RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015773
(400 letters)
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 355 bits (913), Expect = e-122
Identities = 238/386 (61%), Positives = 305/386 (79%), Gaps = 5/386 (1%)
Query: 14 EQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HR
Sbjct: 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEK 131
D+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+F ++LQD F VPLVIQ+TDDEK
Sbjct: 61 DMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIF-TKWLQDVFNVPLVIQMTDDEK 119
Query: 132 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTY 189
+WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+
Sbjct: 120 YLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTF 179
Query: 190 NKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT 249
N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQDPYFRMT
Sbjct: 180 NQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMT 239
Query: 250 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKINKYAFSGG 309
RDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+NK+AFSGG
Sbjct: 240 RDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGG 299
Query: 310 QESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTE 369
++++E HR+ G N +VD+ YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL
Sbjct: 300 RDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQP 359
Query: 370 LVERHQVARAAVTDEMVDAFMAVRPL 395
L+ HQ R VTDE+V FM R L
Sbjct: 360 LIAEHQARRKEVTDEIVKEFMTPRKL 385
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 130 bits (328), Expect = 2e-35
Identities = 49/326 (15%), Positives = 98/326 (30%), Gaps = 27/326 (8%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLV 123
RG+ D D L E+ LY G P++++LH+GHL + R Q A P+
Sbjct: 10 RGLVNQTTDE-DGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTM-RRFQQAGHRPIA 67
Query: 124 IQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY------VGGAFY 177
+ + E A+E + A + F+ + D +
Sbjct: 68 LVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWI 127
Query: 178 KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSSFPHLFSGKDHLRCLI 236
+ + K + ++ + + S+ + F
Sbjct: 128 GPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCR 187
Query: 237 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 296
D + +T + A P + G + I++
Sbjct: 188 LQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKT- 246
Query: 297 IKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGGML 355
S + N + ++YL +F E+E +++E
Sbjct: 247 ---------------SPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEK 291
Query: 356 TGEVKQRLAKVLTELVERHQVARAAV 381
++ LA+ +T+LV + R A+
Sbjct: 292 R-AAQKTLAEEVTKLVHGEEALRQAI 316
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 125 bits (313), Expect = 3e-33
Identities = 52/332 (15%), Positives = 102/332 (30%), Gaps = 38/332 (11%)
Query: 62 LRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA-- 117
+ R + L +IL K + +Y G + + H+ + VP A
Sbjct: 11 ITRNLQEVLGEEKLKEIL----KERELKIYWGTATTGK-PHVAYFVPMSK-IADFLKAGC 64
Query: 118 ---FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 174
+ D+ K W L + + G + K DY
Sbjct: 65 EVTILFADLHAYLDNMKAPW-ELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLS 123
Query: 175 AFY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 229
Y + V + + + + + +P +QA+
Sbjct: 124 KEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKV------- 176
Query: 230 DHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIY 289
IDQ F P +GY K + + P L KMS+S+ S I
Sbjct: 177 ----DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMSSSEEESKID 230
Query: 290 VTDSAKAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE------DDAELE 343
+ D + +K K+ K G ++ + +++ E
Sbjct: 231 LLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYV 290
Query: 344 HIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 375
++K++ A + G++K + L +L++ +
Sbjct: 291 DLEKDFAAEVVHPGDLKNSVEVALNKLLDPIR 322
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 110 bits (276), Expect = 5e-28
Identities = 46/327 (14%), Positives = 103/327 (31%), Gaps = 26/327 (7%)
Query: 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDA--F 118
RG+ + D ++ E+ LY G P++++LH+GHL+PF+ R Q+
Sbjct: 8 LKWRGLIYQQTDE-QGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTL-RRFQEHGHR 65
Query: 119 KVPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-- 175
+ L+ T K+ + + I+ F +
Sbjct: 66 PIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRD 125
Query: 176 FYKNMVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 234
+ + ++ Y K VG+ G + ++ ++ F +
Sbjct: 126 WLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELN 185
Query: 235 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 294
D + +T + + P + GK + A+++
Sbjct: 186 CKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAE- 244
Query: 295 KAIKNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFF-LEDDAELEHIKKEYGAGG 353
+ S + N + +K+L +F E++ +++
Sbjct: 245 ---------------KTSPYEFYQFWINQSDEDVIKFLKYFTFLGKEEIDRLEQSKNEAP 289
Query: 354 MLTGEVKQRLAKVLTELVERHQVARAA 380
L E ++ LA+ +T+ + A
Sbjct: 290 HLR-EAQKTLAEEVTKFIHGEDALNDA 315
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 103 bits (257), Expect = 2e-25
Identities = 43/323 (13%), Positives = 86/323 (26%), Gaps = 32/323 (9%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVP 121
L+RG + ++L ++G + G P+ LHLGH V R Q+
Sbjct: 11 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKM-RQFQELGHKV 68
Query: 122 LVIQ---LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYK 178
++I ++ + F+ + +
Sbjct: 69 VLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWL 128
Query: 179 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIP 237
+ + V ++ + + K + +R +
Sbjct: 129 EGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEM 188
Query: 238 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 297
DQ + R+V G L G ++ I +T+ +A+
Sbjct: 189 GGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMS--KSLDNYIGLTEPPEAM 246
Query: 298 KNKINKYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTG 357
K+ + + Y D E E I+ AG +
Sbjct: 247 FKKLM-------------------RVPDPLLPSYFRLL--TDLEEEEIEALLKAGPV--- 282
Query: 358 EVKQRLAKVLTELVERHQVARAA 380
+ LA++LT Q+
Sbjct: 283 PAHRVLARLLTAAYALPQIPPRI 305
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 95.8 bits (237), Expect = 6e-23
Identities = 53/323 (16%), Positives = 105/323 (32%), Gaps = 35/323 (10%)
Query: 62 LRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFK 119
++R + +L ++L EK Y G PS + +HLGH + LQ+A
Sbjct: 7 IKRNTSEIISEEELREVLKKDEKS----AYIGFEPSGK-IHLGHYLQIKKM-IDLQNA-G 59
Query: 120 VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-FYK 178
++I L D + + ++E +++ N K A G +
Sbjct: 60 FDIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVY 119
Query: 179 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IP 237
+ + + + E+ P + +L
Sbjct: 120 RLALKTTLKRARRSMELIAREDENPKVAEVIYP-----------IMQVNDIHYLGVDVAV 168
Query: 238 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 297
++Q + R+ + K I + L GE +S + I V DS + I
Sbjct: 169 GGMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMSSSKGNFIAVDDSPEEI 222
Query: 298 KNKINKYAFSGGQESVELHRK-----LGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAG 352
+ KI K G + L L + P K+ E ++ +
Sbjct: 223 RAKIKKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDL--TVNSYEELESLFKNK 280
Query: 353 GMLTGEVKQRLAKVLTELVERHQ 375
+ ++K +A+ L +++E +
Sbjct: 281 ELHPMDLKNAVAEELIKILEPIR 303
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 81.7 bits (201), Expect = 6e-18
Identities = 52/295 (17%), Positives = 101/295 (34%), Gaps = 21/295 (7%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAR 147
+++G PS + +G+ + + LQ + + D + E ++ R
Sbjct: 4 IFSGIQPSGV-ITIGNYIGALRQFVELQHEYNC--YFCIVDQHA-ITVWQDPHELRQNIR 59
Query: 148 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY----NKVVGIFGFTGEDH 203
A +A G D T+ +F + A M++ + +
Sbjct: 60 RLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVS 119
Query: 204 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 263
G +++PP+ A + + G+D + + +D R + + +
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELT---RDLAERFNKRYGELFTIPEARI 176
Query: 264 I-ESSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKINKYAFSGGQESVELHRKLG 320
+ +L T KMS SDPN + I + D AK I+ KI
Sbjct: 177 PKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEA-- 234
Query: 321 ANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 375
+ + S +E ++++Y G G K LA+V+ E + Q
Sbjct: 235 -KPGISNLLNIYSTL--SGQSIEELERQYEGKGY--GVFKADLAQVVIETLRPIQ 284
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.4 bits (62), Expect = 1.2
Identities = 7/58 (12%), Positives = 14/58 (24%)
Query: 28 IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
+ I + V+ + R + L DI+ + K
Sbjct: 132 LSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVTCVQSSRK 189
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 28.4 bits (62), Expect = 1.7
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAF 118
L+ + E F L+ G ++ LH+GH + N+ L+D
Sbjct: 40 ALEKNKGNETFILHDGPPYANGNLHMGHAL-----NKILKDFI 77
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 27.3 bits (59), Expect = 3.0
Identities = 10/88 (11%), Positives = 25/88 (28%)
Query: 71 RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTNRYLQDAFKVPLVIQLTDDE 130
+++ I +A EKG + TGR G + + ++
Sbjct: 32 ENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTIVYDQIGY 91
Query: 131 KCMWKNLSVEESQRLARENAKDIIACGF 158
+ + + + L + +
Sbjct: 92 TLLDETIETDVYAELISYLVEKNLVNQT 119
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus
aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Length = 96
Score = 25.8 bits (57), Expect = 3.4
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 354 MLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAF 389
MLTG+ K+ L + + Q+ + + + M+
Sbjct: 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQI 36
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 26.3 bits (57), Expect = 5.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 357 GEVKQRLAKVLTELVE 372
G+V L+ + ELVE
Sbjct: 1 GQVVLSLSTAVKELVE 16
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
{Thermotoga maritima [TaxId: 2336]}
Length = 105
Score = 25.6 bits (56), Expect = 5.4
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 337 EDDAELEHIKKEY----GAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFM-A 391
ED + + G G + +L L ++++ + + +T +++D
Sbjct: 33 EDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITSDLLDKIFAG 92
Query: 392 VRPLPNMFD 400
V + M D
Sbjct: 93 VDMITRMVD 101
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 24.7 bits (54), Expect = 5.8
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 353 GMLTGEVKQRLAKVLTELVERH 374
L + K LA +T+++ RH
Sbjct: 10 RELDEQQKAALAADITDVIIRH 31
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus
[TaxId: 274]}
Length = 134
Score = 25.6 bits (56), Expect = 7.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 355 LTGEVKQRLAKVLTELVERHQVARAAVTD 383
L G +R +VL E + A + D
Sbjct: 3 LYGAPYERAVEVLEETLRETGARYALLID 31
>d2i5ea1 c.68.1.21 (A:1-208) Hypothetical protein MM2497
{Methanosarcina mazei [TaxId: 2209]}
Length = 208
Score = 26.1 bits (57), Expect = 7.7
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 357 GEVKQRLAKVLTELVERHQVARAAVTD 383
K RL+ VL+ ER + +
Sbjct: 10 AGAKSRLSPVLSL-QEREEFVELMLNQ 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,526,917
Number of extensions: 74300
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 21
Length of query: 400
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,213,086
Effective search space: 379695918
Effective search space used: 379695918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)