RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015773
(400 letters)
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 493 bits (1271), Expect = e-175
Identities = 241/400 (60%), Positives = 308/400 (77%), Gaps = 5/400 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 25 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 84
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVP 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+F ++LQD F VP
Sbjct: 85 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVP 143
Query: 122 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKN 179
LVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN
Sbjct: 144 LVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKN 203
Query: 180 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 239
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 204 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 263
Query: 240 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 299
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 264 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 323
Query: 300 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 359
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 324 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 383
Query: 360 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 399
K+ L +VL L+ HQ R VTDE+V FM R L F
Sbjct: 384 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDF 423
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 494 bits (1273), Expect = e-174
Identities = 240/400 (60%), Positives = 307/400 (76%), Gaps = 5/400 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 72 NHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHF 131
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVP 121
LRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+F ++LQD F VP
Sbjct: 132 LRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVP 190
Query: 122 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKN 179
LVIQ+TDDEK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN
Sbjct: 191 LVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKN 250
Query: 180 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 239
+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCA
Sbjct: 251 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCA 310
Query: 240 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 299
IDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 311 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 370
Query: 300 KINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEV 359
K+NK+AFSGG++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+
Sbjct: 371 KVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGEL 430
Query: 360 KQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPNMF 399
K+ L +VL L+ HQ R VTDE+V FM R L
Sbjct: 431 KKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLAAAL 470
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 486 bits (1254), Expect = e-173
Identities = 153/384 (39%), Positives = 227/384 (59%), Gaps = 19/384 (4%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD
Sbjct: 4 EFKVTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDY 61
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCM 133
+ IL YE+G F+LYTGRGPS +H+GH++PF ++LQ+ F V L IQ+TDDEK +
Sbjct: 62 DLILKDYEEGRGFFLYTGRGPSGP-MHIGHIIPFFA-TKWLQEKFGVNLYIQITDDEKFL 119
Query: 134 WK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV 192
+K NL+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 120 FKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMA 177
Query: 193 VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 252
+FGFT + IG + FP +Q P+F CLIP AIDQDPY+R+ RD
Sbjct: 178 KAVFGFTEQSKIGMIFFPAIQIAPTFFERKR----------CLIPAAIDQDPYWRLQRDF 227
Query: 253 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQES 312
A +GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++ K+ K+ +GG+ +
Sbjct: 228 AESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPT 287
Query: 313 VELHRKLGANLEVDIPVKYLS-FFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 371
++ R+ G E + K+L FF EDD +L+ G + GE K+ L + E +
Sbjct: 288 LKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFL 347
Query: 372 ERHQVARAAVTDEMVDAFMAVRPL 395
+ HQ R +++V+ F L
Sbjct: 348 KEHQ-RRRKKAEKLVEKFKYTGKL 370
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 488 bits (1258), Expect = e-173
Identities = 204/402 (50%), Positives = 282/402 (70%), Gaps = 9/402 (2%)
Query: 2 DKNEEKQREEEREQVVSPWEVS-------SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
+ E + + +EQVV+PW+V + IDYDKLI +FG + +++ + R +++T
Sbjct: 12 QQVSELKSTDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVT 71
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYL 114
GR PH FLR+G+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+F ++L
Sbjct: 72 GREPHHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVF-TKWL 130
Query: 115 QDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 173
Q+ F VPLVI+LTDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+G
Sbjct: 131 QEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMG 190
Query: 174 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 233
GAFY+ +V+V++ +T + +FGF D IGK F +Q +FPSSFP++ D
Sbjct: 191 GAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTP 250
Query: 234 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 293
CLIPCAIDQDPYFR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+
Sbjct: 251 CLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDT 310
Query: 294 AKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGG 353
K I+ KINKYAFSGGQ S +LHR+LG N +VD+ +YLSFF +DD L+ +Y +G
Sbjct: 311 PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGE 370
Query: 354 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 395
+L+GE+K+ + L E V+ Q RA V +E +D FM L
Sbjct: 371 LLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKL 412
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 472 bits (1216), Expect = e-167
Identities = 205/382 (53%), Positives = 278/382 (72%), Gaps = 5/382 (1%)
Query: 15 QVVSPWEVS--SSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
PWEV ++ IDY+KLIDKFGC+ + + +++R++RLTG+ H F RR +F +HRD
Sbjct: 2 PGSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRD 61
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKC 132
ILD YEKGE FYLYTGRGPSSE+LH+GHLVPF+F +YLQD FKVPLVIQLTDDEK
Sbjct: 62 FEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLF-TKYLQDTFKVPLVIQLTDDEKF 120
Query: 133 MWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 191
++K+ L++EE+ A EN KDIIACGFD TFIF++ +Y+ Y +++++ K ++ ++
Sbjct: 121 IFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA-ELYPDILRIEKKISCSQ 179
Query: 192 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 251
+ IFGF ++GK +FP VQA P+F SSFPH+F G+ + CL+P AIDQDPYFRM RD
Sbjct: 180 IKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRD 239
Query: 252 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQE 311
VAPR+GY KP+ I S F P+LQG KMSAS NS+I+V D+ ++I+NKI KYAFSGGQ
Sbjct: 240 VAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQA 299
Query: 312 SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELV 371
+ E R+LGANL+VD+ +YL F +EDD +LE I K+Y +G ML+GE+K L + L +L
Sbjct: 300 TEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLT 359
Query: 372 ERHQVARAAVTDEMVDAFMAVR 393
+ HQ R A+ D+++ F
Sbjct: 360 KNHQKNREAINDDVIAKFTNKS 381
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 465 bits (1197), Expect = e-164
Identities = 172/397 (43%), Positives = 260/397 (65%), Gaps = 11/397 (2%)
Query: 5 EEKQREEEREQVVSPWEVSSSG------KIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPP 58
+ + EQ ++PW+V IDYDK+I++FGC++ +Q+L DR+++L+G+P
Sbjct: 15 QTQGPGSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPA 74
Query: 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAF 118
H F RRG+ FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ +Y+QDAF
Sbjct: 75 HYFFRRGIVFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLL-CKYMQDAF 133
Query: 119 KVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYK 178
K+ LVIQ+TDDEK +WK++ +E++ REN KDI+ GFD T+IFS+ + F +
Sbjct: 134 KIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEA-SHHFEE 192
Query: 179 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 238
N++K++K + N+ + +FGF +IG+V FP + P F SSF + G CL+P
Sbjct: 193 NILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPA 249
Query: 239 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 298
A+DQDP+FR+ RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ I+
Sbjct: 250 AVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIR 309
Query: 299 NKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGE 358
KI YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE + Y G + + E
Sbjct: 310 KKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKE 369
Query: 359 VKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPL 395
+K++ V+ E V R+Q +R VTD+ + AF+ +
Sbjct: 370 MKEKCVVVIQEFVSRYQESRKRVTDDDLRAFIDINKF 406
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 460 bits (1186), Expect = e-162
Identities = 207/389 (53%), Positives = 281/389 (72%), Gaps = 6/389 (1%)
Query: 8 QREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
E VV+PW V G ++YDKLI FG +D++L++R++R+ G+ PH FLRRG+F
Sbjct: 3 HHHHHHEAVVTPWSVE--GDVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIF 60
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLT 127
F+HRDLN +LD YE G+ FYLYTGRGPSSE++H+GHL+PFMF ++LQD+F+VPLVIQ+T
Sbjct: 61 FSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMF-TKWLQDSFRVPLVIQMT 119
Query: 128 DDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 187
DDEK ++N+ +E+ + + EN KDIIA GFD TFIF DFDY+ G Y+ + K+ +
Sbjct: 120 DDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYM-GCMYRTVAKIERAF 178
Query: 188 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFS-GKDHLRCLIPCAIDQDPYF 246
T ++V G FGF ED+ G+ FP +QA PSF ++FPH+F ++ CLIP AIDQDPYF
Sbjct: 179 TASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYF 238
Query: 247 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 306
R+TRD+APR+GY KPA+I S FFP L G GKMS+S A+ +TD+ K +K+KINK+AF
Sbjct: 239 RLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSSSGT-AVLLTDTEKMVKDKINKHAF 297
Query: 307 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKV 366
SGG + + H LGAN+EVD+P+++LSFFLEDD EL +KKEY G ++TGEVK+ L
Sbjct: 298 SGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINT 357
Query: 367 LTELVERHQVARAAVTDEMVDAFMAVRPL 395
+T + + HQ R VTDE V F + R +
Sbjct: 358 ITAITKTHQEKRKLVTDEDVQLFTSTRIM 386
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 452 bits (1164), Expect = e-159
Identities = 110/389 (28%), Positives = 210/389 (53%), Gaps = 9/389 (2%)
Query: 10 EEEREQVVSPWEV---SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGV 66
Q +P ++ ++ DY++LI+ G + + R+++L+G+ PH +L RGV
Sbjct: 4 HHHHHQTQTPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGV 63
Query: 67 FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQL 126
F A + L+ LD E + +++ + P E + L + F RYLQDAF + ++IQ+
Sbjct: 64 FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKE-VALEEYITLEF-ARYLQDAFNIQVIIQI 121
Query: 127 TDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKC 186
DD K + + ++ E+ +++ + K I+A GF+ KTFI++D+ Y G Y+ + V K
Sbjct: 122 LDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-KMYRTISLVEKA 180
Query: 187 VTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 246
YN V F F D+IGK++ P + F S+ H FS RCL+ +I +
Sbjct: 181 TAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSP--ARCLVLDSIKNVQFH 238
Query: 247 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 306
+ +A + + +P ++ P L G K +++I ++D+AK ++ KINK AF
Sbjct: 239 SIIDQIATTLNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAF 297
Query: 307 SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKV 366
SGG+ + E H+KLG ++D+ + L+ F D+A+++ ++++Y G +L+GE+K+ ++
Sbjct: 298 SGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSAS 357
Query: 367 LTELVERHQVARAAVTDEMVDAFMAVRPL 395
+ + + + + +T + A+++
Sbjct: 358 MKDFIVAYDAKKKPITTAYLKAYISKTKF 386
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 421 bits (1083), Expect = e-146
Identities = 179/451 (39%), Positives = 247/451 (54%), Gaps = 57/451 (12%)
Query: 1 MDKNEEKQREEEREQVVSPWEV------SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLT 54
M + Q P + + + + Y+ +I +FG + L+ R + +T
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMMETDATAEAAAVAYEDIITRFGAAPITDDLLKRFETVT 60
Query: 55 GRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYL 114
G H LRRG+F+AHRD + L YEKG Y+YTGRGPSS ALHLGHL+PF+F +YL
Sbjct: 61 GTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIF-TKYL 119
Query: 115 QDAFKVPLVIQLTDDEKCMW-KNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 173
QDAFK +VIQ+TDDEK + ++LS E REN KDIIACGFD KTFIF + Y+
Sbjct: 120 QDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLS 179
Query: 174 -GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH- 231
Y+ V + + +++ FGF+ + ++G +FPP Q +P + + F L +
Sbjct: 180 LKNRYRFSCLVDRMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPL 239
Query: 232 -----------------------------------------------LRCLIPCAIDQDP 244
CLI I+QDP
Sbjct: 240 PVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDP 299
Query: 245 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKY 304
YFR+ RD+APR+G+ K A + F P LQG KMSASDPNSAIY+TD+ IKNKIN+Y
Sbjct: 300 YFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRY 359
Query: 305 AFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLA 364
AFSGG+++ E HR GA+L VD+ V+YL F++DDAELE +K +Y G +LTGEVK L
Sbjct: 360 AFSGGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLI 419
Query: 365 KVLTELVERHQVARAAVTDEMVDAFMAVRPL 395
+L L++ H R V M+++F + L
Sbjct: 420 GILQGLIKEHAERRDKVDTTMIESFTVKKEL 450
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 273 bits (700), Expect = 1e-89
Identities = 59/342 (17%), Positives = 124/342 (36%), Gaps = 27/342 (7%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVP 121
+ L+ + + G F Y G PS +H+ + + + +
Sbjct: 17 QLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGR-IHIAQALITVMNTNNMIEC-GGQ 74
Query: 122 LVIQLTDDEKCM--WKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFY 177
++I + D M N + + + L R + ACG ++ T S+F ++
Sbjct: 75 MIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYI 134
Query: 178 KNMVKVAKCVTYNKV---VGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHL 232
+ M+ +A+ T ++V I G D + ++ +P +QA F
Sbjct: 135 ERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEG-------- 186
Query: 233 RCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 292
+ IDQ + + A G P + +L G KMS SDP AI++ D
Sbjct: 187 IDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDD 246
Query: 293 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 352
+ + + KI++ + + + L+ + ++E I++++
Sbjct: 247 TEQEVSEKISRAYCTDETF--DNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDF--S 302
Query: 353 GMLTGEVKQRLAKVLTELV----ERHQVARAAVTDEMVDAFM 390
M E+K +A + ++ E + + V ++
Sbjct: 303 SMNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQ 344
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 121 bits (305), Expect = 4e-31
Identities = 68/357 (19%), Positives = 121/357 (33%), Gaps = 56/357 (15%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA-FKVPLVIQLTDDE 130
+ D+L+ + LY G P+ H G+ VP A +V + L D
Sbjct: 28 IIKDVLEV--QKRHLKLYWGTAPTGR-PHCGYFVPMTKLAD-FLKAGCEV--TVLLADLH 81
Query: 131 KCMWKNLSVEESQRLARENAKDII--------ACGFDVTKT-FIFSDFDYVGGAFYKNMV 181
+ + E + AK + + K F+ + + ++
Sbjct: 82 AFLDNMKAPLE---VVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIF 138
Query: 182 KVAKCVTYNKVVGIF----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 237
+++ V+ N + + +P +QA+ L
Sbjct: 139 RLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQALDEQ------------FLDVDCQ 186
Query: 238 CA-IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 296
+DQ F + + P +GY K A + + P L GKMSASDPNS I + + K
Sbjct: 187 FGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQG-GKMSASDPNSKIDLLEEPKQ 245
Query: 297 IKNKINKYAFSGGQ-------ESVELHRKLGANLEVDIPVKYLSFFLEDD---------A 340
+K KIN S G V+ + E+ + FF++
Sbjct: 246 VKKKINSAFCSPGNVEENGLLSFVQYV--IAPIQELKFGTNHFEFFIDRPEKFGGPITYK 303
Query: 341 ELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVRPLPN 397
E +K + + ++K +A + EL+E + A E +A P+
Sbjct: 304 SFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN-NKEFQEASEKGYPVAT 359
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 118 bits (297), Expect = 5e-30
Identities = 55/320 (17%), Positives = 114/320 (35%), Gaps = 38/320 (11%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA---FKVPLVIQ--LTD 128
+++ K Y G PS +H+ + L F + +
Sbjct: 45 DELRVKLLLKRKLICYDGFEPSGR-MHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLN 103
Query: 129 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMV-KVAK 185
++ M +L ++ +++ + +CG ++ S+ Y ++V +++
Sbjct: 104 NK--MSGDL--KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISR 159
Query: 186 CVTYNKVVGIFGFTG-----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCA 239
N++ G E++ ++ +P +Q F L +
Sbjct: 160 SFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIF------------FLNVDICQLG 207
Query: 240 IDQDPYFRMTRDVAPRIGYHKPALIES-SFFPALQGETGKMSASDPNSAIYVTDSAKAIK 298
IDQ + R+ K +I S P L KMS SD NSAI++ DS +
Sbjct: 208 IDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVN 267
Query: 299 NKINK-YAFSGGQE-----SVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 352
KI K Y E + + E ++ K + + L+ ++ +Y G
Sbjct: 268 RKIKKAYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNG 327
Query: 353 GMLTGEVKQRLAKVLTELVE 372
+ ++K +A + +L++
Sbjct: 328 FIHPLDLKDNVAMYINKLLQ 347
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 107 bits (269), Expect = 2e-25
Identities = 58/322 (18%), Positives = 112/322 (34%), Gaps = 48/322 (14%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA---FKVPLVIQ--LTDDEKCMWK 135
EK Y G PS +H+ + A F + L +D+ +
Sbjct: 36 EKKPLIRCYDGFEPSGR-MHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDK--VGG 92
Query: 136 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDFDYVGGAFY-KNMVKVAKCVTYNKV 192
L E+ + + R + A G D+ K F++ S+ Y + ++ + + T ++
Sbjct: 93 EL--EKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARI 150
Query: 193 ---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFR 247
I G T +V +P +Q F L+ + +DQ
Sbjct: 151 KKCCTIMGKTEGTLTAAQVLYPLMQCCDIF------------FLKADICQLGLDQRKVNM 198
Query: 248 MTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAF 306
+ R+ IG KP ++ L+ KMS SDP+SAI++ D+ + + KI + A+
Sbjct: 199 LAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVARKIRQ-AY 257
Query: 307 -------SGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAEL---------EHIKKEYG 350
+ V + + + A E +++ +
Sbjct: 258 CPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFV 317
Query: 351 AGGMLTGEVKQRLAKVLTELVE 372
+ + +K L + L+E
Sbjct: 318 SDEVSEDALKSCLIDEVNALLE 339
Score = 91.1 bits (226), Expect = 5e-20
Identities = 37/289 (12%), Positives = 89/289 (30%), Gaps = 37/289 (12%)
Query: 99 LHLGHLVPFMFTNRYLQDA-FKVPLVI-----QLTDDEKCMWKNLSVEESQRLARENAKD 152
L + + + + V LV+ +D+ + K++ + N
Sbjct: 396 LDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDI-----SAALQVNCAL 450
Query: 153 IIACGFDVTKTFIF-SDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFP 210
+ A G + + ++ + V +A+ + V ++G + G+V
Sbjct: 451 LKAYGLPSSVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYGGEVRN-AGQVIAA 509
Query: 211 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP 270
++ L H + R+ P
Sbjct: 510 LMRVAT-------ALMLSVSH----VISTSLDGHINAFAREYTKERI--DCVQTLEGRIP 556
Query: 271 ALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFS-GGQES---VELHRKL---GANL 323
AL + + +Y+ D+ I+ KI K A+S +E+ + + + L L
Sbjct: 557 ALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKK-AYSAPNEEANPVISVAQHLLAQHGAL 615
Query: 324 EVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
++ E + + G+G + ++K + ++L +
Sbjct: 616 SIERGEANGGNV--SYNTPEALVADCGSGALHPADLKAAVLQLLLDRSA 662
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 99.1 bits (247), Expect = 2e-23
Identities = 71/333 (21%), Positives = 120/333 (36%), Gaps = 53/333 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA-FKVPLVIQLTDDEKCM 133
++ G + Y G PS H+G LV L +A + +
Sbjct: 25 ELKGLLASGARIKGYIGYEPSGV-AHIGWLVWMYKVKD-LVEAGVDF--SVLEATWHAYI 80
Query: 134 WKNL--SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GGAFYKNMVKVAKCVTYN 190
L ++ + AR + + A G V + + ++ +++VAK +
Sbjct: 81 NDKLGGDMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLA 140
Query: 191 KV------VGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQD 243
+V +G E K+ +P +Q F ++ I +DQ
Sbjct: 141 RVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIF------------YMDLDIALGGMDQR 188
Query: 244 PYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------ETGKMSASDPNSAI 288
+ RDVA ++G KP I + +LQG KMS S P +A+
Sbjct: 189 KAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAV 248
Query: 289 YVTDSAKAIKNKINKYAFSGGQ-------ESVELH--RKLGANLEVDIPVKYLSFFLEDD 339
+V DS I+ KI K Q E + G L VD P KY +
Sbjct: 249 FVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGP--VEY 306
Query: 340 AELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
E ++++Y G + ++K +A+ L E+V
Sbjct: 307 TSYEELERDYTDGRLHPLDLKNAVAESLIEVVR 339
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 97.6 bits (243), Expect = 9e-23
Identities = 65/347 (18%), Positives = 119/347 (34%), Gaps = 66/347 (19%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA-FKVPLVI-----QLTD 128
++ +E G Y G S +HLG + Q A K + + + D
Sbjct: 23 NLRHLFEIGAPLQHYIGFEISGY-IHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIND 81
Query: 129 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF--SDFDYVGGAFYKNMVKVAKC 186
+ + + K I G D K S+ G +++ ++ ++K
Sbjct: 82 KLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEI-LEKGDYWQTVIDISKN 140
Query: 187 VTYNKVVGIF-----GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAI 240
VT ++V+ K+ +P +Q F + + +
Sbjct: 141 VTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIF------------YQGVTIAHAGM 188
Query: 241 DQDPYFRMTRDVAPRIGYH---------KPALIESSFFPALQGE---------------- 275
DQ + +VA ++ YH KP + LQ
Sbjct: 189 DQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKA 248
Query: 276 TGKMSASDPNSAIYVTDSAKAIKNKINKYAF--------SGGQESVE--LHRKLGANLEV 325
KMS S P SA+++ DS + I+ K+ K AF + + VE + R+ V
Sbjct: 249 QMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAREVRYNPVLDWVEYIIFREEPTEFTV 307
Query: 326 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
P K+ E +K+++ G + ++K +A+ L L+E
Sbjct: 308 HRPAKFGG--DVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLE 352
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 81.0 bits (200), Expect = 4e-17
Identities = 56/319 (17%), Positives = 111/319 (34%), Gaps = 40/319 (12%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA-FKVPLVI----QLTDD 129
+ L K + +Y G + + H+ + VP M A +V ++ D+
Sbjct: 25 EKLKEILKERELKIYWGTATTGK-PHVAYFVP-MSKIADFLKAGCEVTILFADLHAYLDN 82
Query: 130 EKCMWKNLSVEESQRLARENAKDII-ACGFDVTKTFIFSDFDYVGGAFY-KNMVKVAKCV 187
K W+ +E K ++ + G + K DY Y ++ +++ V
Sbjct: 83 MKAPWEL--LELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVV 140
Query: 188 TYNKVVGIFGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQ 242
T + + + +P +QA+ +L+ IDQ
Sbjct: 141 TQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEE------------YLKVDAQFGGIDQ 188
Query: 243 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 302
F P +GY K + + P L G KMS+S+ S I + D + +K K+
Sbjct: 189 RKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKKKLK 246
Query: 303 KYAFSGGQES-------VELH-RKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGM 354
K G ++ L + + K+ ++K++ A +
Sbjct: 247 KAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTA--YVDLEKDFAAEVV 304
Query: 355 LTGEVKQRLAKVLTELVER 373
G++K + L +L++
Sbjct: 305 HPGDLKNSVEVALNKLLDP 323
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 76.9 bits (190), Expect = 6e-16
Identities = 74/321 (23%), Positives = 132/321 (41%), Gaps = 52/321 (16%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA-FKVPLVI-----QLTD 128
++ E EK Y G PS E +HLGH++ + LQ+A F++ +++ L +
Sbjct: 22 ELRQLIETKEKPRAYVGYEPSGE-IHLGHMMT-VQKLMDLQEAGFEIIVLLADIHAYLNE 79
Query: 129 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFY-KNMVKVAKC 186
K + EE +A N K IA G D ++ F+ +Y Y +++K+A+
Sbjct: 80 ------KG-TFEEIAEVADYNKKVFIALGLDESRAKFVLGS-EYQLSRDYVLDVLKMARI 131
Query: 187 VTYNKVVGIFGFTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-ID 241
T N+ + + ++ +P +QA+ HL + ID
Sbjct: 132 TTLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIA------------HLGVDLAVGGID 179
Query: 242 QDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 301
Q + R+ PR+GY P + + L G KMS+S + I V D + ++ KI
Sbjct: 180 QRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPPEEVERKI 236
Query: 302 NKYAFSGGQ----------ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 351
K G + L R + V+ K+ + A E + +++ +
Sbjct: 237 RKAYCPAGVVEENPILDIAKYHILPRF--GKIVVERDAKFGGDV--EYASFEELAEDFKS 292
Query: 352 GGMLTGEVKQRLAKVLTELVE 372
G + ++K +AK L L+E
Sbjct: 293 GQLHPLDLKIAVAKYLNMLLE 313
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 72.6 bits (179), Expect = 2e-14
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 16/141 (11%)
Query: 241 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 292
DQ P TR++ R + L P L G KMS S N AI + D
Sbjct: 171 DQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLGN-AIALGD 228
Query: 293 SAKAIKNKINK-YAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 351
SA + K+ Y G + + R G + +L F D A ++ +K +Y A
Sbjct: 229 SADEVARKVMGMYTDPGHLRASDPGRVEGNPV-----FTFLDAFDPDPARVQALKDQYRA 283
Query: 352 GGMLTGEVKQRLAKVLTELVE 372
GG+ +VK+ L VL ++
Sbjct: 284 GGLGDVKVKKHLIDVLNGVLA 304
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 68.7 bits (169), Expect = 4e-13
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 15/140 (10%)
Query: 241 DQDPYFRMTRDVAPRIGYH--------KPALIESSFFPALQGETGKMSASDPNSAIYVTD 292
DQ + +TR++A R Y + L P G KMS S N I +
Sbjct: 162 DQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGR--KMSKSYGN-IINLEI 218
Query: 293 SAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 352
S K ++ I + + + + R N E KY F + E + + +
Sbjct: 219 SEKELEQTILR-MMT---DPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTA 274
Query: 353 GMLTGEVKQRLAKVLTELVE 372
+ + K+ L K + +
Sbjct: 275 SIGCVDCKKLLLKNMKRKLA 294
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 67.7 bits (166), Expect = 9e-13
Identities = 66/315 (20%), Positives = 120/315 (38%), Gaps = 49/315 (15%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA-FKVPLVI-----QLTD 128
+ L K ++ Y G PS + +HLGH + + LQ+A F + +++ L
Sbjct: 18 EELREVLKKDEKSAYIGFEPSGK-IHLGHYLQ-IKKMIDLQNAGFDIIILLADLAAYLNQ 75
Query: 129 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI-FSDFDYVGGAFYKNMVKVAKCV 187
K +E +++ N K A G ++ S+F + N+ ++A
Sbjct: 76 --KGEL-----DEIRKIGDYNKKVFEAMGLK--AKYVYGSEFQL-DKDYTLNVYRLALKT 125
Query: 188 TYNKVVGIFGFTG----EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQ 242
T + + +V +P +Q S +L + ++Q
Sbjct: 126 TLKRARRSMELIAREDENPKVAEVIYPIMQVNTSH------------YLGVDVAVGGMEQ 173
Query: 243 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIN 302
+ R++ P+ K I + L GE GKMS+S N I V DS + I+ KI
Sbjct: 174 RKIHMLARELLPK----KVVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDSPEEIRAKIK 227
Query: 303 K-YAFSGGQES--VELHRK--LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG 357
K Y +G E + K L L + P K+ E ++ + +
Sbjct: 228 KAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGD--LTVNSYEELESLFKNKELHPM 285
Query: 358 EVKQRLAKVLTELVE 372
+K +A+ L +++E
Sbjct: 286 YLKNAVAEELIKILE 300
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 61.4 bits (150), Expect = 1e-10
Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 241 DQDPYFRMTRDVAPRIGYH------KP-ALIESSF--FPALQGETGKMSASDPNSAIYVT 291
DQ + +TR++A R + +P AL+ P + G KMS S N I +
Sbjct: 150 DQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLGN-TIGLL 207
Query: 292 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 351
+ ++I KI + + + E I YLS+F +E +K+EY
Sbjct: 208 EPEESIWQKIQH-LPD---DPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRK 262
Query: 352 GGMLTGEVKQRLAKVLTELVE 372
G+ T VK+ L L E +
Sbjct: 263 AGVGTYVVKRILFDHLMEALR 283
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 4e-08
Identities = 67/420 (15%), Positives = 125/420 (29%), Gaps = 134/420 (31%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGR-----PPHVFLRRGVFFAHRDLN 74
V ++ +L ++F ++ L + + P + + F +
Sbjct: 20 LLVPTASFFIASQLQEQF-----NKILPEPTEGFAADDEPTTPAELVGK---FLGY---- 67
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALH--LGHLVPFMFTNRYLQD----AFKVPLVIQLTD 128
+ E + G + L+ L F N YL+ A L L +
Sbjct: 68 -VSSLVEPSKV-------GQFDQVLNLCLTE-----FENCYLEGNDIHALAAKL---LQE 111
Query: 129 DEKCMWKNLSVEESQRLARENAKDII----------ACGFDVTKTF-IFSDFDYVGG--- 174
++ + K + ++ AR AK A G + IF GG
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGN 165
Query: 175 --AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF--------PH 224
+++ + + + TY+ +VG + + ++ + A F P
Sbjct: 166 TDDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 225 LFSGKDHLRCLIPCAIDQDP---------YFRMTRDVAPRIGYHKPALIESSFFPALQGE 275
KD+L IP + P Y + +G+ P L+G
Sbjct: 224 NTPDKDYL-LSIPISC---PLIGVIQLAHYVVTAK----LLGFT-PG----ELRSYLKGA 270
Query: 276 TGK---------MSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVD 326
TG ++ +D + + KAI F G E +
Sbjct: 271 TGHSQGLVTAVAIAETDSWESFF-VSVRKAI-----TVLFFIGVRCYEAY---------- 314
Query: 327 IPVKYLSFFLEDDAELEHIKKEYGAGG---ML--TG----EVKQRLAKVLTELVERHQVA 377
P L + +D+ E G ML + +V+ + K + L QV
Sbjct: 315 -PNTSLPPSILEDSL------ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Score = 47.4 bits (112), Expect = 8e-06
Identities = 53/308 (17%), Positives = 90/308 (29%), Gaps = 130/308 (42%)
Query: 95 SSEALHLGH-------LVPFMFTNRY-----LQDAFKVPLVIQLT----DDEKCMWKNLS 138
S+ L L H LVP T + LQ+ F L DDE +
Sbjct: 5 STRPLTLSHGSLEHVLLVP---TASFFIASQLQEQFNKILPEPTEGFAADDE-----PTT 56
Query: 139 VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI--- 195
E + + F+ + ++V+ +K +++V+ +
Sbjct: 57 PAEL--VGK----------------FL---------GYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 196 -F--GF-TGED-HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 250
F + G D H L K+ ++ Y R
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTT--------LVKTKELIKN----------YIT-AR 130
Query: 251 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQ 310
+A R + K + S+ F A + N+ + AI F GGQ
Sbjct: 131 IMAKR-PFDKKS--NSALFRA---------VGEGNAQLV------AI--------F-GGQ 163
Query: 311 ESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTEL 370
G + Y EL + + Y L G++ + A+ L+EL
Sbjct: 164 ---------GNTDD------YFE-------ELRDLYQTYHV---LVGDLIKFSAETLSEL 198
Query: 371 VERHQVAR 378
+ A
Sbjct: 199 IRTTLDAE 206
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 51.7 bits (125), Expect = 2e-07
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)
Query: 241 DQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPNSAIYVT 291
DQ + + RD+A ++ P A + E + G KMS S N I +
Sbjct: 148 DQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--KMSKSYQN-TIDIF 204
Query: 292 DSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGA 351
S K +K +I+ + + N+ K FL D++ + ++ Y
Sbjct: 205 SSEKTLKKQISS-IVTDSTALEDPKDHENCNI-----FKIAKLFL-DESGQKELQIRYEK 257
Query: 352 GGMLTGEVKQRLAKVLTELVE 372
GG G K L +++ +
Sbjct: 258 GGEGYGHFKIYLNELVNAYFK 278
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 48.0 bits (115), Expect = 2e-06
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 272 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEV 325
LQ T KMS SD N + I + + K++ KI + + ++ +K G NL +
Sbjct: 201 LQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNL-L 259
Query: 326 DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
DI LS + ++ ++ G + G +K +A ++ ++
Sbjct: 260 DI----LSGV--TGQSIPELEAQF--TGQMYGHLKGAVADAVSGMLS 298
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 47.6 bits (114), Expect = 3e-06
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 30/158 (18%)
Query: 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFP--------------ALQGETGKMS 280
+P DQ + + RD+A R ++ E F +LQ T KMS
Sbjct: 146 QVPVGSDQKQHLELARDIATR--FNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMS 203
Query: 281 ASDPN--SAIYVTDSAKAIKNKINKY---AFSGGQESVELHRKLGA-NLEVDIPVKYLSF 334
SD N + I + + K+I KINK A + + + ++ K G NL + + S
Sbjct: 204 KSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANL-MGL----YSA 258
Query: 335 FLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
I+ +Y AG + G K+ + + + ++E
Sbjct: 259 A--TGKTFAEIEAQY-AGVEMYGPFKKDVGEAVVAMLE 293
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 47.7 bits (114), Expect = 3e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 272 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 326
L KMS SDPN + I + D K ++ KI A S G + K G NL +
Sbjct: 220 LNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGVSNL-LT 277
Query: 327 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
I S + +E ++ +Y G GE K LA+V+ ++
Sbjct: 278 I----YSIL--GNTTIEELEAKY--EGKGYGEFKGDLAEVVVNALK 315
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 47.1 bits (113), Expect = 4e-06
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 272 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 326
L T KMS SDPN + I + D AK I+ KI A S G + K G NL ++
Sbjct: 186 LVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AVTDSEGTIRYDKEAKPGISNL-LN 243
Query: 327 IPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
I Y + +E ++++Y G G K LA+V+ E +
Sbjct: 244 I---YSTL---SGQSIEELERQY--EGKGYGVFKADLAQVVIETLR 281
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 272 LQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAF--SGGQESVELHRKLGA-NLEVD 326
L T KMS S N IY+ D + + KI + A S + + G N+ +
Sbjct: 196 LFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQ-ATTDSFNKIRFASKTQPGVTNM-LT 253
Query: 327 IPVKYLSFF-------LEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVE 372
I L + ++ + ++K L + L+
Sbjct: 254 I----LKALLKEPVNQSLTNQLGNDLEAYF--STKSYLDLKNALTEATVNLLV 300
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 1e-05
Identities = 42/380 (11%), Positives = 85/380 (22%), Gaps = 150/380 (39%)
Query: 32 KLIDKF--GCQRL----DQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
K + F C+ L + + D + T H L+ E
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTT-------------HISLDHHSMTLTPDEV 303
Query: 86 ---FYLYTGRGPSS---EALHLGHLVPFMFTNRYLQDAFKVPLVIQL----TDDEKCMWK 135
Y P E L + P + + D W
Sbjct: 304 KSLLLKYLDCRPQDLPREVL-TTN-----------------PRRLSIIAESIRDGLATWD 345
Query: 136 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 195
N + + + II +V + + + + +
Sbjct: 346 NW-----KHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRLS-------------V 380
Query: 196 FGFTGED-HIGKVSFPPVQAVPSF----PSSFPHLFSGKDHLRCLIPCAIDQDP------ 244
F HI P + S + K H L+ ++ P
Sbjct: 381 FP---PSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSLV----EKQPKESTIS 427
Query: 245 ----YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 300
Y + + H+ ++++ P D + I
Sbjct: 428 IPSIYLELKVKLENEYALHR-SIVDHYNIP---------KTFDSD---------DLIPPY 468
Query: 301 INKYAFS---------GGQESVELHRKL--------------GANLEVDIPV-------- 329
+++Y +S E + L R + +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 330 KYLSFFLEDDAELEHIKKEY 349
Y + ++D + E +
Sbjct: 529 FYKPYICDNDPKYERLVNAI 548
Score = 38.7 bits (89), Expect = 0.004
Identities = 62/488 (12%), Positives = 130/488 (26%), Gaps = 152/488 (31%)
Query: 25 SGKIDY----------DKLIDKFGCQRLDQSL------------------VDRVQRLTGR 56
+G+ Y D +D F C+ + V RL
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW- 69
Query: 57 PPHVFLRRGVFFAHRDLNDILDA-YEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQ 115
L + + + ++L Y+ +L + P M T Y++
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYK-----FLM-------SPIKTEQRQPSMMTRMYIE 114
Query: 116 DAFKVPLVIQLTDD-----EKCMWK------NLSVEES-----------QRLARENAKDI 153
++ Q+ + K L ++ +A +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS- 173
Query: 154 IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF----------GFTGEDH 203
+ V F F+ + + C + V+ + + DH
Sbjct: 174 ----YKVQCKMDF-------KIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 204 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAID--QDP----YF----RM---TR 250
S + S + L K + CL+ + Q+ F ++ TR
Sbjct: 220 ----SSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 251 D--VAPRIG---YHKPALIESS--FFP----ALQGETGKMSASD-PNSAI---------- 288
V + +L S P +L + D P +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 289 --YVTDSAKAIKN--KINKYAFSGGQE-SVE-----LHRKLGANL-----EVDIPVKYLS 333
+ D N +N + E S+ +RK+ L IP LS
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 334 FFLEDD--AELEHIKKEYGAGGMLTGEVKQRLAKV--LTELVERHQVARAAVTDEMVDAF 389
D +++ + + ++ + K+ + + ++ A+ +VD +
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 390 MAVRPLPN 397
+ +
Sbjct: 454 NIPKTFDS 461
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group
I intron; HET: TYR; 1.95A {Neurospora crassa} PDB:
2rkj_A
Length = 392
Score = 40.4 bits (95), Expect = 7e-04
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117
RG + + + + Y G P++ +LH+GHL+P M ++
Sbjct: 43 RGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLM-PLFWMYLE 95
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; HET: AZY; 1.80A {Escherichia
coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Length = 322
Score = 39.1 bits (92), Expect = 0.002
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117
RG+ D + + +G L G P++++LHLGHLVP + + Q A
Sbjct: 13 RGLVAQVTDEEALAERLAQG-PIALVCGFDPTADSLHLGHLVPLL-CLKRFQQA 64
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 38.9 bits (91), Expect = 0.002
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117
L+RG + ++L ++G + G P+ LHLGH V R Q+
Sbjct: 15 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLR-KMRQFQEL 68
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA
synthetase, tyrrs, ligase, tyrosine, RNA-binding,
ATP-binding; 2.9A {Mycobacterium tuberculosis}
Length = 432
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117
RG+ DL+ + ++G +Y G P++ +LH GHLVP + T R Q A
Sbjct: 12 RGLIAQSTDLDTLAAEAQRG-PMTVYAGFDPTAPSLHAGHLVPLL-TLRRFQRA 63
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase,
protein-substrate complex, ATP-BI ligase, mitochondrion,
nucleotide-binding, protein biosynth; HET: YSA; 2.20A
{Homo sapiens} PDB: 3zxi_A*
Length = 356
Score = 38.4 bits (90), Expect = 0.003
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117
+L ++ D +Y G P++++LH+GHL+ + +LQ A
Sbjct: 33 ELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALL-GLFHLQRA 77
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design,
ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP:
c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Length = 420
Score = 37.9 bits (89), Expect = 0.005
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117
RG+ + D I D K + LY G P++++LH+GHL+PF+ T R Q+
Sbjct: 12 RGLIYQQTDEQGIEDLLNKE-QVTLYCGADPTADSLHIGHLLPFL-TLRRFQEH 63
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E*
1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Length = 419
Score = 37.6 bits (88), Expect = 0.005
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA 117
RG+ D + + + + LY G P++++LH+GHL + T R Q A
Sbjct: 10 RGLVNQTTDEDGLRKLLNEE-RVTLYCGFDPTADSLHIGHLATIL-TMRRFQQA 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.71
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 278 KMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVE 314
K+ AS +Y DSA A+ I A ++E
Sbjct: 24 KLQAS---LKLYADDSAPAL--AIK--A------TME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.96
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 1 MDKNEEKQREEEREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+D + +E RE+ K ++++ ++ +Q V++ +
Sbjct: 101 LDAASKVMEQEWREKA--------------KKDLEEWNQRQSEQ--VEKNKINNRIADKA 144
Query: 61 FLRRGVFFAHRDLNDIL 77
F D DI+
Sbjct: 145 FY------QQPD-ADII 154
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.9 bits (65), Expect = 2.4
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 282 SDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLGAN 322
+ I+ + I + A + E++E R GA+
Sbjct: 80 ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGAD 120
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 28.1 bits (63), Expect = 5.4
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 363 LAKVLTELV--ERHQVARAAVTDEMVDAFMAV 392
A+ + E + A V ++M++AF
Sbjct: 270 KAEQIAEAIGKGDFGTAIGLVDEDMIEAFSIA 301
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad,
strand-helix MO hydrolase; 1.20A {Salmonella
typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Length = 229
Score = 27.7 bits (61), Expect = 6.5
Identities = 26/163 (15%), Positives = 53/163 (32%), Gaps = 15/163 (9%)
Query: 159 DVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK-----VSFPPVQ 213
D ++ VGG ++K ++ + G +IG ++ P ++
Sbjct: 72 DPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPTIR 131
Query: 214 AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQ 273
P P+ F D L P I+ P+F + + + E +
Sbjct: 132 TTNDMPIVDPNGFDALD----LFPLQIN--PHFTNALPEGHKGETREQRIRELL----VV 181
Query: 274 GETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGGQESVELH 316
+ + I V++ + + F G+E+V L
Sbjct: 182 APELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGEEAVALE 224
>1f07_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel; HET: MPO; 2.00A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.1.16.3
Length = 321
Score = 27.3 bits (61), Expect = 8.5
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 324 EVDIPVKYLSFFLEDDAE--LEHIKKE--YGAGGM---------LTGEVKQRLAKVLTEL 370
++D+ Y +++DA K + A G L + ++ ++L +
Sbjct: 198 DIDVAA-YTCCSIDEDAAAAANAAKIVVAFIAAGSPPPVFERHGLPADTGKKFGELLGK- 255
Query: 371 VERHQVARAAVTDEMVDAFMAV 392
A AV D +++AF V
Sbjct: 256 -GDFGGAIGAVDDALMEAFSVV 276
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 26.9 bits (59), Expect = 10.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 121 PLVIQLTDDEKCMWKNLSVEE 141
L + EK W +LS++E
Sbjct: 57 ASQKALKEKEKASWSSLSIDE 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,333,900
Number of extensions: 401442
Number of successful extensions: 1263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1163
Number of HSP's successfully gapped: 57
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)