Query 015773
Match_columns 400
No_of_seqs 242 out of 1766
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:25:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 6E-103 2E-107 790.6 31.5 381 10-395 20-406 (406)
2 3hv0_A Tryptophanyl-tRNA synth 100.0 1E-102 5E-107 785.9 27.6 381 16-398 3-386 (393)
3 3i05_A Tryptophanyl-tRNA synth 100.0 9E-102 3E-106 780.5 27.3 380 13-397 8-388 (395)
4 3hzr_A Tryptophanyl-tRNA synth 100.0 8.4E-99 3E-103 756.4 32.8 375 15-395 12-386 (386)
5 1r6t_A Tryptophanyl-tRNA synth 100.0 1.3E-97 4E-102 767.0 30.5 388 10-398 78-469 (477)
6 1r6u_A Tryptophanyl-tRNA synth 100.0 4.8E-98 2E-102 760.9 26.8 389 10-399 31-423 (437)
7 3jxe_A Tryptophanyl-tRNA synth 100.0 4.1E-97 1E-101 745.4 31.5 366 13-395 3-370 (392)
8 2ip1_A Tryptophanyl-tRNA synth 100.0 1.6E-96 5E-101 750.6 31.7 388 9-397 19-414 (432)
9 3foc_A Tryptophanyl-tRNA synth 100.0 4.9E-95 1.7E-99 738.5 29.6 370 26-396 32-451 (451)
10 3a04_A Tryptophanyl-tRNA synth 100.0 2.6E-91 8.9E-96 701.3 29.3 362 13-392 2-369 (372)
11 3prh_A Tryptophanyl-tRNA synth 100.0 1.6E-66 5.5E-71 521.7 21.4 303 66-392 11-336 (388)
12 3tzl_A Tryptophanyl-tRNA synth 100.0 2.8E-64 9.4E-69 496.7 23.0 281 85-392 3-300 (322)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 2.2E-64 7.4E-69 506.9 22.1 306 59-389 7-371 (375)
14 2cya_A Tyrosyl-tRNA synthetase 100.0 8E-64 2.7E-68 501.2 25.1 295 59-380 10-347 (364)
15 2j5b_A Tyrosyl-tRNA synthetase 100.0 2.5E-63 8.5E-68 494.9 22.4 304 59-393 15-347 (348)
16 2g36_A Tryptophanyl-tRNA synth 100.0 3.2E-63 1.1E-67 492.5 21.9 287 84-392 11-316 (340)
17 3sz3_A Tryptophanyl-tRNA synth 100.0 7.2E-64 2.5E-68 496.2 16.3 286 86-392 7-315 (341)
18 1yi8_B Tryptophanyl-tRNA synth 100.0 8.4E-63 2.9E-67 491.4 22.4 290 83-392 20-326 (351)
19 3vgj_A Tyrosyl-tRNA synthetase 100.0 1.9E-62 6.5E-67 491.9 24.6 304 58-383 30-358 (373)
20 2el7_A Tryptophanyl-tRNA synth 100.0 2.4E-62 8.3E-67 485.8 24.2 286 86-392 2-305 (337)
21 3n9i_A Tryptophanyl-tRNA synth 100.0 1.1E-62 3.8E-67 487.9 19.0 286 85-392 15-320 (346)
22 2yxn_A Tyrosyl-tRNA synthetase 100.0 5.4E-63 1.8E-67 487.9 16.5 290 58-381 7-321 (322)
23 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2.6E-62 9.1E-67 483.9 19.1 282 86-392 2-302 (328)
24 2yy5_A Tryptophanyl-tRNA synth 100.0 3.6E-62 1.2E-66 486.3 18.8 287 84-392 3-320 (348)
25 2cyb_A Tyrosyl-tRNA synthetase 100.0 3.1E-60 1.1E-64 468.9 26.4 292 59-380 7-321 (323)
26 2jan_A Tyrosyl-tRNA synthetase 100.0 5.3E-61 1.8E-65 488.0 21.0 289 58-382 6-319 (432)
27 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.4E-59 4.9E-64 502.0 28.0 318 60-392 16-361 (690)
28 1n3l_A Tyrosyl-tRNA synthetase 100.0 8E-60 2.7E-64 473.7 22.7 290 58-379 10-329 (372)
29 2pid_A Tyrosyl-tRNA synthetase 100.0 5.7E-60 1.9E-64 471.6 18.7 289 58-383 12-342 (356)
30 2zp1_A Tyrosyl-tRNA synthetase 100.0 6.6E-59 2.2E-63 457.4 25.5 285 59-380 4-308 (314)
31 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.4E-59 4.7E-64 476.7 21.0 290 59-382 5-317 (419)
32 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 2.4E-58 8.2E-63 468.7 25.2 289 59-382 7-318 (420)
33 2dlc_X Tyrosyl-tRNA synthetase 100.0 5.1E-58 1.8E-62 463.7 24.8 304 59-381 13-344 (394)
34 1h3f_A Tyrosyl-tRNA synthetase 100.0 2.4E-58 8.3E-63 469.5 21.8 290 58-391 11-325 (432)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 2.3E-57 7.9E-62 457.5 22.5 291 58-382 37-380 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.8E-49 6.3E-54 424.0 20.1 272 83-381 380-671 (690)
37 2cfo_A Glutamyl-tRNA synthetas 98.7 3.3E-06 1.1E-10 87.2 23.5 190 93-303 9-276 (492)
38 1nzj_A Hypothetical protein YA 98.7 7E-08 2.4E-12 93.7 9.9 175 93-289 13-239 (298)
39 1j09_A Glutamyl-tRNA synthetas 98.6 1.8E-07 6.2E-12 96.1 10.1 189 93-303 9-272 (468)
40 2ja2_A Glutamyl-tRNA synthetas 98.5 2E-06 6.9E-11 88.8 17.2 189 93-303 14-286 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.4 1.5E-06 5.2E-11 89.6 13.3 189 92-303 32-284 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.2 1.9E-06 6.6E-11 90.8 7.5 189 92-303 136-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 97.8 0.00031 1.1E-08 72.3 15.9 65 235-303 221-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.7 0.0012 4E-08 68.0 17.7 190 93-303 33-293 (490)
45 4gri_A Glutamate--tRNA ligase; 97.5 0.005 1.7E-07 63.8 18.5 50 234-285 231-280 (512)
46 1irx_A Lysyl-tRNA synthetase; 97.4 0.0003 1E-08 73.1 8.8 65 237-303 235-308 (523)
47 3aii_A Glutamyl-tRNA synthetas 97.3 0.00056 1.9E-08 71.2 8.6 74 88-172 97-172 (553)
48 3h99_A Methionyl-tRNA syntheta 96.6 0.013 4.5E-07 61.1 12.0 76 84-161 18-105 (560)
49 3tqo_A Cysteinyl-tRNA syntheta 95.8 0.024 8.3E-07 57.9 8.7 73 87-161 28-111 (462)
50 1qtq_A GLNRS, protein (glutami 94.5 0.16 5.5E-06 52.8 10.4 85 78-172 17-103 (553)
51 3fnr_A Arginyl-tRNA synthetase 93.5 0.025 8.5E-07 57.8 2.1 57 235-292 239-298 (464)
52 2hz7_A Glutaminyl-tRNA synthet 92.5 0.49 1.7E-05 51.6 10.3 85 78-172 57-143 (851)
53 2csx_A Methionyl-tRNA syntheta 91.1 0.11 3.8E-06 53.1 3.3 75 86-161 6-92 (497)
54 2d5b_A Methionyl-tRNA syntheta 90.9 0.14 4.8E-06 52.3 3.8 55 235-292 254-310 (500)
55 3u1f_A Methionyl-tRNA syntheta 90.0 0.68 2.3E-05 47.7 8.1 80 81-161 6-96 (542)
56 3kfl_A Methionyl-tRNA syntheta 87.7 0.19 6.6E-06 52.4 2.0 52 235-292 297-352 (564)
57 3u1f_A Methionyl-tRNA syntheta 87.3 0.3 1E-05 50.3 3.2 52 235-292 281-336 (542)
58 1ile_A Ilers, isoleucyl-tRNA s 86.6 0.33 1.1E-05 52.9 3.2 55 235-292 547-604 (821)
59 4dlp_A Aminoacyl-tRNA syntheta 85.5 0.32 1.1E-05 50.3 2.3 73 87-161 27-112 (536)
60 1iq0_A Arginyl-tRNA synthetase 85.3 0.15 5.3E-06 53.5 -0.3 54 235-292 350-407 (592)
61 1ffy_A Isoleucyl-tRNA syntheta 84.9 0.65 2.2E-05 51.3 4.5 53 235-292 551-608 (917)
62 2x1l_A Methionyl-tRNA syntheta 84.3 0.29 9.8E-06 50.4 1.3 76 85-161 13-99 (524)
63 3c8z_A Cysteinyl-tRNA syntheta 83.2 0.54 1.8E-05 47.0 2.7 73 87-161 42-126 (414)
64 2zue_A Arginyl-tRNA synthetase 82.2 0.47 1.6E-05 50.2 1.9 55 234-292 379-439 (629)
65 1li5_A Cysrs, cysteinyl-tRNA s 80.9 0.71 2.4E-05 46.9 2.6 71 88-160 26-107 (461)
66 1gax_A Valrs, valyl-tRNA synth 79.3 1.1 3.8E-05 49.1 3.7 53 235-292 484-541 (862)
67 1rqg_A Methionyl-tRNA syntheta 78.6 3.5 0.00012 44.2 7.2 77 84-161 2-90 (722)
68 2d5b_A Methionyl-tRNA syntheta 77.1 5 0.00017 40.6 7.6 74 87-161 5-90 (500)
69 2csx_A Methionyl-tRNA syntheta 76.4 4.4 0.00015 41.1 7.0 54 235-292 253-308 (497)
70 4arc_A Leucine--tRNA ligase; l 76.1 11 0.00036 41.5 10.2 93 60-161 37-140 (880)
71 2ejc_A Pantoate--beta-alanine 75.9 53 0.0018 30.9 15.1 50 237-294 146-195 (280)
72 1wz2_A Leucyl-tRNA synthetase; 75.6 1.8 6.2E-05 48.0 4.1 54 235-292 606-663 (967)
73 4dlp_A Aminoacyl-tRNA syntheta 73.4 8.3 0.00028 39.5 8.2 52 235-292 279-334 (536)
74 1wkb_A Leucyl-tRNA synthetase; 73.1 1.6 5.6E-05 47.3 2.9 54 235-292 606-663 (810)
75 3c8z_A Cysteinyl-tRNA syntheta 70.9 8.1 0.00028 38.4 7.2 54 235-292 247-304 (414)
76 3sp1_A Cysteinyl-tRNA syntheta 70.7 13 0.00046 38.0 8.9 72 89-162 47-139 (501)
77 3kfl_A Methionyl-tRNA syntheta 69.4 10 0.00035 39.3 7.8 77 83-161 25-113 (564)
78 1li5_A Cysrs, cysteinyl-tRNA s 68.2 11 0.00036 38.2 7.5 53 235-292 223-279 (461)
79 1f7u_A Arginyl-tRNA synthetase 66.1 2.3 7.8E-05 44.8 2.0 56 235-296 368-424 (607)
80 2x1l_A Methionyl-tRNA syntheta 64.5 16 0.00056 37.1 8.1 54 235-292 268-323 (524)
81 2v0c_A Aminoacyl-tRNA syntheta 61.3 2.5 8.7E-05 46.4 1.4 15 277-292 636-650 (878)
82 4arc_A Leucine--tRNA ligase; l 55.5 8.3 0.00028 42.3 4.2 14 278-292 639-652 (880)
83 1gax_A Valrs, valyl-tRNA synth 55.4 13 0.00046 40.5 5.8 61 60-130 19-82 (862)
84 3sp1_A Cysteinyl-tRNA syntheta 52.7 4.6 0.00016 41.4 1.5 53 235-291 256-311 (501)
85 1rqg_A Methionyl-tRNA syntheta 52.2 2.7 9.2E-05 45.1 -0.4 30 259-292 327-357 (722)
86 3foc_A Tryptophanyl-tRNA synth 51.4 3.3 0.00011 42.0 0.1 24 223-246 222-247 (451)
87 1ile_A Ilers, isoleucyl-tRNA s 49.2 9.1 0.00031 41.5 3.2 49 82-131 36-88 (821)
88 2v0c_A Aminoacyl-tRNA syntheta 48.7 27 0.00092 38.2 6.9 93 60-161 16-120 (878)
89 1iq0_A Arginyl-tRNA synthetase 41.0 18 0.00063 37.6 3.9 43 86-129 106-152 (592)
90 1ffy_A Isoleucyl-tRNA syntheta 37.4 19 0.00066 39.6 3.5 43 82-125 46-91 (917)
91 1f7u_A Arginyl-tRNA synthetase 35.7 30 0.001 36.2 4.5 39 89-129 149-192 (607)
92 2zue_A Arginyl-tRNA synthetase 34.0 31 0.001 36.2 4.3 39 89-129 125-168 (629)
93 3oqi_A YVMC, putative uncharac 29.4 3.4E+02 0.012 25.0 10.6 93 81-181 27-130 (257)
94 3fnr_A Arginyl-tRNA synthetase 27.9 48 0.0017 33.4 4.3 42 89-131 36-81 (464)
95 1qtq_A GLNRS, protein (glutami 23.4 46 0.0016 34.4 3.2 49 234-285 225-274 (553)
96 3ci9_A Heat shock factor-bindi 21.8 1.5E+02 0.0053 20.2 4.6 29 361-389 5-33 (48)
97 1wkb_A Leucyl-tRNA synthetase; 20.8 41 0.0014 36.2 2.3 59 60-125 16-77 (810)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5.7e-103 Score=790.57 Aligned_cols=381 Identities=45% Similarity=0.868 Sum_probs=345.1
Q ss_pred hhccccccccCCccC------CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhC
Q 015773 10 EEEREQVVSPWEVSS------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (400)
Q Consensus 10 ~~~~~~~~~pw~~~~------~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g 83 (400)
.++.++.||||+|++ ++.|||+|||++||++|||+++++||+++||+++|+|++||+||+|+|++++++++++|
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 455799999999986 23699999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015773 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 163 (400)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 163 (400)
+|+++|+||+|||++|||||++|++++ +|||+++|++++|+|||+||+++++++++++++|+++++++|+|||+||+++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~-~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 178 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLC-KYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLT 178 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHH-HHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 999999999999988999999999988 9999999999999999999998888999999999999999999999999999
Q ss_pred EEEecccccccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCch
Q 015773 164 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQD 243 (400)
Q Consensus 164 ~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd 243 (400)
+||+||+|.+ .+|.++++|+|++|++++++++||++++|+|+|+||+|||||+|+++||+|+.+. .|+||||.||+
T Consensus 179 ~i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~---a~lvpvG~DQ~ 254 (406)
T 3tze_A 179 YIFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQD 254 (406)
T ss_dssp EEEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTC---EEEEEEEGGGH
T ss_pred EEEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCC---CeEEeeccchH
Confidence 9999999985 8899999999999999999999998999999999999999999999999987644 48999999999
Q ss_pred hHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCc
Q 015773 244 PYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANL 323 (400)
Q Consensus 244 ~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p 323 (400)
||+++|||+|+|+|+++|.++++++||+|+|+++|||||.|||+|||+|+|++|++||++|||||++.+++++++.||||
T Consensus 255 ~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p 334 (406)
T 3tze_A 255 PFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDI 334 (406)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCG
T ss_pred HHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCC
Confidence 99999999999999999999999999999997679999998889999999999999999999999999999999999999
Q ss_pred ccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015773 324 EVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 395 (400)
Q Consensus 324 ~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (400)
++|++++|+++|+.+++++++|+++|++|+++|++||+.||+.|+++|+|+|+||++++++.|++||..|++
T Consensus 335 ~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~ 406 (406)
T 3tze_A 335 DVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406 (406)
T ss_dssp GGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCGGGC
T ss_pred cccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcCCC
Confidence 999999999999878899999999999999999999999999999999999999999999999999999875
No 2
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.4e-102 Score=785.95 Aligned_cols=381 Identities=54% Similarity=0.985 Sum_probs=338.8
Q ss_pred ccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeecC
Q 015773 16 VVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (400)
Q Consensus 16 ~~~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~ 93 (400)
-||||+|++ ...+||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+|+++|+||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 589999986 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 94 PSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 94 PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
|||++|||||+++++++ +|||+++|++++|+|||+||+++| .++++++++|+++++++|+|+|+||++++||+||+|+
T Consensus 83 PTa~~lHlGh~v~~~~~-~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~ 161 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFT-KYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYI 161 (393)
T ss_dssp CSSSSCBSTTHHHHHHH-HHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHH
T ss_pred CCCCCccHHHHHHHHHH-HHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHH
Confidence 99879999999999999 999999999999999999998888 5999999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHH
Q 015773 173 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 252 (400)
Q Consensus 173 ~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdl 252 (400)
+ .+|.++++++|++|+++|+++++|++++|+|+|+||+|||||+|+.+||+++..+.|++|+||||.||+||+++|||+
T Consensus 162 ~-~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdl 240 (393)
T 3hv0_A 162 A-ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDV 240 (393)
T ss_dssp H-HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHH
T ss_pred H-HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHH
Confidence 5 568899999999999999999999999999999999999999999999998877778889999999999999999999
Q ss_pred HhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHH
Q 015773 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYL 332 (400)
Q Consensus 253 a~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l 332 (400)
|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+++++++.||||++|++|+|+
T Consensus 241 a~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~ 320 (393)
T 3hv0_A 241 APRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYL 320 (393)
T ss_dssp TGGGTCCCCEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHH
T ss_pred HHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHH
Confidence 99999999999999999999997689999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCCC
Q 015773 333 SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM 398 (400)
Q Consensus 333 ~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (400)
++|+.+++++++|+++|++|+++|++||+.||+.|+++++|+|+||++++++.|++||..|++.|.
T Consensus 321 ~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~~ 386 (393)
T 3hv0_A 321 RFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAINDDVIAKFTNKSREQLL 386 (393)
T ss_dssp HHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHCCCCCCCC
T ss_pred HHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCcCHHHHH
Confidence 999888999999999999999999999999999999999999999999999999999999998765
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=9.2e-102 Score=780.53 Aligned_cols=380 Identities=54% Similarity=0.987 Sum_probs=314.1
Q ss_pred cccccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeec
Q 015773 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (400)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~ 92 (400)
.+..||||+|++ .+||+|||++||++|||+++++||+++||+++|+|++||+||+|+|++.+++++++|+|+++|+||
T Consensus 8 ~~~~~~~~~~~~--~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~ 85 (395)
T 3i05_A 8 HEAVVTPWSVEG--DVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGR 85 (395)
T ss_dssp ----------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEE
T ss_pred ccceeccccccC--cccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEee
Confidence 467899999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
+|||++|||||++|++++ +|||+++|++++|+|||++++++++++++++++|+++++++|+|||+||++++||+||+|.
T Consensus 86 ~PTg~~lHLGh~v~~~~~-~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~ 164 (395)
T 3i05_A 86 GPSSESMHMGHLIPFMFT-KWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM 164 (395)
T ss_dssp CCCSSCCBGGGSHHHHHH-HHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHT
T ss_pred cCCCccchHHHHHHHHHH-HHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHH
Confidence 999989999999999998 9999999999999999999998888999999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccC-CCCceeeccccCchhHHHHHHH
Q 015773 173 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRD 251 (400)
Q Consensus 173 ~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~-~~~~~~vp~G~DQd~~~~l~rd 251 (400)
+ .||.++++|+|++|++++++++||++++|+|+|+||+|||||+|+++||||+.++ .+++|+||||.||+||+++|||
T Consensus 165 ~-~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rd 243 (395)
T 3i05_A 165 G-CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRD 243 (395)
T ss_dssp T-TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHH
T ss_pred H-HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHH
Confidence 6 8899999999999999999999999999999999999999999999999999987 4567999999999999999999
Q ss_pred HHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHH
Q 015773 252 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 331 (400)
Q Consensus 252 la~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~ 331 (400)
+|+|+|+++|.++++++||+|+|+++||||| ++|+|||+|+|++|++||+++||||+..+++++++.||||++|++|+|
T Consensus 244 la~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~ 322 (395)
T 3i05_A 244 IAPRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQW 322 (395)
T ss_dssp THHHHTCCCCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CCHHHHH
T ss_pred HHHHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHH
Confidence 9999999999999999999999977899999 777999999999999999999999999999999999999999999999
Q ss_pred HhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCC
Q 015773 332 LSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 397 (400)
Q Consensus 332 l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (400)
+++|+++++++++|+++|++|+++|++||+.||+.|+++|+|+|+||++++++.|++||..+++..
T Consensus 323 ~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~~d~~~~~~~~~~~~~ 388 (395)
T 3i05_A 323 LSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGP 388 (395)
T ss_dssp HHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHSCCCCTT
T ss_pred HHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhChhcccc
Confidence 999987889999999999999999999999999999999999999999999999999999998864
No 4
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=8.4e-99 Score=756.37 Aligned_cols=375 Identities=29% Similarity=0.612 Sum_probs=358.7
Q ss_pred cccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCC
Q 015773 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGP 94 (400)
Q Consensus 15 ~~~~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~P 94 (400)
..++||.....+.+||+|||++||++|||+++++||+++||+++|+|++||+||+|+|++.+++++++|+|+++|+||+|
T Consensus 12 ~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~P 91 (386)
T 3hzr_A 12 TPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYP 91 (386)
T ss_dssp -CCCSSCCCCSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEECC
T ss_pred CCcchhhhcCcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccCC
Confidence 46899987666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc
Q 015773 95 SSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 174 (400)
Q Consensus 95 Tg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~ 174 (400)
||+ |||||+++++++ +|||+++|++++|+|||++|+++|+++++++++|+++++++|+|||+||++++||.||+|++
T Consensus 92 TG~-lHLGh~v~~~~~-~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~- 168 (386)
T 3hzr_A 92 QKE-VALEEYITLEFA-RYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG- 168 (386)
T ss_dssp CSS-CBGGGHHHHHHH-HHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-
T ss_pred CCC-ccHHHHHHHHHH-HHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-
Confidence 995 999999999888 99999889999999999999998889999999999999999999999999999999999986
Q ss_pred chHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHh
Q 015773 175 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 254 (400)
Q Consensus 175 ~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~ 254 (400)
.+|..+.+++|++|++++++++|+++++|+|+|+||+|||||+|+++||||+.++ ++|+||||.||+||+++|||+|+
T Consensus 169 ~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~--~a~~VpvG~DQ~~hl~l~Rdla~ 246 (386)
T 3hzr_A 169 KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFHSIIDQIAT 246 (386)
T ss_dssp HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSC--CEEEEEEEGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCC--CccccccccchHHHHHHHHHHHH
Confidence 7888999999999999999999998999999999999999999999999998764 46999999999999999999999
Q ss_pred hhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhh
Q 015773 255 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF 334 (400)
Q Consensus 255 r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~ 334 (400)
|+|+++|+++++++||||+|+ +|||||+++|+|||+|+|++|++||+++||||++.|.+++++.||+|++|++++|+++
T Consensus 247 r~n~~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~ 325 (386)
T 3hzr_A 247 TLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNI 325 (386)
T ss_dssp HHTCCCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHH
T ss_pred HcCCCCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHH
Confidence 999999999999999999996 4999999889999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015773 335 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 395 (400)
Q Consensus 335 f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (400)
|+.+++++++|+++|++|+++|++||+.||++|+++|+|+|+||++++++.|++||..|++
T Consensus 326 ~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~~~~~~~~~ 386 (386)
T 3hzr_A 326 FSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTAYLKAYISKTKF 386 (386)
T ss_dssp HCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 9877889999999999999999999999999999999999999999999999999998875
No 5
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.3e-97 Score=766.97 Aligned_cols=388 Identities=61% Similarity=1.099 Sum_probs=360.9
Q ss_pred hhccccccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCcee
Q 015773 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (400)
Q Consensus 10 ~~~~~~~~~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~ 87 (400)
+++.++.||||+|++ .++|||+|||++|||+|||+++++||+++||+++|+|++||+||+|+|++.+++++++|++++
T Consensus 78 ~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 157 (477)
T 1r6t_A 78 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 157 (477)
T ss_dssp ----CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEE
T ss_pred cccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcE
Confidence 445689999999987 234999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 015773 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 167 (400)
Q Consensus 88 iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~ 167 (400)
+|+||+|||++|||||++|++++ +|||+.+|++++|+|||+|+++++.++++++++|+++++++|+|||+||++++||.
T Consensus 158 vy~G~dPTag~LHLGh~v~~~~~-~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~ 236 (477)
T 1r6t_A 158 LYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 236 (477)
T ss_dssp EEEEECCCTTCCBGGGHHHHHHH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEE
T ss_pred EEEcccCCCCCccHHHHHHHHHH-HHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEe
Confidence 99999999779999999999988 89999669999999999999998779999999999999999999999999999999
Q ss_pred cccccc--cchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhH
Q 015773 168 DFDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPY 245 (400)
Q Consensus 168 ~s~~~~--~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~ 245 (400)
||+|++ ..++.++++|++++|++++++++++.+++|+|+|+||+|||||+++.+++..++.+...+|+||||.||+||
T Consensus 237 nsd~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~ 316 (477)
T 1r6t_A 237 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPY 316 (477)
T ss_dssp HHHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHH
T ss_pred chhhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHH
Confidence 999985 378999999999999999999999888999999999999999887777765554455567999999999999
Q ss_pred HHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCccc
Q 015773 246 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 325 (400)
Q Consensus 246 ~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v 325 (400)
++++||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.|+||++
T Consensus 317 i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~ 396 (477)
T 1r6t_A 317 FRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDV 396 (477)
T ss_dssp HHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTT
T ss_pred HHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchH
Confidence 99999999999999999999999999998667999999999999999999999999999999999898999999999999
Q ss_pred chHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCCC
Q 015773 326 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNM 398 (400)
Q Consensus 326 ~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (400)
|++++||++|+.+++++++|+++|.+|++++++||+.||++|+++|+|+|+||++++++.|++||..|++.|.
T Consensus 397 ~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~~v~~~~~~~~~~~~ 469 (477)
T 1r6t_A 397 DVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAA 469 (477)
T ss_dssp CHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTSCCCCC--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 9999999999888999999999999999999999999999999999999999999999889999999999885
No 6
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=4.8e-98 Score=760.92 Aligned_cols=389 Identities=61% Similarity=1.094 Sum_probs=361.5
Q ss_pred hhccccccccCCccC--CCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCcee
Q 015773 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (400)
Q Consensus 10 ~~~~~~~~~pw~~~~--~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~ 87 (400)
+++.++.||||+|++ .+.|||+|||++|||+|||+++++||+++||+++|+|++||+|++|+|++.+++++++|+|++
T Consensus 31 ~~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 110 (437)
T 1r6u_A 31 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 110 (437)
T ss_dssp ----CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEE
T ss_pred cccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcE
Confidence 456689999999987 234999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 015773 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 167 (400)
Q Consensus 88 iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~ 167 (400)
+|+||+|||++|||||++|++++ +|||+.+|++++|+|||+|+++++.++++++++|+++++++|+|+|+||++++||.
T Consensus 111 vy~G~dPTag~LHLGh~v~~~~~-~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~ 189 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHLIPFIFT-KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFS 189 (437)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHH-HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred EEEcccCCCCCccHHHHHHHHHH-HHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEe
Confidence 99999999779999999999988 99999669999999999999998779999999999999999999999999999999
Q ss_pred ccccccc--chHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhH
Q 015773 168 DFDYVGG--AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPY 245 (400)
Q Consensus 168 ~s~~~~~--~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~ 245 (400)
||+|++. .++.++++++|+++++++++++++.+++|+|+|+||+|||||+++.+++..++.+...+|+||||.||+||
T Consensus 190 nSd~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~ 269 (437)
T 1r6u_A 190 DLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPY 269 (437)
T ss_dssp HHHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHH
T ss_pred chhhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHH
Confidence 9999853 68899999999999999999999888999999999999999877666654444445567999999999999
Q ss_pred HHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCccc
Q 015773 246 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEV 325 (400)
Q Consensus 246 ~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v 325 (400)
++++||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.|+||++
T Consensus 270 i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~ 349 (437)
T 1r6u_A 270 FRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDV 349 (437)
T ss_dssp HHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTT
T ss_pred HHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccH
Confidence 99999999999999999999999999998667999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCCCC
Q 015773 326 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 399 (400)
Q Consensus 326 ~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (400)
|++++||++|+.+++++++|+++|.+|++++++||+.||++|+++++|+|+||++++++.|++||..+++.|.+
T Consensus 350 ~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~~ 423 (437)
T 1r6u_A 350 DVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423 (437)
T ss_dssp CHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCCCSCC-
T ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcch
Confidence 99999999998889999999999999999999999999999999999999999999998899999999998864
No 7
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.1e-97 Score=745.43 Aligned_cols=366 Identities=41% Similarity=0.758 Sum_probs=329.9
Q ss_pred cccccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeec
Q 015773 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (400)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~ 92 (400)
+++.||||+|++ .+||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++.+++|+|+++|+|+
T Consensus 3 ~~~~v~pw~v~~--~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~ 80 (392)
T 3jxe_A 3 EEFKVTPWEVEG--VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGR 80 (392)
T ss_dssp CCCEECSSCEES--CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCccccC--cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEecc
Confidence 578999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 171 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~ 171 (400)
+||| +|||||+++++++ +|||+.+|++++|+|||+||+++++ .+++++++++++++++|+|||+||++++||.||+|
T Consensus 81 ~PTG-~lHLGh~v~~~~~-~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~ 158 (392)
T 3jxe_A 81 GPSG-PMHIGHIIPFFAT-KWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEF 158 (392)
T ss_dssp CCSS-CCBHHHHHHHHHH-HHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTS
T ss_pred CCCC-chhHHHHHHHHHH-HHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchh
Confidence 9998 8999999999988 9999966999999999999999875 89999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHH
Q 015773 172 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 251 (400)
Q Consensus 172 ~~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rd 251 (400)
++ ++..++.+++++|+++|+++++|++++|+|+|+||+|||| ||+.++ .+|+||||.||+||+++|||
T Consensus 159 ~~--~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaa--------Dil~~~--~a~~vpvG~DQ~~hl~l~Rd 226 (392)
T 3jxe_A 159 TK--IYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIA--------PTFFER--KRCLIPAAIDQDPYWRLQRD 226 (392)
T ss_dssp TH--HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHG--------GGGSSS--SCEEEEEEGGGHHHHHHHHH
T ss_pred HH--HHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHh--------hHHhhc--CCceeecccchHHHHHHHHH
Confidence 85 7888889999999999999999999999999999999999 677774 24899999999999999999
Q ss_pred HHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHH
Q 015773 252 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKY 331 (400)
Q Consensus 252 la~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~ 331 (400)
+|+|+|+++|.++++++||||+|+++|||||.|||+|||+|+|++|++||++||+||+..+++++++.|+||++|++++|
T Consensus 227 la~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~ 306 (392)
T 3jxe_A 227 FAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKW 306 (392)
T ss_dssp HTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------CHHHHH
T ss_pred HHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchhHHHHH
Confidence 99999999999999999999999877999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcc-CChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCC
Q 015773 332 LSFFL-EDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 395 (400)
Q Consensus 332 l~~f~-~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (400)
+.+|+ .+++++++|+++|++|+++|++||+.||+.|+++++|+|+||++++ ++|++||..+++
T Consensus 307 l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~-~~v~~~l~~g~~ 370 (392)
T 3jxe_A 307 LEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE-KLVEKFKYTGKL 370 (392)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSHHHHHTTSHH
T ss_pred HHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcc
Confidence 99997 5789999999999999999999999999999999999999999999 699999988764
No 8
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.6e-96 Score=750.58 Aligned_cols=388 Identities=53% Similarity=0.948 Sum_probs=339.1
Q ss_pred hhhccccccccCCccCC-------CCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHH
Q 015773 9 REEEREQVVSPWEVSSS-------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE 81 (400)
Q Consensus 9 ~~~~~~~~~~pw~~~~~-------~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~ 81 (400)
..++.++.||||+|++. +.+||+|||++|||+|||+++++||+++||+++|+|++||+|++|+|++.|+++++
T Consensus 19 ~~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~ 98 (432)
T 2ip1_A 19 STDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYE 98 (432)
T ss_dssp ---------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHH
T ss_pred ccccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHh
Confidence 34556899999999872 23999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCC
Q 015773 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDV 160 (400)
Q Consensus 82 ~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-~~~e~i~~~~~~~~~~ilA~G~dp 160 (400)
+|+|+++|+||+|||++|||||++|++++ +|||+.+|++++|+|||+||++.+. ++++++++++++++++|+|||+||
T Consensus 99 ~g~~~~vy~G~dPTag~LHLGh~v~~~~l-~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp 177 (432)
T 2ip1_A 99 QGKPFFLYTGRGPSSDSMHLGHMIPFVFT-KWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDP 177 (432)
T ss_dssp HTCCCEEEEEECCCSSCCBGGGHHHHHHH-HHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred cCCCeEEEEeecCCCCCccHHHHHHHHHH-HHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999779999999999998 8999966999999999999999874 899999999999999999999999
Q ss_pred CceEEEecccccccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecccc
Q 015773 161 TKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 240 (400)
Q Consensus 161 ~kt~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~ 240 (400)
++++||.||+|++..++..+.+++|+++++++++++++.+++|+|+|+||+|||||+++.+++..+..+....|+||||.
T Consensus 178 ~k~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~ 257 (432)
T 2ip1_A 178 KNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAI 257 (432)
T ss_dssp GGEEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEG
T ss_pred CceEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEecc
Confidence 99999999999866677788889999999999999998889999999999999999888877654442223469999999
Q ss_pred CchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcC
Q 015773 241 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 320 (400)
Q Consensus 241 DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g 320 (400)
||+||++++||+|+|+|+++|.++++++||+|+|+++|||||.+||+|||+|+|++|++||++|||||+..+.+++++.|
T Consensus 258 DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g 337 (432)
T 2ip1_A 258 DQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELG 337 (432)
T ss_dssp GGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccC
Confidence 99999999999999999999999999999999997789999999999999999999999999999999998889999999
Q ss_pred CCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhcCCCCC
Q 015773 321 ANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 397 (400)
Q Consensus 321 ~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (400)
+||++|++++||++|+.+++++++|+++|.+|++++++||+.||++|++++||+|+||++++++.|++++..+++.+
T Consensus 338 ~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~ 414 (432)
T 2ip1_A 338 GNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVW 414 (432)
T ss_dssp CCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCCC
T ss_pred CCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 99999999999999987899999999999999999999999999999999999999999999988999999988765
No 9
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=4.9e-95 Score=738.50 Aligned_cols=370 Identities=48% Similarity=0.853 Sum_probs=350.1
Q ss_pred CCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhH
Q 015773 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV 105 (400)
Q Consensus 26 ~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i 105 (400)
+.+||+|||++||++|||+++++||+++||+++|+|++||+||+|+|+++|++++++|+|+++||||+|||++|||||++
T Consensus 32 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v 111 (451)
T 3foc_A 32 AAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLL 111 (451)
T ss_dssp HHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEecCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc-cchHHHHHHH
Q 015773 106 PFMFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKV 183 (400)
Q Consensus 106 ~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~~~~~~~~~l 183 (400)
+++++ +|||+++|++++|+|||+|++++| .++++++++|+++++++|+|||+||++++||+||+|++ ..+|..+.+|
T Consensus 112 ~~~~l-~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L 190 (451)
T 3foc_A 112 PFIFT-KYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLV 190 (451)
T ss_dssp HHHHH-HHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHH
T ss_pred HHHHH-HHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHH
Confidence 99999 999999999999999999999988 59999999999999999999999999999999999997 6778888899
Q ss_pred HhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCc----------------------------------ccccccC
Q 015773 184 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF----------------------------------PHLFSGK 229 (400)
Q Consensus 184 ~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~----------------------------------~dil~~~ 229 (400)
+|++|+++|+++++|++++|+|+|+||+|||||+|+++| .||+.++
T Consensus 191 ~r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (451)
T 3foc_A 191 DRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSP 270 (451)
T ss_dssp HHTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCH
T ss_pred HhhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhh
Confidence 999999999999999999999999999999999998877 1333333
Q ss_pred CC--------------CceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHH
Q 015773 230 DH--------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 295 (400)
Q Consensus 230 ~~--------------~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~ 295 (400)
++ ++|+||||.||+||+++|||+|+|+|+++|.++++++||||+|+++|||||.+||+|+|+|+|+
T Consensus 271 a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~ 350 (451)
T 3foc_A 271 VHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPA 350 (451)
T ss_dssp HHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHH
T ss_pred cccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHH
Confidence 33 7899999999999999999999999999999999999999999777999999999999999999
Q ss_pred HHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHH
Q 015773 296 AIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 375 (400)
Q Consensus 296 ~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~ 375 (400)
+|++||+++|+||+..+++++++.|+||++|++|+||.+|+.+++++++|+++|++|+++|++||+.||+.|+++|+|+|
T Consensus 351 ~I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pir 430 (451)
T 3foc_A 351 QIKNKINRYAFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHA 430 (451)
T ss_dssp HHHHHHHHHSCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCccchhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998788999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhcCCCC
Q 015773 376 VARAAVTDEMVDAFMAVRPLP 396 (400)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ 396 (400)
+||++++++.|++||..|++.
T Consensus 431 er~~~l~~d~v~~f~~~~~~~ 451 (451)
T 3foc_A 431 ERRDKVDTTMIESFTVKKELQ 451 (451)
T ss_dssp HHHHTCCHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHhhCcccCC
Confidence 999999999999999999873
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=2.6e-91 Score=701.29 Aligned_cols=362 Identities=28% Similarity=0.453 Sum_probs=327.7
Q ss_pred cccccccCCccCCCCccHHHHHHhhCCCcCChHHHHHHHHHhCCChhHHHhcCcccccCCHHHHHHHHHhCCceeEEeec
Q 015773 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (400)
Q Consensus 13 ~~~~~~pw~~~~~~~~dy~kl~~~fg~~~i~~~~~~~~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~ 92 (400)
.+++||||+|++ .+||+|||++||+++||+. + +++++||.++|+|+|||+||+|||++.||+++++|+|++||||+
T Consensus 2 ~~~~v~pw~~~~--~~dy~kl~~~fg~~~i~~~-l-~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG~ 77 (372)
T 3a04_A 2 AAERLDPWGAVE--IKDYDRLLRTFGIRPFSEV-L-PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTGF 77 (372)
T ss_dssp ----CCSSCSTT--TTTTHHHHHTTTCEEGGGG-H-HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCCCCCC--CcCHHHHHHHhCCCCcchH-H-HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeCc
Confidence 467899999998 8999999999999999975 4 78889999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 171 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~-~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~ 171 (400)
+||| .|||||+++++++ +|+|+. |+.++|+|||+||++++.. +.+.++.++++++++|+|||+||+|++||.||++
T Consensus 78 ~PTG-~lHLGhyv~~~~~-~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~ 154 (372)
T 3a04_A 78 MPSG-KFHFGHKLTVDQL-IYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNR 154 (372)
T ss_dssp CCCS-CCBHHHHHHHHHH-HHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGS
T ss_pred CCCc-HhHHHHHHHHHHH-HHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccc
Confidence 9998 6999999999998 899986 8899999999999998764 5566899999999999999999999999999987
Q ss_pred cccchHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHH
Q 015773 172 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 251 (400)
Q Consensus 172 ~~~~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rd 251 (400)
. ..++..+..+++.+|++++.+.++ ..+.|.+.||++||||++..+++.++.+++ |+||||.||+||++||||
T Consensus 155 ~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRd 227 (372)
T 3a04_A 155 G-TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRD 227 (372)
T ss_dssp C-HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHH
T ss_pred h-HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHH
Confidence 5 456777788999999999999886 468899999999999877776655445554 899999999999999999
Q ss_pred HHhhhC----CCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccch
Q 015773 252 VAPRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI 327 (400)
Q Consensus 252 la~r~~----~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v 327 (400)
+|+|+| .++|+.++++++|||+| .|||||.+||+|+|+|+|++|++||++ |+||+..+++++++.||+|++|+
T Consensus 228 iA~rfn~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~~~~~G~p~~~~ 304 (372)
T 3a04_A 228 LADRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCS 304 (372)
T ss_dssp HHHHTTTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHHHHHCCCGGGCH
T ss_pred HHHHhcCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccccccCCCCchhh
Confidence 999998 57899999999999997 799999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHhh-ccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhc
Q 015773 328 PVKYLSF-FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAV 392 (400)
Q Consensus 328 ~~~~l~~-f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 392 (400)
+|+|+.+ +..+++++++|+++|++|+++||+||+.|++.|+++|+|+|+||+++.+ ++.+++..
T Consensus 305 i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~~-~~~kile~ 369 (372)
T 3a04_A 305 VYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAKT-IAWKLVEP 369 (372)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSCCC
T ss_pred HHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhcc
Confidence 9998555 4568899999999999999999999999999999999999999999877 77777653
No 11
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-66 Score=521.65 Aligned_cols=303 Identities=20% Similarity=0.254 Sum_probs=242.1
Q ss_pred cccccCCHHHHHHHHHhC-Ccee----EEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHH
Q 015773 66 VFFAHRDLNDILDAYEKG-EKFY----LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVE 140 (400)
Q Consensus 66 i~~~~~d~~~ll~~~~~g-~~~~----iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e 140 (400)
+-.+|||++.|++.+++| +|++ +|+|++||| .||||||+|+++.|++||+ ++.++++|||+||+++ ..+++
T Consensus 11 ~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG-~lHLGhyvGal~~~~~LQ~--~~~~~~~IaD~hAlt~-~~~~~ 86 (388)
T 3prh_A 11 IPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSG-SVTLGNYIGAMKQFVELQH--DYNSYFCIVDQHAITV-PQDRL 86 (388)
T ss_dssp ------------------------CCEEEEEECCCS-CCBHHHHHHTHHHHHHTTT--TSEEEEEECHHHHTTS-CCCHH
T ss_pred CCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCC-cchHHHHHHHHHHHHHHHc--cCcEEEEEecceeeec-CCCHH
Confidence 346999999999999999 8998 999999999 5999999999998899997 6778888999999996 68999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecccccccchHHHHHHHHhhcCHHHHHHhhCCC------CCccccccchhhhhc
Q 015773 141 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQA 214 (400)
Q Consensus 141 ~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~~------~~~~~g~~~YPllQa 214 (400)
++++++++++++|+|||+||+|++||.||+|+++ ....+.++..++++++.+..+|+ +++++|+|+||+|||
T Consensus 87 ~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~~--~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQA 164 (388)
T 3prh_A 87 ELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAH--AQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMA 164 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTHH--HHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHeEEEecccccch--HHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHH
Confidence 9999999999999999999999999999999864 23344577777777777665554 679999999999999
Q ss_pred CCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCC------CCCeeee---cccccCCCCCCCcCCCCCC-
Q 015773 215 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDP- 284 (400)
Q Consensus 215 ad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSKS~~- 284 (400)
| ||+.+++ |+||||.||+||+++|||+|+|||. ..|..+. +.++|||+|+++|||||+|
T Consensus 165 A--------DIl~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~ 233 (388)
T 3prh_A 165 A--------DILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPN 233 (388)
T ss_dssp H--------HHHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSS
T ss_pred H--------HHHHhCC---CEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCC
Confidence 9 7888887 5999999999999999999999984 2243333 4688999887789999997
Q ss_pred -CCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHH
Q 015773 285 -NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRL 363 (400)
Q Consensus 285 -nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~L 363 (400)
+|+|||+|+|++|++||++ |+||+...++. ..+++|++|++++|+++| +++++++|+++|+ |. +|++||+.|
T Consensus 234 ~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~~--~~~~~p~v~~l~~i~~~~--~~~~~eel~~~y~-g~-~~g~lK~~l 306 (388)
T 3prh_A 234 QKAYITLLDEPKQLEKKIKS-AVTDSEGIVKF--DKENKPGVSNLLTIYSIL--GNTTIEELEAKYE-GK-GYGEFKGDL 306 (388)
T ss_dssp TTSCCBTTCCHHHHHHHHHT-CCCCSSCCCCC--CTTTCHHHHHHHHHHHHH--HTCCHHHHHHHTT-TC-CHHHHHHHH
T ss_pred CCCeeecCCCHHHHHHHHhh-ccCCCCCcccC--CCCCCCCcchHHHHHHhc--CCCcHHHHHHHHc-CC-CHHHHHHHH
Confidence 6899999999999999999 99998655443 358899999999999998 5678999999999 75 999999999
Q ss_pred HHHHHHHhhhHHHHHHHhhHH-HHHHHHhc
Q 015773 364 AKVLTELVERHQVARAAVTDE-MVDAFMAV 392 (400)
Q Consensus 364 a~~i~~~l~~~~~~~~~~~~~-~~~~~~~~ 392 (400)
|+.|+++|+|+|++|++++++ +|++++..
T Consensus 307 ae~l~~~l~pirer~~~~~~~~~l~~il~~ 336 (388)
T 3prh_A 307 AEVVVNALKPIQDRYYELIESEELDRILDE 336 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 999999999999999998754 68887754
No 12
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=2.8e-64 Score=496.71 Aligned_cols=281 Identities=17% Similarity=0.203 Sum_probs=249.0
Q ss_pred ceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015773 85 KFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 164 (400)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 164 (400)
..++|+||+||| +||||||+|.+..|++||+ |+.++++|||+||++.+ .+++++++++++++++|+|||+||++++
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 568999999999 8999999987777799998 77788889999999864 5899999999999999999999999999
Q ss_pred EEecccccccchHHHHHHHHhhcCHHHHHH------hhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc
Q 015773 165 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238 (400)
Q Consensus 165 i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~------~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~ 238 (400)
||.||+|++ .......++++++++++.+ ++++.+++|+|+|+||+|||| ||+.+++ |+|||
T Consensus 79 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAa--------Dil~~~~---~~vpv 145 (322)
T 3tzl_A 79 FWLQSDVKE--VMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAA--------DILLFDT---RIVPV 145 (322)
T ss_dssp EEEGGGCTH--HHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHH--------HHHHTTC---SEEEC
T ss_pred EEECCcchh--HHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHH--------HHHHhCC---cEEEe
Confidence 999999985 3333455889999987754 345557899999999999999 7888887 69999
Q ss_pred ccCchhHHHHHHHHHhhhCC------CCCeeee---cccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCC
Q 015773 239 AIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 309 (400)
Q Consensus 239 G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~ 309 (400)
|.||+||+++|||+|+|+|. ++|..++ +++||+|+| +|||||.+| +|||+|+|++|++||++ |+|++
T Consensus 146 G~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~~n-~I~L~d~p~~i~~KI~~-a~td~ 221 (322)
T 3tzl_A 146 GKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDG--AKMSKSYQN-TIDIFSSEKTLKKQISS-IVTDS 221 (322)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTS--SBCCGGGTC-CCBSSCCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCC--CcCCCCCCC-ceecCCCHHHHHHHHHh-ccCCC
Confidence 99999999999999999985 5666554 799999998 899999998 99999999999999999 99999
Q ss_pred cchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--HHH
Q 015773 310 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVD 387 (400)
Q Consensus 310 ~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~--~~~ 387 (400)
..+. ..+||+++++++|+++|+ +++++++|+++|++|.+++++||+.||++|+++|+|+|++|++++++ +|+
T Consensus 222 ~~~~-----~~~~~~~~~v~~~~~~~~-~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~ 295 (322)
T 3tzl_A 222 TALE-----DPKDHENCNIFKIAKLFL-DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLK 295 (322)
T ss_dssp CCTT-----SCCCGGGCHHHHHHGGGC-CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHH
T ss_pred cccc-----CCCCCcchhHHHHHHHhC-ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHH
Confidence 7652 246899999999999996 68899999999999889999999999999999999999999999864 899
Q ss_pred HHHhc
Q 015773 388 AFMAV 392 (400)
Q Consensus 388 ~~~~~ 392 (400)
+++..
T Consensus 296 ~il~~ 300 (322)
T 3tzl_A 296 EILDF 300 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98865
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-64 Score=506.88 Aligned_cols=306 Identities=20% Similarity=0.288 Sum_probs=268.3
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 136 (400)
-.|++||++..+.+.+.|++.+++|+++++|+||+||| +||||||++.+..|++||++ |+.++++|||+||+++++
T Consensus 7 ~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g 84 (375)
T 2cyc_A 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLG 84 (375)
T ss_dssp HHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TCBCEEEECHHHHHHTTGGG
T ss_pred HHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHC-CCcEEEEecCcEEEcCCCCC
Confidence 46889998888888999999999988999999999998 89999955555555999996 788899999999999874
Q ss_pred CCHHHHHHHH-HHHH----HHHHHcCCCCCceEEEecccccccc-hHHHHHHHHhhcCHHHHHHhh---CCC--CCcccc
Q 015773 137 LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIG 205 (400)
Q Consensus 137 ~~~e~i~~~~-~~~~----~~ilA~G~dp~kt~i~~~s~~~~~~-~~~~~~~l~r~~t~~~~~~~~---g~~--~~~~~g 205 (400)
.+++++++|+ .+++ ++|+|||+||++++||.||+|+++. +|..+.++++++|+++|+++. ++. +++++|
T Consensus 85 ~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g 164 (375)
T 2cyc_A 85 GDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFA 164 (375)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChH
Confidence 6899999999 8888 8899999999999999999999774 778888999999999999876 332 458999
Q ss_pred ccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCC--------C-CCeeeecccccCCCCC-
Q 015773 206 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--------H-KPALIESSFFPALQGE- 275 (400)
Q Consensus 206 ~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~--------~-kp~~l~~~~lp~L~G~- 275 (400)
+|+||+|||| ||+.+++ +++|||.||+||+++|||+|+|+|+ . +|.++++++||+|+|+
T Consensus 165 ~f~YP~LQaa--------Dil~~~~---~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~ 233 (375)
T 2cyc_A 165 KLIYPMMQVA--------DIFYQGV---TIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPP 233 (375)
T ss_dssp HHHHHHHHHH--------HHHHTTC---SEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCS
T ss_pred HHHHHHHHHH--------HHHHhCC---CeecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcc
Confidence 9999999999 7888887 4899999999999999999999998 4 7888999999999996
Q ss_pred ---------------CCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-C-
Q 015773 276 ---------------TGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-D- 338 (400)
Q Consensus 276 ---------------~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~- 338 (400)
++|||||.|+++|||+|+|++|++||++ |||++. +++.+.+++|+++|+. +
T Consensus 234 ~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~-----------~~~~~~v~~~~~~~~f~~~ 301 (375)
T 2cyc_A 234 KWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR-----------EVRYNPVLDWVEYIIFREE 301 (375)
T ss_dssp SSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT-----------CCSSCHHHHHHHHTTTSSS
T ss_pred cccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC-----------CCCCChHHHHHHHHhcCCC
Confidence 4899999988899999999999999999 999974 3445667889988751 2
Q ss_pred -----------------hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhH--HHHHHH
Q 015773 339 -----------------DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD--EMVDAF 389 (400)
Q Consensus 339 -----------------~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~--~~~~~~ 389 (400)
.+++++|+++|.+|++++++||++||++|+++|+|+|+++++..+ +.++++
T Consensus 302 ~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~~~~~~~~~~ 371 (375)
T 2cyc_A 302 PTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371 (375)
T ss_dssp SCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCHHHHHHHHC
T ss_pred CcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHhc
Confidence 567999999999999999999999999999999999999995432 245444
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=8e-64 Score=501.15 Aligned_cols=295 Identities=22% Similarity=0.312 Sum_probs=261.0
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 136 (400)
-.|++|| +..+.+.+.|.+.+++|+++++|+||+||| +|||||+++++.. ++||++ |+.++++|||+||+++++
T Consensus 10 ~~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~-~~lQ~~-G~~~~~~iaD~~a~~~~ps~ 85 (364)
T 2cya_A 10 FNRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKV-KDLVEA-GVDFSVLEATWHAYINDKLG 85 (364)
T ss_dssp HHHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHH-HHHHHT-TCEEEEEECHHHHHHTTGGG
T ss_pred HHHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHH-HHHHHC-CCCEEEEEeCcchhhCCCCC
Confidence 4678999 667777788888889889999999999998 7999996666666 999996 888999999999999873
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-chHHHHHHHHhhcCHHHHHHhh---CCC---CCccccccch
Q 015773 137 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT---GEDHIGKVSF 209 (400)
Q Consensus 137 ~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~r~~t~~~~~~~~---g~~---~~~~~g~~~Y 209 (400)
.+++++++|+++++++|+|||+||++++||.||+|+.+ .+|..+.++++++|+++|+++. ++. .++++|+|+|
T Consensus 86 ~~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~Y 165 (364)
T 2cya_A 86 GDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIY 165 (364)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhh
Confidence 79999999999999999999999999999999999876 4788888999999999999874 322 3588999999
Q ss_pred hhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCC---------------
Q 015773 210 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG--------------- 274 (400)
Q Consensus 210 PllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G--------------- 274 (400)
|+|||| ||+.++++ +||||.||+||++++||+|+|+|+++|.++++++||+|+|
T Consensus 166 P~LQaa--------Dil~~~~~---~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~ 234 (364)
T 2cya_A 166 PLMQVS--------DIFYMDLD---IALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVL 234 (364)
T ss_dssp HHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC--------------
T ss_pred HHHHHh--------hHHhcCCC---EEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCcccccccccccccccc
Confidence 999999 78888874 8999999999999999999999999999999999999997
Q ss_pred CCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-----------------
Q 015773 275 ETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE----------------- 337 (400)
Q Consensus 275 ~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~----------------- 337 (400)
+|+|||||+++++|||+|+|++|++||++ |||++.. ++.+.+++|+++|+.
T Consensus 235 ~g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~~-----------~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~ 302 (364)
T 2cya_A 235 AEVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAKQ-----------VQGNPVLEIARYILFARDGFTLRVDRPAKYGG 302 (364)
T ss_dssp --CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTTC-----------CTTCHHHHHHHHTTTTSTTCCEECC-------
T ss_pred cccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCCC-----------CCCCcHHHHHHHHhcccccCceeeeccccccC
Confidence 57999999888899999999999999999 9999753 334557889988652
Q ss_pred --ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHH
Q 015773 338 --DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAA 380 (400)
Q Consensus 338 --~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~ 380 (400)
+.+++++|+++|.+|++++++||++||++|+++|+|+|++|++
T Consensus 303 ~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 303 PVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp -CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2358999999999999999999999999999999999999994
No 15
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=2.5e-63 Score=494.88 Aligned_cols=304 Identities=18% Similarity=0.298 Sum_probs=246.3
Q ss_pred hHHHhcCc--ccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC
Q 015773 59 HVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN 136 (400)
Q Consensus 59 ~~l~~Rgi--~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 136 (400)
-.+++||+ +++|++++.+| ++++++++|+||+||| +||||||++.+..|+|||++ |+.++++|||+||+++++
T Consensus 15 ~~l~~r~~~e~~~~~~L~~~L---~~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~-G~~~~~~i~D~~a~~~~~ 89 (348)
T 2j5b_A 15 LTQLLSIAEECETLDRLKQLV---DSGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIEC-GGQMIIYIADWFAKMNLK 89 (348)
T ss_dssp HHHHHTTCSEESCHHHHHHHH---HHTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTG
T ss_pred HHHHHcCcccccCHHHHHHHH---hcCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHc-CCcEEEEeccchhhhCCC
Confidence 46788997 44555555555 4578999999999997 99999954444445999996 889999999999999875
Q ss_pred --CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc-c-chHHHHHHHHhhcCHHHHHHh---hCCC--CCcccccc
Q 015773 137 --LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G-AFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKV 207 (400)
Q Consensus 137 --~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~-~~~~~~~~l~r~~t~~~~~~~---~g~~--~~~~~g~~ 207 (400)
.+++++++++++++++|+|||+||+++.||.||+|.. + .+|..+..+++++++++|+++ .++. +++|+|+|
T Consensus 90 ~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f 169 (348)
T 2j5b_A 90 MNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQI 169 (348)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHH
Confidence 6999999999999999999999999999999999952 3 677777899999999999974 3432 46799999
Q ss_pred chhhhhcCCCCCCCccccccc---CCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCC
Q 015773 208 SFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 284 (400)
Q Consensus 208 ~YPllQaad~~~~~~~dil~~---~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~ 284 (400)
+||+|||| ||+.+ ++ +++|||.||+||++++||+|+|+|+..|.++++++||+|+|+++|||||.|
T Consensus 170 ~YP~lQaa--------Dil~~~~~~~---~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~ 238 (348)
T 2j5b_A 170 FYPCMQAA--------DVFELVPEGI---DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDP 238 (348)
T ss_dssp CHHHHHHH--------HHHHSSTTCC---SEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCG
T ss_pred hhHHHHHH--------HHHHHhcCCC---cEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCC
Confidence 99999999 67777 55 589999999999999999999999988999999999999765589999998
Q ss_pred CCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhcc-----------CChHHHHHHHHHHhcCC
Q 015773 285 NSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL-----------EDDAELEHIKKEYGAGG 353 (400)
Q Consensus 285 nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~-----------~~~~eleei~~~~~~g~ 353 (400)
|++|||+|+|++|++||++ |+|++.. ++ +.++.|+.++. .+.+++++|+++|+ |
T Consensus 239 ~~~I~L~d~p~~i~kKI~k-a~td~~~-----------~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~-~- 303 (348)
T 2j5b_A 239 QGAIFMDDTEQEVSEKISR-AYCTDET-----------FD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFS-S- 303 (348)
T ss_dssp GGSCBTTCCHHHHHHHHHH-SCCCSSS-----------TT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHT-T-
T ss_pred CCeEeecCCHHHHHHHHhc-ccCCCCC-----------CC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHc-c-
Confidence 7799999999999999999 9999753 33 34456555431 14578999999999 5
Q ss_pred CChHHHHHHHHHHHHHHhhhHHHHHHHhh----HHHHHHHHhcC
Q 015773 354 MLTGEVKQRLAKVLTELVERHQVARAAVT----DEMVDAFMAVR 393 (400)
Q Consensus 354 ~~~~~lK~~La~~i~~~l~~~~~~~~~~~----~~~~~~~~~~~ 393 (400)
+++++||++||++|+++++|+|+++++.. .+.|++|+..|
T Consensus 304 ~~~~~~K~~la~~l~~~l~pir~~~~~~~~~~~~~~v~~~~~~~ 347 (348)
T 2j5b_A 304 MNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQPS 347 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHTCC--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhccCC
Confidence 89999999999999999999999976442 34777777554
No 16
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-63 Score=492.49 Aligned_cols=287 Identities=21% Similarity=0.238 Sum_probs=253.1
Q ss_pred CceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015773 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 163 (400)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 163 (400)
...++|+|++||| +|||||++|++..|++||++ |+.++++|||+||++++..+++++++++++++++|+|||+||+++
T Consensus 11 ~~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~ 88 (340)
T 2g36_A 11 HHMRILSGMRPTG-KLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKS 88 (340)
T ss_dssp -CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTS
T ss_pred CCCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 3578999999999 89999999999888999996 778888899999999766778889999999999999999999999
Q ss_pred EEEecccccccchHHHHHHHHhhcCHHHHHHhhC---------CCCCccccccchhhhhcCCCCCCCcccccccCCCCce
Q 015773 164 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG---------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 234 (400)
Q Consensus 164 ~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g---------~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~ 234 (400)
+||.||+|++ +......+++.+|++++.+... ..+++++|+|+||+|||| ||+.+++ |
T Consensus 89 ~if~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAa--------Dil~~~~---~ 155 (340)
T 2g36_A 89 VIFVQSGVKE--HAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAA--------DILIYKA---E 155 (340)
T ss_dssp EEEEGGGCTH--HHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHH--------HHHTTTC---S
T ss_pred EEEECCchHH--HHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHh--------hHHHhCC---C
Confidence 9999999975 3333455888889988776532 234789999999999999 7888887 6
Q ss_pred eeccccCchhHHHHHHHHHhhhCC------CCCeee--ecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccc
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGY------HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 306 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~------~kp~~l--~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~ 306 (400)
+||||.||+||++++||+|+|+|. ++|..+ ++++||+|+| +|||||.+| +|||+|+|++|++||++ |+
T Consensus 156 ~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG--~KMSKS~~n-~I~L~dsp~~i~~Ki~~-a~ 231 (340)
T 2g36_A 156 GVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDG--RKMSKSYGN-IINLEISEKELEQTILR-MM 231 (340)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTS--SCCCGGGTC-CCBTTCCHHHHHHHHHT-CC
T ss_pred EEEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCc--cccCCCCCC-eEeeeCCHHHHHHHHHh-CC
Confidence 899999999999999999999872 567644 4799999997 599999998 89999999999999999 99
Q ss_pred cCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--
Q 015773 307 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-- 384 (400)
Q Consensus 307 t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~-- 384 (400)
|++.. +++..+++|++|++++|+++|+.+.+++++|+++|.+|.+++++||+.||++|+++|+|+|+||++++++
T Consensus 232 td~~~---~~~~~~~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~ 308 (340)
T 2g36_A 232 TDPAR---VRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPH 308 (340)
T ss_dssp CCTTC---SSTTSCCCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCccc---ccccCCCCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 99854 5667789999999999999997678888999999999989999999999999999999999999999986
Q ss_pred HHHHHHhc
Q 015773 385 MVDAFMAV 392 (400)
Q Consensus 385 ~~~~~~~~ 392 (400)
+|++++..
T Consensus 309 ~~~~il~~ 316 (340)
T 2g36_A 309 YVDDVIME 316 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89998864
No 17
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=7.2e-64 Score=496.21 Aligned_cols=286 Identities=17% Similarity=0.236 Sum_probs=249.6
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
.++|+|++||| .||||||+|++..|++||+. +.++|+|||+||+++ ..+++++++++++++++|+|||+||+|++|
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 82 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGALRQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTL 82 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTGGGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CEEEeCcCCCC-cccHHHHHHHHHHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEE
Confidence 47999999999 69999999999888899995 567888999999996 689999999999999999999999999999
Q ss_pred Eeccccccc--chHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc
Q 015773 166 FSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238 (400)
Q Consensus 166 ~~~s~~~~~--~~~~-----~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~ 238 (400)
|.||+|+++ .+|. .+.++.|++++++...+++ +++++|+|+||+|||| ||+.+++ |+|||
T Consensus 83 ~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaa--------Dil~~~a---d~vpv 149 (341)
T 3sz3_A 83 FVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAA--------DILLYGA---HQVPV 149 (341)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHH--------HHHTTTC---SEECC
T ss_pred EeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHH--------HHHHcCC---CEEEe
Confidence 999999864 2232 2456667777766665553 5799999999999999 7888887 69999
Q ss_pred ccCchhHHHHHHHHHhhhCC---------CCCeeee---cccccCCCCCCCcCCCCCC--CCeeeecCcHHHHHHHhhcc
Q 015773 239 AIDQDPYFRMTRDVAPRIGY---------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKINKY 304 (400)
Q Consensus 239 G~DQd~~~~l~rdla~r~~~---------~kp~~l~---~~~lp~L~G~~~KMSKS~~--nsaI~L~D~~~~i~~KI~k~ 304 (400)
|.||+||+++|||+|+|||. +.|..+. +++||||+++++|||||+| +|+|||+|+|++|++||++
T Consensus 150 G~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~- 228 (341)
T 3sz3_A 150 GSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK- 228 (341)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-
Confidence 99999999999999999972 2454433 5799999754579999998 6899999999999999999
Q ss_pred cccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH
Q 015773 305 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE 384 (400)
Q Consensus 305 A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~ 384 (400)
|+||+..+.+++++.+++|++|++++|+.+| +++++++|+++|+ |.+++++||+.||+.|+++|+|+|+||+++.++
T Consensus 229 a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~ 305 (341)
T 3sz3_A 229 AQTDAETPPRIAYDVENKAGIANLMGLYSAA--TGKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRND 305 (341)
T ss_dssp CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCCCCCcccccCCCCCcchhHHHHHHHHc--CCccHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999988777888889999999999999999 5678999999999 668999999999999999999999999999854
Q ss_pred --HHHHHHhc
Q 015773 385 --MVDAFMAV 392 (400)
Q Consensus 385 --~~~~~~~~ 392 (400)
+|++++..
T Consensus 306 ~~~l~~il~~ 315 (341)
T 3sz3_A 306 REYLNSVMRD 315 (341)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 89998865
No 18
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=8.4e-63 Score=491.38 Aligned_cols=290 Identities=26% Similarity=0.292 Sum_probs=252.0
Q ss_pred CCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 015773 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 162 (400)
Q Consensus 83 g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~k 162 (400)
++++++|+||+||| .||||||+|++..|++||++ +.++++|||+|+++.+..+++++++|+++++++|+|||+||++
T Consensus 20 ~~~~~vysG~~PTG-~lHLGn~~g~l~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k 96 (351)
T 1yi8_B 20 PARPRVLTGDRPTG-ALHLGHLAGSLQNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQK 96 (351)
T ss_dssp -CCSEEEEEECCSS-CCBHHHHHHTHHHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTT
T ss_pred CCCcEEEEeeCCCC-CccHHHHHHHHHHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhh
Confidence 46789999999998 59999999999777789986 4567788999999977799999999999999999999999999
Q ss_pred eEEEecccccccch--H-----HHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCcee
Q 015773 163 TFIFSDFDYVGGAF--Y-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 235 (400)
Q Consensus 163 t~i~~~s~~~~~~~--~-----~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~ 235 (400)
++||.||+|.++.- | ..+.++.|+.++++..++.||.+++++|+|+||+|||| ||+.+++ |+
T Consensus 97 ~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAa--------Dil~~~~---~~ 165 (351)
T 1yi8_B 97 TTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAA--------DIAAFGA---TL 165 (351)
T ss_dssp EEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHH--------HHHHHTC---SE
T ss_pred cEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHh--------hHHhcCC---CE
Confidence 99999999985311 1 01344445555555555567778899999999999999 7888887 58
Q ss_pred eccccCchhHHHHHHHHHhhhC------CCCCeee--ecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhccccc
Q 015773 236 IPCAIDQDPYFRMTRDVAPRIG------YHKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS 307 (400)
Q Consensus 236 vp~G~DQd~~~~l~rdla~r~~------~~kp~~l--~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t 307 (400)
||||.||+||++++||+|+|+| +++|..+ ++++||+|+| ++|||||.+| +|||+|+|++|++||++ |+|
T Consensus 166 vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~t 242 (351)
T 1yi8_B 166 VPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGDSADEVARKVMG-MYT 242 (351)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTS-SSCCCTTTTC-CCBTTCCHHHHHHHHHT-CCC
T ss_pred EEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCC-ccccCCCCCC-eecCCCCHHHHHHHHHh-cCC
Confidence 9999999999999999999986 4678765 3799999997 3699999999 99999999999999999 999
Q ss_pred CCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--H
Q 015773 308 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--M 385 (400)
Q Consensus 308 ~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~--~ 385 (400)
++. ++++..|+||+.++++.|+++|+.+.+++++|+++|.+|.++|++||+.||++|+++|+|+|++|++++++ +
T Consensus 243 d~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~ 319 (351)
T 1yi8_B 243 DPG---HLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDA 319 (351)
T ss_dssp CTT---CCSTTSCCCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred Ccc---cccccCCCCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHH
Confidence 985 45677889999999999999998778889999999999999999999999999999999999999999874 8
Q ss_pred HHHHHhc
Q 015773 386 VDAFMAV 392 (400)
Q Consensus 386 ~~~~~~~ 392 (400)
|++++..
T Consensus 320 l~~il~~ 326 (351)
T 1yi8_B 320 VLRFVTE 326 (351)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988864
No 19
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-62 Score=491.94 Aligned_cols=304 Identities=15% Similarity=0.190 Sum_probs=258.7
Q ss_pred hhHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-
Q 015773 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN- 136 (400)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 136 (400)
...+++||+.. +.+.+.|.+.+++|+++++|+||+||| +|||||.+.....+++||++ |+.++++|||+||+++++
T Consensus 30 ~~~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~-G~~~~~lIaD~ha~i~d~~ 106 (373)
T 3vgj_A 30 ILNDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSN-GCTFIFWIADWFAHLNNKM 106 (373)
T ss_dssp HHHHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-TCEEEEEECHHHHHHTTGG
T ss_pred HHHHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHC-CCcEEEEEecceeEecCCC
Confidence 35678899864 344556666667788999999999999 89999976444334899996 889999999999999763
Q ss_pred -CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc-cc--chHHHHHHHHhhcCHHHHHHhh---CCC--CCcccccc
Q 015773 137 -LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIGKV 207 (400)
Q Consensus 137 -~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~-~~--~~~~~~~~l~r~~t~~~~~~~~---g~~--~~~~~g~~ 207 (400)
.+.+++++++.++++.|+|+|+||++++||.||+|+ ++ .+|..+.++++++|+++|+++. ++. +++++|+|
T Consensus 107 ~~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f 186 (373)
T 3vgj_A 107 SGDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQI 186 (373)
T ss_dssp GGCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHH
Confidence 789999999999999999999999999999999998 33 4777788899999999999864 332 47999999
Q ss_pred chhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCC-CCeeeecccccCCCCCCCcCCCCCCCC
Q 015773 208 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNS 286 (400)
Q Consensus 208 ~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSKS~~ns 286 (400)
+||+|||| ||+.++++ ++|||.||+||++++||+|+|+|.. +|.++++++||+|+++.+|||||.|||
T Consensus 187 ~YPlLQaa--------Dil~l~ad---~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~ 255 (373)
T 3vgj_A 187 LYPCMQCA--------DIFFLNVD---ICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENS 255 (373)
T ss_dssp HHHHHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTC
T ss_pred HHHHHHHh--------cccccCCc---EEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCC
Confidence 99999999 78889885 7999999999999999999999986 788899999999943247999999988
Q ss_pred eeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccch----HHHHHhhcc-C---------ChHHHHHHHHHHhcC
Q 015773 287 AIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDI----PVKYLSFFL-E---------DDAELEHIKKEYGAG 352 (400)
Q Consensus 287 aI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v----~~~~l~~f~-~---------~~~eleei~~~~~~g 352 (400)
+|||+|+|++|++||++ |||++.. .++||.++. ++.++..|. + +++++++|+++|.+|
T Consensus 256 ~I~L~D~p~~i~~KI~k-A~td~~~-------~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g 327 (373)
T 3vgj_A 256 AIFMDDSESDVNRKIKK-AYCPPNV-------IENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNG 327 (373)
T ss_dssp CCBTTCCHHHHHHHHHH-SCCCTTC-------CTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTT
T ss_pred eeecCCCHHHHHHHHHh-CcCCCCC-------CCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcC
Confidence 99999999999999999 9999753 357887653 456665553 1 246899999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015773 353 GMLTGEVKQRLAKVLTELVERHQVARAAVTD 383 (400)
Q Consensus 353 ~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~ 383 (400)
+++|++||++||+.|+++|+|+|+++++..+
T Consensus 328 ~l~~~dlK~~lae~i~~~l~Pire~~~~~~~ 358 (373)
T 3vgj_A 328 FIHPLDLKDNVAMYINKLLQPVRDHFQNNIE 358 (373)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999999997543
No 20
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.4e-62 Score=485.82 Aligned_cols=286 Identities=20% Similarity=0.197 Sum_probs=242.4
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCccccccc-CCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTF 164 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~-~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 164 (400)
.++|+||+||| +|||||++|++..|++||+++++.++++|||+|+++.+ ..+++++++++++++++|+|||+||++++
T Consensus 2 ~~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~ 80 (337)
T 2el7_A 2 KRVLSGIQPSG-EIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVT 80 (337)
T ss_dssp CCEEEEECSCS-CCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred CEEEEeeCCCC-cccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheE
Confidence 37999999998 69999999999888999997327788899999999976 38899999999999999999999999999
Q ss_pred EEecccccccchHHHHHHHHhhcCHHHHHHhhC------CCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc
Q 015773 165 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238 (400)
Q Consensus 165 i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g------~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~ 238 (400)
||.||+|+++ ......+++++++++|.+... ..+++|+|+|+||+|||| ||+.+++ |+|||
T Consensus 81 i~~qS~~~~~--~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaa--------Dil~~~~---~lvp~ 147 (337)
T 2el7_A 81 LFVQSHVPEH--TELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAA--------DILIYKA---DTVPV 147 (337)
T ss_dssp EEEGGGSTHH--HHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHH--------HHHHTTC---CEEEC
T ss_pred EEEcCcchhh--HHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHh--------hHHhhCC---cEEEc
Confidence 9999999852 222334888888888776532 346899999999999999 7888887 68999
Q ss_pred ccCchhHHHHHHHHHhhhC------CCCCeeeec---ccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCC
Q 015773 239 AIDQDPYFRMTRDVAPRIG------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 309 (400)
Q Consensus 239 G~DQd~~~~l~rdla~r~~------~~kp~~l~~---~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~ 309 (400)
|.||+||++++||+|+|+| +++|..+++ ++||+|+| .+|||||.+| +|||+|+|++|++||++ |+|++
T Consensus 148 G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~n-~I~L~d~p~~i~~Ki~~-a~td~ 224 (337)
T 2el7_A 148 GEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLLEPEESIWQKIQH-LPDDP 224 (337)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTTC-CCBSSSCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCC-ccccCCCCCC-eeeCcCCHHHHHHHHHh-CCCCC
Confidence 9999999999999999985 578887765 89999998 5899999999 99999999999999999 99998
Q ss_pred cchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--HHH
Q 015773 310 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVD 387 (400)
Q Consensus 310 ~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~--~~~ 387 (400)
..++++ .+++|++|++++|+++|+ +++++++|+++|.+|.++++++|+.||++|+++++|+|++|++++++ +|+
T Consensus 225 ~~~~~~---~~~~p~~~~v~~~~~~~t-~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~ 300 (337)
T 2el7_A 225 QRIRLS---DPGDPERTILFTYLSYFA-PKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVM 300 (337)
T ss_dssp ----------------CHHHHHHHHHS-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cccccc---CCCCCchhhHHHHHHHcC-ChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHH
Confidence 766543 577899999999999994 34699999999999889999999999999999999999999999875 899
Q ss_pred HHHhc
Q 015773 388 AFMAV 392 (400)
Q Consensus 388 ~~~~~ 392 (400)
+++..
T Consensus 301 ~il~~ 305 (337)
T 2el7_A 301 DALLE 305 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 21
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=1.1e-62 Score=487.88 Aligned_cols=286 Identities=17% Similarity=0.263 Sum_probs=246.0
Q ss_pred ceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 015773 85 KFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 164 (400)
Q Consensus 85 ~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~ 164 (400)
+.++|+|++||| .||||||+|++..|++||+. +.++|+|||+||+++ ..+++++++++++++++|+|||+||+|++
T Consensus 15 ~~~i~sG~~PTG-~lHLGh~vg~l~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~ 90 (346)
T 3n9i_A 15 KPIVFSGAQPSG-ELTIGNYMGALRQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKST 90 (346)
T ss_dssp CCEEEEEECSCS-CCBHHHHHHTHHHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred CCEEEECcCCCC-cccHHHHHHHHHHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 458999999999 59999999999887889984 678888999999986 58999999999999999999999999999
Q ss_pred EEecccccccc--hHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeec
Q 015773 165 IFSDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 237 (400)
Q Consensus 165 i~~~s~~~~~~--~~~-----~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp 237 (400)
||.||+|.++. +|. .+.++.|+.++++...+. .+++++|+|+||+|||| ||+.+++ |+||
T Consensus 91 if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAa--------Dil~~~a---d~vp 157 (346)
T 3n9i_A 91 IFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARY--AENINAGLFDYPVLMAA--------DILLYQT---NQVP 157 (346)
T ss_dssp EEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHH--------HHHTTTC---SEEC
T ss_pred EEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHH--------HHHHhCc---eEEE
Confidence 99999998642 232 234556666665554443 25789999999999999 7888887 6999
Q ss_pred cccCchhHHHHHHHHHhhhCC------CCCeeee---cccccCCCCCCCcCCCCCCC--CeeeecCcHHHHHHHhhcccc
Q 015773 238 CAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF 306 (400)
Q Consensus 238 ~G~DQd~~~~l~rdla~r~~~------~kp~~l~---~~~lp~L~G~~~KMSKS~~n--saI~L~D~~~~i~~KI~k~A~ 306 (400)
||.||+||+++|||+|+|+|. +.|..+. +++||||+++++|||||+|| |+|||+|+|++|++||++ ||
T Consensus 158 vG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A~ 236 (346)
T 3n9i_A 158 VGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-AM 236 (346)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-CC
T ss_pred eccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-Cc
Confidence 999999999999999999982 4565554 47999997645799999996 899999999999999999 99
Q ss_pred cCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--
Q 015773 307 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-- 384 (400)
Q Consensus 307 t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~-- 384 (400)
||+..+.++++..+++|+++++++|+..| +++++++|+++|++| ++|+||+.||+.|+++|+|+|+||++++++
T Consensus 237 Td~~~~~~~~~~~~~~p~v~~l~~~~~~~--~~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~pirer~~~~~~~~~ 312 (346)
T 3n9i_A 237 TDSDEPALIRYDVEKKAGVSNLLDILSGV--TGQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLSELQERYRTYREDEA 312 (346)
T ss_dssp CCCCSSCCCCCCTTTCHHHHHHHHHHHHH--HCCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCCccccCCCCCCCChhHHHHHHHhc--CCccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 99987656677789999999999999988 567899999999876 699999999999999999999999999864
Q ss_pred HHHHHHhc
Q 015773 385 MVDAFMAV 392 (400)
Q Consensus 385 ~~~~~~~~ 392 (400)
+|++++..
T Consensus 313 ~l~~il~~ 320 (346)
T 3n9i_A 313 LLQDVMRE 320 (346)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89998865
No 22
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=5.4e-63 Score=487.89 Aligned_cols=290 Identities=16% Similarity=0.206 Sum_probs=252.3
Q ss_pred hhHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-
Q 015773 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN- 136 (400)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 136 (400)
.+.|++||++++|+|++.|++.++ ++++++|+||+|||+||||||+++++.+ +|||++ |+.++++|||+||+++++
T Consensus 7 ~~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~-~~lQ~~-g~~~~~~i~D~~a~~~dp~ 83 (322)
T 2yxn_A 7 IKQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCL-KRFQQA-GHKPVALVGGATGLIGDPS 83 (322)
T ss_dssp HHHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHH-HHHHHT-TCEEEEEECTTGGGTCCCT
T ss_pred HHHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHH-HHHHHc-CCcEEEEEccceeeecCCC
Confidence 478999999999999999999998 5789999999999977999999987777 999997 677788899999998643
Q ss_pred --------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEEecccccccchHHHHHH-HHhhcCHHHHHH------hhCC
Q 015773 137 --------LSVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVG------IFGF 198 (400)
Q Consensus 137 --------~~~e~i~~~~---~~~~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~r~~t~~~~~~------~~g~ 198 (400)
++.+++++|+ ++++++++|||+||++++||.||+|+.+..+..+++ +++++++++|.+ ++++
T Consensus 84 g~~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~ 163 (322)
T 2yxn_A 84 FKAAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNR 163 (322)
T ss_dssp TCSSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHC
T ss_pred CcccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhcc
Confidence 3999999999 888899999999999999999999987655556665 777777766654 4553
Q ss_pred -CCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc-ccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCC
Q 015773 199 -TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGET 276 (400)
Q Consensus 199 -~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~-G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~ 276 (400)
.+++|+|+|+||+|||| ||+.+..+++|.||+ |.||+||++++||+|+|+|..+|..++.++||+|+|
T Consensus 164 ~~~~is~g~f~YP~LQaa--------Dil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG-- 233 (322)
T 2yxn_A 164 EDQGISFTEFSYNLLQGY--------DFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADG-- 233 (322)
T ss_dssp TTCCCCHHHHTHHHHHHH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--
T ss_pred CCCCccchhhhHHHHHHH--------HHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCc--
Confidence 35789999999999999 788773223466655 999999999999999999998899999999999997
Q ss_pred CcCCCCCCCCeeeecC---cHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcC
Q 015773 277 GKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAG 352 (400)
Q Consensus 277 ~KMSKS~~nsaI~L~D---~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g 352 (400)
+|||||.+| +|||+| +|+++++||++ + +.+.+++|+++|+. +++++++|+++|++|
T Consensus 234 ~KMSKS~~n-~I~L~d~~tsp~~~~~ki~~-~------------------~d~~v~~~l~~~~~~~~~~i~~l~~~~~~g 293 (322)
T 2yxn_A 234 TKFGKTEGG-AVWLDPKKTSPYKFYQFWIN-T------------------ADADVYRFLKFFTFMSIEEINALEEEDKNS 293 (322)
T ss_dssp CBTTEETTE-ECBSSTTTSCHHHHHHHHHT-C------------------CHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCC-eeeccCCCCCHHHHHHHHhC-C------------------CcccHHHHHHHHHcCCHHHHHHHHHHHHcC
Confidence 799999998 999999 99999999998 3 12456899999875 899999999999998
Q ss_pred CCChHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015773 353 GMLTGEVKQRLAKVLTELVERHQVARAAV 381 (400)
Q Consensus 353 ~~~~~~lK~~La~~i~~~l~~~~~~~~~~ 381 (400)
. +++++|+.||++|++++||+++++++.
T Consensus 294 ~-~~~~~K~~La~~i~~~l~~~~~~~~a~ 321 (322)
T 2yxn_A 294 G-KAPRAQYVLAEQVTRLVHGEEGLQAAK 321 (322)
T ss_dssp S-SCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C-CHHHHHHHHHHHHHHHhCCHHHHHHhh
Confidence 6 999999999999999999999998753
No 23
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2.6e-62 Score=483.90 Aligned_cols=282 Identities=21% Similarity=0.277 Sum_probs=243.4
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
.++|+||+||| +|||||++|++..|.+||+ |+.++++|||+||+++ +.+++++++|+++++++|+|||+||++++|
T Consensus 2 ~~vysG~~PTG-~lHlGn~vg~l~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 77 (328)
T 1i6k_A 2 KTIFSGIQPSG-VITIGNYIGALRQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQATL 77 (328)
T ss_dssp CEEEEEECCCS-CCBHHHHHHTHHHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred CEEEEeeCCCC-cccHHHHHHHHHHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 37999999998 8999999999988888998 6677888999999997 789999999999999999999999999999
Q ss_pred Eecccccccc--hHH-----HHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceeecc
Q 015773 166 FSDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238 (400)
Q Consensus 166 ~~~s~~~~~~--~~~-----~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~ 238 (400)
|.||+|.++. .|. .+.++.|+.++++..++ .+++++|+|+||+|||| ||+.+++ ++|||
T Consensus 78 f~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~---~~~~~~g~f~YPvLQaa--------Dil~~~~---~~vpv 143 (328)
T 1i6k_A 78 FIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG---KEAVSAGLLTYPPLMAA--------DILLYNT---DIVPV 143 (328)
T ss_dssp EEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT---CSSCCHHHHTHHHHHHH--------HHHTTTC---SEEEC
T ss_pred EecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc---cCCCCchhhccHHHHHH--------HHHHhCC---CEEec
Confidence 9999997531 121 13445555555444332 26899999999999999 7888887 58999
Q ss_pred ccCchhHHHHHHHHHhhhC------CCCCeeee---cccccCCCCCCCcCCCCCCCCe--eeecCcHHHHHHHhhccccc
Q 015773 239 AIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKINKYAFS 307 (400)
Q Consensus 239 G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~G~~~KMSKS~~nsa--I~L~D~~~~i~~KI~k~A~t 307 (400)
|.||+||++++||+|+|+| +++|..+. +++||+|+|+++|||||.+|++ |||+|+|++|++||++ |+|
T Consensus 144 G~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~t 222 (328)
T 1i6k_A 144 GEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVT 222 (328)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CCC
T ss_pred ccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cCC
Confidence 9999999999999999998 56777664 6999999997789999999967 9999999999999999 999
Q ss_pred CCcchhHhhhhcCCCcccchHHHHHhhccCChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhHH-HH
Q 015773 308 GGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDE-MV 386 (400)
Q Consensus 308 ~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~-~~ 386 (400)
++..++.++ ++++|++|++++|+++| +++++++|+++|. | +++++||+.||++|+++++|+|++|++++++ .|
T Consensus 223 d~~~~~~~~--~~~~p~v~~~~~~~~~~--~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~ 296 (328)
T 1i6k_A 223 DSEGTIRYD--KEAKPGISNLLNIYSTL--SGQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQERYHHWMESEEL 296 (328)
T ss_dssp CSSCCCCCB--TTTBHHHHHHHHHHHHH--HCCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTHH
T ss_pred CCccccccC--CCCCcchhhHHHHHHHC--CchhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChhH
Confidence 987655433 36789999999999999 5678999999999 8 8999999999999999999999999999864 38
Q ss_pred HHHHhc
Q 015773 387 DAFMAV 392 (400)
Q Consensus 387 ~~~~~~ 392 (400)
++++..
T Consensus 297 ~~il~~ 302 (328)
T 1i6k_A 297 DRVLDE 302 (328)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 24
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3.6e-62 Score=486.31 Aligned_cols=287 Identities=19% Similarity=0.234 Sum_probs=242.4
Q ss_pred CceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 015773 84 EKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 163 (400)
Q Consensus 84 ~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt 163 (400)
.++++||||+||| +|||||+++++..|++||+ ++.++++|||+||++++ .+++++++++++++++|+|+|+||+++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k~ 78 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVMQSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQKA 78 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTGGGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTTE
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHHHHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhHe
Confidence 3578999999998 8999999999988888998 56788889999999965 899999999999999999999999999
Q ss_pred EEEecccccccc--hHH-----HHHHHHhhcCHHHHHHhhCC----CCCccccccchhhhhcCCCCCCCcccccccCCCC
Q 015773 164 FIFSDFDYVGGA--FYK-----NMVKVAKCVTYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL 232 (400)
Q Consensus 164 ~i~~~s~~~~~~--~~~-----~~~~l~r~~t~~~~~~~~g~----~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~ 232 (400)
+||.||+|+++. .|. .+.++.|+.++++..++.+| .+++++|+|+||+|||| ||+.+++
T Consensus 79 ~if~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaa--------Dil~~~a-- 148 (348)
T 2yy5_A 79 CLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAG--------DILLYQP-- 148 (348)
T ss_dssp EEEEGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHH--------HHHTTCC--
T ss_pred EEEECCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHH--------HHHHhCc--
Confidence 999999997531 111 12333444433332222221 45799999999999999 7888887
Q ss_pred ceeeccccCchhHHHHHHHHHhhhC------CCCCeeee---cccccCCCCCCCcCCCCCCCC--eeeecCcHHHHHHHh
Q 015773 233 RCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIKNKI 301 (400)
Q Consensus 233 ~~~vp~G~DQd~~~~l~rdla~r~~------~~kp~~l~---~~~lp~L~G~~~KMSKS~~ns--aI~L~D~~~~i~~KI 301 (400)
|+||||.||+||++++||+|+|+| +++|..++ +++||||+|+++|||||.+|+ +|||+|+|++|++||
T Consensus 149 -~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI 227 (348)
T 2yy5_A 149 -DIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKI 227 (348)
T ss_dssp -SEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHH
T ss_pred -cEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHH
Confidence 589999999999999999999997 56888877 699999999878999999995 999999999999999
Q ss_pred hcccccCCcchhHhhhhcCCCcccchHHHHHhhccCChHHHH---------HHHHHHhcCCCChHHHHHHHHHHHHHHhh
Q 015773 302 NKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELE---------HIKKEYGAGGMLTGEVKQRLAKVLTELVE 372 (400)
Q Consensus 302 ~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~~~~ele---------ei~~~~~~g~~~~~~lK~~La~~i~~~l~ 372 (400)
++ |+|++..+++++ .+++|+++++++|+++| ++++++ +|+++|. | +++++||+.||++|+++++
T Consensus 228 ~~-a~td~~~~~~~~--~~~~p~v~~~~~~~~~~--~~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~ 300 (348)
T 2yy5_A 228 RQ-ATTDSFNKIRFA--SKTQPGVTNMLTILKAL--LKEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNALTEATVNLLV 300 (348)
T ss_dssp HT-CCCCSSCCCSCC--TTTCHHHHHHHHHHHHH--TTSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHHHHHHHHHHH
T ss_pred Hh-CCCCCccccccC--CCCCCchhhHHHHHHhC--ChHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHH
Confidence 99 999997655544 47789999999999999 668899 9999999 7 8999999999999999999
Q ss_pred hHHHHHHHhhHHHHHHHHhc
Q 015773 373 RHQVARAAVTDEMVDAFMAV 392 (400)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~ 392 (400)
|+|++|+++.+..|+++|..
T Consensus 301 pire~~~~~~d~~~~~~l~~ 320 (348)
T 2yy5_A 301 NIQRKREQISREQVFNCLQA 320 (348)
T ss_dssp HHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHH
Confidence 99999999955459988865
No 25
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.1e-60 Score=468.91 Aligned_cols=292 Identities=23% Similarity=0.336 Sum_probs=259.2
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCC
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLS 138 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~ 138 (400)
-.+++||++..+++ +.|.+.+++++++++|+||+||| +|||||+++++.. ++||++ |+.++++|||+|+++.+..+
T Consensus 7 ~~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~-~~lq~~-g~~~~~~i~D~~a~~~d~~~ 82 (323)
T 2cyb_A 7 LRLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKL-MDLQEA-GFEIIVLLADIHAYLNEKGT 82 (323)
T ss_dssp HHHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHH-HHHHHT-TCEEEEEECHHHHHHTTCCC
T ss_pred HHHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHH-HHHHHC-CCcEEEEECCceeEcCCCCC
Confidence 46789999888874 77777788788999999999998 7999998877666 999996 78899999999999987569
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-chHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchhhhh
Q 015773 139 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQ 213 (400)
Q Consensus 139 ~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~r~~t~~~~~~~~---g~~-~~~~~g~~~YPllQ 213 (400)
++++++++++++++|+|||+||+++.||.||+|..+ .++..+..+++++|+++|.++. ++. ++.++|+|+||+||
T Consensus 83 ~~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lq 162 (323)
T 2cyb_A 83 FEEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQ 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHH
Confidence 999999999999999999999999999999999865 5677778899999999999875 433 34699999999999
Q ss_pred cCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCc
Q 015773 214 AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293 (400)
Q Consensus 214 aad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~ 293 (400)
|| |++.++++ +||+|.||+||++++|++|+|+|+++|..+++++||+|+| +||||| ++|+|||+|+
T Consensus 163 aa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~ 228 (323)
T 2cyb_A 163 AL--------DIAHLGVD---LAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDP 228 (323)
T ss_dssp HH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCC
T ss_pred HH--------HHHhcCCC---EEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCC--CcccCC-cCceeCCCCC
Confidence 99 67888874 8999999999999999999999999999999999999997 899999 5569999999
Q ss_pred HHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhcc----------------C--ChHHHHHHHHHHhcCCCC
Q 015773 294 AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL----------------E--DDAELEHIKKEYGAGGML 355 (400)
Q Consensus 294 ~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~----------------~--~~~eleei~~~~~~g~~~ 355 (400)
|++|++||++ |+|++. +++.|++++|+++|+ . +.+++++|+++|++|+++
T Consensus 229 p~~i~~Ki~~-a~td~~-----------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~ 296 (323)
T 2cyb_A 229 PEEVERKIRK-AYCPAG-----------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLH 296 (323)
T ss_dssp HHHHHHHHHT-SCCCTT-----------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHh-cCCCCC-----------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCC
Confidence 9999999999 999874 344577889999874 1 345899999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHH
Q 015773 356 TGEVKQRLAKVLTELVERHQVARAA 380 (400)
Q Consensus 356 ~~~lK~~La~~i~~~l~~~~~~~~~ 380 (400)
|++||+.||+.|+++++|+|++|++
T Consensus 297 ~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 297 PLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999865
No 26
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.3e-61 Score=488.03 Aligned_cols=289 Identities=16% Similarity=0.176 Sum_probs=256.7
Q ss_pred hhHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-
Q 015773 58 PHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN- 136 (400)
Q Consensus 58 ~~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 136 (400)
...|++||++++|++.+.|.+.+++ +++++|+||+|||++|||||+++++.+ +|||++ |+.++++|||+|+++.++
T Consensus 6 ~~~L~~RG~~~~~~~~e~L~~~L~~-~~~~iy~G~dPTg~sLHLGhlv~l~~l-~~lQ~~-G~~~i~lIgD~ta~igdps 82 (432)
T 2jan_A 6 LDELSWRGLIAQSTDLDTLAAEAQR-GPMTVYAGFDPTAPSLHAGHLVPLLTL-RRFQRA-GHRPIVLAGGATGMIGDPR 82 (432)
T ss_dssp HHHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHH-HHHHHT-TCEEEEEECHHHHHHHCCC
T ss_pred HHHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCcCHHHHHHHHHH-HHHHHC-CCcEEEEEcCcEEEccCCc
Confidence 3678999999999999999888874 789999999999988999999988887 999996 777888899999998764
Q ss_pred -------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEecccccccchHHHHHH-HHhhcCHHHHHHhhCC-----CC
Q 015773 137 -------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF-----TG 200 (400)
Q Consensus 137 -------~~~e~i~~~~~~~---~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~r~~t~~~~~~~~g~-----~~ 200 (400)
++.+++++|++.+ ++.|+|+|+||++++||.||+|+++..+..+++ +++++|+++|+++..| .+
T Consensus 83 k~~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~ 162 (432)
T 2jan_A 83 DVGERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGE 162 (432)
T ss_dssp CTTTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHTSTT
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhhcCC
Confidence 7899999999655 677899999999999999999998776777776 9999999999987544 45
Q ss_pred CccccccchhhhhcCCCCCCCccccccc----CCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCC
Q 015773 201 EDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGET 276 (400)
Q Consensus 201 ~~~~g~~~YPllQaad~~~~~~~dil~~----~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~ 276 (400)
++|+|+|+||+|||| ||+.+ +++ ++|||.||+||++++||+|+|+|..+|..++.++||+++|
T Consensus 163 ~is~~ef~YPlLQaa--------Dil~l~~~~~~~---i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG-- 229 (432)
T 2jan_A 163 GISYTEFSYLLLQAN--------DYVELHRRHGCT---LQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADG-- 229 (432)
T ss_dssp CCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--
T ss_pred CcchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--
Confidence 889999999999999 78888 653 6789999999999999999999998899999999999997
Q ss_pred CcCCCCCCCCeeeecC---cHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcC
Q 015773 277 GKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAG 352 (400)
Q Consensus 277 ~KMSKS~~nsaI~L~D---~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g 352 (400)
+|||||.+|++|||+| +|+++++||++ + +|.+ +++||++|+. +.+++++|+++|.+|
T Consensus 230 ~KMSKS~~nsaI~L~d~~tsp~~i~qki~~-~-----------------~D~~-v~~~l~l~t~~~~~ei~~l~~~~~~g 290 (432)
T 2jan_A 230 TKFGKSTGGGSLWLDPQMTSPYAWYQYFVN-T-----------------ADAD-VIRYLRWFTFLSADELAELEQATAQR 290 (432)
T ss_dssp CBTTBCSSSCBCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHSCCCHHHHHHHHHHHHHC
T ss_pred CcCCCCCCCCeEEccCCCCCHHHHHHHHhc-C-----------------Cchh-HHHHHHHHHcCChHHHHHHHHHHhhc
Confidence 7999999999999999 99999999999 2 2333 3788888763 889999999999999
Q ss_pred CCChHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 353 GMLTGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 353 ~~~~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
. +++++|+.||++|++++|+.++..++..
T Consensus 291 ~-~~~~~K~~LA~~v~~~~hg~~~~~~a~~ 319 (432)
T 2jan_A 291 P-QQRAAQRRLASELTVLVHGEAATAAVEH 319 (432)
T ss_dssp G-GGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5 9999999999999999999999877654
No 27
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.4e-59 Score=502.03 Aligned_cols=318 Identities=19% Similarity=0.248 Sum_probs=270.5
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--C
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN--L 137 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~ 137 (400)
.+++||.... .+.++|.+.+++|+++++|+||+||| +|||||+++....+++||++ |+.++++|||+||+++++ .
T Consensus 16 ~~~~~~~~e~-~~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~ 92 (690)
T 3p0j_A 16 KLLRSVGEEC-IQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAA-GCEFVFWVADWFALMNDKVGG 92 (690)
T ss_dssp HHHHHTCSEE-ECHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGGGGCTTTT
T ss_pred HHHhhCceee-cCHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHC-CCcEEEEEeeeEEEecCCCcc
Confidence 4677887643 34566777778888999999999999 89999977654334899996 889999999999999763 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc-c--chHHHHHHHHhhcCHHHHHHhh---CCC-CCccccccchh
Q 015773 138 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G--AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFP 210 (400)
Q Consensus 138 ~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~-~--~~~~~~~~l~r~~t~~~~~~~~---g~~-~~~~~g~~~YP 210 (400)
+.+++++++.++++.|+|||+||++++||.||+|.. + .+|..+.++++++|+++|+++. ++. .++++|+|+||
T Consensus 93 ~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YP 172 (690)
T 3p0j_A 93 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 172 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhH
Confidence 899999999999999999999999999999999864 2 4678888999999999999764 332 24899999999
Q ss_pred hhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCC-CCeeeecccccCCCCCCCcCCCCCCCCeee
Q 015773 211 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIY 289 (400)
Q Consensus 211 llQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~ 289 (400)
+|||| ||+.++++ +||||.||+||+++|||+|+|+|.. +|.++++++||+|+++++|||||.+||+||
T Consensus 173 lLQAa--------Dil~~~ad---~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~ 241 (690)
T 3p0j_A 173 LMQCC--------DIFFLKAD---ICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 241 (690)
T ss_dssp HHHHH--------HHHHTTCS---EECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred HHHHH--------HHHhhCCC---EEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeee
Confidence 99999 78888875 8999999999999999999999985 788889999999944347999999988999
Q ss_pred ecCcHHHHHHHhhcccccCCcc-hhHhhhhcCCC---cccchHHHHHhhccC------------ChHHHHHHHHHHhcCC
Q 015773 290 VTDSAKAIKNKINKYAFSGGQE-SVELHRKLGAN---LEVDIPVKYLSFFLE------------DDAELEHIKKEYGAGG 353 (400)
Q Consensus 290 L~D~~~~i~~KI~k~A~t~~~~-t~e~~~~~g~~---p~v~v~~~~l~~f~~------------~~~eleei~~~~~~g~ 353 (400)
|+|+|++|++||++ |||++.. +..++++.|++ ++.|++++|+.+|.. +++++++|+++|++|+
T Consensus 242 L~D~p~~i~kKI~~-A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~ 320 (690)
T 3p0j_A 242 MEDTEEDVARKIRQ-AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDE 320 (690)
T ss_dssp TTCCHHHHHHHHHT-SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHh-CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCC
Confidence 99999999999999 9999653 44456666665 678899999998742 3578999999999999
Q ss_pred CChHHHHHHHHHHHHHHhhhHHHHHHHhhHH--HHHHHHhc
Q 015773 354 MLTGEVKQRLAKVLTELVERHQVARAAVTDE--MVDAFMAV 392 (400)
Q Consensus 354 ~~~~~lK~~La~~i~~~l~~~~~~~~~~~~~--~~~~~~~~ 392 (400)
++|++||+.||+.|+++|+|+|+||++..+. +++++..-
T Consensus 321 l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~~ 361 (690)
T 3p0j_A 321 VSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSY 361 (690)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 9999999999999999999999999986643 67766543
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=8e-60 Score=473.66 Aligned_cols=290 Identities=20% Similarity=0.279 Sum_probs=241.5
Q ss_pred hhHHHhcCc--ccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCccccccc
Q 015773 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK 135 (400)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~ 135 (400)
...|++||+ ++++++++++| ++ +++++|+||+||| +|||||+++++++ .++|++ |+.++++|||+||++++
T Consensus 10 ~~~l~~Rg~~e~~~~~~L~~~L---~~-~~~~vy~G~~PTG-~lHlG~~~~~l~~-~~~~q~-g~~~i~~I~D~ha~t~~ 82 (372)
T 1n3l_A 10 KLHLITRNLQEVLGEEKLKEIL---KE-RELKIYWGTATTG-KPHVAYFVPMSKI-ADFLKA-GCEVTILFADLHAYLDN 82 (372)
T ss_dssp HHHHHHTTCSEEECHHHHHHHH---TT-SCCEEEEEECCSS-CCBGGGHHHHHHH-HHHHHT-TCEEEEEECHHHHHHTT
T ss_pred HHHHHHcCCeeecCHHHHHHHH---hc-CCCEEEeCcCCCC-cccHHHHHHHHHH-HHHHHC-CCCEEEEEcCCceeeCC
Confidence 468899997 67776666665 44 6789999999999 8999999999999 677764 88899999999999976
Q ss_pred CCCHHHHHHHH---HHH-HH-HHHHcCCCCCceEEEeccccc-ccchHHHHHHHHhhcCHHHHHHh----hCCCCCcccc
Q 015773 136 NLSVEESQRLA---REN-AK-DIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYNKVVGI----FGFTGEDHIG 205 (400)
Q Consensus 136 ~~~~e~i~~~~---~~~-~~-~ilA~G~dp~kt~i~~~s~~~-~~~~~~~~~~l~r~~t~~~~~~~----~g~~~~~~~g 205 (400)
..+.+++.++. .++ +. .++|||+||+++.||.||+|. ...++.+++++++++|++++++. .++.+++++|
T Consensus 83 ~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g 162 (372)
T 1n3l_A 83 MKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLS 162 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCcce
Confidence 55555654444 333 44 368999999999999999994 45677788899999999999885 3556789999
Q ss_pred ccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCC
Q 015773 206 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 285 (400)
Q Consensus 206 ~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~n 285 (400)
+|+||+|||| ||+.+++ ++||+|.||+||++++||+++|+|+++|..++.++||+|+| +|||||.+|
T Consensus 163 ~~~YP~lQaa--------Dil~~~a---~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG--~KMSKS~~n 229 (372)
T 1n3l_A 163 GLLYPGLQAL--------DEEYLKV---DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEE 229 (372)
T ss_dssp HHHHHHHHHH--------HHHHTTC---SEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSC--C-------C
T ss_pred eeecchHhhc--------cHHHhcC---CEEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCc--ccccCCCCC
Confidence 9999999999 7888887 48999999999999999999999999999999999999997 799999999
Q ss_pred CeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhh--------ccC----------ChHHHHHHHH
Q 015773 286 SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSF--------FLE----------DDAELEHIKK 347 (400)
Q Consensus 286 saI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~--------f~~----------~~~eleei~~ 347 (400)
++|||+|+|++|++||++ |||++.. ++.+.++.|+++ |+. +.+++++|++
T Consensus 230 s~I~L~d~p~~i~kKi~~-A~td~~~-----------~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~ 297 (372)
T 1n3l_A 230 SKIDLLDRKEDVKKKLKK-AFCEPGN-----------VENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEK 297 (372)
T ss_dssp CSCBTTCCHHHHHHHHHT-CCCCTTC-----------CSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHH
T ss_pred CeEeccCCHHHHHHHHHH-ccCCCCC-----------CCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHH
Confidence 999999999999999999 9999853 223345777775 531 4578999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHhhhHHHHHH
Q 015773 348 EYGAGGMLTGEVKQRLAKVLTELVERHQVARA 379 (400)
Q Consensus 348 ~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~ 379 (400)
+|.+|+++|++||+.||++|+++|+|+|++++
T Consensus 298 ~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 298 DFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 99999899999999999999999999999998
No 29
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=5.7e-60 Score=471.58 Aligned_cols=289 Identities=16% Similarity=0.156 Sum_probs=236.3
Q ss_pred hhHHHhcCcc--cccC-----CHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcc
Q 015773 58 PHVFLRRGVF--FAHR-----DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 58 ~~~l~~Rgi~--~~~~-----d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~ 130 (400)
.+.|++||++ +.++ +++++|+..++|+|+++|+||+|||++|||||+++++.+ ++||++ |+.++++|||+|
T Consensus 12 ~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~-~~lQ~~-G~~~~~lIaD~h 89 (356)
T 2pid_A 12 LAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGL-FHLQRA-GHNVIALVGGAT 89 (356)
T ss_dssp HHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHH-HHHHHT-TCEEEEEECTTG
T ss_pred HHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHH-HHHHHC-CCcEEEEEccce
Confidence 4899999999 8887 888888776677789999999999977999999988876 999996 788888899999
Q ss_pred cccccC---------CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEecccccccchHHHHHH-HHhhcCH
Q 015773 131 KCMWKN---------LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDYVGGAFYKNMVK-VAKCVTY 189 (400)
Q Consensus 131 a~~~~~---------~~~e~i~~~~~~~~~~ilA~G~dp~k-----------t~i~~~s~~~~~~~~~~~~~-l~r~~t~ 189 (400)
|++.++ ++++++++|+++++++|+|+ +||++ +.|+.|++|+.+..+..+++ +++++++
T Consensus 90 al~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v 168 (356)
T 2pid_A 90 ARLGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRM 168 (356)
T ss_dssp GGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBH
T ss_pred eeecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeH
Confidence 998642 48999999999999999999 88754 89999999987655555555 8999999
Q ss_pred HHHHHhhCC------CCCccccccchhhhhcCCCCCCCccccccc----CCCCceeeccccCchhHHHHHHHHHhhhCCC
Q 015773 190 NKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH 259 (400)
Q Consensus 190 ~~~~~~~g~------~~~~~~g~~~YPllQaad~~~~~~~dil~~----~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~ 259 (400)
++|.++.++ .+++|+|+|+||+|||| ||+.+ +++ ++|||.||+||++++||+|+|+|..
T Consensus 169 ~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAa--------Dil~l~~~~~~~---i~p~G~DQ~~~i~l~rdla~r~n~~ 237 (356)
T 2pid_A 169 GTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAY--------DFYYLFQRYGCR---VQLGGSDQLGNIMSGYEFINKLTGE 237 (356)
T ss_dssp HHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHH--------HHHHHHHHHCCC---EEEEEGGGHHHHHHHHHHHHHHSSC
T ss_pred HHHhcchHHHHhhccCCCCchHHHHHHHHHHH--------HHHHHhccCCCc---EEeccHHHHHHHHHHHHHHHHhCCC
Confidence 999987655 24799999999999999 78888 664 7799999999999999999999998
Q ss_pred CCeeeecccccCCCCCCCcCCCCCCCCeeeecC---cHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhcc
Q 015773 260 KPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL 336 (400)
Q Consensus 260 kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D---~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~ 336 (400)
+|..++.++||+|+| +|||||.+| +|||+| +|++|++||++ + +|.+ +++||++|+
T Consensus 238 ~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~~ki~~-~-----------------~D~~-v~~~l~~~t 295 (356)
T 2pid_A 238 DVFGITVPLITSTTG--AKLGKSAGN-AVWLNRDKTSPFELYQFFVR-Q-----------------PDDS-VERYLKLFT 295 (356)
T ss_dssp CCEEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHC
T ss_pred CccccccccccCCCc--ccccCCCCC-eeeccCCCCCHHHHHHHHHc-C-----------------Cchh-HHHHHHHHH
Confidence 899999999999997 799999766 999999 99999999999 2 2223 378888876
Q ss_pred C-ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhhH
Q 015773 337 E-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD 383 (400)
Q Consensus 337 ~-~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~~ 383 (400)
. +++++++|+++|++| .+++++|+.||++|++++|+.++++++...
T Consensus 296 ~~~~~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~a~~~ 342 (356)
T 2pid_A 296 FLPLPEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDSAKRC 342 (356)
T ss_dssp CCCHHHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 889999999999998 599999999999999999999998877653
No 30
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=6.6e-59 Score=457.42 Aligned_cols=285 Identities=19% Similarity=0.246 Sum_probs=246.3
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCC
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLS 138 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~ 138 (400)
-.+++||+ ..+.+.+.|.+.++ ++++++|+||+||| +|||||+++++.+ +|||++ |+.++++|||+||++++..+
T Consensus 4 ~~l~~r~~-~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~-~~lQ~~-g~~~~~~i~D~~a~~~~~~~ 78 (314)
T 2zp1_A 4 FEMIKRNT-SEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKM-IDLQNA-GFDIIILLADLAAYLNQKGE 78 (314)
T ss_dssp HHHHHTTC-SEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHH-HHHHHT-TEEEEEEECHHHHHHTTCCC
T ss_pred HHHHHcCC-eecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHH-HHHHHC-CCCEEEEEecceEecCCCCC
Confidence 36789995 34444455545555 68999999999998 8999997777666 999996 88899999999999987679
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-chHHHHHHHHhhcCHHHHHHhhC---CC-CCccccccchhhhh
Q 015773 139 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFG---FT-GEDHIGKVSFPPVQ 213 (400)
Q Consensus 139 ~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~~~-~~~~~~~~l~r~~t~~~~~~~~g---~~-~~~~~g~~~YPllQ 213 (400)
++++++|+.+++++|+|||+| +.++.||+|..+ .+|..+.++++++|+++|+++.. +. +..++|+|+||+||
T Consensus 79 ~e~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQ 155 (314)
T 2zp1_A 79 LDEIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQ 155 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHH
Confidence 999999999999999999998 788899999865 46777888999999999998753 32 22399999999999
Q ss_pred cCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCc
Q 015773 214 AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293 (400)
Q Consensus 214 aad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~ 293 (400)
|| ||+.+++ +++|+|.||+||++++|++++ ++|.++++++||+|+| .+||||| ++|+|||+|+
T Consensus 156 aa--------Dil~~~~---~~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~L~d~ 218 (314)
T 2zp1_A 156 VN--------TSHYLGV---DVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIAVDDS 218 (314)
T ss_dssp HH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTS-SSBCCTT-TTCSCBTTCC
T ss_pred HH--------hHHhhCC---CEEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCc-ccccCCC-CcceecCCCC
Confidence 99 7888887 489999999999999999987 6899999999999996 3799999 6669999999
Q ss_pred HHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhcc---------------CChHHHHHHHHHHhcCCCChHH
Q 015773 294 AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFL---------------EDDAELEHIKKEYGAGGMLTGE 358 (400)
Q Consensus 294 ~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~---------------~~~~eleei~~~~~~g~~~~~~ 358 (400)
|++|++||++ |+|++.. ++.+++|+|+++|. .+.+++++|+++|++|+++|++
T Consensus 219 ~~~i~~KI~~-a~td~~~-----------~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~ 286 (314)
T 2zp1_A 219 PEEIRAKIKK-AYCPAGV-----------VEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMY 286 (314)
T ss_dssp HHHHHHHHHH-SCCCTTC-----------CTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHh-CCCCCCC-----------CCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHH
Confidence 9999999999 9999753 44577899999986 1456899999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH
Q 015773 359 VKQRLAKVLTELVERHQVARAA 380 (400)
Q Consensus 359 lK~~La~~i~~~l~~~~~~~~~ 380 (400)
||+.||++|+++++|+|++++.
T Consensus 287 ~K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 287 LKNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999874
No 31
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.4e-59 Score=476.71 Aligned_cols=290 Identities=17% Similarity=0.221 Sum_probs=250.8
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 136 (400)
..|.+||++++|++.+.|.+.+++ +++++|+||+|||+||||||+++++.+ +|||++ |+.++++|||+|+++.++
T Consensus 5 ~~L~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~l-~~lQ~~-G~~~i~lIgd~ta~igdpsg 81 (419)
T 2ts1_A 5 AELQWRGLVNQTTDEDGLRKLLNE-ERVTLYCGFDPTADSLHIGHLATILTM-RRFQQA-GHRPIALVGGATGLIGDPSG 81 (419)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHH-HHHHHT-TCEEEEEECTTGGGTCCCTT
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHH-HHHHHC-CCcEEEEEcCceeEecCCCC
Confidence 578999999999999999888874 789999999999988999999998877 999996 777888899999998643
Q ss_pred -------CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEecccccccchHHHHHH-HHhhcCHHHHHHhhCC----CCC
Q 015773 137 -------LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGE 201 (400)
Q Consensus 137 -------~~~e~i~~~~~~~---~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~~-l~r~~t~~~~~~~~g~----~~~ 201 (400)
++.+++++|+..+ +..++++|+||++++||+||+|+.+..+..+++ +++++|+++|+++.++ .++
T Consensus 82 k~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~~~ 161 (419)
T 2ts1_A 82 KKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETG 161 (419)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTTTC
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccCCC
Confidence 4999999999755 556778999999999999999998777777776 9999999999987554 468
Q ss_pred ccccccchhhhhcCCCCCCCcccccccCCCCce-eeccccCchhHHHHHHHHHhhh-CCCCCeeeecccccCCCCCCCcC
Q 015773 202 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKM 279 (400)
Q Consensus 202 ~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~-~vp~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~G~~~KM 279 (400)
+|+|+|+||+|||| ||+.+..+++| ++|+|.||+||++++||+|+|+ |..+|..++.++||+++| +||
T Consensus 162 is~~ef~YPlLQaa--------Dil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG--~KM 231 (419)
T 2ts1_A 162 ISFTEFSYMMLQAY--------DFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADG--TKF 231 (419)
T ss_dssp CCHHHHHHHHHHHH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTS--CCT
T ss_pred cchHHHHHHHHHHH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCc--ccc
Confidence 99999999999999 78887222234 5689999999999999999999 988899999999999998 799
Q ss_pred CCCCCCCeeeecC---cHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCC
Q 015773 280 SASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGML 355 (400)
Q Consensus 280 SKS~~nsaI~L~D---~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~ 355 (400)
|||.+| +|||+| +|+++++||++ . +|. .+++||++|+. +.+++++|+++|.+|. +
T Consensus 232 SKS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D~-~v~~~l~l~t~~~~~ei~~l~~~~~~g~-~ 290 (419)
T 2ts1_A 232 GKTESG-TIWLDKEKTSPYEFYQFWIN-T-----------------DDR-DVIRYLKYFTFLSKEEIEALEQELREAP-E 290 (419)
T ss_dssp TCCSSC-CCBSSTTTSCHHHHHHHHHT-C-----------------CHH-HHHHHHHHHCCCCHHHHHHHHHHHHHCT-T
T ss_pred cCCCCC-eEecCCCCCCHHHHHHHHhc-C-----------------Cch-hHHHHHHHHHcCCHHHHHHHHHHHHccC-C
Confidence 999987 999999 99999999999 2 122 24788888763 8899999999999995 9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 356 TGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 356 ~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
++++|+.||++|++++|+.++..++..
T Consensus 291 ~~~~K~~LA~~v~~~~hg~~~~~~a~~ 317 (419)
T 2ts1_A 291 KRAAQKTLAEEVTKLVHGEEALRQAIR 317 (419)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999877654
No 32
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=2.4e-58 Score=468.67 Aligned_cols=289 Identities=18% Similarity=0.293 Sum_probs=253.0
Q ss_pred hHHHhcCcccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC--
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN-- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~-- 136 (400)
..|++||++++|++.+.|.+.+++ +++++|+||+|||+||||||+++++.+ +|||++ |+.++++|||+|+++.++
T Consensus 7 ~~l~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~~-~~lQ~~-G~~~~~lIgd~ta~igdp~g 83 (420)
T 1jil_A 7 EDLKWRGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTL-RRFQEH-GHRPIVLIGGGTGMIGDPSG 83 (420)
T ss_dssp HHHHHTTCCCCBSCHHHHHHHHHH-SCCEEEEEECCSSSSCBHHHHHHHHHH-HHHHHT-TCEEEEEECTTGGGTCCCTT
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHH-HHHHHC-CCcEEEEEcCceeEecCCCc
Confidence 678999999999998887777764 789999999999988999999998877 999996 777888899999998643
Q ss_pred -------CCHHHHHHHHHHHHHHHHHcCCCC---CceEEEecccccccchHHHHHH-HHhhcCHHHHHHhhCC----CCC
Q 015773 137 -------LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGE 201 (400)
Q Consensus 137 -------~~~e~i~~~~~~~~~~ilA~G~dp---~kt~i~~~s~~~~~~~~~~~~~-l~r~~t~~~~~~~~g~----~~~ 201 (400)
++.+++++|+..+.++++++ +|| ++++||+||+|+.+..+.++++ +++++|+++|+++.++ .++
T Consensus 84 k~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~~~~ 162 (420)
T 1jil_A 84 KSEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHG 162 (420)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHHTTT
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhccCC
Confidence 49999999999999999988 888 9999999999987656666666 9999999999998766 468
Q ss_pred ccccccchhhhhcCCCCCCCcccccccCCCCce-eeccccCchhHHHHHHHHHhhh-CCCCCeeeecccccCCCCCCCcC
Q 015773 202 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKM 279 (400)
Q Consensus 202 ~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~-~vp~G~DQd~~~~l~rdla~r~-~~~kp~~l~~~~lp~L~G~~~KM 279 (400)
+|+|+|+||+|||| ||+.+..+++| ++|+|.||+||++++||+|+|+ |..+|..+++++||+++| +||
T Consensus 163 is~~ef~YplLQaa--------D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG--~KM 232 (420)
T 1jil_A 163 ISYTEFTYTILQAI--------DFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG--KKF 232 (420)
T ss_dssp CCHHHHHHHHHHHH--------HHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTS--CBT
T ss_pred cchHHHHHHHHHHH--------HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCcc--ccc
Confidence 99999999999999 78887222234 5689999999999999999999 988899999999999998 799
Q ss_pred CCCCCCCeeeecC---cHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCC
Q 015773 280 SASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGML 355 (400)
Q Consensus 280 SKS~~nsaI~L~D---~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~ 355 (400)
|||.+| +|||+| +|+++++||++ + +|.+ +++||++|+. +.+++++|+++|.+|. +
T Consensus 233 SKS~~n-aI~L~d~~tsp~~i~~ki~~-~-----------------~D~~-v~~~l~~~t~~~~~ei~~l~~~~~~g~-~ 291 (420)
T 1jil_A 233 GKSESG-AVWLDAEKTSPYEFYQFWIN-Q-----------------SDED-VIKFLKYFTFLGKEEIDRLEQSKNEAP-H 291 (420)
T ss_dssp TBCSSS-BCBSSTTTSCHHHHHHHHHT-C-----------------CHHH-HHHHHHHHCCCCHHHHHHHHHHHHHCG-G
T ss_pred cCCCCC-eEecCCCCCCHHHHHHHHhc-C-----------------Cchh-HHHHHHHHHcCCHHHHHHHHHHHhcCC-C
Confidence 999987 999999 99999999999 2 1222 4788888763 8899999999999995 9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 356 TGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 356 ~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
++++|+.||++|++++|+.+++.++..
T Consensus 292 ~~~~K~~La~~v~~~~hg~~~~~~a~~ 318 (420)
T 1jil_A 292 LREAQKTLAEEVTKFIHGEDALNDAIR 318 (420)
T ss_dssp GCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999999877654
No 33
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-58 Score=463.69 Aligned_cols=304 Identities=20% Similarity=0.229 Sum_probs=241.7
Q ss_pred hHHHhcCcccccCCHHHHHHHHHh-CCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC-
Q 015773 59 HVFLRRGVFFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN- 136 (400)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~-g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~- 136 (400)
-.|++|| +..+.+.+.|.+.+++ ++|+++|+||+||| +|||||+++++++ .++|+ .|+.++++|+|+||++++.
T Consensus 13 ~~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~-~~~~q-~g~~~ii~I~D~ha~t~~~~ 88 (394)
T 2dlc_X 13 FGLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKL-ADFLK-AGCEVTVLLADLHAFLDNMK 88 (394)
T ss_dssp HHHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHH-HHHHH-TTCEEEEEECHHHHHHTTTS
T ss_pred HHHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHH-HHHHH-cCCcEEEEEcCCccccCCCC
Confidence 4678999 5556666777777774 77889999999998 8999999999999 45555 4888999999999999753
Q ss_pred CCHHHHHHHHH----HHHHHHHHcCCCCCceEEEecccccc-cchHHHHHHHHhhcCHHHHHHhh----CCCCCcccccc
Q 015773 137 LSVEESQRLAR----ENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKV 207 (400)
Q Consensus 137 ~~~e~i~~~~~----~~~~~ilA~G~dp~kt~i~~~s~~~~-~~~~~~~~~l~r~~t~~~~~~~~----g~~~~~~~g~~ 207 (400)
.+.+.++.++. ...+.|+|||+||+++.||.||+|.. ..++.+++.+++++|++++++.- ++.+++++|+|
T Consensus 89 ~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~ 168 (394)
T 2dlc_X 89 APLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGL 168 (394)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceee
Confidence 56677776642 33346789999999999999999975 35667788999999999998752 33567899999
Q ss_pred chhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCe
Q 015773 208 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA 287 (400)
Q Consensus 208 ~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsa 287 (400)
+||+|||| |++.++.+ +||+|.||++|++++|++++|+|+++|..+++++||+|+| |+|||||++|++
T Consensus 169 ~YP~lQaa--------D~l~~~~~---~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~-G~KMSKS~~ns~ 236 (394)
T 2dlc_X 169 IYPLMQAL--------DEQFLDVD---CQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQ-GGKMSASDPNSK 236 (394)
T ss_dssp HHHHHHHH--------HHHHTTCS---EEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC-----------CCS
T ss_pred echhHhhc--------cHhhhCCC---EEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCC-CCcCCCCCCCCE
Confidence 99999999 67888874 7899999999999999999999999999999999999993 489999999988
Q ss_pred eeecCcHHHHHHHhhcccccCCcch---------------hHhhhhcCCCcccch--HHHHHhhccCChHHHHHHHHHHh
Q 015773 288 IYVTDSAKAIKNKINKYAFSGGQES---------------VELHRKLGANLEVDI--PVKYLSFFLEDDAELEHIKKEYG 350 (400)
Q Consensus 288 I~L~D~~~~i~~KI~k~A~t~~~~t---------------~e~~~~~g~~p~v~v--~~~~l~~f~~~~~eleei~~~~~ 350 (400)
|||+|+|++|++||++ |+|++..+ .+++++.||++...+ ..+|++++ +.+++++|+++|.
T Consensus 237 I~L~D~p~~i~kKI~k-a~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~--~~~~i~el~~~~~ 313 (394)
T 2dlc_X 237 IDLLEEPKQVKKKINS-AFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPI--TYKSFEEMKLAFK 313 (394)
T ss_dssp CBTTCCHHHHHHHHHH-SCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCE--EESSHHHHHHHHH
T ss_pred EeccCCHHHHHHHHHH-hcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcC--CHHHHHHHHHHHh
Confidence 9999999999999999 99998643 123334444433211 11223333 5578999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015773 351 AGGMLTGEVKQRLAKVLTELVERHQVARAAV 381 (400)
Q Consensus 351 ~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~ 381 (400)
+|.++|++||+.||++|+++|+|+|+++++.
T Consensus 314 ~g~~~~~~~K~~La~~i~~~l~p~r~~~~~~ 344 (394)
T 2dlc_X 314 EEKLSPPDLKIGVADAINELLEPIRQEFANN 344 (394)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhHHHHHHHCC
Confidence 9989999999999999999999999998854
No 34
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=2.4e-58 Score=469.53 Aligned_cols=290 Identities=19% Similarity=0.216 Sum_probs=238.3
Q ss_pred hhHHHhcCc--ccccCCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCccccccc
Q 015773 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWK 135 (400)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~ 135 (400)
.+.+++||+ +++|++++++| ++++|+++|+||+|||++|||||+++++.+ +|||++ |+.++++|||+|+++++
T Consensus 11 ~~~li~Rg~~e~~~~~~L~~~L---~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l-~~lQ~~-G~~~i~lIgD~ta~igd 85 (432)
T 1h3f_A 11 ALALLKRGAEEIVPEEELLAKL---KEGRPLTVKLGADPTRPDLHLGHAVVLRKM-RQFQEL-GHKVVLIIGDFTGMIGD 85 (432)
T ss_dssp HHHHHHTTCSEEETHHHHHHHH---HTCSCCEEEEEECTTCCSCBHHHHHHHHHH-HHHHHT-TCEEEEEECCCC-----
T ss_pred HHHHHHcchHHhCCHHHHHHHH---hcCCCcEEEEcccCCCCCCchhhHHHHHHH-HHHHHC-CCCEEEEEccceEEecC
Confidence 578999999 56655555555 567899999999999988999999987777 999996 78889999999999975
Q ss_pred C---------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEEecccccccchHHHHHHHHhhcCHHHHHHhhCC------
Q 015773 136 N---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------ 198 (400)
Q Consensus 136 ~---------~~~e~i~~~~~~~~~~ilA~G~d--p~kt~i~~~s~~~~~~~~~~~~~l~r~~t~~~~~~~~g~------ 198 (400)
+ ++.+++++|+..+.+.+. +|+| |++++||.||+|+++.+|..++++++++|+++|+++.+|
T Consensus 86 psgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~ 164 (432)
T 1h3f_A 86 PSGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA 164 (432)
T ss_dssp ----------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT
T ss_pred CCCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc
Confidence 3 568899988876666554 7888 999999999999988889999999999999999876654
Q ss_pred CCCccccccchhhhhcCCCCCCCcccccccCCCCceeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCc
Q 015773 199 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 278 (400)
Q Consensus 199 ~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~K 278 (400)
.+++|+|+|+||+|||| ||+.+++ +++|||.||++|++++||+|+|+|..+|..+++++||+|+| .+|
T Consensus 165 ~~~is~~ef~YPlLQaa--------Dil~l~~---~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG-~~K 232 (432)
T 1h3f_A 165 GIPISLHELLYPFAQAY--------DSVAIRA---DVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDG-REK 232 (432)
T ss_dssp TCCCBGGGGTHHHHHHH--------HHHHHTC---SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTS-SSB
T ss_pred CCCCCccccchhhHHhh--------hhhhcCc---cEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCC-ccc
Confidence 36899999999999999 7888886 48999999999999999999999988888999999999998 369
Q ss_pred CCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhhhhcCCCcccchHHHHHhhccC-ChHHHHHHHHHHhcCCCChH
Q 015773 279 MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTG 357 (400)
Q Consensus 279 MSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v~v~~~~l~~f~~-~~~eleei~~~~~~g~~~~~ 357 (400)
||||.+| +|||+|+|+++++||++ +. .+.++.|+++|+. +.++++++.++ +|+
T Consensus 233 MSKS~~n-~I~L~dsp~~i~~Ki~~-~~------------------d~~v~~~l~~ft~~~~eei~~~~~~------~~~ 286 (432)
T 1h3f_A 233 MSKSLDN-YIGLTEPPEAMFKKLMR-VP------------------DPLLPSYFRLLTDLEEEEIEALLKA------GPV 286 (432)
T ss_dssp CCGGGTC-CCBTTSCHHHHHHHHHT-SC------------------GGGHHHHHHHHCCCCHHHHHHHHHH------CHH
T ss_pred cCcCCCC-eeCCCCCHHHHHHHHhC-CC------------------ccHHHHHHHHcCCCCHHHHHHHHhh------ChH
Confidence 9999988 99999999999999999 41 1345899999863 66666666654 799
Q ss_pred HHHHHHHHHHHHHhh----hHHHHHHHhhHH-HHHHHHh
Q 015773 358 EVKQRLAKVLTELVE----RHQVARAAVTDE-MVDAFMA 391 (400)
Q Consensus 358 ~lK~~La~~i~~~l~----~~~~~~~~~~~~-~~~~~~~ 391 (400)
++|+.||++|++++| |+|+||+++++- +|++++.
T Consensus 287 ~~K~~LA~~i~~~l~~~~~pirerr~~~~~~~~v~~il~ 325 (432)
T 1h3f_A 287 PAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFG 325 (432)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSCCSHHHHHHTTCCGGGTT
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHhhchHHHHHHHh
Confidence 999999999999999 999999988752 4444443
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=2.3e-57 Score=457.48 Aligned_cols=291 Identities=15% Similarity=0.150 Sum_probs=241.0
Q ss_pred hhHHHhcCccccc-CCHHHHHHHHHhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccC
Q 015773 58 PHVFLRRGVFFAH-RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKN 136 (400)
Q Consensus 58 ~~~l~~Rgi~~~~-~d~~~ll~~~~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~ 136 (400)
...|.+||+++++ ++.+.|.+.++ ++++++|+||+|||+|||||||++++.+ ++||++ |+.++++|||+|++++++
T Consensus 37 ~~~L~~Rg~~~~~~~~~e~l~~ll~-~~~~~vy~G~dPTg~sLHlGhlv~l~~l-~~lQ~~-G~~~~~lIgD~haligdp 113 (392)
T 1y42_X 37 WDLFEERGYVKDTAGTKEHIAELMR-TRRIGAYVGIDPTAPSLHVGHLLPLMPL-FWMYLE-GYKAFTLIGGSTAKIGDP 113 (392)
T ss_dssp HHHHHHHTCCSCEESCHHHHHHHHH-HCCCEEEEEECCCSSSCBGGGHHHHHHH-HHHHHH-TCEEEEEECTTTTTTCCC
T ss_pred HHHHHHCCcHHhhcCCHHHHHHHHc-CCCCEEEEeecCCCCCccHHHHHHHHHH-HHHHHc-CCcEEEEEcCceeEeCCC
Confidence 3678999999944 56665544444 5789999999999988999999998877 999997 777888899999998753
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHc-----------CCC---CCceEEEecccccccchHHHHH-HHHhhcCHHHH
Q 015773 137 ---------LSVEESQRLARENAKDIIAC-----------GFD---VTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKV 192 (400)
Q Consensus 137 ---------~~~e~i~~~~~~~~~~ilA~-----------G~d---p~kt~i~~~s~~~~~~~~~~~~-~l~r~~t~~~~ 192 (400)
++.+++++|++.+.++++|+ |+| |++++||+||+|..+..+.+++ .+++++++++|
T Consensus 114 sgk~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rm 193 (392)
T 1y42_X 114 TGRLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPM 193 (392)
T ss_dssp CC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHH
T ss_pred CCcchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHH
Confidence 58899999998887777765 456 7899999999997766667777 59999999998
Q ss_pred HHh------hCCCCCccccccchhhhhcCCCCCCCcccccccCCCCce-eeccccCchhHHHHHHHHHhhhCC-------
Q 015773 193 VGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGY------- 258 (400)
Q Consensus 193 ~~~------~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~-~vp~G~DQd~~~~l~rdla~r~~~------- 258 (400)
+++ ++..+++|+|+|+||+|||| ||+.+..+++| ++|||.||+||++++||+|+|+|.
T Consensus 194 l~~~~~k~r~~~~~~is~gef~YPlLQAa--------Dil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~ 265 (392)
T 1y42_X 194 LSRDTVKNKMTQGDGVSFAEFTYPIMQGW--------DWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQE 265 (392)
T ss_dssp HSSHHHHHTTSSSSCCCHHHHHHHHHHHH--------HHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred hhhhHHHHHhcCCCCcccHHHHHHHHHHH--------HHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhcccccc
Confidence 864 33356899999999999999 78877422334 568999999999999999999853
Q ss_pred ----------CCCeeeecccccCCCCCCCcCCCCCCCCeeeecC---cHHHHHHHhhcccccCCcchhHhhhhcCCCccc
Q 015773 259 ----------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKINKYAFSGGQESVELHRKLGANLEV 325 (400)
Q Consensus 259 ----------~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D---~~~~i~~KI~k~A~t~~~~t~e~~~~~g~~p~v 325 (400)
.+|..+++++||+|+| +|||||.+| +|||+| +|+++++||++ + ||.
T Consensus 266 ~~~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~~n-aI~L~d~~tsp~~i~qki~~-~-----------------~D~ 324 (392)
T 1y42_X 266 RKYVTPKTALDECVGFTVPLLTDSSG--AKFGKSAGN-AIWLDPYQTSVFDFYGYFVR-R-----------------SDQ 324 (392)
T ss_dssp HHHHSCCSGGGSCEEEECCCCBCTTC--CBTTBCSSS-BCBSSTTTSCHHHHHHHHHT-C-----------------CTT
T ss_pred ccccccccccCCccccccccCcCCch--hhccCCCCC-eeeccCCCCCHHHHHHHHHc-C-----------------Cch
Confidence 4678889999999997 799999877 999999 99999999998 2 223
Q ss_pred chHHHHHhhccC-ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 015773 326 DIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVT 382 (400)
Q Consensus 326 ~v~~~~l~~f~~-~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~~ 382 (400)
++ ++||++|+. +.+++++|+++|.+|. +++++|+.||++|+++||+.++++++..
T Consensus 325 ~v-~~~l~~ft~l~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~a~~ 380 (392)
T 1y42_X 325 EV-ENLLKLFTFMPISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASAAED 380 (392)
T ss_dssp TH-HHHHHHHCCCCHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hH-HHHHHHHHhCChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 33 788888763 8899999999999986 9999999999999999999999887754
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.8e-49 Score=424.04 Aligned_cols=272 Identities=13% Similarity=0.130 Sum_probs=230.4
Q ss_pred CCceeEEeecCCCCCCcchhhhHHHHH-HHHHHHhcCCCcEEEEecCcccccccC--CCHHHHHHHHHHHHHHHHHcCCC
Q 015773 83 GEKFYLYTGRGPSSEALHLGHLVPFMF-TNRYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFD 159 (400)
Q Consensus 83 g~~~~iytG~~PTg~~lHlGh~i~~~~-~~~~lQ~~~~~~v~I~I~D~~a~~~~~--~~~e~i~~~~~~~~~~ilA~G~d 159 (400)
..|..++++- ||| +|||||++|+++ +..|+|.++|++++|+|||+||+++++ .+++++++++.++++.|+|+|+|
T Consensus 380 ~~~l~~~~~p-s~g-~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d 457 (690)
T 3p0j_A 380 AKPHACMWMP-ALL-KVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLP 457 (690)
T ss_dssp SSCEEEEECC-CCS-SCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcceEEecC-CCC-CcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 4577788876 665 899999999999 646677779999999999999999986 89999999999999999999999
Q ss_pred CCceEEEeccccccc---chHHHHHHHHhhcCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCcccccccCCCCceee
Q 015773 160 VTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 236 (400)
Q Consensus 160 p~kt~i~~~s~~~~~---~~~~~~~~l~r~~t~~~~~~~~g~~~~~~~g~~~YPllQaad~~~~~~~dil~~~~~~~~~v 236 (400)
+ ++.|+.||+|... .+|.+++++++++|+++++++++ .+++++|+|.||+|||| |++.+++| ++
T Consensus 458 ~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaa--------Di~~l~aD---i~ 524 (690)
T 3p0j_A 458 S-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVA--------TALMLSVS---HV 524 (690)
T ss_dssp T-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHH--------HHHHTTCS---EE
T ss_pred c-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHh--------hhhccCCC---EE
Confidence 8 7878888888854 59999999999999999999987 67899999999999999 67788886 78
Q ss_pred ccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcHHHHHHHhhcccccCCcchhHhh
Q 015773 237 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 316 (400)
Q Consensus 237 p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~i~~KI~k~A~t~~~~t~e~~ 316 (400)
|||.||++|++|+||+++|++ +|..++++++|+|+|++.+||||.++|+|+|+|+|++|++||++ |||++. +
T Consensus 525 ~gG~DQ~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~k-A~c~p~--v--- 596 (690)
T 3p0j_A 525 ISTSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPN--E--- 596 (690)
T ss_dssp EECSTTTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHH-SCCCTT--C---
T ss_pred ecccccHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHH-hcCCCC--C---
Confidence 999999999999999999954 68888899999999987777788888999999999999999999 999984 2
Q ss_pred hhcCCCcccchHHHHHhh----cc-C---------ChHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhHHHHHHHh
Q 015773 317 RKLGANLEVDIPVKYLSF----FL-E---------DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAV 381 (400)
Q Consensus 317 ~~~g~~p~v~v~~~~l~~----f~-~---------~~~eleei~~~~~~g~~~~~~lK~~La~~i~~~l~~~~~~~~~~ 381 (400)
.+||..+. ++|+.+ |. + +.+++++|+++|.+|+++|+++|++||+.|+++|+|+|++++-.
T Consensus 597 ---e~np~l~~-~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~~ 671 (690)
T 3p0j_A 597 ---EANPVISV-AQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGE 671 (690)
T ss_dssp ---SCSHHHHH-HHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCChHHHH-HHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46775543 333321 11 0 24789999999999999999999999999999999999999833
No 37
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.67 E-value=3.3e-06 Score=87.23 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=114.3
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
-||| .|||||+..+++.|.+.+. .|..+++-|.|.-. ..+ ...+...+..++..+|++++.. ++.||+..
T Consensus 9 SPtG-~lHiG~artal~n~l~Ar~-~~G~filRieDtD~----~R~---~~~~~~~i~~dL~wLGl~wde~-~~~QS~r~ 78 (492)
T 2cfo_A 9 SPTG-NLHIGTARTAVFNWLYARH-RGGKFILRIEDTDR----ERS---RPEYTENILEGLQWLGLTWDEG-PYFQSDRL 78 (492)
T ss_dssp CTTS-CCBHHHHHHHHHHHHHHHH-TTCEEEEEECCCSS----SSC---CHHHHHHHHHHHHHTTCCCSEE-EEEGGGCH
T ss_pred CCCC-CccHHHHHHHHHHHHHHHh-cCCeEEEEEeeCCc----ccc---chHHHHHHHHHHHHcCCCCCCC-CccccCCH
Confidence 4677 7999999999997555554 57777777877531 111 1345557788888999998753 67888765
Q ss_pred ccchHHHHHHHH-----------------------------------hhcCHHHHHHh--hCC--------CC--C----
Q 015773 173 GGAFYKNMVKVA-----------------------------------KCVTYNKVVGI--FGF--------TG--E---- 201 (400)
Q Consensus 173 ~~~~~~~~~~l~-----------------------------------r~~t~~~~~~~--~g~--------~~--~---- 201 (400)
. .|..-+-+|- |..+..+..+. .|. .. .
T Consensus 79 ~-~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~ 157 (492)
T 2cfo_A 79 D-LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQ 157 (492)
T ss_dssp H-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEE
T ss_pred H-HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEE
Confidence 3 2221111111 11122211111 011 00 0
Q ss_pred -ccccccchhhhhc-CCCCCCCcccccccCCC------Cc---------------eeeccccCchhHHHHHHHHHhhhCC
Q 015773 202 -DHIGKVSFPPVQA-VPSFPSSFPHLFSGKDH------LR---------------CLIPCAIDQDPYFRMTRDVAPRIGY 258 (400)
Q Consensus 202 -~~~g~~~YPllQa-ad~~~~~~~dil~~~~~------~~---------------~~vp~G~DQd~~~~l~rdla~r~~~ 258 (400)
.-.|.+.++.-+. - |++..++| .| +.|..|.|+..+-..-+.+.+.+|.
T Consensus 158 D~v~G~~~~~~~~~~~--------D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~ 229 (492)
T 2cfo_A 158 DLVRGRVSWQGADLGG--------DMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGA 229 (492)
T ss_dssp ETTTEEEEEEGGGGCS--------SEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTC
T ss_pred ecceeeeeecccccCC--------CeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCC
Confidence 0114444444443 3 55555554 22 4567888888776666777799999
Q ss_pred CCCeeeecccccCCCCCCCcCCCCCCCCeee-ec---CcHHHHHHHhhc
Q 015773 259 HKPALIESSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK 303 (400)
Q Consensus 259 ~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~-L~---D~~~~i~~KI~k 303 (400)
+.|...|.+++.+.+| +|||||.++..|- +- =.|+.|.+-+..
T Consensus 230 ~~P~~~H~plil~~~g--~KLSKr~g~~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 230 TPPNFAHTPLILNSTG--QKLSKRDGVTSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp CCCEEEEECCEECSSS--SBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred CCceEEEeeeEECCCC--CEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence 9998888999999886 8999999875331 11 156666665544
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.66 E-value=7e-08 Score=93.70 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=94.7
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
-||| .|||||+..++..|.+.+. .+..+++-|.|...- | ....+...+.+++.++|++++.. ++.||+..
T Consensus 13 sPtG-~LHiG~~rtal~n~l~Ar~-~~g~~ilRieDtD~~--R-----~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~ 82 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAALGSYLQARA-RQGRWLVRIEDIDPP--R-----EVPGAAETILRQLEHYGLHWDGD-VLWQSQRH 82 (298)
T ss_dssp CTTS-CCCHHHHHHHHHHHHHHHH-TTCEEEEEECCSCGG--G-----SCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCH
T ss_pred CCCC-CccHHHHHHHHHHHHHHHh-cCCeEEEEEecCCch--h-----hHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCH
Confidence 4667 7999999999987555555 466777777774311 1 11345557788899999999865 67787765
Q ss_pred ccchHHHHH-HHH-------hhcCHHHHHHh---h-CCC-----------------------CCccccccchhh-hhcCC
Q 015773 173 GGAFYKNMV-KVA-------KCVTYNKVVGI---F-GFT-----------------------GEDHIGKVSFPP-VQAVP 216 (400)
Q Consensus 173 ~~~~~~~~~-~l~-------r~~t~~~~~~~---~-g~~-----------------------~~~~~g~~~YPl-lQaad 216 (400)
+ .|..++ +|. ...|-.++.+. + |.- +.+-.|.+.++. .+.-
T Consensus 83 ~--~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~- 159 (298)
T 1nzj_A 83 D--AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLARE- 159 (298)
T ss_dssp H--HHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHS-
T ss_pred H--HHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCC-
Confidence 2 232222 222 23445555442 1 100 001123333332 2223
Q ss_pred CCCCCcccccccCCCC-c---------------eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCC
Q 015773 217 SFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 280 (400)
Q Consensus 217 ~~~~~~~dil~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMS 280 (400)
|++..++|- | +.|..|.|+..+-..-..+..-+|.+.|...|.+++.+.+| +|||
T Consensus 160 -------D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLS 230 (298)
T 1nzj_A 160 -------DFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLS 230 (298)
T ss_dssp -------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------
T ss_pred -------CEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--Cccc
Confidence 555555431 0 23444988776655556666889999998888998888886 8999
Q ss_pred CCCCCCeee
Q 015773 281 ASDPNSAIY 289 (400)
Q Consensus 281 KS~~nsaI~ 289 (400)
|+.++.+|-
T Consensus 231 KR~g~~~v~ 239 (298)
T 1nzj_A 231 KQNHAPALP 239 (298)
T ss_dssp ------CCC
T ss_pred ccCCccChh
Confidence 998875444
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.56 E-value=1.8e-07 Score=96.07 Aligned_cols=189 Identities=10% Similarity=0.091 Sum_probs=117.8
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 165 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~-------i 165 (400)
.||| .|||||+..+++.|.+.+.. |..+++-|-|.-. ..+ ...+...++.++..+|++++... .
T Consensus 9 sPtG-~LHiG~~rtal~n~l~Ar~~-~G~filRieDtD~----~R~---~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTG-DPHVGTAYIALFNYAWARRN-GGRFIVRIEDTDR----ARY---VPGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSS-SCBHHHHHHHHHHHHHHHHT-TCEEEECBCCCCT----TSC---CTTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHc-CCEEEEEeCcCCC----ccc---ChHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 4778 79999999999986666664 5566666766421 111 12334467788889999998653 4
Q ss_pred EecccccccchHHHHHHH-----------------------------HhhcCHHHHHHhh--CC--------CC--Ccc-
Q 015773 166 FSDFDYVGGAFYKNMVKV-----------------------------AKCVTYNKVVGIF--GF--------TG--EDH- 203 (400)
Q Consensus 166 ~~~s~~~~~~~~~~~~~l-----------------------------~r~~t~~~~~~~~--g~--------~~--~~~- 203 (400)
|.||+... .|+.-+-+| +|..+..+..+.. |. .. .+.
T Consensus 80 ~~QS~r~~-~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~ 158 (468)
T 1j09_A 80 YRQSERLP-LYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEV 158 (468)
T ss_dssp CBGGGCHH-HHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEE
T ss_pred eeccCCHH-HHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 78888753 221111111 2233444333221 21 00 111
Q ss_pred ----ccccchhhhhcCCCCCCCcccccccCCCC-c---------------eeeccccCchhHHHHHHHHHhhhCCCCCee
Q 015773 204 ----IGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 263 (400)
Q Consensus 204 ----~g~~~YPllQaad~~~~~~~dil~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~r~~~~kp~~ 263 (400)
.|.+.++..+.- |++.+++|. | +.|..|.|+..+-..-.-+.+.+|.+.|..
T Consensus 159 ~D~~~G~~~~~~~~~~--------D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 159 KDELRGVVVYDNQEIP--------DVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp EETTTEEEEEEGGGSC--------CCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred EeccceeEeecccCCC--------CeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 355666666554 566655541 1 245569999888887788899999988987
Q ss_pred eecccccCCCCCCCcCCCCCCCCeeeecC------cHHHHHHHhhc
Q 015773 264 IESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 303 (400)
Q Consensus 264 l~~~~lp~L~G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~k 303 (400)
.|.+++.+.+| .||||+.++.. |.+ .|+.|.+-+..
T Consensus 231 ~h~~li~~~~g--~klSKR~g~~~--l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 231 YHMPLLRNPDK--TKISKRKSHTS--LDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp EEECCCBCTTS--CBCCTTTSCCB--HHHHHHTTCCHHHHHHHHHH
T ss_pred EEeeeeeCCCC--Cccccccchhh--HHHHHHCCCCHHHHHHHHHH
Confidence 77788888776 79999998753 332 57777766654
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.53 E-value=2e-06 Score=88.83 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=113.9
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FI 165 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt-------~i 165 (400)
.||| .|||||+..+++.|.+.+..+| .+++-|-|.- ...+. ..+...++.++..+|++++.. -+
T Consensus 14 sPTG-~LHiG~~rtAL~n~l~Ar~~gG-~fiLRieDtD----~~R~~---~~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTG-TPHVGLVRTALFNWAYARHTGG-TFVFRIEDTD----AQRDS---EESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSS-SCBHHHHHHHHHHHHHHHHHTC-EEEECBCCCC----TTTCC---HHHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHHHHHHHHHHcCC-EEEEEECcCC----CcccC---hHHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 4677 7999999999998777777644 4555566632 11111 234447778888899998863 47
Q ss_pred EecccccccchHHHHHHH---H-------------------------------hhcCHHHHHHhh--CC--------CC-
Q 015773 166 FSDFDYVGGAFYKNMVKV---A-------------------------------KCVTYNKVVGIF--GF--------TG- 200 (400)
Q Consensus 166 ~~~s~~~~~~~~~~~~~l---~-------------------------------r~~t~~~~~~~~--g~--------~~- 200 (400)
|.||+... .|+.-+-+| + |..+..+..+.. |. .+
T Consensus 85 ~~QS~r~~-~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~ 163 (498)
T 2ja2_A 85 YRQSQRAE-IYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDD 163 (498)
T ss_dssp CBGGGCHH-HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSS
T ss_pred eeeecCHH-HHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCC
Confidence 88988753 221111111 1 111222211111 10 00
Q ss_pred Ccc-----ccccchhhhhcCCCCCCCcccccccCCCC-c---------------eeeccccCchhHHHHHHHHHhhh---
Q 015773 201 EDH-----IGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRI--- 256 (400)
Q Consensus 201 ~~~-----~g~~~YPllQaad~~~~~~~dil~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~r~--- 256 (400)
.+. .|.+.++.-+.- |++..++|. | +.|..|.|+..+....+-+.+.+
T Consensus 164 ~~~~~D~v~G~i~~~~~~~~--------D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~ 235 (498)
T 2ja2_A 164 DLAWNDLVRGPVTFAAGSVP--------DFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRI 235 (498)
T ss_dssp CEEEEETTTEEEEECTTCSC--------CCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHT
T ss_pred ceEEEecccceEeecccccC--------cceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhh
Confidence 011 244555544433 555555441 1 23456999999988778888888
Q ss_pred --CCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC------cHHHHHHHhhc
Q 015773 257 --GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 303 (400)
Q Consensus 257 --~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~k 303 (400)
|.+.|...+.+++.+.+| +||||+.++.+ |.+ .|+.|.+-+..
T Consensus 236 g~g~~~P~~~h~plil~~~g--~KLSKR~g~~~--l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 236 GVAERIPKFAHLPTVLGEGT--KKLSKRDPQSN--LFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp TSCCCCCEEEEECCEECSSS--SBCCTTSGGGB--HHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCCCCeEEEeeeeECCCC--CcccccCCccc--HHHHHhCCCCHHHHHHHHHH
Confidence 999998888899888886 79999987633 332 46666665544
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.43 E-value=1.5e-06 Score=89.62 Aligned_cols=189 Identities=13% Similarity=0.180 Sum_probs=114.3
Q ss_pred cCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------
Q 015773 92 RGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF------- 164 (400)
Q Consensus 92 ~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~------- 164 (400)
=.||| .|||||+..+++.|.+.+.. |..+++-|-|.- ...+ +..+...+..++..+|++++...
T Consensus 32 PsPtG-~LHiG~~rtal~n~l~Ar~~-~G~filRieDtD----~~R~---~~~~~~~I~~dL~wlGl~wDe~~~~gG~~g 102 (488)
T 3afh_A 32 PSPTG-HLHVGGARTALFNWMFARKE-GGKFILRIEDTD----TERS---SREYEQQILESLRWCGLDWDEGPDIGGDFG 102 (488)
T ss_dssp CCCSS-SCBHHHHHHHHHHHHHHHHH-TCEEEECBCCCC----TTTC---CHHHHHHHHHHHHHTTCCCSBBTTTBCTTC
T ss_pred CCCCC-CccHHHHHHHHHHHHHHHHc-CCEEEEEEeeCC----cccc---cHHHHHHHHHHHHHcCCCCCcCCCCCCCCC
Confidence 35677 79999999999986666665 556666676642 1111 23344467788889999988653
Q ss_pred EEecccccccchHHHHH-HHHhh-------cCHHHHHH-------------hhCC--------C-CC-----ccccccch
Q 015773 165 IFSDFDYVGGAFYKNMV-KVAKC-------VTYNKVVG-------------IFGF--------T-GE-----DHIGKVSF 209 (400)
Q Consensus 165 i~~~s~~~~~~~~~~~~-~l~r~-------~t~~~~~~-------------~~g~--------~-~~-----~~~g~~~Y 209 (400)
.|.||+... .|..++ +|... .|-.++.+ ..|. . .. .-.|.+.+
T Consensus 103 p~~QSer~~--~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~ 180 (488)
T 3afh_A 103 PYRQSERLE--IYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEF 180 (488)
T ss_dssp CCBGGGCHH--HHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEE
T ss_pred CeeeeCCHH--HHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEee
Confidence 577887652 333322 22211 11111100 1111 1 00 11244444
Q ss_pred hhhhcCCCCCCCcccccccCCCC-c---------------eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCC
Q 015773 210 PPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 273 (400)
Q Consensus 210 PllQaad~~~~~~~dil~~~~~~-~---------------~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~ 273 (400)
+.-+.- |++..++|. | +.|..|.|+..+--.-+-+.+.+|.+.|...|.+++.+.+
T Consensus 181 ~~~~~~--------D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~ 252 (488)
T 3afh_A 181 DNSTLE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSD 252 (488)
T ss_dssp EGGGSC--------CEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTT
T ss_pred cCCCCC--------CeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCC
Confidence 443332 444433321 0 3455799998888777888999999999888889998888
Q ss_pred CCCCcCCCCCCCCeeeecC------cHHHHHHHhhc
Q 015773 274 GETGKMSASDPNSAIYVTD------SAKAIKNKINK 303 (400)
Q Consensus 274 G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~k 303 (400)
| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 253 g--~KLSKR~g~~--~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 253 R--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp S--SBCCTTTSCC--BHHHHHHHTCCHHHHHHHHHH
T ss_pred C--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 6 8999998863 3433 57777766654
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.19 E-value=1.9e-06 Score=90.83 Aligned_cols=189 Identities=13% Similarity=0.188 Sum_probs=114.4
Q ss_pred cCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------
Q 015773 92 RGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF------- 164 (400)
Q Consensus 92 ~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~------- 164 (400)
=-||| .|||||+..++..|.+.+. +|..+++-|.|.. .... +..+...+..++..+|++++...
T Consensus 136 PsPTG-~LHiG~artAl~n~l~Ar~-~~G~~ilRieDtD----~~r~---~~~~~~~I~~dL~wlGl~~D~~~~~gG~~g 206 (592)
T 3al0_C 136 PSPTG-HLHVGGARTALFNWMFARK-EGGKFILRIEDTD----TERS---SREYEQQILESLRWCGLDWDEGPDIGGDFG 206 (592)
T ss_dssp CCSSS-CCBHHHHHHHHHHHHHHHH-HTCEEEECBCCCC----SSSC---CHHHHHHHHHHHHHTTCCCSBBTTTBCTTC
T ss_pred CCCCC-CccHHHHHHHHHHHHHHHh-cCCcEEEEecCcC----hhhc---cHHHHHHHHHHHHHcCCCCCCCCCcCCCCC
Confidence 56778 7999999999998655555 4666677777732 1222 23344467788889999998643
Q ss_pred EEecccccccchHHHHH-HHHhh---c----CHHHH-------------HHhhCC--------C-C-----Cccccccch
Q 015773 165 IFSDFDYVGGAFYKNMV-KVAKC---V----TYNKV-------------VGIFGF--------T-G-----EDHIGKVSF 209 (400)
Q Consensus 165 i~~~s~~~~~~~~~~~~-~l~r~---~----t~~~~-------------~~~~g~--------~-~-----~~~~g~~~Y 209 (400)
.|.||+.. ..|..++ +|... . |-.++ ....|. . . ..-.|.+.+
T Consensus 207 p~~qSer~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~~ 284 (592)
T 3al0_C 207 PYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEF 284 (592)
T ss_dssp CCBSTTCH--HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEEC
T ss_pred CeeeeCCH--HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceeee
Confidence 57788765 2333322 22111 1 00000 001110 0 0 011244444
Q ss_pred hhhhcCCCCCCCcccccccCCC-Cc---------------eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCC
Q 015773 210 PPVQAVPSFPSSFPHLFSGKDH-LR---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 273 (400)
Q Consensus 210 PllQaad~~~~~~~dil~~~~~-~~---------------~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~ 273 (400)
+.-+.- |++..++| .| +.|..|.|+..+--.-+-+.+.+|.+.|...|.+++.+.+
T Consensus 285 ~~~~~~--------D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~ 356 (592)
T 3al0_C 285 DNSTLE--------DFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSD 356 (592)
T ss_dssp CSSSSC--------CEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTT
T ss_pred ccccCC--------CeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCC
Confidence 443322 44444433 11 2455799999988888888999999989888888888888
Q ss_pred CCCCcCCCCCCCCeeeecC------cHHHHHHHhhc
Q 015773 274 GETGKMSASDPNSAIYVTD------SAKAIKNKINK 303 (400)
Q Consensus 274 G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~k 303 (400)
| .||||+.++. .|.+ .|+.|.+-+..
T Consensus 357 g--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 357 R--TPLSKRHGAT--SVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp S--SBCCTTTCSS--BHHHHHHTTCCHHHHHHHHTT
T ss_pred C--CcccccCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 6 8999998873 3332 57777766654
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.83 E-value=0.00031 Score=72.28 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=49.0
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC------cHHHHHHHhhc
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKINK 303 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D------~~~~i~~KI~k 303 (400)
.|..|.||..+...-.-+.+.+|.+.|...|.+++...+| +||||+.++. .|.+ .|+.|.+-+..
T Consensus 221 hvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~g~~--~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 221 HVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRHGAT--SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGGSCC--BHHHHHHHTCCHHHHHHHHHT
T ss_pred eEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 4568999888887778888999998898778888777776 7999998874 3332 46666655544
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.71 E-value=0.0012 Score=68.02 Aligned_cols=190 Identities=13% Similarity=0.189 Sum_probs=103.6
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 015773 93 GPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 93 ~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i~~~s~~~ 172 (400)
-||| .|||||+..++..|.+.+. .|..+++-|-|.-. .| . ...+...+..++..+|++++.. .+.||+..
T Consensus 33 SPTG-~lHiG~~rtal~n~l~Ar~-~~G~filRieDtD~--~R-~----~~~~~~~i~~dl~wlGl~~d~~-~~~qS~r~ 102 (490)
T 4g6z_A 33 SPTG-FIHLGNIRSALYPWAFARK-MKGTFVLRIEDTDV--ER-S----SQEAVDAILEGMAWLGLDYDEG-PYYQMQRM 102 (490)
T ss_dssp CCCS-CCBHHHHHHHHHHHHHHHH-TTCEEEEEECCCCG--GG-C----CHHHHHHHHHHHHHTTCCCSEE-EEEGGGCH
T ss_pred CCCC-CccHHHHHHHHHHHHHHHh-cCCeEEEEeCCCCc--cc-c----cHHHHHHHHHHHHHcCCCCCCC-CcccccCH
Confidence 4557 7999999999987555555 46666776766321 01 1 1345557788888999999753 67888764
Q ss_pred ccchHHHHHHHHh-------hcCHHHHHH------------hh-C----CC--------CC--------------cc---
Q 015773 173 GGAFYKNMVKVAK-------CVTYNKVVG------------IF-G----FT--------GE--------------DH--- 203 (400)
Q Consensus 173 ~~~~~~~~~~l~r-------~~t~~~~~~------------~~-g----~~--------~~--------------~~--- 203 (400)
. .|..-+-+|.. ..|-.++.+ +| | .+ ++ +.
T Consensus 103 ~-~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~~~D 181 (490)
T 4g6z_A 103 D-RYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVAWDD 181 (490)
T ss_dssp H-HHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEEEEE
T ss_pred H-HHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEEEEE
Confidence 2 22222222211 122222211 01 0 00 00 00
Q ss_pred --ccccchhhhhcCCCCCCCcccccccCCCC----------------ceeeccccCchhHHHHHHHHHhhhCCCCCeeee
Q 015773 204 --IGKVSFPPVQAVPSFPSSFPHLFSGKDHL----------------RCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE 265 (400)
Q Consensus 204 --~g~~~YPllQaad~~~~~~~dil~~~~~~----------------~~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~ 265 (400)
.|.+.++.-+ +.|++.++.|- -+.|.-|.|...+--.-.-+.+-||.+.|...|
T Consensus 182 ~i~G~~~~~~~~--------~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P~f~H 253 (490)
T 4g6z_A 182 AVKGRVEISNEE--------LDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPVYAH 253 (490)
T ss_dssp TTTEEEEEEGGG--------CCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCCEEEE
T ss_pred eeeeeeeecccc--------CCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCCeEEE
Confidence 1122222111 11444333320 135667777555443445666789999998888
Q ss_pred cccccCCCCCCCcCCCCCCCCeee-ec---CcHHHHHHHhhc
Q 015773 266 SSFFPALQGETGKMSASDPNSAIY-VT---DSAKAIKNKINK 303 (400)
Q Consensus 266 ~~~lp~L~G~~~KMSKS~~nsaI~-L~---D~~~~i~~KI~k 303 (400)
.+++.+-+| +||||.++..+|- +- -.|+.|.+-+..
T Consensus 254 lpLi~~~~g--~KLSKR~g~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 254 LPTVLNEQG--EKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp ECCEECTTS--SBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred ecceeCCCC--CcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 888887775 8999998754331 11 267778776644
No 45
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.46 E-value=0.005 Score=63.82 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=40.4
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCC
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 285 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~n 285 (400)
+.|..|.|....--.-+-|.+-||.+.|...|.+++.+-+| +|+||.++.
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~~~ 280 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRHGS 280 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTTSC
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccccc
Confidence 46788888666655557788889999999999999988876 899999764
No 46
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.42 E-value=0.0003 Score=73.13 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=32.4
Q ss_pred ccccCchhH---HHHHHHHH-hhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecC-----cHHHHHHHhhc
Q 015773 237 PCAIDQDPY---FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKINK 303 (400)
Q Consensus 237 p~G~DQd~~---~~l~rdla-~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D-----~~~~i~~KI~k 303 (400)
.+|.|+... ......++ .-+|.+.|..++..++.. .|.|+|||||.+| .|.+.+ .|+.++.=+..
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC---------C-CCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 567776551 11234455 457877787777777655 3235899999998 665443 56666655544
No 47
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.27 E-value=0.00056 Score=71.23 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=50.2
Q ss_pred EEeecCC--CCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 015773 88 LYTGRGP--SSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 165 (400)
Q Consensus 88 iytG~~P--Tg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA~G~dp~kt~i 165 (400)
+.|=|.| || .|||||+-.++..+. +.+.+|..+++-|.|.-.- | - ...+...+..++..+|++++ .+
T Consensus 97 v~tRFaPsPtG-~LHIGhaRtal~n~l-~Ar~~~G~~iLRieDtD~~--R-~----~~e~~~~I~edL~wLGl~wd--~~ 165 (553)
T 3aii_A 97 VVLRFAPNPSG-PLHIGHARAAILNHE-YARKYDGRLILRIEDTDPR--R-V----DPEAYDMIPADLEWLGVEWD--ET 165 (553)
T ss_dssp CEEEECCCSSS-SCBHHHHHHHHHHHH-HHHHTTCEEEEEECCCCGG--G-C----CTTHHHHHHHHHHHHTCCCS--EE
T ss_pred eEEEeCCCCCC-CccHHHHHHHHHHHH-HHHHcCCEEEEEECcCCcc--c-c----cHHHHHHHHHHHHHcCCCCC--CC
Confidence 3455555 56 799999999988633 3344677777778774311 1 1 22345577788888999996 57
Q ss_pred Eeccccc
Q 015773 166 FSDFDYV 172 (400)
Q Consensus 166 ~~~s~~~ 172 (400)
+.||+.+
T Consensus 166 ~~qSdr~ 172 (553)
T 3aii_A 166 VIQSDRM 172 (553)
T ss_dssp EEGGGGH
T ss_pred cccccCH
Confidence 8898876
No 48
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=96.58 E-value=0.013 Score=61.13 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=42.8
Q ss_pred CceeEEee-cCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEEe-cCcccc--ccc----CCCHHHHH-HHHHHHHH
Q 015773 84 EKFYLYTG-RGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQL-TDDEKC--MWK----NLSVEESQ-RLARENAK 151 (400)
Q Consensus 84 ~~~~iytG-~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~I-~D~~a~--~~~----~~~~e~i~-~~~~~~~~ 151 (400)
+++++.++ --||| .+||||+...+.. .++++. .|..|.... .|.+.. ... ..+++++. ++.....+
T Consensus 18 ~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~-~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 95 (560)
T 3h99_A 18 KKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRM-RGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQT 95 (560)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHH-cCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 34444444 33447 7999998876554 344444 466665543 343322 111 35555543 34456666
Q ss_pred HHHHcCCCCC
Q 015773 152 DIIACGFDVT 161 (400)
Q Consensus 152 ~ilA~G~dp~ 161 (400)
++.++|++.+
T Consensus 96 ~~~~lgi~~d 105 (560)
T 3h99_A 96 DFAGFNISYD 105 (560)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7778999876
No 49
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=95.77 E-value=0.024 Score=57.87 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=44.2
Q ss_pred eEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHH-HHHHHHHHHHHHH
Q 015773 87 YLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKDIIA 155 (400)
Q Consensus 87 ~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i-~~~~~~~~~~ilA 155 (400)
..+||--|.+ .+||||+.+.+.. .+|++- .|..|..+ ++|.- +...+ ..++.++ .++..+..+++.+
T Consensus 28 ~YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~ 105 (462)
T 3tqo_A 28 LYVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKA 105 (462)
T ss_dssp EEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCC-CCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3446777777 7999998776544 455554 46655444 44433 22221 2555554 4455677778888
Q ss_pred cCCCCC
Q 015773 156 CGFDVT 161 (400)
Q Consensus 156 ~G~dp~ 161 (400)
+|+.++
T Consensus 106 LgI~~d 111 (462)
T 3tqo_A 106 LRVLSP 111 (462)
T ss_dssp HTCCCC
T ss_pred cCCCCC
Confidence 999764
No 50
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.50 E-value=0.16 Score=52.80 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=54.1
Q ss_pred HHHHhCCceeEEeecC--CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH
Q 015773 78 DAYEKGEKFYLYTGRG--PSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 155 (400)
Q Consensus 78 ~~~~~g~~~~iytG~~--PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA 155 (400)
+.+.+|+.-.+.|=|. ||| .|||||+-.++..+.+-+ .+|..+++-|.|.-.- | . ...+...+..++..
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG-~LHIGhaRtal~n~l~Ar-~~gG~fiLRieDTD~~--R-~----~~e~~~~I~edL~w 87 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNG-YLHIGHAKSICLNFGIAQ-DYKGQCNLRFDDTNPV--K-E----DIEYVESIKNDVEW 87 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTS-CCBHHHHHHHHHHHHHHH-HTTCEEEEEECCCCGG--G-C----CHHHHHHHHHHHHH
T ss_pred hHhhcCCcCceEEEeCCCCCC-CccHHHHHHHHHHHHHHH-HcCCEEEEEECCCCch--h-c----CHHHHHHHHHHHHH
Confidence 3455554333445444 567 799999999988743333 4677777777774310 1 2 23444577788888
Q ss_pred cCCCCCceEEEeccccc
Q 015773 156 CGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 156 ~G~dp~kt~i~~~s~~~ 172 (400)
+|++++. .++.||+.+
T Consensus 88 LGl~wde-~~~~qSer~ 103 (553)
T 1qtq_A 88 LGFHWSG-NVRYSSDYF 103 (553)
T ss_dssp TTCCCSS-SCEEGGGGH
T ss_pred cCCCCCC-CCeehcccH
Confidence 9999843 357788776
No 51
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=93.54 E-value=0.025 Score=57.84 Aligned_cols=57 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCCe--eeeccccc-CCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPA--LIESSFFP-ALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp~--~l~~~~lp-~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+-.+|.||..|+.-...+++.+|++.+. +++..++. +-+|.+.|||||.+| .|++.|
T Consensus 239 Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 239 INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp EEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 3379999999999888899999986542 22334442 225534699999998 888766
No 52
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=92.51 E-value=0.49 Score=51.58 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=55.7
Q ss_pred HHHHhCCceeEEe--ecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCcccccccCCCHHHHHHHHHHHHHHHHH
Q 015773 78 DAYEKGEKFYLYT--GRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 155 (400)
Q Consensus 78 ~~~~~g~~~~iyt--G~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a~~~~~~~~e~i~~~~~~~~~~ilA 155 (400)
+.++.|+.-.+.| +=.||| .|||||+-.++..|.+-+ .+|..+++-|.|.- .... ...+...+..++..
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG-~LHIGhARtAL~n~l~Ar-~~gG~fiLRIEDTD----~~R~---~~e~~~~IledL~w 127 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSG-YAHLGHVFASLLDFNTAR-QYGGQFNLRMDDTN----PELA---RQEYVDSIADDLKW 127 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSS-CCBHHHHHHHHHHHHHHH-HTTCEEEEEECCCC----TTTC---CHHHHHHHHHHHHH
T ss_pred HHhhcCCcCceEEEeCCCCCC-CccHHHHHHHHHHHHHHH-HcCCEEEEEECcCC----cccc---cHHHHHHHHHHHHH
Confidence 3456665434556 445567 799999999988743333 46777777787742 1111 23455577788888
Q ss_pred cCCCCCceEEEeccccc
Q 015773 156 CGFDVTKTFIFSDFDYV 172 (400)
Q Consensus 156 ~G~dp~kt~i~~~s~~~ 172 (400)
+|++++. .++.||+.+
T Consensus 128 LGl~wde-~~~~qSer~ 143 (851)
T 2hz7_A 128 LGLDWGE-HFYYASDYF 143 (851)
T ss_dssp HTCCCTT-CEEEGGGGH
T ss_pred cCCCCCC-CcccHhhhH
Confidence 9999854 367888876
No 53
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=91.08 E-value=0.11 Score=53.12 Aligned_cols=75 Identities=16% Similarity=0.010 Sum_probs=41.9
Q ss_pred eeEEeecC--CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEec-Cccccc-c-----cCCCHHHH-HHHHHHHHHHH
Q 015773 86 FYLYTGRG--PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLT-DDEKCM-W-----KNLSVEES-QRLARENAKDI 153 (400)
Q Consensus 86 ~~iytG~~--PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~-D~~a~~-~-----~~~~~e~i-~~~~~~~~~~i 153 (400)
.++.||-- ||| .+||||+...+.. ..++++..|..|....| |.+..- . ...++.++ .++.....+++
T Consensus 6 ~~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 84 (497)
T 2csx_A 6 KFYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLW 84 (497)
T ss_dssp EEEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555554 558 7999998876554 12333445666555422 222110 0 12445443 34556667778
Q ss_pred HHcCCCCC
Q 015773 154 IACGFDVT 161 (400)
Q Consensus 154 lA~G~dp~ 161 (400)
.++|++++
T Consensus 85 ~~lgi~~d 92 (497)
T 2csx_A 85 EFLKIEYT 92 (497)
T ss_dssp HHTTCCCS
T ss_pred HHhCCcCC
Confidence 88999877
No 54
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=90.86 E-value=0.14 Score=52.29 Aligned_cols=55 Identities=15% Similarity=-0.054 Sum_probs=33.7
Q ss_pred eeccccCchhHHH-HHHHHHhhhCCCCCe-eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFR-MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~-l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.||..+.- +-.-.+.-+|.+.|. .+++.++..-+ |+|||||.+| .|.+.|
T Consensus 254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~--G~KMSKS~GN-~i~p~d 310 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPD--GRKMSKTLGN-VVDPFA 310 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTT--SSCCCTTTTC-CCCHHH
T ss_pred EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCC--CCcccccCCC-CCCHHH
Confidence 6679999887321 111122234665554 44566665435 4899999998 887654
No 55
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=89.99 E-value=0.68 Score=47.67 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=47.1
Q ss_pred HhCCceeEEee-cCCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc---ccccc----CCCHHH-HHHHHHHH
Q 015773 81 EKGEKFYLYTG-RGPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE---KCMWK----NLSVEE-SQRLAREN 149 (400)
Q Consensus 81 ~~g~~~~iytG-~~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~---a~~~~----~~~~e~-i~~~~~~~ 149 (400)
++.++|+|-|. -=|+| .|||||+...+.. ..++++.-|..|..+-|.++ +...+ ..++.+ +.++..+.
T Consensus 6 ~~~k~f~Ittp~pY~nG-~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNA-APHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCC-chhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44567777666 34677 7999998886543 12333444666655545444 22211 356554 44555666
Q ss_pred HHHHHHcCCCCC
Q 015773 150 AKDIIACGFDVT 161 (400)
Q Consensus 150 ~~~ilA~G~dp~ 161 (400)
.+++.++|++.+
T Consensus 85 ~~~~~~lgi~~D 96 (542)
T 3u1f_A 85 KKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHTCCCS
T ss_pred HHHHHHhCCccC
Confidence 677778888764
No 56
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=87.68 E-value=0.19 Score=52.38 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=32.5
Q ss_pred eeccccCchhHHHH---HHHHHhhhCCCCCeee-ecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRM---TRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l---~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.||..+..+ ++-.+ +|.+.|..+ .+.++ ... |+|||||.+| .|++.|
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a--~g~~~~~~v~~hg~v-~~~--G~KMSKS~GN-vV~p~d 352 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMS--AELPLPERLVSHGWW-TKD--HKKISKSLGN-AFDPVE 352 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCE-EET--TEECCTTTTC-CCCHHH
T ss_pred eEEEeecccchHHHHHHHHHHh--CCCCCCcEEEEcccE-eeC--CccccccCCC-CCCHHH
Confidence 56899999884221 22222 465555433 35566 455 4899999998 887654
No 57
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=87.29 E-value=0.3 Score=50.35 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=30.3
Q ss_pred eeccccCchhHHH---HHHHHHhhhCCCCCeee-ecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFR---MTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~---l~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-.+.. .++-++. |.+.|..+ ++-++. .. |+|||||.+| .|...|
T Consensus 281 ~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l~-~~--G~KMSKSlGN-vi~p~~ 336 (542)
T 3u1f_A 281 VHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWT-KD--RKKISKSLGN-VFDPVE 336 (542)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCCE-ET--TBCCBTTTTB-CCCHHH
T ss_pred EEEecccccccccchhHHHHHhh--cccccceecccccee-cC--CceeccccCC-CCChhH
Confidence 4578999876532 2333333 54444333 344432 34 5999999998 776443
No 58
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=86.57 E-value=0.33 Score=52.88 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=32.1
Q ss_pred eeccccCchh-HHHHHHHHHhhh-CCCCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDP-YFRMTRDVAPRI-GYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~-~~~l~rdla~r~-~~~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||.. |+........-+ +.+.+ ..+.+.++...+| +|||||.+| .|.+.|
T Consensus 547 l~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~GN-vV~p~d 604 (821)
T 1ile_A 547 FIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSKGN-VVDPWD 604 (821)
T ss_dssp BEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTTTC-CCCHHH
T ss_pred cccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccCCC-CCCHHH
Confidence 4468999863 443332222222 33222 3344666666665 899999999 776543
No 59
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=85.51 E-value=0.32 Score=50.27 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=40.8
Q ss_pred eEEeecCC--CCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE-ecCcccc--ccc----CCCHHHHH-HHHHHHHHHH
Q 015773 87 YLYTGRGP--SSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ-LTDDEKC--MWK----NLSVEESQ-RLARENAKDI 153 (400)
Q Consensus 87 ~iytG~~P--Tg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~-I~D~~a~--~~~----~~~~e~i~-~~~~~~~~~i 153 (400)
+..||--| || .+||||+.+.+.. .+++. ..|..|... -.|.+.. ... ..+++++. ++.....+++
T Consensus 27 ~~i~~p~pypng-~lHiGH~r~~v~~D~laR~lr-~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 104 (536)
T 4dlp_A 27 YYITTAIAYPNG-KPHIGHAYELIATDAMARFQR-LNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA 104 (536)
T ss_dssp EEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCC-CcCcchhHHHHHHHHHHHHHH-hcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455544 47 7999998776553 34444 446665544 2344421 111 24555443 3445556667
Q ss_pred HHcCCCCC
Q 015773 154 IACGFDVT 161 (400)
Q Consensus 154 lA~G~dp~ 161 (400)
.++|+..+
T Consensus 105 ~~lgi~~d 112 (536)
T 4dlp_A 105 EVLNSSND 112 (536)
T ss_dssp HHTTCCCS
T ss_pred HHcCCCCC
Confidence 77898876
No 60
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=85.27 E-value=0.15 Score=53.49 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=35.3
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCC--eeee--cccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKP--ALIE--SSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp--~~l~--~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+--.|.||..|+.....++..+|++.+ ...| +-++. +. |+|||||.|| .|.+.|
T Consensus 350 iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~--g~KMSKr~Gn-~v~l~d 407 (592)
T 1iq0_A 350 INVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LE--GRQMSGRKGL-AVSVDE 407 (592)
T ss_dssp EEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ET--TBCSCC-----CCBHHH
T ss_pred EEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cC--CCcccCCCCC-ccCHHH
Confidence 336899999999988999999998542 2223 23443 34 4899999998 887765
No 61
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=84.88 E-value=0.65 Score=51.28 Aligned_cols=53 Identities=32% Similarity=0.352 Sum_probs=32.1
Q ss_pred eeccccCchh-HH--HHHHHHHhhhCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDP-YF--RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~-~~--~l~rdla~r~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||.. |+ .+...++ -.|. .| ..+.+.++...+| +|||||.+| .|...|
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~-~~g~-~Pfk~v~~hG~V~d~~G--~KMSKSlGN-vV~P~d 608 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVA-TRGV-SPYKFLLSHGFVMDGEG--KKMSKSLGN-VIVPDQ 608 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHH-HHSS-CSBSEEEEECCEECTTS--CCCCSSSSC-CCCHHH
T ss_pred EEEEEecccccHHHHHHHHHHH-hhCC-CcccceeEeeeEEcCCC--cCcccccCC-cCChHH
Confidence 5678999973 43 2234444 2343 34 2344556665565 899999999 776543
No 62
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=84.35 E-value=0.29 Score=50.39 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=40.4
Q ss_pred ceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEec-Cccccc-c-----cCCCHHHH-HHHHHHHHHHH
Q 015773 85 KFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLT-DDEKCM-W-----KNLSVEES-QRLARENAKDI 153 (400)
Q Consensus 85 ~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~-D~~a~~-~-----~~~~~e~i-~~~~~~~~~~i 153 (400)
.+++.|.+ -|+| .+||||+...+.. ..++++..|..|..+.| |.+..- . ...++.++ .++..+..+++
T Consensus 13 ~~~i~t~~P~~ng-~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 91 (524)
T 2x1l_A 13 PFYITTAIAYPNG-VPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQ 91 (524)
T ss_dssp EEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44455543 3467 7999998776554 12333345666655432 322110 0 12445443 34445666677
Q ss_pred HHcCCCCC
Q 015773 154 IACGFDVT 161 (400)
Q Consensus 154 lA~G~dp~ 161 (400)
.++|+.++
T Consensus 92 ~~lgi~~d 99 (524)
T 2x1l_A 92 EKLNISFD 99 (524)
T ss_dssp HHTTCCCS
T ss_pred HHcCCcCC
Confidence 77888765
No 63
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=83.24 E-value=0.54 Score=47.04 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=41.1
Q ss_pred eEEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE-ecCccc--cccc----CCCHHHH-HHHHHHHHHHHHH
Q 015773 87 YLYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ-LTDDEK--CMWK----NLSVEES-QRLARENAKDIIA 155 (400)
Q Consensus 87 ~iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~-I~D~~a--~~~~----~~~~e~i-~~~~~~~~~~ilA 155 (400)
..+||-=|.| .+||||+.+.+.. .+++.. .|..|..+ -.|++. ...+ ..++.++ .++.....+++.+
T Consensus 42 ~y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~-~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~ 119 (414)
T 3c8z_A 42 MYVCGITPYD-ATHLGHAATYLTFDLVHRLWLD-AGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAA 119 (414)
T ss_dssp EEECCCCTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCC-CcCccccHHHHHHHHHHHHHHH-cCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3456655557 7999998766544 345554 46555443 233332 1111 2455444 3344566677888
Q ss_pred cCCC-CC
Q 015773 156 CGFD-VT 161 (400)
Q Consensus 156 ~G~d-p~ 161 (400)
+|+. ++
T Consensus 120 Lgi~~~d 126 (414)
T 3c8z_A 120 LRVLPPH 126 (414)
T ss_dssp TTCCCCS
T ss_pred cCCCCCc
Confidence 9997 54
No 64
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=82.17 E-value=0.47 Score=50.22 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCCC-Ce-eee--cccccCCCCCCCcCCCCCC--CCeeeecC
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYHK-PA-LIE--SSFFPALQGETGKMSASDP--NSAIYVTD 292 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~k-p~-~l~--~~~lp~L~G~~~KMSKS~~--nsaI~L~D 292 (400)
++--.|.+|+.|+.-...++..+|++. +. ..| .-++. +. ++|||||.| | .|.|.|
T Consensus 379 ~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~--~~KMSkr~G~~n-~v~l~d 439 (629)
T 2zue_A 379 VINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RP--EGKFSGRKGTWV-GFTVDE 439 (629)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BT--TBCCCTTTTTTT-TCBHHH
T ss_pred EEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cC--CCcccCCCCCCC-eeeHHH
Confidence 344789999999998899999999854 21 222 23443 33 489999999 8 888776
No 65
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=80.86 E-value=0.71 Score=46.93 Aligned_cols=71 Identities=24% Similarity=0.166 Sum_probs=41.3
Q ss_pred EEeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCcc-ccccc----CCCHHHHHH-HHHHHHHHHHHc
Q 015773 88 LYTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEESQR-LARENAKDIIAC 156 (400)
Q Consensus 88 iytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~~-a~~~~----~~~~e~i~~-~~~~~~~~ilA~ 156 (400)
.+||--|.+ .+||||+-+.+.. .++++-. |..|..+ ++|.- +...+ ..++.++.+ +..+..+++.++
T Consensus 26 yv~gPt~y~-~~HiGHar~~v~~D~l~R~lr~~-G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~L 103 (461)
T 1li5_A 26 YVCGITVYD-LCHIGHGRTFVAFDVVARYLRFL-GYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDAL 103 (461)
T ss_dssp EECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHH-TCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCCcCCC-CCcccccHHHHHHHHHHHHHHHc-CCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 345544447 7999998766544 3555543 5555443 56654 22221 256655544 445666777889
Q ss_pred CCCC
Q 015773 157 GFDV 160 (400)
Q Consensus 157 G~dp 160 (400)
|+.+
T Consensus 104 gI~~ 107 (461)
T 1li5_A 104 NILR 107 (461)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 9975
No 66
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=79.30 E-value=1.1 Score=49.08 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=32.7
Q ss_pred eeccccCchhHHHHHHHHHhh---hCCCCC--eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRMTRDVAPR---IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r---~~~~kp--~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||.... .+|-++.- .|. .| ..+.+.++...+| +|||||.+| .|...|
T Consensus 484 ~~v~G~Dii~~W-~a~~~~~~~~~~g~-~Pfk~v~~hG~vld~~G--~KMSKSlGN-vIdP~d 541 (862)
T 1gax_A 484 VLVTGYDILFLW-VSRMEVSGYHFMGE-RPFKTVLLHGLVLDEKG--QKMSKSKGN-VIDPLE 541 (862)
T ss_dssp CEEEEGGGTTTT-HHHHHHHHHHHSSS-CSBSEEEEECCEECTTS--CBCCTTTTC-CCCHHH
T ss_pred EEecCccccccH-HHHHHHHHHHhcCC-CcccEEEEeeeEEcCCC--CCccccCCC-CCCHHH
Confidence 557899986532 33434332 233 35 2444667766675 899999999 776543
No 67
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=78.63 E-value=3.5 Score=44.23 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred CceeEEeec-CCCCCCcchhhhHH-HHHH--HHHHHhcCCCcEEEEecCcc-ccc--c---c-CCCHHHHH-HHHHHHHH
Q 015773 84 EKFYLYTGR-GPSSEALHLGHLVP-FMFT--NRYLQDAFKVPLVIQLTDDE-KCM--W---K-NLSVEESQ-RLARENAK 151 (400)
Q Consensus 84 ~~~~iytG~-~PTg~~lHlGh~i~-~~~~--~~~lQ~~~~~~v~I~I~D~~-a~~--~---~-~~~~e~i~-~~~~~~~~ 151 (400)
++++|.+++ =|+| .+||||+.. .+.. +.++++.-|..|..+.|.++ ..- . + ..++.++. ++.....+
T Consensus 2 ~~~~itt~~Py~nG-~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANG-PIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCC-chhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 457788877 5566 799999987 4332 24455555777666554433 221 1 1 35555543 34455566
Q ss_pred HHHHcCCCCC
Q 015773 152 DIIACGFDVT 161 (400)
Q Consensus 152 ~ilA~G~dp~ 161 (400)
++.++|++.+
T Consensus 81 ~~~~lgis~D 90 (722)
T 1rqg_A 81 TFQRAKISFD 90 (722)
T ss_dssp HHHHHTCCCS
T ss_pred HHHHhCCCCC
Confidence 7778888765
No 68
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=77.06 E-value=5 Score=40.62 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=41.3
Q ss_pred eEEeecCC--CCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEec-Cccccc-c-----cCCCHHHH-HHHHHHHHHHHH
Q 015773 87 YLYTGRGP--SSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLT-DDEKCM-W-----KNLSVEES-QRLARENAKDII 154 (400)
Q Consensus 87 ~iytG~~P--Tg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~-D~~a~~-~-----~~~~~e~i-~~~~~~~~~~il 154 (400)
+..||--| +| .+||||+...+.. ..++++..|..|..+.| |.+..- . ...++.++ .++.....+++.
T Consensus 5 ~~i~~p~py~~g-~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVNA-EPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45566555 67 7999998876554 12333445666655433 222110 0 12444443 334456667778
Q ss_pred HcCCCCC
Q 015773 155 ACGFDVT 161 (400)
Q Consensus 155 A~G~dp~ 161 (400)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999876
No 69
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=76.45 E-value=4.4 Score=41.07 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=32.9
Q ss_pred eeccccCchhH-HHHHHHHHhhhCCCCCe-eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~-~~l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.||..+ ..+-.....-+|.+.|. .+++.++.. + |+|||||.+| .|.+.|
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~--G~KMSKS~GN-~i~~~d 308 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-E--GKKMSKTLGN-VVDPYE 308 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-S--SSBCCTTTTC-CCCHHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-C--CceeCCcCCC-CCCHHH
Confidence 56789998772 22211122335665454 345556554 5 4899999998 887654
No 70
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=76.09 E-value=11 Score=41.46 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEec-Ccccccc-
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLT-DDEKCMW- 134 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~-D~~a~~~- 134 (400)
.+.+.++|....+ ..++++++++++ =||| .|||||....+.. ..++++.-|..|....| |.+..-.
T Consensus 37 ~W~~~~~f~~~~~--------~~~~~~~v~~~~PypnG-~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie 107 (880)
T 4arc_A 37 HWDEKRTFEVTED--------ESKEKYYCLSMLPYPSG-RLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAE 107 (880)
T ss_dssp HHHHTTTTCCCCC--------TTSCEEEEEECCCCCCS-SCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHH
T ss_pred HHHhcCCcccCCc--------CCCCCEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHH
Confidence 5566677765443 134678888886 4566 7999998877653 13344444666655433 3332210
Q ss_pred -----cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015773 135 -----KNLSVEE-SQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 135 -----~~~~~e~-i~~~~~~~~~~ilA~G~dp~ 161 (400)
...+..+ ..++...+.+++.++|+..+
T Consensus 108 ~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~D 140 (880)
T 4arc_A 108 GAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 1244433 23344455566777887654
No 71
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=75.90 E-value=53 Score=30.88 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=32.6
Q ss_pred ccccCchhHHHHHHHHHhhhCCCCCeeeecccccCCCCCCCcCCCCCCCCeeeecCcH
Q 015773 237 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 294 (400)
Q Consensus 237 p~G~DQd~~~~l~rdla~r~~~~kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~ 294 (400)
.+=.| .|-+.+.|.+++.+|++ ...+..+.+..-+ |..||++ .+||++..
T Consensus 146 FG~kd-~qq~~~l~~~~~dl~~~-v~iv~vp~vr~~d--GlaiSSr----n~yLs~~e 195 (280)
T 2ejc_A 146 FGQKD-AQQFRVLRRMVRDLNMD-VEMIECPIVREPD--GLAMSSR----NVYLSPEE 195 (280)
T ss_dssp EEGGG-HHHHHHHHHHHHHTTCC-CEEEEECCCBCTT--SCBCCGG----GGGCCHHH
T ss_pred eCCCC-CcCHHHHHHHHHHcCCe-EEEEeeCcEEcCC--CCEeccC----cccCCHHH
Confidence 33345 77788889999999973 2222344444444 4799987 78888744
No 72
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=75.64 E-value=1.8 Score=47.99 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=28.9
Q ss_pred eeccccCchh-HHHHHHHHHhh-hCC-CCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~-~~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||-. |....+-...- ++. +-| ..+++-++.. + |+|||||.+| .|.+.|
T Consensus 606 i~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~GN-vv~p~d 663 (967)
T 1wz2_A 606 WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSKGN-VLNFID 663 (967)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-S--SSCCCTTTCC-CCBHHH
T ss_pred EEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-C--CEEccccccC-CCCHHH
Confidence 5578999854 32222211111 221 112 3344555543 5 4899999999 776544
No 73
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=73.35 E-value=8.3 Score=39.52 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=21.8
Q ss_pred eeccccCchhHH---HHHHHHHhhhCCCCCeee-ecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYF---RMTRDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~---~l~rdla~r~~~~kp~~l-~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+...|.||..+. -.++-.+ +|.+.|..+ .+.++. ++| +|||||.+| .|++.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G--~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRG--EKMSKSVGN-VIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCC--ceecccCCC-CCCHHH
Confidence 567899998831 1133233 465544333 455664 454 899999998 887654
No 74
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=73.14 E-value=1.6 Score=47.31 Aligned_cols=54 Identities=20% Similarity=0.097 Sum_probs=29.3
Q ss_pred eeccccCchh-HHHHHHHHHhh-hCC-CCC-eeeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~-~~~l~rdla~r-~~~-~kp-~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.||.. |....+-...- ++. +-| ..+++.++.. + |+|||||.+| .|.+.|
T Consensus 606 i~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~GN-vv~p~d 663 (810)
T 1wkb_A 606 WRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSKGN-VLNFID 663 (810)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-T--TBCCCTTTTC-CCBHHH
T ss_pred EEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-C--CeehhhcCCC-cCCHHH
Confidence 4568999864 32222221111 221 112 3344555543 4 4899999999 777654
No 75
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=70.89 E-value=8.1 Score=38.35 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=20.2
Q ss_pred eeccccCchh-HHHHHHHHHhh-hCCCCCe-e-eecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDP-YFRMTRDVAPR-IGYHKPA-L-IESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~-~~~l~rdla~r-~~~~kp~-~-l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.|+.. |....+-...- .|.+.+. . +++-++. ++| +|||||.+| .|++.|
T Consensus 247 i~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~GN-~v~~~~ 304 (414)
T 3c8z_A 247 IQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSRGN-LVLVSQ 304 (414)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHHH
T ss_pred EEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEcccccCC-cCCHHH
Confidence 4578989766 54443333333 3553332 2 3434544 354 899999998 777643
No 76
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=70.75 E-value=13 Score=37.97 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=40.8
Q ss_pred EeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCc-----------cccccc----CCCHHH-HHHHHH
Q 015773 89 YTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDD-----------EKCMWK----NLSVEE-SQRLAR 147 (400)
Q Consensus 89 ytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~-----------~a~~~~----~~~~e~-i~~~~~ 147 (400)
.||-=|.+ .+||||+.+.+.. .+|++-. |..|..+ |+|. .+...+ ..++.+ +.++..
T Consensus 47 vcgPTvYg-~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~ 124 (501)
T 3sp1_A 47 ACGPTVYN-YAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTE 124 (501)
T ss_dssp ECCCBCSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHH
T ss_pred eCCCcCCC-CcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 35644456 7999997765443 4555543 5555444 5554 133322 255544 444556
Q ss_pred HHHHHHHHcCCCCCc
Q 015773 148 ENAKDIIACGFDVTK 162 (400)
Q Consensus 148 ~~~~~ilA~G~dp~k 162 (400)
...+++.++|+.++.
T Consensus 125 ~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 125 AFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHTTCCCCS
T ss_pred HHHHHHHHcCCCCCC
Confidence 777788889997654
No 77
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=69.36 E-value=10 Score=39.26 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=42.7
Q ss_pred CCceeEEeec-CCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE-ecCcccc--cc----cCCCHHHHH-HHHHHHH
Q 015773 83 GEKFYLYTGR-GPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ-LTDDEKC--MW----KNLSVEESQ-RLARENA 150 (400)
Q Consensus 83 g~~~~iytG~-~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~-I~D~~a~--~~----~~~~~e~i~-~~~~~~~ 150 (400)
++++++-+.. -||| .+||||+...+.. .+++... |..|..+ =.|.+.. .. ...+++++. ++.....
T Consensus 25 ~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~-G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~ 102 (564)
T 3kfl_A 25 QKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVK-GEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFK 102 (564)
T ss_dssp CCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHc-CCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455443332 3668 7999998776553 3444443 5555443 3444422 11 125555544 3445556
Q ss_pred HHHHHcCCCCC
Q 015773 151 KDIIACGFDVT 161 (400)
Q Consensus 151 ~~ilA~G~dp~ 161 (400)
+++.++|+..+
T Consensus 103 ~~~~~lgi~~D 113 (564)
T 3kfl_A 103 QCFQEMNYDMN 113 (564)
T ss_dssp HHHHHTTCCCS
T ss_pred HHHHHcCCCCC
Confidence 66778999876
No 78
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=68.21 E-value=11 Score=38.15 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=29.8
Q ss_pred eeccccCch-hHHHH--HHHHHhhhCCCCCe-eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQD-PYFRM--TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd-~~~~l--~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.|+. +|... +.-.|- +|.+.|. .+|+.++.. + |+|||||.+| .|.+.|
T Consensus 223 ih~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~--G~KMSKS~GN-~v~~~d 279 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-D--REKMSKSLGN-FFTVRD 279 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-T--TBCCCGGGTC-CCBHHH
T ss_pred EEeccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-C--CeEccccCCC-ccChhH
Confidence 446788854 34322 222221 4654443 344455543 4 4899999998 777654
No 79
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=66.14 E-value=2.3 Score=44.76 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=40.6
Q ss_pred eeccccCchhHHHHHHHHHhhhCCCCCe-eeecccccCCCCCCCcCCCCCCCCeeeecCcHHH
Q 015773 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 296 (400)
Q Consensus 235 ~vp~G~DQd~~~~l~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D~~~~ 296 (400)
+--+|.+|+.|+.-...+++.+|++.+. ..|..+ |+- .||||+.|| .|.|.|=-++
T Consensus 368 IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~G~-~v~L~dLlde 424 (607)
T 1f7u_A 368 IYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRKGT-VVFLDNILEE 424 (607)
T ss_dssp EEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGGTC-CCBHHHHHHH
T ss_pred EEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCCCC-cccHHHHHHH
Confidence 3369999999999889999999986553 334444 222 379999998 8888773333
No 80
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=64.47 E-value=16 Score=37.07 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=31.5
Q ss_pred eeccccCchhHHHH-HHHHHhhhCCCCCe-eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 235 LIPCAIDQDPYFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 235 ~vp~G~DQd~~~~l-~rdla~r~~~~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+..+|.||..+.-+ -.-.+..+|.+.|. .+.+-++.. + |+|||||.+| .|.+.|
T Consensus 268 i~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~--G~KMSKS~GN-~v~p~d 323 (524)
T 2x1l_A 268 LHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-R--GEKMSKSIGN-VVDPVN 323 (524)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-C--SCSEETTTEE-SSCHHH
T ss_pred EEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-C--CcccCCcCCC-CCCHHH
Confidence 56789998853221 11222334665442 333445443 4 4899999998 777654
No 81
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=61.34 E-value=2.5 Score=46.35 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=11.9
Q ss_pred CcCCCCCCCCeeeecC
Q 015773 277 GKMSASDPNSAIYVTD 292 (400)
Q Consensus 277 ~KMSKS~~nsaI~L~D 292 (400)
.|||||.+| .|...|
T Consensus 636 ~KMSKSkGN-vVdP~d 650 (878)
T 2v0c_A 636 AVMSKSKGN-GVMVGP 650 (878)
T ss_dssp EECSGGGTC-CCBHHH
T ss_pred HHhhccCCC-cccHHH
Confidence 799999999 776543
No 82
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=55.53 E-value=8.3 Score=42.29 Aligned_cols=14 Identities=43% Similarity=0.285 Sum_probs=11.0
Q ss_pred cCCCCCCCCeeeecC
Q 015773 278 KMSASDPNSAIYVTD 292 (400)
Q Consensus 278 KMSKS~~nsaI~L~D 292 (400)
|||||.+| .|...|
T Consensus 639 KMSKSkGN-vVdP~d 652 (880)
T 4arc_A 639 KMSKSKNN-GIDPQV 652 (880)
T ss_dssp ECCTTTTC-CCCHHH
T ss_pred cccCcCCC-CCCHHH
Confidence 99999999 665443
No 83
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=55.44 E-value=13 Score=40.52 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEecCcc
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLTDDE 130 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~D~~ 130 (400)
...+ |+|....+ ..++++++++|. =||| .||+||.+..... ..++++.-|..+....|=++
T Consensus 19 ~W~~-~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 19 KWAK-NPFVANPK--------SGKPPFVIFMPPPNVTG-SLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp HHHH-SCCCCCTT--------CCSCEEEEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred HHHh-CCCccCcC--------CCCCcEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 4556 77765432 234578888874 3467 7999998876443 23455555776666654443
No 84
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=52.71 E-value=4.6 Score=41.44 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=18.4
Q ss_pred eeccccCch-hHHHHHHHHHhhh-CCC-CCeeeecccccCCCCCCCcCCCCCCCCeeeec
Q 015773 235 LIPCAIDQD-PYFRMTRDVAPRI-GYH-KPALIESSFFPALQGETGKMSASDPNSAIYVT 291 (400)
Q Consensus 235 ~vp~G~DQd-~~~~l~rdla~r~-~~~-kp~~l~~~~lp~L~G~~~KMSKS~~nsaI~L~ 291 (400)
+-.+|.|.. ||.+.-+-...-+ +.+ ....+|+-++. ++| +|||||.+| .|.+.
T Consensus 256 IH~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~-~~G--~KMSKSlGN-~it~~ 311 (501)
T 3sp1_A 256 IHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLI-MDY--NKMSKSRGN-FITVK 311 (501)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEE-CC-------------CCCHH
T ss_pred EEeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEe-eCC--eEccccCCC-cCCHH
Confidence 345777743 3433322222222 322 11334545654 454 899999999 66553
No 85
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=52.21 E-value=2.7 Score=45.09 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=19.9
Q ss_pred CCCe-eeecccccCCCCCCCcCCCCCCCCeeeecC
Q 015773 259 HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 292 (400)
Q Consensus 259 ~kp~-~l~~~~lp~L~G~~~KMSKS~~nsaI~L~D 292 (400)
+.|. .+++.++.. +| +|||||.+| .|+..|
T Consensus 327 ~~Pk~v~~hG~v~~-~G--~KMSKS~GN-vV~p~d 357 (722)
T 1rqg_A 327 NLPYDIPANEYLTL-EG--KKFSTSRNW-AIWVHE 357 (722)
T ss_dssp CCCSBCCEECCEEE-TT--EECBTTTTB-SCBHHH
T ss_pred CCCCEEEEeeeEEe-CC--eeeeeeCCC-cCCHHH
Confidence 4453 334555554 54 899999998 887654
No 86
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=51.41 E-value=3.3 Score=41.98 Aligned_cols=24 Identities=8% Similarity=-0.100 Sum_probs=11.5
Q ss_pred ccccccCC--CCceeeccccCchhHH
Q 015773 223 PHLFSGKD--HLRCLIPCAIDQDPYF 246 (400)
Q Consensus 223 ~dil~~~~--~~~~~vp~G~DQd~~~ 246 (400)
.||+.+.. -.||+||+|+|||||.
T Consensus 222 aDil~~~~d~~~~~~vp~~~d~~~~~ 247 (451)
T 3foc_A 222 LPVYSTYFDGLPFTRVPLPVGTGNED 247 (451)
T ss_dssp GGGSGGGGTTSGGGCCBCC-------
T ss_pred HHHHHhhcCCCCccccccccccccch
Confidence 36664432 3689999999999994
No 87
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=49.23 E-value=9.1 Score=41.53 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=30.0
Q ss_pred hCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEe-cCccc
Q 015773 82 KGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQL-TDDEK 131 (400)
Q Consensus 82 ~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I-~D~~a 131 (400)
.+++++++.|. =||| .|||||....... ..++++.-|..|.... .|-|+
T Consensus 36 ~~~~f~i~~~pPy~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~G 88 (821)
T 1ile_A 36 GGPRYTVYEGPPTANG-LPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG 88 (821)
T ss_dssp TSCBCCBCCCCCCTTS-CCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred CCCcEEEecCCCCCCC-CCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCC
Confidence 44678888887 6777 7999998876543 1334444455444433 34443
No 88
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=48.73 E-value=27 Score=38.20 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=48.7
Q ss_pred HHHhcCcccccC-CHHHHHHHHHhCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEEec-Ccccccc
Q 015773 60 VFLRRGVFFAHR-DLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQLT-DDEKCMW 134 (400)
Q Consensus 60 ~l~~Rgi~~~~~-d~~~ll~~~~~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~I~-D~~a~~~ 134 (400)
.+.+.++|.... + ..++++++++|+ =|+| .|||||....+.. ..++++.-|..|....| |.+..-.
T Consensus 16 ~W~~~~~f~~~~~~--------~~~~k~~v~~~~Py~nG-~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpi 86 (878)
T 2v0c_A 16 FWEEKGFMKAKDLP--------GGRGKQYVLVMFPYPSG-DLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPA 86 (878)
T ss_dssp HHHHHTTTCCCSCC--------C---EEEEEECCCCCSS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHH
T ss_pred HHHHcCCcccCccc--------CCCCCEEEECCCCCCCC-CcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHH
Confidence 444566665543 2 123468888884 3346 7999998876543 12333333666555433 3222210
Q ss_pred ------cCCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 015773 135 ------KNLSVEE-SQRLARENAKDIIACGFDVT 161 (400)
Q Consensus 135 ------~~~~~e~-i~~~~~~~~~~ilA~G~dp~ 161 (400)
...+..+ +.++.....+++.++|+..+
T Consensus 87 e~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~D 120 (878)
T 2v0c_A 87 ENAALKFGVHPKDWTYANIRQAKESLRLMGILYD 120 (878)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccC
Confidence 1234433 34444556667778887654
No 89
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=41.02 E-value=18 Score=37.60 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=27.8
Q ss_pred eeEEeecCCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEE--ecCc
Q 015773 86 FYLYTGRGPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQ--LTDD 129 (400)
Q Consensus 86 ~~iytG~~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~--I~D~ 129 (400)
+.=|+|--|++ .|||||+-..+.- +.++.+..|..|... |+|+
T Consensus 106 ~ve~~spn~~~-~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNK-ELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCC-CCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 34467878887 6999998776543 133334457666554 7886
No 90
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=37.42 E-value=19 Score=39.59 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=27.0
Q ss_pred hCCceeEEeec-CCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEE
Q 015773 82 KGEKFYLYTGR-GPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQ 125 (400)
Q Consensus 82 ~g~~~~iytG~-~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~ 125 (400)
.+++|++.+|. =||| .|||||.+..+.. ..++++.-|..+...
T Consensus 46 ~~~~f~i~~~pPY~nG-~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~ 91 (917)
T 1ffy_A 46 GNETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKTMQGFYAPYV 91 (917)
T ss_dssp TSCBCCEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred CCCceeeCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 34578888887 4577 7999998876543 133444445544443
No 91
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=35.74 E-value=30 Score=36.24 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=26.4
Q ss_pred EeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCc
Q 015773 89 YTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDD 129 (400)
Q Consensus 89 ytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~ 129 (400)
|+|-=|++ .|||||+-+.+.- .+.|. ..|..|.-. |+||
T Consensus 149 ~~spN~~~-plHvGHlRs~iiGD~laRil~-~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAK-PFHAGHLRSTIIGGFLANLYE-KLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTS-CCBGGGHHHHHHHHHHHHHHH-HTTCEEEEEEEEBCC
T ss_pred ecCCCCCC-CCccchHHHHHHHHHHHHHHH-HcCCCeeEEEeecCc
Confidence 67888887 6999998876543 24444 446665554 7884
No 92
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=33.98 E-value=31 Score=36.24 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=27.1
Q ss_pred EeecCCCCCCcchhhhHHHHHH---HHHHHhcCCCcEEEE--ecCc
Q 015773 89 YTGRGPSSEALHLGHLVPFMFT---NRYLQDAFKVPLVIQ--LTDD 129 (400)
Q Consensus 89 ytG~~PTg~~lHlGh~i~~~~~---~~~lQ~~~~~~v~I~--I~D~ 129 (400)
|+|--|++ .|||||+-..+.- .++|. ..|..|... |+|+
T Consensus 125 ~~spN~~~-~~HiGH~Rs~iigD~laR~l~-~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTK-PLHMGHARNAILGDVMARILR-FLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTS-CCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECTT
T ss_pred eeCCCCCC-CCccchhHHHHHHHHHHHHHH-HcCCCceEEecccch
Confidence 78888887 6999998776543 24444 447666554 7887
No 93
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=29.38 E-value=3.4e+02 Score=25.03 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=58.8
Q ss_pred HhCCceeEEeecCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEecCccc-ccc--cCCCHHHHHHHHH--------HH
Q 015773 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEK-CMW--KNLSVEESQRLAR--------EN 149 (400)
Q Consensus 81 ~~g~~~~iytG~~PTg~~lHlGh~i~~~~~~~~lQ~~~~~~v~I~I~D~~a-~~~--~~~~~e~i~~~~~--------~~ 149 (400)
++|+ .++.|+-|-. +-|=+-++-.+. .|.+..|+ .|.|+++|-+. .+- ...+..+.++.++ .+
T Consensus 27 ~~g~--HallGISpgN-syFs~d~L~~Li--~Wa~~~F~-~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i 100 (257)
T 3oqi_A 27 KRRR--HVLVGISPFN-SRFSEDYIHRLI--AWAVREFQ-SVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFA 100 (257)
T ss_dssp HHTC--EEEEEECTTS-TTCCHHHHHHHH--HHHHHHCS-EEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC--eEEEEeCCCC-cccCHHHHHHHH--HHHHccCC-ceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 4555 5899999986 788888877665 58887665 45666799753 222 2356555544442 23
Q ss_pred HHHHHHcCCCCCceEEEecccccccchHHHHH
Q 015773 150 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV 181 (400)
Q Consensus 150 ~~~ilA~G~dp~kt~i~~~s~~~~~~~~~~~~ 181 (400)
...+.++|.+.+ .|..=|++..+..|.++.
T Consensus 101 ~ral~~~g~~~~--~v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 101 EKALEAHGGNPE--DIHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HHHHHHHTCCTT--CEEETTTTTTCHHHHHHH
T ss_pred HHHHHHcCCCcc--cceeHHHhhcCHHHHHHH
Confidence 334455788776 455556776666666543
No 94
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=27.86 E-value=48 Score=33.40 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=27.6
Q ss_pred EeecCCCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEE--ecCccc
Q 015773 89 YTGRGPSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQ--LTDDEK 131 (400)
Q Consensus 89 ytG~~PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~--I~D~~a 131 (400)
|+.--||| .||+||+-..+.- ...+.+..|..|.-. |+||=.
T Consensus 36 ~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 36 YVSANPTG-PLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp CCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred eCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 67788998 6999998776653 133444456665443 788653
No 95
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=23.37 E-value=46 Score=34.45 Aligned_cols=49 Identities=22% Similarity=0.143 Sum_probs=32.2
Q ss_pred eeeccccCchhHHHHHHHHHhhhCCC-CCeeeecccccCCCCCCCcCCCCCCC
Q 015773 234 CLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPN 285 (400)
Q Consensus 234 ~~vp~G~DQd~~~~l~rdla~r~~~~-kp~~l~~~~lp~L~G~~~KMSKS~~n 285 (400)
++|.+|.|...+--+-.-|.+.+|.+ .|...+...| .++| +|||||.++
T Consensus 225 THviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hL-n~~g--~KLSKR~~~ 274 (553)
T 1qtq_A 225 THSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRL-NLEY--TVMSKRKLN 274 (553)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCC-CBTT--SCCCHHHHH
T ss_pred ceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEee-cCCC--ccccccccc
Confidence 47889988766554445555778876 4654443334 4554 899999765
No 96
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=21.81 E-value=1.5e+02 Score=20.17 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhHHHHHHH
Q 015773 361 QRLAKVLTELVERHQVARAAVTDEMVDAF 389 (400)
Q Consensus 361 ~~La~~i~~~l~~~~~~~~~~~~~~~~~~ 389 (400)
..|+..|..+|...+.|++..++..+.+.
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~ri 33 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRI 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999988755544
No 97
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=20.80 E-value=41 Score=36.22 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHhcCcccccCCHHHHHHHHHhCCceeEEeecC-CCCCCcchhhhHHHHHH--HHHHHhcCCCcEEEE
Q 015773 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFMFT--NRYLQDAFKVPLVIQ 125 (400)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~g~~~~iytG~~-PTg~~lHlGh~i~~~~~--~~~lQ~~~~~~v~I~ 125 (400)
...+.++|....+- -+.++++++.+|.= ||| .|||||+...+.. ..++++.-|..|...
T Consensus 16 ~W~~~~~f~~~~~~------~~~~~~~~i~~~~Py~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~ 77 (810)
T 1wkb_A 16 RWLEAKIFEPNIRD------KPKEKKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (810)
T ss_dssp HHHHTTTTCCCGGG------SCGGGEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred HHHhCCCcccCchh------cCCCCcEEEEeCCCCCCC-CCccccchhHHHHHHHHHHHHcCCCccCcC
Confidence 44556666544320 01234566766652 356 7999998876543 133344446655553
Done!