (153)
176 PRK10594 murein L,D-transpepti 21.6 68 0.0015 35.0 2.6 27 287-314 498-525 (608)
177 TIGR03586 PseI pseudaminic aci 20.4 2E+02 0.0044 28.9 5.5 96 14-128 92-200 (327)
178 cd02173 ECT CTP:phosphoethanol 20.2 1.5E+02 0.0034 26.1 4.2 38 85-130 3-40 (152)
No 1
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-119 Score=841.37 Aligned_cols=389 Identities=65% Similarity=1.143 Sum_probs=382.0
Q ss_pred hhhhccccccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCc
Q 015773 8 QREEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85 (400)
Q Consensus 8 ~~~~~~~~~~~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~ 85 (400)
..+|.+|+.||||+|++ ..+|||||||.+|||++|++++++|++++||+++|+|+|||+||+|||++.||+++++|+|
T Consensus 6 ~~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kp 85 (397)
T KOG2145|consen 6 GATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKP 85 (397)
T ss_pred cccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCc
Confidence 34677899999999987 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
||+|||++||+++|||||++|++++ +|||++|++|++|+++|+++++++.++.|+..+++++|+++|+||||||++|+|
T Consensus 86 FyLYTGRGpSS~smHlGHliPFift-KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfI 164 (397)
T KOG2145|consen 86 FYLYTGRGPSSESMHLGHLIPFIFT-KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFI 164 (397)
T ss_pred eEEEeCCCCCccccccccchhHHHH-HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEE
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred Eecccccc-cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchh
Q 015773 166 FSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 244 (400)
Q Consensus 166 ~~~s~~~~-~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~ 244 (400)
|+|.++++ +.+|.+++++++++|+|+.+++|||+++.++|++.+|..|||+||++|||.|+....|++|+|||++||||
T Consensus 165 Fsn~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDP 244 (397)
T KOG2145|consen 165 FSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDP 244 (397)
T ss_pred EechhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCCh
Confidence 99999997 49999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcc
Q 015773 245 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLE 324 (400)
Q Consensus 245 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~ 324 (400)
|+|||||+|+|+|++||+.+|+.++|.|+|++.|||.|+|||+|||+|++++|++||++|||+||+.|+|+||++||||+
T Consensus 245 yFRmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~d 324 (397)
T KOG2145|consen 245 YFRMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPD 324 (397)
T ss_pred HHHhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCC
Q 015773 325 VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 397 (400)
Q Consensus 325 v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (400)
|||+|+||+||.+|+.++|+++.+|.+|+|.+||+|+.|++.|++++..+|++|++++++.|++||..|+|+|
T Consensus 325 VDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtde~ld~Fm~~r~l~~ 397 (397)
T KOG2145|consen 325 VDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTDETLDAFMDPRKLSF 397 (397)
T ss_pred ceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.4e-107 Score=813.63 Aligned_cols=381 Identities=87% Similarity=1.390 Sum_probs=366.6
Q ss_pred cccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeec
Q 015773 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (400)
Q Consensus 15 ~~~~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~ 92 (400)
+.||||+|++ .+.|||+|||++|||+|||+++++|++++||+++|+|+|||+||+|||++.+++++++|+|+++|||+
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 4699999994 24799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
+|||++|||||++|++++ +|||+++|++++|+|||+++++.+.+++|++++++++|+++|+||||||+|++||+|++|.
T Consensus 81 ~PSg~~lHlGHlv~~~~~-~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~ 159 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFT-KYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYV 159 (383)
T ss_pred CCCCccccHHHHHHHHHH-HHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHH
Confidence 999988999999999999 9999999999999999999999888999999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHH
Q 015773 173 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 252 (400)
Q Consensus 173 ~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdl 252 (400)
+..+|.++++++|++|++++++++||.++.++|+++||+|||||+|+.+||.++....+++|+||||+||+||++||||+
T Consensus 160 ~~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdi 239 (383)
T PLN02486 160 GGAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDV 239 (383)
T ss_pred hHhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHH
Confidence 66799999999999999999999999889999999999999999999999988776667899999999999999999999
Q ss_pred HhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHH
Q 015773 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 332 (400)
Q Consensus 253 a~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l 332 (400)
|+|+|+.+|+.++++++|+|+|+++|||||.|||+|||+|+|++|++||++|||||++.|+++|++.||||++|++|+||
T Consensus 240 a~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l 319 (383)
T PLN02486 240 APRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYL 319 (383)
T ss_pred HHHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHH
Confidence 99999999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCC
Q 015773 333 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLP 396 (400)
Q Consensus 333 ~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (400)
++|+++++++++|+++|++|+++|++||+.||+.|+++|+++|+||++++++.|++||..|+++
T Consensus 320 ~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~~~~~~~~~~~~~~~ 383 (383)
T PLN02486 320 NFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVTDEMVDAFMAVRPLP 383 (383)
T ss_pred HHHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 9998778999999999999999999999999999999999999999999999999999999874
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-93 Score=715.73 Aligned_cols=361 Identities=39% Similarity=0.679 Sum_probs=338.9
Q ss_pred cccccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeec
Q 015773 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (400)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~ 92 (400)
.++.||||+|++ .+||+||+++||++|||+++++ +++ +|+|+|||+||+|||++.+++++++|+|+++|||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG~ 73 (368)
T PRK12285 2 DEFMVTPWEVSG--IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTGF 73 (368)
T ss_pred CCceeCCCcCcC--cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEEcc
Confidence 578999999998 8999999999999999999998 988 59999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
+||| +|||||+++++++ +|||+ +|++++|+|||+||++++..+++++++++++++++|+||||||++++||.||+|.
T Consensus 74 ~PSG-~lHLGh~~~~~~~-~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 74 MPSG-PMHIGHKMVFDEL-KWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI 150 (368)
T ss_pred CCCC-CccHHHHHHHHHH-HHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH
Confidence 9998 7999999998877 99999 5899999999999999888999999999999999999999999999999999997
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHH
Q 015773 173 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 252 (400)
Q Consensus 173 ~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdl 252 (400)
.+|..++.+++++|++++++++||++++|+|+++||+|||||+|++ +++. ...+|+||||.||+||++||||+
T Consensus 151 --~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil~~---~~~~--~~~~~lvPvG~DQ~~h~~ltRdi 223 (368)
T PRK12285 151 --KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADILHP---QLEE--GPKPTLVPVGIDQDPHIRLTRDI 223 (368)
T ss_pred --HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHHhh---cccc--cCCceEEEeccchHHHHHHHHHH
Confidence 3778888899999999999999999999999999999999987644 3222 12469999999999999999999
Q ss_pred Hhhh----CCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchH
Q 015773 253 APRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP 328 (400)
Q Consensus 253 a~r~----~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~ 328 (400)
|+|+ |+++|++++++++|||+| +|||||+|+|+|||+|+|++|++||++ ||||++.|+++|++.||||++|++
T Consensus 224 A~r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~~~v 300 (368)
T PRK12285 224 AERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDECVV 300 (368)
T ss_pred HHHHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCcchH
Confidence 9999 889999999999999998 799999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015773 329 VKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 395 (400)
Q Consensus 329 ~~~l~~f~-~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (400)
++|+++|+ .+++++++|+++|++|+++||+||+.||+.|+++|+++|+||+++++ .|++|+...++
T Consensus 301 ~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~~-~~~~~~~~~~~ 367 (368)
T PRK12285 301 YELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEARE-ILEKYLYDGKL 367 (368)
T ss_pred HHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccccC
Confidence 99999997 57889999999999999999999999999999999999999999999 99999877654
No 4
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-69 Score=524.70 Aligned_cols=291 Identities=29% Similarity=0.429 Sum_probs=260.0
Q ss_pred CCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 015773 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 83 g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~-e~i~~~~~~~~~~ilA~G~dp~ 161 (400)
+.+++++||++||| .||||||+++++.|..+|+. +..+++.|||+||++.+..++ +.+++++++++++||||||||+
T Consensus 3 ~~~~~vlSG~~PSG-~lHLGny~ga~~~~v~~q~~-~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~ 80 (314)
T COG0180 3 MKKFRVLSGIQPSG-KLHLGNYLGAIRNWVLLQEE-YYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPE 80 (314)
T ss_pred CCCceEEecCCCCC-CcchhHhHHHHHHHHHHhcc-cCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcc
Confidence 46789999999999 69999999999995556654 356677779999999876444 8899999999999999999999
Q ss_pred ceEEEecccccccchHHHHHHHHhhcCHHHHHHhhCCCCCc-------cccccchhhhhcCCCCCCCcccccccCCCCce
Q 015773 162 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED-------HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 234 (400)
Q Consensus 162 kt~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~-------~~g~~~YPllQaad~~~~~~~dil~~~~~~~~ 234 (400)
|++||.||++++ .+...+.++..++++++.+.++|++.. ++|.|+||+|||| |||.+++ |
T Consensus 81 k~~if~QS~v~e--~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAA--------DILl~~a---~ 147 (314)
T COG0180 81 KSTIFLQSEVPE--HAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAA--------DILLYQA---T 147 (314)
T ss_pred ccEEEEccCchH--HHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHH--------HhhhccC---C
Confidence 999999999975 455567789999999999999887544 4999999999999 6888887 7
Q ss_pred eeccccCchhHHHHHHHHHhhhC------CCCCeeeecc--cccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccc
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIG------YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 306 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~~~--~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~ 306 (400)
+||||.||+||+|||||||+||| +++|..+++. ++|||+|+ +|||||+|||+|+|+|+|++|++||++ |.
T Consensus 148 ~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~ 225 (314)
T COG0180 148 LVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AA 225 (314)
T ss_pred eeccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hc
Confidence 99999999999999999999999 7899999988 99999998 999999999999999999999999999 77
Q ss_pred cCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--
Q 015773 307 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-- 384 (400)
Q Consensus 307 t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~-- 384 (400)
|++ .+.+++++ ||+|++|++|+|+.+|+. +++.+++++.|++|+++||+||+.||+.|+++|+++|+||++++++
T Consensus 226 td~-~~~~~~~~-~g~Pe~~~l~~~~~~~~~-~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~ 302 (314)
T COG0180 226 TDG-PTLIEYRK-GGKPEVCNLFEIYSAFFE-DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPA 302 (314)
T ss_pred cCC-CCccccCC-CCCCCcchHHHHHHHhcC-CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 877 77788888 999999999999999975 5566799999999999999999999999999999999999999875
Q ss_pred HHHHHHhcC
Q 015773 385 MVDAFMAVR 393 (400)
Q Consensus 385 ~~~~~~~~~ 393 (400)
++.+++..+
T Consensus 303 ~l~~il~~g 311 (314)
T COG0180 303 YLDDILRKG 311 (314)
T ss_pred HHHHHHhcc
Confidence 677776543
No 5
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.4e-64 Score=500.87 Aligned_cols=293 Identities=38% Similarity=0.570 Sum_probs=263.1
Q ss_pred CceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCc
Q 015773 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTK 162 (400)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~-~~e~i~~~~~~~~~~ilA~G~dp~k 162 (400)
+|+++|+|++||| .|||||++++++. .++|+ .|+.++|+|||+||++.++. +.+.++.++++++++|+|||+||+|
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~-~~~~q-~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k 77 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQT-KWLQQ-FGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKK 77 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHH-HHHHh-CCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhh
Confidence 4789999999999 8999999999999 56665 48999999999999997654 7788999999999999999999999
Q ss_pred eEEEecccccccchHHHHHHHHhhcCHHHHHHhhCCCCC-----ccccccchhhhhcCCCCCCCcccccccCCCCceeec
Q 015773 163 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-----DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 237 (400)
Q Consensus 163 t~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~~~~-----~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp 237 (400)
++||.||+|. .++..++.+++++|++++.+..+|.+. +++|+|+||+|||| |||.++++ +||
T Consensus 78 ~~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaa--------Dil~~~~d---~vp 144 (328)
T TIGR00233 78 TFIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAA--------DILLYQAD---LVP 144 (328)
T ss_pred eEEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHh--------hhhhcCCC---eee
Confidence 9999999997 477778889999999999998877544 49999999999999 67788875 899
Q ss_pred cccCchhHHHHHHHHHhhhC------CCCCeeeecccccCCCCC-CCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCc
Q 015773 238 CAIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGE-TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 310 (400)
Q Consensus 238 ~G~DQd~~~~l~rdla~r~~------~~kp~~l~~~~lp~L~G~-~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~ 310 (400)
||.||+||++||||+|+|+| +++|..++++++|+|.|. |+|||||+|||+|||+|+|++|++||++ |+|++.
T Consensus 145 vG~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI~~-a~td~~ 223 (328)
T TIGR00233 145 VGIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRK-AATDGG 223 (328)
T ss_pred cccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHHHh-cCCCCC
Confidence 99999999999999999999 789999887775555554 2699999999999999999999999999 888865
Q ss_pred -chhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHH
Q 015773 311 -ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 389 (400)
Q Consensus 311 -~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~ 389 (400)
.+.+++++.+|+|+++++|+++.+|+.++++++++.++|.+|+++|++||+.||+.|+++|+|+|++|+++++++|+++
T Consensus 224 ~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~~~~~~ 303 (328)
T TIGR00233 224 RVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEEILDKI 303 (328)
T ss_pred CCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788889999999999999999877789999999999999999999999999999999999999999999899999
Q ss_pred HhcC
Q 015773 390 MAVR 393 (400)
Q Consensus 390 ~~~~ 393 (400)
+..+
T Consensus 304 l~~g 307 (328)
T TIGR00233 304 LEPG 307 (328)
T ss_pred HHHH
Confidence 8763
No 6
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3e-64 Score=499.42 Aligned_cols=297 Identities=25% Similarity=0.351 Sum_probs=264.6
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCC
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLS 138 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~ 138 (400)
-.+++||...... .++|.+.+++++++++|+||+||| .|||||+++++.. ++||++ |+.++|+|||+||++.++.+
T Consensus 5 ~~~~~~~~~e~~~-~~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~-~~lq~~-g~~~~i~IaD~ha~~~~~~~ 80 (329)
T PRK08560 5 LELITRNTEEVVT-EEELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKL-ADLQKA-GFKVTVLLADWHAYLNDKGD 80 (329)
T ss_pred HHHHHhCceeecC-HHHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHH-HHHHHC-CCeEEEEEccchhhcCCCCC
Confidence 3567888765544 477777788789999999999999 6999999988886 999995 88999999999999987789
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-chHHHHHHHHhhcCHHHHHHh---hCCC-CCccccccchhhhh
Q 015773 139 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQ 213 (400)
Q Consensus 139 ~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~r~~t~~~~~~~---~g~~-~~~~~g~~~YPllQ 213 (400)
++++++++++++++|+|||+||+++.||.||+|+.+ .+|..++++++++|++++.+. +++. ++.++|+|+||+||
T Consensus 81 ~~~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lq 160 (329)
T PRK08560 81 LEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQ 160 (329)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999865 478889999999999999874 4443 35699999999999
Q ss_pred cCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCc
Q 015773 214 AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293 (400)
Q Consensus 214 aad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~ 293 (400)
|| ||+.++++ +||||.||+||+++|||+|+|+|+.+|..+++++||+|+|+++|||||+|+|+|||+|+
T Consensus 161 aa--------Dil~~~ad---~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~ 229 (329)
T PRK08560 161 VA--------DIFYLDVD---IAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDS 229 (329)
T ss_pred HH--------HHHHhCCC---EEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCC
Confidence 99 68888875 89999999999999999999999999999999999999997679999998889999999
Q ss_pred HHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccCC------------------hHHHHHHHHHHhcCCCC
Q 015773 294 AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED------------------DAELEHIKKEYGAGGML 355 (400)
Q Consensus 294 ~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~------------------~~eleei~~~~~~g~~~ 355 (400)
|++|++||++ |||++. +|+.|++++|+++|..+ .+++++++++|++|+++
T Consensus 230 ~~~I~~KI~k-A~t~~~-----------~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~ 297 (329)
T PRK08560 230 PEEIRRKIKK-AYCPPG-----------EVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLH 297 (329)
T ss_pred HHHHHHHHHh-ccCCCC-----------CcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCC
Confidence 9999999999 999863 45667788999987533 26789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 356 TGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 356 ~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
|++||+.||+.|+++|.|+|+++++-.
T Consensus 298 ~~~lK~~la~~i~~~l~pir~~~~~~~ 324 (329)
T PRK08560 298 PMDLKNAVAEYLIEILEPVREYLEEGP 324 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999998643
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.2e-64 Score=499.72 Aligned_cols=288 Identities=26% Similarity=0.332 Sum_probs=253.2
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
.++|+|++||| .|||||++|++..|++||++ +.+++.|||+||++++ .+++++++++++++++|+|||+||+|++|
T Consensus 2 ~~v~~G~~PTG-~lHLG~~~g~~~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 77 (333)
T PRK00927 2 KRVLSGIQPTG-KLHLGNYLGAIKNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTI 77 (333)
T ss_pred CEEEEeeCCCc-cchHHhHHHHHHHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEE
Confidence 36999999999 59999999999888889996 5566777999999965 59999999999999999999999999999
Q ss_pred Eecccccccc--hHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc
Q 015773 166 FSDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238 (400)
Q Consensus 166 ~~~s~~~~~~--~~~-----~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~ 238 (400)
|.||+|.++. +|. .+.++.|++++++.... +.+++++|+|+||+|||| ||+.+++ |+|||
T Consensus 78 f~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaa--------Dil~~~~---divpv 144 (333)
T PRK00927 78 FVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK--QKENVSAGLFTYPVLMAA--------DILLYKA---DLVPV 144 (333)
T ss_pred EEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHH--------HHHhcCC---CEEee
Confidence 9999998752 222 34556666666655332 246889999999999999 6777876 69999
Q ss_pred ccCchhHHHHHHHHHhhhCC------CCCeeee---cccccCCCCCCCcCCCCCCC--CeeeecCcHHHHHHHhhccccc
Q 015773 239 AIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFS 307 (400)
Q Consensus 239 G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSKS~~n--saI~L~D~~~~i~~KI~k~A~t 307 (400)
|.||+||++||||+|+|+|. ++|..++ +++||||+|+++|||||.|+ |+|||+|+|++|++||++ |+|
T Consensus 145 G~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~t 223 (333)
T PRK00927 145 GEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVT 223 (333)
T ss_pred ccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCC
Confidence 99999999999999999984 5787766 37899999977799999996 799999999999999999 999
Q ss_pred CCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--H
Q 015773 308 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--M 385 (400)
Q Consensus 308 ~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~--~ 385 (400)
++..+.+++++.|++|++|++++|+++|+ ++++++++++|.+|+++|++||+.||+.|+++|.|+|++|++++++ +
T Consensus 224 d~~~~~~~~~~~~~~p~~~~l~~~~~~~~--~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~ 301 (333)
T PRK00927 224 DSERLREIRYDLPNKPEVSNLLTIYSALS--GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAY 301 (333)
T ss_pred CCCcccccccCCCCCCccccHHHHHHHhC--CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99888788899999999999999999995 6789999999999999999999999999999999999999999864 8
Q ss_pred HHHHHhcC
Q 015773 386 VDAFMAVR 393 (400)
Q Consensus 386 ~~~~~~~~ 393 (400)
|++++..+
T Consensus 302 ~~~il~~G 309 (333)
T PRK00927 302 LDEILAEG 309 (333)
T ss_pred HHHHHHHH
Confidence 99988653
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=2.4e-63 Score=492.46 Aligned_cols=288 Identities=27% Similarity=0.383 Sum_probs=251.6
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
.++|||++||| .|||||++++++.|.+||++++ ++|+|||+|+++++..+++++++++++++++|+|||+||+|++|
T Consensus 3 ~~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i 79 (333)
T PRK12282 3 PIILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTI 79 (333)
T ss_pred CEEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEE
Confidence 47999999998 6999999999999889999865 57778999999976789999999999999999999999999999
Q ss_pred Eeccccccc----chHHH---HHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc
Q 015773 166 FSDFDYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238 (400)
Q Consensus 166 ~~~s~~~~~----~~~~~---~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~ 238 (400)
|.||+|.++ ++|.. +.++.|+.++++....+++.+++++|+++||+|||| ||+.+++ |+|||
T Consensus 80 ~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaa--------DIl~~~~---d~vpv 148 (333)
T PRK12282 80 FIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAA--------DITAFKA---TLVPV 148 (333)
T ss_pred EECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHH--------HHHhhCC---CEEEe
Confidence 999999764 33333 446667777776666666778899999999999999 6788887 69999
Q ss_pred ccCchhHHHHHHHHHhhhCC--CCCeee-------ecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCC
Q 015773 239 AIDQDPYFRMTRDVAPRIGY--HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 309 (400)
Q Consensus 239 G~DQd~~~~l~rdla~r~~~--~kp~~l-------~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~ 309 (400)
|.||+||++||||+|+|+|. .+|..+ .+++||||+|+ +|||||++| +|||+|+|++|++||++ |+|++
T Consensus 149 G~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~-~KMSKS~~~-~I~L~D~pe~I~kKI~~-A~td~ 225 (333)
T PRK12282 149 GDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDADTIKKKVMS-MYTDP 225 (333)
T ss_pred ccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCC-CcCCCCCCC-eeeeeCCHHHHHHHHHh-CcCCC
Confidence 99999999999999999993 334322 36799999984 899999976 99999999999999999 99987
Q ss_pred cchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--HHH
Q 015773 310 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVD 387 (400)
Q Consensus 310 ~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~--~~~ 387 (400)
. ..+++.+++|++|++++|+++|..+++++++++++|.+|+++|++||+.||+.|+++|.|+|+||++++++ +|+
T Consensus 226 ~---~~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~ 302 (333)
T PRK12282 226 N---HIRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVL 302 (333)
T ss_pred C---CccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3 24567899999999999999997668899999999999999999999999999999999999999999864 799
Q ss_pred HHHhcC
Q 015773 388 AFMAVR 393 (400)
Q Consensus 388 ~~~~~~ 393 (400)
+++..+
T Consensus 303 ~vl~~G 308 (333)
T PRK12282 303 EILKAG 308 (333)
T ss_pred HHHHHH
Confidence 988653
No 9
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=3.5e-62 Score=474.66 Aligned_cols=265 Identities=40% Similarity=0.606 Sum_probs=242.7
Q ss_pred eEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015773 87 YLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 166 (400)
Q Consensus 87 ~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 166 (400)
++|||++||| +|||||+++++..|++||++ |+.++|+|||+||++.+..+++++++++++++++++|||+||++++||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999999 89999999966666999997 899999999999999766799999999999999999999999999999
Q ss_pred ecccccccchHHHHHHHHhhcCHHHHHHhhCCCC------CccccccchhhhhcCCCCCCCcccccccCCCCceeecccc
Q 015773 167 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 240 (400)
Q Consensus 167 ~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~~~------~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~ 240 (400)
.||+|. .++...+.+++.+|++++.+..+|++ ++++|+|+||+|||| ||+.+++ |+||+|.
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaa--------Dil~~~~---~~vpvG~ 145 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAA--------DILLYKA---CLVPVGI 145 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHh--------hhhhccC---CEEeecc
Confidence 999997 46666778999999999999888865 889999999999999 6777776 7999999
Q ss_pred CchhHHHHHHHHHhhhC------CCCCeeeec--ccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcch
Q 015773 241 DQDPYFRMTRDVAPRIG------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 312 (400)
Q Consensus 241 DQd~~~~l~rdla~r~~------~~kp~~l~~--~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t 312 (400)
||+||++++||+|+|+| +++|..+++ ++||+|+|+++|||||+|+|+|||+|+|++|++||++ |+|++..+
T Consensus 146 DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~-a~td~~~~ 224 (280)
T cd00806 146 DQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMK-AATDGGRT 224 (280)
T ss_pred ccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHh-ccCCCCCc
Confidence 99999999999999999 789999988 9999999976899999997799999999999999999 99998764
Q ss_pred hHhhhhcCCCcccchHHHHHhhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 015773 313 VELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 370 (400)
Q Consensus 313 ~e~~~~~g~~p~v~v~~~~l~~f~-~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~ 370 (400)
++++.+++|++|++++|+.+|+ .+.++++++ .+|++|++++++||+.||+.|+++
T Consensus 225 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 225 --EHRRDGGGPGVSNLVEIYSAFFNDDDEELEEI-DEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred --eecCCCCCCCcChHHHHHHHHhCCCHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHhC
Confidence 6789999999999999999875 467788888 899999999999999999999864
No 10
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-61 Score=479.37 Aligned_cols=284 Identities=18% Similarity=0.248 Sum_probs=248.1
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
.++|+|++||| .||||||+++++.|.++|+.+|+.+++.|||+||++ ...+++++++++++++++|+|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt-~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALN-AVHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhcc-CCCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 47999999998 799999999999989999888988888899999976 4579999999999999999999999999999
Q ss_pred Eecccccccch--H-H----HHHHHHhhcCHHHHHHh-----hCCCCCccccccchhhhhcCCCCCCCcccccccCCCCc
Q 015773 166 FSDFDYVGGAF--Y-K----NMVKVAKCVTYNKVVGI-----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 233 (400)
Q Consensus 166 ~~~s~~~~~~~--~-~----~~~~l~r~~t~~~~~~~-----~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~ 233 (400)
|.||++.++.- | . .+.+|.|++++++.... .++.+++++|+++||+|||| |||.+++
T Consensus 82 f~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAA--------DIl~~~~--- 150 (332)
T PRK12556 82 YRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAA--------DILLFQA--- 150 (332)
T ss_pred EECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhh--------hhhhccC---
Confidence 99999986521 1 1 24567788887766442 23456789999999999999 6788887
Q ss_pred eeeccccCchhHHHHHHHHHhhhC------CCCCeee---ecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcc
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 304 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l---~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~ 304 (400)
|+||||.||+||++||||+|+||| +++|..+ +++++|||+| +|||||++| +|+|+|+|++|++||++
T Consensus 151 d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~~n-~I~L~D~p~~I~kKI~k- 226 (332)
T PRK12556 151 THVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSYGN-VIPLFAEQEKLRKLIFK- 226 (332)
T ss_pred CEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCC--CCCCCCCCC-cccccCCHHHHHHHHHH-
Confidence 699999999999999999999999 5778776 6899999998 699999976 89999999999999999
Q ss_pred cccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH
Q 015773 305 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 384 (400)
Q Consensus 305 A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~ 384 (400)
|+|++... +.+++|++|++++|+++|+. ++++++++++|++ +++|++||+.||+.|+++|.|+|++++++..+
T Consensus 227 a~Td~~~~-----~~~~~p~~~~l~~i~~~~~~-~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~~~~~~ 299 (332)
T PRK12556 227 IKTDSSLP-----NEPKDPETSALFTIYKEFAT-EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYAMYMNE 299 (332)
T ss_pred hccCCCcc-----cCCCCcchhHHHHHHHHHCC-chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998641 24789999999999999963 4789999999987 59999999999999999999999999999864
Q ss_pred --HHHHHHhcC
Q 015773 385 --MVDAFMAVR 393 (400)
Q Consensus 385 --~~~~~~~~~ 393 (400)
+|++++..+
T Consensus 300 ~~~~~~il~~G 310 (332)
T PRK12556 300 PSLLDEALEKG 310 (332)
T ss_pred HHHHHHHHHHH
Confidence 899988653
No 11
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.8e-59 Score=468.82 Aligned_cols=284 Identities=21% Similarity=0.284 Sum_probs=246.2
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
.++|+||+||| .||||||++.+..|++||+ ++.++|.|||+||++. ..+++++++++++++++|+|||+||+|+.|
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai~~~v~lQ~--~~~~~~~IADlHAlt~-~~~~~~lr~~~~~~~a~~lA~GlDP~ks~i 122 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAIKNWVALQE--TYDTFFCVVDLHAITL-PHDPRELGKATRSTAAIYLACGIDPSKASV 122 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHHHHHHHHhc--cCCEEEEEecHHHhhC-CCCHHHHHHHHHHHHHHHHHcCcCccceEE
Confidence 46999999998 7999999999998899998 4556777899999985 469999999999999999999999999999
Q ss_pred Eeccccccc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc
Q 015773 166 FSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238 (400)
Q Consensus 166 ~~~s~~~~~--~~~~-----~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~ 238 (400)
|.||++.++ .+|. .+.+|.|+++++++.+..+ .+++++|.|+||+|||| |||.++++ +|||
T Consensus 123 f~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAA--------DILl~~a~---~VPV 190 (389)
T PLN02886 123 FVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMAS--------DILLYQAD---LVPV 190 (389)
T ss_pred EEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHh--------hhhhcCCC---eEEE
Confidence 999999875 2332 2568999999999887665 35789999999999999 78889885 8999
Q ss_pred ccCchhHHHHHHHHHhhhCC------------------CCCeeee---cccccCCCCCCCcCCCCCCC--CeeeecCcHH
Q 015773 239 AIDQDPYFRMTRDVAPRIGY------------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAK 295 (400)
Q Consensus 239 G~DQd~~~~l~rdla~r~~~------------------~kp~~l~---~~~lp~L~G~~~KMSKS~~n--saI~L~D~~~ 295 (400)
|.||+||++||||+|+|||. +.|..++ +.+||+|+|+.+|||||+|| |+|||+|+|+
T Consensus 191 G~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e 270 (389)
T PLN02886 191 GEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPD 270 (389)
T ss_pred ccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHH
Confidence 99999999999999999984 3555554 45899999876899999985 8999999999
Q ss_pred HHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHH
Q 015773 296 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 375 (400)
Q Consensus 296 ~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~ 375 (400)
+|++||++ |+||+..+++ ....++|++++++.++..| ++.++++++++|+ + +++++||+.||+.|+++|.|+|
T Consensus 271 ~I~kKI~~-a~TD~~~~i~--~~~p~~p~v~nl~~i~~~~--~~~~~eei~~~~~-~-~~~g~~K~~Lae~I~~~L~Pir 343 (389)
T PLN02886 271 VIANKIKR-CKTDSFPGLE--FDNPERPECNNLLSIYQLV--TGKTKEEVLAECG-D-MRWGDFKPLLTDALIEHLSPIQ 343 (389)
T ss_pred HHHHHHhc-CCCCCCCCcc--CCCCCCcccccHHHHHHHc--cCCCHHHHHHHhc-C-CCCchHHHHHHHHHHHHHHHHH
Confidence 99999999 9999986554 2455778888888888877 4677899999997 3 7999999999999999999999
Q ss_pred HHHHHhhHH--HHHHHHhc
Q 015773 376 VARAAVTDE--MVDAFMAV 392 (400)
Q Consensus 376 ~~~~~~~~~--~~~~~~~~ 392 (400)
+||+++.++ +|++++..
T Consensus 344 er~~~l~~d~~~l~~iL~~ 362 (389)
T PLN02886 344 VRYEEIMSDPSYLDSVLKE 362 (389)
T ss_pred HHHHHHHcCHHHHHHHHHH
Confidence 999999864 89998865
No 12
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.1e-59 Score=465.77 Aligned_cols=284 Identities=21% Similarity=0.234 Sum_probs=244.5
Q ss_pred eEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 015773 87 YLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 166 (400)
Q Consensus 87 ~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~ 166 (400)
++|+|++||| .||||||++++..|..+|+ +..+++.|||+||++.+..+++++++++.+++++|+|||+||+|+.||
T Consensus 4 ~v~sGiqPSG-~~HLGnylG~ik~wv~lq~--~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if 80 (398)
T PRK12283 4 RVLSGMRPTG-RLHLGHYHGVLKNWVKLQH--EYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLF 80 (398)
T ss_pred EEEEEeCCCC-cchHHHHHHHHHHHHHHhc--CCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 6999999998 7999999999988777887 456677789999999776799999999999999999999999999999
Q ss_pred ecccccccc--hHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccc
Q 015773 167 SDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 239 (400)
Q Consensus 167 ~~s~~~~~~--~~~-----~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G 239 (400)
.||+++++. +|. .+.++.|++++++...+.+..++.++|.++||+|||| |||.+++ ++||||
T Consensus 81 ~QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAA--------DILl~~a---~iVPVG 149 (398)
T PRK12283 81 IQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSA--------DILIYRA---GLVPVG 149 (398)
T ss_pred ECCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHH--------HHHhcCC---CEeeec
Confidence 999998651 221 3456777777776655432345789999999999999 7888887 589999
Q ss_pred cCchhHHHHHHHHHhhhCC-------------------------------------------------------------
Q 015773 240 IDQDPYFRMTRDVAPRIGY------------------------------------------------------------- 258 (400)
Q Consensus 240 ~DQd~~~~l~rdla~r~~~------------------------------------------------------------- 258 (400)
.||+||++||||+|+|||.
T Consensus 150 ~DQ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (398)
T PRK12283 150 EDQVPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDR 229 (398)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhh
Confidence 9999999999999999764
Q ss_pred ---------------CCCee--eecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCC
Q 015773 259 ---------------HKPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGA 321 (400)
Q Consensus 259 ---------------~kp~~--l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~ 321 (400)
+.|.. .++++||||+| +|||||.+| +|+|+|+|++|++||++ |+||+. ++++..||
T Consensus 230 ~~~~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI~~-a~TDs~---~~~~~~~g 302 (398)
T PRK12283 230 ERLFGYLEGAGKIILPEPQALLTEASKMPGLDG--QKMSKSYGN-TIGLREDPESVTKKIRT-MPTDPA---RVRRTDPG 302 (398)
T ss_pred ccccccccccCCcccCCCcccccCCCcccCCCC--CcCCCCCCC-eeeCcCCHHHHHHHHHh-CCCCCc---ccccCCCC
Confidence 23433 24689999987 799999765 99999999999999999 999854 56788899
Q ss_pred CcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--HHHHHHhc
Q 015773 322 NLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAV 392 (400)
Q Consensus 322 ~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~--~~~~~~~~ 392 (400)
+|++|++++|+.+|+ ++++++++.++|++|+++||+||+.||+.|+++|.|+|+|++++.++ +|++++..
T Consensus 303 ~Pe~~nl~~i~~~~~-~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~ 374 (398)
T PRK12283 303 DPEKCPVWQLHQVYS-DEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVAD 374 (398)
T ss_pred CCCcCHHHHHHHHhC-CChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999994 45579999999999999999999999999999999999999999864 78888765
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-58 Score=464.36 Aligned_cols=297 Identities=19% Similarity=0.256 Sum_probs=250.0
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 136 (400)
-.++.||..... ..++|.+.+++++++++|+|++||| .|||||.+.-+..|++||++ |+.++|+|||+||+++++
T Consensus 41 ~~~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~-G~~v~~~IaD~hA~~~~~~g 117 (383)
T PTZ00126 41 VKLCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKA-GCVFVFWVADWFALLNNKMG 117 (383)
T ss_pred HHHHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhC-CCeEEEEEccceeecCCCCC
Confidence 356778865444 4566777778889999999999999 69999943222234889986 888999999999999764
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc-c--chHHHHHHHHhhcCHHHHHHh---hCCC--CCccccccc
Q 015773 137 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G--AFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKVS 208 (400)
Q Consensus 137 ~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~--~~~~~~~~l~r~~t~~~~~~~---~g~~--~~~~~g~~~ 208 (400)
.++++++++++++++.|+|||+||+++.||.||+|.. + .+|..++.+++++|+++|++. +++. ++.++|+|+
T Consensus 118 ~~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~ 197 (383)
T PTZ00126 118 GDLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQIL 197 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhh
Confidence 6899999999999999999999999999999999763 2 578889999999999999753 4443 457899999
Q ss_pred hhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCC-CCCeeeecccccCCCCCCCcCCCCCCCCe
Q 015773 209 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSA 287 (400)
Q Consensus 209 YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~G~~~KMSKS~~nsa 287 (400)
||+|||| ||+.+++| ++|+|.||+||++||||+|+++|+ ++|.++++++||||+++++|||||+||++
T Consensus 198 YP~LQaa--------Dil~l~ad---ivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~ 266 (383)
T PTZ00126 198 YPCMQCA--------DIFYLKAD---ICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSA 266 (383)
T ss_pred hhHHHhh--------hhhccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCe
Confidence 9999999 67888886 789999999999999999999995 68888899999999754689999999999
Q ss_pred eeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhc--------c-C---------ChHHHHHHHHHH
Q 015773 288 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF--------L-E---------DDAELEHIKKEY 349 (400)
Q Consensus 288 I~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f--------~-~---------~~~eleei~~~~ 349 (400)
|||+|+|++|++||++ |||++... ++|| ++.|++++ . . +.+++++++++|
T Consensus 267 I~L~Dspe~I~kKI~k-A~t~p~~~-------~~np----v~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y 334 (383)
T PTZ00126 267 IFMEDSEEDVNRKIKK-AYCPPGVI-------EGNP----ILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDY 334 (383)
T ss_pred ecCCCCHHHHHHHHHh-CcCCCCCC-------CCCc----chhhhhhcccccccceeEeccccccCccCcCCHHHHHHHH
Confidence 9999999999999999 99986531 3454 45555542 1 1 225899999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015773 350 GAGGMLTGEVKQRLAKVLTELVERHQVARAAV 381 (400)
Q Consensus 350 ~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~ 381 (400)
++|.++|++||+.||+.|+++|.|+|++++.-
T Consensus 335 ~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 335 LSGALHPGDLKPALAKYLNLMLQPVRDHFQNN 366 (383)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999854
No 14
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-58 Score=465.82 Aligned_cols=284 Identities=19% Similarity=0.195 Sum_probs=244.4
Q ss_pred ceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015773 85 KFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 164 (400)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 164 (400)
..++||||+||| .||||||++.++.|.++|+..++.+++.|||+||++ +..+++++++++.+++++|+|||+||+|+.
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT-~~~dp~~lr~~~~e~aa~~LA~GlDPek~~ 79 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALI-KCDDPARIQRSTLEIAATWLAAGLDPERVT 79 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhcc-CCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 357999999998 799999999999989998756778888899999998 457999999999999999999999999999
Q ss_pred EEecccccccc--hHH-----HHHHHHhhcCHHHHHHhh---CCC--CCccccccchhhhhcCCCCCCCcccccccCCCC
Q 015773 165 IFSDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL 232 (400)
Q Consensus 165 i~~~s~~~~~~--~~~-----~~~~l~r~~t~~~~~~~~---g~~--~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~ 232 (400)
||.||+++++. +|. .+.+|.|++++++..... |+. +++++|.|+||+|||| |||.++++
T Consensus 80 if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAA--------DILly~ad- 150 (431)
T PRK12284 80 FYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAA--------DILMFNAH- 150 (431)
T ss_pred EEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHh--------hhhhcCCC-
Confidence 99999998752 222 356788888888765432 332 4689999999999999 78889884
Q ss_pred ceeeccccCchhHHHHHHHHHhhhCC-------CCCeee---ecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhh
Q 015773 233 RCLIPCAIDQDPYFRMTRDVAPRIGY-------HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 302 (400)
Q Consensus 233 ~~~vp~G~DQd~~~~l~rdla~r~~~-------~kp~~l---~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~ 302 (400)
+||||.||.||++||||||+|||+ +.|..+ ++++||||+| +|||||.+| +|+|+|+|++|++||+
T Consensus 151 --~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~~n-~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 151 --KVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSYDN-TIPLFAPREELKKAIF 225 (431)
T ss_pred --EEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCC--ccccCCCCC-EeeecCCHHHHHHHHh
Confidence 899999999999999999999983 345443 3689999997 799999976 9999999999999999
Q ss_pred cccccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 303 KYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 303 k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
+ |+||+..+. ..++|++|++++|+++|+ +.+++++++++|..| ++|++||+.|++.|+++|.|+|+|++++.
T Consensus 226 ~-A~TDs~~~~-----~~~~pe~snLl~i~~~~~-~~~~~eel~~~~~~g-~~~g~~K~~Lae~i~~~L~PiRer~~~l~ 297 (431)
T PRK12284 226 S-IVTDSRAPG-----EPKDTEGSALFQLYQAFA-TPEETAAFRQALADG-IGWGDAKQRLFERIDRELAPMRERYEALI 297 (431)
T ss_pred c-CCCCCCCCC-----CCCCCCcchHHHHHHHhC-CcchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999986532 257899999999999995 246799999999856 99999999999999999999999999998
Q ss_pred HH--HHHHHHhc
Q 015773 383 DE--MVDAFMAV 392 (400)
Q Consensus 383 ~~--~~~~~~~~ 392 (400)
++ +|++++..
T Consensus 298 ~d~~~l~~iL~~ 309 (431)
T PRK12284 298 ARPADIEDILLA 309 (431)
T ss_pred cCHHHHHHHHHH
Confidence 64 89998865
No 15
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-57 Score=462.67 Aligned_cols=290 Identities=22% Similarity=0.271 Sum_probs=252.3
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCccccccc----
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK---- 135 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~---- 135 (400)
.|.+||+|++|++++++.+.+++++|+++|+||+|||++|||||+++++++ +|||++ |+.++++|||+|+.+.+
T Consensus 8 ~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l-~~lq~~-G~~~~~ligd~ta~igDpsgk 85 (410)
T PRK13354 8 QLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKL-KRFQDA-GHRPVILIGGFTGKIGDPSGK 85 (410)
T ss_pred HHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHH-HHHHHc-CCeEEEEEcccccccCCCCcc
Confidence 456799999999999999888888999999999999988999999999998 999997 56667777888876653
Q ss_pred ----C-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccchHHHHH-HHHhhcCHHHHHHh------hCCCCCcc
Q 015773 136 ----N-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI------FGFTGEDH 203 (400)
Q Consensus 136 ----~-~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~-~l~r~~t~~~~~~~------~g~~~~~~ 203 (400)
+ ++.+++++|+..+.+++.+ |+||++++|+.||+|+++..|..++ .+++++|+++|+++ ++.+++++
T Consensus 86 ~~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is 164 (410)
T PRK13354 86 SKERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGIS 164 (410)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCc
Confidence 2 7899999999887777776 8999999999999999888888898 59999999999864 22245789
Q ss_pred ccccchhhhhcCCCCCCCcccccccCCCCceee-ccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCC
Q 015773 204 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 282 (400)
Q Consensus 204 ~g~~~YPllQaad~~~~~~~dil~~~~~~~~~v-p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS 282 (400)
+|+|+||+|||| |++.+..+++|.+ |+|.||++|++++||+|+|+|..+|..++.|+||+++| .|||||
T Consensus 165 ~~ef~YpllQa~--------D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS 234 (410)
T PRK13354 165 FTEFFYPLLQAY--------DFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKS 234 (410)
T ss_pred hhhhccHHHHhh--------hHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCC--CccCCC
Confidence 999999999999 5677744455655 79999999999999999999999999999999999997 599999
Q ss_pred CCCCeeeecCc---HHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCChHH
Q 015773 283 DPNSAIYVTDS---AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGE 358 (400)
Q Consensus 283 ~~nsaI~L~D~---~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~~~~ 358 (400)
.+| +|||+|+ |+++++||++ + ||.++ ++||++|+. +.+++++|+++|++|. ++++
T Consensus 235 ~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D~~v-~~~l~~~t~l~~~ei~~l~~~~~~~~-~~~~ 293 (410)
T PRK13354 235 AGG-AIWLDPEKTSPYEFYQFWMN-I-----------------DDRDV-VKYLKLFTDLSPDEIDELEAQLETEP-NPRD 293 (410)
T ss_pred CCC-ceeccCCCCCHHHHHHHHHc-C-----------------ChHHH-HHHHHHHhCCCHHHHHHHHHHHhcCC-ChHH
Confidence 876 9999999 9999999998 2 44455 899999874 7899999999999984 5999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhH
Q 015773 359 VKQRLAKVLTELVERHQVARAAVTD 383 (400)
Q Consensus 359 lK~~La~~i~~~l~~~~~~~~~~~~ 383 (400)
+|+.||++|++++|+.++..++...
T Consensus 294 ~Kk~LA~~v~~~vhg~~~~~~a~~~ 318 (410)
T PRK13354 294 AKKVLAEEITKFVHGEEAAEEAEKI 318 (410)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999999999999999998776553
No 16
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.2e-57 Score=457.48 Aligned_cols=289 Identities=23% Similarity=0.277 Sum_probs=247.2
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCccccccc---
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK--- 135 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~--- 135 (400)
..|.+||++++|+|++++++.++ ++++++|+||+|||++|||||+++++.+ ++||++ |+.++++|||+|+++.+
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l-~~lQ~~-G~~~~~ligd~ta~igDpsg 84 (408)
T PRK05912 8 EELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKL-RRFQDA-GHKPIALIGGFTGMIGDPSG 84 (408)
T ss_pred HHHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHH-HHHHHC-CCcEEEEEcCceeEcCCCCC
Confidence 45667999999999999999987 5899999999999988999999998887 999996 66667778888888753
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHcCCCCCc--eEEEecccccccchHHHHHH-HHhhcCHHHHHHhhC------CCC
Q 015773 136 ------NLSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFG------FTG 200 (400)
Q Consensus 136 ------~~~~e~i~~~~~~~~~~ilA~G~dp~k--t~i~~~s~~~~~~~~~~~~~-l~r~~t~~~~~~~~g------~~~ 200 (400)
.++.+++++|+..+ ...+|+|+||++ +.||.||+|+++..|..+++ +++++|+++|+++.. ..+
T Consensus 85 k~~~r~~l~~e~i~~n~~~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~ 163 (408)
T PRK05912 85 KSETRKLLTREQVAENAETI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQ 163 (408)
T ss_pred CchhhccCCHHHHHHHHHHH-HHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCC
Confidence 26889999999654 566699999999 99999999998888888888 999999999987533 235
Q ss_pred CccccccchhhhhcCCCCCCCcccccccCCCCcee-eccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcC
Q 015773 201 EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 279 (400)
Q Consensus 201 ~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~-vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KM 279 (400)
++|+|+|+||+|||| ||+.+..+++|. +|+|.||++|++++||+|+|+|..++..++.|+||+++| +||
T Consensus 164 ~is~~ef~Yp~LQa~--------D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G--~KM 233 (408)
T PRK05912 164 GISFTEFLYPLLQGY--------DFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDG--KKM 233 (408)
T ss_pred CCchhhhhhHHHHHh--------hHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCC--Ccc
Confidence 899999999999999 577774445564 578999999999999999999987888888999999997 899
Q ss_pred CCCCCCCeeeecC---cHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCC
Q 015773 280 SASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGML 355 (400)
Q Consensus 280 SKS~~nsaI~L~D---~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~ 355 (400)
|||.+ ++|||+| +|+++++||++ + + ++++ .+||++|+. +.+++++|.++|++|. +
T Consensus 234 sKS~~-naI~L~d~~tsp~~i~qki~~-~------~---------D~~v---~~~l~~~t~~~~~ei~~l~~~~~~g~-~ 292 (408)
T PRK05912 234 GKSEG-NAVWLDEEKTSPYEMYQKWMN-I------S---------DADV---WRYLKLLTFLSLEEIEELEEELAEGP-N 292 (408)
T ss_pred cCCCC-CceeCCCCCCCHHHHHHHHhc-C------C---------hHHH---HHHHHHHhcCCHHHHHHHHHHHhcCC-C
Confidence 99985 4999999 99999999999 3 1 3444 566666653 7889999999999886 9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 356 TGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 356 ~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
++++|+.||++|++++|+.++..++..
T Consensus 293 ~~~~Kk~LA~~v~~~lhg~~~~~~a~~ 319 (408)
T PRK05912 293 PREAKKVLAEEITALVHGEEAAEAAEE 319 (408)
T ss_pred hHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 999999999999999999988766544
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.3e-56 Score=431.82 Aligned_cols=249 Identities=27% Similarity=0.360 Sum_probs=226.4
Q ss_pred eEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC---------CCHHHHHHHHHHHHHHHHHcC
Q 015773 87 YLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACG 157 (400)
Q Consensus 87 ~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~---------~~~e~i~~~~~~~~~~ilA~G 157 (400)
++|+||+|||++|||||+++++.+ +|||++ |+.++|+|||+||+++++ .+++++++|+.+++++++|+|
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~-~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKL-RDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHH-HHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 699999999988999999998876 999996 899999999999999754 799999999999999999999
Q ss_pred CC--CCceEEEecccccccchHHHHHHHHhhcCHHHHHHhhCC------CCCccccccchhhhhcCCCCCCCcccccccC
Q 015773 158 FD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 229 (400)
Q Consensus 158 ~d--p~kt~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~------~~~~~~g~~~YPllQaad~~~~~~~dil~~~ 229 (400)
++ |+++.||.||+|+++.+|.+++++++++++++|+++.++ .+++++|+|+||+|||| ||+.++
T Consensus 80 ~~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaa--------Di~~l~ 151 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAY--------DFVYLD 151 (269)
T ss_pred ccCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHh--------hHHHHh
Confidence 96 999999999999988889999999999999999987654 35789999999999999 677787
Q ss_pred CCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCe-eeecCcHHHHHHHhhcccccC
Q 015773 230 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKINKYAFSG 308 (400)
Q Consensus 230 ~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsa-I~L~D~~~~i~~KI~k~A~t~ 308 (400)
+ |++|||.||+||++++||+|+|+|+.+|..+++++||+|+| +|||||.+|+. |++.|+|++|++||++ |+|+
T Consensus 152 ~---~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~ 225 (269)
T cd00805 152 V---DLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP 225 (269)
T ss_pred C---CeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH
Confidence 6 69999999999999999999999999999999999999998 69999999966 7999999999999999 9987
Q ss_pred CcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 015773 309 GQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 370 (400)
Q Consensus 309 ~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~ 370 (400)
++ ++|+++|+. +++++++++++|++|.+ ++++|+.||++|+++
T Consensus 226 ---------------~v---~~~l~~~~~~~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~l 269 (269)
T cd00805 226 ---------------DV---LEFLKLFTFLDYEEIEELEEEHAEGPL-PRDAKKALAEELTKL 269 (269)
T ss_pred ---------------HH---HHHHHHHHcCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC
Confidence 13 566666543 78999999999999976 999999999999863
No 18
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-54 Score=459.85 Aligned_cols=308 Identities=19% Similarity=0.246 Sum_probs=255.8
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhh-hHHHHHHHHHHHhcCCCcEEEEecCcccccccC-
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh-~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 136 (400)
..+++|+.-... ..++|.+.+++|+++++|+||+||| .||||| ++.++..|..+| .|+.++++|||+||+++++
T Consensus 7 ~~ll~r~~~Evi-~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q--~g~~~~~lIAD~HAlt~~~~ 82 (682)
T PTZ00348 7 YKLLRSVGEECI-QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQ--AGCEFVFWVADWFALMNDKV 82 (682)
T ss_pred HHHHhcCceeec-CHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHh--CCCeEEEEEcchhhhcCCCC
Confidence 346677765433 4566777778888999999999999 699999 466666644455 3788889999999999653
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc-cc--chHHHHHHHHhhcCHHHHHHh---hCCCC-Cccccccc
Q 015773 137 -LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKCVTYNKVVGI---FGFTG-EDHIGKVS 208 (400)
Q Consensus 137 -~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~~--~~~~~~~~l~r~~t~~~~~~~---~g~~~-~~~~g~~~ 208 (400)
.++++++.++.++++.|+|+|+||+|+.||.||+|. ++ .+|..++.+++++|++++++. +|+.+ ++++|+++
T Consensus 83 ~~~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~ 162 (682)
T PTZ00348 83 GGELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVL 162 (682)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHh
Confidence 588999988899999999999999999999999854 33 578888999999999999875 45544 58999999
Q ss_pred hhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCC-CCCeeeecccccCCCCCCCcCCCCCCCCe
Q 015773 209 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSA 287 (400)
Q Consensus 209 YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~-~kp~~l~~~~lp~L~G~~~KMSKS~~nsa 287 (400)
||+|||| ||+.+++| +||||.||+||++||||+|+++|. ++|.++++++||||+|+++|||||+|+|+
T Consensus 163 YPvLQAA--------DIl~l~ad---ivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~na 231 (682)
T PTZ00348 163 YPLMQCA--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSA 231 (682)
T ss_pred hhHHHhh--------cccccCCC---EEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCe
Confidence 9999999 67778875 799999999999999999999995 57888889999999976689999999889
Q ss_pred eeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCc----ccchHHHHHhhccC--C-------h---HHHHHHHHHHhc
Q 015773 288 IYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL----EVDIPVKYLSFFLE--D-------D---AELEHIKKEYGA 351 (400)
Q Consensus 288 I~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p----~v~v~~~~l~~f~~--~-------~---~eleei~~~~~~ 351 (400)
|||+|+|++|++||++ |||++..........+|+| +.+++++|++++.. . + +++++++++|++
T Consensus 232 I~L~Dspe~I~kKI~k-A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~ 310 (682)
T PTZ00348 232 IFMEDTEEDVARKIRQ-AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVS 310 (682)
T ss_pred ecccCCHHHHHHHHHh-CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhc
Confidence 9999999999999999 9999742100112345666 66788888888631 1 2 678999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 352 GGMLTGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 352 g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
|.++|++||+.||+.|+++|.|+|++++.-.
T Consensus 311 g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~ 341 (682)
T PTZ00348 311 DEVSEEALKSCLIDEVNALLEPVRQHFASNP 341 (682)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 9999999999999999999999999998654
No 19
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=4.6e-56 Score=434.66 Aligned_cols=273 Identities=33% Similarity=0.500 Sum_probs=236.8
Q ss_pred hCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--CCHHHHHHHHHHHHHH--HHHcC
Q 015773 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACG 157 (400)
Q Consensus 82 ~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~--ilA~G 157 (400)
+++++++||||+|||. |||||+++++.+ +|||+ .|+.++|+|||+||++.++ .+++.++.++.+++.. ++|+|
T Consensus 2 ~~~~~~~y~G~~PTg~-lHlG~l~~~~~~-~~lq~-~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g 78 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGD-LHLGHLVPIMKL-IWLQK-AGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALG 78 (292)
T ss_dssp THSSEEEEEEEESSSS--BHHHHHHHHHH-HHHHH-TTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcEEEEeECCCCc-ccchHHHHHHHH-HHHHh-cCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999999995 999999999999 99999 5999999999999999875 4899999999999988 99999
Q ss_pred CCCCceEEEecccccccch-HHHHHHHHhhcCHHHHHHh------hCCCCCccccccchhhhhcCCCCCCCcccccccCC
Q 015773 158 FDVTKTFIFSDFDYVGGAF-YKNMVKVAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 230 (400)
Q Consensus 158 ~dp~kt~i~~~s~~~~~~~-~~~~~~l~r~~t~~~~~~~------~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~ 230 (400)
+||+++.||.||+|.++.. +..+..+++..+++++.++ ++.++++++|+|+||+|||| |++.+++
T Consensus 79 ~d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaa--------D~~~l~~ 150 (292)
T PF00579_consen 79 LDPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAA--------DILLLKA 150 (292)
T ss_dssp SHTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHH--------HHHHTTH
T ss_pred cCccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEccccccc--------ceeeecc
Confidence 9999999999999987643 3334456766666666554 44446899999999999999 7888887
Q ss_pred CCceeeccccCchhHHHHHHHHHhhhCCC----CCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccc
Q 015773 231 HLRCLIPCAIDQDPYFRMTRDVAPRIGYH----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 306 (400)
Q Consensus 231 ~~~~~vp~G~DQd~~~~l~rdla~r~~~~----kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~ 306 (400)
+ ++|||.||+||++++||+|+|+|.. +|.+++++++|+|+|. +|||||.||++|||+|++++|++||++ |+
T Consensus 151 ~---~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~-a~ 225 (292)
T PF00579_consen 151 D---LVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKK-AF 225 (292)
T ss_dssp S---EEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHH-SH
T ss_pred c---cccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHH-Hh
Confidence 5 8999999999999999999999987 9999999999999984 499999999999999999999999999 99
Q ss_pred cCCcchhHhhhhcCCCcccch-HHHHHhhccCCh--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 015773 307 SGGQESVELHRKLGANLEVDI-PVKYLSFFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372 (400)
Q Consensus 307 t~~~~t~e~~~~~g~~p~v~v-~~~~l~~f~~~~--~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~ 372 (400)
|++.. +.++..++.|.+++ +++++..+..++ .+++++.++|.+|.++++++|+++++.++++|+
T Consensus 226 ~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 226 CDPDR--ENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp TSTTS--HHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred hCCCc--ccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 99987 55566777888888 778887775433 378999999999999999999999999999874
No 20
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.4e-55 Score=421.42 Aligned_cols=251 Identities=21% Similarity=0.273 Sum_probs=218.1
Q ss_pred eEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC---------CCHHHHHHHHHHHHHHHHHcC
Q 015773 87 YLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACG 157 (400)
Q Consensus 87 ~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~---------~~~e~i~~~~~~~~~~ilA~G 157 (400)
.+|+||+|||++|||||++|++.+ +|||++ |+.++++|||+||++.++ ++.+++++|+.+++++++|+|
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~-~~lq~~-g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g 78 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTF-RRFQHA-GHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVG 78 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHH-HHHHHC-CCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 489999999978999999996666 999995 777888899999998653 289999999999999999999
Q ss_pred CC--CCceEEEeccccccc-chHHHHHHHHhhcCHHHHHHhhCCC----CCccccccchhhhhcCCCCCCCcccccccCC
Q 015773 158 FD--VTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 230 (400)
Q Consensus 158 ~d--p~kt~i~~~s~~~~~-~~~~~~~~l~r~~t~~~~~~~~g~~----~~~~~g~~~YPllQaad~~~~~~~dil~~~~ 230 (400)
+| |++++||.||+|.+. .++..+..+++++|+++|+++.+|+ +++++|+|+||+|||| ||+.+++
T Consensus 79 ~d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaa--------D~l~l~~ 150 (273)
T cd00395 79 IFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAA--------DFLLLNT 150 (273)
T ss_pred CcCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHH--------HHHHHhc
Confidence 99 999999999999865 3444455699999999999988765 3899999999999999 6777877
Q ss_pred CCce-eeccccCchhHHHHHHHHHhhhC-CCCCeeeecccccCCCCCCCcCCCCCCCCeee---ecCcHHHHHHHhhccc
Q 015773 231 HLRC-LIPCAIDQDPYFRMTRDVAPRIG-YHKPALIESSFFPALQGETGKMSASDPNSAIY---VTDSAKAIKNKINKYA 305 (400)
Q Consensus 231 ~~~~-~vp~G~DQd~~~~l~rdla~r~~-~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~---L~D~~~~i~~KI~k~A 305 (400)
+++| +||+|.||+||++++||+|+|+| +++|.+++.++||+|+| .|||||.+| +|| +.|+|++|++||++ |
T Consensus 151 ~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~~~-~i~l~~~~dsp~~i~~ki~~-a 226 (273)
T cd00395 151 TEGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDG--PKFGKSESG-PKWLDTEKTSPYEFYQFWIN-A 226 (273)
T ss_pred ccCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCC--CcCCCCCCC-CccccccCCCHHHHHHHHHc-c
Confidence 6777 88999999999999999999997 57899999999999998 599999998 666 58999999999999 7
Q ss_pred ccCCcchhHhhhhcCCCcccchHHHHHhhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 015773 306 FSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 370 (400)
Q Consensus 306 ~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~-~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~ 370 (400)
+ .+.++.|+++|+ .+.+++++|++++.+| .++++||+.||++|+++
T Consensus 227 ~------------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~-~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 227 V------------------DSDVINILKYFTFLSKEEIERLEQEQYEA-PGYRVAQKTLAEEVTKT 273 (273)
T ss_pred c------------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Confidence 6 123367777775 3789999999999887 57899999999999864
No 21
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-51 Score=383.75 Aligned_cols=288 Identities=22% Similarity=0.296 Sum_probs=247.6
Q ss_pred ceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCC--cEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 015773 85 KFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKV--PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 162 (400)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~--~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~k 162 (400)
+-++++|++||| ++|||||++.+..|..||+.++. .+.+.|+|.||.+.- .++.+++++..+.++.++|||+||+|
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp-~dp~~lrq~~~dm~A~lLAcGIdp~K 90 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVP-QDPAELRQATHDMAASLLACGIDPEK 90 (347)
T ss_pred cceeEeccCCCC-CchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCC-CChHHHHHHHHHHHHHHHHhccCccc
Confidence 568999999998 89999999999999999997554 455668999998744 34449999999999999999999999
Q ss_pred eEEEecccccccc---hHH----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCcee
Q 015773 163 TFIFSDFDYVGGA---FYK----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 235 (400)
Q Consensus 163 t~i~~~s~~~~~~---~~~----~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~ 235 (400)
+.+|.||+++.|. |+. .+.+|+|+++|++...+++ ....++|.|+||+|||| ||+.|++ +.
T Consensus 91 s~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAA--------DILLYks---Th 158 (347)
T KOG2713|consen 91 SSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAA--------DILLYKS---TH 158 (347)
T ss_pred ceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhh--------hHhhhcc---cc
Confidence 9999999998763 332 3678999999998887654 35689999999999999 7999998 47
Q ss_pred eccccCchhHHHHHHHHHhhhCC-------CCCeeee---cccccCCCCCCCcCCCCCCC--CeeeecCcHHHHHHHhhc
Q 015773 236 IPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINK 303 (400)
Q Consensus 236 vp~G~DQd~~~~l~rdla~r~~~-------~kp~~l~---~~~lp~L~G~~~KMSKS~~n--saI~L~D~~~~i~~KI~k 303 (400)
||||.||-||++|+|++|++||. +.|..+. +..+.+|..|.+|||||+|| +.|+|+|+|+.|.+||+|
T Consensus 159 VPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~k 238 (347)
T KOG2713|consen 159 VPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKK 238 (347)
T ss_pred ccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHH
Confidence 99999999999999999999984 4565443 67899999999999999987 799999999999999999
Q ss_pred ccccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015773 304 YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 383 (400)
Q Consensus 304 ~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~ 383 (400)
|.|+... ...+..++.|++.++.+++... ++.+++++.+.+++ +.++++|..+|++|++-|.|+|++++++..
T Consensus 239 -a~TD~~~--~vtYd~~~RpgvsNLlni~aaV--t~~s~eeV~~~~a~--~~~~~fK~~vaeAvie~L~PIr~~fee~~~ 311 (347)
T KOG2713|consen 239 -AQTDNTS--GVTYDPANRPGVSNLLNIYAAV--TGKSIEEVVEESAN--MSTADFKDNVAEAVIEHLAPIRTEFEELIN 311 (347)
T ss_pred -Hhccccc--ceeeCCccccchhHHHHHHHHH--cCCCHHHHHHHhcc--CCHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 9999543 3446778899998888877776 56788899987775 899999999999999999999999999986
Q ss_pred H--HHHHHHhcC
Q 015773 384 E--MVDAFMAVR 393 (400)
Q Consensus 384 ~--~~~~~~~~~ 393 (400)
+ +|++++..+
T Consensus 312 ~~~~l~kvl~~G 323 (347)
T KOG2713|consen 312 EPEYLDKVLEEG 323 (347)
T ss_pred CHHHHHHHHHHh
Confidence 4 899888653
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=4.5e-48 Score=389.47 Aligned_cols=281 Identities=26% Similarity=0.285 Sum_probs=233.5
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 136 (400)
..+.+||++..+++.+.+.+.+++ ++++|+||+|||++|||||+++++++ ++||++ |+.++++|||+|++++++
T Consensus 6 ~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l-~~lq~~-G~~~~iligd~ta~igdpsg 81 (377)
T TIGR00234 6 LLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKL-RDFQQA-GHEVIVLLGDATALIGDPSG 81 (377)
T ss_pred HHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHH-HHHHHC-CCcEEEEEeccchhhcCCCC
Confidence 567899999999998777776655 89999999999989999999999888 999996 777788899999998753
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccchHHHH-HHHHhhcCHHHHHHhhCCC----CCccc
Q 015773 137 -------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNM-VKVAKCVTYNKVVGIFGFT----GEDHI 204 (400)
Q Consensus 137 -------~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~-~~l~r~~t~~~~~~~~g~~----~~~~~ 204 (400)
++.+++++|+ ++++.++|+|+||+++.|+.||+|..+..|..+ .++++++|+++|+++.++. +++++
T Consensus 82 ~~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~ 160 (377)
T TIGR00234 82 KSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISL 160 (377)
T ss_pred hHHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCc
Confidence 5678888888 678889999999999999999999976545454 4599999999999987653 47999
Q ss_pred cccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCC
Q 015773 205 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 284 (400)
Q Consensus 205 g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~ 284 (400)
++|+||+|||| |++.+++| ++++|.||++|++.+|++|+|++...+..++.+++++++| .|||||.+
T Consensus 161 ~ef~YpllQa~--------D~~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg--~KmgKS~~ 227 (377)
T TIGR00234 161 SEFIYPLLQAY--------DFVYLNVD---LQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADG--EKMGKSGG 227 (377)
T ss_pred hhhhhHHHHHH--------HHHHHcCC---eeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCC--CCccCCCC
Confidence 99999999999 68888886 8999999999999999999999977778888899999985 89999988
Q ss_pred CCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCChHHHHHHH
Q 015773 285 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRL 363 (400)
Q Consensus 285 nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~~~~lK~~L 363 (400)
| +||+++++ |.+++++.. .|| +++.+|+++|+. +.+++++|.+ ..+ .+++.+|+.|
T Consensus 228 ~-~i~l~~~~---------~~~~i~~~d---------~~D-~~~~Ki~k~~t~~~~~ei~~l~~--~~~-~~~~~~q~~l 284 (377)
T TIGR00234 228 G-AVSLDEGK---------YDFYQFWIN---------TPD-EDVKKILKLFTFLGLEEIEALVE--LKG-PSPREVKENL 284 (377)
T ss_pred C-cccCCccH---------hhhhhhhcC---------CcH-HHHHHHHHHcCCCcHHHHHHHHH--hcc-cCHHHHHHHH
Confidence 7 89998854 455555543 233 344677777653 5678888865 333 6899999999
Q ss_pred HHHHHHHhhhHHHHHHH
Q 015773 364 AKVLTELVERHQVARAA 380 (400)
Q Consensus 364 a~~i~~~l~~~~~~~~~ 380 (400)
|.+|++++|+.....++
T Consensus 285 a~ei~~~vhg~~~~~~a 301 (377)
T TIGR00234 285 AKEITKYVHGEEAALAA 301 (377)
T ss_pred HHHHHHHhcCHHHHHHH
Confidence 99999999997765543
No 23
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-47 Score=381.49 Aligned_cols=299 Identities=25% Similarity=0.330 Sum_probs=250.2
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-C
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-L 137 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~ 137 (400)
..|+.||++....+.+.+.+.++.+ |+.+|+||||||+++||||+++++++ ++||++ |+.++++|||+|++++++ .
T Consensus 7 ~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~a-Gh~~ivLigd~ta~IgDpsG 83 (401)
T COG0162 7 LELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKL-RRFQDA-GHKPIVLIGDATAMIGDPSG 83 (401)
T ss_pred HHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHH-HHHHHC-CCeEEEEecccceecCCCCC
Confidence 5789999999999988888878775 99999999999999999999999999 999997 777788899999999876 5
Q ss_pred CHHHHHHHHH----HHHHHHH-HcCCCCC-ceEEEecccccccchHHHHHH-HHhhcCHHHHHHhhCC------CCCccc
Q 015773 138 SVEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF------TGEDHI 204 (400)
Q Consensus 138 ~~e~i~~~~~----~~~~~il-A~G~dp~-kt~i~~~s~~~~~~~~~~~~~-l~r~~t~~~~~~~~g~------~~~~~~ 204 (400)
..++++..+. +|++.+. ++|..++ ++.+++||+|..+.-|..+++ +++++|+++|+++..+ .+++++
T Consensus 84 k~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~ 163 (401)
T COG0162 84 KSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISF 163 (401)
T ss_pred CHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCch
Confidence 6666665554 5555554 4676666 999999999998765666554 8999999999998643 247999
Q ss_pred cccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCC
Q 015773 205 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 284 (400)
Q Consensus 205 g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~ 284 (400)
++|.||+|||| |++.++.| +..+|.||+.++.++||+++|+|..++.+++.|+|++++| +|||||.+
T Consensus 164 ~Ef~YpLmQay--------D~~~L~~d---lq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG--~KmgKs~~ 230 (401)
T COG0162 164 TEFNYPLLQAY--------DFVYLNKD---LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDG--KKMGKSEG 230 (401)
T ss_pred hhhhhHHHHHH--------HHHHHccc---hhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCC--CcccccCC
Confidence 99999999999 68889886 5568888888888889999999999999999999999998 59999999
Q ss_pred CCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCChHHHHHHH
Q 015773 285 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRL 363 (400)
Q Consensus 285 nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~~~~lK~~L 363 (400)
| ++|++. ++.++|.++|++.+++ |. .+..|+.+++. +.+++++|.+....+. +++++|+.|
T Consensus 231 ~-a~~~~s------~~~Sp~~~yq~~~~i~---------D~-~~~~~~~~~t~l~~~eI~~i~~~~~~~~-~~r~~k~~L 292 (401)
T COG0162 231 G-AVWLDS------EKTSPYDFYQYWMNIE---------DA-DVKRFLKLLTFLSLEEIEEIEKYVLKGP-EPREAKKLL 292 (401)
T ss_pred C-ceEccC------CCCCcHhhhhcHhcCc---------HH-HHHHHHHHhCcCChHHHHHHHHHhhcCC-ChHHHHHHH
Confidence 9 999998 8889999999998754 33 34678887743 5589999999888885 899999999
Q ss_pred HHHHHHHhhhHHHHHHHhhHHHHHHHHhcC
Q 015773 364 AKVLTELVERHQVARAAVTDEMVDAFMAVR 393 (400)
Q Consensus 364 a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (400)
|.+++..+||.....++... .+..+..+
T Consensus 293 A~e~~~~~hG~~~a~~a~~~--~~~~F~~g 320 (401)
T COG0162 293 AKEVTKLVHGEEAAEAAEEE--FEKLFSEG 320 (401)
T ss_pred HHHhhHhhcCHHHHHHHHHH--HHHHHhcC
Confidence 99999999999888776553 44444443
No 24
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.8e-42 Score=321.52 Aligned_cols=300 Identities=21% Similarity=0.243 Sum_probs=234.7
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-C
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-L 137 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~ 137 (400)
..|++|++=.. -..+.|.+.+++ +.+.+|+|+.||| .||+|.++|++++ ..|-++ ||.|.|++||+||++++. .
T Consensus 10 ~~lItrnlqE~-lgee~lk~iL~e-r~l~~YwGtaptG-rpHiay~vpm~ki-adflkA-GC~VtIl~AD~hA~LdNmka 84 (360)
T KOG2144|consen 10 YKLITRNLQEV-LGEEELKNILAE-RALKCYWGTAPTG-RPHIAYFVPMMKI-ADFLKA-GCEVTILFADLHAFLDNMKA 84 (360)
T ss_pred HHHHHHHHHHH-hCHHHHHHHHhc-cCceeeecCCCCC-CcceeeeeehhHH-HHHHhc-CCeEEEEehHHHHHHhcccc
Confidence 34555554211 122344444455 7789999999998 8999999999999 677675 999999999999999874 7
Q ss_pred CHHHHHHHHHHHHHHHHH----cCCCCCceEEEeccccccc-chHHHHHHHHhhcCHHHHHHh--hCCC--CCccccccc
Q 015773 138 SVEESQRLARENAKDIIA----CGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI--FGFT--GEDHIGKVS 208 (400)
Q Consensus 138 ~~e~i~~~~~~~~~~ilA----~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~r~~t~~~~~~~--~g~~--~~~~~g~~~ 208 (400)
.++.+...+.++-..|.| .+.+.++..+..-|++-.. .|-.++.++.+.+|-...+.. .+.+ +..+++.+.
T Consensus 85 p~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~ll 164 (360)
T KOG2144|consen 85 PDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSGLL 164 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhhhh
Confidence 788888877666555443 3555566655544544433 444567788888887766653 3333 567889999
Q ss_pred hhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCee
Q 015773 209 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 288 (400)
Q Consensus 209 YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI 288 (400)
||.|||+ |++.+..| ..++|.||+..+.++|++.+.+|+.||.+++++++|||++ |+|||||+|+|+|
T Consensus 165 YP~MQal--------De~~L~vD---~qfgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q-~~KMSsSd~~SkI 232 (360)
T KOG2144|consen 165 YPGMQAL--------DEFYLEVD---AQFGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQ-GEKMSSSDPLSKI 232 (360)
T ss_pred hhhHHHh--------hHHHHhhh---HHhcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccc-cCccccCCccccc
Confidence 9999999 56677876 4689999999999999999999999999999999999997 6999999999999
Q ss_pred eecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchH----HHHHhhccC-------------ChHHHHHHHHHHhc
Q 015773 289 YVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIP----VKYLSFFLE-------------DDAELEHIKKEYGA 351 (400)
Q Consensus 289 ~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~----~~~l~~f~~-------------~~~eleei~~~~~~ 351 (400)
+|.|+|++|.+||++ |||.+... .+|+....+ +.++..|.. +...+++++++|.+
T Consensus 233 dllD~~~~V~kKI~k-AfCePg~v-------e~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~ 304 (360)
T KOG2144|consen 233 DLLDEPADVNKKIKK-AFCEPGNV-------EGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEE 304 (360)
T ss_pred ccccCHHHHHHHHHH-hcCCCCCc-------CCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHh
Confidence 999999999999999 99998643 357654332 233333210 35789999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015773 352 GGMLTGEVKQRLAKVLTELVERHQVARAAVTD 383 (400)
Q Consensus 352 g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~ 383 (400)
|++||+++|+.|+..|+++|.++|+.++...+
T Consensus 305 ~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~~ 336 (360)
T KOG2144|consen 305 GELHPGDLKKGLEKALNELLQPIREEFSNWPE 336 (360)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999998887554
No 25
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-41 Score=328.60 Aligned_cols=288 Identities=17% Similarity=0.207 Sum_probs=220.8
Q ss_pred hHHHhcCcccccCCHH---HHHHHHH-hCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEE------ecC
Q 015773 59 HVFLRRGVFFAHRDLN---DILDAYE-KGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQ------LTD 128 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~---~ll~~~~-~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~------I~D 128 (400)
-.+..||+| ++.-.+ ...+.++ .|-|.++|+|||||++|||+||++++|.+ .|+|.+++.++.++ |||
T Consensus 34 ~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L-~hfqr~Gh~~ialIGgATa~vGD 111 (467)
T KOG2623|consen 34 TELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVL-IHFQRAGHRPIALIGGATASVGD 111 (467)
T ss_pred HHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHH-HHHHHcCCCceEEeccccccccC
Confidence 467789988 433322 2344444 45589999999999999999999999999 99999877777765 788
Q ss_pred cccc-cccC-CCHHHHHHHHHHHHHHHHH----------cCCCCCceEEEecccccccchHHHHHH-HHhhcCHHHHHHh
Q 015773 129 DEKC-MWKN-LSVEESQRLARENAKDIIA----------CGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGI 195 (400)
Q Consensus 129 ~~a~-~~~~-~~~e~i~~~~~~~~~~ilA----------~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~r~~t~~~~~~~ 195 (400)
|+.. +.|+ +..+.+++|++.+-..+.+ +|..-.+-+|++|++|.++.-+.+|+. +++++.+..|+++
T Consensus 112 PSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar 191 (467)
T KOG2623|consen 112 PSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLAR 191 (467)
T ss_pred CCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHH
Confidence 8844 3354 6677777777544433332 344445679999999998777777765 8899999888886
Q ss_pred h------CCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHH--HHHHHhhhCC--CCCeeee
Q 015773 196 F------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM--TRDVAPRIGY--HKPALIE 265 (400)
Q Consensus 196 ~------g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l--~rdla~r~~~--~kp~~l~ 265 (400)
. ...+++|++||+|++|||| |++++..+++|.+++|+. |||+++ +.|+++|+-. ..++.++
T Consensus 192 ~SV~~RLes~~GlSftEFtYQ~lQAY--------Dfy~L~~~~g~~~QlGGs-DQwGNitaG~dlI~ki~~~~~~vfGlT 262 (467)
T KOG2623|consen 192 DSVKSRLESPNGLSFTEFTYQLLQAY--------DFYHLYENYGCRFQLGGS-DQWGNITAGTDLIRKIMPIQAFVFGLT 262 (467)
T ss_pred HHHHHhhcCCCCCcHHHHHHHHHHHH--------hHHHHHHhcCeeEEeccc-ccccccchHHHHHHHhcccccceeeee
Confidence 4 3457999999999999999 677777788999986665 555555 5999999754 2334444
Q ss_pred cccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhcc-CChHHHHH
Q 015773 266 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-EDDAELEH 344 (400)
Q Consensus 266 ~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~-~~~~elee 344 (400)
.|++..-+ |.|++||.+| ||||+. .|+++|++||++.. -||.++ -++|+.|+ .+.+++++
T Consensus 263 ~PLlTsst--G~KlGKSaGn-AvWLdp------~~tspy~lYQfF~~---------~pDd~v-~k~LklfTfl~l~eI~~ 323 (467)
T KOG2623|consen 263 FPLLTSST--GAKLGKSAGN-AVWLDP------SKTSPYHLYQFFAS---------LPDDDV-EKFLKLFTFLPLEEIKQ 323 (467)
T ss_pred eeeEecCc--chhhccCCCc-eEEecC------ccCCcHHHHHHHHh---------CchhHH-HHHHHHHhcCCHHHHHH
Confidence 44444444 5899999999 999999 89999999999875 466555 46666664 38899999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHH
Q 015773 345 IKKEYGAGGMLTGEVKQRLAKVLTELVERHQVA 377 (400)
Q Consensus 345 i~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~ 377 (400)
|.+++.+. +..+..++.||++|++++|+...-
T Consensus 324 I~~~H~k~-P~~r~aQ~~LA~eVTr~VHG~egL 355 (467)
T KOG2623|consen 324 ILEEHRKE-PSQRIAQKLLAAEVTRMVHGKEGL 355 (467)
T ss_pred HHHHHhcC-hhhhhHHHHHHHHHHHHHcccchH
Confidence 99999976 788999999999999999997654
No 26
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.7e-35 Score=310.14 Aligned_cols=243 Identities=14% Similarity=0.168 Sum_probs=209.5
Q ss_pred HHHHhcCCCcEEEEecCcccccccC--CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc---chHHHHHHHHhh
Q 015773 112 RYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAKC 186 (400)
Q Consensus 112 ~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~---~~~~~~~~l~r~ 186 (400)
..|+++.||.++|+||||||+++++ .++++|++.++++++.|.|+|+|++ +.++..|+...+ .||..+++++|+
T Consensus 400 ~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~ 478 (682)
T PTZ00348 400 DFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARK 478 (682)
T ss_pred HHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHh
Confidence 3477888999999999999999886 8999999999999999999999998 877766676532 899999999999
Q ss_pred cCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeec
Q 015773 187 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 266 (400)
Q Consensus 187 ~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~ 266 (400)
+|++++++..| .+..+++++.||+||++ ||+.++.| +..+|.||+..++|+|+++++.. +|..+++
T Consensus 479 ~tl~r~~r~~g-~~~~~~s~~iYP~MQ~~--------Di~~L~~d---i~~gG~DQRki~mlAre~~~~~~--~~~~~~~ 544 (682)
T PTZ00348 479 NLLSHVEELYG-GELRNAGQVIAALMRVA--------TALMLSAS---HVISTSLDGGINEFAREYTKGRI--ECIQALE 544 (682)
T ss_pred ccHHHHHHHhc-CCcccHHHHHHHHHHHH--------HHHhcCCC---eeecChhHHHHHHHHHHhccccc--cchhhcC
Confidence 99999999987 56679999999999999 68888887 57899999999999999999654 3445678
Q ss_pred ccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHH-hhc---c-C----
Q 015773 267 SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL-SFF---L-E---- 337 (400)
Q Consensus 267 ~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l-~~f---~-~---- 337 (400)
.++|+|.++..+|++|.++|+|||+|++++|++||++ |||.... .+||..+.+ +|+ ..+ . +
T Consensus 545 ~~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~k-A~Cpp~~--------~~Npvl~~~-~y~~~~~~~~~i~R~e~ 614 (682)
T PTZ00348 545 GRVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNE--------EANPVISVA-QHLLAQQGALSIERGEA 614 (682)
T ss_pred CCCccccccccccCCCCCCCeeeecCCHHHHHHHHHh-CCCCCCC--------CCCcHHHHH-HHHhcCCCeEEEecccc
Confidence 8999999777889999889999999999999999999 9999742 258876553 333 111 1 0
Q ss_pred -----ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHH
Q 015773 338 -----DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARA 379 (400)
Q Consensus 338 -----~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~ 379 (400)
..+++++++++|.+|++||.+||.++|+.|+++++|+|+.++
T Consensus 615 ~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 615 NGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred cCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 246799999999999999999999999999999999999997
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.40 E-value=1.5e-12 Score=114.35 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=54.5
Q ss_pred hhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCC-CCeeeecccccCCCCCCCcCCCCC
Q 015773 209 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 283 (400)
Q Consensus 209 YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSKS~ 283 (400)
|++.|+|| ++.+.....+++++|.||.+|++..++++++++.. +|..++..+|++..| +|||||.
T Consensus 78 y~~~~~a~--------~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAAD--------FLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHHH--------HHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 99999994 55555444568899999999999999999999764 688888899988875 7999984
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.32 E-value=1.4e-11 Score=117.25 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=118.4
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 165 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~-------i 165 (400)
.||| .|||||+..++..|.+.+.. |..+++-|-|.- ...+. ..+...+.+++..+|+++++.. +
T Consensus 9 sPtG-~LHlG~~~~al~n~l~ar~~-~G~~ilRieDtd----~~r~~---~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTG-FLHIGGARTALFNYLFARKH-GGKFILRIEDTD----QERSV---PEAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHc-CCeEEEEECcCC----CCCCc---hHHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 4788 79999999999997777775 445566567721 11222 2344466777788899998742 7
Q ss_pred EecccccccchHHHHH-HHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchh
Q 015773 166 FSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 244 (400)
Q Consensus 166 ~~~s~~~~~~~~~~~~-~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~ 244 (400)
|.||+-. ..|..+. ++. + .| -|..+|++.+++| |. ..+. +.|+.|.|+..
T Consensus 80 ~~QS~r~--~~y~~~~~~L~---------~-~g------dg~ptY~~a~~vD-------D~-~~~i---thViRG~D~~~ 130 (239)
T cd00808 80 YRQSERL--EIYRKYAEKLL---------E-KG------DGFPTYHLANVVD-------DH-LMGI---THVIRGEEHLS 130 (239)
T ss_pred EeeeCCH--HHHHHHHHHHH---------H-cC------CCCcccccHHHHh-------HH-hcCC---CEEEEChhhhh
Confidence 8888643 3343332 221 1 11 3788999999996 54 4444 47899999999
Q ss_pred HHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeec----CcHHHHHHHh
Q 015773 245 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKI 301 (400)
Q Consensus 245 ~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~----D~~~~i~~KI 301 (400)
+....+.+++.+|.+.|...+.+++++.+| .||||+.++.+|--. -+|+.|.+-+
T Consensus 131 ~t~~q~~l~~aLg~~~p~~~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l 189 (239)
T cd00808 131 STPKQILLYEALGWEPPKFAHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYL 189 (239)
T ss_pred ChHHHHHHHHHcCCCCCceEeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHH
Confidence 999999999999999998888888888886 799999887444221 2455555443
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.05 E-value=7.3e-09 Score=109.03 Aligned_cols=208 Identities=19% Similarity=0.257 Sum_probs=117.8
Q ss_pred HHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcE-EEEecCccccccc---CCCH-HH----
Q 015773 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPL-VIQLTDDEKCMWK---NLSV-EE---- 141 (400)
Q Consensus 74 ~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v-~I~I~D~~a~~~~---~~~~-e~---- 141 (400)
++|++...++.++.+=||+.||| .+||||+-..+.. .++|... |..+ +|..+|++.-+.+ .++. +.
T Consensus 13 ~~~~~r~~~~~~~~~~~g~~psG-~~HiG~~~e~~~~d~v~r~lr~~-G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~ 90 (510)
T PRK00750 13 EKIIKRLGKKPPVVVETGIGPSG-LPHIGNFREVARTDMVRRALRDL-GIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEY 90 (510)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCC-CcccccccchhhHHHHHHHHHHc-CCcEEEEEEEecCCcccccCCCCCchHHHHHh
Confidence 44555444444589999999998 8999997665443 3556665 5555 4446888854311 1111 11
Q ss_pred --------------HHHHHHHH----HHHHHHcCCCCCceEEEecccccccchHHHHHH--HHhhcCHHHHHHhh-CCC-
Q 015773 142 --------------SQRLAREN----AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GFT- 199 (400)
Q Consensus 142 --------------i~~~~~~~----~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~r~~t~~~~~~~~-g~~- 199 (400)
-..++..+ .+.+-.+|++.+ ++++++...+-.|...++ |.++=.+.+++..+ |..
T Consensus 91 ~G~pl~~~p~p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~ 167 (510)
T PRK00750 91 LGKPLTEIPDPFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEER 167 (510)
T ss_pred cCcccccCCCCCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 13344333 334445898754 666666554433333322 44444444444432 210
Q ss_pred -C--------Ccc---------------ccccchh----------hhhcCC--CCCCCcc-cccccCCCCceeeccccCc
Q 015773 200 -G--------EDH---------------IGKVSFP----------PVQAVP--SFPSSFP-HLFSGKDHLRCLIPCAIDQ 242 (400)
Q Consensus 200 -~--------~~~---------------~g~~~YP----------llQaad--~~~~~~~-dil~~~~~~~~~vp~G~DQ 242 (400)
+ ..+ -|.+.|- +..+.- -|...+| -...++. .+.|.|.||
T Consensus 168 ~~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~V---d~e~~GkDh 244 (510)
T PRK00750 168 QATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGV---DFEPFGKDH 244 (510)
T ss_pred CCCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCC---CEEeeCccc
Confidence 0 001 1223331 111100 0000000 0111333 367999999
Q ss_pred hh-HHHHHHHHHh-hhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 243 DP-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 243 d~-~~~l~rdla~-r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
.. ...+++.+++ .+|.+.|..++..++..-+| +|||||.+| .|.+.|
T Consensus 245 ~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 245 ASASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSKGN-VITIED 293 (510)
T ss_pred CcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccCCC-ccCHHH
Confidence 99 9999999999 89998898877777776654 899999988 888766
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.89 E-value=2.3e-08 Score=94.69 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=104.8
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
.||| .|||||+..++..|.+-+. .|..+++-|=|.-. ..+. ..+...+..++..+|++.+.- ++.||+-.
T Consensus 9 sPtG-~lHlG~~r~al~n~l~Ar~-~~G~~iLRieDtD~----~R~~---~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTG-YLHIGHARTALFNFAFARK-YGGKFILRIEDTDP----ERSR---PEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHH-cCCeEEEEeCcCCC----CCCC---hHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 4788 7999999999998555555 46666666655221 1111 233346677777899988753 66777654
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHH
Q 015773 173 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 252 (400)
Q Consensus 173 ~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdl 252 (400)
..|+.-+-+|.+. + |..+|-+--+.| |.+..= +.|..|.|+...-..-+.+
T Consensus 79 -~~y~~~~~~L~~~--------------g---g~p~Y~la~vvD-------D~~~gI----ThViRG~D~l~st~~q~~l 129 (230)
T cd00418 79 -DLYRAYAEELIKK--------------G---GYPLYNFVHPVD-------DALMGI----THVLRGEDHLDNTPIQDWL 129 (230)
T ss_pred -HHHHHHHHHHHHc--------------C---CCcccccccccc-------ccccCC----CEEEECHhhhhchHHHHHH
Confidence 2333322222211 1 556666666665 654322 5789999988888888999
Q ss_pred HhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCe
Q 015773 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSA 287 (400)
Q Consensus 253 a~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsa 287 (400)
++.+|.++|...|.+++...+| +||||+.++.+
T Consensus 130 ~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~~ 162 (230)
T cd00418 130 YEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNTT 162 (230)
T ss_pred HHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCcC
Confidence 9999999999999999998886 89999987633
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.82 E-value=8.2e-08 Score=96.47 Aligned_cols=208 Identities=20% Similarity=0.313 Sum_probs=114.1
Q ss_pred HHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcE-EEEecCccccccc-------------C
Q 015773 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPL-VIQLTDDEKCMWK-------------N 136 (400)
Q Consensus 74 ~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v-~I~I~D~~a~~~~-------------~ 136 (400)
++|++....+.++.+=||+-||| .+||||+...+.. .+++... |..+ +|..+|.+.-+.+ .
T Consensus 9 ~~~~~~~~~~~~~~v~tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~-G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G 86 (353)
T cd00674 9 EKIIEERKGKEKYVVASGISPSG-HIHIGNFREVITADLVARALRDL-GFEVRLIYSWDDYDRLRKVPPNVPESYEQYIG 86 (353)
T ss_pred HHHHHhccCCCeEEEecCCCCCC-CcccCccHHHHHHHHHHHHHHHc-CCCEEEEEEEcCCCcccccccchhhHHHHhcC
Confidence 34444333345788899999998 8999997765444 3445554 5554 4457888832211 0
Q ss_pred C-----------CHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccchHHH-HHH-HHhhcCHHHHHHhh-CC--CC
Q 015773 137 L-----------SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN-MVK-VAKCVTYNKVVGIF-GF--TG 200 (400)
Q Consensus 137 ~-----------~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~-~~~-l~r~~t~~~~~~~~-g~--~~ 200 (400)
. ..+-+.++.....+.+-.+|++.+ ++++++...+-.|.. +.. |.+.-.+.+++..+ |. .+
T Consensus 87 ~pi~~ip~p~g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~ 163 (353)
T cd00674 87 MPLSSVPDPFGCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQE 163 (353)
T ss_pred ccchhchhhcCCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCC
Confidence 1 112233333444455556899764 666666554433333 222 44554555554432 11 00
Q ss_pred --------Ccccc--------------ccchhhhhc----CCC--------CCCCcc-cccccCCCCceeeccccCchhH
Q 015773 201 --------EDHIG--------------KVSFPPVQA----VPS--------FPSSFP-HLFSGKDHLRCLIPCAIDQDPY 245 (400)
Q Consensus 201 --------~~~~g--------------~~~YPllQa----ad~--------~~~~~~-dil~~~~~~~~~vp~G~DQd~~ 245 (400)
.-+.| .+.|-+=-+ +|. |...+| ....++. ..-|.|.||..+
T Consensus 164 ~~~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~V---d~E~~GkDh~~~ 240 (353)
T cd00674 164 TWYPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGV---DFEPFGKDHASA 240 (353)
T ss_pred CceeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCC---CEEeeCcccccc
Confidence 00112 233321000 000 000000 1112233 256899999888
Q ss_pred ---HHHHHHHHh-hhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 246 ---FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 246 ---~~l~rdla~-r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...+.+++ .+|.+.|..+..-++- +.| +.|||||.+| .|.+.|
T Consensus 241 ggs~~~~~~i~~~ilg~~~P~~~~ye~V~-l~g-g~KMSKSkGn-vI~~~d 288 (353)
T cd00674 241 GGSYDTGKEIAREIFGGEPPVPVMYEFIG-LKG-GGKMSSSKGN-VITPSD 288 (353)
T ss_pred ccHHHHHHHHHHHHhCCCCCeEEEeeeEE-eCC-CCccCCCCCC-cCCHHH
Confidence 999999999 8998888766555553 554 3699999988 888776
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.36 E-value=4e-06 Score=88.34 Aligned_cols=199 Identities=16% Similarity=0.231 Sum_probs=105.6
Q ss_pred CceeEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEecCccccc---------------ccCCC-----HH
Q 015773 84 EKFYLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQLTDDEKCM---------------WKNLS-----VE 140 (400)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I~D~~a~~---------------~~~~~-----~e 140 (400)
+++.+=||+.||| .+||||+...+.. .+++...+.-..+|..+|++.-+ ..+++ ..
T Consensus 18 ~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 4799999999998 8999998776554 34565554333455578877222 11110 01
Q ss_pred HHHHHHHHH----HHHHHHcCCCCCceEEEecccccccchHHHHHH--HHhhcCHHHHHHhh-CC--CC--------Ccc
Q 015773 141 ESQRLAREN----AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GF--TG--------EDH 203 (400)
Q Consensus 141 ~i~~~~~~~----~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~r~~t~~~~~~~~-g~--~~--------~~~ 203 (400)
....++..+ .+.+-.+|++ ..++++++....-.|...++ |.+.-.+.+++..+ |. .+ .-+
T Consensus 97 ~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~ 173 (515)
T TIGR00467 97 CKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCEN 173 (515)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCC
Confidence 113333333 3344457885 46778887765434444433 44444454544432 21 11 123
Q ss_pred ccccchhhhhcCCCCC-CCc---------ccccc-----------------cCCCCceeeccccCchhHH---HHHHHHH
Q 015773 204 IGKVSFPPVQAVPSFP-SSF---------PHLFS-----------------GKDHLRCLIPCAIDQDPYF---RMTRDVA 253 (400)
Q Consensus 204 ~g~~~YPllQaad~~~-~~~---------~dil~-----------------~~~~~~~~vp~G~DQd~~~---~l~rdla 253 (400)
.|.+..|+. .+|.-. -.| -++.. ++. +.-|.|.|+..-+ ....++|
T Consensus 174 cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lgV---~~Ep~GkDH~~~ggsy~~~~~ia 249 (515)
T TIGR00467 174 CGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEKV---TFEPAGKDHAAAGGSYDTGVNIA 249 (515)
T ss_pred cCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhCc---ccccCCCCccCccCCchhHHHHH
Confidence 466655555 333110 000 01110 111 2347788865533 3445666
Q ss_pred h-hhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 254 P-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 254 ~-r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+ -+|...|..+..-++- |.|.|+|||||.+| .|.+.|
T Consensus 250 ~~~l~~~~P~~~~ye~v~-L~~~g~KMSKS~Gn-~itl~d 287 (515)
T TIGR00467 250 KEIFQYSPPVTVQYEWIS-LKGKGGKMSSSKGD-VISVKD 287 (515)
T ss_pred HHHhCCCCCcCcEEEEEE-EcCCCccccCCCCC-CccHHH
Confidence 5 4766666543322222 55656899999998 777654
No 33
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.93 E-value=5.8e-05 Score=75.75 Aligned_cols=204 Identities=20% Similarity=0.277 Sum_probs=83.9
Q ss_pred CCceeEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEecCcc----------------cccccCCC-----
Q 015773 83 GEKFYLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQLTDDE----------------KCMWKNLS----- 138 (400)
Q Consensus 83 g~~~~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I~D~~----------------a~~~~~~~----- 138 (400)
+.+..+=||+.||| .+||||+--++.. .+-|++.+.-.-+|..+|+- +++..+++
T Consensus 22 ~~~~v~~sG~sPSG-~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 22 KEPYVFASGISPSG-LPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDP 100 (360)
T ss_dssp -SEEEEEEEE--SS----HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-T
T ss_pred CccEEEecCCCCCC-CcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCC
Confidence 46889999999998 8999997655444 24577764433344456643 22222111
Q ss_pred HHHHHHHHHHHHHH----HHHcCCCCCceEEEecccccccchHHHHHH--HHhhcCHHHHHHhh-CC--C----------
Q 015773 139 VEESQRLARENAKD----IIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GF--T---------- 199 (400)
Q Consensus 139 ~e~i~~~~~~~~~~----ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~r~~t~~~~~~~~-g~--~---------- 199 (400)
...-..++..+.+. +-.+|+++ .++++++....-.|...++ |.+.-.+.+++..+ |. .
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~~~~y~Pf~piC 177 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRERPETYSPFLPIC 177 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT--TT--SEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCCCCCeeeeeeec
Confidence 11122334444433 33479864 6778877775444444332 44444454444432 10 0
Q ss_pred ------C-----Cc--cccccchhhhhcCCCCCCCccccc-----------------ccCCCCceeeccccCchh---HH
Q 015773 200 ------G-----ED--HIGKVSFPPVQAVPSFPSSFPHLF-----------------SGKDHLRCLIPCAIDQDP---YF 246 (400)
Q Consensus 200 ------~-----~~--~~g~~~YPllQaad~~~~~~~dil-----------------~~~~~~~~~vp~G~DQd~---~~ 246 (400)
+ +. .-+.+.|-+--.- +.---++. .++. +.-|.|.|+-. -.
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG---~~g~~~i~~g~gKL~WkvDW~mRW~~lgV---dfEp~GKDH~~~GGS~ 251 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECG---HEGEVDITGGNGKLQWKVDWPMRWAALGV---DFEPFGKDHASPGGSY 251 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS------EEETTTT-EEE-HHHHHHHHHHHTT----SEEEEEHHHHCTTSHH
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCC---CEEEEecCCCcccccCCCcChhhhhhcCc---eeccCCCccCCCCCCh
Confidence 0 00 1234444330000 00000111 1222 25688888777 78
Q ss_pred HHHHHHHhh-hCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC-----cHHHHHH
Q 015773 247 RMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKN 299 (400)
Q Consensus 247 ~l~rdla~r-~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D-----~~~~i~~ 299 (400)
..+.+||++ ||.+.|..+.--++ ++.| ++|||||.+| .|-+.| +|+.++=
T Consensus 252 d~~~~I~~~i~g~~pP~~~~YE~~-~~~g-~~kmSsSkG~-~~t~~e~L~~~~PE~lr~ 307 (360)
T PF01921_consen 252 DTSKRIAREILGYEPPVPFPYEFF-LDKG-GGKMSSSKGN-GITPEEWLEYAPPESLRY 307 (360)
T ss_dssp HHHHHHHHHCC-----EEEEE--E-EES----------------HHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHhCCCCCCCCCeeEE-EeCC-CcccccCCCC-ccCHHHHHHhcCHHHHHH
Confidence 888999955 78877876543222 3444 3699999999 776665 5555553
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.85 E-value=0.0011 Score=69.38 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=50.1
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC------cHHHHHHHhh
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIN 302 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~ 302 (400)
.|..|.||..+...-..+.+.+|.+.|...|.+++..++| +||||..+ ++.|.+ .|+.+.+-+.
T Consensus 200 hvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~ 269 (470)
T TIGR00464 200 HVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRDG--ATSIMQFKEQGYLPEALINYLA 269 (470)
T ss_pred EEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccCC--CccHHHHHHCCCCHHHHHHHHH
Confidence 4559999999988889999999998898888888888886 79999966 555543 4666655443
No 35
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.79 E-value=0.00023 Score=68.04 Aligned_cols=163 Identities=17% Similarity=0.226 Sum_probs=96.8
Q ss_pred eecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCC--CHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 015773 90 TGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNL--SVEESQRLARENAKDIIACGFDVTKTFIFS 167 (400)
Q Consensus 90 tG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~--~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~ 167 (400)
+|-.||| .|||||+..++..+.+-+ .++..+++-|-|... +. ..++. ...+.+++..+|++++ .++.
T Consensus 6 faPsPtG-~lHiG~~rtal~~~l~Ar-~~~G~~ilRieDtD~----~r~~~~~~~---~~~i~~dL~wLGl~~d--~~~~ 74 (240)
T cd09287 6 FAPNPNG-PLHLGHARAAILNGEYAK-MYGGKFILRFDDTDP----RTKRPDPEA---YDMIPEDLEWLGVKWD--EVVI 74 (240)
T ss_pred CCCCCCC-CccHHHHHHHHHHHHHHH-HcCCEEEEeeCcCCC----CcccchHHH---HHHHHHHHHHcCCCCC--Cccc
Confidence 4567888 799999999999854444 467888887877431 22 22222 2346778888999987 4677
Q ss_pred cccccccchHHHHH-HH-HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhH
Q 015773 168 DFDYVGGAFYKNMV-KV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPY 245 (400)
Q Consensus 168 ~s~~~~~~~~~~~~-~l-~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~ 245 (400)
||+-.+ .|..++ +| .+-.-+- ... ..+.- ..||..|-|-+ ..|.+.. - +.|..|.|-...
T Consensus 75 qS~r~~--~y~~~~~~Li~~G~aY~--~~~---~~~~~---~i~ptY~la~v----VDD~~~g-I---ThViRg~d~~~~ 136 (240)
T cd09287 75 ASDRIE--LYYEYARKLIEMGGAYV--HPR---TGSKY---RVWPTLNFAVA----VDDHLLG-V---THVLRGKDHIDN 136 (240)
T ss_pred hhccHH--HHHHHHHHHHHcCCccc--Ccc---cCCcE---EEEEcccccee----eeccccC-C---CeEEechhhhhC
Confidence 887642 232222 22 1111111 000 01111 23455554421 1143322 1 468899886665
Q ss_pred HHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCC
Q 015773 246 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 284 (400)
Q Consensus 246 ~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~ 284 (400)
-..-+-+.+.+|.+.|...|.+++. .. |+||||...
T Consensus 137 t~~q~~l~~~Lg~~~P~~~H~pll~-~~--~~kLSKR~~ 172 (240)
T cd09287 137 TEKQRYIYEYFGWEYPETIHWGRLK-IE--GGKLSTSKI 172 (240)
T ss_pred CHHHHHHHHHcCCCCCcEEeeeeec-CC--CCeeccccc
Confidence 5555778888999999888887774 23 489999964
No 36
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.69 E-value=0.0049 Score=64.94 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=76.3
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeee----cCcHHHHHHHhhcccccCCc
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV----TDSAKAIKNKINKYAFSGGQ 310 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L----~D~~~~i~~KI~k~A~t~~~ 310 (400)
.|..|.||..+.-.-+-+.+.+|...|...|.+++.+++| +||||..+...|-- -=.|+.|.+-+...-.+.+
T Consensus 199 hVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~plv~~~~g--~KLSKR~g~~~i~~~r~~G~~Peai~n~la~LG~s~~- 275 (513)
T PRK14895 199 HIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPLIHGADG--AKLSKRHGALGIEAYKDMGYLPESLCNYLLRLGWSHG- 275 (513)
T ss_pred EEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEeEEcCCC--CccccccCchhHHHHHHCCCCHHHHHHHHHHhCCCCC-
Confidence 4558999888887778899999998899899999888886 89999976533310 1156666665543222211
Q ss_pred chhHhhhhcCCCcccchHHHHHhhcc----------CChHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 015773 311 ESVELHRKLGANLEVDIPVKYLSFFL----------EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLT 368 (400)
Q Consensus 311 ~t~e~~~~~g~~p~v~v~~~~l~~f~----------~~~~eleei~~~~~~g~~~~~~lK~~La~~i~ 368 (400)
+.++...-++...|. -|.+.+..+-..|-.. +...++...+...+.
T Consensus 276 -----------~~e~~~~~el~~~F~~~~v~~s~~~FD~~KL~wlN~~yi~~-l~~~el~~~~~~~l~ 331 (513)
T PRK14895 276 -----------DDEIISMTQAIDWFNLDSLGKSPSKLDFAKMNSLNAHYLRM-LDNDSLTSKTVEILE 331 (513)
T ss_pred -----------CcCCCCHHHHHhhCCHHhCcCCcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Confidence 111222223333331 1678888888888763 666666666555544
No 37
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.61 E-value=0.00094 Score=65.87 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=47.2
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
-||| .|||||+..++..|.+-+.. |..+++-|-|.-. .. ....+...+++++..+|++.+.. ++.||+-.
T Consensus 13 SPTG-~LHlG~~rtAL~n~l~Ar~~-~G~~iLRiEDtD~----~R---~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 13 SPSG-PLHFGSLVAALGSWLDARAH-GGRWLLRIEDIDP----PR---EVPGAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHc-CCEEEEEECcCCC----Cc---cchHHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 3667 79999999999986666654 6677777766321 11 12334456778888899998754 45577654
No 38
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.0013 Score=68.38 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=63.4
Q ss_pred CceeEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEecCccccccc---CCC-HHHH--------------
Q 015773 84 EKFYLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQLTDDEKCMWK---NLS-VEES-------------- 142 (400)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I~D~~a~~~~---~~~-~e~i-------------- 142 (400)
.+..+=||+.||| .+||||+-=.+.. .+-|.+.++-.-+|.++|+..-+.+ +++ .+..
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 5688999999998 8999996544333 2446665443335557888754432 233 2332
Q ss_pred ----HHHHHHHHHHHH----HcCCCCCceEEEecccccccchHHHHHH--HHhhcCHHHHHH
Q 015773 143 ----QRLARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVG 194 (400)
Q Consensus 143 ----~~~~~~~~~~il----A~G~dp~kt~i~~~s~~~~~~~~~~~~~--l~r~~t~~~~~~ 194 (400)
..++..+.+.+. -+|+++ .++++++....-.|..+++ |.+.--+.+++.
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~ 156 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELYKSGLYDEAIRIALERRDEIMEILN 156 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhhhcccHHHHHHHHHhhHHHHHHHHH
Confidence 334444554444 368864 6788877766555555554 344444444444
No 39
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.52 E-value=0.0049 Score=64.73 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=49.6
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC------cHHHHHHHhh
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIN 302 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~ 302 (400)
+.|..|.||..+.-.-+.+.+.+|...|...|.+++..++| +||||-.+ ++.+.+ .|+.+.+=+.
T Consensus 209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~g--~~~l~~l~~~G~~p~Ai~n~l~ 279 (476)
T PRK01406 209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRHG--ATSVEQYRDMGYLPEALLNYLA 279 (476)
T ss_pred CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcCC--ccCHHHHHHCCCCHHHHHHHHH
Confidence 34569999999888888999999998898888888878876 89999966 555543 4555554443
No 40
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.43 E-value=0.00096 Score=63.62 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=87.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
.||| .|||||+..++..+.+-+. .|..+++-|=|.-. .. ........+.+++..+|++.+ .++.||+-.
T Consensus 9 sPtG-~lHlG~~~~al~~~l~Ar~-~~G~~iLRieDtD~----~R---~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~ 77 (238)
T cd00807 9 EPNG-YLHIGHAKAILLNFGYAKK-YGGRCNLRFDDTNP----EK---EEEEYVDSIKEDVKWLGIKPY--KVTYASDYF 77 (238)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEecCCCC----cc---cchHHHHHHHHHHHHcCCCCC--CceecccCH
Confidence 4778 7999999999998444444 46666666544211 11 122333466677778999988 467788754
Q ss_pred ccchHHHHH-HHH-hhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHH
Q 015773 173 GGAFYKNMV-KVA-KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 250 (400)
Q Consensus 173 ~~~~~~~~~-~l~-r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~r 250 (400)
..|..++ +|- +-.-+-. . ..+. .-..||..|-|-. ..|.+..= +.|..|.|....-..-.
T Consensus 78 --~~Y~~~~~~L~~~g~aY~~--~----~~~~--~~~i~ptY~lA~v----VDD~~~gI----ThVvRG~D~l~~t~~Q~ 139 (238)
T cd00807 78 --DQLYEYAEQLIKKGKAYVH--H----RTGD--KWCIYPTYDFAHP----IVDSIEGI----THSLCTLEFEDRRPSYY 139 (238)
T ss_pred --HHHHHHHHHHHHcCCeecC--C----CCCC--CEEEEeccccceE----eeccccCC----CeEEechhhhcCCHHHH
Confidence 2333322 221 1111100 0 0011 1112444444311 11543322 46788988555444446
Q ss_pred HHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCC
Q 015773 251 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 285 (400)
Q Consensus 251 dla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~n 285 (400)
-+.+.+|.+.|..+.-..+ ..+ |.|+||....
T Consensus 140 ~l~~aLg~~~P~~~~~~hl-n~~--g~kLSKR~~~ 171 (238)
T cd00807 140 WLCDALRLYRPHQWEFSRL-NLT--YTVMSKRKLL 171 (238)
T ss_pred HHHHHcCCCCCceeEEEEE-CCC--CCCccCcCch
Confidence 6778899988964421122 455 4899999653
No 41
>PLN02627 glutamyl-tRNA synthetase
Probab=97.41 E-value=0.013 Score=61.92 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=43.3
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC------cHHHHHHHhh
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIN 302 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~ 302 (400)
+.|.-|.|.-..--.-.-|.+-||.+.|...|.++|.+-+| +||||.++. +.+.+ .|+.|.+=+.
T Consensus 251 THViRG~D~l~nTpkQi~ly~aLg~~~P~f~Hlpli~~~~g--~KLSKR~~~--~~v~~~r~~G~~PeAi~nyla 321 (535)
T PLN02627 251 THVIRAEEHLPNTLRQALIYKALGFPMPRFAHVSLILAPDR--SKLSKRHGA--TSVGQFREMGYLPDAMVNYLA 321 (535)
T ss_pred cEEEechhhhcChHHHHHHHHHcCCCCCeEEEccceeCCCC--CccccccCC--ccHHHHHHCCCCHHHHHHHHH
Confidence 34566666444333335566779999999899998888876 799999754 33332 6666665553
No 42
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.40 E-value=0.0029 Score=67.47 Aligned_cols=180 Identities=14% Similarity=0.179 Sum_probs=103.2
Q ss_pred CceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015773 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 163 (400)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 163 (400)
.++....+=.||| .|||||+..++..+.+- +.+|..+++-|-|.-..+.| ....+...+..++..+|++++.
T Consensus 100 g~V~tRFaPsPtG-~LHIGharaalln~~~A-r~~~G~~iLRidDTDpk~~R-----~~~e~~~~I~edL~wLGl~wD~- 171 (567)
T PRK04156 100 GKVVMRFAPNPSG-PLHLGHARAAILNDEYA-KMYGGKFILRFEDTDPRTKR-----PDPEAYDMILEDLKWLGVKWDE- 171 (567)
T ss_pred CeEEEEeCCCCCC-CccHHHHHHHHHHHHHH-HHcCCEEEEeEccCCCCccc-----chHHHHHHHHHHHHHcCCCCCC-
Confidence 3577787888888 79999999999884444 44677777777664321111 1222334666777788999874
Q ss_pred EEEecccccccchHHHHHHH---------------------------HhhcCHHHHHHhh-----CC----------CC-
Q 015773 164 FIFSDFDYVGGAFYKNMVKV---------------------------AKCVTYNKVVGIF-----GF----------TG- 200 (400)
Q Consensus 164 ~i~~~s~~~~~~~~~~~~~l---------------------------~r~~t~~~~~~~~-----g~----------~~- 200 (400)
++.||+.+. .|+.-+-+| +|..+..+.+..+ |. .-
T Consensus 172 -~~~qSdr~~-~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d 249 (567)
T PRK04156 172 -VVIQSDRLE-IYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTD 249 (567)
T ss_pred -ccCcccCHH-HHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECc
Confidence 678887763 222211111 1111221111100 00 00
Q ss_pred ----Cccc------------------cccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCC
Q 015773 201 ----EDHI------------------GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY 258 (400)
Q Consensus 201 ----~~~~------------------g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~ 258 (400)
..++ +-..||.++-|.+ +.|.+ .+- ++|.+|.|...+-..-.-+.+.||.
T Consensus 250 ~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~----VDD~l-~GI---THViRg~d~~~~t~~Q~~l~~~Lg~ 321 (567)
T PRK04156 250 LEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVA----VDDHL-LGV---THVLRGKDHIDNTEKQRYIYDYFGW 321 (567)
T ss_pred ccCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCce----eeecC-CCC---CeEEcccccccChHHHHHHHHHcCC
Confidence 0000 0113555554422 22322 222 5788898876665556778888999
Q ss_pred CCCeeeecccccCCCCCCCcCCCCCC
Q 015773 259 HKPALIESSFFPALQGETGKMSASDP 284 (400)
Q Consensus 259 ~kp~~l~~~~lp~L~G~~~KMSKS~~ 284 (400)
+.|...|.++|- ++| .|||||..
T Consensus 322 ~~P~~~H~~~L~-~~g--~kLSKR~~ 344 (567)
T PRK04156 322 EYPETIHYGRLK-IEG--FVLSTSKI 344 (567)
T ss_pred CCceEEEcceec-CCC--ceeecccc
Confidence 899999988875 554 79999964
No 43
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.39 E-value=0.0032 Score=61.33 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
-||| .|||||+..++..|.+-+. .|..+++-|=|.-. .... ......+..++.-+|++.+.. ++.||+-.
T Consensus 8 SPtG-~lHiG~~rtAL~n~l~Ar~-~gG~~iLRiEDtD~----~R~~---~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~ 77 (272)
T TIGR03838 8 SPSG-PLHFGSLVAALGSYLDARA-HGGRWLVRIEDLDP----PREV---PGAADDILRTLEAYGLHWDGE-VVYQSQRH 77 (272)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEeCcCCC----CCCC---hHHHHHHHHHHHHcCCCCCCC-eeeeeCCH
Confidence 4788 7999999999998655555 46677776655221 1121 123335566667789998754 46777765
No 44
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.38 E-value=0.00061 Score=72.04 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=43.1
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCe---eeecccccCCCCCCCcCCCCCCCCeeeecCcHHH
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 296 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~---~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~ 296 (400)
++--+|.||..|+.-...+++.+|...+. .+|..+-.-+.+.|+|||||.|| +|++.|=-++
T Consensus 275 ~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn-~i~l~dll~~ 339 (507)
T PRK01611 275 VIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN-VVTLDDLLDE 339 (507)
T ss_pred EEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc-eeEHHHHHHH
Confidence 34479999999999999999999976332 23322211122235899999999 9998873333
No 45
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.33 E-value=0.0018 Score=60.87 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=44.8
Q ss_pred CCceeEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEe-cCcc--cccc---c-CCCHHH-HHHHHHHHHH
Q 015773 83 GEKFYLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQL-TDDE--KCMW---K-NLSVEE-SQRLARENAK 151 (400)
Q Consensus 83 g~~~~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I-~D~~--a~~~---~-~~~~e~-i~~~~~~~~~ 151 (400)
++.-...||-=|-+ .+||||+-+.+.. .+|+. ..|..|.... .|++ +... + ..++.+ ++.+.....+
T Consensus 19 ~~~~~y~~gpt~y~-~~HiGH~r~~v~~Dvl~R~lr-~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~ 96 (213)
T cd00672 19 GLVTMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLE-DLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFE 96 (213)
T ss_pred CCceEEEeCCccCC-CcccccchhHHHHHHHHHHHH-hcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44445567777776 7999997665443 34444 4466665543 2323 1111 1 255544 4445566777
Q ss_pred HHHHcCCCC
Q 015773 152 DIIACGFDV 160 (400)
Q Consensus 152 ~ilA~G~dp 160 (400)
++.++|+.+
T Consensus 97 ~~~~l~i~~ 105 (213)
T cd00672 97 DMKALNVLP 105 (213)
T ss_pred HHHHcCCCC
Confidence 788899876
No 46
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.15 E-value=0.056 Score=56.09 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=45.4
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
-||| .|||||+..+++.|.+-+. .|..+++-|=|--. ..+.+ .....+..++.-+|++.+. .|.||+-.
T Consensus 7 SPTG-~LHiG~artAL~n~l~Ar~-~gG~fiLRiEDTD~----~R~~~---e~~~~I~~~L~WlGl~wDe--~y~QSeR~ 75 (433)
T PRK12410 7 SPTG-DMHIGNLRAAIFNYIVAKQ-QNEDFLIRIEDTDK----ERNIE---GKDKEILEILNLFGISWDK--LVYQSENL 75 (433)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHH-cCCEEEEEeCcCCC----CcCCh---HHHHHHHHHHHHcCCCCCC--CeehhccH
Confidence 4788 7999999999998655555 46677776655221 11221 2223556666678999885 57888765
No 47
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.10 E-value=0.0056 Score=64.62 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=46.9
Q ss_pred EEeecC--CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 88 LYTGRG--PSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 88 iytG~~--PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
+.|=|. ||| .|||||+-.++..|.+-+. +|..+++-|=|.-. .. ....+...+..++.-+|++++. +
T Consensus 12 v~tRFAPsPtG-~LHiGharaAlln~l~Ar~-~gG~~iLRiEDTDp----~R---~~~e~~~~I~~dL~WLGl~wD~--~ 80 (523)
T PLN03233 12 IVTRFPPEPSG-YLHIGHAKAALLNDYYARR-YKGRLILRFDDTNP----SK---EKAEFEESIIEDLGKIEIKPDS--V 80 (523)
T ss_pred EEEeeCCCCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEECCCCC----Cc---cchHHHHHHHHHHHHhCCCCCC--C
Confidence 444454 567 7999999999998544444 46666665533111 11 1223444666777778999874 5
Q ss_pred Eecccccc
Q 015773 166 FSDFDYVG 173 (400)
Q Consensus 166 ~~~s~~~~ 173 (400)
+.||+.+.
T Consensus 81 ~~qSdr~~ 88 (523)
T PLN03233 81 SFTSDYFE 88 (523)
T ss_pred ccccccHH
Confidence 77888763
No 48
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0083 Score=62.77 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=37.8
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCC
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 285 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~n 285 (400)
+.|..|.|+-.+=..-+-|.+-||.+.|...|.++|..=+ |+||||+.+-
T Consensus 208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~--g~kLSKr~~~ 257 (472)
T COG0008 208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNED--GKKLSKRKGA 257 (472)
T ss_pred ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCC--CCeecCccCc
Confidence 4567787755554444667788999999999998888833 5799999773
No 49
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.00 E-value=0.0063 Score=63.74 Aligned_cols=75 Identities=24% Similarity=0.315 Sum_probs=45.9
Q ss_pred ceeEE-eecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHHH
Q 015773 85 KFYLY-TGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAKD 152 (400)
Q Consensus 85 ~~~iy-tG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~~ 152 (400)
.+.+| ||--|.+ .+||||+.+.+.. .+++. ..|..|..+ ++|.. +...+ ..++.++. .+.....++
T Consensus 23 ~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 23 KVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred cceEEEeCCccCC-CcccccchhHHHHHHHHHHHH-hcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34566 9988887 7999997665443 34444 457666655 34433 22221 25555544 455677778
Q ss_pred HHHcCC-CCC
Q 015773 153 IIACGF-DVT 161 (400)
Q Consensus 153 ilA~G~-dp~ 161 (400)
+.++|+ .|+
T Consensus 101 ~~~Lgi~~~d 110 (463)
T PRK00260 101 MDALNVLPPD 110 (463)
T ss_pred HHHcCCCCCC
Confidence 888998 443
No 50
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.00 E-value=0.012 Score=62.92 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=47.5
Q ss_pred EEeecC--CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 88 LYTGRG--PSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 88 iytG~~--PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
+.|=|. ||| .|||||+..++..|.+-+. +|..+++-|=|.- ... +...+...++.++..+|++.+.- +
T Consensus 53 v~tRFAPsPtG-yLHIGharaAllN~l~Ar~-~gG~~iLRiEDTD----p~R---~~~e~~d~IleDL~WLGl~wDe~-~ 122 (601)
T PTZ00402 53 VVTRFPPEASG-FLHIGHAKAALINSMLADK-YKGKLVFRFDDTN----PSK---EKEHFEQAILDDLATLGVSWDVG-P 122 (601)
T ss_pred eEEeeCCCCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEEcCCC----Ccc---cCHHHHHHHHHHHHHCCCCCCCc-e
Confidence 445454 567 7999999999998544444 5666666554411 011 22334456777888899988643 5
Q ss_pred Eeccccc
Q 015773 166 FSDFDYV 172 (400)
Q Consensus 166 ~~~s~~~ 172 (400)
+.||+..
T Consensus 123 ~~QSdr~ 129 (601)
T PTZ00402 123 TYSSDYM 129 (601)
T ss_pred eeccccH
Confidence 5677765
No 51
>PLN02907 glutamate-tRNA ligase
Probab=96.83 E-value=0.022 Score=62.79 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=46.6
Q ss_pred EEeecC--CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 88 LYTGRG--PSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 88 iytG~~--PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
+.|=|- ||| .|||||+-.++..|.+ .+.+|..+++-|=|.-. .... .++...+..++.-+|+++++ +
T Consensus 214 v~tRFaPsPtG-~LHiG~ar~al~n~~~-Ar~~~G~~iLR~eDTdp----~r~~---~e~~~~I~~dl~wLG~~~d~--~ 282 (722)
T PLN02907 214 VCTRFPPEPSG-YLHIGHAKAALLNQYF-ARRYKGKLIVRFDDTNP----SKES---DEFVENILKDIETLGIKYDA--V 282 (722)
T ss_pred eEEeeCCCCCC-cccHHHHHHHHHHHHH-HHHhCCEEEEEecCCCC----CcCC---hHHHHHHHHHHHHcCCCCCC--c
Confidence 555555 557 8999999999998443 44457676666544211 1111 22333566677778999875 4
Q ss_pred Eeccccc
Q 015773 166 FSDFDYV 172 (400)
Q Consensus 166 ~~~s~~~ 172 (400)
+.||+..
T Consensus 283 ~~qS~r~ 289 (722)
T PLN02907 283 TYTSDYF 289 (722)
T ss_pred ccccccH
Confidence 6788876
No 52
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=96.79 E-value=0.014 Score=60.78 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=44.2
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCee-eec---CcHHHHHHHhhc
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI-YVT---DSAKAIKNKINK 303 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI-~L~---D~~~~i~~KI~k 303 (400)
+.|.-|.|.-.+--.-.-|.+-||.+.|...|.++|-+-+| +|+||..+..+| .+- =.|+.|.+=+..
T Consensus 198 THViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g--~KLSKR~g~~sv~~~r~~G~~Peai~n~la~ 269 (445)
T PRK12558 198 THIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADG--KGLSKRLGGLSIRSLREDGIEPMAIASLLAR 269 (445)
T ss_pred CEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCc--ccccccCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 35566766444332335566778988999899988888776 799999764332 111 167777766644
No 53
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.011 Score=61.40 Aligned_cols=73 Identities=27% Similarity=0.302 Sum_probs=47.2
Q ss_pred eeEE-eecCCCCCCcchhhh---HHHHHHHHHHHhcCC-CcEEEEecCcc-ccccc----CCCHHHHHH-HHHHHHHHHH
Q 015773 86 FYLY-TGRGPSSEALHLGHL---VPFMFTNRYLQDAFK-VPLVIQLTDDE-KCMWK----NLSVEESQR-LARENAKDII 154 (400)
Q Consensus 86 ~~iy-tG~~PTg~~lHlGh~---i~~~~~~~~lQ~~~~-~~v~I~I~D~~-a~~~~----~~~~e~i~~-~~~~~~~~il 154 (400)
+.+| ||.-+- +..||||. +.+..+.++|+..+. +.++-=|+|.. |.+.| ..++.++.+ +..++.+++-
T Consensus 23 V~mYvCGpTVY-d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYVCGPTVY-DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEecCCccC-CccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5555 454444 58999995 455555678887655 44333489987 66654 257766544 4567777888
Q ss_pred HcCCC
Q 015773 155 ACGFD 159 (400)
Q Consensus 155 A~G~d 159 (400)
|+|+-
T Consensus 102 aL~v~ 106 (464)
T COG0215 102 ALNVL 106 (464)
T ss_pred HhCCC
Confidence 88873
No 54
>PLN02859 glutamine-tRNA ligase
Probab=96.53 E-value=0.084 Score=58.21 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHh-CCceeEEeec--CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHH
Q 015773 71 RDLNDILDAYEK-GEKFYLYTGR--GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 147 (400)
Q Consensus 71 ~d~~~ll~~~~~-g~~~~iytG~--~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~ 147 (400)
...+.+-+.++. +.+ +.|=| .||| .|||||+-.++..+.+-+. +|..+++-|=|.- ... +...+..
T Consensus 249 ~~~~~~~~hl~~t~g~--V~tRFaPsPtG-~LHiGharaallN~~~Ar~-~~G~~~LRieDTd----p~r---~~~e~~~ 317 (788)
T PLN02859 249 NTKEILEKHLKATGGK--VYTRFPPEPNG-YLHIGHAKAMFVDFGLAKE-RGGCCYLRFDDTN----PEA---EKKEYID 317 (788)
T ss_pred CcHHHHHHHHhhcCCc--eEEEeCCCCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEecCCC----CCc---cchHHHH
Confidence 333444444443 233 44545 4667 7999999999998544444 5666666553311 111 1223334
Q ss_pred HHHHHHHHcCCCCCceEEEeccccc
Q 015773 148 ENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 148 ~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
.+..++.-+|+++++ ++.||++.
T Consensus 318 ~I~edL~WLG~~~d~--~~~qSd~f 340 (788)
T PLN02859 318 HIEEIVEWMGWEPFK--ITYTSDYF 340 (788)
T ss_pred HHHHHHHHcCCCCCC--cccccHhH
Confidence 556666678999874 56788776
No 55
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=96.48 E-value=0.015 Score=54.40 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=34.2
Q ss_pred ccccCchhHHHHHHHHHhhhCCC-CCeeee--cccccCCCCCCCcCCCCCC
Q 015773 237 PCAIDQDPYFRMTRDVAPRIGYH-KPALIE--SSFFPALQGETGKMSASDP 284 (400)
Q Consensus 237 p~G~DQd~~~~l~rdla~r~~~~-kp~~l~--~~~lp~L~G~~~KMSKS~~ 284 (400)
.+|.||..|+.-.+.+++.+|.. .|...| ..++.+-+ |+||||..+
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~--~~kmS~R~G 212 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPK--EGKMSTRAG 212 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCC--CCCCCCCCC
Confidence 79999999999999999999975 333323 35565433 489999754
No 56
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.25 E-value=0.0032 Score=64.22 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=53.6
Q ss_pred HHHHHHHhhhCCCCCeeeecc---cccCCCCCCCcCCCCCC--CCeeeecCcHHHHHHHhhcccccCCcc
Q 015773 247 RMTRDVAPRIGYHKPALIESS---FFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKYAFSGGQE 311 (400)
Q Consensus 247 ~l~rdla~r~~~~kp~~l~~~---~lp~L~G~~~KMSKS~~--nsaI~L~D~~~~i~~KI~k~A~t~~~~ 311 (400)
.++|++..+..+..|..++.. ..+|.++ ++|||+|.+ +++||+.|+|+++.+|+++ +||....
T Consensus 196 dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~-~~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k-~~t~~~~ 263 (377)
T TIGR00234 196 DLIRRNLPSLGFGLTVPLLTPADGEKMGKSG-GGAVSLDEGKYDFYQFWINTPDEDVKKILK-LFTFLGL 263 (377)
T ss_pred HHHHHhcCCCceeeceeeecCCCCCCccCCC-CCcccCCccHhhhhhhhcCCcHHHHHHHHH-HcCCCcH
Confidence 388999887777777767655 7899987 589999988 7899999999999999999 9998653
No 57
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.10 E-value=0.047 Score=57.31 Aligned_cols=78 Identities=21% Similarity=0.197 Sum_probs=46.0
Q ss_pred hCCceeEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHHH-HHHHHH
Q 015773 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQR-LARENA 150 (400)
Q Consensus 82 ~g~~~~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~~-~~~~~~ 150 (400)
.++.-...||--|.+ .+||||..+++.. .++|+. .|..|..+ ++|.. +...+ ..++.++.+ +.....
T Consensus 19 ~~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr~-~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~ 96 (465)
T TIGR00435 19 QGKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLRY-LGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYF 96 (465)
T ss_pred CCcceEEEecCccCC-CcccccchHHHHHHHHHHHHHH-cCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344445667887777 7999997665443 455554 46655544 33322 22221 356655544 445666
Q ss_pred HHHHHcCCCCC
Q 015773 151 KDIIACGFDVT 161 (400)
Q Consensus 151 ~~ilA~G~dp~ 161 (400)
+++.++|+.++
T Consensus 97 ~dl~~LgI~~d 107 (465)
T TIGR00435 97 EDMKALNVLPP 107 (465)
T ss_pred HHHHHhCCCCC
Confidence 77778888643
No 58
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=94.44 E-value=0.28 Score=52.34 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=51.5
Q ss_pred HHHHHHhCCceeEEeecC--CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHH
Q 015773 76 ILDAYEKGEKFYLYTGRG--PSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDI 153 (400)
Q Consensus 76 ll~~~~~g~~~~iytG~~--PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~i 153 (400)
+.+.+++|+--.+.|=|. ||| .|||||+-.++..+.+-+. +|..+++-|=|-- ... ....+...+..++
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG-~LHiG~ar~al~n~~~Ar~-~~G~~iLRieDTd----~~r---~~~e~~~~I~~dL 88 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNG-YLHIGHAKSICLNFGLAQD-YGGKCNLRFDDTN----PEK---EDQEYVDSIKEDV 88 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEECCCC----CCc---CChHHHHHHHHHH
Confidence 344456654323555555 557 7999999999998544444 5666666654411 111 1123334566677
Q ss_pred HHcCCCCCceEEEeccccc
Q 015773 154 IACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 154 lA~G~dp~kt~i~~~s~~~ 172 (400)
.-+|++++.- ++.||+..
T Consensus 89 ~wLGi~~d~~-~~~qS~r~ 106 (554)
T PRK05347 89 RWLGFDWSGE-LRYASDYF 106 (554)
T ss_pred HHcCCCCCCC-ceeeecCH
Confidence 7789998432 56677765
No 59
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=94.39 E-value=0.036 Score=54.84 Aligned_cols=55 Identities=22% Similarity=0.132 Sum_probs=35.7
Q ss_pred eeccccCch-hHHHHHHHHHhhhCCC-CCe-eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQD-PYFRMTRDVAPRIGYH-KPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd-~~~~l~rdla~r~~~~-kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.||. +|+....-...-++.. .|. .+.+.++.. .| |+|||||.+| +|++.|
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~-g~KmSKS~gn-~v~~~d 286 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLD-EG-GQKMSKSKGN-VIDPSD 286 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEc-CC-CccccccCCC-cCCHHH
Confidence 568999999 7766554444445543 232 233555553 33 4899999999 898865
No 60
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=93.69 E-value=0.24 Score=52.52 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=44.0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
.||| .|||||+-.++..|.+-+. +|..+++-|=|.-. .... ..+...+..++.-+|++++.. ++.||+..
T Consensus 8 sPtG-~LHiG~ar~al~n~~~A~~-~~G~~iLRieDTd~----~r~~---~e~~~~I~~dL~wLG~~~d~~-~~~qS~~~ 77 (522)
T TIGR00440 8 EPNG-YLHIGHAKSICLNFGYAKY-YNGTCNLRFDDTNP----VKED---PEYVESIKRDVEWLGFKWEGK-IRYSSDYF 77 (522)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEEcCCCc----ccCC---hHHHHHHHHHHHHcCCCCCCC-ceEccccH
Confidence 4788 7999999999998544444 56666666544211 1111 233345666777789998432 45677765
No 61
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=93.48 E-value=0.22 Score=53.22 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=47.8
Q ss_pred ceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015773 85 KFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 164 (400)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 164 (400)
++..=-.=.||| .|||||+..++..+.+-+. +|..+++-|=|.-. .. ....+...+..++.-+|++++..
T Consensus 51 kv~tRFaPsPtG-~LHiGharaalln~~~Ar~-~gG~~iLRiEDTDp----~r---~~~e~~~~I~~dL~wLGi~~D~~- 120 (574)
T PTZ00437 51 KPYFRFPPEPNG-FLHIGHAKSMNLNFGSARA-HGGKCYLRYDDTNP----ET---EEQVYIDAIMEMVKWMGWKPDWV- 120 (574)
T ss_pred cEEEEeCCCCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEECCCCc----cc---cChHHHHHHHHHHHHcCCCCCCC-
Confidence 333333445667 7999999999998544444 56666666544210 11 22334446667777789998754
Q ss_pred EEecccccc
Q 015773 165 IFSDFDYVG 173 (400)
Q Consensus 165 i~~~s~~~~ 173 (400)
+.||++..
T Consensus 121 -~~qS~y~~ 128 (574)
T PTZ00437 121 -TFSSDYFD 128 (574)
T ss_pred -CcCchhHH
Confidence 46777763
No 62
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=93.23 E-value=0.21 Score=53.53 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=48.1
Q ss_pred EEeecC--CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 88 LYTGRG--PSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 88 iytG~~--PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
+.|=|- ||| .|||||+..++..+. +.+.+|..+++-|-|.-. ... ...+...+..++..+|++++ .+
T Consensus 94 vvtRFaPsPtG-~LHiGharaalln~~-~Ar~~~G~~iLRidDTDp----~R~---~~e~~~~I~edL~wLGi~~d--~~ 162 (560)
T TIGR00463 94 VVMRFAPNPSG-PLHIGHARAAILNQY-FAKKYKGKLIIRFDDTDP----RRV---KPEAYDMILEDLDWLGVKGD--EV 162 (560)
T ss_pred eEEEeCCCCCC-CccHHHHHHHHHHHH-HHHhcCCEEEEEeCcCCc----ccc---cHHHHHHHHHHHHHcCCCCC--cc
Confidence 455555 556 799999999998843 444467777776655211 111 12344466777778999987 46
Q ss_pred Eeccccc
Q 015773 166 FSDFDYV 172 (400)
Q Consensus 166 ~~~s~~~ 172 (400)
+.||+.+
T Consensus 163 ~~qSd~~ 169 (560)
T TIGR00463 163 VYQSDRI 169 (560)
T ss_pred ccccccH
Confidence 7788876
No 63
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=92.94 E-value=0.67 Score=51.50 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=51.7
Q ss_pred HHHHHHhCCceeEEeecCC--CCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHH
Q 015773 76 ILDAYEKGEKFYLYTGRGP--SSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDI 153 (400)
Q Consensus 76 ll~~~~~g~~~~iytG~~P--Tg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~i 153 (400)
+.+.++.|..-.+.|=|-| || .|||||+-.++..|.+-+. +|..+++-|=|.- ... ....+...+..++
T Consensus 20 ~~~~l~~g~~~~v~tRFaPsPtG-~lHiGhar~alln~~~A~~-~~G~~~LR~eDTd----~~r---~~~e~~~~I~~dl 90 (771)
T PRK14703 20 IEEDLEAGRYPRVVTRFPPEPNG-YLHIGHAKSILLNFGIARD-YGGRCHLRMDDTN----PET---EDTEYVEAIKDDV 90 (771)
T ss_pred HHHHHhcCCCCceEEEeCcCCCC-cccHHHHHHHHHHHHHHHH-hCCEEEEEeCCCC----CCc---CChHHHHHHHHHH
Confidence 3444555543345666654 57 7999999999998544444 5666666554411 111 1123334556666
Q ss_pred HHcCCCCCceEEEeccccc
Q 015773 154 IACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 154 lA~G~dp~kt~i~~~s~~~ 172 (400)
.-+|++++.. ++.||+..
T Consensus 91 ~wLG~~wd~~-~~~qS~~~ 108 (771)
T PRK14703 91 RWLGFDWGEH-LYYASDYF 108 (771)
T ss_pred HHcCCCCCCC-ceEeecCH
Confidence 7789987543 56677765
No 64
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=92.79 E-value=0.44 Score=47.47 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=38.6
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCe
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 287 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsa 287 (400)
+.|.-|.|-...--.-+-|.+.||.+.|...|.+.+...+| +|+||++...+
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~ 252 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKS 252 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHB
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhcccc
Confidence 46777877555444446778889998898889988888876 89999977544
No 65
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.83 E-value=0.17 Score=50.81 Aligned_cols=54 Identities=26% Similarity=0.204 Sum_probs=32.9
Q ss_pred eeccccCchh-HHHHH--HHHHhhhCCCCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDP-YFRMT--RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~-~~~l~--rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.|+-+ |+-.. .-++ -.+...| ..+.+.++...+| +|||||.+| +|++.|
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g--~KmSKS~gn-~i~~~~ 312 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDG--RKMSKSLGN-YVDPQE 312 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCC--CCCCCCCCC-cCCHHH
Confidence 5678999975 33222 2222 1233222 3344667755665 899999999 898755
No 66
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.75 E-value=0.2 Score=51.42 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=70.8
Q ss_pred CCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchh-----Hhhh---hcCCCcccchHHHHHhh------ccC--Ch
Q 015773 276 TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESV-----ELHR---KLGANLEVDIPVKYLSF------FLE--DD 339 (400)
Q Consensus 276 ~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~-----e~~~---~~g~~p~v~v~~~~l~~------f~~--~~ 339 (400)
|.+||+|+++|++.+.+.+..|..|+++ +||.....+ ++-. ..+.+|-. +-.+|.+ +-. -.
T Consensus 231 ~a~~~~s~~~Sp~~~yq~~~~i~D~~~~-~~~~~~t~l~~~eI~~i~~~~~~~~~~r~--~k~~LA~e~~~~~hG~~~a~ 307 (401)
T COG0162 231 GAVWLDSEKTSPYDFYQYWMNIEDADVK-RFLKLLTFLSLEEIEEIEKYVLKGPEPRE--AKKLLAKEVTKLVHGEEAAE 307 (401)
T ss_pred CceEccCCCCCcHhhhhcHhcCcHHHHH-HHHHHhCcCChHHHHHHHHHhhcCCChHH--HHHHHHHHhhHhhcCHHHHH
Confidence 3699999999999999999999999999 999765211 1111 12223311 1112221 111 23
Q ss_pred HHHHHHHHHHhcC---CCChHHHHH-----HHHHHHHHHhhhHHHHHHH
Q 015773 340 AELEHIKKEYGAG---GMLTGEVKQ-----RLAKVLTELVERHQVARAA 380 (400)
Q Consensus 340 ~eleei~~~~~~g---~~~~~~lK~-----~La~~i~~~l~~~~~~~~~ 380 (400)
+..++.+..|..| .+++.++|. .++..+...|.|.+.....
T Consensus 308 ~a~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr 356 (401)
T COG0162 308 AAEEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARR 356 (401)
T ss_pred HHHHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHh
Confidence 5578889999998 899999999 8888888888888765444
No 67
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=89.80 E-value=1.1 Score=36.73 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=36.7
Q ss_pred EEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 015773 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 159 (400)
Q Consensus 88 iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~d 159 (400)
+++|-.| +.+|+||+..+... ..+++ .+++.++|.+....+ .....+.++.....+.++.+|.+
T Consensus 2 ~~~~G~F--dp~H~GH~~l~~~a-~~~~d----~~i~~i~~~~~~~~~-~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 2 ARFPGEP--GYLHIGHAKLICRA-KGIAD----QCVVRIDDNPPVKVW-QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EEeCCCC--CCCCHHHHHHHHHH-HHhCC----cEEEEEcCCCccccc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 3445444 47999999985444 55542 466777887765432 23455555544444444555653
No 68
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=89.51 E-value=0.32 Score=52.33 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=41.7
Q ss_pred eccccCchhHHHHHHHHHhhhCCCCCeee-ecccccCCCCCCCcCCCCCCCCeeeecCcHHH
Q 015773 236 IPCAIDQDPYFRMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTDSAKA 296 (400)
Q Consensus 236 vp~G~DQd~~~~l~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~ 296 (400)
--+|.||..|+.-...++..+|++.|.-+ ++.+-. ..+ .|||||.|| .|.+.|=.++
T Consensus 332 ~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~-V~~--~kmSkr~Gn-~V~~~dll~~ 389 (566)
T TIGR00456 332 YVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGM-VPL--GSMKTRRGN-VISLDNLLDE 389 (566)
T ss_pred EEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEE-EEC--CCCCccCCc-eeeHHHHHHH
Confidence 37999999999999999999998666433 332211 122 699999988 9999864443
No 69
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.47 E-value=0.58 Score=51.85 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=34.0
Q ss_pred eeccccCchhHHHHHHHHH--hhhCCCCCe--eeecccccCCCCCCCcCCCCCCCCee
Q 015773 235 LIPCAIDQDPYFRMTRDVA--PRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAI 288 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla--~r~~~~kp~--~l~~~~lp~L~G~~~KMSKS~~nsaI 288 (400)
++--|-| --+|=++|-++ -+|...-|. ++.++++..-+| .|||||.|| .|
T Consensus 549 llETG~D-ILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~G--RKMSKSLGN-VI 602 (995)
T KOG0432|consen 549 LLETGHD-ILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHG--RKMSKSLGN-VI 602 (995)
T ss_pred hhhcCch-HHHHHHHHHHHhhhhhcCCCCchheeechhhccccc--cccchhhcc-cc
Confidence 4566777 55565666544 344444453 456888888886 899999999 55
No 70
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.25 E-value=0.29 Score=50.00 Aligned_cols=55 Identities=20% Similarity=0.104 Sum_probs=33.9
Q ss_pred eeccccCchhHHHHH-HHHHhhhCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMT-RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~-rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||....-.. .-.+..+....| ..+.+.++..+.| +|||||.+| .|++.|
T Consensus 299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~Gn-~v~~~d 356 (382)
T cd00817 299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSLGN-VIDPLD 356 (382)
T ss_pred eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccCCC-CCCHHH
Confidence 667899987543222 222222322334 3345677766665 899999999 888755
No 71
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=88.80 E-value=0.25 Score=49.11 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=33.3
Q ss_pred eeccccCchhHH----HHHHHHHhhhCC---CCCee-eecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYF----RMTRDVAPRIGY---HKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~----~l~rdla~r~~~---~kp~~-l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+-.+|.||-++. .+-..++...++ ..|.. +.+-++. +.| +|||||.+| +|++.|
T Consensus 227 i~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 227 IYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSKGN-VVTPDE 288 (314)
T ss_pred eeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcCCC-CCCHHH
Confidence 446899985533 333444444553 33422 2344444 554 899999998 999876
No 72
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=88.67 E-value=1.3 Score=48.61 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=45.9
Q ss_pred CceeEEeec-CCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEecCcc-c--cccc----CCCHHH-HHHHHHHHHH
Q 015773 84 EKFYLYTGR-GPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQLTDDE-K--CMWK----NLSVEE-SQRLARENAK 151 (400)
Q Consensus 84 ~~~~iytG~-~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I~D~~-a--~~~~----~~~~e~-i~~~~~~~~~ 151 (400)
++++|-|++ -|+| .+||||+.+.+.. .+|+ +.-|..|..+.|+++ . ...+ ..++.+ +.++..++.+
T Consensus 2 ~~~~itt~~py~ng-~~HiGH~~~~l~aDv~aR~~-r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~ 79 (673)
T PRK00133 2 RKILVTCALPYANG-PIHLGHLVEYIQADIWVRYQ-RMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKR 79 (673)
T ss_pred CCEEEeCCCCCCCC-cccccchHHHHHHHHHHHHH-HhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467888888 6888 7999998875543 3444 445777766655543 2 1111 245444 3445556666
Q ss_pred HHHHcCCCCC
Q 015773 152 DIIACGFDVT 161 (400)
Q Consensus 152 ~ilA~G~dp~ 161 (400)
.+.++|++.+
T Consensus 80 ~~~~l~i~~d 89 (673)
T PRK00133 80 DFAGFGISFD 89 (673)
T ss_pred HHHHhCCCCC
Confidence 6777776543
No 73
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.62 E-value=1.2 Score=47.14 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=44.2
Q ss_pred ecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015773 91 GRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 164 (400)
Q Consensus 91 G~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 164 (400)
-=+||| .|||||.-.++.. .|+|.+|...+++-.-| + +-.-.-++.++ .++.++--+|+.|++.+
T Consensus 206 PPEpSG-yLHIGHAKAALLN-qYfa~~~~G~LIvRFDD-T---NPaKE~~eFe~---~IleDl~~LgIkpd~~T 270 (712)
T KOG1147|consen 206 PPEPSG-YLHIGHAKAALLN-QYFAQAYQGKLIVRFDD-T---NPAKENEEFED---VILEDLSLLGIKPDRVT 270 (712)
T ss_pred CCCCCc-eeehhhHHHHHHH-HHHHHhcCceEEEEecC-C---CcchhhHHHHH---HHHHHHHHhCcCcceee
Confidence 347787 8999999999998 89999988888775433 2 01123333332 44566666899987544
No 74
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=87.41 E-value=0.57 Score=53.60 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=32.5
Q ss_pred eeccccCchh-HHHHHHHHHhh--hCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeec
Q 015773 235 LIPCAIDQDP-YFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 291 (400)
Q Consensus 235 ~vp~G~DQd~-~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~ 291 (400)
+...|.||.. ||.-+ +... +....| .++.+.++...+| +|||||.+| .|...
T Consensus 586 ~~~eG~Di~rgWF~s~--ll~s~~~~~~~P~k~V~~HG~vld~~G--~KMSKSlGN-vIdP~ 642 (961)
T PRK13804 586 LYLEGSDQHRGWFNSS--LLESCGTRGRAPYKAVLTHGFTLDEKG--EKMSKSLGN-TVSPQ 642 (961)
T ss_pred EEEEEcccccHHHHHH--HHHHHHhcCCCChhhEEEeccEECCCC--CCccCCCCC-cCCHH
Confidence 6689999985 44322 2222 222234 4455777777776 899999999 66543
No 75
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=87.21 E-value=0.56 Score=53.32 Aligned_cols=52 Identities=29% Similarity=0.251 Sum_probs=33.4
Q ss_pred eeccccCchh-HH--HHHHHHHhhhCCCCC-eeeecccccCCCCCCCcCCCCCCCCeeee
Q 015773 235 LIPCAIDQDP-YF--RMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 290 (400)
Q Consensus 235 ~vp~G~DQd~-~~--~l~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L 290 (400)
+...|.||.. |+ .+-..++- .|.+.+ .++.+.++...+| +|||||.+| .|..
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSlGN-vIdP 603 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSLGN-VIDP 603 (912)
T ss_pred EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCCCC-cCCH
Confidence 6689999974 32 33344443 454434 3344677777775 899999999 6543
No 76
>PLN02224 methionine-tRNA ligase
Probab=86.49 E-value=1.6 Score=47.59 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=53.4
Q ss_pred cCcccccCCHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEe-cCcccc--ccc--
Q 015773 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQL-TDDEKC--MWK-- 135 (400)
Q Consensus 64 Rgi~~~~~d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I-~D~~a~--~~~-- 135 (400)
|.||+..++.+.- ..+++++++-|+. -|+| .+||||+.+.+.. ..++++.-|..|..+- .|.|.. ...
T Consensus 52 ~~~~~~~~~~~~~---~~~~~~~~ittp~pY~NG-~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~ 127 (616)
T PLN02224 52 RALYCTSSSQEST---VDEADTFVLTTPLYYVNA-PPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA 127 (616)
T ss_pred ceeeccCCCcccC---CCCCCeEEEeCCCCCCCC-CCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH
Confidence 4455555554421 1345678888888 7787 7999998876544 1333444466555543 455542 111
Q ss_pred --CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 015773 136 --NLSV-EESQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 136 --~~~~-e~i~~~~~~~~~~ilA~G~dp~ 161 (400)
..++ +-+++++....+.+.++|++++
T Consensus 128 ~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 128 ANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 2333 4455555555566667777654
No 77
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=86.45 E-value=0.6 Score=50.62 Aligned_cols=54 Identities=24% Similarity=0.151 Sum_probs=30.3
Q ss_pred eeccccCchhHH-HHHHHHHhhhCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeec
Q 015773 235 LIPCAIDQDPYF-RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 291 (400)
Q Consensus 235 ~vp~G~DQd~~~-~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~ 291 (400)
+..-|.||-... ....-+...+....| .++.+.++...+| +|||||.+| .|...
T Consensus 517 ~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~GN-vi~p~ 573 (601)
T PF00133_consen 517 LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSKGN-VIDPE 573 (601)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTTTB---BHH
T ss_pred cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCCCc-ccCHH
Confidence 667899997643 323323223333334 4556778877776 899999999 66543
No 78
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.35 E-value=0.42 Score=50.43 Aligned_cols=52 Identities=27% Similarity=0.258 Sum_probs=33.7
Q ss_pred eeccccCchhHHHH---HHHHHhhhCCCCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRM---TRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l---~rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||..+.-. +.-.+ ++.+.| ..+++.++. ++| +|||||.+| .|++.|
T Consensus 257 ~~~~G~D~~~~h~~~~~a~~~a--~~~~~p~~~~~~g~v~-~~G--~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 257 VHLIGKDILRFHAVYWPAFLMA--AGLPLPKRVFAHGFLT-LDG--EKMSKSLGN-VIDPFD 312 (511)
T ss_pred ceEecccccccchhHHHHHHHh--CCCCCCCEEEeeccEE-ECC--eeecccCCc-EEcHHH
Confidence 46789999885222 22222 254555 344566665 565 899999999 998865
No 79
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=86.30 E-value=0.62 Score=52.65 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=32.7
Q ss_pred eeccccCchh-HHHHHHHHHhh-hCCCCCe-eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDP-YFRMTRDVAPR-IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~-~~~l~rdla~r-~~~~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-. |+-.....+-- ++...|. .+.+.++...+| +|||||.+| .|+..|
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G--~KMSKSkGN-vI~p~d 624 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKG--RKMSKSLGN-VVDPLK 624 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCC--CCcCCCCCC-CCCHHH
Confidence 6789999966 33333222221 2433332 334556655554 899999999 777654
No 80
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=84.48 E-value=2.3 Score=47.72 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCceeEEeecCCC--CCCcchhhhHHHHHH--HHHHHhcCCCcEEEEec-Ccccccc------cCCCH-HHHHHHHHHHH
Q 015773 83 GEKFYLYTGRGPS--SEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLT-DDEKCMW------KNLSV-EESQRLARENA 150 (400)
Q Consensus 83 g~~~~iytG~~PT--g~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~-D~~a~~~------~~~~~-e~i~~~~~~~~ 150 (400)
++++++..|+ |+ | .||+||+...... ..++|+.-|..|....| |.|+.-. ...+. +-+.++..++.
T Consensus 31 ~~~~~i~~~p-Py~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 108 (805)
T PRK00390 31 SKKYYVLDMF-PYPSG-GLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (805)
T ss_pred CCCEEEEccC-CCCCC-CcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578888887 76 7 7999998876443 24456655666665544 4333211 12333 33444556666
Q ss_pred HHHHHcCCCCC
Q 015773 151 KDIIACGFDVT 161 (400)
Q Consensus 151 ~~ilA~G~dp~ 161 (400)
+++.++|+..+
T Consensus 109 ~~~~~lGi~~D 119 (805)
T PRK00390 109 KQLKSLGFSYD 119 (805)
T ss_pred HHHHHhCCccc
Confidence 77788888544
No 81
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.93 E-value=1.7 Score=49.27 Aligned_cols=59 Identities=19% Similarity=0.185 Sum_probs=36.5
Q ss_pred eeccccCch-hHHHHHHHHHhhhCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHH
Q 015773 235 LIPCAIDQD-PYFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 300 (400)
Q Consensus 235 ~vp~G~DQd-~~~~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~K 300 (400)
++.=|.||. .||.-.--+.--+....| .++++-|+..=+ |.|||||.+| .| +|.+|-+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~--GrKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEK--GRKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCC--CCCccccCCC-cC----CHHHHHHh
Confidence 677799985 577554333332333345 345666766655 4999999999 44 45656554
No 82
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.82 E-value=2.7 Score=45.21 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=43.7
Q ss_pred CceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEe-cCcccc--ccc----CCCHHHH-HHHHHHHHHH
Q 015773 84 EKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQL-TDDEKC--MWK----NLSVEES-QRLARENAKD 152 (400)
Q Consensus 84 ~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I-~D~~a~--~~~----~~~~e~i-~~~~~~~~~~ 152 (400)
++++|-|.+= |.| .+||||+.+.+.. +.++|+.-|..++.+- +|.|.. ..+ ..+++++ .++..+....
T Consensus 5 ~~~~VTtalpY~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 5 KKILVTTALPYPNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CcEEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4555555543 556 8999998876665 3556666677666654 455532 222 3566554 4455555555
Q ss_pred HHHcCCC
Q 015773 153 IIACGFD 159 (400)
Q Consensus 153 ilA~G~d 159 (400)
+.+++++
T Consensus 84 ~~~l~Is 90 (558)
T COG0143 84 FKALNIS 90 (558)
T ss_pred HHHhCCc
Confidence 6666554
No 83
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=83.72 E-value=0.92 Score=48.81 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=41.7
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCCe-e--eecccccCCCCCCCcCCCCCCCCeeeecCcHH
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-L--IESSFFPALQGETGKMSASDPNSAIYVTDSAK 295 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp~-~--l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~ 295 (400)
+--+|.||..|+.-...+++.+|+..+. . +..-++- +. |+||||-.|+ +|.|+|=-+
T Consensus 328 IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~--g~kmStR~G~-~v~l~dLld 387 (562)
T PRK12451 328 LYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KD--GKKMSTRKGR-VVLLEEVLE 387 (562)
T ss_pred EEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cC--CCCCcCCCCC-eeEHHHHHH
Confidence 3379999999999999999999975332 2 2222343 34 4799999888 999988333
No 84
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=83.10 E-value=0.86 Score=45.27 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=31.8
Q ss_pred eeccccCchhHHHHH-HHHHhhhCCCCCeeee-cccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+-.+|.|+-.+.-+. --+..-.+.+.|..+. +.++ .+.| +|||||.+| +|++.|
T Consensus 238 v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~gn-~i~~~~ 293 (319)
T cd00814 238 VHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSRGN-VVDPDD 293 (319)
T ss_pred EEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccCCc-ccCHHH
Confidence 447999988754222 1122224454454433 3333 3454 899999999 898755
No 85
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.44 E-value=5.4 Score=43.10 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=49.6
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCe-eeecccccCCC-CCCCcCCCCCCCCeeeecCcHHHHHHHh
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKNKI 301 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~-G~~~KMSKS~~nsaI~L~D~~~~i~~KI 301 (400)
++--+|.||.+|+.-.+-++..+|+..+. .+.+..+.... |.+.||||=.++ .|.|.|--+++.+|-
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~era 405 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAGERA 405 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHHHHh
Confidence 45579999999999999999999987663 33333333333 346899999888 999999777776443
No 86
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=82.39 E-value=1.2 Score=49.93 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=32.0
Q ss_pred eeccccCchhHHHHHHHHHhh--hCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-.. -+.+-++.. +....| ..+.+.++...+| +|||||.+| .|+..|
T Consensus 489 ~~~~G~Di~~~-w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 546 (800)
T PRK13208 489 LRPQGHDIIRT-WLFYTILRAYLLTGKLPWKNIMISGMVLDPDG--KKMSKSKGN-VVTPEE 546 (800)
T ss_pred EEEeecchhhh-HHHHHHHHHHHhcCCCCcceEEEeeEEECCCC--CCCCCCCCC-CCCHHH
Confidence 55689998752 223223222 112234 3344667766675 899999999 777644
No 87
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=81.44 E-value=1.5 Score=50.41 Aligned_cols=55 Identities=20% Similarity=0.090 Sum_probs=30.9
Q ss_pred eeccccCchhH-HHHHHHHHh-hhCCCCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPY-FRMTRDVAP-RIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~-~~l~rdla~-r~~~~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
++..|.||-.. +-....+.- -++.+.+ ..+.+.++...+| +|||||.+| .|...|
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G--~KMSKSlGN-vIdP~d 605 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDG--QKMSKSLGN-YVDPFE 605 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCC--CCcCCCCCC-cCCHHH
Confidence 56789999752 222222111 1233222 3344666665565 899999999 776543
No 88
>PLN02843 isoleucyl-tRNA synthetase
Probab=81.07 E-value=1.6 Score=50.13 Aligned_cols=52 Identities=25% Similarity=0.169 Sum_probs=31.2
Q ss_pred eeccccCchh--HHHHH-HHHHhhhCCCCC-eeeecccccCCCCCCCcCCCCCCCCeeee
Q 015773 235 LIPCAIDQDP--YFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 290 (400)
Q Consensus 235 ~vp~G~DQd~--~~~l~-rdla~r~~~~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L 290 (400)
+...|.||.. +..+. .-++- .|...+ ..+.+.++..-+| +|||||.+| .|..
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~~-~g~~Pfk~v~~HG~vld~~G--~KMSKSlGN-vI~p 622 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVAT-KGKAPYKSVLTHGFVLDEKG--FKMSKSLGN-VVDP 622 (974)
T ss_pred eeeeeccccchHHHHHHHHHHHh-cCCCccceEEEeccEECCCC--CCcCCCCCC-cCCH
Confidence 6688999987 22222 22221 333222 3345677766665 899999999 6643
No 89
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=80.74 E-value=3.6 Score=42.30 Aligned_cols=53 Identities=28% Similarity=0.301 Sum_probs=30.6
Q ss_pred eeeccccCchhHHHHH---HHHHhhhCCCCCeeee-cccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 234 CLIPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~---rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
.+..+|.|--++.-+- --+| .+.+.|..+. +-++. ++| +|||||.+| +||..|
T Consensus 284 ~v~~iGkDi~~fH~i~~pa~l~a--~~~~lP~~i~~~~~~~-~~g--~K~SkS~gn-~i~~~~ 340 (391)
T PF09334_consen 284 IVHFIGKDIIRFHAIYWPAMLLA--AGLPLPRRIVVHGFLT-LDG--EKMSKSRGN-VIWPDD 340 (391)
T ss_dssp EEEEEEGGGHHHHHTHHHHHHHH--CTB---SEEEEE--EE-ETT--CCEETTTTE-SSBHHH
T ss_pred EEEEEccchhHHHHHHhHHHHhc--ccCCCCCEEEeeeeEE-ECC--eeccccCCc-ccCHHH
Confidence 3457888866555443 2233 5556665543 44444 565 899999988 998755
No 90
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=80.37 E-value=1.5 Score=49.59 Aligned_cols=54 Identities=24% Similarity=0.213 Sum_probs=35.1
Q ss_pred eeccccCchhHHHHHHHHHhh--hCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-.+. .+|-++.- +....| .++.+.++...+| +|||||.+| .|++.|
T Consensus 481 ~~~~G~Dii~fw-~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFW-VARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSLGN-VIDPLD 538 (861)
T ss_pred eeecchhhhhHH-HHHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCCCC-CCCHHH
Confidence 668999987654 33333332 222345 3445777777776 899999999 777654
No 91
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=79.72 E-value=1.6 Score=46.36 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=32.5
Q ss_pred eeccccCchhHHHHH-HHHHhhhCCCCCeee-ecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.|..++.-+. .-+..-++.+.|..+ .+-++. +.| +|||||.+| .|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~g--~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VEG--GKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-ECC--ceecccCCc-eecHHH
Confidence 558999988853322 112222445445333 344443 334 899999999 888765
No 92
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=79.26 E-value=1.4 Score=47.24 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=32.4
Q ss_pred eeccccCchhHHHHH-HHHHhhhC--CCCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMT-RDVAPRIG--YHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~-rdla~r~~--~~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.|+-++..+. --+..-.+ ++.| ..+.+-++. ++| +|||||.+| .|+..|
T Consensus 290 ~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 290 YYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCCCc-ccCHHH
Confidence 456899987755432 22222233 4445 333455554 464 899999999 887665
No 93
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=78.98 E-value=12 Score=41.35 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=32.7
Q ss_pred eeccccCchhHHHH---HHHHHhhhCCCCCeee-ecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l---~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.|=..+..+ +.-++ .|++.|..+ .+.++.. +| +|||||.+| .|+..|
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~GN-vV~p~d 342 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSRGT-FIWART 342 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccCCc-ccCHHH
Confidence 33589886665433 23333 456556444 3555554 65 899999999 887655
No 94
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=78.43 E-value=1.2 Score=48.66 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=32.0
Q ss_pred eeccccCchhHHHHH-HHHHhhhCCCCCeee-ecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||..+.-+- --+..-.+++.|..+ .+.++. +. |+|||||.+| .|+..|
T Consensus 257 ~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~e--g~KMSKS~GN-~i~p~d 312 (648)
T PRK12267 257 VHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MK--DGKMSKSKGN-VVDPEE 312 (648)
T ss_pred eEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-EC--CceecccCCc-ccCHHH
Confidence 557899998744322 011112455556444 344443 34 4899999999 888755
No 95
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=78.37 E-value=1.7 Score=49.25 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=35.3
Q ss_pred eeccccCchhHHHHHHHHHhhhC--CCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-.+. .+|-++..+. ...| .++.+.++...+| +|||||.|| .|...|
T Consensus 476 ~~~~G~Dii~~W-~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSlGN-vIdP~d 533 (874)
T PRK05729 476 VLVTGFDIIFFW-VARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSKGN-VIDPLD 533 (874)
T ss_pred cccccccccchH-HHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCCCC-CCCHHH
Confidence 567899987653 3444443322 2345 3445777877776 899999999 777654
No 96
>PLN02943 aminoacyl-tRNA ligase
Probab=77.69 E-value=1.8 Score=49.64 Aligned_cols=54 Identities=26% Similarity=0.166 Sum_probs=35.1
Q ss_pred eeccccCchhHHHHHHHHHhhhC--CCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-. +=++|-++.-+. ...| ....+.++...+| +|||||.|| .|+..|
T Consensus 539 l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~GN-~i~p~~ 596 (958)
T PLN02943 539 VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTLGN-VIDPLD 596 (958)
T ss_pred EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcCCC-CCCHHH
Confidence 5567999874 344554443322 2335 2445777777776 899999999 787655
No 97
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=77.47 E-value=1.9 Score=49.96 Aligned_cols=54 Identities=17% Similarity=0.114 Sum_probs=34.7
Q ss_pred eeccccCchhHHHHHHHHHhhhC--CCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIG--YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~--~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-.+ =.+|-++..+. ...| .++.+.++..-+| +|||||.+| .|+..|
T Consensus 494 ~~~~G~Dii~~-W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSkGN-vIdP~d 551 (1052)
T PRK14900 494 VMETGHDIIFF-WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTKGN-VIDPLV 551 (1052)
T ss_pred hhcccccHHhH-HHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCCCC-CCCHHH
Confidence 55788888754 34455554332 2345 3445777776665 899999999 887655
No 98
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=77.46 E-value=5.4 Score=42.70 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=42.9
Q ss_pred eEEeecCCC--CCCcchhhhHHH-H---HHHHHHHhcCCCcEEEEe-cCccccc--c---c-CCCHHHH-HHHHHHHHHH
Q 015773 87 YLYTGRGPS--SEALHLGHLVPF-M---FTNRYLQDAFKVPLVIQL-TDDEKCM--W---K-NLSVEES-QRLARENAKD 152 (400)
Q Consensus 87 ~iytG~~PT--g~~lHlGh~i~~-~---~~~~~lQ~~~~~~v~I~I-~D~~a~~--~---~-~~~~e~i-~~~~~~~~~~ 152 (400)
++.|.-=|+ | .+||||+.+. + .+.+|+ +.-|..|.... .|.|..- . + ..+..++ .+++....++
T Consensus 5 ~~i~~~~py~ng-~~HiGH~~~~~~~~D~~~R~~-r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 82 (556)
T PRK12268 5 ILITSAWPYANG-PLHLGHLAGSGLPADVFARYQ-RLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKED 82 (556)
T ss_pred EEEecCCCCCCC-CccccccccchhHHHHHHHHH-HhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344444555 5 7999998876 3 332444 44466666653 3444221 1 1 2455444 5566677778
Q ss_pred HHHcCCCCC
Q 015773 153 IIACGFDVT 161 (400)
Q Consensus 153 ilA~G~dp~ 161 (400)
+.++|++++
T Consensus 83 ~~~l~i~~d 91 (556)
T PRK12268 83 FKKLGISYD 91 (556)
T ss_pred HHHcCCcCC
Confidence 888999876
No 99
>PLN02959 aminoacyl-tRNA ligase
Probab=77.45 E-value=2.2 Score=49.45 Aligned_cols=53 Identities=19% Similarity=0.031 Sum_probs=29.4
Q ss_pred eeccccCchhHHHHHHHHHhh--hCCCCCe---eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPR--IGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r--~~~~kp~---~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..-|.||....- +.-+... +.-..|. .+.+.++. ++| +|||||.|| .|.+.+
T Consensus 674 l~~sG~Dii~~wl-~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G--~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 674 LRVSGKDLIQNHL-TFAIYNHTAIWAEEHWPRGFRCNGHLM-LNS--EKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred EEEecccHHHHHH-HHHHHHHHHhcCCCCCCceEEEccEEe-cCC--cCccccCCC-cCCHHH
Confidence 5577899866432 2222221 1112332 23344444 564 999999999 777654
No 100
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=76.54 E-value=5.3 Score=42.46 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEe-cCcccc--cc---c-CCCHHHHHH-HHHHHHHHHHHcCCCCC
Q 015773 94 PSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQL-TDDEKC--MW---K-NLSVEESQR-LARENAKDIIACGFDVT 161 (400)
Q Consensus 94 PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I-~D~~a~--~~---~-~~~~e~i~~-~~~~~~~~ilA~G~dp~ 161 (400)
|+| .+||||+.+++.. .+++ +..|..|..+. .|.+.. .. + ..++.++.+ +.....+++.++|++++
T Consensus 10 ~ng-~lHiGH~~~~~~aDvl~R~~-r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 10 ANG-KPHLGHAYTTILADVYARYK-RLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCC-CcccchhHHHHHHHHHHHHH-HhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 677 7999998876544 3444 44566666543 343311 11 1 256655544 44566667778888765
No 101
>PLN02381 valyl-tRNA synthetase
Probab=76.48 E-value=2.3 Score=49.26 Aligned_cols=53 Identities=23% Similarity=0.180 Sum_probs=33.8
Q ss_pred eeccccCchhHHHHHHHHHhh--hCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeec
Q 015773 235 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 291 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r--~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~ 291 (400)
++.-|.||... =.+|-++.. +....| .++.+.++..-+| .|||||.|| .|...
T Consensus 611 ~~~~G~Dii~~-W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~GN-vIdP~ 667 (1066)
T PLN02381 611 VLETGHDILFF-WVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSLGN-VIDPL 667 (1066)
T ss_pred eeeecchhhhh-HHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCCCC-CCCHH
Confidence 55689887643 233434333 333456 3455778887776 899999999 66543
No 102
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=76.42 E-value=1.1 Score=46.10 Aligned_cols=36 Identities=36% Similarity=0.616 Sum_probs=20.6
Q ss_pred CCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE-ecCccc
Q 015773 94 PSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ-LTDDEK 131 (400)
Q Consensus 94 PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~-I~D~~a 131 (400)
|.| .|||||+.+.+.. .+|++. -|..+.++ =+|.|.
T Consensus 10 ~Ng-~lHlGH~~~~l~ADv~aR~~r~-~G~~v~~~tGtDehG 49 (391)
T PF09334_consen 10 PNG-DLHLGHLYPYLAADVLARYLRL-RGHDVLFVTGTDEHG 49 (391)
T ss_dssp TSS-S-BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEE-SS
T ss_pred CCC-CCCCChhHHHHHHHHHHHHHhh-cccceeeEEecchhh
Confidence 677 7999998876544 244444 47666554 366663
No 103
>PLN02563 aminoacyl-tRNA ligase
Probab=75.60 E-value=1.7 Score=49.76 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=10.6
Q ss_pred cCCCCCCCCeeeec
Q 015773 278 KMSASDPNSAIYVT 291 (400)
Q Consensus 278 KMSKS~~nsaI~L~ 291 (400)
|||||.+| .|...
T Consensus 723 KMSKSKGN-vVdP~ 735 (963)
T PLN02563 723 KMSKSRGN-VVNPD 735 (963)
T ss_pred ccccccCC-cCCHH
Confidence 99999999 66543
No 104
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=75.02 E-value=17 Score=41.14 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=44.5
Q ss_pred CCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCc-cccc-c-----cCCCH-HHHHHHHHHHHH
Q 015773 83 GEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDD-EKCM-W-----KNLSV-EESQRLARENAK 151 (400)
Q Consensus 83 g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~-~a~~-~-----~~~~~-e~i~~~~~~~~~ 151 (400)
++++++..|+= ||| .|||||+...... ..++++.-|..|....|=+ |+.- . ...+. +-+.++..++.+
T Consensus 28 k~k~~v~~~pPy~nG-~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 28 KPKYYILDMFPYPSG-ALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCEEEEcCCCCCCC-ccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34577877743 235 7999998876543 2445555577766665433 3331 1 12333 334455566667
Q ss_pred HHHHcCCCC
Q 015773 152 DIIACGFDV 160 (400)
Q Consensus 152 ~ilA~G~dp 160 (400)
++.++|+..
T Consensus 107 ~~~~lG~~~ 115 (842)
T TIGR00396 107 QLQALGFSY 115 (842)
T ss_pred HHHHhCCcc
Confidence 777888654
No 105
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=74.99 E-value=2 Score=48.87 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=29.6
Q ss_pred eeccccCchhH-HHHHHHHHhh--hCC-CCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPY-FRMTRDVAPR--IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~-~~l~rdla~r--~~~-~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-.+ +-..+-. .. ++. +-| ..+.+.++.. + |+|||||.+| .|.+.+
T Consensus 533 ~~~~GkDii~~Hl~~~~~~-~~a~~~~~~~Pk~v~~hG~vl~-~--G~KMSKS~GN-vVdp~e 590 (897)
T PRK12300 533 WRHSGKDLIPNHLTFFIFN-HVAIFPEEKWPRGIVVNGFVLL-E--GKKMSKSKGN-VIPLRK 590 (897)
T ss_pred EEEeeeccCccHHHHHHHH-HHHhcCCCccCcEEEEcceEEE-C--CccccCcCCC-CCCHHH
Confidence 56789999653 2111111 11 111 223 3445566654 5 4899999999 776543
No 106
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=74.92 E-value=2.5 Score=43.33 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=41.5
Q ss_pred ceeEE-eecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHHH-HHHHHHHH
Q 015773 85 KFYLY-TGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQR-LARENAKD 152 (400)
Q Consensus 85 ~~~iy-tG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~~-~~~~~~~~ 152 (400)
.+.+| ||--|-+ .+||||+.+++.. .++|+. .|..|..+ ++|.. +.+.+ ..+++++.+ +.....++
T Consensus 9 ~v~~YvCGpTvY~-~~HIGh~r~~V~~Dvl~R~lr~-~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 9 TATMYVCGITPYD-ATHLGHAATYLAFDLVNRVWRD-AGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred eeEEEecCCCCCC-CCccchhHHHHHHHHHHHHHHH-cCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444 5555555 7999998775443 455554 46555444 44433 33332 366666544 45566777
Q ss_pred HHHcCC
Q 015773 153 IIACGF 158 (400)
Q Consensus 153 ilA~G~ 158 (400)
+.++|+
T Consensus 87 ~~~Lni 92 (384)
T PRK12418 87 MEALRV 92 (384)
T ss_pred HHHhCC
Confidence 778886
No 107
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=74.90 E-value=8.3 Score=40.65 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEe-cCcccc--ccc----CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015773 94 PSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQL-TDDEKC--MWK----NLSVEE-SQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 94 PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I-~D~~a~--~~~----~~~~e~-i~~~~~~~~~~ilA~G~dp~ 161 (400)
|+| .+||||+.+++.. .++++. .|..|..+. .|.+.. ..+ ..++.+ ++.+..+..+++.++|++++
T Consensus 12 ~~g-~~HiGh~~~~~~~Dv~~R~~r~-~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 12 PNG-KPHIGHAYTTLAADVLARFKRL-RGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCC-CcccchhHHHHHHHHHHHHHHh-cCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 346 8999998765443 344544 466665543 344421 111 245544 34455666677788898765
No 108
>PLN02882 aminoacyl-tRNA ligase
Probab=74.84 E-value=2.5 Score=49.41 Aligned_cols=51 Identities=22% Similarity=0.100 Sum_probs=30.6
Q ss_pred eeccccCchhHHHHHHHHHhh---hCCCCCe-eeecccccCCCCCCCcCCCCCCCCeee
Q 015773 235 LIPCAIDQDPYFRMTRDVAPR---IGYHKPA-LIESSFFPALQGETGKMSASDPNSAIY 289 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r---~~~~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~ 289 (400)
++.-|.||.... +.+-++.. +|.+.|. ++.+.++..=+| +|||||.+| +|.
T Consensus 570 ~i~eG~Dq~RgW-f~~ll~~s~~l~~~~pfk~VivhG~vlde~G--~KMSKSlGN-vId 624 (1159)
T PLN02882 570 FVAEGLDQTRGW-FYTLMVLSTALFDKPAFKNLICNGLVLAEDG--KKMSKSLKN-YPD 624 (1159)
T ss_pred EEEEecchhhhH-HHHHHHHHHHhcCCCCcceeEEccEEECCCC--CCcccCCCC-CCC
Confidence 678899997743 22222221 3444342 334666655554 899999999 654
No 109
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=74.67 E-value=2.7 Score=29.88 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.3
Q ss_pred CCccHHHHHHhhCCCcCChHHHHHHHHHhCCC
Q 015773 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP 57 (400)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~ 57 (400)
..||+++++. ||-+|||++.-.-+..+.|++
T Consensus 16 ~kvdWd~wvS-f~GrPltdevK~a~k~i~~~~ 46 (49)
T PF06543_consen 16 PKVDWDKWVS-FDGRPLTDEVKEAMKLIFGKR 46 (49)
T ss_pred cccchHHhee-eCCeeCCHHHHHHHHHHHhhh
Confidence 3699999998 999999999888888877763
No 110
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=74.47 E-value=11 Score=37.42 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=42.4
Q ss_pred CceeEE-eecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHH
Q 015773 84 EKFYLY-TGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAK 151 (400)
Q Consensus 84 ~~~~iy-tG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~ 151 (400)
+.+.+| ||--+-. .+||||+-+++.. .++|+. .|..|..+ |+|.. +.+.+ ..++.++. .+..+...
T Consensus 7 ~~v~~Y~CGPTVYd-~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGPTVYD-YAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEEBTTS---BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCC-CCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 455565 5655554 8999997666544 566766 57666444 89977 55543 36666654 45567777
Q ss_pred HHHHcCCCC
Q 015773 152 DIIACGFDV 160 (400)
Q Consensus 152 ~ilA~G~dp 160 (400)
++.++|+.+
T Consensus 85 dm~~Lnv~~ 93 (300)
T PF01406_consen 85 DMKALNVLP 93 (300)
T ss_dssp HHHHTT---
T ss_pred HHHHcCCCC
Confidence 777888765
No 111
>PLN02286 arginine-tRNA ligase
Probab=74.42 E-value=5.2 Score=43.26 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=44.6
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCC------eeeecccccCCCCCCCcCCCCCCCCeeeecCcHHH
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 296 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp------~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~ 296 (400)
++--+|.||..|+.-...+++.+|+.++ .++..-++-++.| +||||-.|+ +|+|+|=-++
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~G~-~v~L~dllde 395 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRSGE-VVRLVDLLDE 395 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCCCC-eeEHHHHHHH
Confidence 4447999999999999999999997522 2233456755665 799988777 9999884443
No 112
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=74.13 E-value=2.5 Score=48.30 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=29.8
Q ss_pred eeccccCchhH-HHHH--HHHHhhhCC-CCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPY-FRMT--RDVAPRIGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~-~~l~--rdla~r~~~-~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-++ .-.. ...|- ++. +-| ..+++.++.. + |+|||||.+| .|.+.+
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a~-~~~~~~Pk~i~~~G~vl~-~--G~KMSKSlGN-vI~p~d 633 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVAI-FPEKFWPRGIVVNGYVML-E--GKKMSKSKGN-VLTLEQ 633 (938)
T ss_pred EEEEeeccccchHHHHHHHHHHc-CCccccCcEEEEeceEEe-C--CccccCcCCC-CCCHHH
Confidence 56789999762 2221 11111 111 123 3444555553 5 4899999999 777655
No 113
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=73.27 E-value=3.1 Score=47.92 Aligned_cols=51 Identities=25% Similarity=0.218 Sum_probs=32.5
Q ss_pred eeccccCchhHHHHHHHHHhhh--CCCCCe--eeecccccCCCCCCCcCCCCCCCCeee
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIY 289 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~--~~~kp~--~l~~~~lp~L~G~~~KMSKS~~nsaI~ 289 (400)
+...|.||-.+ =.+|-++..+ ....|. ++.+.++..-+| +|||||.|| .|.
T Consensus 541 ~~~~G~Dii~~-W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSlGN-vId 595 (995)
T PTZ00419 541 LLETGSDILFF-WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSKGN-VID 595 (995)
T ss_pred EEEechhHHhH-HHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCCCC-cCC
Confidence 56788887652 2334444433 224563 455777777675 899999999 664
No 114
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=71.47 E-value=1.6 Score=43.16 Aligned_cols=51 Identities=24% Similarity=0.154 Sum_probs=22.0
Q ss_pred ccccCc-hhHHHHHHHHHhhhCCCCCee---eecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 237 PCAIDQ-DPYFRMTRDVAPRIGYHKPAL---IESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 237 p~G~DQ-d~~~~l~rdla~r~~~~kp~~---l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
-+|+|- -||.+=-+-.++-... +|.+ +|+-+|. +. |+|||||.+| .|.+.|
T Consensus 211 ~GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~-~~--g~KMSKSlgN-~~~i~d 265 (300)
T PF01406_consen 211 GGGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLN-VD--GEKMSKSLGN-FITIRD 265 (300)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EE-ET--TCE--TTTT----BHHH
T ss_pred ccccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHh-hc--CccccccCCC-EEEHHH
Confidence 355552 2555444334443322 3432 3444443 34 4899999998 777655
No 115
>PLN02224 methionine-tRNA ligase
Probab=70.90 E-value=3.4 Score=44.99 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=32.1
Q ss_pred eeccccCchhHHHHH-HHHHhhhCCCCCeeee-cccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMT-RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~-rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+-.+|.|-.++.-+. --+.-..|.+-|..+. +-++ .+.| +|||||.+| +|+..+
T Consensus 324 v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~eG--~KMSKS~GN-~i~p~e 379 (616)
T PLN02224 324 LHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKDG--MKMGKSLGN-TLEPFE 379 (616)
T ss_pred eEEEeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecCC--ccccccCCc-cCCHHH
Confidence 346788877754332 1111124555564443 4444 4565 899999999 887765
No 116
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=70.41 E-value=3.6 Score=42.56 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=41.0
Q ss_pred EEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHHHHHHc
Q 015773 88 LYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAKDIIAC 156 (400)
Q Consensus 88 iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~~ilA~ 156 (400)
..||-=|-+ .+||||+.+++.. .+|++. .|..|..+ ++|.. +.+.+ ..+++++. ++..+..+++-++
T Consensus 40 YvCGpTvY~-~~HIGhart~V~~Dvl~R~lr~-~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~L 117 (411)
T TIGR03447 40 YVCGITPYD-ATHLGHAATYLTFDLVNRVWRD-AGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEAL 117 (411)
T ss_pred EEeCCccCC-CcccccchHHHHHHHHHHHHHh-cCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 446666666 7999997765443 355554 46666554 44433 33332 36665544 4455666777777
Q ss_pred CCC
Q 015773 157 GFD 159 (400)
Q Consensus 157 G~d 159 (400)
|+.
T Consensus 118 ni~ 120 (411)
T TIGR03447 118 RVL 120 (411)
T ss_pred CCC
Confidence 754
No 117
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=70.35 E-value=8.3 Score=42.19 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=40.8
Q ss_pred ceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEE-ecCccccc--cc----CCCHHHHH-HHHHHHHHHH
Q 015773 85 KFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQ-LTDDEKCM--WK----NLSVEESQ-RLARENAKDI 153 (400)
Q Consensus 85 ~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~-I~D~~a~~--~~----~~~~e~i~-~~~~~~~~~i 153 (400)
+++|-|.+= |+| .+||||+.+.+.. ..++++.-|..+..+ =+|.|..- .+ ..++.++. .+.....+++
T Consensus 5 ~~~it~~~py~ng-~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l 83 (648)
T PRK12267 5 TFYITTPIYYPNG-KPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELW 83 (648)
T ss_pred CEEEeeCCCCCCC-CcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444444432 446 7999998765544 133334446555554 35555321 11 24554443 3445556667
Q ss_pred HHcCCCCC
Q 015773 154 IACGFDVT 161 (400)
Q Consensus 154 lA~G~dp~ 161 (400)
.++|++.+
T Consensus 84 ~~lgI~~D 91 (648)
T PRK12267 84 KKLDISYD 91 (648)
T ss_pred HHcCCCCC
Confidence 77888664
No 118
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.22 E-value=6.5 Score=44.10 Aligned_cols=96 Identities=20% Similarity=0.187 Sum_probs=54.1
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcccccc-
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDEKCMW- 134 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~a~~~- 134 (400)
....+-++|....|.+. .+++++..-| =||| .||+||.-..... ..++++.-|-.|..-+| +|++=.
T Consensus 16 ~~W~e~~~Fe~~~d~~~-------~~Kfyvl~mfPYpSG-~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlP 86 (814)
T COG0495 16 KRWEEAKVFEADEDSDK-------PEKFYVLVMFPYPSG-ALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLP 86 (814)
T ss_pred HHHHhcCCcccCCCCCC-------CCceEEEeCCCCCCC-CcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCch
Confidence 45566666655444221 1468887777 4787 7999997665544 24455555666666555 555420
Q ss_pred ------c-CCCH-HHHHHHHHHHHHHHHHcCCCCCce
Q 015773 135 ------K-NLSV-EESQRLARENAKDIIACGFDVTKT 163 (400)
Q Consensus 135 ------~-~~~~-e~i~~~~~~~~~~ilA~G~dp~kt 163 (400)
+ ..++ .=+..|.....+++.++|+.-+-.
T Consensus 87 ae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~ 123 (814)
T COG0495 87 AENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWR 123 (814)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccc
Confidence 0 1122 223344455556777888865533
No 119
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=69.02 E-value=4.7 Score=47.26 Aligned_cols=50 Identities=26% Similarity=0.192 Sum_probs=30.9
Q ss_pred eeccccCchhHHHHH---HHHHhhhCCCCC--eeeecccccCCCCCCCcCCCCCCCCeee
Q 015773 235 LIPCAIDQDPYFRMT---RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIY 289 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~---rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~ 289 (400)
++.=|.||....-.+ .-++- +| ..| .++.+.++..-+| +|||||.+| .|.
T Consensus 676 ~i~eG~Dq~rgWf~s~l~~s~~l-~~-~~PfK~VlvHG~Vld~dG--~KMSKSlGN-vID 730 (1205)
T PTZ00427 676 FIAEGLDQTRGWFYTLLVISTLL-FD-KAPFKNLICNGLVLASDG--KKMSKRLKN-YPD 730 (1205)
T ss_pred EEEEecchhccHHHHHHHHHHHh-cC-CCCcceeEEccEEEcCCC--CCcccCCCC-CCC
Confidence 778899998743222 22221 23 244 3445667766665 899999999 553
No 120
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=68.14 E-value=9.3 Score=42.18 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=19.9
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015773 348 EYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 381 (400)
Q Consensus 348 ~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~ 381 (400)
..++|. ...-.-+.++.+++..++--.+.++.-
T Consensus 777 ~LrtGp-~~~FaDrvf~nemN~~i~~t~~aye~~ 809 (1080)
T KOG0437|consen 777 SLRTGP-ASTFADRVFENEMNALIAKTERAYEDT 809 (1080)
T ss_pred hhccCc-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344552 222455777788888877766666543
No 121
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=67.85 E-value=2.5 Score=47.82 Aligned_cols=14 Identities=43% Similarity=0.401 Sum_probs=11.4
Q ss_pred cCCCCCCCCeeeecC
Q 015773 278 KMSASDPNSAIYVTD 292 (400)
Q Consensus 278 KMSKS~~nsaI~L~D 292 (400)
|||||.+| .|.+.|
T Consensus 604 KMSKS~GN-~v~p~~ 617 (842)
T TIGR00396 604 KMSKSKGN-GIDPQE 617 (842)
T ss_pred hhhhcCCC-cCCHHH
Confidence 99999999 776544
No 122
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=66.94 E-value=19 Score=38.14 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=43.9
Q ss_pred CceeEE-eecCCCCCCcchhhhHHHH---HHHHHHHhcCCCcEEEE--ecCc----------c-ccccc----CCCHHH-
Q 015773 84 EKFYLY-TGRGPSSEALHLGHLVPFM---FTNRYLQDAFKVPLVIQ--LTDD----------E-KCMWK----NLSVEE- 141 (400)
Q Consensus 84 ~~~~iy-tG~~PTg~~lHlGh~i~~~---~~~~~lQ~~~~~~v~I~--I~D~----------~-a~~~~----~~~~e~- 141 (400)
+.+.+| ||--+-+ .+||||+.+++ .+.+||+- .|..|..+ |+|. . +.+.+ ..++.+
T Consensus 22 ~~v~mYvCGpTvy~-~~HiGhar~~v~~Dvl~R~l~~-~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~ 99 (490)
T PRK14536 22 GHVRLYGCGPTVYN-YAHIGNLRTYVFQDTLRRTLHF-LGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEI 99 (490)
T ss_pred CceEEEeeCCccCC-CcccchhHHHHHHHHHHHHHHh-cCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHH
Confidence 345555 4544445 79999976644 34455654 56555443 6776 2 22221 255544
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 015773 142 SQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 142 i~~~~~~~~~~ilA~G~dp~ 161 (400)
+.++.....+++.++|+.+.
T Consensus 100 a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 34455677778888888653
No 123
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=66.76 E-value=22 Score=36.59 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=17.3
Q ss_pred ecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 265 ESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 265 ~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
.+..+...+| +|||||.+| .|.+.+
T Consensus 250 ~H~g~l~~~G--~KMSKSlGN-~i~~~e 274 (384)
T PRK12418 250 VHAGMIGLDG--EKMSKSRGN-LVFVSR 274 (384)
T ss_pred EECCEECCCC--CcccCcCCC-cCCHHH
Confidence 3444445565 899999999 776643
No 124
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=66.05 E-value=20 Score=35.47 Aligned_cols=66 Identities=17% Similarity=0.120 Sum_probs=37.2
Q ss_pred CCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEe-cCcccc--ccc----CCCHHHHHH-HHHHHHHHHHHcCCCCC
Q 015773 94 PSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQL-TDDEKC--MWK----NLSVEESQR-LARENAKDIIACGFDVT 161 (400)
Q Consensus 94 PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I-~D~~a~--~~~----~~~~e~i~~-~~~~~~~~ilA~G~dp~ 161 (400)
|+| .+||||+.+.+.. .+++ +..|..|..+. .|.+.. ..+ ..++.++.+ +...+.+++.++|++++
T Consensus 11 ~ng-~~HlGH~~~~~~~Dv~~R~~-r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 11 VNG-VPHLGHLYGTVLADVFARYQ-RLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCC-CcchhhHHHHHHHHHHHHHH-HhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 346 7999998876443 2444 44465555442 344421 111 256655544 34555667778898765
No 125
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.44 E-value=56 Score=36.93 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=28.1
Q ss_pred ccccCchhHHHH-HH---HHHhhhCC---CCCe--eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 237 PCAIDQDPYFRM-TR---DVAPRIGY---HKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 237 p~G~DQd~~~~l-~r---dla~r~~~---~kp~--~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
.+|+|+-+..-+ +| ....-.|+ .+|. ++..-++.+-. |+|||||.+| .|-+++
T Consensus 531 igG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~--g~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 531 IGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEE--GEKMSKSKGN-VVDPEE 592 (814)
T ss_pred ecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecC--CCccccccCC-CCCHHH
Confidence 577776664333 22 22222332 3342 23344555444 4899999999 665544
No 126
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=64.69 E-value=16 Score=35.91 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=20.0
Q ss_pred CCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE-ecCccc
Q 015773 94 PSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ-LTDDEK 131 (400)
Q Consensus 94 PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~-I~D~~a 131 (400)
|+| .+||||+.+.+.. .+++.-. |..|..+ =.|.+.
T Consensus 11 ~~g-~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g 50 (312)
T cd00668 11 ANG-SLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHG 50 (312)
T ss_pred CCC-CcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCC
Confidence 455 7999998875433 2444433 5444333 245543
No 127
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=64.65 E-value=3.5 Score=41.71 Aligned_cols=62 Identities=21% Similarity=0.229 Sum_probs=39.6
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCC--Ceeeec--ccccCCCCCCCcCCCCCCCCeeeecCcHHHH
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHK--PALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAI 297 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~k--p~~l~~--~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i 297 (400)
++-.+|.||..|+.-...+++.+|+.. ....|. .++.+-+|. .|||+-.++ .|.|+|=-++.
T Consensus 241 ~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk-~~mstR~G~-~i~l~dllde~ 306 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGK-VKMSTRKGN-VITLDDLLDEA 306 (354)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBE-ESS-TTTTS-STBHHHHHHHH
T ss_pred EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCC-ccccCCCCC-ceEHHHHHHHH
Confidence 444799999999999999999999721 122222 233233431 279999888 99997743333
No 128
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=64.64 E-value=21 Score=39.25 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=44.8
Q ss_pred CceeEEeecCCC-CCCcchhhhH---HHHHHHHHHHhcCCCcEEEE--ecCcc-ccccc----CCC-HHH-HHHHHHHHH
Q 015773 84 EKFYLYTGRGPS-SEALHLGHLV---PFMFTNRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLS-VEE-SQRLARENA 150 (400)
Q Consensus 84 ~~~~iytG~~PT-g~~lHlGh~i---~~~~~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~-~e~-i~~~~~~~~ 150 (400)
+.+.+|+ -+|| -+.+||||+- .+..+.++|++.+|..|..+ |+|.- +.+.+ .++ +.+ ++.+..+..
T Consensus 59 ~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 59 RQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444443 2355 2489999954 45555577775667555544 66654 44433 355 544 444556777
Q ss_pred HHHHHcCCCC
Q 015773 151 KDIIACGFDV 160 (400)
Q Consensus 151 ~~ilA~G~dp 160 (400)
.++-++|+.+
T Consensus 138 ~d~~~Lni~~ 147 (651)
T PTZ00399 138 EDMKALNVRP 147 (651)
T ss_pred HHHHHcCCCC
Confidence 7777888754
No 129
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.33 E-value=8.2 Score=43.50 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=32.8
Q ss_pred eeccccCchhHHHHHHHHHhhh--CCCCCe--eeecccccCCCCCCCcCCCCCCCCeee
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIY 289 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~--~~~kp~--~l~~~~lp~L~G~~~KMSKS~~nsaI~ 289 (400)
+.+.|-| -=++=.+|-+..-+ ....|. ++.+.++-.-+| .|||||.|| .|-
T Consensus 481 llvtG~D-IIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G--~KMSKS~GN-vID 535 (877)
T COG0525 481 LLVTGHD-IIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQG--RKMSKSKGN-VID 535 (877)
T ss_pred cccccch-hhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCC--CCCcccCCC-cCC
Confidence 5688988 55555566666553 334563 223556666665 999999999 664
No 130
>PLN02610 probable methionyl-tRNA synthetase
Probab=62.91 E-value=5.3 Score=44.91 Aligned_cols=54 Identities=17% Similarity=0.277 Sum_probs=32.2
Q ss_pred eeccccCchhHHHHH---HHHHhhhCCCCCeeee-cccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~---rdla~r~~~~kp~~l~-~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+-.+|.|=-.++-+. --++....++.|..+. +-++ .+.| +|||||.+| .||..+
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~eG--~KMSKS~GN-vV~p~~ 361 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYEG--GKFSKSKGV-GVFGND 361 (801)
T ss_pred EEEEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecCC--ceecCcCCc-ccCHHH
Confidence 347888866665443 2222222234555444 3343 3454 899999999 888765
No 131
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.67 E-value=6.6 Score=42.28 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=30.3
Q ss_pred ccccCchhHHHHH-HHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 237 PCAIDQDPYFRMT-RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 237 p~G~DQd~~~~l~-rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
.+|.|=-.++-+- =-+.--.+.+.|..+.+.-.-.+.| +|||||.+| +||..+
T Consensus 293 fIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G--~KmSKSrG~-~V~~~~ 346 (558)
T COG0143 293 FIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEG--QKMSKSRGN-VVDPDE 346 (558)
T ss_pred EeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECC--ccccccCCc-EEeHHH
Confidence 5777755554443 1111223444565554333334554 899999999 998765
No 132
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=61.87 E-value=20 Score=35.91 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=24.1
Q ss_pred ceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEe-cCcc
Q 015773 85 KFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQL-TDDE 130 (400)
Q Consensus 85 ~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I-~D~~ 130 (400)
+|++.+|-= |+| .+||||+.+.+.. ..++++..|..|..+. .|.|
T Consensus 2 ~f~i~~~pP~vnG-~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~h 50 (338)
T cd00818 2 EFVFHDGPPYANG-LPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCH 50 (338)
T ss_pred CeEEecCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCC
Confidence 344544432 345 7999998875443 1333444466554443 4443
No 133
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=60.51 E-value=5 Score=45.16 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=27.1
Q ss_pred eeccccCch-hHHHHHHHHHh---hhC---CCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQD-PYFRMTRDVAP---RIG---YHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd-~~~~l~rdla~---r~~---~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||. -|+-.+|-... ..+ ...| .++++.++ |||||.+| .|...|
T Consensus 526 ly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------KMSKS~GN-~i~p~~ 583 (805)
T PRK00390 526 QYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------KMSKSKGN-VVDPDD 583 (805)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE--------EeCCCCCC-CCCHHH
Confidence 668899984 33333332221 112 2345 23445555 99999999 665543
No 134
>PLN02946 cysteine-tRNA ligase
Probab=60.42 E-value=26 Score=37.76 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=43.2
Q ss_pred CceeEE-eecCCCCCCcchhhhHHHHH---HHHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHH
Q 015773 84 EKFYLY-TGRGPSSEALHLGHLVPFMF---TNRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAK 151 (400)
Q Consensus 84 ~~~~iy-tG~~PTg~~lHlGh~i~~~~---~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~ 151 (400)
+.+.+| ||--+-+ .+||||+.+++. +.+||.- .|..|..+ ++|.- +.+.+ ..++.++. ++..+..+
T Consensus 79 ~~v~~Y~CGpTvYd-~~HIGhaR~~V~~Dvl~R~Lr~-~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~ 156 (557)
T PLN02946 79 GKVGMYVCGVTAYD-LSHIGHARVYVTFDVLYRYLKH-LGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLS 156 (557)
T ss_pred CceeEEEeCCccCC-CCccccchhhHHHHHHHHHHHh-cCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345555 4433335 799999766544 3455654 56655544 55544 44332 36665544 45566777
Q ss_pred HHHHcCCC
Q 015773 152 DIIACGFD 159 (400)
Q Consensus 152 ~ilA~G~d 159 (400)
++.++|+.
T Consensus 157 d~~~LnI~ 164 (557)
T PLN02946 157 DMAYLHCL 164 (557)
T ss_pred HHHHCCCC
Confidence 88888875
No 135
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=60.04 E-value=27 Score=35.67 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=25.1
Q ss_pred eeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEe-cCcc
Q 015773 86 FYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQL-TDDE 130 (400)
Q Consensus 86 ~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I-~D~~ 130 (400)
+++.+|.= |+| .|||||+.+.+.. ..++++.-|..|.... .|.|
T Consensus 3 f~i~~~pPy~nG-~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 3 FVIDTPPPNVTG-SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred EEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 44444432 455 7999998876544 2334555566665544 4444
No 136
>PLN02610 probable methionyl-tRNA synthetase
Probab=59.77 E-value=24 Score=39.77 Aligned_cols=77 Identities=6% Similarity=-0.032 Sum_probs=44.2
Q ss_pred CceeEEeecC-CCCCCcchhhhHHH-HH--HHHHHHhcCCCcEEEEecC-cccccc-c-----CCCHHHH-HHHHHHHHH
Q 015773 84 EKFYLYTGRG-PSSEALHLGHLVPF-MF--TNRYLQDAFKVPLVIQLTD-DEKCMW-K-----NLSVEES-QRLARENAK 151 (400)
Q Consensus 84 ~~~~iytG~~-PTg~~lHlGh~i~~-~~--~~~~lQ~~~~~~v~I~I~D-~~a~~~-~-----~~~~e~i-~~~~~~~~~ 151 (400)
++++|-|.+= |+| .|||||+.+. +. ++.++++.-|..|+++.|. .|..-. . ..++.++ .++......
T Consensus 17 ~~~~ITt~~pY~Ng-~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 17 RNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCEEEeCCCCCCCC-CcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566655553 445 7999999852 32 1255566667777776554 444321 1 2555444 344445555
Q ss_pred HHHHcCCCCC
Q 015773 152 DIIACGFDVT 161 (400)
Q Consensus 152 ~ilA~G~dp~ 161 (400)
.+.++|++.+
T Consensus 96 ~~~~l~i~~D 105 (801)
T PLN02610 96 VYDWFDISFD 105 (801)
T ss_pred HHHHcCCccc
Confidence 6677888765
No 137
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=59.48 E-value=27 Score=36.29 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=17.5
Q ss_pred eecccccCCCCCCCcCCCCCCCCeeeec
Q 015773 264 IESSFFPALQGETGKMSASDPNSAIYVT 291 (400)
Q Consensus 264 l~~~~lp~L~G~~~KMSKS~~nsaI~L~ 291 (400)
..+..+...+| +|||||.+| .|.+.
T Consensus 276 w~H~g~l~~~G--~KMSKSlGN-~i~~~ 300 (411)
T TIGR03447 276 YVHAGMIGLDG--EKMSKSLGN-LVFVS 300 (411)
T ss_pred EEECCEECcCC--CCccCcCCC-CCCHH
Confidence 34444556665 899999999 77664
No 138
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=58.97 E-value=18 Score=35.74 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=35.5
Q ss_pred CCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE-ecCcccc-cc---c--CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015773 94 PSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ-LTDDEKC-MW---K--NLSVEE-SQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 94 PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~-I~D~~a~-~~---~--~~~~e~-i~~~~~~~~~~ilA~G~dp~ 161 (400)
|+| .+||||+.+.+.. .+++.. -|..|..+ =.|.+.. +. + ..+..+ +.++..+..+++.++|+.++
T Consensus 11 ~ng-~~HiGH~~~~v~~Dv~~R~lr~-~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSG-ALHVGHVRTYTIGDIIARYKRM-QGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCC-CccccchHHHHHHHHHHHHHHH-cCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 455 7999998876544 344443 35544333 2444421 11 1 234443 33444566667778888654
No 139
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=58.78 E-value=5.7 Score=43.59 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=28.6
Q ss_pred eccccCch--hHH--HHHHHHHhhhCC-CC-CeeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 236 IPCAIDQD--PYF--RMTRDVAPRIGY-HK-PALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 236 vp~G~DQd--~~~--~l~rdla~r~~~-~k-p~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
--+|+| . ||. +++.--|- +|. +- -..+|+.+| .+.| .|||||.+| .|.+.|
T Consensus 272 h~gG~D-L~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~L-~i~G--~KMSKSLGN-fItp~d 328 (651)
T PTZ00399 272 HSGGID-LKFPHHDNELAQSEAY-FDKHQWVNYFLHSGHL-HIKG--LKMSKSLKN-FITIRQ 328 (651)
T ss_pred eccCCC-CCCCcchhHHHHHHHh-hCCCCCCcEEEEEEEE-Eecc--chhhhcCCC-cccHHH
Confidence 357777 5 663 34422222 232 11 234454553 3554 899999999 777765
No 140
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.61 E-value=33 Score=37.08 Aligned_cols=98 Identities=24% Similarity=0.310 Sum_probs=50.6
Q ss_pred EEeec--CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH-cCCCCCceE
Q 015773 88 LYTGR--GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA-CGFDVTKTF 164 (400)
Q Consensus 88 iytG~--~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA-~G~dp~kt~ 164 (400)
++|-| +|-| .|||||.-.+....-|- ++.|...++- =|++ ++|.=++-.-+-|+++.+ +|+.|=|++
T Consensus 249 V~TRFPPEPNG-~LHIGHaKAInvNFgyA-k~~~G~cyLR-fDDT-------NPEkEee~yf~sI~e~V~WLG~~P~kvT 318 (764)
T KOG1148|consen 249 VVTRFPPEPNG-ILHIGHAKAINVNFGYA-KAHGGVCYLR-FDDT-------NPEKEEEEYFESIKEMVAWLGFEPYKVT 318 (764)
T ss_pred eEEeCCCCCCc-eeeecchhheeechhhh-hhhCCeEEEe-cCCC-------CcchhhHHHHHHHHHHHHHhCCCceeee
Confidence 66766 5667 89999987766653333 3334333442 2432 222222222233444454 599986543
Q ss_pred EEecccccccchHHHHHHHH-------hhcCHHHHHHhhCC
Q 015773 165 IFSDFDYVGGAFYKNMVKVA-------KCVTYNKVVGIFGF 198 (400)
Q Consensus 165 i~~~s~~~~~~~~~~~~~l~-------r~~t~~~~~~~~g~ 198 (400)
.+||++. .+|.-...|- .|.|..+++..-|+
T Consensus 319 --ysSDyFd-qLy~~av~LIrkG~AYVcHqt~eEik~~rg~ 356 (764)
T KOG1148|consen 319 --YSSDYFD-QLYELAVELIRKGKAYVCHQTAEEIKERRGF 356 (764)
T ss_pred --cchhHHH-HHHHHHHHHHhcCceeEEeccHHHHHhhcCC
Confidence 5666663 3333322222 35566677654443
No 141
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=57.03 E-value=33 Score=36.38 Aligned_cols=75 Identities=21% Similarity=0.276 Sum_probs=42.8
Q ss_pred ceeEEeecCCC-CCCcchhhhHHHHH---HHHHHHhcCCCcEEEE--ecCc----------c-ccccc----CCCHHHH-
Q 015773 85 KFYLYTGRGPS-SEALHLGHLVPFMF---TNRYLQDAFKVPLVIQ--LTDD----------E-KCMWK----NLSVEES- 142 (400)
Q Consensus 85 ~~~iytG~~PT-g~~lHlGh~i~~~~---~~~~lQ~~~~~~v~I~--I~D~----------~-a~~~~----~~~~e~i- 142 (400)
.+.+|+ -+|| -+.+||||+.+++. +.+||+. .|..|..+ |+|. . +.+.+ ..++.++
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~-~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRL-LKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHH-cCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 345553 3455 24799999766544 3456654 45555442 6776 2 33322 2565444
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 015773 143 QRLARENAKDIIACGFDVT 161 (400)
Q Consensus 143 ~~~~~~~~~~ilA~G~dp~ 161 (400)
.++.....+++-++|+.+.
T Consensus 99 ~~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4455666777778887643
No 142
>PLN02946 cysteine-tRNA ligase
Probab=55.26 E-value=4.6 Score=43.44 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=18.5
Q ss_pred eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 263 LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 263 ~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
-+|+-+|. ++| +|||||.+| .|.+.|
T Consensus 311 W~H~G~v~-~~G--~KMSKSlGN-~itl~d 336 (557)
T PLN02946 311 WIHNGFVT-VDS--EKMSKSLGN-FFTIRQ 336 (557)
T ss_pred eeEeeEEE-eCC--CCcCCcCCC-cCCHHH
Confidence 35666666 665 899999998 666543
No 143
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.07 E-value=27 Score=37.00 Aligned_cols=51 Identities=33% Similarity=0.592 Sum_probs=36.5
Q ss_pred hCCceeEEeecCCC-CCCcchhh---hHHHHHHHHHHHhcCCCcEEEE--ecCcc-ccc
Q 015773 82 KGEKFYLYTGRGPS-SEALHLGH---LVPFMFTNRYLQDAFKVPLVIQ--LTDDE-KCM 133 (400)
Q Consensus 82 ~g~~~~iytG~~PT-g~~lHlGh---~i~~~~~~~~lQ~~~~~~v~I~--I~D~~-a~~ 133 (400)
.++.+..|+ -+|| -++-|+|| |+.+..+.+.|++.+|..|..+ |+|.. +.+
T Consensus 52 ~~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII 109 (586)
T KOG2007|consen 52 NGNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKII 109 (586)
T ss_pred CCCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHH
Confidence 345566665 3687 36789999 6777777778999999887665 77765 444
No 144
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=54.60 E-value=42 Score=37.09 Aligned_cols=76 Identities=25% Similarity=0.335 Sum_probs=44.6
Q ss_pred CceeEE-eecCCCCCCcchhhhHHHHH---HHHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHH-HHHHHHHH
Q 015773 84 EKFYLY-TGRGPSSEALHLGHLVPFMF---TNRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQ-RLARENAK 151 (400)
Q Consensus 84 ~~~~iy-tG~~PTg~~lHlGh~i~~~~---~~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~-~~~~~~~~ 151 (400)
+.+.+| ||--+-. .+||||+.+++. +.++|+. .|..|..+ ++|.- +.+.+ ..++.++. ++..+..+
T Consensus 247 ~~V~mYvCGPTVYd-~~HIGHaRt~V~~DVL~R~Lr~-~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~ 324 (699)
T PRK14535 247 ENVRMYVCGMTVYD-YCHLGHARVMVVFDMIARWLRE-CGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHE 324 (699)
T ss_pred CceEEEecCCcCCC-CCcccchhHHHHHHHHHHHHHH-cCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345555 4533334 899999766544 3455554 46665554 55544 44332 36665544 45566777
Q ss_pred HHHHcCCCCC
Q 015773 152 DIIACGFDVT 161 (400)
Q Consensus 152 ~ilA~G~dp~ 161 (400)
++.++|+.+.
T Consensus 325 d~~~LnI~~p 334 (699)
T PRK14535 325 DADALGVLRP 334 (699)
T ss_pred HHHHcCCCCC
Confidence 7888888654
No 145
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.02 E-value=30 Score=38.00 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=37.4
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHH---HHHHHHHHhcCCCcEEEEec
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPF---MFTNRYLQDAFKVPLVIQLT 127 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~---~~~~~~lQ~~~~~~v~I~I~ 127 (400)
+....+|.+|.. + .-.++++ ||++-| -||| .||+||.... ..+ .++|+.-|-.|+=-+|
T Consensus 40 ~~~~~~~~~~~~-~------~d~sk~K-YiLsMFPYPSG-~LHiGHvRVYTIsD~l-aRf~rm~GynVihPMG 102 (876)
T KOG0435|consen 40 KQYLKDGFPFSK-D------SDKSKKK-YILSMFPYPSG-ALHIGHVRVYTISDIL-ARFYRMKGYNVIHPMG 102 (876)
T ss_pred HHHHhcCCcccc-c------cccCCCc-eEEEecCCCCC-cccccceEEEEehHHH-HHHHHhcCceeecCCc
Confidence 456677877764 1 1134444 999988 4887 7999996543 344 6777765655544444
No 146
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=53.36 E-value=5.4 Score=43.77 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=22.7
Q ss_pred eeecccccCCCCCCCcCCCCCCCCeeeecC-----cHHHHHHHh
Q 015773 263 LIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKI 301 (400)
Q Consensus 263 ~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D-----~~~~i~~KI 301 (400)
-+|+-++. +.| +|||||.+| .|.+.| +|+.++==+
T Consensus 496 WmHnG~V~-vdG--eKMSKSLGN-~it~~dlLe~ygpdalRl~l 535 (699)
T PRK14535 496 WLHNGFIR-VDG--EKMSKSLGN-FFTIREVLKQYDPEVVRFFI 535 (699)
T ss_pred EEECCeEe-eCC--CccCCCCCC-cCCHHHHHHhCCHHHHHHHH
Confidence 34566665 665 899999998 666544 455554433
No 147
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=52.27 E-value=9.4 Score=40.48 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=17.0
Q ss_pred cccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 266 SSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 266 ~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+.-+..+.| +|||||.+| .|.+.|
T Consensus 269 h~g~l~~~g--~KMSKSlGN-~itl~d 292 (490)
T PRK14536 269 HHEFLLMNK--GKMSKSAGQ-FLTLSS 292 (490)
T ss_pred EcCEEeecC--ccccccCCC-cccHHH
Confidence 333334565 899999998 888754
No 148
>PLN02563 aminoacyl-tRNA ligase
Probab=50.97 E-value=42 Score=38.70 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=44.1
Q ss_pred CCceeEEeecCCCCCC-cchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc-ccc-cc-----CCCH-HHHHHHHHHHHH
Q 015773 83 GEKFYLYTGRGPSSEA-LHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE-KCM-WK-----NLSV-EESQRLARENAK 151 (400)
Q Consensus 83 g~~~~iytG~~PTg~~-lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~-a~~-~~-----~~~~-e~i~~~~~~~~~ 151 (400)
+.++++.+|+=...+. ||+||+...... ..++++.-|..|...+|=++ +.- .. ..+. +-+.++...+.+
T Consensus 109 k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~ 188 (963)
T PLN02563 109 KPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRS 188 (963)
T ss_pred CCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHH
Confidence 4568888898322334 999998875443 24455655777666655443 331 11 1222 233445556666
Q ss_pred HHHHcCCCC
Q 015773 152 DIIACGFDV 160 (400)
Q Consensus 152 ~ilA~G~dp 160 (400)
++..+|+.-
T Consensus 189 q~~~lG~s~ 197 (963)
T PLN02563 189 QLKSLGFSY 197 (963)
T ss_pred HHHHhCcEe
Confidence 777788643
No 149
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=48.85 E-value=1.9e+02 Score=28.48 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=34.7
Q ss_pred eccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCc
Q 015773 236 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293 (400)
Q Consensus 236 vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~ 293 (400)
+.+=.| -|-+.+.|.+.+.+|++ ..++..+++..-+| =-||+= .+||+..
T Consensus 147 yFGeKD-~QQl~vIr~mV~DL~~~-VeIv~vptVRe~DG--LA~SSR----N~YLs~e 196 (285)
T COG0414 147 YFGEKD-YQQLAVIRRMVADLNLP-VEIVGVPTVREEDG--LALSSR----NVYLSAE 196 (285)
T ss_pred eeccch-HHHHHHHHHHHHHcCCC-eEEEecceeEcCCc--cchhhc----cccCCHH
Confidence 345556 78888889999999973 34445788888886 456653 4677663
No 150
>PLN02943 aminoacyl-tRNA ligase
Probab=48.80 E-value=67 Score=37.08 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEee-cCCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG-~~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~ 130 (400)
.+.+.|+|....+ .++++|.+.+| =-+|| .||+||.+..... ..++++.-|..|....|=+|
T Consensus 72 ~W~~~~~f~~~~~--------~~~~~f~i~~pPP~~tG-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 72 WWESQGYFKPNFD--------RGGDPFVIPMPPPNVTG-SLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred HHHHCCCcccCcc--------cCCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 5566777765432 23456888777 45687 7999998865443 13344444666655544443
No 151
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=48.21 E-value=60 Score=35.28 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=26.2
Q ss_pred HhCCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEe
Q 015773 81 EKGEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQL 126 (400)
Q Consensus 81 ~~g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I 126 (400)
.++++|++..|.= +|| .||+||.+..... ..+++..-|..|....
T Consensus 20 ~~~~~f~i~~~PPy~nG-~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~ 67 (601)
T PF00133_consen 20 KNKPKFFIHDPPPYANG-DLHIGHALNKTIKDIIARYKRMQGYNVLFPP 67 (601)
T ss_dssp TTSGEEEEEE---BTSS-S-BHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC-cccHHHHHHHHHHHHHHHHHHhCCcEeCCCC
Confidence 3456777777752 356 7999999887654 2344555566666553
No 152
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=47.77 E-value=28 Score=39.16 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=35.7
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCc
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDD 129 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~ 129 (400)
...+.|+|....+ .+++++++.+|. =||| .|||||+...+.. ..++++.-|..|....|=+
T Consensus 22 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D 85 (800)
T PRK13208 22 IWEEEGTYKFDPD--------ERKPVYSIDTPPPTVSG-SLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWD 85 (800)
T ss_pred HHHHCCCcccccc--------cCCCcEEEecCcCCCCC-CccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcC
Confidence 4556677654321 123567777743 4567 7999998876543 1344555566666655543
No 153
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.71 E-value=19 Score=39.75 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=35.0
Q ss_pred eeeccccCch-hHHHHH--HHHHhhhCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHH
Q 015773 234 CLIPCAIDQD-PYFRMT--RDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 300 (400)
Q Consensus 234 ~~vp~G~DQd-~~~~l~--rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~K 300 (400)
.+..=|.||. .||.-. -.+|-+-. .| ..+.+-|.-.=. |.|||||.|| .| +|+.|-+.
T Consensus 568 Dv~LEG~DQ~rGWFQSsLLTsvA~q~k--APYk~vivHGFtlDE~--G~KMSKSlGN-Vi----dP~~v~~G 630 (937)
T KOG0433|consen 568 DVYLEGVDQFRGWFQSSLLTSVAVQNK--APYKKVIVHGFTLDEN--GNKMSKSLGN-VV----DPTMVTDG 630 (937)
T ss_pred eeEEecchhcchHHHHHHHHHHHHhcc--CCchheeeeeeEecCC--ccchhhcccC-cC----CHHHHhCC
Confidence 3556788985 566433 45555432 34 334455655555 5899999999 55 45555444
No 154
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=46.63 E-value=83 Score=28.69 Aligned_cols=69 Identities=20% Similarity=0.343 Sum_probs=39.7
Q ss_pred EEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcc-cccc-cCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDE-KCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 88 iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~-a~~~-~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
+|.|.= +.+|+||+..+... ++. ++ .++|+|+... .... +..+.++-.++.+..+. ..|++.+++.|
T Consensus 3 l~~GrF---~P~H~GHl~~i~~a---~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~---~~~~~~~rv~i 71 (181)
T cd02168 3 VYIGRF---QPFHNGHLAVVLIA---LEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALS---DAGADLARVHF 71 (181)
T ss_pred EEeecc---CCCCHHHHHHHHHH---HHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHh---ccCCCcceEEE
Confidence 455532 45899998776544 222 34 5666665542 1121 23677776655443332 35888888877
Q ss_pred Ee
Q 015773 166 FS 167 (400)
Q Consensus 166 ~~ 167 (400)
..
T Consensus 72 ~p 73 (181)
T cd02168 72 RP 73 (181)
T ss_pred Ee
Confidence 64
No 155
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=45.80 E-value=13 Score=39.33 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=17.7
Q ss_pred eecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 264 IESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 264 l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+|+-++ .+.| +|||||.+| .|+|.|
T Consensus 268 ~H~g~l-~~~g--~KMSKSlGN-~i~l~d 292 (481)
T PRK14534 268 VHGEFL-IMEY--EKMSKSNNN-FITIKD 292 (481)
T ss_pred EEecEE-EecC--ceecccCCC-cccHHH
Confidence 344444 3554 899999998 888854
No 156
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=42.28 E-value=54 Score=37.23 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=38.1
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~ 130 (400)
..+.+.|+|....+ ..+++|++++|.= +|| .||+||++..... ..++++.-|..|....|=+|
T Consensus 16 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 16 KKWEKSGFFKPDGN--------SNKPPFCIDIPPPNVTG-SLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred HHHHHCCCcccCcc--------cCCCeEEEEeCCCCCCC-CCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 35666787755332 2345688888753 456 8999998876443 23455555666655555444
No 157
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=40.06 E-value=22 Score=35.46 Aligned_cols=70 Identities=13% Similarity=0.253 Sum_probs=40.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
.||| .|||||+..++..+.+-+. .|..+++-|=|.- .....+ .....++.++..+|++++ --++.||+-.
T Consensus 9 sPtG-~lHiG~~r~al~n~~~Ar~-~~G~~iLRieDtD----~~R~~~---~~~~~i~~~L~wlGl~~D-~~~~~QS~r~ 78 (314)
T PF00749_consen 9 SPTG-YLHIGHARTALLNYLFARK-YGGKFILRIEDTD----PERCRP---EFYDAILEDLRWLGLEWD-YGPYYQSDRL 78 (314)
T ss_dssp -SSS-S-BHHHHHHHHHHHHHHHH-TTSEEEEEEETSS----TTTCHH---HHHHHHHHHHHHHT---S-TCEEEGGGGH
T ss_pred CCCC-CcccchhHHHHHHHHHHhc-cCceEEEeccccc----cccchh---hHHHHHHhheeEEEEecC-CeEEeHHHHH
Confidence 4777 7999999999987544444 5777777665522 112222 333456677777899886 3355577654
No 158
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=36.84 E-value=57 Score=34.10 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=24.0
Q ss_pred hhhCCCCCeeeecccccCCCCCCCcCCCCCCC
Q 015773 254 PRIGYHKPALIESSFFPALQGETGKMSASDPN 285 (400)
Q Consensus 254 ~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~n 285 (400)
+-||.+.|...|-++|..-+| .|.||-.+.
T Consensus 259 kAfgW~pPkFaHlpLl~n~d~--sKLSKRqgD 288 (524)
T KOG1149|consen 259 KAFGWQPPKFAHLPLLLNPDG--SKLSKRQGD 288 (524)
T ss_pred HHhCCCCCceeeeeeeecCCc--chhhhhcCc
Confidence 457888898888888888776 799998664
No 159
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.56 E-value=30 Score=39.17 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCccc
Q 015773 95 SSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDEK 131 (400)
Q Consensus 95 Tg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~a 131 (400)
|| +||+||.+..... ..++++.-|..+..+-|=+||
T Consensus 45 TG-~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 45 TG-SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred CC-cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 77 8999998876443 244555557776666555553
No 160
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=33.31 E-value=1e+02 Score=35.07 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=36.1
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~ 130 (400)
...+.|+|....+ ++++|.+.+|. =+|| .||+||.+..... ..++++.-|..|...-|=+|
T Consensus 21 ~W~~~~~f~~~~~---------~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 21 KWEEKGYFKPDDN---------SKKPFSIVIPPPNVTG-SLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred HHHHCCCcccCcC---------CCCCEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 5666787765321 34567776654 2456 8999998876443 13445555665555545444
No 161
>PLN02660 pantoate--beta-alanine ligase
Probab=31.10 E-value=5.3e+02 Score=25.45 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=39.5
Q ss_pred ccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhc
Q 015773 237 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINK 303 (400)
Q Consensus 237 p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k 303 (400)
.+=.| .|-+.+.|.+++.++++ ..++..+++.--+| =-||+= ..||++...+....|.+
T Consensus 152 FGeKD-~QQl~vIrrmV~dL~~~-v~I~~~ptvRe~dG--LA~SSR----N~yLs~~eR~~A~~l~~ 210 (284)
T PLN02660 152 FGKKD-YQQWRVIRRMVRDLDFD-IEVVGSPIVREADG--LAMSSR----NVRLSAEEREKALSISR 210 (284)
T ss_pred ecchH-HHHHHHHHHHHHHcCCC-ceEEeeCceECCCC--Ceeccc----cccCCHHHHHHHHHHHH
Confidence 44445 88888889999999983 34455788888776 568764 45777755444444443
No 162
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=31.04 E-value=2.2e+02 Score=28.56 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=39.1
Q ss_pred ceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecC-ccccc-ccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 015773 85 KFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTD-DEKCM-WKNLSVEESQRLARENAKDIIACGFDVTK 162 (400)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D-~~a~~-~~~~~~e~i~~~~~~~~~~ilA~G~dp~k 162 (400)
...+|.|.= ..+|+||+..+... .+.++ .++|+++. ..... .+..+.++-.+.. +..++ +++..+
T Consensus 7 ~~~~~~G~F---~P~H~GHl~~i~~a----~~~~d-~l~v~i~s~~~~~~~~~~~~~~~R~~mi----~~~~~-~~~~~r 73 (340)
T PRK05379 7 DYLVFIGRF---QPFHNGHLAVIREA----LSRAK-KVIVLIGSADLARSIKNPFSFEERAQMI----RAALA-GIDLAR 73 (340)
T ss_pred eEEEEeecc---CCCCHHHHHHHHHH----HHHCC-EEEEEEccCCCCCcCCCCCCHHHHHHHH----HHHhh-cCCCce
Confidence 456777743 46999998776554 22222 46666753 22222 1246777666443 33333 676667
Q ss_pred eEEEe
Q 015773 163 TFIFS 167 (400)
Q Consensus 163 t~i~~ 167 (400)
+.|..
T Consensus 74 ~~~~p 78 (340)
T PRK05379 74 VTIRP 78 (340)
T ss_pred EEEEE
Confidence 76653
No 163
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=30.15 E-value=3.5e+02 Score=23.98 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=33.2
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEec-Cccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 015773 97 EALHLGHLVPFMFTNRYLQDAFKVPLVIQLT-DDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 171 (400)
Q Consensus 97 ~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~-D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~ 171 (400)
+.+|+||+..+... + +.++ .++|+++ +......+ ..+.++-.++.+..+ ...|++-+++.+....++
T Consensus 9 dP~H~GHl~~i~~a---~-~~~d-~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~---~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 9 QPFHLGHLKVIKWI---L-EEVD-ELIIGIGSAQESHTLENPFTAGERVLMIRRAL---EEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred CCCCHHHHHHHHHH---H-HHCC-EEEEEecCCCCCCCCCCCCCHHHHHHHHHHHH---HhcCCCcCeEEEEecCCC
Confidence 45999998776554 2 2222 3455453 32222222 366665443333222 223566667777654443
No 164
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=28.78 E-value=64 Score=34.82 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=26.8
Q ss_pred EEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEE--EecCcc
Q 015773 88 LYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVI--QLTDDE 130 (400)
Q Consensus 88 iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I--~I~D~~ 130 (400)
=|++-=|++ .||+||+-..+.- .+++. ..|..|.- -|+||=
T Consensus 117 e~~spn~~~-~~hiGh~r~~~~gd~l~r~~~-~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 117 EFSSANPAG-PLHIGHLRNAIIGDSLARILE-FLGYDVIREYYVNDWG 162 (566)
T ss_pred EecCCCCCC-CCchhhhHHHHHHHHHHHHHH-HCCCCeeEEeeecchH
Confidence 477888888 6999998877644 23344 45655543 267754
No 165
>PRK07217 replication factor A; Reviewed
Probab=28.75 E-value=1.6e+02 Score=29.40 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhc-CCCC--hHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHH
Q 015773 340 AELEHIKKEYGA-GGML--TGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM 390 (400)
Q Consensus 340 ~eleei~~~~~~-g~~~--~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~ 390 (400)
+-.++|.++|.. | +. ..++++.|-..|+++=-|..+++..+++.++++|=
T Consensus 6 ~~aeei~~~~s~lg-vdv~~~~ie~~L~~Lv~ey~VP~~EA~rSv~~~~~~k~g 58 (311)
T PRK07217 6 QHAEEIHEQFSDLG-VDVSVEDVEERLDTLVTEFKVPEDEARRSVTNYYLKEAG 58 (311)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 346788888887 4 45 78999999999999999999999999988889984
No 166
>PLN02843 isoleucyl-tRNA synthetase
Probab=28.58 E-value=1.5e+02 Score=34.43 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=26.1
Q ss_pred hCCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEE
Q 015773 82 KGEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQ 125 (400)
Q Consensus 82 ~g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~ 125 (400)
++++|++..|.= ++| .|||||.+..... ..+++..-|..+...
T Consensus 30 ~~~~f~i~~~PPy~nG-~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~ 75 (974)
T PLN02843 30 NGESFTLHDGPPYANG-DLHIGHALNKILKDFINRYQLLQGKKVHYV 75 (974)
T ss_pred CCCCEEEeCCCCCCCC-CcchhHHHHHHHHHHHHHHHHhcCCccccC
Confidence 456787777752 356 7999998876543 133444445554443
No 167
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=28.13 E-value=4.8e+02 Score=25.77 Aligned_cols=115 Identities=16% Similarity=0.213 Sum_probs=72.7
Q ss_pred CCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhc
Q 015773 38 GCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117 (400)
Q Consensus 38 g~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~ 117 (400)
|.-+=+++....|+.|++. .|.. |=.--.|..++.++.+.++ .+|.++.|+=||. ..|=+---.+ .. .+++.
T Consensus 57 GtCKSa~~~~sDLe~l~~~-t~~I--R~Y~sDCn~le~v~pAa~~-~g~kv~lGiw~td-d~~~~~~~ti-l~-ay~~~- 128 (305)
T COG5309 57 GTCKSADQVASDLELLASY-THSI--RTYGSDCNTLENVLPAAEA-SGFKVFLGIWPTD-DIHDAVEKTI-LS-AYLPY- 128 (305)
T ss_pred CCCcCHHHHHhHHHHhccC-CceE--EEeeccchhhhhhHHHHHh-cCceEEEEEeecc-chhhhHHHHH-HH-HHhcc-
Confidence 5555566777788887766 3322 2111346668888888777 5699999999995 6885543222 22 45554
Q ss_pred CCC--cEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 015773 118 FKV--PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 118 ~~~--~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~ 161 (400)
.+- ...|.+| -|+...+.++.+++.++.......+.+.|++..
T Consensus 129 ~~~d~v~~v~VG-nEal~r~~~tasql~~~I~~vrsav~~agy~gp 173 (305)
T COG5309 129 NGWDDVTTVTVG-NEALNRNDLTASQLIEYIDDVRSAVKEAGYDGP 173 (305)
T ss_pred CCCCceEEEEec-hhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCc
Confidence 233 3334444 466554569999999877666555667898853
No 168
>PLN02381 valyl-tRNA synthetase
Probab=27.40 E-value=72 Score=37.27 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=38.3
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~ 130 (400)
..+.+.|+|....+ ..+++|++.+|.= +|| .||+||.+..... ..++++.-|..|....|=+|
T Consensus 111 ~~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 111 AWWEKSGYFGADAK--------SSKPPFVIVLPPPNVTG-ALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred HHHHHCCCccCCcc--------CCCCcEEEEeCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 35667787755321 2345688888864 455 7999998876543 23455555666655544443
No 169
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=26.75 E-value=63 Score=37.68 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=38.2
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~ 130 (400)
..+.+.|+|..... + ..+.+|+++.|.= +|| .||+||.+..... ..++++.-|..|....|-+|
T Consensus 30 ~~W~~~~~f~~~~~-~------~~~~~f~i~~pPP~~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 30 PFWQERGYFHGDEH-D------RTRPPFSIVLPPPNVTG-SLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred HHHHHCCCccCCcc-c------CCCCCEEEecCCCCCCC-cchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 35566777754211 0 2345688888863 456 7999998876443 24455555666655555444
No 170
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=26.65 E-value=4.6e+02 Score=26.34 Aligned_cols=96 Identities=19% Similarity=0.406 Sum_probs=50.0
Q ss_pred cccccccCCccCCCCccHHHHHHhhCCC-------cCC-hHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHh-C
Q 015773 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQ-------RLD-QSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK-G 83 (400)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~kl~~~fg~~-------~i~-~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~-g 83 (400)
-.+.-|||+... + ++++++|+. -++ -+||+.+-+ ||+ ..++++|. -...+.+..++.+.+ |
T Consensus 90 i~~~stpfd~~s---v---d~l~~~~v~~~KIaS~~~~n~pLL~~~A~-~gk--PvilStGm-atl~Ei~~Av~~i~~~G 159 (329)
T TIGR03569 90 IEFLSTPFDLES---A---DFLEDLGVPRFKIPSGEITNAPLLKKIAR-FGK--PVILSTGM-ATLEEIEAAVGVLRDAG 159 (329)
T ss_pred CcEEEEeCCHHH---H---HHHHhcCCCEEEECcccccCHHHHHHHHh-cCC--cEEEECCC-CCHHHHHHHHHHHHHcC
Confidence 356678887653 2 234445432 233 235555544 455 46788998 344444444444443 4
Q ss_pred Cc---eeE-EeecC-CCCCCcchhhhHHHHHHHHHHHhcCCCcEEE
Q 015773 84 EK---FYL-YTGRG-PSSEALHLGHLVPFMFTNRYLQDAFKVPLVI 124 (400)
Q Consensus 84 ~~---~~i-ytG~~-PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I 124 (400)
.+ +.+ -|... |+. .. -+.+..+ ..|++.|++||..
T Consensus 160 ~~~~~i~llhC~s~YP~~--~~---~~nL~~I-~~Lk~~f~~pVG~ 199 (329)
T TIGR03569 160 TPDSNITLLHCTTEYPAP--FE---DVNLNAM-DTLKEAFDLPVGY 199 (329)
T ss_pred CCcCcEEEEEECCCCCCC--cc---cCCHHHH-HHHHHHhCCCEEE
Confidence 33 433 24333 553 22 2334444 6788888888765
No 171
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=26.40 E-value=4e+02 Score=24.75 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=38.6
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcc-cccc-cCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDE-KCMW-KNLSVEESQRLARENAKDIIACGFDVTKT 163 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~-a~~~-~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 163 (400)
..+|.|+- ..+|+||+-.+... +.++ + .++|.||=-. +.+. ++.|..+-....+..+.. .+..++
T Consensus 6 ~~v~iGRF---QPfH~GHl~~I~~a---l~~~-d-evII~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e-----~~~~rv 72 (196)
T PRK13793 6 YLVFIGRF---QPFHLAHMQTIEIA---LQQS-R-YVILALGSAQMERNIKNPFLAIEREQMILSNFSL-----DEQKRI 72 (196)
T ss_pred EEEEEecC---CCCcHHHHHHHHHH---HHhC-C-EEEEEEccCCCCCCCCCCCCHHHHHHHHHHhcch-----hhcceE
Confidence 56788865 34899998665443 4432 3 5666665322 2222 347877666444443322 133456
Q ss_pred EEEecccc
Q 015773 164 FIFSDFDY 171 (400)
Q Consensus 164 ~i~~~s~~ 171 (400)
.+..-.|.
T Consensus 73 ~~ipi~D~ 80 (196)
T PRK13793 73 RFVHVVDV 80 (196)
T ss_pred EEEecCCc
Confidence 55543333
No 172
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=24.21 E-value=82 Score=36.46 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~ 130 (400)
.+.+.|+|....+.+. -..+.+|++.+|.= ||| .||+||.+..... ..++++.-|..|....|=+|
T Consensus 40 ~W~~~~~f~~~~~~~~----~~~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 108 (995)
T PTZ00419 40 WWEKSGFFKPAEDAKS----LNSGKKFVIVLPPPNVTG-YLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDH 108 (995)
T ss_pred HHHHCCCcccCccccc----cCCCCeEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 5566777755321110 02345677777753 456 7999998876443 24455555776666555444
No 173
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=23.88 E-value=32 Score=33.21 Aligned_cols=90 Identities=17% Similarity=0.380 Sum_probs=56.5
Q ss_pred ccccccCCccCCCC-------ccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCce
Q 015773 14 EQVVSPWEVSSSGK-------IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKF 86 (400)
Q Consensus 14 ~~~~~pw~~~~~~~-------~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~ 86 (400)
=-.+|||+-.- .. -|--.+++.|+.+.+| .++ +.|.+|-.-|=+++.+=++++...+..|...
T Consensus 172 La~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~sfD-aIi--------HDPPRfS~AgeLYseefY~El~RiLkrgGrl 241 (287)
T COG2521 172 LAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDESFD-AII--------HDPPRFSLAGELYSEEFYRELYRILKRGGRL 241 (287)
T ss_pred eeccCCCCccc-cccccEEecccHHHHHhcCCccccc-eEe--------eCCCccchhhhHhHHHHHHHHHHHcCcCCcE
Confidence 34589997532 11 2556688889988777 333 2355666666667766677777778889999
Q ss_pred eEEeecCCCCCCcchhhhHHHHHHHHHHHhc
Q 015773 87 YLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117 (400)
Q Consensus 87 ~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~ 117 (400)
+-|+| .|.. .-| |-=++--.. ..|.++
T Consensus 242 FHYvG-~Pg~-ryr-G~d~~~gVa-~RLr~v 268 (287)
T COG2521 242 FHYVG-NPGK-RYR-GLDLPKGVA-ERLRRV 268 (287)
T ss_pred EEEeC-CCCc-ccc-cCChhHHHH-HHHHhc
Confidence 99999 3442 222 332333333 567665
No 174
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.45 E-value=64 Score=35.75 Aligned_cols=85 Identities=24% Similarity=0.198 Sum_probs=47.5
Q ss_pred CCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCe---eeecccccCCCCC
Q 015773 199 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGE 275 (400)
Q Consensus 199 ~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~---~l~~~~lp~L~G~ 275 (400)
+.+++++...||.=--- .|-.. +.+ ..|.=|.||..-.-.|--+....-+.+|. .+.+-++.+-+|
T Consensus 531 SGSMPYAq~HyPFenk~-~fe~~------fPa---dFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG- 599 (1070)
T KOG0434|consen 531 SGSMPYAQRHYPFENKE-EFEEN------FPA---DFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDG- 599 (1070)
T ss_pred cCCCcchhhcCCccchH-HHhhc------Cch---HhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEeccc-
Confidence 45788888888854221 11111 223 35778999975443443333332233442 244667777776
Q ss_pred CCcCCCCCCCCeeeecCcHHHHHHH
Q 015773 276 TGKMSASDPNSAIYVTDSAKAIKNK 300 (400)
Q Consensus 276 ~~KMSKS~~nsaI~L~D~~~~i~~K 300 (400)
+||||+..| -.+|..|-+|
T Consensus 600 -~KMSKrlkN-----YPdP~~iink 618 (1070)
T KOG0434|consen 600 -KKMSKRLKN-----YPDPSLIINK 618 (1070)
T ss_pred -HHHhhhhhc-----CCCHHHHHHh
Confidence 899999876 2345555443
No 175
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=22.36 E-value=3.5e+02 Score=23.88 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=28.9
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSAS 282 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS 282 (400)
.+-+|.||..-.....++-++.|...-....-+++-.-. +.|.|+|
T Consensus 91 ~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~~~--~~~~SSt 136 (153)
T PRK00777 91 AIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLAED--GKPISST 136 (153)
T ss_pred EEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeecCC--CCeeeHH
Confidence 467888988887777777777777432333344433322 4677776
No 176
>PRK10594 murein L,D-transpeptidase; Provisional
Probab=21.61 E-value=68 Score=34.97 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.8
Q ss_pred eeeecCcHH-HHHHHhhcccccCCcchhH
Q 015773 287 AIYVTDSAK-AIKNKINKYAFSGGQESVE 314 (400)
Q Consensus 287 aI~L~D~~~-~i~~KI~k~A~t~~~~t~e 314 (400)
+|||.|||. ..++|-.+ |||-|++-+|
T Consensus 498 ~IYLHDTP~k~LF~r~~R-a~ShGCIRVe 525 (608)
T PRK10594 498 AIYLHDTPNHNLFQKDIR-ALSSGCVRVN 525 (608)
T ss_pred ceeecCCCChHHhCcCcc-cccCCeeEeC
Confidence 899999886 88999999 9999998655
No 177
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.44 E-value=2e+02 Score=28.86 Aligned_cols=96 Identities=19% Similarity=0.441 Sum_probs=50.0
Q ss_pred ccccccCCccCCCCccHHHHHHhhCC-------CcCC-hHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHH-hCC
Q 015773 14 EQVVSPWEVSSSGKIDYDKLIDKFGC-------QRLD-QSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE-KGE 84 (400)
Q Consensus 14 ~~~~~pw~~~~~~~~dy~kl~~~fg~-------~~i~-~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~-~g~ 84 (400)
.+..|||+... +|+ +.++|+ .-++ -+||+.+-+ ||+ ..++++|. ....+.+..++.+. .|.
T Consensus 92 ~~~stpfd~~s---vd~---l~~~~v~~~KI~S~~~~n~~LL~~va~-~gk--PvilstG~-~t~~Ei~~Av~~i~~~g~ 161 (327)
T TIGR03586 92 TIFSSPFDETA---VDF---LESLDVPAYKIASFEITDLPLIRYVAK-TGK--PIIMSTGI-ATLEEIQEAVEACREAGC 161 (327)
T ss_pred cEEEccCCHHH---HHH---HHHcCCCEEEECCccccCHHHHHHHHh-cCC--cEEEECCC-CCHHHHHHHHHHHHHCCC
Confidence 56678887663 433 344533 2222 225555444 344 55688998 34445555555554 344
Q ss_pred -ceeEE---eecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecC
Q 015773 85 -KFYLY---TGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTD 128 (400)
Q Consensus 85 -~~~iy---tG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D 128 (400)
++.++ +++ ||. . +-+.+..+ ..|++.+++||-+ .|
T Consensus 162 ~~i~LlhC~s~Y-P~~--~---~~~nL~~i-~~lk~~f~~pVG~--SD 200 (327)
T TIGR03586 162 KDLVLLKCTSSY-PAP--L---EDANLRTI-PDLAERFNVPVGL--SD 200 (327)
T ss_pred CcEEEEecCCCC-CCC--c---ccCCHHHH-HHHHHHhCCCEEe--eC
Confidence 34432 233 442 1 23334444 6778878888755 56
No 178
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=20.19 E-value=1.5e+02 Score=26.09 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=22.8
Q ss_pred ceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcc
Q 015773 85 KFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~ 130 (400)
++..+.| |=+.+|.||+--+-.. +.+ |-.++|.|+.++
T Consensus 3 ~iv~~~G---~FD~~H~GHi~~L~~A-~~l----gd~liVgV~~D~ 40 (152)
T cd02173 3 KVVYVDG---AFDLFHIGHIEFLEKA-REL----GDYLIVGVHDDQ 40 (152)
T ss_pred eEEEEcC---cccCCCHHHHHHHHHH-HHc----CCEEEEEEeCcH
Confidence 3444444 4468999997654443 333 456777777654
Done!