Query 015774
Match_columns 400
No_of_seqs 253 out of 1420
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0552 FtsY Signal recognitio 99.7 5.2E-17 1.1E-21 162.0 15.6 205 80-324 32-247 (340)
2 PF06414 Zeta_toxin: Zeta toxi 99.7 6.3E-17 1.4E-21 149.5 13.7 135 208-396 11-145 (199)
3 COG2074 2-phosphoglycerate kin 99.7 6.9E-17 1.5E-21 156.1 9.1 183 153-352 36-249 (299)
4 PRK10416 signal recognition pa 99.6 1.5E-13 3.3E-18 137.1 17.8 200 80-323 15-221 (318)
5 PRK12337 2-phosphoglycerate ki 99.4 8.9E-13 1.9E-17 137.3 13.7 194 138-352 188-423 (475)
6 PRK04220 2-phosphoglycerate ki 99.4 1.4E-12 3E-17 129.5 12.4 179 156-352 41-252 (301)
7 PF13671 AAA_33: AAA domain; P 99.4 4.9E-12 1.1E-16 108.8 11.8 92 214-322 1-94 (143)
8 COG0645 Predicted kinase [Gene 99.3 6.2E-12 1.3E-16 115.4 11.2 123 212-355 1-126 (170)
9 PRK10867 signal recognition pa 99.2 4.4E-11 9.6E-16 124.1 12.1 173 116-323 29-208 (433)
10 TIGR01425 SRP54_euk signal rec 99.2 1.2E-10 2.5E-15 120.8 14.3 176 113-323 26-207 (429)
11 PRK12339 2-phosphoglycerate ki 99.2 7.6E-11 1.7E-15 110.3 11.3 132 211-352 2-159 (197)
12 PHA02530 pseT polynucleotide k 99.2 1.6E-10 3.5E-15 112.1 12.3 98 212-322 2-99 (300)
13 TIGR00959 ffh signal recogniti 99.2 2.5E-10 5.5E-15 118.4 13.2 177 112-322 24-206 (428)
14 COG0541 Ffh Signal recognition 99.1 3.3E-10 7.2E-15 116.8 12.8 183 105-325 18-209 (451)
15 TIGR00064 ftsY signal recognit 99.1 4E-09 8.6E-14 103.3 17.0 168 113-322 2-178 (272)
16 PRK06762 hypothetical protein; 99.1 7.9E-10 1.7E-14 98.4 10.0 90 212-322 2-92 (166)
17 TIGR01663 PNK-3'Pase polynucle 99.1 6.5E-10 1.4E-14 117.9 10.4 79 209-322 366-444 (526)
18 cd00227 CPT Chloramphenicol (C 99.0 1E-09 2.2E-14 99.2 9.5 101 212-317 2-105 (175)
19 PRK00771 signal recognition pa 99.0 1.7E-09 3.6E-14 112.6 12.2 189 94-322 3-199 (437)
20 PF07931 CPT: Chloramphenicol 99.0 3.5E-09 7.7E-14 97.7 11.2 125 213-392 2-130 (174)
21 PRK14974 cell division protein 99.0 3.2E-09 6.8E-14 107.2 11.8 174 115-323 64-247 (336)
22 TIGR03574 selen_PSTK L-seryl-t 99.0 3.3E-09 7.1E-14 101.2 10.2 92 214-322 1-92 (249)
23 cd02021 GntK Gluconate kinase 98.9 6.3E-09 1.4E-13 91.0 10.7 94 214-320 1-94 (150)
24 TIGR00455 apsK adenylylsulfate 98.9 6.4E-09 1.4E-13 94.5 10.2 100 209-322 15-114 (184)
25 PF01583 APS_kinase: Adenylyls 98.9 5.5E-09 1.2E-13 95.0 9.1 97 211-321 1-97 (156)
26 PRK12338 hypothetical protein; 98.9 5.5E-09 1.2E-13 104.8 8.9 117 210-334 2-153 (319)
27 cd02027 APSK Adenosine 5'-phos 98.9 6.4E-09 1.4E-13 92.5 8.4 92 214-320 1-93 (149)
28 TIGR01313 therm_gnt_kin carboh 98.8 2.4E-08 5.1E-13 88.7 10.7 88 215-316 1-88 (163)
29 KOG0780 Signal recognition par 98.8 4E-08 8.6E-13 100.5 12.5 175 115-323 29-208 (483)
30 COG4639 Predicted kinase [Gene 98.8 1.6E-08 3.4E-13 92.4 8.2 93 212-323 2-94 (168)
31 PRK00889 adenylylsulfate kinas 98.7 7.9E-08 1.7E-12 86.6 10.5 95 210-319 2-97 (175)
32 PRK05541 adenylylsulfate kinas 98.7 7.6E-08 1.7E-12 86.7 9.9 88 209-311 4-91 (176)
33 TIGR01359 UMP_CMP_kin_fam UMP- 98.7 1.6E-07 3.4E-12 84.6 10.5 92 214-320 1-98 (183)
34 PRK05506 bifunctional sulfate 98.7 7.9E-08 1.7E-12 103.9 10.0 100 209-322 457-556 (632)
35 PRK03846 adenylylsulfate kinas 98.6 1.4E-07 3E-12 87.2 9.8 99 209-322 21-120 (198)
36 PRK12723 flagellar biosynthesi 98.6 6.5E-07 1.4E-11 92.2 15.3 113 114-258 107-222 (388)
37 PRK14723 flhF flagellar biosyn 98.6 1.1E-06 2.3E-11 97.1 16.5 139 79-255 89-228 (767)
38 PRK05537 bifunctional sulfate 98.6 2.5E-07 5.5E-12 99.2 10.9 101 209-322 389-489 (568)
39 PLN02200 adenylate kinase fami 98.6 6.7E-07 1.5E-11 85.7 12.2 44 203-253 34-77 (234)
40 COG0529 CysC Adenylylsulfate k 98.6 3.2E-07 6.9E-12 85.6 9.4 93 209-316 20-113 (197)
41 PRK06995 flhF flagellar biosyn 98.6 1.2E-06 2.6E-11 92.5 14.7 133 83-255 166-299 (484)
42 PRK14532 adenylate kinase; Pro 98.5 2.4E-07 5.1E-12 84.3 8.2 93 214-321 2-101 (188)
43 PRK14527 adenylate kinase; Pro 98.5 7.3E-07 1.6E-11 81.8 11.5 99 209-321 3-106 (191)
44 KOG3354 Gluconate kinase [Carb 98.5 6.2E-07 1.3E-11 82.3 9.4 95 209-318 9-104 (191)
45 PRK04195 replication factor C 98.5 4.6E-07 1E-11 95.0 8.6 79 159-261 5-83 (482)
46 PRK13948 shikimate kinase; Pro 98.4 7.1E-07 1.5E-11 82.8 8.3 39 209-254 7-45 (182)
47 KOG0781 Signal recognition par 98.4 4.1E-06 8.8E-11 87.8 14.5 108 209-322 375-490 (587)
48 COG4088 Predicted nucleotide k 98.4 7.7E-07 1.7E-11 85.1 8.5 96 214-323 3-99 (261)
49 PF00448 SRP54: SRP54-type pro 98.4 1.2E-06 2.7E-11 81.9 9.7 99 212-322 1-107 (196)
50 TIGR01360 aden_kin_iso1 adenyl 98.4 1.8E-06 3.9E-11 77.5 10.1 32 214-252 5-36 (188)
51 PRK14531 adenylate kinase; Pro 98.4 1.3E-06 2.8E-11 79.9 9.1 93 213-321 3-102 (183)
52 PF13207 AAA_17: AAA domain; P 98.4 2E-07 4.3E-12 78.2 3.4 33 214-253 1-33 (121)
53 PF08433 KTI12: Chromatin asso 98.4 7.7E-07 1.7E-11 87.4 7.7 94 214-323 3-96 (270)
54 PRK12726 flagellar biosynthesi 98.4 8.1E-06 1.8E-10 84.3 15.1 103 210-322 204-309 (407)
55 PRK00131 aroK shikimate kinase 98.4 1.9E-06 4.2E-11 75.9 9.1 38 210-254 2-39 (175)
56 PF01591 6PF2K: 6-phosphofruct 98.3 3.9E-06 8.4E-11 80.5 11.3 106 209-322 9-120 (222)
57 COG4185 Uncharacterized protei 98.3 5.5E-07 1.2E-11 82.9 5.0 87 211-316 1-87 (187)
58 cd01428 ADK Adenylate kinase ( 98.3 7.2E-06 1.6E-10 74.1 12.2 91 215-319 2-98 (194)
59 TIGR01351 adk adenylate kinase 98.3 2E-06 4.3E-11 80.1 8.8 90 215-319 2-99 (210)
60 PRK11545 gntK gluconate kinase 98.3 6.6E-06 1.4E-10 74.3 11.8 86 218-317 1-86 (163)
61 COG3265 GntK Gluconate kinase 98.3 2.4E-06 5.3E-11 77.7 8.2 89 218-320 1-89 (161)
62 PRK01184 hypothetical protein; 98.3 8.4E-06 1.8E-10 73.9 11.6 34 213-254 2-36 (184)
63 PRK12724 flagellar biosynthesi 98.3 1.2E-05 2.5E-10 83.9 13.9 48 210-258 221-268 (432)
64 PRK11889 flhF flagellar biosyn 98.3 1.6E-05 3.4E-10 82.6 14.7 96 138-255 186-282 (436)
65 PRK06696 uridine kinase; Valid 98.3 2.2E-06 4.8E-11 80.7 7.8 51 209-261 19-69 (223)
66 PRK00279 adk adenylate kinase; 98.2 6.5E-06 1.4E-10 77.0 10.2 33 214-253 2-34 (215)
67 PRK13946 shikimate kinase; Pro 98.2 6.2E-06 1.3E-10 75.5 9.8 36 211-253 9-44 (184)
68 PRK06217 hypothetical protein; 98.2 2.1E-06 4.6E-11 78.3 6.6 35 213-254 2-36 (183)
69 TIGR02173 cyt_kin_arch cytidyl 98.2 2.5E-06 5.4E-11 75.4 6.8 33 214-253 2-34 (171)
70 PRK07261 topology modulation p 98.2 2.1E-06 4.5E-11 78.2 6.2 34 214-254 2-35 (171)
71 cd00464 SK Shikimate kinase (S 98.2 5.9E-06 1.3E-10 71.8 8.9 33 215-254 2-34 (154)
72 COG0194 Gmk Guanylate kinase [ 98.2 6.9E-07 1.5E-11 83.7 2.8 88 211-309 3-104 (191)
73 TIGR03499 FlhF flagellar biosy 98.2 2E-05 4.4E-10 77.5 12.9 46 210-255 192-237 (282)
74 PHA02544 44 clamp loader, smal 98.2 3.7E-06 8E-11 82.3 7.4 67 159-252 12-78 (316)
75 PRK04182 cytidylate kinase; Pr 98.2 3.5E-06 7.6E-11 74.9 6.6 33 214-253 2-34 (180)
76 cd03115 SRP The signal recogni 98.2 4.4E-06 9.5E-11 75.0 7.2 100 214-320 2-104 (173)
77 PRK14955 DNA polymerase III su 98.2 7.5E-06 1.6E-10 84.0 9.7 61 156-238 4-64 (397)
78 cd02020 CMPK Cytidine monophos 98.2 5.5E-06 1.2E-10 71.2 7.3 34 214-254 1-34 (147)
79 PLN02674 adenylate kinase 98.2 7.3E-06 1.6E-10 79.6 8.8 96 210-320 29-131 (244)
80 TIGR03575 selen_PSTK_euk L-ser 98.2 1.6E-05 3.4E-10 80.8 11.5 109 214-323 1-152 (340)
81 PRK14530 adenylate kinase; Pro 98.2 1.4E-05 3E-10 74.7 10.4 89 214-314 5-98 (215)
82 PRK04040 adenylate kinase; Pro 98.2 7.6E-06 1.6E-10 76.0 8.4 38 212-254 2-39 (188)
83 PLN03025 replication factor C 98.2 5.5E-06 1.2E-10 82.2 7.9 80 159-261 4-83 (319)
84 PTZ00322 6-phosphofructo-2-kin 98.1 3.4E-05 7.4E-10 84.3 14.4 104 211-322 214-318 (664)
85 COG0563 Adk Adenylate kinase a 98.1 8.5E-06 1.8E-10 75.4 8.2 34 214-254 2-35 (178)
86 PRK14958 DNA polymerase III su 98.1 8.8E-06 1.9E-10 86.5 9.4 60 157-238 5-64 (509)
87 PF05496 RuvB_N: Holliday junc 98.1 2E-05 4.3E-10 76.1 10.9 77 157-256 13-89 (233)
88 PRK14961 DNA polymerase III su 98.1 4.3E-06 9.4E-11 84.7 6.7 60 157-238 5-64 (363)
89 PRK08118 topology modulation p 98.1 5.1E-06 1.1E-10 75.5 6.2 34 214-254 3-36 (167)
90 PRK14960 DNA polymerase III su 98.1 1E-05 2.2E-10 88.4 9.3 59 158-238 5-63 (702)
91 PRK09825 idnK D-gluconate kina 98.1 3.1E-05 6.7E-10 71.1 11.1 45 212-263 3-47 (176)
92 PRK13947 shikimate kinase; Pro 98.1 1.6E-05 3.5E-10 70.8 8.9 33 215-254 4-36 (171)
93 PTZ00088 adenylate kinase 1; P 98.1 1.6E-05 3.5E-10 76.3 9.4 37 211-254 5-41 (229)
94 PRK05703 flhF flagellar biosyn 98.1 9.2E-05 2E-09 77.1 15.1 136 79-255 129-264 (424)
95 PRK14963 DNA polymerase III su 98.1 1.5E-05 3.2E-10 84.7 9.2 59 158-238 4-62 (504)
96 COG1102 Cmk Cytidylate kinase 98.0 9.3E-06 2E-10 75.0 6.4 34 214-254 2-36 (179)
97 PRK14949 DNA polymerase III su 98.0 1.6E-05 3.5E-10 89.1 9.5 59 158-238 6-64 (944)
98 PRK03839 putative kinase; Prov 98.0 4.3E-06 9.3E-11 75.6 3.9 34 214-254 2-35 (180)
99 KOG1969 DNA replication checkp 98.0 1.1E-05 2.4E-10 88.1 7.6 93 157-254 260-363 (877)
100 PRK14964 DNA polymerase III su 98.0 1.8E-05 3.9E-10 83.9 8.9 58 159-238 4-61 (491)
101 PRK09270 nucleoside triphospha 98.0 2.9E-05 6.4E-10 73.5 9.3 70 171-257 7-77 (229)
102 PRK07003 DNA polymerase III su 98.0 2.2E-05 4.7E-10 86.9 9.4 60 157-238 5-64 (830)
103 PRK00625 shikimate kinase; Pro 98.0 2.5E-05 5.4E-10 71.8 8.4 34 214-254 2-35 (173)
104 TIGR00041 DTMP_kinase thymidyl 98.0 7.6E-05 1.7E-09 67.9 11.4 92 212-306 3-97 (195)
105 PRK14737 gmk guanylate kinase; 98.0 2.4E-06 5.2E-11 79.2 1.3 85 211-306 3-102 (186)
106 COG0703 AroK Shikimate kinase 98.0 2.7E-05 5.9E-10 72.2 8.0 35 214-255 4-38 (172)
107 PRK14952 DNA polymerase III su 97.9 3E-05 6.4E-10 83.8 9.1 58 159-238 4-61 (584)
108 PRK12323 DNA polymerase III su 97.9 3.3E-05 7.2E-10 84.3 9.5 59 158-238 6-64 (700)
109 PRK12402 replication factor C 97.9 1.9E-05 4.1E-10 77.3 7.0 72 159-253 6-77 (337)
110 PRK14956 DNA polymerase III su 97.9 1.6E-05 3.6E-10 83.9 6.9 59 158-238 8-66 (484)
111 PRK14962 DNA polymerase III su 97.9 1.5E-05 3.3E-10 84.0 6.4 58 159-238 5-62 (472)
112 PRK10078 ribose 1,5-bisphospho 97.9 1.8E-05 3.9E-10 72.4 6.1 25 213-237 3-27 (186)
113 PRK14951 DNA polymerase III su 97.9 3.4E-05 7.3E-10 83.9 9.1 60 157-238 5-64 (618)
114 PRK03731 aroL shikimate kinase 97.9 4.4E-05 9.6E-10 68.2 8.3 34 214-254 4-37 (171)
115 PRK00091 miaA tRNA delta(2)-is 97.9 3.9E-05 8.4E-10 76.8 8.6 81 211-306 3-101 (307)
116 PRK14738 gmk guanylate kinase; 97.9 5.2E-06 1.1E-10 77.7 2.2 27 209-235 10-36 (206)
117 TIGR02397 dnaX_nterm DNA polym 97.9 5.2E-05 1.1E-09 75.1 9.4 59 158-238 4-62 (355)
118 PRK08356 hypothetical protein; 97.9 0.00012 2.5E-09 67.7 11.0 33 212-252 5-37 (195)
119 PRK02496 adk adenylate kinase; 97.9 7.6E-05 1.7E-09 67.7 9.6 33 214-253 3-35 (184)
120 PRK14969 DNA polymerase III su 97.9 2.1E-05 4.6E-10 83.8 6.9 59 158-238 6-64 (527)
121 PRK05057 aroK shikimate kinase 97.9 0.00013 2.9E-09 66.5 11.1 36 212-254 4-39 (172)
122 PRK06547 hypothetical protein; 97.9 1.4E-05 3.1E-10 73.3 4.6 39 209-254 12-50 (172)
123 PRK14526 adenylate kinase; Pro 97.9 8.5E-05 1.9E-09 70.4 9.9 32 215-253 3-34 (211)
124 PF00406 ADK: Adenylate kinase 97.9 0.00017 3.6E-09 63.6 11.1 29 217-252 1-29 (151)
125 PRK05563 DNA polymerase III su 97.9 5.3E-05 1.1E-09 81.4 9.3 59 158-238 6-64 (559)
126 PRK14965 DNA polymerase III su 97.9 5.8E-05 1.3E-09 81.3 9.5 59 158-238 6-64 (576)
127 PRK14957 DNA polymerase III su 97.8 2.8E-05 6E-10 83.5 6.8 59 158-238 6-64 (546)
128 cd01672 TMPK Thymidine monopho 97.8 0.00016 3.5E-09 64.8 10.8 33 214-248 2-34 (200)
129 PRK07994 DNA polymerase III su 97.8 5.5E-05 1.2E-09 82.6 9.1 59 158-238 6-64 (647)
130 PRK00698 tmk thymidylate kinas 97.8 0.00016 3.6E-09 65.8 10.9 89 212-304 3-94 (205)
131 PRK05480 uridine/cytidine kina 97.8 2.8E-05 6E-10 72.1 5.8 41 210-254 4-44 (209)
132 PRK07667 uridine kinase; Provi 97.8 2.5E-05 5.5E-10 72.2 5.5 43 210-254 15-57 (193)
133 PRK14954 DNA polymerase III su 97.8 6.9E-05 1.5E-09 81.6 9.5 60 157-238 5-64 (620)
134 PRK00080 ruvB Holliday junctio 97.8 6.8E-05 1.5E-09 74.6 8.8 72 159-253 16-87 (328)
135 PRK08233 hypothetical protein; 97.8 2.4E-05 5.2E-10 69.8 4.7 27 211-237 2-28 (182)
136 PRK06305 DNA polymerase III su 97.8 9.7E-05 2.1E-09 77.4 9.9 61 156-238 5-65 (451)
137 PRK08691 DNA polymerase III su 97.8 3.6E-05 7.9E-10 84.4 6.9 60 157-238 5-64 (709)
138 PRK06761 hypothetical protein; 97.8 0.00017 3.7E-09 71.6 11.0 98 212-318 3-101 (282)
139 PRK14950 DNA polymerase III su 97.8 9.6E-05 2.1E-09 79.7 9.9 59 158-238 6-64 (585)
140 PRK13973 thymidylate kinase; P 97.8 0.00022 4.7E-09 67.0 11.0 93 212-307 3-98 (213)
141 PRK06645 DNA polymerase III su 97.8 3.4E-05 7.4E-10 82.1 6.2 58 159-238 12-69 (507)
142 PRK00300 gmk guanylate kinase; 97.8 1.1E-05 2.3E-10 74.1 2.0 27 210-236 3-29 (205)
143 PRK13949 shikimate kinase; Pro 97.8 0.00016 3.4E-09 66.0 9.5 34 214-254 3-36 (169)
144 PRK05439 pantothenate kinase; 97.8 5E-05 1.1E-09 76.3 6.8 47 209-255 83-129 (311)
145 PRK00440 rfc replication facto 97.8 9E-05 1.9E-09 71.9 8.4 55 159-236 8-62 (319)
146 PRK14528 adenylate kinase; Pro 97.7 8.6E-05 1.9E-09 68.4 7.6 33 214-253 3-35 (186)
147 PRK06647 DNA polymerase III su 97.7 0.00011 2.4E-09 79.1 9.4 59 158-238 6-64 (563)
148 TIGR03263 guanyl_kin guanylate 97.7 2.2E-05 4.8E-10 70.5 3.5 24 213-236 2-25 (180)
149 PRK14959 DNA polymerase III su 97.7 0.00011 2.4E-09 80.0 9.4 59 158-238 6-64 (624)
150 KOG3079 Uridylate kinase/adeny 97.7 0.00015 3.2E-09 68.2 9.0 91 209-316 5-105 (195)
151 PLN02459 probable adenylate ki 97.7 0.00015 3.2E-09 71.4 9.3 36 211-253 28-63 (261)
152 cd02028 UMPK_like Uridine mono 97.7 2.8E-05 6.2E-10 71.3 3.8 40 214-255 1-40 (179)
153 PRK15453 phosphoribulokinase; 97.7 4.4E-05 9.6E-10 75.9 5.5 45 210-256 3-47 (290)
154 TIGR02322 phosphon_PhnN phosph 97.7 7.3E-05 1.6E-09 67.3 6.4 26 213-238 2-27 (179)
155 PRK14970 DNA polymerase III su 97.7 6.5E-05 1.4E-09 75.6 6.7 60 157-238 6-65 (367)
156 PRK14529 adenylate kinase; Pro 97.7 0.00018 4E-09 69.0 9.3 90 215-320 3-99 (223)
157 PRK07764 DNA polymerase III su 97.7 0.00013 2.7E-09 81.9 9.4 59 158-238 5-63 (824)
158 PRK05896 DNA polymerase III su 97.7 5.8E-05 1.3E-09 81.8 6.6 60 157-238 5-64 (605)
159 PLN02165 adenylate isopentenyl 97.7 0.0001 2.2E-09 74.7 7.4 37 210-253 41-77 (334)
160 smart00382 AAA ATPases associa 97.7 6.1E-05 1.3E-09 61.4 4.8 42 212-255 2-43 (148)
161 TIGR00152 dephospho-CoA kinase 97.7 0.00011 2.3E-09 67.4 6.7 34 214-254 1-34 (188)
162 PRK09111 DNA polymerase III su 97.6 8.5E-05 1.9E-09 80.5 6.7 59 158-238 14-72 (598)
163 PRK08451 DNA polymerase III su 97.6 0.0002 4.3E-09 76.8 9.2 59 158-238 4-62 (535)
164 cd02022 DPCK Dephospho-coenzym 97.6 3.9E-05 8.4E-10 70.0 3.3 33 214-254 1-33 (179)
165 PRK14730 coaE dephospho-CoA ki 97.6 4.8E-05 1E-09 70.9 3.9 34 214-254 3-36 (195)
166 PRK07133 DNA polymerase III su 97.6 9.6E-05 2.1E-09 81.5 6.6 59 158-238 8-66 (725)
167 PF00004 AAA: ATPase family as 97.6 6.2E-05 1.3E-09 63.0 4.0 34 215-253 1-34 (132)
168 cd02024 NRK1 Nicotinamide ribo 97.6 5.5E-05 1.2E-09 70.7 4.0 36 214-255 1-36 (187)
169 PF13238 AAA_18: AAA domain; P 97.6 4.7E-05 1E-09 63.5 3.2 22 215-236 1-22 (129)
170 PRK14722 flhF flagellar biosyn 97.6 0.00073 1.6E-08 69.6 12.2 46 210-256 135-181 (374)
171 PRK08154 anaerobic benzoate ca 97.6 0.00065 1.4E-08 67.7 11.5 37 210-253 131-167 (309)
172 PF03215 Rad17: Rad17 cell cyc 97.6 0.00011 2.3E-09 78.6 6.3 62 159-238 10-71 (519)
173 smart00072 GuKc Guanylate kina 97.6 5.6E-05 1.2E-09 69.2 3.6 25 212-236 2-26 (184)
174 PRK09435 membrane ATPase/prote 97.6 0.00017 3.6E-09 73.1 7.4 51 200-252 44-94 (332)
175 PRK14953 DNA polymerase III su 97.6 0.00011 2.5E-09 77.7 6.4 59 158-238 6-64 (486)
176 PLN02924 thymidylate kinase 97.6 0.00078 1.7E-08 64.3 11.4 95 209-308 13-110 (220)
177 PF00485 PRK: Phosphoribulokin 97.6 0.00011 2.3E-09 67.8 5.3 39 214-254 1-43 (194)
178 PF01121 CoaE: Dephospho-CoA k 97.6 0.00018 3.9E-09 66.7 6.7 34 213-254 1-34 (180)
179 cd02023 UMPK Uridine monophosp 97.5 9.1E-05 2E-09 68.0 4.5 37 214-254 1-37 (198)
180 PRK14721 flhF flagellar biosyn 97.5 0.0014 3E-08 68.5 13.7 46 210-255 189-234 (420)
181 PRK00081 coaE dephospho-CoA ki 97.5 8.9E-05 1.9E-09 68.7 4.3 35 212-254 2-36 (194)
182 PRK13342 recombination factor 97.5 0.00015 3.2E-09 74.8 6.3 65 159-251 3-70 (413)
183 TIGR02903 spore_lon_C ATP-depe 97.5 0.00039 8.4E-09 75.6 9.6 123 84-254 93-222 (615)
184 TIGR00235 udk uridine kinase. 97.5 0.00013 2.7E-09 68.0 5.1 42 209-254 3-44 (207)
185 KOG0991 Replication factor C, 97.5 0.00017 3.7E-09 70.6 6.1 85 156-263 15-99 (333)
186 TIGR00750 lao LAO/AO transport 97.5 0.00044 9.5E-09 68.5 9.2 52 201-254 23-74 (300)
187 PRK13975 thymidylate kinase; P 97.5 0.00082 1.8E-08 61.1 10.2 26 212-237 2-27 (196)
188 cd02025 PanK Pantothenate kina 97.5 0.00011 2.3E-09 69.9 4.4 42 214-255 1-42 (220)
189 PLN02840 tRNA dimethylallyltra 97.5 0.00045 9.7E-09 72.1 9.3 45 203-254 12-56 (421)
190 TIGR00554 panK_bact pantothena 97.5 0.00016 3.4E-09 72.1 5.7 47 209-255 59-105 (290)
191 COG0572 Udk Uridine kinase [Nu 97.5 0.00013 2.8E-09 70.0 4.9 42 210-255 6-47 (218)
192 PRK13808 adenylate kinase; Pro 97.5 0.00077 1.7E-08 68.5 10.7 32 215-253 3-34 (333)
193 PRK14971 DNA polymerase III su 97.5 0.00045 9.7E-09 75.2 9.5 58 159-238 8-65 (614)
194 smart00763 AAA_PrkA PrkA AAA d 97.5 0.00018 4E-09 73.6 5.9 55 166-237 48-103 (361)
195 PRK12727 flagellar biosynthesi 97.4 0.0048 1E-07 66.4 16.7 46 210-255 348-393 (559)
196 PRK14733 coaE dephospho-CoA ki 97.4 0.00015 3.1E-09 68.8 4.5 38 210-254 4-41 (204)
197 PRK14731 coaE dephospho-CoA ki 97.4 0.00015 3.4E-09 67.9 4.7 37 210-254 3-39 (208)
198 cd02019 NK Nucleoside/nucleoti 97.4 0.00019 4.1E-09 56.0 4.4 32 214-249 1-32 (69)
199 TIGR01241 FtsH_fam ATP-depende 97.4 0.00041 8.9E-09 73.1 8.2 75 163-253 50-124 (495)
200 cd00071 GMPK Guanosine monopho 97.4 3.7E-05 8E-10 67.7 0.3 23 214-236 1-23 (137)
201 PRK14734 coaE dephospho-CoA ki 97.4 0.00076 1.7E-08 63.1 8.7 33 213-253 2-34 (200)
202 PLN02748 tRNA dimethylallyltra 97.4 0.00041 8.8E-09 73.4 7.6 37 210-253 20-56 (468)
203 PF00625 Guanylate_kin: Guanyl 97.4 2.5E-05 5.3E-10 71.2 -1.3 79 212-306 2-101 (183)
204 TIGR00635 ruvB Holliday juncti 97.4 0.00075 1.6E-08 65.8 8.8 56 165-238 1-56 (305)
205 TIGR00174 miaA tRNA isopenteny 97.4 0.0003 6.6E-09 70.0 6.0 77 214-305 1-95 (287)
206 PTZ00301 uridine kinase; Provi 97.3 0.00023 5E-09 67.5 4.8 41 213-254 4-45 (210)
207 COG1419 FlhF Flagellar GTP-bin 97.3 0.00081 1.8E-08 69.8 8.9 47 210-256 201-247 (407)
208 PF01202 SKI: Shikimate kinase 97.3 0.0012 2.5E-08 59.1 8.9 27 221-254 1-27 (158)
209 PLN02199 shikimate kinase 97.3 0.001 2.2E-08 66.8 9.1 36 212-254 102-137 (303)
210 cd02029 PRK_like Phosphoribulo 97.3 0.00022 4.7E-09 70.7 4.3 40 214-255 1-40 (277)
211 TIGR00017 cmk cytidylate kinas 97.3 0.00026 5.6E-09 67.4 4.3 36 212-254 2-37 (217)
212 PRK13951 bifunctional shikimat 97.2 0.0017 3.7E-08 68.9 10.5 34 214-254 2-35 (488)
213 COG1936 Predicted nucleotide k 97.2 0.0037 8E-08 58.4 11.3 24 214-238 2-25 (180)
214 PF13401 AAA_22: AAA domain; P 97.2 0.00066 1.4E-08 57.2 6.0 54 211-264 3-59 (131)
215 PRK14948 DNA polymerase III su 97.2 0.00045 9.8E-09 75.3 6.1 58 159-238 7-64 (620)
216 PRK06731 flhF flagellar biosyn 97.2 0.0031 6.8E-08 62.2 11.4 42 211-254 74-115 (270)
217 COG0237 CoaE Dephospho-CoA kin 97.2 0.00033 7.1E-09 66.3 4.2 35 212-254 2-36 (201)
218 cd01673 dNK Deoxyribonucleosid 97.2 0.0013 2.9E-08 59.8 8.1 25 214-238 1-25 (193)
219 TIGR01618 phage_P_loop phage n 97.2 0.00048 1E-08 66.1 5.3 35 209-252 9-43 (220)
220 PF13521 AAA_28: AAA domain; P 97.2 0.0016 3.4E-08 58.0 8.2 23 215-238 2-24 (163)
221 PRK14021 bifunctional shikimat 97.2 0.0024 5.2E-08 68.5 11.0 35 213-254 7-41 (542)
222 PF02223 Thymidylate_kin: Thym 97.2 0.0022 4.8E-08 58.2 9.2 86 217-306 1-88 (186)
223 cd00009 AAA The AAA+ (ATPases 97.2 0.00074 1.6E-08 55.8 5.7 42 211-254 18-59 (151)
224 PRK13477 bifunctional pantoate 97.2 0.00035 7.7E-09 74.5 4.6 38 210-254 282-319 (512)
225 KOG3347 Predicted nucleotide k 97.1 0.00074 1.6E-08 62.0 5.6 24 215-238 10-33 (176)
226 PRK14732 coaE dephospho-CoA ki 97.1 0.0019 4.1E-08 60.5 8.5 33 214-254 1-33 (196)
227 PRK07933 thymidylate kinase; V 97.1 0.0031 6.6E-08 59.7 9.9 90 214-307 2-97 (213)
228 TIGR00602 rad24 checkpoint pro 97.1 0.0008 1.7E-08 73.6 6.6 64 157-238 73-136 (637)
229 PRK08903 DnaA regulatory inact 97.1 0.00084 1.8E-08 62.9 5.9 41 212-254 42-82 (227)
230 CHL00176 ftsH cell division pr 97.1 0.0017 3.8E-08 71.0 9.1 75 164-254 179-253 (638)
231 PLN02796 D-glycerate 3-kinase 97.1 0.00095 2.1E-08 68.1 6.6 53 210-264 98-150 (347)
232 cd01120 RecA-like_NTPases RecA 97.1 0.00052 1.1E-08 58.7 4.0 39 214-254 1-39 (165)
233 CHL00181 cbbX CbbX; Provisiona 97.1 0.00082 1.8E-08 66.5 5.9 76 151-236 6-83 (287)
234 PRK05201 hslU ATP-dependent pr 97.1 0.0032 7E-08 66.1 10.4 71 170-255 17-88 (443)
235 PRK00023 cmk cytidylate kinase 97.1 0.00043 9.3E-09 66.0 3.7 35 212-253 4-38 (225)
236 PLN02348 phosphoribulokinase 97.1 0.00075 1.6E-08 69.9 5.6 47 209-255 46-105 (395)
237 COG0324 MiaA tRNA delta(2)-iso 97.1 0.0016 3.5E-08 65.5 7.5 81 211-306 2-101 (308)
238 PF03308 ArgK: ArgK protein; 97.0 0.00041 8.8E-09 68.3 3.1 39 209-249 26-64 (266)
239 PLN03046 D-glycerate 3-kinase; 97.0 0.0013 2.8E-08 69.0 6.9 53 209-263 209-261 (460)
240 TIGR01243 CDC48 AAA family ATP 97.0 0.0017 3.6E-08 71.8 8.1 73 165-252 450-522 (733)
241 PRK07940 DNA polymerase III su 97.0 0.0018 3.8E-08 67.1 7.8 60 166-238 3-62 (394)
242 COG2255 RuvB Holliday junction 97.0 0.0034 7.3E-08 63.0 9.3 73 159-254 17-89 (332)
243 PTZ00454 26S protease regulato 97.0 0.0058 1.3E-07 63.4 11.5 64 164-237 141-204 (398)
244 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0011 2.4E-08 61.4 5.6 42 211-254 37-78 (226)
245 PF08303 tRNA_lig_kinase: tRNA 97.0 0.0031 6.8E-08 58.4 8.2 77 215-323 2-80 (168)
246 TIGR02881 spore_V_K stage V sp 97.0 0.0013 2.8E-08 63.4 6.1 63 166-236 4-66 (261)
247 PRK03992 proteasome-activating 97.0 0.0014 2.9E-08 67.5 6.4 39 210-253 163-201 (389)
248 COG1703 ArgK Putative periplas 97.0 0.00085 1.8E-08 67.4 4.8 51 199-251 38-88 (323)
249 PRK05800 cobU adenosylcobinami 97.0 0.00092 2E-08 61.3 4.6 34 214-252 3-36 (170)
250 PTZ00451 dephospho-CoA kinase; 97.0 0.00068 1.5E-08 65.9 3.9 35 213-254 2-36 (244)
251 COG2812 DnaX DNA polymerase II 97.0 0.00056 1.2E-08 73.1 3.5 59 158-238 6-64 (515)
252 KOG3220 Similar to bacterial d 97.0 0.0052 1.1E-07 58.8 9.6 33 214-254 3-35 (225)
253 KOG0989 Replication factor C, 97.0 0.0014 3.1E-08 66.0 6.1 75 158-255 26-101 (346)
254 PRK13974 thymidylate kinase; P 96.9 0.008 1.7E-07 56.4 10.8 26 212-237 3-28 (212)
255 PRK14729 miaA tRNA delta(2)-is 96.9 0.0024 5.2E-08 64.0 7.7 36 211-254 3-38 (300)
256 cd01394 radB RadB. The archaea 96.9 0.0012 2.7E-08 61.3 5.3 42 210-253 17-58 (218)
257 KOG2134 Polynucleotide kinase 96.9 0.0019 4.2E-08 66.5 7.0 78 210-322 267-344 (422)
258 PRK13976 thymidylate kinase; P 96.9 0.0064 1.4E-07 57.5 10.1 90 214-307 2-95 (209)
259 PRK07429 phosphoribulokinase; 96.9 0.0014 3E-08 66.3 5.8 43 209-255 5-47 (327)
260 PRK13341 recombination factor 96.9 0.0014 3.1E-08 72.6 6.5 60 158-237 18-77 (725)
261 cd01124 KaiC KaiC is a circadi 96.9 0.001 2.2E-08 59.6 4.2 39 214-254 1-39 (187)
262 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0025 5.3E-08 67.8 7.8 38 210-252 257-294 (489)
263 TIGR02237 recomb_radB DNA repa 96.9 0.0014 3.1E-08 60.4 5.3 43 210-254 10-52 (209)
264 PRK13768 GTPase; Provisional 96.9 0.0012 2.6E-08 63.9 4.9 40 212-253 2-41 (253)
265 PRK11860 bifunctional 3-phosph 96.9 0.0025 5.4E-08 69.8 7.8 36 213-255 443-478 (661)
266 PRK07471 DNA polymerase III su 96.9 0.0015 3.3E-08 66.9 5.7 56 161-238 12-67 (365)
267 COG0470 HolB ATPase involved i 96.9 0.0032 7E-08 61.0 7.6 48 210-257 22-88 (325)
268 PF07728 AAA_5: AAA domain (dy 96.8 0.0017 3.6E-08 56.0 4.9 87 215-320 2-89 (139)
269 PLN02422 dephospho-CoA kinase 96.8 0.00099 2.1E-08 64.4 3.7 33 214-254 3-35 (232)
270 TIGR01243 CDC48 AAA family ATP 96.8 0.0035 7.5E-08 69.4 8.4 75 163-252 173-247 (733)
271 COG2805 PilT Tfp pilus assembl 96.8 0.011 2.5E-07 59.7 11.1 126 211-356 124-252 (353)
272 KOG0635 Adenosine 5'-phosphosu 96.8 0.0015 3.3E-08 60.3 4.3 43 210-254 29-71 (207)
273 PLN02772 guanylate kinase 96.8 0.00083 1.8E-08 69.6 2.9 86 211-307 134-235 (398)
274 PHA00729 NTP-binding motif con 96.8 0.0011 2.3E-08 64.1 3.3 26 212-237 17-42 (226)
275 KOG0738 AAA+-type ATPase [Post 96.8 0.0025 5.3E-08 66.2 6.1 61 164-237 208-270 (491)
276 TIGR03015 pepcterm_ATPase puta 96.7 0.0088 1.9E-07 56.9 9.5 26 211-236 42-67 (269)
277 KOG1970 Checkpoint RAD17-RFC c 96.7 0.003 6.5E-08 67.8 6.6 70 153-238 67-136 (634)
278 PLN02318 phosphoribulokinase/u 96.7 0.0016 3.4E-08 70.9 4.6 39 210-254 63-101 (656)
279 PRK05564 DNA polymerase III su 96.7 0.0024 5.1E-08 63.3 5.6 51 166-238 2-52 (313)
280 COG1222 RPT1 ATP-dependent 26S 96.7 0.0079 1.7E-07 61.9 9.3 69 209-304 182-250 (406)
281 PF03029 ATP_bind_1: Conserved 96.7 0.0015 3.2E-08 63.1 4.0 34 217-252 1-34 (238)
282 KOG3062 RNA polymerase II elon 96.7 0.0051 1.1E-07 59.9 7.4 93 214-321 3-97 (281)
283 PRK09361 radB DNA repair and r 96.7 0.0026 5.6E-08 59.6 5.3 42 210-253 21-62 (225)
284 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0017 3.8E-08 57.8 3.9 28 211-238 21-48 (133)
285 TIGR03689 pup_AAA proteasome A 96.7 0.0012 2.6E-08 70.6 3.4 76 152-237 166-241 (512)
286 cd01131 PilT Pilus retraction 96.7 0.0026 5.6E-08 59.2 5.1 23 214-236 3-25 (198)
287 TIGR00390 hslU ATP-dependent p 96.6 0.0051 1.1E-07 64.6 7.6 70 170-254 14-84 (441)
288 cd02026 PRK Phosphoribulokinas 96.6 0.0021 4.5E-08 63.3 4.6 38 214-255 1-38 (273)
289 cd02034 CooC The accessory pro 96.6 0.0025 5.5E-08 55.0 4.4 36 215-252 2-37 (116)
290 COG0464 SpoVK ATPases of the A 96.6 0.008 1.7E-07 63.1 9.0 30 209-238 273-302 (494)
291 TIGR01242 26Sp45 26S proteasom 96.6 0.0031 6.7E-08 63.8 5.7 66 162-237 116-181 (364)
292 PRK03333 coaE dephospho-CoA ki 96.6 0.0018 3.8E-08 66.9 3.9 33 214-254 3-35 (395)
293 PRK08116 hypothetical protein; 96.6 0.018 4E-07 56.4 10.8 40 212-253 114-153 (268)
294 COG2256 MGS1 ATPase related to 96.6 0.0042 9E-08 64.6 6.4 71 157-252 13-83 (436)
295 TIGR02640 gas_vesic_GvpN gas v 96.6 0.0053 1.2E-07 59.6 6.9 34 214-252 23-56 (262)
296 PRK09112 DNA polymerase III su 96.6 0.0032 7E-08 64.2 5.6 56 161-238 16-71 (351)
297 KOG0731 AAA+-type ATPase conta 96.6 0.0029 6.4E-08 70.2 5.5 75 165-255 308-382 (774)
298 COG0283 Cmk Cytidylate kinase 96.6 0.0034 7.5E-08 60.4 5.2 35 213-254 5-39 (222)
299 cd02030 NDUO42 NADH:Ubiquinone 96.6 0.014 3E-07 55.1 9.3 25 214-238 1-25 (219)
300 PLN02842 nucleotide kinase 96.6 0.013 2.9E-07 62.6 10.1 31 216-253 1-31 (505)
301 PRK04296 thymidine kinase; Pro 96.6 0.0027 5.9E-08 58.7 4.4 36 213-250 3-38 (190)
302 PRK09518 bifunctional cytidyla 96.6 0.002 4.4E-08 71.0 4.2 34 214-254 3-36 (712)
303 PF07015 VirC1: VirC1 protein; 96.5 0.011 2.3E-07 57.5 8.6 93 212-311 2-96 (231)
304 PRK11034 clpA ATP-dependent Cl 96.5 0.02 4.4E-07 64.0 11.9 71 169-259 459-530 (758)
305 KOG0733 Nuclear AAA ATPase (VC 96.5 0.013 2.7E-07 64.0 9.8 41 209-254 220-260 (802)
306 COG2019 AdkA Archaeal adenylat 96.5 0.011 2.4E-07 55.3 8.2 25 212-236 4-28 (189)
307 COG0465 HflB ATP-dependent Zn 96.5 0.0032 6.9E-08 68.4 5.4 76 164-255 146-221 (596)
308 PTZ00361 26 proteosome regulat 96.5 0.0045 9.7E-08 65.1 6.3 79 160-253 175-253 (438)
309 CHL00206 ycf2 Ycf2; Provisiona 96.5 0.013 2.8E-07 70.6 10.6 121 125-254 1534-1667(2281)
310 COG1428 Deoxynucleoside kinase 96.5 0.011 2.3E-07 56.9 8.2 27 212-238 4-30 (216)
311 TIGR01650 PD_CobS cobaltochela 96.5 0.0026 5.6E-08 64.6 4.3 34 214-252 66-99 (327)
312 KOG0733 Nuclear AAA ATPase (VC 96.5 0.018 3.9E-07 62.8 10.8 67 210-303 543-609 (802)
313 cd01130 VirB11-like_ATPase Typ 96.5 0.003 6.5E-08 57.9 4.4 90 211-312 24-114 (186)
314 KOG0743 AAA+-type ATPase [Post 96.5 0.0066 1.4E-07 63.8 7.2 86 165-265 198-283 (457)
315 KOG0744 AAA+-type ATPase [Post 96.5 0.017 3.6E-07 59.1 9.8 28 211-238 176-203 (423)
316 cd03114 ArgK-like The function 96.5 0.0027 5.8E-08 56.8 3.6 36 215-252 2-37 (148)
317 COG4615 PvdE ABC-type sideroph 96.5 0.011 2.4E-07 61.9 8.4 27 210-236 347-373 (546)
318 PF13173 AAA_14: AAA domain 96.4 0.0035 7.5E-08 54.0 4.2 39 213-254 3-41 (128)
319 PLN00020 ribulose bisphosphate 96.4 0.0031 6.8E-08 65.3 4.3 41 209-254 145-185 (413)
320 PF13191 AAA_16: AAA ATPase do 96.4 0.0024 5.3E-08 56.5 3.1 43 209-253 21-63 (185)
321 COG4240 Predicted kinase [Gene 96.4 0.0089 1.9E-07 58.5 7.1 55 209-265 47-102 (300)
322 TIGR00101 ureG urease accessor 96.4 0.0065 1.4E-07 56.9 6.1 40 212-254 1-40 (199)
323 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.0034 7.3E-08 49.0 3.5 34 214-249 1-34 (99)
324 PF05729 NACHT: NACHT domain 96.4 0.0028 6.1E-08 54.8 3.3 23 214-236 2-24 (166)
325 TIGR00763 lon ATP-dependent pr 96.4 0.026 5.6E-07 63.1 11.6 36 213-253 348-383 (775)
326 KOG1532 GTPase XAB1, interacts 96.4 0.017 3.7E-07 57.9 9.0 93 209-305 16-123 (366)
327 PRK10463 hydrogenase nickel in 96.4 0.012 2.5E-07 59.0 7.9 42 210-254 102-143 (290)
328 TIGR02655 circ_KaiC circadian 96.4 0.0051 1.1E-07 65.0 5.6 43 210-254 261-303 (484)
329 KOG0739 AAA+-type ATPase [Post 96.4 0.023 5.1E-07 57.6 9.9 115 150-304 111-231 (439)
330 PF13245 AAA_19: Part of AAA d 96.3 0.0034 7.4E-08 50.4 3.3 38 212-249 10-49 (76)
331 COG1120 FepC ABC-type cobalami 96.3 0.0043 9.3E-08 61.1 4.6 52 201-255 17-68 (258)
332 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.0047 1E-07 60.0 4.8 41 210-252 34-74 (259)
333 PRK12269 bifunctional cytidyla 96.3 0.0031 6.8E-08 71.2 4.0 35 213-254 35-69 (863)
334 TIGR00176 mobB molybdopterin-g 96.3 0.0041 8.9E-08 56.2 4.0 36 214-251 1-36 (155)
335 TIGR00073 hypB hydrogenase acc 96.3 0.0081 1.7E-07 56.0 6.0 47 209-258 19-65 (207)
336 PF02367 UPF0079: Uncharacteri 96.3 0.0044 9.6E-08 54.5 4.0 29 210-238 13-41 (123)
337 TIGR02928 orc1/cdc6 family rep 96.3 0.012 2.6E-07 58.6 7.6 46 210-255 38-87 (365)
338 PRK06851 hypothetical protein; 96.3 0.0067 1.4E-07 62.5 5.9 26 211-236 213-238 (367)
339 cd00984 DnaB_C DnaB helicase C 96.3 0.0052 1.1E-07 57.7 4.8 43 210-253 11-53 (242)
340 COG0125 Tmk Thymidylate kinase 96.3 0.043 9.3E-07 52.3 10.9 94 211-307 2-97 (208)
341 KOG0730 AAA+-type ATPase [Post 96.3 0.011 2.4E-07 64.6 7.7 67 165-249 431-500 (693)
342 KOG0734 AAA+-type ATPase conta 96.3 0.015 3.3E-07 62.6 8.5 177 164-397 300-486 (752)
343 cd01129 PulE-GspE PulE/GspE Th 96.3 0.0063 1.4E-07 59.5 5.3 91 213-321 81-172 (264)
344 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0058 1.3E-07 58.2 5.0 43 210-254 19-61 (237)
345 cd02037 MRP-like MRP (Multiple 96.3 0.013 2.7E-07 52.6 6.9 39 214-254 2-40 (169)
346 TIGR02902 spore_lonB ATP-depen 96.2 0.0068 1.5E-07 65.0 5.7 60 153-235 50-109 (531)
347 PRK05642 DNA replication initi 96.2 0.017 3.7E-07 55.2 7.9 41 213-255 46-86 (234)
348 COG0396 sufC Cysteine desulfur 96.2 0.007 1.5E-07 59.0 5.1 54 209-263 27-80 (251)
349 KOG0737 AAA+-type ATPase [Post 96.2 0.01 2.2E-07 61.1 6.4 59 166-237 90-152 (386)
350 PF06745 KaiC: KaiC; InterPro 96.2 0.0039 8.4E-08 58.4 3.2 43 210-254 17-60 (226)
351 PRK13886 conjugal transfer pro 96.2 0.025 5.5E-07 55.1 8.9 97 212-316 3-99 (241)
352 COG0378 HypB Ni2+-binding GTPa 96.2 0.0076 1.6E-07 57.3 5.1 47 209-258 9-56 (202)
353 PRK12608 transcription termina 96.2 0.021 4.5E-07 59.2 8.6 88 211-303 132-224 (380)
354 PRK08099 bifunctional DNA-bind 96.2 0.025 5.3E-07 58.8 9.2 29 210-238 217-245 (399)
355 PF03266 NTPase_1: NTPase; In 96.2 0.004 8.8E-08 57.0 3.1 22 215-236 2-23 (168)
356 PF02492 cobW: CobW/HypB/UreG, 96.1 0.0074 1.6E-07 55.1 4.9 37 214-254 2-38 (178)
357 PF13086 AAA_11: AAA domain; P 96.1 0.0051 1.1E-07 55.8 3.7 26 211-236 16-41 (236)
358 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.0062 1.3E-07 56.5 4.3 42 209-253 27-68 (218)
359 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.0078 1.7E-07 56.4 5.1 43 210-254 18-60 (229)
360 cd03225 ABC_cobalt_CbiO_domain 96.1 0.007 1.5E-07 55.9 4.6 43 209-254 24-66 (211)
361 PF07724 AAA_2: AAA domain (Cd 96.1 0.0086 1.9E-07 55.0 5.1 42 213-255 4-45 (171)
362 PF13555 AAA_29: P-loop contai 96.1 0.0052 1.1E-07 48.1 3.1 24 213-236 24-47 (62)
363 PRK08533 flagellar accessory p 96.1 0.0082 1.8E-07 57.4 5.1 43 210-254 22-64 (230)
364 TIGR02639 ClpA ATP-dependent C 96.1 0.035 7.6E-07 61.6 10.7 46 211-261 482-528 (731)
365 cd00820 PEPCK_HprK Phosphoenol 96.1 0.0074 1.6E-07 52.0 4.2 36 210-254 13-48 (107)
366 TIGR02880 cbbX_cfxQ probable R 96.1 0.011 2.4E-07 58.3 6.1 75 168-253 22-101 (284)
367 PF00005 ABC_tran: ABC transpo 96.1 0.0036 7.8E-08 53.5 2.3 43 210-255 9-51 (137)
368 PRK09087 hypothetical protein; 96.1 0.011 2.5E-07 56.4 5.9 83 214-311 46-130 (226)
369 PRK06067 flagellar accessory p 96.1 0.0083 1.8E-07 56.7 4.9 42 210-253 23-64 (234)
370 TIGR01166 cbiO cobalt transpor 96.1 0.0073 1.6E-07 55.0 4.3 42 209-253 15-56 (190)
371 TIGR02673 FtsE cell division A 96.1 0.0074 1.6E-07 55.8 4.4 43 209-254 25-67 (214)
372 PF02881 SRP54_N: SRP54-type p 96.0 0.007 1.5E-07 47.7 3.6 57 85-168 1-57 (75)
373 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0072 1.6E-07 55.8 4.3 42 209-253 23-64 (205)
374 cd03301 ABC_MalK_N The N-termi 96.0 0.0076 1.7E-07 55.7 4.5 41 209-252 23-63 (213)
375 cd01128 rho_factor Transcripti 96.0 0.042 9.2E-07 53.6 9.8 27 211-237 15-41 (249)
376 cd00544 CobU Adenosylcobinamid 96.0 0.0074 1.6E-07 55.4 4.3 34 214-252 1-34 (169)
377 PTZ00202 tuzin; Provisional 96.0 0.033 7.1E-07 59.3 9.5 90 210-311 284-373 (550)
378 TIGR02315 ABC_phnC phosphonate 96.0 0.0074 1.6E-07 56.9 4.4 42 209-253 25-66 (243)
379 PF00931 NB-ARC: NB-ARC domain 96.0 0.017 3.7E-07 55.2 7.0 42 210-251 17-58 (287)
380 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.011 2.4E-07 55.3 5.4 43 210-252 17-63 (235)
381 cd03258 ABC_MetN_methionine_tr 96.0 0.008 1.7E-07 56.4 4.5 48 203-253 22-69 (233)
382 PRK05416 glmZ(sRNA)-inactivati 96.0 0.0082 1.8E-07 59.8 4.8 25 210-234 4-28 (288)
383 cd03260 ABC_PstB_phosphate_tra 96.0 0.0085 1.8E-07 56.0 4.6 43 209-254 23-70 (227)
384 TIGR03864 PQQ_ABC_ATP ABC tran 96.0 0.0081 1.7E-07 56.7 4.4 42 209-253 24-65 (236)
385 PRK13541 cytochrome c biogenes 96.0 0.0099 2.1E-07 54.6 4.9 42 209-253 23-64 (195)
386 cd03262 ABC_HisP_GlnQ_permease 96.0 0.0087 1.9E-07 55.2 4.5 42 209-253 23-64 (213)
387 PF05673 DUF815: Protein of un 96.0 0.02 4.4E-07 56.1 7.2 97 210-311 50-152 (249)
388 COG1618 Predicted nucleotide k 96.0 0.0069 1.5E-07 56.3 3.7 27 210-236 3-29 (179)
389 COG1126 GlnQ ABC-type polar am 96.0 0.0091 2E-07 57.9 4.7 46 205-253 21-66 (240)
390 TIGR01420 pilT_fam pilus retra 96.0 0.022 4.8E-07 57.6 7.7 92 212-320 122-217 (343)
391 cd03263 ABC_subfamily_A The AB 96.0 0.0091 2E-07 55.5 4.6 42 209-253 25-66 (220)
392 PRK05973 replicative DNA helic 96.0 0.0087 1.9E-07 58.1 4.6 42 210-253 62-103 (237)
393 cd03256 ABC_PhnC_transporter A 96.0 0.0089 1.9E-07 56.2 4.5 42 209-253 24-65 (241)
394 cd03296 ABC_CysA_sulfate_impor 96.0 0.0085 1.8E-07 56.7 4.4 32 205-236 21-52 (239)
395 PRK05342 clpX ATP-dependent pr 95.9 0.0063 1.4E-07 63.4 3.8 37 213-254 109-145 (412)
396 cd03295 ABC_OpuCA_Osmoprotecti 95.9 0.0095 2.1E-07 56.5 4.6 42 209-253 24-65 (242)
397 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0086 1.9E-07 56.3 4.3 43 209-254 23-65 (236)
398 PF00910 RNA_helicase: RNA hel 95.9 0.0053 1.2E-07 51.6 2.6 23 215-237 1-23 (107)
399 cd03224 ABC_TM1139_LivF_branch 95.9 0.01 2.2E-07 55.1 4.8 47 204-253 18-64 (222)
400 cd03269 ABC_putative_ATPase Th 95.9 0.0067 1.5E-07 56.1 3.5 41 209-252 23-63 (210)
401 cd03265 ABC_DrrA DrrA is the A 95.9 0.0095 2.1E-07 55.6 4.5 42 209-253 23-64 (220)
402 cd03261 ABC_Org_Solvent_Resist 95.9 0.0089 1.9E-07 56.3 4.4 42 209-253 23-64 (235)
403 cd01918 HprK_C HprK/P, the bif 95.9 0.0092 2E-07 54.2 4.2 25 211-235 13-37 (149)
404 KOG1384 tRNA delta(2)-isopente 95.9 0.018 4E-07 58.5 6.8 84 211-309 6-108 (348)
405 COG1072 CoaA Panthothenate kin 95.9 0.017 3.6E-07 57.6 6.3 47 209-255 79-125 (283)
406 TIGR02211 LolD_lipo_ex lipopro 95.9 0.0099 2.1E-07 55.3 4.6 48 203-253 22-69 (221)
407 COG0467 RAD55 RecA-superfamily 95.9 0.011 2.4E-07 56.9 5.0 43 210-254 21-63 (260)
408 PRK10865 protein disaggregatio 95.9 0.027 5.9E-07 63.7 8.8 78 162-256 562-640 (857)
409 PRK10584 putative ABC transpor 95.9 0.0098 2.1E-07 55.7 4.5 48 203-253 27-74 (228)
410 PRK14250 phosphate ABC transpo 95.9 0.0095 2.1E-07 56.6 4.4 41 209-252 26-66 (241)
411 PRK10751 molybdopterin-guanine 95.9 0.012 2.7E-07 54.6 5.0 26 211-236 5-30 (173)
412 TIGR03410 urea_trans_UrtE urea 95.9 0.01 2.2E-07 55.6 4.5 42 209-253 23-64 (230)
413 COG1855 ATPase (PilT family) [ 95.9 0.0056 1.2E-07 64.7 3.0 25 212-236 263-287 (604)
414 PRK08084 DNA replication initi 95.9 0.008 1.7E-07 57.4 3.9 39 214-254 47-85 (235)
415 cd03268 ABC_BcrA_bacitracin_re 95.9 0.012 2.5E-07 54.4 4.8 41 210-253 24-64 (208)
416 PRK00411 cdc6 cell division co 95.9 0.035 7.5E-07 56.1 8.6 45 211-255 54-98 (394)
417 cd03218 ABC_YhbG The ABC trans 95.9 0.011 2.3E-07 55.5 4.6 42 209-253 23-64 (232)
418 cd03247 ABCC_cytochrome_bd The 95.9 0.012 2.6E-07 53.3 4.7 41 209-252 25-65 (178)
419 PRK06893 DNA replication initi 95.8 0.0092 2E-07 56.8 4.2 36 214-251 41-76 (229)
420 TIGR03346 chaperone_ClpB ATP-d 95.8 0.035 7.6E-07 62.7 9.4 75 168-258 565-639 (852)
421 PRK13538 cytochrome c biogenes 95.8 0.011 2.4E-07 54.6 4.6 43 209-254 24-66 (204)
422 cd03254 ABCC_Glucan_exporter_l 95.8 0.01 2.2E-07 55.5 4.4 41 209-252 26-66 (229)
423 COG4619 ABC-type uncharacteriz 95.8 0.014 3E-07 55.1 5.2 53 199-254 16-68 (223)
424 PF03205 MobB: Molybdopterin g 95.8 0.01 2.2E-07 52.8 4.1 36 214-251 2-38 (140)
425 cd03257 ABC_NikE_OppD_transpor 95.8 0.011 2.3E-07 55.1 4.4 47 204-253 23-69 (228)
426 PF08477 Miro: Miro-like prote 95.8 0.0079 1.7E-07 49.8 3.2 22 215-236 2-23 (119)
427 cd03292 ABC_FtsE_transporter F 95.8 0.0076 1.7E-07 55.6 3.4 42 209-253 24-65 (214)
428 PRK04328 hypothetical protein; 95.8 0.012 2.6E-07 56.8 4.9 43 210-254 21-63 (249)
429 PHA02244 ATPase-like protein 95.8 0.024 5.1E-07 58.8 7.2 30 215-249 122-151 (383)
430 PRK11264 putative amino-acid A 95.8 0.011 2.3E-07 56.2 4.5 41 209-252 26-66 (250)
431 PF13479 AAA_24: AAA domain 95.8 0.0084 1.8E-07 56.4 3.7 33 210-252 1-33 (213)
432 cd03259 ABC_Carb_Solutes_like 95.8 0.0081 1.8E-07 55.6 3.5 42 209-253 23-64 (213)
433 cd03251 ABCC_MsbA MsbA is an e 95.8 0.011 2.4E-07 55.4 4.4 42 209-253 25-66 (234)
434 COG1223 Predicted ATPase (AAA+ 95.8 0.087 1.9E-06 52.8 10.7 63 160-236 113-175 (368)
435 PRK10247 putative ABC transpor 95.8 0.012 2.6E-07 55.3 4.7 42 209-253 30-71 (225)
436 cd03215 ABC_Carb_Monos_II This 95.8 0.012 2.6E-07 53.6 4.5 43 209-254 23-65 (182)
437 cd01393 recA_like RecA is a b 95.8 0.014 3E-07 54.3 5.0 43 210-252 17-63 (226)
438 cd03252 ABCC_Hemolysin The ABC 95.8 0.012 2.5E-07 55.5 4.5 41 209-252 25-65 (237)
439 PRK09493 glnQ glutamine ABC tr 95.8 0.011 2.4E-07 55.8 4.4 42 209-253 24-65 (240)
440 TIGR00960 3a0501s02 Type II (G 95.8 0.0082 1.8E-07 55.7 3.4 42 209-253 26-67 (216)
441 cd03234 ABCG_White The White s 95.8 0.012 2.7E-07 55.1 4.6 45 209-253 30-74 (226)
442 PRK10771 thiQ thiamine transpo 95.7 0.012 2.7E-07 55.3 4.6 42 209-253 22-63 (232)
443 TIGR03771 anch_rpt_ABC anchore 95.7 0.013 2.9E-07 55.0 4.8 39 210-251 4-42 (223)
444 cd03264 ABC_drug_resistance_li 95.7 0.013 2.9E-07 54.1 4.7 40 210-253 24-63 (211)
445 COG3911 Predicted ATPase [Gene 95.7 0.009 1.9E-07 55.1 3.4 25 212-236 9-33 (183)
446 PF00437 T2SE: Type II/IV secr 95.7 0.012 2.6E-07 56.7 4.5 93 211-321 126-219 (270)
447 TIGR01189 ccmA heme ABC export 95.7 0.014 3E-07 53.7 4.7 43 209-254 23-65 (198)
448 cd03293 ABC_NrtD_SsuB_transpor 95.7 0.0084 1.8E-07 55.9 3.3 39 209-250 27-65 (220)
449 PRK10733 hflB ATP-dependent me 95.7 0.016 3.5E-07 63.5 5.9 75 164-254 148-222 (644)
450 CHL00095 clpC Clp protease ATP 95.7 0.05 1.1E-06 61.3 9.9 47 210-258 536-583 (821)
451 PRK11124 artP arginine transpo 95.7 0.012 2.7E-07 55.6 4.5 41 209-252 25-65 (242)
452 PRK14490 putative bifunctional 95.7 0.013 2.8E-07 59.8 4.9 27 210-236 3-29 (369)
453 PRK11300 livG leucine/isoleuci 95.7 0.013 2.8E-07 55.8 4.5 42 209-253 28-69 (255)
454 TIGR03005 ectoine_ehuA ectoine 95.7 0.012 2.6E-07 56.1 4.4 42 209-253 23-64 (252)
455 cd03214 ABC_Iron-Siderophores_ 95.7 0.014 3E-07 53.0 4.6 42 209-253 22-63 (180)
456 cd03253 ABCC_ATM1_transporter 95.7 0.012 2.7E-07 55.2 4.4 41 209-252 24-64 (236)
457 cd03298 ABC_ThiQ_thiamine_tran 95.7 0.013 2.9E-07 54.1 4.5 41 210-253 22-62 (211)
458 PRK12377 putative replication 95.7 0.0084 1.8E-07 58.5 3.3 40 213-254 102-141 (248)
459 PF13481 AAA_25: AAA domain; P 95.7 0.014 3.1E-07 52.7 4.6 43 211-253 31-81 (193)
460 cd00550 ArsA_ATPase Oxyanion-t 95.7 0.012 2.5E-07 57.1 4.2 39 214-254 2-40 (254)
461 TIGR00767 rho transcription te 95.7 0.047 1E-06 57.1 8.9 88 210-303 166-259 (415)
462 PRK13540 cytochrome c biogenes 95.7 0.016 3.4E-07 53.5 4.9 43 209-254 24-66 (200)
463 TIGR01184 ntrCD nitrate transp 95.7 0.013 2.9E-07 55.3 4.5 27 210-236 9-35 (230)
464 PRK10895 lipopolysaccharide AB 95.7 0.013 2.9E-07 55.3 4.5 42 209-253 26-67 (241)
465 cd03244 ABCC_MRP_domain2 Domai 95.7 0.014 2.9E-07 54.4 4.5 41 209-252 27-67 (221)
466 PRK10575 iron-hydroxamate tran 95.7 0.012 2.5E-07 56.9 4.2 41 209-252 34-74 (265)
467 PF01656 CbiA: CobQ/CobB/MinD/ 95.7 0.013 2.7E-07 52.6 4.1 39 214-254 1-39 (195)
468 PRK07399 DNA polymerase III su 95.7 0.02 4.2E-07 57.6 5.9 51 166-238 2-52 (314)
469 cd02035 ArsA ArsA ATPase funct 95.7 0.011 2.4E-07 55.6 3.9 39 214-254 1-39 (217)
470 PRK10865 protein disaggregatio 95.7 0.053 1.2E-06 61.4 9.9 59 155-236 165-223 (857)
471 TIGR01277 thiQ thiamine ABC tr 95.7 0.014 2.9E-07 54.3 4.4 41 210-253 22-62 (213)
472 TIGR02012 tigrfam_recA protein 95.7 0.014 3E-07 59.1 4.8 42 210-253 53-94 (321)
473 cd02036 MinD Bacterial cell di 95.7 0.013 2.9E-07 51.8 4.2 38 214-253 2-39 (179)
474 cd03235 ABC_Metallic_Cations A 95.6 0.009 1.9E-07 55.3 3.2 39 209-250 22-60 (213)
475 cd01122 GP4d_helicase GP4d_hel 95.6 0.014 3.1E-07 55.9 4.7 42 210-252 28-69 (271)
476 PRK09183 transposase/IS protei 95.6 0.0091 2E-07 58.2 3.3 39 211-251 101-139 (259)
477 PF01745 IPT: Isopentenyl tran 95.6 0.014 3E-07 56.5 4.5 35 213-254 2-36 (233)
478 cd03228 ABCC_MRP_Like The MRP 95.6 0.017 3.6E-07 52.1 4.8 42 209-253 25-66 (171)
479 cd03246 ABCC_Protease_Secretio 95.6 0.017 3.7E-07 52.1 4.8 42 209-253 25-66 (173)
480 PRK15455 PrkA family serine pr 95.6 0.018 3.9E-07 62.8 5.8 26 211-236 102-127 (644)
481 PRK11629 lolD lipoprotein tran 95.6 0.01 2.2E-07 55.9 3.5 48 203-253 26-73 (233)
482 TIGR03608 L_ocin_972_ABC putat 95.6 0.01 2.2E-07 54.5 3.4 41 209-252 21-61 (206)
483 PF13476 AAA_23: AAA domain; P 95.6 0.011 2.4E-07 52.7 3.6 28 211-238 18-45 (202)
484 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.6 0.014 3E-07 55.0 4.3 40 209-251 26-65 (238)
485 PRK15177 Vi polysaccharide exp 95.6 0.01 2.2E-07 55.7 3.4 27 210-236 11-37 (213)
486 PRK09376 rho transcription ter 95.6 0.03 6.4E-07 58.5 7.1 90 211-303 168-260 (416)
487 cd03229 ABC_Class3 This class 95.6 0.011 2.4E-07 53.6 3.5 42 209-253 23-64 (178)
488 TIGR00382 clpX endopeptidase C 95.6 0.012 2.6E-07 61.5 4.3 35 212-251 116-150 (413)
489 PF06309 Torsin: Torsin; Inte 95.6 0.035 7.7E-07 49.3 6.6 53 169-237 26-78 (127)
490 COG3839 MalK ABC-type sugar tr 95.6 0.01 2.3E-07 60.5 3.7 48 209-259 26-73 (338)
491 TIGR03880 KaiC_arch_3 KaiC dom 95.6 0.019 4.2E-07 53.7 5.2 42 210-253 14-55 (224)
492 cd03238 ABC_UvrA The excision 95.6 0.0099 2.1E-07 54.9 3.2 31 204-234 13-43 (176)
493 cd04163 Era Era subfamily. Er 95.6 0.011 2.3E-07 50.2 3.2 24 212-235 3-26 (168)
494 COG2884 FtsE Predicted ATPase 95.6 0.016 3.4E-07 55.4 4.5 28 209-236 25-52 (223)
495 COG0542 clpA ATP-binding subun 95.6 0.028 6.1E-07 62.9 7.2 54 210-265 518-572 (786)
496 PRK13548 hmuV hemin importer A 95.6 0.014 3.1E-07 56.1 4.4 41 209-252 25-65 (258)
497 PRK11701 phnK phosphonate C-P 95.5 0.017 3.7E-07 55.4 4.7 41 209-252 29-69 (258)
498 COG1131 CcmA ABC-type multidru 95.5 0.016 3.6E-07 57.4 4.8 43 209-254 28-71 (293)
499 TIGR01978 sufC FeS assembly AT 95.5 0.011 2.4E-07 55.7 3.4 44 209-253 23-66 (243)
500 TIGR00416 sms DNA repair prote 95.5 0.018 3.9E-07 60.7 5.3 43 210-254 92-134 (454)
No 1
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.73 E-value=5.2e-17 Score=161.99 Aligned_cols=205 Identities=21% Similarity=0.309 Sum_probs=153.3
Q ss_pred chHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHH
Q 015774 80 PQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIM 159 (400)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 159 (400)
..+.++..++.++++.+...+...|.... .+.+++.++||||+ .||++|+|++.+ ..|+
T Consensus 32 ~~~~~~~~gl~k~~~~~~~~~~~~~~~~~-~~~~de~~~eeLE~--------------~Li~aDvg~e~~------~~i~ 90 (340)
T COG0552 32 GWFERLKQGLSKTKKNFGKGIKGLFLKKI-KEKLDEDLLEELEE--------------LLIEADVGVETA------EEII 90 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccchhHHHHHHHHH--------------HHHHccccHHHH------HHHH
Confidence 45889999999999999998866553331 13489999999999 999999999999 8999
Q ss_pred HHhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccccc-CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 160 AATRKQ--RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALS-ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 160 ~~~r~~--rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~-~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+|+. +-+++.....++..+...+.+ +.... ..+-.|.... ...|.+|++.|.||+||||.+.+||..+
T Consensus 91 ~~l~~~~~~~~~~~~~~~v~~~l~~~l~~---il~~~----~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l 163 (340)
T COG0552 91 EELRKREGKKKKIKDEETVKEALREALIE---ILRPV----DKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYL 163 (340)
T ss_pred HHHHHHhcccccCCCHHHHHHHHHHHHHH---Hhccc----ccccchhhhccCCCcEEEEEEecCCCchHhHHHHHHHHH
Confidence 999983 334455677778877777766 44200 0111123333 4579999999999999999999999999
Q ss_pred cccCCCCCeEEEeCCccccchHHHHHHhcC----CC----CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCC
Q 015774 237 FWSGAATNAVVVEADAFKETDVIYRALSSK----GH----HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLS 308 (400)
Q Consensus 237 g~~~~~~~avvIdaDefRe~D~irk~L~~~----G~----~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~ 308 (400)
..++..+++..+|+||.... +||... |. +......+..+++ .++.|.++|+||||-+|.+
T Consensus 164 --~~~g~~VllaA~DTFRAaAi--EQL~~w~er~gv~vI~~~~G~DpAaVafD--------Ai~~Akar~~DvvliDTAG 231 (340)
T COG0552 164 --KQQGKSVLLAAGDTFRAAAI--EQLEVWGERLGVPVISGKEGADPAAVAFD--------AIQAAKARGIDVVLIDTAG 231 (340)
T ss_pred --HHCCCeEEEEecchHHHHHH--HHHHHHHHHhCCeEEccCCCCCcHHHHHH--------HHHHHHHcCCCEEEEeCcc
Confidence 67888999999999996544 444211 11 1122334445544 4455999999999999999
Q ss_pred ChHHHHHHHHHHHhhh
Q 015774 309 WVPFVEQTIAMARNVH 324 (400)
Q Consensus 309 ~~~~re~~i~~arkvh 324 (400)
+.+.-.++|+.++++.
T Consensus 232 RLhnk~nLM~EL~KI~ 247 (340)
T COG0552 232 RLHNKKNLMDELKKIV 247 (340)
T ss_pred cccCchhHHHHHHHHH
Confidence 9999999999998864
No 2
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.72 E-value=6.3e-17 Score=149.48 Aligned_cols=135 Identities=27% Similarity=0.397 Sum_probs=96.5
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 208 ~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a 287 (400)
+...|.+++|+|+|||||||++..+...++ ..+.++||+|+||..+|.+..+... ++...+..++..+..++
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~----~~~~~~~~~~~~a~~~~ 82 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA----DPDEASELTQKEASRLA 82 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH----HCCCTHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh----hhhhhHHHHHHHHHHHH
Confidence 367999999999999999999999999873 3588999999999988887776542 12345566778888899
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccchhhhhhhcccccC
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFS 367 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~~~~~~~~~~~~ 367 (400)
+.+++.++++|+|||+|+|+.++....++++.+++ .||+
T Consensus 83 ~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~---------~GY~-------------------------------- 121 (199)
T PF06414_consen 83 EKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKA---------AGYK-------------------------------- 121 (199)
T ss_dssp HHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHC---------TT-E--------------------------------
T ss_pred HHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHc---------CCce--------------------------------
Confidence 99999999999999999999999988877777753 2443
Q ss_pred CCCcEEEEEEEEecchhHHHHHHHHHHHh
Q 015774 368 RKPYRIELVGVVCDAYLAVVRGIRYAYQY 396 (400)
Q Consensus 368 ~~py~~~~~~v~~~~~~av~r~~~r~~~t 396 (400)
++|+.|.|++.+++.|-..|...+
T Consensus 122 -----v~l~~v~~~~e~s~~rv~~R~~~~ 145 (199)
T PF06414_consen 122 -----VELYYVAVPPELSIERVRQRYEEG 145 (199)
T ss_dssp -----EEEEEE---HHHHHHHHHHHHHHH
T ss_pred -----EEEEEEECCHHHHHHHHHHHHHcc
Confidence 566667777777777777776666
No 3
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=6.9e-17 Score=156.07 Aligned_cols=183 Identities=20% Similarity=0.304 Sum_probs=139.6
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHH
Q 015774 153 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKD 231 (400)
Q Consensus 153 ~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~ 231 (400)
+.-..|-+.+++....-|++++.++ +++++++ ..++.++ +|.+|+.++. .+.|.+||++|+||.||||+|.+
T Consensus 36 ~iA~~i~e~L~~~~~~~v~~~eir~-~~~~l~~k~~~e~a~-----rY~lwR~ir~-~~~p~IILIGGasGVGkStIA~E 108 (299)
T COG2074 36 SIAIEIQEELKKEGIRLVTKDEIRE-VYQKLLEKGDPEVAK-----RYLLWRRIRK-MKRPLIILIGGASGVGKSTIAGE 108 (299)
T ss_pred HHHHHHHHHHHhCCCeEeeHHHHHH-HHHHHHHhcCHHHHH-----HHHHHHHHhc-cCCCeEEEecCCCCCChhHHHHH
Confidence 4445667778888878888888888 9999999 5555554 7999999984 56799999999999999999999
Q ss_pred HHHhccccCCCCCeEEEeCCccccchHHHHHHhcC----------------CCC--ChhhHhHHHHHHHH-HHHHHHHHH
Q 015774 232 IMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------------GHH--DDMLQTAELVHQSS-TDAASSLLV 292 (400)
Q Consensus 232 LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~----------------G~~--~d~~~aa~~v~~~~-~~~ae~lie 292 (400)
||.++|++ .+|++|.+|+ ++++.+... +.+ +.+.-+++.-|... ...++.+++
T Consensus 109 lA~rLgI~------~visTD~IRE--vlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~V~~GI~~VI~ 180 (299)
T COG2074 109 LARRLGIR------SVISTDSIRE--VLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVMVGIEAVIE 180 (299)
T ss_pred HHHHcCCc------eeecchHHHH--HHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHHhHHHHHHHHHHHH
Confidence 99999884 7899999996 555544322 111 12244556655544 778899999
Q ss_pred HHHhCCCcEEEECcCCChHHHHHHHH-H----------HHhhhhhhhhccCCeeeccCCchhhhhcccccc
Q 015774 293 TALNEGRDVIMDGTLSWVPFVEQTIA-M----------ARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKE 352 (400)
Q Consensus 293 ~AL~eG~dVIIDgT~~~~~~re~~i~-~----------arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e 352 (400)
+|+.+|.|+||||.+..|.+.+.-.. . .++.|+.+|+.+..|.. ...+..+|.++|.+
T Consensus 181 RAi~eG~~lIIEGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~~~t~--~~rp~~Ryl~yf~E 249 (299)
T COG2074 181 RAIEEGEDLIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRIRYTH--ASRPGGRYLEYFKE 249 (299)
T ss_pred HHHhcCcceEEEeeeeccccccHhhhccceEEEEEEeCCHHHHHHHHHHHHHHHh--ccCchhHHHHHHHH
Confidence 99999999999999999998864322 1 45789999998877763 23567777666655
No 4
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.55 E-value=1.5e-13 Score=137.11 Aligned_cols=200 Identities=19% Similarity=0.293 Sum_probs=134.2
Q ss_pred chHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHH
Q 015774 80 PQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIM 159 (400)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 159 (400)
.-+.+|..++.++.+++.+.|..+|++.+ +++++++|||+ .||.+|++++.+ ..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~l~~--------------~L~~~dv~~~~a------~~i~ 70 (318)
T PRK10416 15 GWFERLKKGLSKTRENFGEGINGLFAKKK----IDEDLLEELEE--------------LLIEADVGVETT------EEII 70 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHHH--------------HHHHCCCCHHHH------HHHH
Confidence 34679999999999999999999998665 89999999999 999999999998 7777
Q ss_pred HHhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 160 AATRKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 160 ~~~r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+..++.-.+. +.....+...+.+.+.+ +.. ....++....+.|.+|.+.|+|||||||++..||..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~l~-------~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l-- 138 (318)
T PRK10416 71 EELRERVKRKNLKDPEELKELLKEELAE---ILE-------PVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKY-- 138 (318)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHH---HhC-------cCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHH--
Confidence 7777653322 22333444444444443 331 1111233234578999999999999999999999988
Q ss_pred cCCCCCeEEEeCCccccchH----HHHHHhcCCC--CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHH
Q 015774 239 SGAATNAVVVEADAFKETDV----IYRALSSKGH--HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPF 312 (400)
Q Consensus 239 ~~~~~~avvIdaDefRe~D~----irk~L~~~G~--~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~ 312 (400)
...+..+.++++|.+|.... .+....+.+. .......+.. +...+..+..+++++||-+|.++.+.
T Consensus 139 ~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~--------v~~~l~~~~~~~~D~ViIDTaGr~~~ 210 (318)
T PRK10416 139 KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASV--------AFDAIQAAKARGIDVLIIDTAGRLHN 210 (318)
T ss_pred HhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHH--------HHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence 45567889999999984321 1111111110 0000011111 11234457789999999999888776
Q ss_pred HHHHHHHHHhh
Q 015774 313 VEQTIAMARNV 323 (400)
Q Consensus 313 re~~i~~arkv 323 (400)
-+..++.++++
T Consensus 211 ~~~l~~eL~~~ 221 (318)
T PRK10416 211 KTNLMEELKKI 221 (318)
T ss_pred CHHHHHHHHHH
Confidence 66666666554
No 5
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.44 E-value=8.9e-13 Score=137.30 Aligned_cols=194 Identities=15% Similarity=0.196 Sum_probs=123.4
Q ss_pred hhhhhhcCcchhhhhhHHHHHHHHhhhhh---hhhhhhhhHHHHHH-HHHHHHHHHHHhhCcCccccccccccccCCCCE
Q 015774 138 LMISQVLSVESEKKTKLKDFIMAATRKQR---FEKVTKDLKMKRVF-STLVEEMKAIRREGESHCTDVMVPAALSERSPV 213 (400)
Q Consensus 138 ~li~~~~~~~~~~~~~~~~~~~~~~r~~r---f~~v~~~~~vkr~~-~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~ 213 (400)
.||.+++|++.+ ..|++.+++.= -.++.....++..+ ..+.+.+... ....+.+|+++.. .+.|.
T Consensus 188 sLi~aDV~~~~A------~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~l~~~----~a~~y~la~~i~~-~k~p~ 256 (475)
T PRK12337 188 SLMAAGLAPDVA------RRLARETERDLRRSGDRVVRRDQLRRKVEALLLEEAGEE----VARRYRLLRSIRR-PPRPL 256 (475)
T ss_pred HHHHcCCCHHHH------HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHhhc-cCCCe
Confidence 899999999999 66666665421 12222223333333 3333322111 0113455666653 24699
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC----------------C-----C--
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH----------------H-----D-- 270 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~----------------~-----~-- 270 (400)
+|+++|+||+||||++..||.++|+. .+|++|.+|+ .++..+..... + .
T Consensus 257 vil~~G~~G~GKSt~a~~LA~~lg~~------~ii~tD~iR~--~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 257 HVLIGGVSGVGKSVLASALAYRLGIT------RIVSTDAVRE--VLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc------EEeehhHHHH--HHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 99999999999999999999999762 4789999884 23332222100 0 0
Q ss_pred --hhhHhHHHHHHH-HHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHH------------HHhhhhhhhhccCCee
Q 015774 271 --DMLQTAELVHQS-STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM------------ARNVHKSRYRMGVGYK 335 (400)
Q Consensus 271 --d~~~aa~~v~~~-~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~------------arkvh~~~yr~g~gY~ 335 (400)
+....++..|.. +...++.++++++.+|.+|||||.+..|.+++.-... ..+.|+.||..+..|.
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~ 408 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRET 408 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhc
Confidence 011123333332 2566889999999999999999999999987632211 2356889998887764
Q ss_pred eccCCchhhhhcccccc
Q 015774 336 VNEDGTVIENYWEQVKE 352 (400)
Q Consensus 336 v~~dg~~~E~Ywe~~~e 352 (400)
. ..++.+.|.++|.+
T Consensus 409 ~--~~r~~~ky~~~f~~ 423 (475)
T PRK12337 409 G--ASRPRERYLRHFEE 423 (475)
T ss_pred c--CCCchhHHHHhHHH
Confidence 3 45678888888776
No 6
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.42 E-value=1.4e-12 Score=129.54 Aligned_cols=179 Identities=20% Similarity=0.297 Sum_probs=123.2
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774 156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEM-KAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMK 234 (400)
Q Consensus 156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~-~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~ 234 (400)
..|.+.++++.-..++.++..+.++.+|.+.. ..++ .++.+|+.+.. .+.|.+|+++|+|||||||+|..|+.
T Consensus 41 ~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~~~-----~~y~~~~~i~~-~~~p~iIlI~G~sgsGKStlA~~La~ 114 (301)
T PRK04220 41 SEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEEVA-----EKYLLWRRIRK-SKEPIIILIGGASGVGTSTIAFELAS 114 (301)
T ss_pred HHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHhHH-----HHHHHHHHHhc-CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45555666666667778888888888887743 2222 24778877773 25799999999999999999999999
Q ss_pred hccccCCCCCeEEEeCCccccchHHHHHHhcC-----------------CCC-Chh-hHhHHHHHH-HHHHHHHHHHHHH
Q 015774 235 ESFWSGAATNAVVVEADAFKETDVIYRALSSK-----------------GHH-DDM-LQTAELVHQ-SSTDAASSLLVTA 294 (400)
Q Consensus 235 ~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-----------------G~~-~d~-~~aa~~v~~-~~~~~ae~lie~A 294 (400)
++++ . .+|++|.||+ .++..+... +.+ ++. .-.+...|. .+...+..+++++
T Consensus 115 ~l~~-----~-~vi~~D~~re--~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~~~~~v~~gi~~~I~~~ 186 (301)
T PRK04220 115 RLGI-----R-SVIGTDSIRE--VMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFERHVEPVSVGVEAVIERA 186 (301)
T ss_pred HhCC-----C-EEEechHHHH--HHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9965 2 5899999994 333222111 001 111 122222222 3366688999999
Q ss_pred HhCCCcEEEECcCCChHHHHHHHH------------HHHhhhhhhhhccCCeeeccCCchhhhhcccccc
Q 015774 295 LNEGRDVIMDGTLSWVPFVEQTIA------------MARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKE 352 (400)
Q Consensus 295 L~eG~dVIIDgT~~~~~~re~~i~------------~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e 352 (400)
+.+|.++|+||.+..|++.+.... ..++.|+.+|..+..|. .++.+.|.+++.+
T Consensus 187 ~~~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~----~r~~~~y~~~~~~ 252 (301)
T PRK04220 187 LKEGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVS----RRPAERYLKNFEI 252 (301)
T ss_pred HHhCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhh----CCchhhHHHHHHH
Confidence 999999999999999998775433 24567889988887774 4566666555544
No 7
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.38 E-value=4.9e-12 Score=108.76 Aligned_cols=92 Identities=26% Similarity=0.365 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC--ChhhHhHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH--DDMLQTAELVHQSSTDAASSLL 291 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~--~d~~~aa~~v~~~~~~~ae~li 291 (400)
||+|+|+|||||||+++.|++.++ ..+|+.|+++ ..+.+.+.. .+..... ......+...+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-------~~~i~~D~~~------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 63 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-------AVVISQDEIR------RRLAGEDPPSPSDYIEAE----ERAYQILNAAI 63 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-------EEEEEHHHHH------HHHCCSSSGCCCCCHHHH----HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-------CEEEeHHHHH------HHHcccccccchhHHHHH----HHHHHHHHHHH
Confidence 689999999999999999999984 5899988765 556543211 1111222 22334455577
Q ss_pred HHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..++..|.++|+|+|+..+..++.+.+++++
T Consensus 64 ~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~ 94 (143)
T PF13671_consen 64 RKALRNGNSVVVDNTNLSREERARLRELARK 94 (143)
T ss_dssp HHHHHTT-EEEEESS--SHHHHHHHHHHHHH
T ss_pred HHHHHcCCCceeccCcCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999888875
No 8
>COG0645 Predicted kinase [General function prediction only]
Probab=99.35 E-value=6.2e-12 Score=115.40 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=88.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC---CCCChhhHhHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---GHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~---G~~~d~~~aa~~v~~~~~~~ae 288 (400)
+.+++|+|.||+||||+|+.|++.+ ++++|.+|++ ++.|++. ...+...++.... ...+..+.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~l-------gA~~lrsD~i------rk~L~g~p~~~r~~~g~ys~~~~-~~vy~~l~ 66 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELL-------GAIRLRSDVI------RKRLFGVPEETRGPAGLYSPAAT-AAVYDELL 66 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhc-------CceEEehHHH------HHHhcCCcccccCCCCCCcHHHH-HHHHHHHH
Confidence 3689999999999999999999999 5699986655 4888872 1111222222222 44455555
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccch
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEE 355 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~ 355 (400)
.....+++.|++||+|+|+.++..|+.....+++.+ ..+..-.-..+.++.|++..+|..
T Consensus 67 ~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~g-------v~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 67 GRAELLLSSGHSVVLDATFDRPQERALARALARDVG-------VAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred HHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccC-------CceEEEEcCCcHHHHHHHHHHhCC
Confidence 678889999999999999999999999999888753 223222234577888888777654
No 9
>PRK10867 signal recognition particle protein; Provisional
Probab=99.24 E-value=4.4e-11 Score=124.12 Aligned_cols=173 Identities=19% Similarity=0.254 Sum_probs=102.5
Q ss_pred HHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhhhhhHHHH-HHHHHHHHHHHHHhh
Q 015774 116 KLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVTKDLKMKR-VFSTLVEEMKAIRRE 193 (400)
Q Consensus 116 ~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~~~~~vkr-~~~~liee~~~i~~~ 193 (400)
+.++|+++ .||.+|.+.+.. ..+++..+++-.. .+........ +...+.+++..+..
T Consensus 29 ~~l~ei~~--------------~Ll~aDV~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~- 87 (433)
T PRK10867 29 EALREVRL--------------ALLEADVNLPVV------KDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILG- 87 (433)
T ss_pred HHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhC-
Confidence 68899999 999999999988 6666766664322 2322211112 22222334333331
Q ss_pred CcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccccchHHHHHH---hcC-CC
Q 015774 194 GESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKETDVIYRAL---SSK-GH 268 (400)
Q Consensus 194 ~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefRe~D~irk~L---~~~-G~ 268 (400)
....++......|.+|+++|++||||||++..||..+ ... +..+.+|++|.||.... +++ ... |.
T Consensus 88 ------~~~~~~~~~~~~p~vI~~vG~~GsGKTTtaakLA~~l--~~~~G~kV~lV~~D~~R~aa~--eQL~~~a~~~gv 157 (433)
T PRK10867 88 ------GENSELNLAAKPPTVIMMVGLQGAGKTTTAGKLAKYL--KKKKKKKVLLVAADVYRPAAI--EQLKTLGEQIGV 157 (433)
T ss_pred ------CCcceeeecCCCCEEEEEECCCCCcHHHHHHHHHHHH--HHhcCCcEEEEEccccchHHH--HHHHHHHhhcCC
Confidence 1112233334579999999999999999999999877 344 66889999999996432 233 221 11
Q ss_pred CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 269 HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 269 ~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
+--..... ......+...++.+...++++||-+|.++...-+..+..+.++
T Consensus 158 ~v~~~~~~----~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i 208 (433)
T PRK10867 158 PVFPSGDG----QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAI 208 (433)
T ss_pred eEEecCCC----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHH
Confidence 10000000 0011223334555677899999999988765444555554443
No 10
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.23 E-value=1.2e-10 Score=120.83 Aligned_cols=176 Identities=14% Similarity=0.106 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhhHH-HHHHHHHHHHHHHH
Q 015774 113 LYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDLKM-KRVFSTLVEEMKAI 190 (400)
Q Consensus 113 l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~~v-kr~~~~liee~~~i 190 (400)
--.+.++|+++ .|+.+|.+.... ..+++..+++-. +++...... ..+...+.+++..+
T Consensus 26 ~i~~~l~ei~~--------------aLleaDV~~~vv------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~ 85 (429)
T TIGR01425 26 VLNAMLKEICT--------------ALLESDVNIKLV------RQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNL 85 (429)
T ss_pred HHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH
Confidence 44457888888 999999998877 555666665321 333332222 22223333343333
Q ss_pred HhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH---hcC-
Q 015774 191 RREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL---SSK- 266 (400)
Q Consensus 191 ~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L---~~~- 266 (400)
.. +...|+......|.+|+|+|++||||||++..||..+ ...+..+.++++|.+|.... .+| ...
T Consensus 86 l~-------~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l--~~~G~kV~lV~~D~~R~aA~--eQLk~~a~~~ 154 (429)
T TIGR01425 86 VD-------PGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYY--QRKGFKPCLVCADTFRAGAF--DQLKQNATKA 154 (429)
T ss_pred hC-------CCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCCEEEEcCcccchhHH--HHHHHHhhcc
Confidence 31 1112233334678999999999999999999999887 45566889999999995433 333 221
Q ss_pred CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 267 GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 267 G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
+.+-...... ......+...++.+.++++++||-+|.++.+.-+.++....++
T Consensus 155 ~vp~~~~~~~----~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i 207 (429)
T TIGR01425 155 RIPFYGSYTE----SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQV 207 (429)
T ss_pred CCeEEeecCC----CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHH
Confidence 1110000000 0011223334555667899999999998887767777766554
No 11
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.22 E-value=7.6e-11 Score=110.34 Aligned_cols=132 Identities=16% Similarity=0.283 Sum_probs=85.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-C-----------CCC---hhhHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-G-----------HHD---DMLQT 275 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G-----------~~~---d~~~a 275 (400)
.|.+|+++|+|||||||+++.|+.++|+ ..++.+|.+|+ .++...... . .++ +....
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~------~~~~~~D~~r~--~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~ 73 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAI------DIVLSGDYLRE--FLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVK 73 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC------eEEehhHHHHH--HHHHhcCCCCCcccccHHHHHHcCCcchhHHHH
Confidence 5789999999999999999999999864 26788888874 333322211 0 000 11111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHH----------HHhhhhhhhhccCCeeeccCCchhh
Q 015774 276 AELVH-QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM----------ARNVHKSRYRMGVGYKVNEDGTVIE 344 (400)
Q Consensus 276 a~~v~-~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~----------arkvh~~~yr~g~gY~v~~dg~~~E 344 (400)
+...| +.++.....++..++.+|.+||+|+++..+.+++..... ..+.+..|+..+..|. .+.++.+
T Consensus 74 ~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~--~~~~p~~ 151 (197)
T PRK12339 74 GYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYT--HKNSPGK 151 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcc--cCCCcHH
Confidence 22222 233566778899999999999999999999887532211 1234545555554443 2456778
Q ss_pred hhcccccc
Q 015774 345 NYWEQVKE 352 (400)
Q Consensus 345 ~Ywe~~~e 352 (400)
.|.++|.+
T Consensus 152 ~~~~~~~~ 159 (197)
T PRK12339 152 RLAEHLPE 159 (197)
T ss_pred HHHHHHHH
Confidence 88877766
No 12
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.19 E-value=1.6e-10 Score=112.07 Aligned_cols=98 Identities=24% Similarity=0.280 Sum_probs=68.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 291 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li 291 (400)
|.+|+|+|+|||||||+|+.|++++ .+..+|+.|+++ +.+...+......+.... ...........+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~------~~~~~l~~D~~r------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 68 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN------PKAVNVNRDDLR------QSLFGHGEWGEYKFTKEK-EDLVTKAQEAAA 68 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC------CCCEEEeccHHH------HHhcCCCcccccccChHH-HHHHHHHHHHHH
Confidence 6799999999999999999999998 144899999887 344332110001110000 011233445567
Q ss_pred HHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..++.+|.+||+|+|+..+..++.+.+++++
T Consensus 69 ~~~l~~g~~vIid~~~~~~~~~~~~~~la~~ 99 (300)
T PHA02530 69 LAALKSGKSVIISDTNLNPERRRKWKELAKE 99 (300)
T ss_pred HHHHHcCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence 7788999999999999999999888887764
No 13
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.17 E-value=2.5e-10 Score=118.39 Aligned_cols=177 Identities=18% Similarity=0.226 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhhhhhH-HHHHHHHHHHHHHH
Q 015774 112 SLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVTKDLK-MKRVFSTLVEEMKA 189 (400)
Q Consensus 112 ~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~~~~~-vkr~~~~liee~~~ 189 (400)
.-..+.++|+++ .|+.+|.+.+.. ..+++..+++-.+ ++..... ...+...+.+++..
T Consensus 24 ~~i~~~l~ei~~--------------~Ll~aDV~~~~v------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ 83 (428)
T TIGR00959 24 KNIKEALREIRL--------------ALLEADVNLQVV------KDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83 (428)
T ss_pred HHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHH
Confidence 344468889999 999999998877 5666666654322 2211111 12222233333333
Q ss_pred HHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH---hcC
Q 015774 190 IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL---SSK 266 (400)
Q Consensus 190 i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L---~~~ 266 (400)
+.. ....++......|.+++++|+|||||||++..||..+- ...+..+.+|++|.+|.... .++ ...
T Consensus 84 ~l~-------~~~~~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~-~~~g~kV~lV~~D~~R~~a~--~QL~~~a~~ 153 (428)
T TIGR00959 84 ILG-------GENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLK-KKQGKKVLLVACDLYRPAAI--EQLKVLGQQ 153 (428)
T ss_pred HhC-------CCCcccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCeEEEEeccccchHHH--HHHHHHHHh
Confidence 331 00112322345799999999999999999999998861 13456889999999995322 222 111
Q ss_pred -CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 267 -GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 267 -G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
+.+....... ......+...++.+..+++++||-+|.++...-+..+..+.+
T Consensus 154 ~gvp~~~~~~~----~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~ 206 (428)
T TIGR00959 154 VGVPVFALGKG----QSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAA 206 (428)
T ss_pred cCCceEecCCC----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHH
Confidence 1110000000 000122334555677899998888888865543445544433
No 14
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.15 E-value=3.3e-10 Score=116.83 Aligned_cols=183 Identities=20% Similarity=0.263 Sum_probs=115.8
Q ss_pred hcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhh-----hhHHHHH
Q 015774 105 SKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTK-----DLKMKRV 179 (400)
Q Consensus 105 ~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~-----~~~vkr~ 179 (400)
+...-.|.--.+.+.|+-. .|+.+|.....- +++-+.|-+..-. +.|.+ +.-++.|
T Consensus 18 g~~~i~E~~i~e~~reir~--------------ALLeADVnl~vV--k~fi~~ikera~g---~ev~~~l~p~q~~iKiV 78 (451)
T COG0541 18 GKGRITEKDVKEALREIRR--------------ALLEADVNLKVV--KDFIKRIKERALG---EEVPKGLTPGQQFIKIV 78 (451)
T ss_pred CCCcCCHHHHHHHHHHHHH--------------HHHhccccHHHH--HHHHHHHHHHhcc---ccCCCCCCHHHHHHHHH
Confidence 3444334444566677777 888888876544 2333333332222 22333 3445555
Q ss_pred HHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH
Q 015774 180 FSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259 (400)
Q Consensus 180 ~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i 259 (400)
+.+|++- +- . -..++....++|.+|+|+|+.||||||.+..||..+ ...+..+.++++|.+|....
T Consensus 79 ~eELv~l----lG-~------~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~l--kk~~~kvllVaaD~~RpAA~- 144 (451)
T COG0541 79 YEELVKL----LG-G------ENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYL--KKKGKKVLLVAADTYRPAAI- 144 (451)
T ss_pred HHHHHHH----hC-C------CCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHH--HHcCCceEEEecccCChHHH-
Confidence 5555443 31 0 111222235789999999999999999999999998 66788899999999996443
Q ss_pred HHHH---hcC-CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhh
Q 015774 260 YRAL---SSK-GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHK 325 (400)
Q Consensus 260 rk~L---~~~-G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~ 325 (400)
++| ... +.+. +.. ...+.....+.+.++.|-.+++||||-+|.++...-+.+++..++++.
T Consensus 145 -eQL~~La~q~~v~~-f~~---~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~ 209 (451)
T COG0541 145 -EQLKQLAEQVGVPF-FGS---GTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKE 209 (451)
T ss_pred -HHHHHHHHHcCCce-ecC---CCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHh
Confidence 444 222 2110 000 000112345667788899999999999999999988889888877654
No 15
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.09 E-value=4e-09 Score=103.29 Aligned_cols=168 Identities=17% Similarity=0.273 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhhHHHHHHHHHHHHHHHHH
Q 015774 113 LYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDLKMKRVFSTLVEEMKAIR 191 (400)
Q Consensus 113 l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~~vkr~~~~liee~~~i~ 191 (400)
+..++++||+. .|+.++++.+.+ ..+++..+++-- ++......+...+.+++.+ +.
T Consensus 2 ~~~~~~~~l~~--------------~L~~~dv~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~---~~ 58 (272)
T TIGR00064 2 DDEDFFEELEE--------------ILLESDVGYEVV------EKIIEALKKELKGKKVKDAELLKEILKEYLKE---IL 58 (272)
T ss_pred ccHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH---HH
Confidence 45789999999 999999999888 666776665321 2222233333444443333 32
Q ss_pred hhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH---hcC-C
Q 015774 192 REGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL---SSK-G 267 (400)
Q Consensus 192 ~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L---~~~-G 267 (400)
. ..-.++......|.+|+++|+||+||||++..||..+ ...+..+.++++|.||.... +++ ... +
T Consensus 59 ~-------~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D~~r~~a~--~ql~~~~~~~~ 127 (272)
T TIGR00064 59 K-------ETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGDTFRAAAI--EQLEEWAKRLG 127 (272)
T ss_pred c-------ccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCCCCCHHHH--HHHHHHHHhCC
Confidence 1 1111222234568899999999999999999999887 45667889999999985322 222 111 1
Q ss_pred CC----ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 268 HH----DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 268 ~~----~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
.+ ......+. .+...+..+..+++++||-+|.++.+.-...++..++
T Consensus 128 i~~~~~~~~~dp~~--------~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~ 178 (272)
T TIGR00064 128 VDVIKQKEGADPAA--------VAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKK 178 (272)
T ss_pred eEEEeCCCCCCHHH--------HHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHH
Confidence 10 00001111 1122344567789997777777766544445544433
No 16
>PRK06762 hypothetical protein; Provisional
Probab=99.07 E-value=7.9e-10 Score=98.40 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=62.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae~l 290 (400)
|.+|+|+|+|||||||+|+.|++.++ .++++++.|.++ +.+... +.++. .. ......+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~-----~~~~~i~~D~~r------~~l~~~~~~~~~--~~--------~~~~~~~ 60 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG-----RGTLLVSQDVVR------RDMLRVKDGPGN--LS--------IDLIEQL 60 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEecHHHHH------HHhccccCCCCC--cC--------HHHHHHH
Confidence 78999999999999999999999984 367889987766 444321 11111 11 1123335
Q ss_pred HHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 291 ie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
+..++..|.+||+|+++....+++.+..+++.
T Consensus 61 ~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~ 92 (166)
T PRK06762 61 VRYGLGHCEFVILEGILNSDRYGPMLKELIHL 92 (166)
T ss_pred HHHHHhCCCEEEEchhhccHhHHHHHHHHHHh
Confidence 55678899999999999877766655555543
No 17
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.05 E-value=6.5e-10 Score=117.95 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=66.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
...|.+|+|+|+|||||||+|+.++...|+ ++|+.|++.. ++ .+.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~-------~~vn~D~lg~------------------------~~----~~~ 410 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGY-------KHVNADTLGS------------------------TQ----NCL 410 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCC-------eEECcHHHHH------------------------HH----HHH
Confidence 467999999999999999999999998754 8999876531 01 122
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..+..+|++|.+||||+|+..+..|..++++|++
T Consensus 411 ~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~ 444 (526)
T TIGR01663 411 TACERALDQGKRCAIDNTNPDAASRAKFLQCARA 444 (526)
T ss_pred HHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3567799999999999999999999999999986
No 18
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.03 E-value=1e-09 Score=99.25 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCC--CCChhhHhHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG--HHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G--~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
..+|+|+|+|||||||+++.|++.++ ...++++.|+|+..-+....-...+ ..+++....+..++..+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 76 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA-----EPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYE 76 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC-----CCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHH
Confidence 35899999999999999999999973 2457789898873211100000000 0000011111223445555556
Q ss_pred HHHHHHhCCCcEEEECcCC-ChHHHHHHH
Q 015774 290 LLVTALNEGRDVIMDGTLS-WVPFVEQTI 317 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~-~~~~re~~i 317 (400)
.+..++++|.+||+|.++. .+..++.+.
T Consensus 77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~ 105 (175)
T cd00227 77 AVAAMARAGANVIADDVFLGRAALQDCWR 105 (175)
T ss_pred HHHHHHhCCCcEEEeeeccCCHHHHHHHH
Confidence 7788999999999999988 566555443
No 19
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.03 E-value=1.7e-09 Score=112.62 Aligned_cols=189 Identities=18% Similarity=0.219 Sum_probs=105.4
Q ss_pred ccchhhHHHhhhcCCCcchhHHH----HHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-
Q 015774 94 KGCEDNIYEYFSKEAEPESLYVK----LVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE- 168 (400)
Q Consensus 94 ~~~~~~i~~~~~~~~~~~~l~~~----~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~- 168 (400)
+++...+..++++.. |+++ .++|+++ .|+.+|.+.+.. ..+++..+++-..
T Consensus 3 ~~l~~~~~~l~~~~~----l~e~~i~~~l~ei~~--------------aLl~adV~~~~~------~~~~~~v~~~~~~~ 58 (437)
T PRK00771 3 ESLRDALKKLAGKSR----IDEKTVKEVVKDIQR--------------ALLQADVNVKLV------KELSKSIKERALEE 58 (437)
T ss_pred hHHHHHHHHHhCCCC----CCHHHHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhcc
Confidence 445556666766665 5555 8888999 999999998887 6666666653322
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774 169 KVTKDLKM-KRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV 247 (400)
Q Consensus 169 ~v~~~~~v-kr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv 247 (400)
.+...... ..+...+.+++..+.. ....++.. ...|.+|+|+|++|+||||++..||..+ ...+..+.+
T Consensus 59 ~~~~~~~~~~~~~~~v~~~L~~~l~-------~~~~~~~~-~~~p~vI~lvG~~GsGKTTtaakLA~~L--~~~g~kV~l 128 (437)
T PRK00771 59 EPPKGLTPREHVIKIVYEELVKLLG-------EETEPLVL-PLKPQTIMLVGLQGSGKTTTAAKLARYF--KKKGLKVGL 128 (437)
T ss_pred cccccCCcHHHHHHHHHHHHHHHhC-------CCcccccc-CCCCeEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEE
Confidence 22111111 1222333333333331 00011111 2579999999999999999999999987 455678899
Q ss_pred EeCCccccchH-HHHHHhcC-CCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 248 VEADAFKETDV-IYRALSSK-GHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 248 IdaDefRe~D~-irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
|++|.+|.... ..+.+... +.+....... ......+...++.+. +.++||-+|.++...-+.+++..+.
T Consensus 129 V~~D~~R~aa~eQL~~la~~~gvp~~~~~~~----~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~ 199 (437)
T PRK00771 129 VAADTYRPAAYDQLKQLAEKIGVPFYGDPDN----KDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKE 199 (437)
T ss_pred ecCCCCCHHHHHHHHHHHHHcCCcEEecCCc----cCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHH
Confidence 99999995321 11222221 1110000000 001112223333332 3487777777766665666655444
No 20
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.99 E-value=3.5e-09 Score=97.75 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=73.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC--CC--CChhhHhHHHHHHHHHHHHH
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GH--HDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~--~~d~~~aa~~v~~~~~~~ae 288 (400)
.+|+|.|+|-|||||+|+.|.+.+. ...++++.|+|+..-+ ...... |. .++.... .......+....
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~-----~p~~~l~~D~f~~~~~--~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP-----EPWLHLSVDTFVDMMP--PGRYRPGDGLEPAGDRPDG-GPLFRRLYAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS-----S-EEEEEHHHHHHHS---GGGGTSTTSEEEETTSEEE--HHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc-----CCeEEEecChHHhhcC--cccccCCccccccccCCch-hHHHHHHHHHHH
Confidence 5899999999999999999999983 4679999999984211 111111 10 0010111 122234444555
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccchhhhhhhcccccCC
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSR 368 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~~~~~~~~~~~~~ 368 (400)
..+....+.|.|||+|+.+..+.. +.+..++. -
T Consensus 74 ~~iaa~a~aG~~VIvD~v~~~~~~---l~d~l~~~--------------------------------------------L 106 (174)
T PF07931_consen 74 AAIAAMARAGNNVIVDDVFLGPRW---LQDCLRRL--------------------------------------------L 106 (174)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTHH---HHHHHHHH--------------------------------------------H
T ss_pred HHHHHHHhCCCCEEEecCccCcHH---HHHHHHHH--------------------------------------------h
Confidence 567778899999999988877543 22222110 0
Q ss_pred CCcEEEEEEEEecchhHHHHHHHH
Q 015774 369 KPYRIELVGVVCDAYLAVVRGIRY 392 (400)
Q Consensus 369 ~py~~~~~~v~~~~~~av~r~~~r 392 (400)
.+|.+-+|||+|+...+-.|=+.|
T Consensus 107 ~~~~vl~VgV~Cpleil~~RE~~R 130 (174)
T PF07931_consen 107 AGLPVLFVGVRCPLEILERRERAR 130 (174)
T ss_dssp TTS-EEEEEEE--HHHHHHHHHHH
T ss_pred CCCceEEEEEECCHHHHHHHHHhc
Confidence 356678899999999888777766
No 21
>PRK14974 cell division protein FtsY; Provisional
Probab=98.99 E-value=3.2e-09 Score=107.16 Aligned_cols=174 Identities=18% Similarity=0.264 Sum_probs=99.5
Q ss_pred HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhhhhhHHHH-HHHHHHHHHHHHHh
Q 015774 115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVTKDLKMKR-VFSTLVEEMKAIRR 192 (400)
Q Consensus 115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~~~~~vkr-~~~~liee~~~i~~ 192 (400)
.+.++||+. .|+.+|++.+.+ ..+++..++.-.+ ++........ +...+.+.+..+..
T Consensus 64 ~~~l~~l~~--------------~Ll~~dv~~~~a------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 123 (336)
T PRK14974 64 EDLLEELEL--------------ELLESDVALEVA------EEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLS 123 (336)
T ss_pred HHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHHhC
Confidence 478899999 999999999988 6666666653211 1211111111 22223333333432
Q ss_pred hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh---cC-CC
Q 015774 193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS---SK-GH 268 (400)
Q Consensus 193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~---~~-G~ 268 (400)
.. . -..+..++. ....|.+|+++|+||+||||++..|+..+ ...+..+.++++|.||.... .++. .. |.
T Consensus 124 ~~-~-~~~~~~~~~-~~~~~~vi~~~G~~GvGKTTtiakLA~~l--~~~g~~V~li~~Dt~R~~a~--eqL~~~a~~lgv 196 (336)
T PRK14974 124 VG-D-LFDLIEEIK-SKGKPVVIVFVGVNGTGKTTTIAKLAYYL--KKNGFSVVIAAGDTFRAGAI--EQLEEHAERLGV 196 (336)
T ss_pred CC-c-chhhhhhhh-ccCCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcCcHHHH--HHHHHHHHHcCC
Confidence 00 0 000111111 23468999999999999999999999877 44556788899999985332 2221 11 11
Q ss_pred CC----hhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 269 HD----DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 269 ~~----d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
+- .....+ ..+...++.+...|+++||-+|.++.+.-..+++.++++
T Consensus 197 ~v~~~~~g~dp~--------~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 197 KVIKHKYGADPA--------AVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred ceecccCCCCHH--------HHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 10 000111 112234445666899999988888776555555555443
No 22
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.96 E-value=3.3e-09 Score=101.23 Aligned_cols=92 Identities=25% Similarity=0.395 Sum_probs=65.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~ 293 (400)
+|+|+|+|||||||+|+.|++.+. ..+.++++++.|.+++....+. . ..... .......++..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~--~~~~~v~~i~~D~lr~~~~~~~---------~--~~e~~----~~~~~~~~i~~ 63 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS--EKNIDVIILGTDLIRESFPVWK---------E--KYEEF----IRDSTLYLIKT 63 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HcCCceEEEccHHHHHHhHHhh---------H--HhHHH----HHHHHHHHHHH
Confidence 589999999999999999999883 2345778998888763211000 0 00011 12223346778
Q ss_pred HHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 294 ALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 294 AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
+++.|..||+|+++....++.++..++++
T Consensus 64 ~l~~~~~VI~D~~~~~~~~r~~l~~~ak~ 92 (249)
T TIGR03574 64 ALKNKYSVIVDDTNYYNSMRRDLINIAKE 92 (249)
T ss_pred HHhCCCeEEEeccchHHHHHHHHHHHHHh
Confidence 99999999999999888888888887765
No 23
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.95 E-value=6.3e-09 Score=91.00 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~ 293 (400)
||+|+|+|||||||+++.|++.+++ .+++.|+++..........+ .+.......... ... .......
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~-------~~i~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~---~~~~~~~ 67 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGA-------PFIDGDDLHPPANIAKMAAG--IPLNDEDRWPWL-QAL---TDALLAK 67 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCC-------EEEeCcccccHHHHHHHHcC--CCCCccchhhHH-HHH---HHHHHHH
Confidence 5899999999999999999999854 89999999853221112222 111100000111 111 1112222
Q ss_pred HHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774 294 ALNEGRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 294 AL~eG~dVIIDgT~~~~~~re~~i~~a 320 (400)
.+.+|.+||+|+++....+++.+..++
T Consensus 68 l~~~~~~vVid~~~~~~~~r~~~~~~~ 94 (150)
T cd02021 68 LASAGEGVVVACSALKRIYRDILRGGA 94 (150)
T ss_pred HHhCCCCEEEEeccccHHHHHHHHhcC
Confidence 235899999999998887776665554
No 24
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.92 E-value=6.4e-09 Score=94.50 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=69.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
...|.+|+|+|+|||||||+++.|+..+. ..+.+++++++|.++ +.+.......+ ... ......+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~--~~~~~~~~l~~d~~r------~~l~~~~~~~~-----~~~-~~~~~~~~ 80 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE--SKGYRVYVLDGDNVR------HGLNKDLGFSE-----EDR-KENIRRIG 80 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECChHHH------hhhccccCCCH-----HHH-HHHHHHHH
Confidence 46789999999999999999999999873 233457899988876 44433210111 111 11122333
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
.++...+.+|.+||+|+++....+++.+..++++
T Consensus 81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~ 114 (184)
T TIGR00455 81 EVAKLFVRNGIIVITSFISPYRADRQMVRELIEK 114 (184)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcC
Confidence 4566678999999999999998888777776654
No 25
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.91 E-value=5.5e-09 Score=95.03 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=66.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l 290 (400)
+|.+|+|+|.|||||||+|+.|.+++ ...+.+++++|+|.+|. .|... .....+. ..+..+.+..+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L--~~~g~~~~~LDgD~lR~------~l~~d-----l~fs~~d-R~e~~rr~~~~ 66 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRL--FARGIKVYLLDGDNLRH------GLNAD-----LGFSKED-REENIRRIAEV 66 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEEHHHHCT------TTTTT-------SSHHH-HHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEecCcchhh------ccCCC-----CCCCHHH-HHHHHHHHHHH
Confidence 47899999999999999999999998 45678999999999883 33321 1111111 12223445557
Q ss_pred HHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 291 ie~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
+....++|..||+...-..++.++.+++...
T Consensus 67 A~ll~~~G~ivIva~isp~~~~R~~~R~~~~ 97 (156)
T PF01583_consen 67 AKLLADQGIIVIVAFISPYREDREWARELIP 97 (156)
T ss_dssp HHHHHHTTSEEEEE----SHHHHHHHHHHHH
T ss_pred HHHHHhCCCeEEEeeccCchHHHHHHHHhCC
Confidence 7778889999999999888888887776665
No 26
>PRK12338 hypothetical protein; Provisional
Probab=98.88 E-value=5.5e-09 Score=104.78 Aligned_cols=117 Identities=18% Similarity=0.292 Sum_probs=76.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----------------Chh-
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----------------DDM- 272 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----------------~d~- 272 (400)
..|.+|+++|+|||||||+|+.||+++|+. .++++|.+|+ .++..+...-.| ..+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~------~~~~tD~~r~--~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~ 73 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIK------HLIETDFIRE--VVRGIIGKEYAPALHKSSYNAYTALRDKENFK 73 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCe------EEccChHHHH--HHcCCCCcccCchhhcccHHHHhhcCCccccc
Confidence 368999999999999999999999999761 3458888773 222211110000 000
Q ss_pred -----hHhHHHH-HHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHH------------HHHhhhhhhhhccCCe
Q 015774 273 -----LQTAELV-HQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIA------------MARNVHKSRYRMGVGY 334 (400)
Q Consensus 273 -----~~aa~~v-~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~------------~arkvh~~~yr~g~gY 334 (400)
...+... ...+...+..++.+++.+|.+|||||.+..|.+...... --++.|..||+.+..|
T Consensus 74 ~~~~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~ 153 (319)
T PRK12338 74 NNEELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAME 153 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhc
Confidence 0011111 234467777899999999999999999999998874221 0235677888776544
No 27
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.88 E-value=6.4e-09 Score=92.51 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=62.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAASSLLV 292 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae~lie 292 (400)
+|+|+|+|||||||+++.|+..+.+ .+.++++++.|.++ +.+... +..+.. . ......+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~--~g~~~~~i~~d~~r------~~l~~~~~~~~~~-----~--~~~~~~~~~~a~ 65 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ--RGRPVYVLDGDNVR------HGLNKDLGFSRED-----R--EENIRRIAEVAK 65 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEEcCHHHH------HhhhhccCCCcch-----H--HHHHHHHHHHHH
Confidence 4789999999999999999999832 23367889988776 334321 111110 0 111223334555
Q ss_pred HHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774 293 TALNEGRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 293 ~AL~eG~dVIIDgT~~~~~~re~~i~~a 320 (400)
..+++|.+||+|.++.++..+..+.+++
T Consensus 66 ~l~~~G~~VIid~~~~~~~~R~~~~~l~ 93 (149)
T cd02027 66 LLADAGLIVIAAFISPYREDREAARKII 93 (149)
T ss_pred HHHhCCCEEEEccCCCCHHHHHHHHHhc
Confidence 6778999999999999988887776665
No 28
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.84 E-value=2.4e-08 Score=88.69 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=57.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 294 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~A 294 (400)
|+|+|+|||||||+++.|++.++ ..+++.|+|.....+...+.+.+..+. .. ..........+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-------~~~v~~D~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~ 66 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-------AKFIEGDDLHPAANIEKMSAGIPLNDD--DR-----WPWLQNLNDASTAA 66 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-------CeEEeCccccChHHHHHHHcCCCCChh--hH-----HHHHHHHHHHHHHH
Confidence 57899999999999999999985 488999999743223333333221111 10 11112233355567
Q ss_pred HhCCCcEEEECcCCChHHHHHH
Q 015774 295 LNEGRDVIMDGTLSWVPFVEQT 316 (400)
Q Consensus 295 L~eG~dVIIDgT~~~~~~re~~ 316 (400)
+..|.++|++.|+..+.+++.+
T Consensus 67 l~~~~~~Vi~~t~~~~~~r~~~ 88 (163)
T TIGR01313 67 AAKNKVGIITCSALKRHYRDIL 88 (163)
T ss_pred HhcCCCEEEEecccHHHHHHHH
Confidence 7888888999998877666544
No 29
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4e-08 Score=100.50 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHhh
Q 015774 115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVE-EMKAIRRE 193 (400)
Q Consensus 115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~lie-e~~~i~~~ 193 (400)
...|+|+.+ +||.+|++..-- ++++.+|.+.. .++++..-..-++.+...+. |+-.++
T Consensus 29 ~~~L~eI~~--------------ALLesDV~~~lV--~~l~~nir~~i---~~~~~~~G~nk~r~i~~~vf~eL~kl~-- 87 (483)
T KOG0780|consen 29 NTMLKEICR--------------ALLESDVNPRLV--KELRENIRKII---NLEKLASGVNKRRIIQKAVFDELVKLL-- 87 (483)
T ss_pred HHHHHHHHH--------------HHHhccCCHHHH--HHHHHHHHHHh---chhhhccccCHHHHHHHHHHHHHHHHh--
Confidence 448899999 999999995533 34444444333 23334333344455555544 322232
Q ss_pred CcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CCC
Q 015774 194 GESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GHH 269 (400)
Q Consensus 194 ~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~~ 269 (400)
.+-..++.+....|.+|++.|+.|+||||.+..||..+ ...|..+.++.+|+||.. -+.+|.. . +.|
T Consensus 88 -----dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~--kkkG~K~~LvcaDTFRag--AfDQLkqnA~k~~iP 158 (483)
T KOG0780|consen 88 -----DPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYY--KKKGYKVALVCADTFRAG--AFDQLKQNATKARVP 158 (483)
T ss_pred -----CCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHH--HhcCCceeEEeecccccc--hHHHHHHHhHhhCCe
Confidence 22223344446789999999999999999999999998 566778899999999952 2344422 1 111
Q ss_pred ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 270 DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 270 ~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
- +. ..........+..-+++.-+++++|||-+|-++...-..+++...++
T Consensus 159 ~---yg-syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v 208 (483)
T KOG0780|consen 159 F---YG-SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQV 208 (483)
T ss_pred e---Ee-cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHH
Confidence 0 00 00001113455667788999999999999998877666666655443
No 30
>COG4639 Predicted kinase [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=92.38 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=67.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 291 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li 291 (400)
+.+++|+|+|||||||+|+..-... .+++.|+|+. .+... .....+........+.+...+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~---------~~lsld~~r~------~lg~~----~~~e~sqk~~~~~~~~l~~~l 62 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQN---------YVLSLDDLRL------LLGVS----ASKENSQKNDELVWDILYKQL 62 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCc---------ceecHHHHHH------Hhhhc----hhhhhccccHHHHHHHHHHHH
Confidence 5689999999999999999865443 6899888872 22111 001111111122345556678
Q ss_pred HHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 292 VTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 292 e~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
+..+..|...|+|.|+.++..+..+++++.+.
T Consensus 63 ~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y 94 (168)
T COG4639 63 EQRLRRGKFTIIDATNLRREDRRKLIDLAKAY 94 (168)
T ss_pred HHHHHcCCeEEEEcccCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999874
No 31
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.73 E-value=7.9e-08 Score=86.58 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=59.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~ae 288 (400)
..+.+|+|+|+|||||||+++.|+..+. ..+.++.++++|.++ +.+... +..... . ... ...+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~--~~g~~v~~id~D~~~------~~~~~~~~~~~~~-r-~~~-----~~~~~ 66 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR--EAGYPVEVLDGDAVR------TNLSKGLGFSKED-R-DTN-----IRRIG 66 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEcCccHH------HHHhcCCCCChhh-H-HHH-----HHHHH
Confidence 3577999999999999999999999983 234467889999876 333321 111110 0 011 11112
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ 319 (400)
.+.......|..||++++......++.+...
T Consensus 67 ~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~ 97 (175)
T PRK00889 67 FVANLLTRHGVIVLVSAISPYRETREEVRAN 97 (175)
T ss_pred HHHHHHHhCCCEEEEecCCCCHHHHHHHHhh
Confidence 2333345689999999987655555544333
No 32
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.71 E-value=7.6e-08 Score=86.74 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=56.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
..+|.+|+++|+|||||||+++.|+..+. ..+.+.++++.|.++ +.+...+. +...... ......
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~~~d~~r------~~~~~~~~--~~~~~~~-----~~~~~~ 68 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYLDGDELR------EILGHYGY--DKQSRIE-----MALKRA 68 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEecHHHH------hhcCCCCC--CHHHHHH-----HHHHHH
Confidence 35788999999999999999999999983 344567899888765 32322121 1111111 111222
Q ss_pred HHHHHHHhCCCcEEEECcCCChH
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVP 311 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~ 311 (400)
.+.....+.|..||+|++.....
T Consensus 69 ~l~~~l~~~g~~VI~~~~~~~~~ 91 (176)
T PRK05541 69 KLAKFLADQGMIVIVTTISMFDE 91 (176)
T ss_pred HHHHHHHhCCCEEEEEeCCcHHH
Confidence 23333457899999999876433
No 33
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.67 E-value=1.6e-07 Score=84.64 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=54.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC-ccccchHHHHHHhcCCCCChhhHhHHHHHH---HHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD-AFKETDVIYRALSSKGHHDDMLQTAELVHQ---SSTDAASS 289 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD-efRe~D~irk~L~~~G~~~d~~~aa~~v~~---~~~~~ae~ 289 (400)
+|+|.|+|||||||+++.|++.+|+ ++|+.| .+| +.+... . +........... .....+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~-------~~is~~d~lr------~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~ 65 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGF-------THLSAGDLLR------AEIKSG-S-ENGELIESMIKNGKIVPSEVTVK 65 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC-------eEEECChHHH------HHHhcC-C-hHHHHHHHHHHCCCcCCHHHHHH
Confidence 5899999999999999999999955 899974 443 333211 0 000000000000 00112223
Q ss_pred HHHHHHhC--CCcEEEECcCCChHHHHHHHHHH
Q 015774 290 LLVTALNE--GRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 290 lie~AL~e--G~dVIIDgT~~~~~~re~~i~~a 320 (400)
++..++.+ +..+||||...+....+.+...+
T Consensus 66 ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~ 98 (183)
T TIGR01359 66 LLKNAIQADGSKKFLIDGFPRNEENLEAWEKLM 98 (183)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHH
Confidence 44445532 67899999998887777665554
No 34
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.66 E-value=7.9e-08 Score=103.87 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
..+|.+|+|+|+|||||||+|+.|+..+++ .+.++++|+.|++| +.+.+. .+ +..+. ....+..+.
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~--~~~~~~~l~~D~~r------~~l~~~-~~----~~~~~-r~~~~~~l~ 522 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHA--LGRHTYLLDGDNVR------HGLNRD-LG----FSDAD-RVENIRRVA 522 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHH--cCCCEEEEcChhhh------hccCCC-CC----CCHHH-HHHHHHHHH
Confidence 446999999999999999999999999843 35578999999988 334331 11 11010 012223333
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
.++...+++|.+||+|.++.....++.+++++.+
T Consensus 523 ~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~ 556 (632)
T PRK05506 523 EVARLMADAGLIVLVSFISPFREERELARALHGE 556 (632)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHhccc
Confidence 4556677899999999999998888877766643
No 35
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.65 E-value=1.4e-07 Score=87.23 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc-CCCCChhhHhHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~-~G~~~d~~~aa~~v~~~~~~~a 287 (400)
..+|.+|.|+|.|||||||+++.|+..+. ..+.+.+++++|.++. .+.. .+.... .. ...+..+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~--~~~~~~~~ld~d~~~~------~~~~~~~~~~~--~~-----~~~~~~l 85 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH--ELGVSTYLLDGDNVRH------GLCSDLGFSDA--DR-----KENIRRV 85 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH--hCCCCEEEEcCEeHHh------hhhhcCCcCcc--cH-----HHHHHHH
Confidence 46789999999999999999999999873 2355789999998872 2222 111111 11 1111223
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..++...+.+|..||.+........++.+++++.+
T Consensus 86 ~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~ 120 (198)
T PRK03846 86 GEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGE 120 (198)
T ss_pred HHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHccc
Confidence 33556677899998877666677888888887754
No 36
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.64 E-value=6.5e-07 Score=92.17 Aligned_cols=113 Identities=10% Similarity=0.108 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHh
Q 015774 114 YVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQR-FEKVTKDLKMKRVFSTLVEEMKAIRR 192 (400)
Q Consensus 114 ~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~r-f~~v~~~~~vkr~~~~liee~~~i~~ 192 (400)
....+++|++ .|+.++++++.. ..+++.+++.. .+.......+.+.+..++.+ ...
T Consensus 107 ~~~~~~~l~~--------------~L~~~dv~~~~~------~~i~~~~~~~~~~~~~~~~~~v~~~l~~~l~~---~i~ 163 (388)
T PRK12723 107 NHPTILKIED--------------ILRENDFSESYI------KDINEFIKKEFSLSDLDDYDKVRDSVIIYIAK---TIK 163 (388)
T ss_pred CHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH---Hhh
Confidence 3566889999 999999998888 77777776642 22222223333333333332 211
Q ss_pred hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCCccccchH
Q 015774 193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADAFKETDV 258 (400)
Q Consensus 193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~--~~~~~avvIdaDefRe~D~ 258 (400)
...|. .....|.+|++.|++|+||||++..||..+-.. ..+..+.++++|.||....
T Consensus 164 --------~~~~~-~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~ 222 (388)
T PRK12723 164 --------CSGSI-IDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK 222 (388)
T ss_pred --------ccCcc-ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH
Confidence 00111 113468899999999999999999999887321 2356789999999995443
No 37
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.60 E-value=1.1e-06 Score=97.07 Aligned_cols=139 Identities=11% Similarity=0.018 Sum_probs=87.0
Q ss_pred cchHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHH
Q 015774 79 CPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFI 158 (400)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 158 (400)
-+.+.+|..++-+..+-+.+.+..+|....+ ......+.++|++ .||.++++.+.. ..+
T Consensus 89 ~~~~~~l~~El~~lk~~L~~~l~~~~~~~~~-~~~~~~~~~~l~~--------------~Ll~~dv~~~la------~~l 147 (767)
T PRK14723 89 PGAIGDLRGELQSMRGMLERQLAGLLWAAGE-VAGRDPLRASLFR--------------WLLGAGFSGQLA------RAL 147 (767)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccChHHHHHHHH--------------HHHHCCCCHHHH------HHH
Confidence 3567888888766666666656666532111 2355778888999 999999998877 666
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
++.+.+. .....+...+.+.+.+...+. ......-..+.+|.+.|++|+||||++..|+..+-.
T Consensus 148 ~~~l~~~-----~~~~~~~~~l~~~L~~~l~il-----------~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~ 211 (767)
T PRK14723 148 LERLPVG-----YDRPAAMAWIRNELATHLPVL-----------RDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVA 211 (767)
T ss_pred HHHHHhc-----CCHHHHHHHHHHHHHHHhhhc-----------cCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHH
Confidence 6666543 112223333333333211111 011111134789999999999999999999987621
Q ss_pred cCCC-CCeEEEeCCcccc
Q 015774 239 SGAA-TNAVVVEADAFKE 255 (400)
Q Consensus 239 ~~~~-~~avvIdaDefRe 255 (400)
..+ ..+.+++.|.+|.
T Consensus 212 -~~G~kkV~lit~Dt~Ri 228 (767)
T PRK14723 212 -REGADQLALLTTDSFRI 228 (767)
T ss_pred -HcCCCeEEEecCcccch
Confidence 233 3678999999994
No 38
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.58 E-value=2.5e-07 Score=99.25 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=71.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
.++|.+|+|+|+|||||||+++.|+..+++ ..+.++.++|+|.+| +.+.+. . .+... + .......+.
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~-~~g~~~~~lD~D~vr------~~l~ge--~-~f~~~-e--r~~~~~~l~ 455 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLME-MRGRPVTLLDGDVVR------KHLSSE--L-GFSKE-D--RDLNILRIG 455 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhh-ccCceEEEeCCcHHH------HhccCC--C-CCCHH-H--HHHHHHHHH
Confidence 467899999999999999999999999963 134457999988775 455442 0 01110 0 011122222
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
.++...++.|..||+|.++.....++.+++++++
T Consensus 456 ~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~ 489 (568)
T PRK05537 456 FVASEITKNGGIAICAPIAPYRATRREVREMIEA 489 (568)
T ss_pred HHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhh
Confidence 3455677899999999999999999999888865
No 39
>PLN02200 adenylate kinase family protein
Probab=98.57 E-value=6.7e-07 Score=85.75 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=35.7
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..+..+.|.+|+|.|+|||||||+++.|++.+|+ .+|+.+++
T Consensus 34 ~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~-------~his~gdl 77 (234)
T PLN02200 34 RGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFGF-------KHLSAGDL 77 (234)
T ss_pred ccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhCC-------eEEEccHH
Confidence 333444677899999999999999999999999965 78987443
No 40
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.56 E-value=3.2e-07 Score=85.59 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~a 287 (400)
..+|.+|+++|+|||||||+|.+|.+.+ ...|..+.++|+|.+| ..|... |.... . ..+..+.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L--~~~G~~~y~LDGDnvR------~gL~~dLgFs~e--d-----R~eniRRv 84 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKL--FAKGYHVYLLDGDNVR------HGLNRDLGFSRE--D-----RIENIRRV 84 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHH--HHcCCeEEEecChhHh------hcccCCCCCChH--H-----HHHHHHHH
Confidence 4678999999999999999999999999 4678899999999887 566542 32211 1 12223445
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHH
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQT 316 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~ 316 (400)
..++....++|.-||+--.-.....+++.
T Consensus 85 aevAkll~daG~iviva~ISP~r~~R~~a 113 (197)
T COG0529 85 AEVAKLLADAGLIVIVAFISPYREDRQMA 113 (197)
T ss_pred HHHHHHHHHCCeEEEEEeeCccHHHHHHH
Confidence 55666677788776665444433333333
No 41
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.55 E-value=1.2e-06 Score=92.51 Aligned_cols=133 Identities=8% Similarity=0.040 Sum_probs=85.2
Q ss_pred HHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHh
Q 015774 83 CKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAAT 162 (400)
Q Consensus 83 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
..|..++-...+.+.+.+..++.++.. .+....+||++ .|+.++++.+.+ ..+++.+
T Consensus 166 ~~l~~El~~lr~~l~~~~~~l~~~~~~---~~~p~~~~l~~--------------~Ll~~dv~~~la------~~l~~~l 222 (484)
T PRK06995 166 DTVMQELRSLRGMLEEQLASLAWGERQ---RRDPVRAALLK--------------HLLAAGFSAQLV------RMLVDNL 222 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc---cccHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHH
Confidence 445666655566666666666643321 45677799999 999999998888 6777766
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
++.. ....+...+...+++..... .........+.+|+|.|++|+||||++..|+..+-. ..+
T Consensus 223 ~~~~-----~~~~~~~~l~~~l~~~l~~~-----------~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~-~~G 285 (484)
T PRK06995 223 PEGD-----DAEAALDWVQSALAKNLPVL-----------DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVM-RHG 285 (484)
T ss_pred Hhhh-----chhHHHHHHHHHHHHHHhhc-----------cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHH-hcC
Confidence 5532 11233444444444322111 001111235689999999999999999999987632 222
Q ss_pred -CCeEEEeCCcccc
Q 015774 243 -TNAVVVEADAFKE 255 (400)
Q Consensus 243 -~~avvIdaDefRe 255 (400)
..+.+|+.|.+|.
T Consensus 286 ~~kV~LI~~Dt~Ri 299 (484)
T PRK06995 286 ASKVALLTTDSYRI 299 (484)
T ss_pred CCeEEEEeCCccch
Confidence 3678899999984
No 42
>PRK14532 adenylate kinase; Provisional
Probab=98.55 E-value=2.4e-07 Score=84.27 Aligned_cols=93 Identities=24% Similarity=0.257 Sum_probs=53.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCC----hhhHhHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD----DMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~----d~~~aa~~v~~~~~~~ae~ 289 (400)
-|+|.|+|||||||+++.|++.+|+ .+|+.|++-. +.+....... .....+..+.. ..+..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~-------~~is~~d~lr-----~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~ 66 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGM-------VQLSTGDMLR-----AAIASGSELGQRVKGIMDRGELVSD---EIVIA 66 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-------eEEeCcHHHH-----HHHHcCCHHHHHHHHHHHCCCccCH---HHHHH
Confidence 3789999999999999999999965 8999855431 2221100000 00000000000 11112
Q ss_pred HHHHHH---hCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 290 LLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 290 lie~AL---~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
++...+ ..|..+|+||...+...++.+.+++.
T Consensus 67 ~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~ 101 (188)
T PRK14532 67 LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLA 101 (188)
T ss_pred HHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHH
Confidence 222222 35778999999998887777766554
No 43
>PRK14527 adenylate kinase; Provisional
Probab=98.55 E-value=7.3e-07 Score=81.77 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=57.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHH---HHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQ---SSTD 285 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~---~~~~ 285 (400)
.+.|.+|+|.|+|||||||+++.|++++++ .+++.|++- ++.+... . +........... ....
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~-------~~is~gd~~-----r~~~~~~-~-~~~~~~~~~~~~g~~~p~~ 68 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGL-------KKLSTGDIL-----RDHVARG-T-ELGQRAKPIMEAGDLVPDE 68 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCC-------CCCCccHHH-----HHHHhcC-c-HHHHHHHHHHHcCCCCcHH
Confidence 357889999999999999999999999965 788875543 2222211 0 000000000000 0011
Q ss_pred HHHHHHHHHHhC--CCcEEEECcCCChHHHHHHHHHHH
Q 015774 286 AASSLLVTALNE--GRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 286 ~ae~lie~AL~e--G~dVIIDgT~~~~~~re~~i~~ar 321 (400)
....++...+.+ +..+||||...+...++.+..+++
T Consensus 69 ~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~ 106 (191)
T PRK14527 69 LILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLE 106 (191)
T ss_pred HHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHH
Confidence 233344444543 467999997777776665555543
No 44
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=6.2e-07 Score=82.29 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC-ChhhHhHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~-~d~~~aa~~v~~~~~~~a 287 (400)
++.|-+|++.|++||||||++++|+++++| -++++|+|.......++-. |.+ +|..++.++- .+
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~~-------~F~dgDd~Hp~~NveKM~~--GipLnD~DR~pWL~------~i 73 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELGL-------KFIDGDDLHPPANVEKMTQ--GIPLNDDDRWPWLK------KI 73 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhCC-------cccccccCCCHHHHHHHhc--CCCCCcccccHHHH------HH
Confidence 466779999999999999999999999988 7999999996444333222 322 2222222221 11
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHH
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIA 318 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~ 318 (400)
...+..++..|.-||+-+......||+-+..
T Consensus 74 ~~~~~~~l~~~q~vVlACSaLKk~YRdILr~ 104 (191)
T KOG3354|consen 74 AVELRKALASGQGVVLACSALKKKYRDILRH 104 (191)
T ss_pred HHHHHHHhhcCCeEEEEhHHHHHHHHHHHHh
Confidence 1123336669999999999998888876655
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=4.6e-07 Score=94.95 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=66.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.|||++|++++.+.+++..+..|++.|.. +..+..+||.|+||+||||+|..|+++++|
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~-------------------g~~~~~lLL~GppG~GKTtla~ala~el~~ 65 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLK-------------------GKPKKALLLYGPPGVGKTSLAHALANDYGW 65 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc-------------------CCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999999999999998542 233678999999999999999999999976
Q ss_pred cCCCCCeEEEeCCccccchHHHH
Q 015774 239 SGAATNAVVVEADAFKETDVIYR 261 (400)
Q Consensus 239 ~~~~~~avvIdaDefRe~D~irk 261 (400)
.++.+++.+.+..+.+..
T Consensus 66 -----~~ielnasd~r~~~~i~~ 83 (482)
T PRK04195 66 -----EVIELNASDQRTADVIER 83 (482)
T ss_pred -----CEEEEcccccccHHHHHH
Confidence 778888877775444433
No 46
>PRK13948 shikimate kinase; Provisional
Probab=98.43 E-value=7.1e-07 Score=82.78 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=34.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.|..|+|.|.|||||||+++.|++.+|+ .+||+|.+.
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~D~~i 45 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALML-------HFIDTDRYI 45 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEECCHHH
Confidence 457889999999999999999999999976 688999765
No 47
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=4.1e-06 Score=87.83 Aligned_cols=108 Identities=22% Similarity=0.244 Sum_probs=76.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH-------hcCCCCChhhHhHHHHH-
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL-------SSKGHHDDMLQTAELVH- 280 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L-------~~~G~~~d~~~aa~~v~- 280 (400)
.+.|-+|.++|.+|.||||-...|+-.+ -++.-.+.+...|+||.-.+ ++| ... ++++...-+.-|
T Consensus 375 ~krPYVi~fvGVNGVGKSTNLAKIayWL--lqNkfrVLIAACDTFRsGAv--EQLrtHv~rl~~l--~~~~v~lfekGYg 448 (587)
T KOG0781|consen 375 RKRPYVISFVGVNGVGKSTNLAKIAYWL--LQNKFRVLIAACDTFRSGAV--EQLRTHVERLSAL--HGTMVELFEKGYG 448 (587)
T ss_pred cCCCeEEEEEeecCccccchHHHHHHHH--HhCCceEEEEeccchhhhHH--HHHHHHHHHHHHh--ccchhHHHhhhcC
Confidence 4689999999999999999999999877 45666888899999996332 222 111 001000000000
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 281 QSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 281 ~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
......+...++.|.++|+|||+-+|.++...-+++|.-+.+
T Consensus 449 kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k 490 (587)
T KOG0781|consen 449 KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAK 490 (587)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHH
Confidence 112345667888999999999999999999988888877665
No 48
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.43 E-value=7.7e-07 Score=85.08 Aligned_cols=96 Identities=25% Similarity=0.273 Sum_probs=65.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSLLV 292 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~lie 292 (400)
+|+++|.|||||||+|+.|++.+ +...-.+.++..|..+- .+..+ . .+. ...++.++ ..-+..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L--~~~i~~vi~l~kdy~~~------i~~DE--s-lpi--~ke~yres~~ks~~rlld 69 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL--RQEIWRVIHLEKDYLRG------ILWDE--S-LPI--LKEVYRESFLKSVERLLD 69 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH--HHhhhhccccchhhhhh------eeccc--c-cch--HHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998 45555778888754431 01111 0 000 01122222 333444777
Q ss_pred HHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 293 TALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 293 ~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
.|++ .+-||+|+|+--..+|-++.-.+.+.
T Consensus 70 Salk-n~~VIvDdtNYyksmRrqL~ceak~~ 99 (261)
T COG4088 70 SALK-NYLVIVDDTNYYKSMRRQLACEAKER 99 (261)
T ss_pred HHhc-ceEEEEecccHHHHHHHHHHHHHHhc
Confidence 7887 78899999999999999998887763
No 49
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.42 E-value=1.2e-06 Score=81.88 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=62.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc---C-CCC----ChhhHhHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS---K-GHH----DDMLQTAELVHQSS 283 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~---~-G~~----~d~~~aa~~v~~~~ 283 (400)
|.+|++.||+|+||||++.+||.++. ..+..+.+|++|.+|.... ++|.. . +.+ .......
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~--~~~~~v~lis~D~~R~ga~--eQL~~~a~~l~vp~~~~~~~~~~~------- 69 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK--LKGKKVALISADTYRIGAV--EQLKTYAEILGVPFYVARTESDPA------- 69 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESTSSTHHH--HHHHHHHHHHTEEEEESSTTSCHH-------
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh--hccccceeecCCCCCccHH--HHHHHHHHHhccccchhhcchhhH-------
Confidence 88999999999999999999999984 3477899999999995322 33311 1 110 0000011
Q ss_pred HHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 284 TDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 284 ~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..+...++..-.++.|+|+-+|.++.+.-...++..++
T Consensus 70 -~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~ 107 (196)
T PF00448_consen 70 -EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK 107 (196)
T ss_dssp -HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH
Confidence 12233455566788998888888766654444444433
No 50
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.41 E-value=1.8e-06 Score=77.46 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+|+|.|+|||||||+++.|++.+|+ .+++.|+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~-------~~~~~g~ 36 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGF-------THLSTGD 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHH
Confidence 7888999999999999999999865 7888754
No 51
>PRK14531 adenylate kinase; Provisional
Probab=98.40 E-value=1.3e-06 Score=79.88 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC-CccccchHHHHHHhcCCCCCh----hhHhHHHHHHHHHHHH
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA-DAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTDAA 287 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda-DefRe~D~irk~L~~~G~~~d----~~~aa~~v~~~~~~~a 287 (400)
.-|+|.|+|||||||+++.|++.+|+ .+|+. |.+| +.+......+. ....+..+- ..++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~-------~~is~gd~lr------~~~~~~~~~~~~~~~~~~~G~~v~---d~l~ 66 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL-------RHLSTGDLLR------SEVAAGSALGQEAEAVMNRGELVS---DALV 66 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC-------CeEecccHHH------HHHhcCCHHHHHHHHHHHcCCCCC---HHHH
Confidence 35899999999999999999999965 78987 4443 33322100000 000000000 1112
Q ss_pred HHHHHHHHh--CCCcEEEECcCCChHHHHHHHHHHH
Q 015774 288 SSLLVTALN--EGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 288 e~lie~AL~--eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
..++...+. .+..+||||...+....+.+...+.
T Consensus 67 ~~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~ 102 (183)
T PRK14531 67 LAIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLE 102 (183)
T ss_pred HHHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 222222332 3567999999998777766555443
No 52
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.40 E-value=2e-07 Score=78.20 Aligned_cols=33 Identities=27% Similarity=0.528 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+|+|+|+|||||||+++.|++.+|+ .+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~-------~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF-------PVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-------EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-------eEEEecce
Confidence 6899999999999999999999965 78888884
No 53
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.39 E-value=7.7e-07 Score=87.40 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~ 293 (400)
+|+|+|.|||||||+++.|.+.+ ++.+..+++++-|++. +.... ..+. ... ...-....+.+++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~--~~~~~~v~~i~~~~~~--------~~~~~-y~~~-~~E----k~~R~~l~s~v~r 66 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYL--EEKGKEVVIISDDSLG--------IDRND-YADS-KKE----KEARGSLKSAVER 66 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHH--HHTT--EEEE-THHHH---------TTSS-S--G-GGH----HHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH--HhcCCEEEEEcccccc--------cchhh-hhch-hhh----HHHHHHHHHHHHH
Confidence 79999999999999999999987 4445577888755443 11110 0011 111 1122334557777
Q ss_pred HHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 294 ALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 294 AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
++....-||+|+++--.++|-++..+|++.
T Consensus 67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~~ 96 (270)
T PF08433_consen 67 ALSKDTIVILDDNNYIKGMRYELYCLARAY 96 (270)
T ss_dssp HHTT-SEEEE-S---SHHHHHHHHHHHHHT
T ss_pred hhccCeEEEEeCCchHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998874
No 54
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.38 E-value=8.1e-06 Score=84.27 Aligned_cols=103 Identities=14% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH-HHHHHhcC-CCCChhhHhHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV-IYRALSSK-GHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~-irk~L~~~-G~~~d~~~aa~~v~~~~~~~a 287 (400)
..+.+++++|++|+||||++..|+..+ ...+..+.+|++|.+|.... .++..... +.+-...... ..+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp----~dL---- 273 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSP----AEL---- 273 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCH----HHH----
Confidence 468899999999999999999999876 34466788999999996322 11222221 2110000011 111
Q ss_pred HHHHHHHH-hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 288 SSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 288 e~lie~AL-~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
...+..+. ..++++||-+|.++.+.-.+.+....+
T Consensus 274 ~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~ 309 (407)
T PRK12726 274 EEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISA 309 (407)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHH
Confidence 11222232 267888888888775554555554443
No 55
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.37 E-value=1.9e-06 Score=75.93 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|..|+|+|+|||||||+++.|++.+|+ .+++.|.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~-------~~~d~d~~~ 39 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGY-------DFIDTDHLI 39 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence 46789999999999999999999999965 788988765
No 56
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.35 E-value=3.9e-06 Score=80.50 Aligned_cols=106 Identities=18% Similarity=0.235 Sum_probs=64.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----ChhhHhHHHHHHH-H
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQS-S 283 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----~d~~~aa~~v~~~-~ 283 (400)
...+.+|+|+|+||.|||++|+.|..-+.| .|-++-+++..+.| +...+.... ++....+....+. .
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w--~g~~~~vFn~g~yR------R~~~~~~~~~~ff~p~n~~~~~~R~~~a 80 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNW--LGVKTKVFNVGDYR------RKLSGAPQDAEFFDPDNEEAKKLREQIA 80 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHH--TT--EEEEEHHHHH------HHHHSS-S-GGGGSTT-HHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhh--cCCCcceeecccce------ecccccccccccCCCCChHHHHHHHHHH
Confidence 356889999999999999999999999988 35567778765555 444433110 1111222223333 3
Q ss_pred HHHHHHHHHHHH-hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 284 TDAASSLLVTAL-NEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 284 ~~~ae~lie~AL-~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
...++.++.... +.|.--|+|+|+.+...|..+++.+.+
T Consensus 81 ~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~ 120 (222)
T PF01591_consen 81 KEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKE 120 (222)
T ss_dssp HHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455566666666 577788999999999999988887654
No 57
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=5.5e-07 Score=82.94 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=64.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l 290 (400)
.|.+.+|+|++||||||+...+...+. ++.++||+|++- .++++. ++... .-...+.+...
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~-----~~~~~VN~D~iA------~~i~p~----~p~~~----~i~A~r~ai~~ 61 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLL-----PGIVFVNADEIA------AQISPD----NPTSA----AIQAARVAIDR 61 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhc-----CCeEEECHHHHh------hhcCCC----CchHH----HHHHHHHHHHH
Confidence 378999999999999999888666652 478999988765 555543 11111 11234566778
Q ss_pred HHHHHhCCCcEEEECcCCChHHHHHH
Q 015774 291 LVTALNEGRDVIMDGTLSWVPFVEQT 316 (400)
Q Consensus 291 ie~AL~eG~dVIIDgT~~~~~~re~~ 316 (400)
+..+++.|.++.+|+|++.+.+++.+
T Consensus 62 i~~~I~~~~~F~~ETtLS~~s~~~~i 87 (187)
T COG4185 62 IARLIDLGRPFIAETTLSGPSILELI 87 (187)
T ss_pred HHHHHHcCCCcceEEeeccchHHHHH
Confidence 88899999999999999998876544
No 58
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.33 E-value=7.2e-06 Score=74.08 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=52.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHH--H-HHHHHHHHHH
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVH--Q-SSTDAASSLL 291 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~--~-~~~~~ae~li 291 (400)
|+|.|+|||||||+++.|++.+|+ .+|+.|++- ++.+.... ........... . .....+..++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~-------~~i~~~~l~-----~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~ 67 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGL-------PHISTGDLL-----REEIASGT--ELGKKAKEYIDSGKLVPDEIVIKLL 67 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-------eEEECcHHH-----HHHHhcCC--hHHHHHHHHHHcCCccCHHHHHHHH
Confidence 789999999999999999999855 899987653 12222110 00000000000 0 0012233455
Q ss_pred HHHHhC---CCcEEEECcCCChHHHHHHHHH
Q 015774 292 VTALNE---GRDVIMDGTLSWVPFVEQTIAM 319 (400)
Q Consensus 292 e~AL~e---G~dVIIDgT~~~~~~re~~i~~ 319 (400)
...+.+ +..+|+||........+.+...
T Consensus 68 ~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~ 98 (194)
T cd01428 68 KERLKKPDCKKGFILDGFPRTVDQAEALDEL 98 (194)
T ss_pred HHHHhcccccCCEEEeCCCCCHHHHHHHHHH
Confidence 556654 6789999987766555444333
No 59
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.33 E-value=2e-06 Score=80.14 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=51.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCC----hhhHhHHHHHHHHHHHHHHH
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHD----DMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~----d~~~aa~~v~~~~~~~ae~l 290 (400)
|+|.|+|||||||+++.|++.+|+ .+|+.+++- ++.+....... .....+..+- ...+..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~-------~~is~gdll-----r~~~~~~~~~~~~~~~~~~~g~~vp---~~~~~~l 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL-------PHISTGDLL-----RAEIKAGTPLGKKAKEYMEKGELVP---DEIVNQL 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-------CeeehhHHH-----HHhhccccHHHHHHHHHHhCCCCCC---HHHHHHH
Confidence 788999999999999999999955 899875432 23232110000 0000000000 1122334
Q ss_pred HHHHHhC----CCcEEEECcCCChHHHHHHHHH
Q 015774 291 LVTALNE----GRDVIMDGTLSWVPFVEQTIAM 319 (400)
Q Consensus 291 ie~AL~e----G~dVIIDgT~~~~~~re~~i~~ 319 (400)
+...+.+ +..+||||........+.+.+.
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~ 99 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDAL 99 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHH
Confidence 4445544 6789999987776655555443
No 60
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.33 E-value=6.6e-06 Score=74.34 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=48.6
Q ss_pred EcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 015774 218 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNE 297 (400)
Q Consensus 218 ~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~e 297 (400)
.|+|||||||+++.|+..+|. +++++|.+.....+++.+.+.... +... ...+..............
T Consensus 1 ~G~sGsGKSTla~~la~~l~~-------~~~~~d~~~~~~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~~~~~~~ 67 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHA-------AFLDGDFLHPRRNIEKMASGEPLN-DDDR-----KPWLQALNDAAFAMQRTN 67 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCC-------eEEeCccCCchhhhccccCCCCCC-hhhH-----HHHHHHHHHHHHHHHHcC
Confidence 499999999999999999954 899999875322233333222111 1100 011111111122223345
Q ss_pred CCcEEEECcCCChHHHHHHH
Q 015774 298 GRDVIMDGTLSWVPFVEQTI 317 (400)
Q Consensus 298 G~dVIIDgT~~~~~~re~~i 317 (400)
|.+||+ .|+....+++.+.
T Consensus 68 ~~~viv-~s~~~~~~r~~~~ 86 (163)
T PRK11545 68 KVSLIV-CSALKKHYRDLLR 86 (163)
T ss_pred CceEEE-EecchHHHHHHHH
Confidence 666666 8998877765543
No 61
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=2.4e-06 Score=77.67 Aligned_cols=89 Identities=15% Similarity=0.084 Sum_probs=61.2
Q ss_pred EcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 015774 218 GGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNE 297 (400)
Q Consensus 218 ~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~e 297 (400)
.|++||||||++.+||+++|+ .+|++|+|.....+.++-.+. ..+|...+.++ + .+...+......
T Consensus 1 MGVsG~GKStvg~~lA~~lg~-------~fidGDdlHp~aNi~KM~~Gi-PL~DdDR~pWL--~----~l~~~~~~~~~~ 66 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGA-------KFIDGDDLHPPANIEKMSAGI-PLNDDDRWPWL--E----ALGDAAASLAQK 66 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCC-------ceecccccCCHHHHHHHhCCC-CCCcchhhHHH--H----HHHHHHHHhhcC
Confidence 389999999999999999976 899999999766665543332 12233333322 1 111223335567
Q ss_pred CCcEEEECcCCChHHHHHHHHHH
Q 015774 298 GRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 298 G~dVIIDgT~~~~~~re~~i~~a 320 (400)
|.++||-+....+.||+.++.-.
T Consensus 67 ~~~~vi~CSALKr~YRD~LR~~~ 89 (161)
T COG3265 67 NKHVVIACSALKRSYRDLLREAN 89 (161)
T ss_pred CCceEEecHHHHHHHHHHHhccC
Confidence 77899999999999988876544
No 62
>PRK01184 hypothetical protein; Provisional
Probab=98.29 E-value=8.4e-06 Score=73.88 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC-ccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD-AFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD-efR 254 (400)
.+|+|+|+|||||||+++ +++++|+ .++++| .+|
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~-------~~i~~~d~lr 36 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGI-------PVVVMGDVIR 36 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCC-------cEEEhhHHHH
Confidence 489999999999999987 7888855 788864 344
No 63
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=1.2e-05 Score=83.93 Aligned_cols=48 Identities=15% Similarity=0.345 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 258 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~ 258 (400)
..|.++++.|++||||||++..|+..+.. ..+..+.++++|.+|....
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G~~V~Lit~Dt~R~aA~ 268 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFL-HMGKSVSLYTTDNYRIAAI 268 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH-hcCCeEEEecccchhhhHH
Confidence 35789999999999999999999986521 2345788999999996433
No 64
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.28 E-value=1.6e-05 Score=82.59 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=60.9
Q ss_pred hhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEE
Q 015774 138 LMISQVLSVESEKKTKLKDFIMAATRKQRFEKV-TKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLL 216 (400)
Q Consensus 138 ~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v-~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lIL 216 (400)
.|+.+++..+-. ..+++.+... +... ..+ .......+.+.+..... . +. .....|.+|+
T Consensus 186 ~L~~~dV~~~~~------~~ll~~~~~~-~~~~~~~~--~~~~~~~l~~~l~~~l~------~----~~-~~~~~~~vI~ 245 (436)
T PRK11889 186 MLEQNDVEQYFI------HAYAEKLKVK-FENATMIT--EEEVIEYILEDMRSHFN------T----EN-VFEKEVQTIA 245 (436)
T ss_pred HHHHCCCCHHHH------HHHHHHHHhh-hcccccCC--HHHHHHHHHHHHHHHhc------c----cc-ccccCCcEEE
Confidence 778888876655 6666666542 2221 111 12333334444332221 0 10 0134578999
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
++|++|+||||++..||..+ ...+..+.++++|.+|.
T Consensus 246 LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~Ri 282 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRI 282 (436)
T ss_pred EECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcch
Confidence 99999999999999999987 45567888999999983
No 65
>PRK06696 uridine kinase; Validated
Probab=98.27 E-value=2.2e-06 Score=80.74 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=40.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYR 261 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk 261 (400)
...|.+|.|+|+|||||||+|+.|++.++ ..+..+++++.|+|...+..+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~--~~g~~v~~~~~Ddf~~~~~~r~ 69 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIK--KRGRPVIRASIDDFHNPRVIRY 69 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeccccccCCHHHHH
Confidence 45789999999999999999999999983 2234678888999986554433
No 66
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.25 E-value=6.5e-06 Score=76.96 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.|+|.|+|||||||+++.|++.+++ .+|+.+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~-------~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI-------PHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEEECCcc
Confidence 4899999999999999999999965 89997554
No 67
>PRK13946 shikimate kinase; Provisional
Probab=98.24 E-value=6.2e-06 Score=75.54 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=32.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..|+|.|+|||||||+++.|++++|+ .++|+|..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~-------~~id~D~~ 44 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGL-------PFLDADTE 44 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeECcCHH
Confidence 5678999999999999999999999977 69998864
No 68
>PRK06217 hypothetical protein; Validated
Probab=98.24 E-value=2.1e-06 Score=78.29 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.-|+|.|+|||||||+++.|++.+++ .+++.|++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~-------~~~~~D~~~ 36 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI-------PHLDTDDYF 36 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-------cEEEcCcee
Confidence 35899999999999999999999965 699999876
No 69
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.24 E-value=2.5e-06 Score=75.41 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+|.++|+|||||||+++.|++.+|+ .+++.|++
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~-------~~~~~~~~ 34 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSL-------KLISAGDI 34 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-------ceecHHHH
Confidence 7999999999999999999999965 68887643
No 70
>PRK07261 topology modulation protein; Provisional
Probab=98.23 E-value=2.1e-06 Score=78.20 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-|+|.|+|||||||+++.|+..++. .+++.|.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecCCEE
Confidence 3789999999999999999999854 577888775
No 71
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.23 E-value=5.9e-06 Score=71.80 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=29.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
|+|+|+|||||||+++.|++.++| .+++.|.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~-------~~~~~d~~~ 34 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL-------PFVDLDELI 34 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-------CEEEchHHH
Confidence 789999999999999999999977 688988765
No 72
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.21 E-value=6.9e-07 Score=83.71 Aligned_cols=88 Identities=25% Similarity=0.410 Sum_probs=58.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTA 276 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa 276 (400)
.+.+|+|+||+|+||||+.+.|.++.++ +.+|.++.+++.|+|. +.+.. + .+..++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~------~~i~~-~---~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFE------ELIER-D---EFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHH------HHHhc-C---CcEEEE
Confidence 5789999999999999999999998765 4566777888877775 22222 1 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCC
Q 015774 277 ELVHQSSTDAASSLLVTALNEGRDVIMDGTLSW 309 (400)
Q Consensus 277 ~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~ 309 (400)
. +|...+.....-++.++++|.+||+|-..-.
T Consensus 73 ~-~~gnyYGT~~~~ve~~~~~G~~vildId~qG 104 (191)
T COG0194 73 E-YHGNYYGTSREPVEQALAEGKDVILDIDVQG 104 (191)
T ss_pred E-EcCCcccCcHHHHHHHHhcCCeEEEEEehHH
Confidence 1 1122222233356679999999999976543
No 73
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.20 E-value=2e-05 Score=77.48 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
..|.+|+++|++|+||||++..|+..+-....+..+.+|+.|.+|.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4678999999999999999999998872100125789999999984
No 74
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.18 E-value=3.7e-06 Score=82.30 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=56.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.|||+.|++++.++.++..+..+++. .+.|.++++.|+||+||||++..+++.++
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~lll~G~~G~GKT~la~~l~~~~~- 68 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK----------------------GRIPNMLLHSPSPGTGKTTVAKALCNEVG- 68 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc----------------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC-
Confidence 4789999999999999998888877764 45688999999999999999999999874
Q ss_pred cCCCCCeEEEeCCc
Q 015774 239 SGAATNAVVVEADA 252 (400)
Q Consensus 239 ~~~~~~avvIdaDe 252 (400)
.+...+++.+
T Consensus 69 ----~~~~~i~~~~ 78 (316)
T PHA02544 69 ----AEVLFVNGSD 78 (316)
T ss_pred ----ccceEeccCc
Confidence 3667777665
No 75
>PRK04182 cytidylate kinase; Provisional
Probab=98.18 E-value=3.5e-06 Score=74.95 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+|+|+|+|||||||+++.|++++|+ .+++.|++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~-------~~id~~~~ 34 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL-------KHVSAGEI 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-------cEecHHHH
Confidence 7899999999999999999999966 68886543
No 76
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.18 E-value=4.4e-06 Score=74.97 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=59.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH-HHHHHhcC-CCCC-hhhHhHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV-IYRALSSK-GHHD-DMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~-irk~L~~~-G~~~-d~~~aa~~v~~~~~~~ae~l 290 (400)
++++.|+||+||||++..++..+ .+.+..+.+++.|.++.... ....+... +.+- ...... .........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~--~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 74 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL--KKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGK-----DPVSIAKRA 74 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCC-----CHHHHHHHH
Confidence 68899999999999999999887 34456788999999884322 11111211 1100 000000 011122344
Q ss_pred HHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774 291 LVTALNEGRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 291 ie~AL~eG~dVIIDgT~~~~~~re~~i~~a 320 (400)
+..+...++++||.+|.+...+-...+...
T Consensus 75 ~~~~~~~~~d~viiDt~g~~~~~~~~l~~l 104 (173)
T cd03115 75 IEHAREENFDVVIVDTAGRLQIDENLMEEL 104 (173)
T ss_pred HHHHHhCCCCEEEEECcccchhhHHHHHHH
Confidence 555777899888888877654433444433
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=7.5e-06 Score=83.99 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=54.0
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..+-+.|||++|+++++++.++..+..+++. .+-|+.+++.|+||+||||+|..+|+.
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~----------------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRM----------------------GRVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHh----------------------CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999988877765 467889999999999999999999999
Q ss_pred ccc
Q 015774 236 SFW 238 (400)
Q Consensus 236 lg~ 238 (400)
+.+
T Consensus 62 l~c 64 (397)
T PRK14955 62 VNC 64 (397)
T ss_pred hcC
Confidence 976
No 78
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.17 E-value=5.5e-06 Score=71.15 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|+|+|+|||||||+|+.|++.+++ .+++.|.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~-------~~~~~~~i~ 34 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL-------PYLDTGGIR 34 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC-------ceeccccCC
Confidence 5899999999999999999999955 688888654
No 79
>PLN02674 adenylate kinase
Probab=98.16 E-value=7.3e-06 Score=79.62 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=56.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC---CC-CChhhHhHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK---GH-HDDMLQTAELVHQSSTD 285 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~---G~-~~d~~~aa~~v~~~~~~ 285 (400)
+.+..|++.|+|||||||+++.|++.+++ .+|+++++- +..+... |. .......+..+-+ .
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~-------~his~Gdll-----R~~i~~~s~~g~~i~~~~~~G~lvpd---~ 93 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCL-------CHLATGDML-----RAAVAAKTPLGIKAKEAMDKGELVSD---D 93 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCC-------cEEchhHHH-----HHHHhccChhhHHHHHHHHcCCccCH---H
Confidence 33456889999999999999999999966 899876543 2333221 00 0000011111111 2
Q ss_pred HHHHHHHHHHhC---CCcEEEECcCCChHHHHHHHHHH
Q 015774 286 AASSLLVTALNE---GRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 286 ~ae~lie~AL~e---G~dVIIDgT~~~~~~re~~i~~a 320 (400)
.+..++..++.+ +..+|+||.-.+....+.+-.+.
T Consensus 94 iv~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l 131 (244)
T PLN02674 94 LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEML 131 (244)
T ss_pred HHHHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHH
Confidence 223344445533 46799999988877666554443
No 80
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.16 E-value=1.6e-05 Score=80.76 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=68.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc-----c------hHHHHH----Hhc--------C--CC
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE-----T------DVIYRA----LSS--------K--GH 268 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe-----~------D~irk~----L~~--------~--G~ 268 (400)
+++++|+|||||||+++.|+..+.. ..+..+.+++.|+|.. . ..+|+. |.. . |.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~-~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRR-ERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh-ccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4689999999999999999987731 3455789999999872 1 111111 111 0 11
Q ss_pred -CCh-hhH----hHHHHH---H---------HHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 269 -HDD-MLQ----TAELVH---Q---------SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 269 -~~d-~~~----aa~~v~---~---------~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
... +.. ....+. + ........++..+++.+.-||+|++|....+|.++..+++..
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~ 152 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKY 152 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHh
Confidence 000 000 000000 0 012234556777788888899999999999999999998863
No 81
>PRK14530 adenylate kinase; Provisional
Probab=98.16 E-value=1.4e-05 Score=74.73 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=50.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCC-CCC-hhhHhHHHHHH---HHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG-HHD-DMLQTAELVHQ---SSTDAAS 288 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G-~~~-d~~~aa~~v~~---~~~~~ae 288 (400)
.|+|.|+|||||||+++.|++.+|+ .+|+.|++-. ..+.... ... ........... .......
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~-------~~i~~g~~lr-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~ 72 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGV-------EHVTTGDALR-----ANKQMDISDMDTEYDTPGEYMDAGELVPDAVVN 72 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------eEEeccHHHH-----HhccCCcccccchHHHHHHHHHcCCCCCHHHHH
Confidence 4788999999999999999999965 7888766532 2220000 000 00000000000 0011334
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHH
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVE 314 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re 314 (400)
.++...+.+...+|+||........+
T Consensus 73 ~~l~~~l~~~~~~IldG~pr~~~q~~ 98 (215)
T PRK14530 73 EIVEEALSDADGFVLDGYPRNLEQAE 98 (215)
T ss_pred HHHHHHHhcCCCEEEcCCCCCHHHHH
Confidence 45566666677899999656554443
No 82
>PRK04040 adenylate kinase; Provisional
Probab=98.15 E-value=7.6e-06 Score=76.02 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=31.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
|.+|+++|.|||||||+++.|++.+. .+..+++.|++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-----~~~~~~~~g~~~ 39 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-----EDYKIVNFGDVM 39 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-----cCCeEEecchHH
Confidence 67999999999999999999999982 134677776653
No 83
>PLN03025 replication factor C subunit; Provisional
Probab=98.15 E-value=5.5e-06 Score=82.18 Aligned_cols=80 Identities=15% Similarity=0.273 Sum_probs=54.4
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.|||++|++++++..+...+..+++. ...|. +++.|+||+||||+|..+++.+..
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~----------------------~~~~~-lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARD----------------------GNMPN-LILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhc----------------------CCCce-EEEECCCCCCHHHHHHHHHHHHhc
Confidence 4789999999999999877766555443 33465 567999999999999999998732
Q ss_pred cCCCCCeEEEeCCccccchHHHH
Q 015774 239 SGAATNAVVVEADAFKETDVIYR 261 (400)
Q Consensus 239 ~~~~~~avvIdaDefRe~D~irk 261 (400)
+.....++-+++-+.+..+.++.
T Consensus 61 ~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 61 PNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred ccCccceeeecccccccHHHHHH
Confidence 11112344555544443444443
No 84
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.14 E-value=3.4e-05 Score=84.26 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=65.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC-ChhhHhHHHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH-DDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~-~d~~~aa~~v~~~~~~~ae~ 289 (400)
...+++|.|.||+||||+++.|++.++|. +-++.+++.|..+ +.+...+.. .++......-.+.....+..
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~--~~~~~~~~~~~~r------r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d 285 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWN--GLQSRIFIHQAYR------RRLERRGGAVSSPTGAAEVEFRIAKAIAHD 285 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhc--CCCcEEEccchhH------hhhccCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999882 3334444444444 455422111 01101111112223333334
Q ss_pred HHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
+....++.|..+|+|+|+....-+..+++++++
T Consensus 286 ~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~ 318 (664)
T PTZ00322 286 MTTFICKTDGVAVLDGTNTTHARRMALLRAIRE 318 (664)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455566679999999999998777777777764
No 85
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.13 E-value=8.5e-06 Score=75.39 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-|++.|+|||||||+|+.|++.+++ .+||+|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i-------~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL-------PHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-------cEEcHhHHh
Confidence 3789999999999999999999855 899966544
No 86
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=8.8e-06 Score=86.46 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=53.8
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.....|||++|+++++++.+.+.+..+++. .+-|+.+|+.|++|+||||+|+.+++.+
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~----------------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQ----------------------QYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHh----------------------CCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 356889999999999999999988888865 4578899999999999999999999999
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
.+
T Consensus 63 ~c 64 (509)
T PRK14958 63 NC 64 (509)
T ss_pred cC
Confidence 76
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.13 E-value=2e-05 Score=76.12 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=53.8
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..-+.+||++|++.++.+.++..+.-+++..+. .....--+++.||||.||||+|..+|+++
T Consensus 13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~------------------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKK------------------RGEALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHC------------------TTS---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHh------------------cCCCcceEEEECCCccchhHHHHHHHhcc
Confidence 456789999999999999999988888876322 02233457899999999999999999999
Q ss_pred cccCCCCCeEEEeCCccccc
Q 015774 237 FWSGAATNAVVVEADAFKET 256 (400)
Q Consensus 237 g~~~~~~~avvIdaDefRe~ 256 (400)
+ .+...+++..+...
T Consensus 75 ~-----~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 75 G-----VNFKITSGPAIEKA 89 (233)
T ss_dssp T-------EEEEECCC--SC
T ss_pred C-----CCeEeccchhhhhH
Confidence 5 37778887666543
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.3e-06 Score=84.70 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=51.9
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+.|||++|+++++++.+.+.+...+.. .+-|+.+++.|+||+||||+|+.+++.+
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~----------------------~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSL----------------------GRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHc----------------------CCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999887766654 4568899999999999999999999998
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
.+
T Consensus 63 ~c 64 (363)
T PRK14961 63 NC 64 (363)
T ss_pred cC
Confidence 54
No 89
>PRK08118 topology modulation protein; Reviewed
Probab=98.11 E-value=5.1e-06 Score=75.55 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-|+|.|+|||||||+|+.|++.++. .+++.|.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~-------~~~~lD~l~ 36 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI-------PVHHLDALF 36 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------Cceecchhh
Confidence 4899999999999999999999955 677777553
No 90
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=1e-05 Score=88.35 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=53.0
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+...|||++|+++++.+.+++.+..+++. .+.|..+|++|++|+||||+|+.+|+.++
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~~----------------------grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALER----------------------GRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998888775 45688999999999999999999999987
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 63 C 63 (702)
T PRK14960 63 C 63 (702)
T ss_pred C
Confidence 6
No 91
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.09 E-value=3.1e-05 Score=71.08 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=35.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
..++++.|+|||||||+++.|+..++. .++++|.+.....+++..
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~ 47 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMS 47 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHh
Confidence 458899999999999999999999843 799999987433333433
No 92
>PRK13947 shikimate kinase; Provisional
Probab=98.09 E-value=1.6e-05 Score=70.81 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=30.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
|+|.|+|||||||+++.||+.+|| .++|.|.+.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~-------~~id~d~~~ 36 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSF-------GFIDTDKEI 36 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-------CEEECchhh
Confidence 899999999999999999999977 689999865
No 93
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.08 E-value=1.6e-05 Score=76.31 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=32.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|.-|+|.|+|||||||+++.|++.+|+ .+|+.|++-
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~-------~~is~gdll 41 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENL-------KHINMGNIL 41 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC-------cEEECChHH
Confidence 3455999999999999999999999965 899988764
No 94
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.06 E-value=9.2e-05 Score=77.11 Aligned_cols=136 Identities=14% Similarity=0.081 Sum_probs=78.1
Q ss_pred cchHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHH
Q 015774 79 CPQLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFI 158 (400)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~ 158 (400)
-+.+..|..++-.-.+-+.+ .+... .........+.++++ .|+.++++.+.. ..+
T Consensus 129 ~~~~~~l~~el~~lk~~l~~----~~~~~-~~~~~~~~~~~~~~~--------------~L~~~gv~~~~~------~~l 183 (424)
T PRK05703 129 QKELDELRDELKELKNLLED----QLSGL-RQVERIPPEFAELYK--------------RLKRSGLSPEIA------EKL 183 (424)
T ss_pred hHHHHHHHHHHHHHHHHHHH----HHhhh-cccccchHHHHHHHH--------------HHHHCCCCHHHH------HHH
Confidence 35666666665443333322 22221 111234566678888 899999998877 667
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
++.+++.- ..... .+...+..++.+ +.. +.. + ++ ...+.+|++.|++|+||||++..||..+-.
T Consensus 184 ~~~~~~~~-~~~~~--~~~~~~~~~L~~---~l~-----~~~-~-~~---~~~~~~i~~vGptGvGKTTt~~kLA~~~~~ 247 (424)
T PRK05703 184 LKLLLEHM-PPRER--TAWRYLLELLAN---MIP-----VRV-E-DI---LKQGGVVALVGPTGVGKTTTLAKLAARYAL 247 (424)
T ss_pred HHHHHHHh-hhhHH--HHHHHHHHHHHH---HhC-----ccc-c-cc---ccCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77665532 11110 233333333333 221 010 0 01 123458899999999999999999987620
Q ss_pred cCCCCCeEEEeCCcccc
Q 015774 239 SGAATNAVVVEADAFKE 255 (400)
Q Consensus 239 ~~~~~~avvIdaDefRe 255 (400)
...+..+.+|+.|.+|.
T Consensus 248 ~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 248 LYGKKKVALITLDTYRI 264 (424)
T ss_pred hcCCCeEEEEECCccHH
Confidence 02346789999999984
No 95
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=1.5e-05 Score=84.71 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=51.8
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..|||+.|+++++++.++..+.+++.. .+-|+++|+.|+||+||||+|+.+++.+.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~----------------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQ----------------------GRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999998888877765 35688999999999999999999999985
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 62 c 62 (504)
T PRK14963 62 C 62 (504)
T ss_pred c
Confidence 4
No 96
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.04 E-value=9.3e-06 Score=74.96 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefR 254 (400)
+|.++|+|||||||+++.||+.+|+ .+++ ++.||
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl-------~~vsaG~iFR 36 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL-------KLVSAGTIFR 36 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC-------ceeeccHHHH
Confidence 6889999999999999999999976 5666 55565
No 97
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=1.6e-05 Score=89.13 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=52.6
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-+.|||++|+++++++.+.+.|...+.. .+-|+.+|++|+||+||||+|+.|++.++
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~----------------------~rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQ----------------------QRLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 46789999999999999999988777665 45689999999999999999999999997
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (944)
T PRK14949 64 C 64 (944)
T ss_pred C
Confidence 6
No 98
>PRK03839 putative kinase; Provisional
Probab=98.02 E-value=4.3e-06 Score=75.65 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|+|.|+|||||||+++.|++.+++ .+++.|++-
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~-------~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY-------EYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEEehhhhh
Confidence 5899999999999999999999965 789988654
No 99
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=1.1e-05 Score=88.13 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=68.7
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH--H-------hhCcCcccccccccccc--CCCCEEEEEEcCCCCcH
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAI--R-------REGESHCTDVMVPAALS--ERSPVLLLMGGGMGAGK 225 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i--~-------~~~~~~~~~v~~pl~~~--~~~P~lILL~G~PGSGK 225 (400)
.=++.||++.|.+...|+.+.|.+-.|+.-|-.- + .+...-..++|.....+ .+...+.||+|+||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 5689999999999999999999999999876432 1 01112223444333333 34456999999999999
Q ss_pred HHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 226 STVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 226 STlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
||+|.-+|++-|+ .++-|++.+=|
T Consensus 340 TTLAHViAkqaGY-----sVvEINASDeR 363 (877)
T KOG1969|consen 340 TTLAHVIAKQAGY-----SVVEINASDER 363 (877)
T ss_pred hHHHHHHHHhcCc-----eEEEecccccc
Confidence 9999999999876 66777766555
No 100
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=1.8e-05 Score=83.88 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=50.0
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-..|||+.|+++++++.+.+.+.+.+.. .+-|+.+|++|++|+||||+|+.+|+.+.+
T Consensus 4 a~KyRP~~f~dliGQe~vv~~L~~a~~~----------------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTL----------------------NKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 4689999999999999998888766554 456889999999999999999999997643
No 101
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.00 E-value=2.9e-05 Score=73.46 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE-Ee
Q 015774 171 TKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-VE 249 (400)
Q Consensus 171 ~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv-Id 249 (400)
-.|+.+.+.+..+++.+..... ....|.++.+.|+|||||||+++.|+..+. ..+..+.+ |+
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~ 69 (229)
T PRK09270 7 YRDEEIEAVHKPLLRRLAALQA---------------EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVP 69 (229)
T ss_pred cChHhHHHHHHHHHHHHHHHHh---------------cCCCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEe
Confidence 3577888888888888666431 245789999999999999999999999883 33444455 88
Q ss_pred CCccccch
Q 015774 250 ADAFKETD 257 (400)
Q Consensus 250 aDefRe~D 257 (400)
.|+|...+
T Consensus 70 ~D~~~~~~ 77 (229)
T PRK09270 70 MDGFHLDN 77 (229)
T ss_pred cccccCCH
Confidence 88887543
No 102
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=2.2e-05 Score=86.87 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=53.3
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+-+.||+++|+++++++.+++.+..+++. .+-++.+|++|++|+||||+++.|++.+
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~----------------------gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDG----------------------GRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999988888765 4568899999999999999999999998
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
++
T Consensus 63 nC 64 (830)
T PRK07003 63 NC 64 (830)
T ss_pred cC
Confidence 76
No 103
>PRK00625 shikimate kinase; Provisional
Probab=97.99 E-value=2.5e-05 Score=71.85 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|+|+|.|||||||+++.|++++++ .++|.|.+-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~-------~~id~D~~I 35 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL-------PFFDTDDLI 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------CEEEhhHHH
Confidence 4899999999999999999999966 799988754
No 104
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.99 E-value=7.6e-05 Score=67.86 Aligned_cols=92 Identities=18% Similarity=0.155 Sum_probs=49.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc-cchHHHHHHhcCC-CCChhhHhHHHHHHHH-HHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKG-HHDDMLQTAELVHQSS-TDAAS 288 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR-e~D~irk~L~~~G-~~~d~~~aa~~v~~~~-~~~ae 288 (400)
+.+|++.|++||||||+++.|++.++. .|..++++....=. -...+++.+.... ...++ .+....+... .....
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~--~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~l~~~~r~~~~~ 79 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE--NGYDVLFTREPGGTPIGEKIRELLLNENDEPLTD-KAEALLFAADRHEHLE 79 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCH-HHHHHHHHHHHHHHHH
Confidence 578999999999999999999999842 23344443221100 0112223222211 00111 1111111111 23344
Q ss_pred HHHHHHHhCCCcEEEECc
Q 015774 289 SLLVTALNEGRDVIMDGT 306 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT 306 (400)
..+..++..|..||+|-.
T Consensus 80 ~~i~~~l~~~~~VI~DR~ 97 (195)
T TIGR00041 80 DKIKPALAEGKLVISDRY 97 (195)
T ss_pred HHHHHHHhCCCEEEECCc
Confidence 567778889999999954
No 105
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.97 E-value=2.4e-06 Score=79.22 Aligned_cols=85 Identities=26% Similarity=0.470 Sum_probs=50.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc-c--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF-W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQT 275 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg-~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~a 275 (400)
.|.+|+|+|||||||||+++.|.+++. . +.+|.++.+++.++|. ..+... . +..+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~------~~i~~~-~---f~e~ 72 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFK------KGIADG-E---FLEW 72 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHH------HHHHcC-C---eEEE
Confidence 688999999999999999999988762 1 1223445566555543 222221 1 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECc
Q 015774 276 AELVHQSSTDAASSLLVTALNEGRDVIMDGT 306 (400)
Q Consensus 276 a~~v~~~~~~~ae~lie~AL~eG~dVIIDgT 306 (400)
+ .++...+....+-++..+++|..+|+|..
T Consensus 73 ~-~~~g~~YGt~~~~i~~~~~~g~~~i~d~~ 102 (186)
T PRK14737 73 A-EVHDNYYGTPKAFIEDAFKEGRSAIMDID 102 (186)
T ss_pred E-EECCeeecCcHHHHHHHHHcCCeEEEEcC
Confidence 0 01111222333356678999999999974
No 106
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.96 E-value=2.7e-05 Score=72.16 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
-|+|+|+|||||||+.+.||+.++. .++|.|..-+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~-------~F~D~D~~Ie 38 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNL-------PFIDTDQEIE 38 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCC-------CcccchHHHH
Confidence 4789999999999999999999954 7999997663
No 107
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=3e-05 Score=83.82 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=52.2
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-..|||++|+++++++.+++.+...++. .+-|+.+|+.|++|+||||+|+.|++.+.+
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~----------------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDA----------------------GRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3689999999999999999998888765 467899999999999999999999999876
No 108
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=3.3e-05 Score=84.31 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=53.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..||+++|+++++++.+++.+...++. .+-|+.+|++|++|+||||+++.|++.+.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~----------------------gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQ----------------------QRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHh----------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999988888776 45688999999999999999999999997
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 C 64 (700)
T PRK12323 64 C 64 (700)
T ss_pred C
Confidence 6
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.94 E-value=1.9e-05 Score=77.34 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=52.2
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.|||+.|++++++..+.+.+..+++. ...|. +++.|+||+||||+++.+++.+..
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~----------------------~~~~~-lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDS----------------------PNLPH-LLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhC----------------------CCCce-EEEECCCCCCHHHHHHHHHHHhcC
Confidence 4689999999999988877776665542 22344 679999999999999999998742
Q ss_pred cCCCCCeEEEeCCcc
Q 015774 239 SGAATNAVVVEADAF 253 (400)
Q Consensus 239 ~~~~~~avvIdaDef 253 (400)
.....+.+.++..++
T Consensus 63 ~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 63 DPWENNFTEFNVADF 77 (337)
T ss_pred cccccceEEechhhh
Confidence 111234567776554
No 110
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=1.6e-05 Score=83.95 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=51.9
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.-..|||+.|+++++.+.+...+..+++. .+-|..+++.|++|+||||+|+.+|+.++
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~----------------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKS----------------------GKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46789999999999999998888777765 44678999999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 66 c 66 (484)
T PRK14956 66 C 66 (484)
T ss_pred c
Confidence 5
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=1.5e-05 Score=83.99 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=48.9
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-+.|||+.|+++++.+.+...+...+.. .+-|..+++.||||+||||+|+.+++.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~----------------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKK----------------------NSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999887766655543 446788999999999999999999999854
No 112
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.92 E-value=1.8e-05 Score=72.37 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.+++|.|+|||||||+++.|+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5789999999999999999998874
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=3.4e-05 Score=83.89 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=53.1
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+...|||++|+++++++.+.+.+..+++. .+-|+.+|++|++|+||||+|+.|++.+
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~----------------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQ----------------------QRLHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999888887765 4578999999999999999999999998
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
.+
T Consensus 63 nC 64 (618)
T PRK14951 63 NC 64 (618)
T ss_pred cC
Confidence 65
No 114
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.91 E-value=4.4e-05 Score=68.24 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|+|+|+|||||||+++.|++++|+ .++|.|.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~-------~~~d~D~~~ 37 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGY-------RFVDTDQWL 37 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-------CEEEccHHH
Confidence 4788999999999999999999976 789988765
No 115
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.90 E-value=3.9e-05 Score=76.84 Aligned_cols=81 Identities=23% Similarity=0.429 Sum_probs=53.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh------------cCCCC--C--hh--
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS------------SKGHH--D--DM-- 272 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~------------~~G~~--~--d~-- 272 (400)
.|.+|+++||+||||||+|..|++.+ ++.+|++|.+- +|+.+. +..|+ + ++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~-------~~~iis~Ds~Q----vy~~l~i~Takp~~~E~~gv~hhlid~~~~~~ 71 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRL-------NGEIISADSMQ----VYRGMDIGTAKPTAEERAGVPHHLIDILDPTE 71 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhC-------CCcEEeccccc----eeecccccCCCCCHHHHcCccEEeecccChhh
Confidence 46799999999999999999999998 44789999853 222221 11010 0 11
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECc
Q 015774 273 LQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 306 (400)
Q Consensus 273 ~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT 306 (400)
.+.. ......+...++.+++.|..+||+|.
T Consensus 72 ~~s~----~~f~~~a~~~i~~i~~~gk~pIlvGG 101 (307)
T PRK00091 72 SYSV----ADFQRDALAAIADILARGKLPILVGG 101 (307)
T ss_pred cccH----HHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 1111 22244567788889999999888753
No 116
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.90 E-value=5.2e-06 Score=77.67 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=24.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
...|.+|+|+|+|||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 467899999999999999999999864
No 117
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.90 E-value=5.2e-05 Score=75.06 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=50.8
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+.+||+.|+++++++.+...+.+++.. .+.|..+|+.|+||+||||+++.+++.+.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~----------------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN----------------------GRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999998887776654 34678999999999999999999999975
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 62 ~ 62 (355)
T TIGR02397 62 C 62 (355)
T ss_pred C
Confidence 4
No 118
>PRK08356 hypothetical protein; Provisional
Probab=97.89 E-value=0.00012 Score=67.66 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=26.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.+|+++|+|||||||+++.|. ++|+ .+|+..+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~-------~~is~~~ 37 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGF-------CRVSCSD 37 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCC-------cEEeCCC
Confidence 4579999999999999999996 4654 4666554
No 119
>PRK02496 adk adenylate kinase; Provisional
Probab=97.89 E-value=7.6e-05 Score=67.72 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-|+|.|+|||||||+++.|++.+++ .+++.|++
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~-------~~i~~~~~ 35 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI-------PHISTGDI 35 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEEEhHHH
Confidence 4788999999999999999999855 78887544
No 120
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=2.1e-05 Score=83.84 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=52.8
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+...|||+.|+++++++.+.+.+..+++. .+-|+.+|+.|+||+||||+|+.+++.+.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~----------------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQ----------------------QRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc----------------------CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56789999999999999999988888775 45688999999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (527)
T PRK14969 64 C 64 (527)
T ss_pred C
Confidence 5
No 121
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.88 E-value=0.00013 Score=66.47 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=31.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+..|++.|+|||||||+++.|+..+++ .+++.|...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~-------~~vd~D~~i 39 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-------EFYDSDQEI 39 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCC-------cEEECCchH
Confidence 456999999999999999999999855 789999754
No 122
>PRK06547 hypothetical protein; Provisional
Probab=97.87 E-value=1.4e-05 Score=73.30 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=34.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
...|.+|++.|+|||||||+++.|++.++ +.+++.|+|.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~-------~~~~~~d~~~ 50 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG-------FQLVHLDDLY 50 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC-------CCeeccccee
Confidence 46788999999999999999999999984 4788888876
No 123
>PRK14526 adenylate kinase; Provisional
Probab=97.87 E-value=8.5e-05 Score=70.39 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
|+|.|+|||||||+++.|++.+++ .+++++++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~-------~~is~G~l 34 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNY-------YHISTGDL 34 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-------ceeecChH
Confidence 678999999999999999999865 77876554
No 124
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.87 E-value=0.00017 Score=63.57 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=25.4
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
|.|+|||||||+++.|++++|+ ++|+..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~-------~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL-------VHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS-------EEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc-------ceechHH
Confidence 5799999999999999999965 8998544
No 125
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=5.3e-05 Score=81.42 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=52.0
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..|||++|+++++.+.+++.+..++.. .+.|+.+|++|++|+||||+|+.+++.+.
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~----------------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQ----------------------GKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34789999999999999999988888775 35688999999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (559)
T PRK05563 64 C 64 (559)
T ss_pred C
Confidence 5
No 126
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=5.8e-05 Score=81.32 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=52.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..|||++|+++++.+.+++.+...++. .+-|+.+|+.|++|+||||+|+.|++.+.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~----------------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDT----------------------GRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999888877765 45688999999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (576)
T PRK14965 64 C 64 (576)
T ss_pred C
Confidence 5
No 127
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=2.8e-05 Score=83.46 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+.+.|||+.|+++++++.+...+...++. .+.|..+|+.|++|+||||+|+.+++.+.
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~----------------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALET----------------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999998887776654 45678899999999999999999999886
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (546)
T PRK14957 64 C 64 (546)
T ss_pred C
Confidence 4
No 128
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.84 E-value=0.00016 Score=64.75 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI 248 (400)
+|.+.|++||||||+++.|++.+ ...+..++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l--~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL--EARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEE
Confidence 78999999999999999999998 2333455444
No 129
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=5.5e-05 Score=82.61 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=52.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..|||++|+++++.+.+...+...++. .+-|+.+|+.|++|+||||+|+.+++.++
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~~----------------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALDL----------------------GRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 56789999999999999999887776665 45688999999999999999999999997
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (647)
T PRK07994 64 C 64 (647)
T ss_pred h
Confidence 6
No 130
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.84 E-value=0.00016 Score=65.80 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=47.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC--CccccchHHHHHHhc-CCCCChhhHhHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA--DAFKETDVIYRALSS-KGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda--DefRe~D~irk~L~~-~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
+.+|.+.|++||||||+++.|++.+. ..+.++++... +.. ....+++.+.. ....... ..+......-+....
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~--~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~ 78 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLE--QQGRDVVFTREPGGTP-LGEKLRELLLDPNEEMDDK-TELLLFYAARAQHLE 78 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH--HcCCceeEeeCCCCCh-HHHHHHHHHhccccCCCHH-HHHHHHHHHHHHHHH
Confidence 57999999999999999999999873 23334333321 110 01122233321 0111111 111111111133334
Q ss_pred HHHHHHHhCCCcEEEE
Q 015774 289 SLLVTALNEGRDVIMD 304 (400)
Q Consensus 289 ~lie~AL~eG~dVIID 304 (400)
..+..++..|..||+|
T Consensus 79 ~~i~~~l~~g~~vi~D 94 (205)
T PRK00698 79 EVIKPALARGKWVISD 94 (205)
T ss_pred HHHHHHHHCCCEEEEC
Confidence 4566788899999999
No 131
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.83 E-value=2.8e-05 Score=72.12 Aligned_cols=41 Identities=29% Similarity=0.562 Sum_probs=36.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|.+|.|+|+|||||||+++.|+..++ +.++.+++.|.|.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~----~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG----DESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC----CCceEEEeCCccc
Confidence 4789999999999999999999999983 3467889999885
No 132
>PRK07667 uridine kinase; Provisional
Probab=97.83 E-value=2.5e-05 Score=72.23 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+.+|.|+|+|||||||++..|++.+ ...+.++.+++.|+|-
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l--~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENM--KQEGIPFHIFHIDDYI 57 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEEcCccc
Confidence 456899999999999999999999988 3445678899999975
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=6.9e-05 Score=81.57 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=52.9
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+-..|||+.|+++++++.++..|...+.. .+-|+.+|+.|++|+||||+|..+|+.+
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~----------------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRM----------------------DRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999888776654 4678899999999999999999999999
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
.+
T Consensus 63 ~c 64 (620)
T PRK14954 63 NC 64 (620)
T ss_pred CC
Confidence 76
No 134
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.82 E-value=6.8e-05 Score=74.63 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=55.8
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-..+||.+|++.++....+..+..++...+. ....|..+++.|+||+||||+|+.+++.+++
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~------------------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKK------------------RGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh------------------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 4678999999999999999998888876322 0234456789999999999999999999965
Q ss_pred cCCCCCeEEEeCCcc
Q 015774 239 SGAATNAVVVEADAF 253 (400)
Q Consensus 239 ~~~~~~avvIdaDef 253 (400)
+...+++..+
T Consensus 78 -----~~~~~~~~~~ 87 (328)
T PRK00080 78 -----NIRITSGPAL 87 (328)
T ss_pred -----CeEEEecccc
Confidence 4555554433
No 135
>PRK08233 hypothetical protein; Provisional
Probab=97.80 E-value=2.4e-05 Score=69.84 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.+.+|.++|+|||||||++..|++.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999999999999999999999984
No 136
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=9.7e-05 Score=77.44 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..+-+.|||++|+++++++.+...+..++.. .+-|..+|+.|+||+||||+|+.+++.
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~----------------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRF----------------------NRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567889999999999999988777666654 356889999999999999999999998
Q ss_pred ccc
Q 015774 236 SFW 238 (400)
Q Consensus 236 lg~ 238 (400)
+.+
T Consensus 63 l~c 65 (451)
T PRK06305 63 LNC 65 (451)
T ss_pred hcC
Confidence 854
No 137
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=3.6e-05 Score=84.44 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=53.3
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+...|||++|+++++.+.+++.+..+++. .+-|+.+|++|++|+||||+|+.|++.+
T Consensus 5 vLarKYRP~tFddIIGQe~vv~~L~~ai~~----------------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDE----------------------GRLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred hHHHHhCCCCHHHHcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 356789999999999999999988888775 4568899999999999999999999998
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
.+
T Consensus 63 nC 64 (709)
T PRK08691 63 NC 64 (709)
T ss_pred cc
Confidence 65
No 138
>PRK06761 hypothetical protein; Provisional
Probab=97.79 E-value=0.00017 Score=71.56 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=61.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeE-EEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV-VVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~av-vIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l 290 (400)
+.+|+|+|+|||||||+++.|++.+.. .+-++. ..++|.+...+ +.+....... .-...+ ......+..+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~--~g~~v~~~~~~~~~~p~d-----~~~~~~~~~e-er~~~l-~~~~~f~~~l 73 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ--NGIEVELYLEGNLDHPAD-----YDGVACFTKE-EFDRLL-SNYPDFKEVL 73 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc--CceEEEEEecCCCCCchh-----hccccCCCHH-HHHHHH-HhhhHHHHHH
Confidence 358999999999999999999999842 233333 34555554322 2221111111 111111 2223344567
Q ss_pred HHHHHhCCCcEEEECcCCChHHHHHHHH
Q 015774 291 LVTALNEGRDVIMDGTLSWVPFVEQTIA 318 (400)
Q Consensus 291 ie~AL~eG~dVIIDgT~~~~~~re~~i~ 318 (400)
.+.++..|.+||+-..-....+++.+.+
T Consensus 74 ~~~~~~~g~~~i~~~~~l~~~yr~~~~~ 101 (282)
T PRK06761 74 LKNVLKKGDYYLLPYRKIKNEFGDQFSD 101 (282)
T ss_pred HHHHHHcCCeEEEEehhhhHHHhhhhhh
Confidence 8889999999999999888887776653
No 139
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=9.6e-05 Score=79.72 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=51.7
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+.|||+.|+++++++.++..+..++.. .+.+..+|+.|++|+||||+++.+++.+.
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~----------------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAE----------------------GRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHh----------------------CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35889999999999999999888777765 34678999999999999999999999885
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (585)
T PRK14950 64 C 64 (585)
T ss_pred C
Confidence 4
No 140
>PRK13973 thymidylate kinase; Provisional
Probab=97.78 E-value=0.00022 Score=67.04 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=54.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCccccchHHHHHHhcCC-CCChhhHhHHHHHHHH-HHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKG-HHDDMLQTAELVHQSS-TDAAS 288 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDefRe~D~irk~L~~~G-~~~d~~~aa~~v~~~~-~~~ae 288 (400)
+.+|.+-|++||||||.++.|++.+ ...+..++.. .++.-.....+++.+.... ..-++ .+....+... .....
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l--~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~-~~~~ll~~a~r~~~~~ 79 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERL--RAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGP-RMEALLFAAARDDHVE 79 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCH-HHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998 3333444444 2222111234444444321 10011 1112222221 23345
Q ss_pred HHHHHHHhCCCcEEEECcC
Q 015774 289 SLLVTALNEGRDVIMDGTL 307 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~ 307 (400)
..+..++++|..||.|.-.
T Consensus 80 ~~i~~~l~~g~~Vi~DRy~ 98 (213)
T PRK13973 80 EVIRPALARGKIVLCDRFI 98 (213)
T ss_pred HHHHHHHHCCCEEEEcchh
Confidence 5678899999999998644
No 141
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=3.4e-05 Score=82.07 Aligned_cols=58 Identities=22% Similarity=0.222 Sum_probs=50.7
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-..|||++|.++++.+.+.+.+...++. .+.|..+|++|+||+||||+|+.+++.+.+
T Consensus 12 a~kyRP~~f~dliGq~~vv~~L~~ai~~----------------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLVKVLSYTILN----------------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hhhhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4679999999999999998877776654 456789999999999999999999999865
No 142
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.77 E-value=1.1e-05 Score=74.12 Aligned_cols=27 Identities=37% Similarity=0.714 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+++.+|+|.|+|||||||+++.|+..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 466799999999999999999999986
No 143
>PRK13949 shikimate kinase; Provisional
Probab=97.76 E-value=0.00016 Score=65.97 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-|+|.|+|||||||+++.|++.+++ .+++.|.+-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~-------~~id~D~~i 36 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGL-------SFIDLDFFI 36 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-------CeecccHHH
Confidence 3899999999999999999999966 799988754
No 144
>PRK05439 pantothenate kinase; Provisional
Probab=97.76 E-value=5e-05 Score=76.26 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=38.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
...|.+|.|+|+|||||||+++.|+..++-...+..+.+|+.|.|--
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 56899999999999999999999999773111245788999999973
No 145
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.76 E-value=9e-05 Score=71.94 Aligned_cols=55 Identities=22% Similarity=0.396 Sum_probs=45.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.|||++|+++.+...+...+..+++. ...|. +++.|+||+||||+++.+++.+
T Consensus 8 ~~kyrP~~~~~~~g~~~~~~~l~~~i~~----------------------~~~~~-~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 8 VEKYRPRTLDEIVGQEEIVERLKSYVKE----------------------KNMPH-LLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred chhhCCCcHHHhcCcHHHHHHHHHHHhC----------------------CCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999988887777766643 22344 5999999999999999999987
No 146
>PRK14528 adenylate kinase; Provisional
Probab=97.75 E-value=8.6e-05 Score=68.40 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.|++.|+|||||||+++.|++.+|+ .+++.|++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~-------~~is~~~~ 35 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSI-------PQISTGDI 35 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------CeeeCCHH
Confidence 4788999999999999999999955 68887765
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00011 Score=79.12 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=52.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..|||++|+++++++.++..+..++.. .+-|..+|++|++|.||||+|+.|++.+.
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~~----------------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIES----------------------NKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999888777765 45678999999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (563)
T PRK06647 64 C 64 (563)
T ss_pred c
Confidence 5
No 148
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.74 E-value=2.2e-05 Score=70.48 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+|+|.|+|||||||+++.|+..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999976
No 149
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00011 Score=79.98 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=51.8
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+.+.|||+.|+++++++.++..|...+++ .+-+..+|+.|++|+||||+|+.|++.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~----------------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQE----------------------NRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 46789999999999999998888877765 34467899999999999999999999997
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 C 64 (624)
T PRK14959 64 C 64 (624)
T ss_pred c
Confidence 6
No 150
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.00015 Score=68.15 Aligned_cols=91 Identities=22% Similarity=0.342 Sum_probs=59.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-----
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS----- 283 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~----- 283 (400)
...|.+||+-|+|||||-|....+++.+|| .||++.++ +|..+...|. ..+..+...+
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~f-------tHlSaGdL-----LR~E~~~~gs-----e~g~~I~~~i~~G~i 67 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGF-------THLSAGDL-----LRAEIASAGS-----ERGALIKEIIKNGDL 67 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCc-------eeecHHHH-----HHHHHccccC-----hHHHHHHHHHHcCCc
Confidence 356779999999999999999999999977 89986543 3444444211 0011111100
Q ss_pred --HHHHHHHHHHHHhCCCc---EEEECcCCChHHHHHH
Q 015774 284 --TDAASSLLVTALNEGRD---VIMDGTLSWVPFVEQT 316 (400)
Q Consensus 284 --~~~ae~lie~AL~eG~d---VIIDgT~~~~~~re~~ 316 (400)
....-++++.++.+-.+ ++|||--...+....+
T Consensus 68 VP~ei~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~f 105 (195)
T KOG3079|consen 68 VPVEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEF 105 (195)
T ss_pred CcHHHHHHHHHHHHHhcCCCCeEEecCCCCChHHHHHH
Confidence 23444566667765544 9999998887766555
No 151
>PLN02459 probable adenylate kinase
Probab=97.73 E-value=0.00015 Score=71.38 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=29.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.|..|++.|+|||||||+++.|++.+++ .+|++.++
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~-------~~is~gdl 63 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGV-------PHIATGDL 63 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCC-------cEEeCcHH
Confidence 4456777899999999999999999965 88886543
No 152
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.71 E-value=2.8e-05 Score=71.35 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=34.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+|.|+|+|||||||+++.|+..+. ..+.++.+|+.|+|..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~--~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR--VNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEehhhccc
Confidence 588999999999999999999983 3455789999999984
No 153
>PRK15453 phosphoribulokinase; Provisional
Probab=97.71 E-value=4.4e-05 Score=75.93 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=37.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~ 256 (400)
+++.+|.++|.|||||||+++.|++.++ ..+.++.+|+.|.|...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~--~~~~~~~vi~~D~yh~y 47 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR--RENINAAVVEGDSFHRY 47 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--hcCCCeEEEeccccccc
Confidence 4566899999999999999999998873 23446899999999853
No 154
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.71 E-value=7.3e-05 Score=67.31 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+++|+|+|||||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999998753
No 155
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=6.5e-05 Score=75.60 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=51.3
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+-+.|||++|+++++++.+.+.+..+++. .+.|..+++.|+||+||||++..+++.+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~----------------------~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN----------------------NHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999988877777765 3457899999999999999999999987
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
..
T Consensus 64 ~~ 65 (367)
T PRK14970 64 NQ 65 (367)
T ss_pred cC
Confidence 53
No 156
>PRK14529 adenylate kinase; Provisional
Probab=97.70 E-value=0.00018 Score=69.01 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=52.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccc----hHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKET----DVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~----D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
|+|.|+|||||||+++.|++.+++ .+++ +|.||+. .++-+.+.. ....+..+.+ ..+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~-------~~is~gdllr~~i~~~t~lg~~i~~------~i~~G~lvpd---ei~~~ 66 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDL-------AHIESGAIFREHIGGGTELGKKAKE------YIDRGDLVPD---DITIP 66 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-------CCcccchhhhhhccCCChHHHHHHH------HHhccCcchH---HHHHH
Confidence 788999999999999999999965 6675 4555531 000000000 0111111111 12222
Q ss_pred HHHHHHhC--CCcEEEECcCCChHHHHHHHHHH
Q 015774 290 LLVTALNE--GRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 290 lie~AL~e--G~dVIIDgT~~~~~~re~~i~~a 320 (400)
++...+.+ ...+||||.-.+....+.+.++.
T Consensus 67 lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l 99 (223)
T PRK14529 67 MILETLKQDGKNGWLLDGFPRNKVQAEKLWEAL 99 (223)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHH
Confidence 33344432 46799999999888777665543
No 157
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=0.00013 Score=81.85 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=52.8
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..||+++|++|++++.++..|...++. .+-++.+|+.|++|+||||+|+.|++.+.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~----------------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS----------------------GRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh----------------------CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988888765 45678999999999999999999999997
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 63 C 63 (824)
T PRK07764 63 C 63 (824)
T ss_pred c
Confidence 6
No 158
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.70 E-value=5.8e-05 Score=81.76 Aligned_cols=60 Identities=15% Similarity=0.254 Sum_probs=51.9
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+.|||+.|+.+++++.+.+.+...+.. .+.|+.+|+.|++|+||||+|+.+|+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~----------------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN----------------------NKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456889999999999999998888776654 4567899999999999999999999998
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
.+
T Consensus 63 ~C 64 (605)
T PRK05896 63 NC 64 (605)
T ss_pred cC
Confidence 54
No 159
>PLN02165 adenylate isopentenyltransferase
Probab=97.67 E-value=0.0001 Score=74.74 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.+.+|+|.|++||||||++..|+..+++ .+|++|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~-------eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPS-------EIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCC-------ceecCChh
Confidence 34558999999999999999999999854 78999987
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=6.1e-05 Score=61.36 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=33.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+..+++.|+||+||||++..++..++. ...+++.++++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccc
Confidence 457899999999999999999999853 112578888887664
No 161
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.66 E-value=0.00011 Score=67.37 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|+|.+||||||+++.|++..++ .++|+|++-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~-------~~i~~D~~~ 34 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHF-------PVIDADKIA 34 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC-------eEEeCCHHH
Confidence 4789999999999999999988644 899999884
No 162
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=8.5e-05 Score=80.53 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=53.0
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+-..|||+.|+++++++.+++.+...++. .+.|+.+|+.|++|+||||+|+.|++.+.
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~----------------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFET----------------------GRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 56789999999999999999998887765 45788999999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 72 c 72 (598)
T PRK09111 72 Y 72 (598)
T ss_pred c
Confidence 5
No 163
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0002 Score=76.82 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=51.6
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+.|||++|+++++++.++..+...+.. .+-|.++|+.|++|+||||+|+.+++.+.
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~----------------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDN----------------------NRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHc----------------------CCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 45789999999999999998888777754 45789999999999999999999999985
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 62 c 62 (535)
T PRK08451 62 C 62 (535)
T ss_pred C
Confidence 3
No 164
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.63 E-value=3.9e-05 Score=70.00 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|+|+|||||||+++.|++ +|+ .+|++|++-
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~-------~~i~~D~~~ 33 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGI-------PVIDADKIA 33 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCC-------CEEecCHHH
Confidence 488999999999999999998 754 899998875
No 165
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.62 E-value=4.8e-05 Score=70.90 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|+|++||||||+++.|++.+|+ .++|+|.+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~-------~~i~~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGI-------PILDADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC-------eEeeCcHHH
Confidence 6899999999999999999998855 899998875
No 166
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=9.6e-05 Score=81.55 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=52.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
....|||++|+++++.+.+.+.+..+++. .+-|+.+|+.|++|+||||+|+.+|+.+.
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~----------------------~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKS----------------------NKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46789999999999999999888887765 45688999999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 66 C 66 (725)
T PRK07133 66 C 66 (725)
T ss_pred c
Confidence 5
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.60 E-value=6.2e-05 Score=63.00 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
|++.|+||+||||+++.+++.++. ..+.+++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----cccccccccc
Confidence 689999999999999999999853 5566775544
No 168
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.60 E-value=5.5e-05 Score=70.70 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+|.|+|+|||||||+++.|++.+ .++.+|+.|+|.-
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~------~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL------PNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc------CCCeEEccccccC
Confidence 57899999999999999999998 2568999999873
No 169
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.59 E-value=4.7e-05 Score=63.49 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~l 236 (400)
|+|+|+|||||||+++.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999996
No 170
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00073 Score=69.61 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKET 256 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~ 256 (400)
..+.++++.|++|+||||++..|+..+-. ..+ ..+.+|..|.+|..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~g 181 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIG 181 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEeccccccc
Confidence 45679999999999999999999987521 122 46788999999853
No 171
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.58 E-value=0.00065 Score=67.66 Aligned_cols=37 Identities=24% Similarity=0.084 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.++..|+|+|+|||||||+++.|++.+|+ .+++.|..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~-------~~id~D~~ 167 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGV-------PFVELNRE 167 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEeHHHH
Confidence 46678999999999999999999999977 57776643
No 172
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.58 E-value=0.00011 Score=78.60 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=49.7
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.|+|++.++++-+.+--..+.+|++++.. ......+++|+|||||||||+++.|++++|+
T Consensus 10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~------------------~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFS------------------GSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred chhcCCCCHHHhhccHHHHHHHHHHHHHHhc------------------cCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999998777777777788876211 0223459999999999999999999999976
No 173
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.57 E-value=5.6e-05 Score=69.16 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+|++.|||||||+|++..|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999999885
No 174
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.57 E-value=0.00017 Score=73.11 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=39.5
Q ss_pred cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 200 ~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.++..+.+....|.+|-++|+|||||||++..|...+ ...+.++.+|+.|.
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l--~~~g~~v~vi~~Dp 94 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL--IEQGHKVAVLAVDP 94 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeCC
Confidence 3444444335678999999999999999999998887 44466788888776
No 175
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00011 Score=77.67 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=51.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.-..|||+.|.++++++.+...+..++.. .+-|.++|++|++|+||||+|+.+++.+.
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~----------------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKL----------------------QRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35679999999999999999888877765 34678899999999999999999999986
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 c 64 (486)
T PRK14953 64 C 64 (486)
T ss_pred C
Confidence 4
No 176
>PLN02924 thymidylate kinase
Probab=97.57 E-value=0.00078 Score=64.27 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CC--ccccchHHHHHHhcCCCCChhhHhHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-AD--AFKETDVIYRALSSKGHHDDMLQTAELVHQSSTD 285 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aD--efRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~ 285 (400)
.+.+.+|.+.|..||||||.++.|++.+.. .+..++.+. ++ +.. -..+++.+......++ .+....+...-.
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~--~g~~v~~~~ep~~~~~~-g~~ir~~l~~~~~~~~--~~~~llf~adR~ 87 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKG--LGVAAELWRFPDRTTSV-GQMISAYLSNKSQLDD--RAIHLLFSANRW 87 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCceeeeCCCCCChH-HHHHHHHHhCCCCCCH--HHHHHHHHHHHH
Confidence 456789999999999999999999999943 344443332 11 110 1123444433211111 111111111111
Q ss_pred HHHHHHHHHHhCCCcEEEECcCC
Q 015774 286 AASSLLVTALNEGRDVIMDGTLS 308 (400)
Q Consensus 286 ~ae~lie~AL~eG~dVIIDgT~~ 308 (400)
.....+..+++.|..||+|--..
T Consensus 88 ~~~~~I~pal~~g~vVI~DRy~~ 110 (220)
T PLN02924 88 EKRSLMERKLKSGTTLVVDRYSY 110 (220)
T ss_pred HHHHHHHHHHHCCCEEEEccchh
Confidence 11245888999999999996543
No 177
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.56 E-value=0.00011 Score=67.79 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCC----eEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATN----AVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~----avvIdaDefR 254 (400)
||-|+|+|||||||+|+.|+..++ ..+.. ..+++.|.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccc
Confidence 688999999999999999999994 22333 5678888875
No 178
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.55 E-value=0.00018 Score=66.74 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|-|+|..||||||+++.|++ +| +.++|+|.+-
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G-------~~vidaD~i~ 34 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LG-------FPVIDADEIA 34 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT--------EEEEHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CC-------CCEECccHHH
Confidence 3688999999999999999998 64 4899988654
No 179
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.54 E-value=9.1e-05 Score=67.99 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=32.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|+|+|||||||+++.|+..++ +.++.+++.|+|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCeEEEEecccc
Confidence 578999999999999999999872 3467899999886
No 180
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0014 Score=68.48 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
..+.+|.+.|++|+||||++..|+..+-.......+-++..|.+|.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 4577999999999999999999998641111123556788999984
No 181
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.53 E-value=8.9e-05 Score=68.74 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+|.|+|++||||||+++.|++ +|+ .++|+|.+-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~-------~~i~~D~~~ 36 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGA-------PVIDADAIA 36 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCC-------EEEEecHHH
Confidence 45899999999999999999998 754 899999875
No 182
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.52 E-value=0.00015 Score=74.76 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHhhhhhhhhhhhhhHHHHH---HHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 159 MAATRKQRFEKVTKDLKMKRV---FSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~---~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.+||+.|+++++...+... +..+++. . .+.-+++.|+||+||||+|+.+++.
T Consensus 3 a~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~----------------------~-~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 3 AERMRPKTLDEVVGQEHLLGPGKPLRRMIEA----------------------G-RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred hhhhCCCCHHHhcCcHHHhCcchHHHHHHHc----------------------C-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999998876444 5444432 1 2235677999999999999999998
Q ss_pred ccccCCCCCeEEEeCC
Q 015774 236 SFWSGAATNAVVVEAD 251 (400)
Q Consensus 236 lg~~~~~~~avvIdaD 251 (400)
++. ..+.+++-
T Consensus 60 ~~~-----~~~~l~a~ 70 (413)
T PRK13342 60 TDA-----PFEALSAV 70 (413)
T ss_pred hCC-----CEEEEecc
Confidence 743 55666643
No 183
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.51 E-value=0.00039 Score=75.63 Aligned_cols=123 Identities=18% Similarity=0.296 Sum_probs=72.9
Q ss_pred HHHHHHhhccccchhhHH-HhhhcCCCcch-hHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHH
Q 015774 84 KLAYEYLKKSKGCEDNIY-EYFSKEAEPES-LYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAA 161 (400)
Q Consensus 84 ~l~~~~~~~~~~~~~~i~-~~~~~~~~~~~-l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 161 (400)
++...+-++-+.+.+.|. ..+++++.+|. ...+-++.||+ + .++.+.+-+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------~-----~~~~~~~~~~~~ 147 (615)
T TIGR02903 93 KVETRMQERQNKYLEEIRLQVLKEEKGPENSSTLKKLERLEK--------------------L-----EKKKLHKSAQSL 147 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH--------------------H-----HHHHhhhHHhhh
Confidence 444444455555555554 55555555554 33333444444 1 234466778899
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc--
Q 015774 162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS-- 239 (400)
Q Consensus 162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~-- 239 (400)
+|++.|+.+.+.......+ +.. ++ ...|..+++.|+||+||||+|+.+.....-.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l---~~~---ia-----------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~ 204 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKAL---LAK---VA-----------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKH 204 (615)
T ss_pred cCcCcHHhceeCcHHHHHH---HHH---Hh-----------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence 9999999998866554432 222 11 1234468889999999999999987654100
Q ss_pred ---CCCCCeEEEeCCccc
Q 015774 240 ---GAATNAVVVEADAFK 254 (400)
Q Consensus 240 ---~~~~~avvIdaDefR 254 (400)
....+.+.+++..+.
T Consensus 205 ~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 205 TPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred CcccCCCCeEEEechhcc
Confidence 012345778766553
No 184
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.51 E-value=0.00013 Score=67.96 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=34.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.+.+|.++|+|||||||+++.|+..+.. .++.+++.|.|.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~----~~~~~i~~D~~~ 44 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK----LEIVIISQDNYY 44 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcc----cCCeEecccccc
Confidence 356789999999999999999999998731 356788888875
No 185
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.51 E-value=0.00017 Score=70.58 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=62.2
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.--++.|||..+.++++|+.....++ .|++ .+..|. ++++||||.||||-+..||++
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~-------via~---------------~gnmP~-liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLS-------VIAK---------------EGNMPN-LIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHH-------HHHH---------------cCCCCc-eEeeCCCCCchhhHHHHHHHH
Confidence 34789999999999999998655444 3442 145676 467999999999999999998
Q ss_pred ccccCCCCCeEEEeCCccccchHHHHHH
Q 015774 236 SFWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 236 lg~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
+--+.-..++.-+++.+=|--|+.|..+
T Consensus 72 LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 72 LLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HhChhhhhHhhhccCccccccHHHHHHH
Confidence 7211123345668887777778887776
No 186
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.51 E-value=0.00044 Score=68.46 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=39.2
Q ss_pred ccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 201 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 201 v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...+......+.+|.+.|+|||||||++..|+..+ ...+..+.+|+.|...
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~--~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL--RRRGLKVAVIAVDPSS 74 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCC
Confidence 334444345678899999999999999999999876 3445677889888544
No 187
>PRK13975 thymidylate kinase; Provisional
Probab=97.50 E-value=0.00082 Score=61.14 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=24.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+.+|++.|++||||||+++.|++.++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999995
No 188
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.49 E-value=0.00011 Score=69.94 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+|-++|+|||||||+++.|+..+.-...+.++.+|+.|.|..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 467899999999999999999873101245678899999963
No 189
>PLN02840 tRNA dimethylallyltransferase
Probab=97.49 E-value=0.00045 Score=72.12 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=35.8
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|-......+.+|+|.|++||||||++..|++.++ ..+|+.|.+.
T Consensus 12 ~~~~~~~~~~~vi~I~GptgsGKTtla~~La~~~~-------~~iis~Ds~q 56 (421)
T PLN02840 12 GSGASKTKKEKVIVISGPTGAGKSRLALELAKRLN-------GEIISADSVQ 56 (421)
T ss_pred CCccccccCCeEEEEECCCCCCHHHHHHHHHHHCC-------CCeEeccccc
Confidence 33333456677999999999999999999999984 3688888763
No 190
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.48 E-value=0.00016 Score=72.07 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=36.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
.+.|.+|-|+|+|||||||+++.|...+.-....+.+.+++.|.|..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 46799999999999999999998877662101234678899999884
No 191
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00013 Score=70.02 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=36.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+++.+|-++|++||||||+++.|...++- ..+++|+-|+|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~----~~~~~I~~D~YYk 47 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV----EKVVVISLDDYYK 47 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc----CcceEeecccccc
Confidence 45689999999999999999999999952 2778999999874
No 192
>PRK13808 adenylate kinase; Provisional
Probab=97.48 E-value=0.00077 Score=68.46 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
|+|.|+|||||||++..|++.+|+ ++|+.|++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl-------~~is~gdl 34 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGI-------VQLSTGDM 34 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-------ceecccHH
Confidence 788999999999999999999955 89996654
No 193
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.00045 Score=75.21 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=51.5
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
...|||..|++++++..++..+...+.. .+-|..+|++|++|+||||+|..+++.+.+
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~----------------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT----------------------NKLAHAYLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc----------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4689999999999999999988887765 457899999999999999999999998854
No 194
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.45 E-value=0.00018 Score=73.61 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=40.2
Q ss_pred hhh-hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 166 RFE-KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 166 rf~-~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
=|. ++.+.+++...+..++.. .+. .......++++.|||||||||+|..|++.++
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~---~a~--------------g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKS---AAQ--------------GLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHH---HHh--------------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344 678888876666665554 221 1133567899999999999999999999984
No 195
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0048 Score=66.43 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+...+|.|.|++|+||||++..|+..+-....+.++.+++.|.+|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 3567888999999999999999998752111234688999999985
No 196
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.43 E-value=0.00015 Score=68.79 Aligned_cols=38 Identities=26% Similarity=0.289 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|.+|-|+|++||||||+++.|++.+|+ .++|+|.+-
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~-------~vidaD~i~ 41 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNL-------NVVCADTIS 41 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCC-------eEEeccHHH
Confidence 46889999999999999999999998854 689988764
No 197
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.43 E-value=0.00015 Score=67.93 Aligned_cols=37 Identities=35% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.|.+|-++|++||||||+++.|.. +|+ .++|+|.+-
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~-------~v~d~D~i~ 39 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGC-------ELFEADRVA 39 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCC-------eEEeccHHH
Confidence 5678999999999999999999996 544 899988654
No 198
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.42 E-value=0.00019 Score=56.02 Aligned_cols=32 Identities=34% Similarity=0.584 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
+|+++|+|||||||+++.|++.++ +.+..+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~----~~~~~~i~ 32 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLG----GRSVVVLD 32 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhc----CCCEEEEe
Confidence 478899999999999999999961 23556664
No 199
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.42 E-value=0.00041 Score=73.12 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=52.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
-.-+|+++.+.+.++..+.++++-++.-. ..... ..+.|.-+||.||||+|||++++.++...+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~---------~~~~~--g~~~~~giLL~GppGtGKT~la~alA~~~~~---- 114 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPS---------KFTKL--GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV---- 114 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHH---------HHHhc--CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC----
Confidence 34689999999999988888777532210 00000 1345667999999999999999999999854
Q ss_pred CCeEEEeCCcc
Q 015774 243 TNAVVVEADAF 253 (400)
Q Consensus 243 ~~avvIdaDef 253 (400)
+.+.+++.+|
T Consensus 115 -~~~~i~~~~~ 124 (495)
T TIGR01241 115 -PFFSISGSDF 124 (495)
T ss_pred -CeeeccHHHH
Confidence 5555654443
No 200
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.42 E-value=3.7e-05 Score=67.68 Aligned_cols=23 Identities=43% Similarity=0.767 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+|+|.|++||||||+++.|++.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47889999999999999999985
No 201
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.39 E-value=0.00076 Score=63.13 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+|.++|++||||||+++.|+. +| +.+||+|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g-------~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG-------FLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC-------CeEEeCcHH
Confidence 3789999999999999999987 54 489999975
No 202
>PLN02748 tRNA dimethylallyltransferase
Probab=97.39 E-value=0.00041 Score=73.35 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.+.+|+|.|++||||||++..||..+ ++.+|++|.+
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~-------~~eii~~Dsm 56 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHF-------PVEIINADSM 56 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc-------CeeEEcCchh
Confidence 556699999999999999999999998 4589999964
No 203
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.38 E-value=2.5e-05 Score=71.22 Aligned_cols=79 Identities=24% Similarity=0.331 Sum_probs=47.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccc----------------cCCCCCeEEEeCCccccchHHHHHHhcC-----CCCC
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFW----------------SGAATNAVVVEADAFKETDVIYRALSSK-----GHHD 270 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~----------------~~~~~~avvIdaDefRe~D~irk~L~~~-----G~~~ 270 (400)
+.+|+|+||+||||||+++.|.+.+.- +.+|.++.+++.++|. +.+... +...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~------~~~~~~~fie~~~~~ 75 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFE------RMIKAGEFIEYGEYD 75 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHH------HHHHTTHEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhh------hhhccccEEEEeeec
Confidence 568899999999999999999987631 2235556666666554 112111 1000
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECc
Q 015774 271 DMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGT 306 (400)
Q Consensus 271 d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT 306 (400)
+..+ .....-+..++++|..+|+|..
T Consensus 76 g~~Y----------Gt~~~~i~~~~~~gk~~il~~~ 101 (183)
T PF00625_consen 76 GNYY----------GTSKSAIDKVLEEGKHCILDVD 101 (183)
T ss_dssp TEEE----------EEEHHHHHHHHHTTTEEEEEET
T ss_pred chhh----------hhccchhhHhhhcCCcEEEEcc
Confidence 0111 1111234558889999999976
No 204
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.37 E-value=0.00075 Score=65.78 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=42.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+.|+++++...++..+..++...+. ....|.-+++.|+||+||||+++.+++.++.
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~------------------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKM------------------RQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHh------------------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3688889988888887777764211 0223445789999999999999999999853
No 205
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.36 E-value=0.0003 Score=69.98 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=50.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC----------C--CC--C--hh--hHh
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------G--HH--D--DM--LQT 275 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~----------G--~~--~--d~--~~a 275 (400)
+|+++|++|||||+++..|++.+ ++.+|+.|.+. +|+.+.-. + |+ + ++ .+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~-------~~~iis~Ds~q----vY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~ 69 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL-------NAEIISVDSMQ----IYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS 69 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC-------CCcEEEechhh----eeeeccccCCCCCHHHHcCccEEEEEEechhheEc
Confidence 58999999999999999999998 44789999864 23333110 1 10 0 11 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEEC
Q 015774 276 AELVHQSSTDAASSLLVTALNEGRDVIMDG 305 (400)
Q Consensus 276 a~~v~~~~~~~ae~lie~AL~eG~dVIIDg 305 (400)
. ......+...++...+.|...|+.|
T Consensus 70 v----~~f~~~a~~~i~~~~~~g~~pi~vG 95 (287)
T TIGR00174 70 A----ADFQTLALNAIADITARGKIPLLVG 95 (287)
T ss_pred H----HHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 1 2234556678888899998666654
No 206
>PTZ00301 uridine kinase; Provisional
Probab=97.35 E-value=0.00023 Score=67.51 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCC-eEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~-avvIdaDefR 254 (400)
.+|-|+|+|||||||+|+.|++++. ...+++ +.++.-|.|.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~-~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM-AHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH-hhcCCCeEEEeCCCCCc
Confidence 6899999999999999999987762 011223 4578888886
No 207
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.33 E-value=0.00081 Score=69.78 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=40.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~ 256 (400)
.++.+|.+.||.|+||||+..+||.++.......++-+|..|+||.-
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG 247 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG 247 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence 34889999999999999999999999853355668899999999953
No 208
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.33 E-value=0.0012 Score=59.10 Aligned_cols=27 Identities=37% Similarity=0.283 Sum_probs=24.7
Q ss_pred CCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 221 MGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 221 PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
|||||||+++.||+.++| .++|.|.+-
T Consensus 1 ~GsGKStvg~~lA~~L~~-------~fiD~D~~i 27 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGR-------PFIDLDDEI 27 (158)
T ss_dssp TTSSHHHHHHHHHHHHTS-------EEEEHHHHH
T ss_pred CCCcHHHHHHHHHHHhCC-------CccccCHHH
Confidence 799999999999999977 899988765
No 209
>PLN02199 shikimate kinase
Probab=97.32 E-value=0.001 Score=66.80 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..-|+|.|.|||||||+++.|++.+|| .+||+|.+-
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~-------~fIDtD~lI 137 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGY-------TFFDCDTLI 137 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC-------CEEehHHHH
Confidence 346899999999999999999999976 799988755
No 210
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.31 E-value=0.00022 Score=70.66 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+|.++|++||||||+++.|.+.++ ..+.++.+|+.|.|..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~--~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA--REGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcCCceEEEecccccc
Confidence 578999999999999999999883 3344689999999985
No 211
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.28 E-value=0.00026 Score=67.35 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=30.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+|.+.|++||||||+++.|++++++ .+++++.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~-------~~~~~g~~~ 37 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGY-------AYLDSGAMY 37 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC-------ceeeCchHH
Confidence 468999999999999999999999965 677877654
No 212
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.25 E-value=0.0017 Score=68.91 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-|+++|+|||||||+++.|++.+|+ .++|.|...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~-------~~id~D~~i 35 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDL-------QFIDMDEEI 35 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC-------eEEECcHHH
Confidence 3799999999999999999999966 799999765
No 213
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0037 Score=58.41 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+|.++|.||+||||+++.|+ .+|+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 68999999999999999999 7776
No 214
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.25 E-value=0.00066 Score=57.22 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=32.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc---cCCCCCeEEEeCCccccchHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW---SGAATNAVVVEADAFKETDVIYRALS 264 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~---~~~~~~avvIdaDefRe~D~irk~L~ 264 (400)
...++++.|+||+||||+++.++..+.. .....+++.++...-.....++..+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 59 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEIL 59 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4568999999999999999999998621 00024667776555443334444443
No 215
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.00045 Score=75.26 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=49.5
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-..||++.|.+++++..+...+..++.. .+-+..+|+.|++|+||||+|+.+|+.+++
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~----------------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALIS----------------------NRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3679999999999999998888777765 233457899999999999999999999875
No 216
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.0031 Score=62.22 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=35.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++..+.+.|++|+||||++..|+..+ ..++..+.+++.|.+|
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCC
Confidence 55789999999999999999999887 3345678889999987
No 217
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.22 E-value=0.00033 Score=66.32 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=30.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+|-++|.|||||||+++.+++ +|+ .+||+|.+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~-------~vidaD~v~ 36 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGF-------PVIDADDVA 36 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCC-------eEEEccHHH
Confidence 46899999999999999999999 755 899988754
No 218
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.21 E-value=0.0013 Score=59.81 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+|.+.|++||||||+++.|++.+++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998754
No 219
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.20 E-value=0.00048 Score=66.08 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=28.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+.|..+++.|+||+||||+|+.|+.. .++++.|.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~---------~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGK---------TLVLSFDM 43 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCC---------CEEEeccc
Confidence 456888999999999999999998633 37888776
No 220
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.20 E-value=0.0016 Score=58.00 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
|.|+|+||+||||+++.|++. |+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~ 24 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GY 24 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CC
Confidence 689999999999999999988 65
No 221
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.19 E-value=0.0024 Score=68.53 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|+|.|.|||||||+++.||+.++| -++|.|..-
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~-------~fiD~D~~i 41 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRL-------PFADADVEI 41 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCC-------CEEEchHHH
Confidence 36788999999999999999999987 699999754
No 222
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=97.19 E-value=0.0022 Score=58.17 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=48.1
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc-cchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHHHHHHH
Q 015774 217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSLLVTA 294 (400)
Q Consensus 217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR-e~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~lie~A 294 (400)
+-|+.||||||+++.|.+.+ ++.+.++++.-...-. ....+++.+...... ++ .+....+... .......+..+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l--~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~-~~-~~~~~l~~a~r~~~~~~~I~~~ 76 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEAL--KEKGYKVIITFPPGSTPIGELIRELLRSESEL-SP-EAEALLFAADRAWHLARVIRPA 76 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHH--HHTTEEEEEEESSTSSHHHHHHHHHHHTSSTC-GH-HHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH--HHcCCcccccCCCCCChHHHHHHHHHhcccCC-CH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999999998 3344442232222111 112334444422111 12 2222222222 23444577889
Q ss_pred HhCCCcEEEECc
Q 015774 295 LNEGRDVIMDGT 306 (400)
Q Consensus 295 L~eG~dVIIDgT 306 (400)
+++|..||+|--
T Consensus 77 l~~g~~VI~DRy 88 (186)
T PF02223_consen 77 LKRGKIVICDRY 88 (186)
T ss_dssp HHTTSEEEEESE
T ss_pred HcCCCEEEEech
Confidence 999999999964
No 223
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.19 E-value=0.00074 Score=55.80 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..+++.|+||+||||+++.++..+. ..+..++.++.+.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL 59 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence 445789999999999999999999872 233466777655544
No 224
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.19 E-value=0.00035 Score=74.54 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|.+|.+.|+|||||||+++.|++.+|+ .++|+|.+.
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~-------~~~d~g~~Y 319 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGL-------LYLDTGAMY 319 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC-------eEecCCcee
Confidence 46789999999999999999999999965 899977765
No 225
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00074 Score=62.01 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
||++|.||+||||++..||+.+++
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCC
Confidence 789999999999999999999866
No 226
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.15 E-value=0.0019 Score=60.53 Aligned_cols=33 Identities=36% Similarity=0.403 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.++|++||||||+++.|+. +| ..++++|.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g-------~~~i~~D~i~ 33 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG-------AFGISADRLA 33 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC-------CEEEecchHH
Confidence 478999999999999998865 44 4899999874
No 227
>PRK07933 thymidylate kinase; Validated
Probab=97.13 E-value=0.0031 Score=59.65 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-C---CccccchHHHHHHhcC-CCCChhhHhHHHHHHHH-HHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-A---DAFKETDVIYRALSSK-GHHDDMLQTAELVHQSS-TDAA 287 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-a---DefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~-~~~a 287 (400)
+|.+.|.-||||||+++.|++.+. ..+.+++++. + +..- .+.+++.+.+. +.......+....+... ....
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~--~~g~~v~~~~~P~~~~~~~-g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~ 78 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALE--ARGRSVATLAFPRYGRSVH-ADLAAEALHGRHGDLADSVYAMATLFALDRAGAR 78 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCCCCc-cHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhhH
Confidence 789999999999999999999994 3444555443 1 1111 23455555432 11101111112221111 1111
Q ss_pred HHHHHHHHhCCCcEEEECcC
Q 015774 288 SSLLVTALNEGRDVIMDGTL 307 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~ 307 (400)
..+..+++.|..||.|-..
T Consensus 79 -~~I~p~l~~g~~VI~DRy~ 97 (213)
T PRK07933 79 -DELAGLLAAHDVVILDRYV 97 (213)
T ss_pred -HHHHHHHhCCCEEEECCcc
Confidence 2466788999999999654
No 228
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=0.0008 Score=73.59 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=51.7
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.-.+.|||+.+++++.+.+....+.+|++.+.. ......+++|.|+||+||||+++.++..+
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~------------------~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL------------------ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc------------------ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999888878888776211 02234589999999999999999999988
Q ss_pred cc
Q 015774 237 FW 238 (400)
Q Consensus 237 g~ 238 (400)
++
T Consensus 135 ~~ 136 (637)
T TIGR00602 135 GI 136 (637)
T ss_pred hh
Confidence 64
No 229
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.12 E-value=0.00084 Score=62.90 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=32.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+..+++.|++|+|||+++..++... ...+..+++++++.+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~--~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA--SYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEehHHhH
Confidence 4467999999999999999999876 2335577888877654
No 230
>CHL00176 ftsH cell division protein; Validated
Probab=97.12 E-value=0.0017 Score=71.04 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=53.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
.-+|+++.+-++++..+.++++-++.-. .+.. + ..+.|.-+|+.|+||+|||++|+.++.+.+.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~------~~~~---~--g~~~p~gVLL~GPpGTGKT~LAralA~e~~~----- 242 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPE------RFTA---V--GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV----- 242 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHH------HHhh---c--cCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----
Confidence 3688999998899988888876533211 1110 1 1345677999999999999999999998854
Q ss_pred CeEEEeCCccc
Q 015774 244 NAVVVEADAFK 254 (400)
Q Consensus 244 ~avvIdaDefR 254 (400)
..+.+++.+|.
T Consensus 243 p~i~is~s~f~ 253 (638)
T CHL00176 243 PFFSISGSEFV 253 (638)
T ss_pred CeeeccHHHHH
Confidence 55666655543
No 231
>PLN02796 D-glycerate 3-kinase
Probab=97.11 E-value=0.00095 Score=68.14 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=40.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS 264 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~ 264 (400)
..|.+|-|+|++||||||+++.|...+. ..+..+..|+-|+|.-....+..+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~--~~g~~~g~IsiDdfYLt~~e~~~L~ 150 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN--ATGRRAASLSIDDFYLTAADQAKLA 150 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc--ccCCceeEEEECCcccchhhHHHHH
Confidence 5789999999999999999999999883 2334577888899874444344443
No 232
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.11 E-value=0.00052 Score=58.74 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++++.|+||+||||++..++... ...+..+++++.+.-.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 47899999999999999999887 3345678888877654
No 233
>CHL00181 cbbX CbbX; Provisional
Probab=97.09 E-value=0.00082 Score=66.50 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHH--HHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHH
Q 015774 151 KTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKA--IRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTV 228 (400)
Q Consensus 151 ~~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~--i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTl 228 (400)
|+..++.-++...+.=++.+.+-..+|..+.+++.-+.. +.. ... +.. ...+.-+++.|+||+||||+
T Consensus 6 ~~~~~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~-----~~g----~~~-~~~~~~ill~G~pGtGKT~l 75 (287)
T CHL00181 6 QEEYEKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK-----NLG----LTS-SNPGLHMSFTGSPGTGKTTV 75 (287)
T ss_pred hhhccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH-----HcC----CCC-CCCCceEEEECCCCCCHHHH
Confidence 344455556666666667788888889888887753211 110 001 111 22344588999999999999
Q ss_pred HHHHHHhc
Q 015774 229 LKDIMKES 236 (400)
Q Consensus 229 Ak~LA~~l 236 (400)
|+.+++.+
T Consensus 76 Ar~la~~~ 83 (287)
T CHL00181 76 ALKMADIL 83 (287)
T ss_pred HHHHHHHH
Confidence 99998865
No 234
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.09 E-value=0.0032 Score=66.07 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=49.8
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774 170 VTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (400)
Q Consensus 170 v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI 248 (400)
|++.+.+++.++..+- .|+... +..+.. ..-.|.-|+|.|+||+||||+|+.|++.++. +.+.+
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~---------l~~~~~-~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~-----~fi~v 81 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQ---------LPEELR-DEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKV 81 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc---------CCcccc-cccCCceEEEECCCCCCHHHHHHHHHHHhCC-----hheee
Confidence 7778888888877764 343321 111111 1234678999999999999999999999854 67778
Q ss_pred eCCcccc
Q 015774 249 EADAFKE 255 (400)
Q Consensus 249 daDefRe 255 (400)
|...|.+
T Consensus 82 D~t~f~e 88 (443)
T PRK05201 82 EATKFTE 88 (443)
T ss_pred cchhhcc
Confidence 7776764
No 235
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.09 E-value=0.00043 Score=66.02 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.+|.+.|+|||||||+++.|++.+|+ .+++.|.+
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~-------~~~~~~~~ 38 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGF-------HYLDTGAM 38 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC-------CcccCchh
Confidence 578999999999999999999999966 67887764
No 236
>PLN02348 phosphoribulokinase
Probab=97.08 E-value=0.00075 Score=69.93 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=37.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-------------CCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-------------ATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-------------~~~avvIdaDefRe 255 (400)
.+.|.+|-|+|+|||||||+++.|++.++.... ...+.+|..|+|..
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~ 105 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS 105 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence 367899999999999999999999999852100 13568899999963
No 237
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0016 Score=65.54 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=54.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC----------C--C------CChh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK----------G--H------HDDM 272 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~----------G--~------~~d~ 272 (400)
.|.+|+|+||.+||||-++-.||++++ ..+||.|.+- +|+.|.-. + | ....
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~-------~eIIs~DSmQ----vYr~mdIGTAKps~~e~~~vpHhliDi~~p~e 70 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLG-------GEIISLDSMQ----VYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE 70 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcC-------CcEEecchhh----hcCCCcccCCCCCHHHHcCCCEEEecccCccc
Confidence 477999999999999999999999994 4899999764 34444110 1 1 0112
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhCCC-cEEEECc
Q 015774 273 LQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGT 306 (400)
Q Consensus 273 ~~aa~~v~~~~~~~ae~lie~AL~eG~-dVIIDgT 306 (400)
.+++...+ ..+...++...+.|. .+|+=||
T Consensus 71 ~ysa~~f~----~~a~~~i~~i~~rgk~pIlVGGT 101 (308)
T COG0324 71 SYSAAEFQ----RDALAAIDDILARGKLPILVGGT 101 (308)
T ss_pred cccHHHHH----HHHHHHHHHHHhCCCCcEEEccH
Confidence 33333333 445557788889996 5555555
No 238
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.04 E-value=0.00041 Score=68.33 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=28.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
..+..+|=++|+||+||||+...|...+ .+.+..+-+|.
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~--~~~g~~VaVlA 64 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIREL--RERGKRVAVLA 64 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHH--HHTT--EEEEE
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHH--hhcCCceEEEE
Confidence 4467799999999999999999999998 55566665554
No 239
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.03 E-value=0.0013 Score=68.96 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=41.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
...|.+|-|.|++||||||+++.|...+ +..+.++..|+-|+|.-.+..+..+
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL--~~~g~~vgvISiDDfYLt~eer~kL 261 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLF--RVTGRKSATLSIDDFYLTAEGQAEL 261 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh--cccCCceEEEEECCccCChHHHHHH
Confidence 3479999999999999999999998776 2234467889999998544544444
No 240
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.03 E-value=0.0017 Score=71.82 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=48.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
.+|+++.+.+.++..+.+.++-...- ..+...+ ..+.|.-+|+.|+||+|||++|+.++.+++. +
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~--------~~~~~~~--g~~~~~giLL~GppGtGKT~lakalA~e~~~-----~ 514 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKH--------PEIFEKM--GIRPPKGVLLFGPPGTGKTLLAKAVATESGA-----N 514 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhC--------HHHHHhc--CCCCCceEEEECCCCCCHHHHHHHHHHhcCC-----C
Confidence 46777777778887777766521000 0011111 1346777999999999999999999999854 6
Q ss_pred eEEEeCCc
Q 015774 245 AVVVEADA 252 (400)
Q Consensus 245 avvIdaDe 252 (400)
.+.+++.+
T Consensus 515 fi~v~~~~ 522 (733)
T TIGR01243 515 FIAVRGPE 522 (733)
T ss_pred EEEEehHH
Confidence 66676443
No 241
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0018 Score=67.10 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=46.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.|++|++++.++..+...++.... . +-....+.|+.+|+.||||+||||+|..+|+.+.+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~----------~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA----------D---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc----------c---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 588999999999999988886221 0 00011346899999999999999999999998755
No 242
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0034 Score=62.97 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=57.3
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
=.+.||+.|.+-++.+++|..+.-.|+.-|. ....+-=+|+.||||-||||+|.-+|+++|
T Consensus 17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~------------------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg- 77 (332)
T COG2255 17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKK------------------RGEALDHVLLFGPPGLGKTTLAHIIANELG- 77 (332)
T ss_pred hcccCcccHHHhcChHHHHHHHHHHHHHHHh------------------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-
Confidence 3468999999999999999999988886222 134455689999999999999999999996
Q ss_pred cCCCCCeEEEeCCccc
Q 015774 239 SGAATNAVVVEADAFK 254 (400)
Q Consensus 239 ~~~~~~avvIdaDefR 254 (400)
.+....++-.+-
T Consensus 78 ----vn~k~tsGp~le 89 (332)
T COG2255 78 ----VNLKITSGPALE 89 (332)
T ss_pred ----CCeEeccccccc
Confidence 366666555443
No 243
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.02 E-value=0.0058 Score=63.35 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=44.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.-+|.+|.+-+..+..+.+.++-... . ..+...+ .-..|.-+++.|+||+|||++++.++..++
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~--~------~~~~~~~--Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLT--C------PELYEQI--GIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhc--C------HHHHHhc--CCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788888888888887777763110 0 0000000 024678899999999999999999999984
No 244
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.01 E-value=0.0011 Score=61.38 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..++|.|++|+||||+++.++.... ..+..++.++.+.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH
Confidence 456889999999999999999998862 234567888877664
No 245
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.99 E-value=0.0031 Score=58.38 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=52.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc-ccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHH
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVT 293 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg-~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~ 293 (400)
|+=.+.+|+||||++.+|.+-+| | -+|..|++.... .. . .+...++.
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~w-------gHvQnDnI~~k~--------------~~----~-------f~~~~l~~ 49 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEW-------GHVQNDNITGKR--------------KP----K-------FIKAVLEL 49 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCC-------CccccCCCCCCC--------------HH----H-------HHHHHHHH
Confidence 44478999999999999999999 8 689989886310 10 1 11112222
Q ss_pred HHhCCC-cEEEECcCCChHHHHHHHHHHHhh
Q 015774 294 ALNEGR-DVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 294 AL~eG~-dVIIDgT~~~~~~re~~i~~arkv 323 (400)
+.+.+. -||.|=.+.....|+++++..++.
T Consensus 50 L~~~~~~vViaDRNNh~~reR~ql~~~~~~~ 80 (168)
T PF08303_consen 50 LAKDTHPVVIADRNNHQKRERKQLFEDVSQL 80 (168)
T ss_pred HhhCCCCEEEEeCCCchHHHHHHHHHHHHHh
Confidence 223444 566676778888899998888764
No 246
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.99 E-value=0.0013 Score=63.45 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=38.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+..++-..+|..+.+++.-.+.-.. ... .. +. ..+.+.-+++.|+||+||||+|+.+++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~--~g----~~-~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEK-RKE--EG----LK-TSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHH-HHH--cC----CC-CCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345667777888887777653221110 000 00 01 12233457889999999999999999875
No 247
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.98 E-value=0.0014 Score=67.45 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
..|.-|++.|+||+|||++|+.++.+++. ..+.+++.++
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~-----~~i~v~~~~l 201 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNA-----TFIRVVGSEL 201 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCC-----CEEEeehHHH
Confidence 56778999999999999999999999853 5566654443
No 248
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.98 E-value=0.00085 Score=67.36 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=39.2
Q ss_pred ccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 199 TDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 199 ~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
+.+...+.+...++.+|=++|+||+||||+..+|..++ .+.|..+-+|.-|
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l--~~~G~rVaVlAVD 88 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL--RERGHRVAVLAVD 88 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH--HHCCcEEEEEEEC
Confidence 45555555556788999999999999999999999998 5566666555433
No 249
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.97 E-value=0.00092 Score=61.31 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
++++.|+|||||||+|..++.+++ .+.++|++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~-----~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG-----LQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC-----CCcEeCcCCC
Confidence 689999999999999999999874 2556776543
No 250
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.96 E-value=0.00068 Score=65.94 Aligned_cols=35 Identities=34% Similarity=0.515 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|-|+|.+||||||+++.|.+.+|+ .+||+|.+-
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~-------~viDaD~ia 36 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHI-------EVIDADLVV 36 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEehHHHH
Confidence 37899999999999999999988755 899988764
No 251
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.00056 Score=73.06 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=52.7
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+--.|||++|.++++.+-+...+.+.++. .+-++.++++|+-|+||||+|+.+|+.+.
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~----------------------~ri~hAYlfsG~RGvGKTt~Ari~AkalN 63 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALEN----------------------GRIAHAYLFSGPRGVGKTTIARILAKALN 63 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHh----------------------CcchhhhhhcCCCCcCchhHHHHHHHHhc
Confidence 34579999999999999999999998886 45567899999999999999999999997
Q ss_pred c
Q 015774 238 W 238 (400)
Q Consensus 238 ~ 238 (400)
+
T Consensus 64 C 64 (515)
T COG2812 64 C 64 (515)
T ss_pred C
Confidence 6
No 252
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.96 E-value=0.0052 Score=58.82 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++=++|..||||||+++.+- .+| +.+||+|.+-
T Consensus 3 iVGLTGgiatGKStVs~~f~-~~G-------~~vIDaD~va 35 (225)
T KOG3220|consen 3 IVGLTGGIATGKSTVSQVFK-ALG-------IPVIDADVVA 35 (225)
T ss_pred EEEeecccccChHHHHHHHH-HcC-------CcEecHHHHH
Confidence 66789999999999999987 554 4899977543
No 253
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.95 E-value=0.0014 Score=66.02 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=54.6
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
-.+.|||++|++++..+.+..++..-+.. ..-| ..|+-||||+|||+.|..++.+++
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~----------------------~~lp-~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR----------------------RILP-HYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh----------------------cCCc-eEEeeCCCCCcHhHHHHHHHHHhc
Confidence 47899999999999988887777665544 1234 578899999999999999999986
Q ss_pred ccCCCC-CeEEEeCCcccc
Q 015774 238 WSGAAT-NAVVVEADAFKE 255 (400)
Q Consensus 238 ~~~~~~-~avvIdaDefRe 255 (400)
.++-.+ ++.-+++++.|-
T Consensus 83 ~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 83 CEQLFPCRVLELNASDERG 101 (346)
T ss_pred Cccccccchhhhccccccc
Confidence 522222 223346666663
No 254
>PRK13974 thymidylate kinase; Provisional
Probab=96.95 E-value=0.008 Score=56.42 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=24.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+|.+.|++||||||.++.|++.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999883
No 255
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.94 E-value=0.0024 Score=64.01 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.+|+++||.|||||.+|-.||++.+ .+||+|.+-
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~~--------eIIsaDS~Q 38 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGKA--------EIINVDSIQ 38 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC--------cEEeccHHH
Confidence 345899999999999999999999842 699999864
No 256
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.94 E-value=0.0012 Score=61.28 Aligned_cols=42 Identities=14% Similarity=0.312 Sum_probs=35.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
....++++.|+|||||||++..++.... ..+.+++++++|.-
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~ 58 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGL 58 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCC
Confidence 5678999999999999999999998762 34668889998753
No 257
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.94 E-value=0.0019 Score=66.53 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=60.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
..+.+|++.|.|||||||++....... ++.++++|.+-. + +.+..
T Consensus 267 ~~~eiV~~vgfp~sGks~f~a~~~~~~-------~y~~vn~d~lg~----------------~--------~~C~~---- 311 (422)
T KOG2134|consen 267 GHGEIVVAVGFPGSGKSTFAAKRVVPN-------GYKIVNADTLGT----------------P--------QNCLL---- 311 (422)
T ss_pred CCCcEEEEEecCCCCcchhhhhhcccC-------ceeEeecccCCC----------------c--------hhhHH----
Confidence 445899999999999999999877665 458899887641 1 11211
Q ss_pred HHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
...+++..|.+||+|+|......++.+++.+++
T Consensus 312 ~~~e~l~~~~sVvidnt~pd~~sr~~~~~~a~e 344 (422)
T KOG2134|consen 312 ANAEALKHGKSVVIDNTNPDAESRKYYLDCATE 344 (422)
T ss_pred HHHHHhhcccEEeeCCCCcchHHHHHHhhhHHH
Confidence 334589999999999999999999999887664
No 258
>PRK13976 thymidylate kinase; Provisional
Probab=96.93 E-value=0.0064 Score=57.54 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=49.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCC-C-CCeEEE-eCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGA-A-TNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASS 289 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~-~-~~avvI-daDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~ 289 (400)
+|.+-|.-||||||.++.|++.+ +.. + .++++. .+..-.-...+++.+.+.... ++ .+....+-.. ......
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L--~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~-~~-~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYL--SDIYGENNVVLTREPGGTSFNELVRGLLLSLKNL-DK-ISELLLFIAMRREHFVK 77 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCC-CH-HHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998 322 2 133322 111100112344444332111 11 1111221211 222345
Q ss_pred HHHHHHhCCCcEEEECcC
Q 015774 290 LLVTALNEGRDVIMDGTL 307 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~ 307 (400)
++..++++|..||.|--.
T Consensus 78 ~I~p~l~~G~~VI~DRy~ 95 (209)
T PRK13976 78 VILPALLQGKIVICDRFI 95 (209)
T ss_pred HHHHHHHCCCEEEECCCc
Confidence 688899999999999543
No 259
>PRK07429 phosphoribulokinase; Provisional
Probab=96.93 E-value=0.0014 Score=66.35 Aligned_cols=43 Identities=28% Similarity=0.377 Sum_probs=35.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
...|.+|-|+|++||||||+++.|+..++- .++.++..|+|..
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~----~~~~vi~~Dd~~~ 47 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGE----ELVTVICTDDYHS 47 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhcc----CceEEEEeccccc
Confidence 467899999999999999999999999852 2456788888863
No 260
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.93 E-value=0.0014 Score=72.62 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=42.4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+.+||+.|+++++.+.+......+..- +. ..+.|. +++.|+||+||||+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~---i~----------------~~~~~s-lLL~GPpGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRA---IK----------------ADRVGS-LILYGPPGVGKTTLARIIANHTR 77 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHH---Hh----------------cCCCce-EEEECCCCCCHHHHHHHHHHHhc
Confidence 56789999999999887665432222222 11 023344 47899999999999999999874
No 261
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.91 E-value=0.001 Score=59.61 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+++|.|+||+|||+++..++... -.++.++++++.++-.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~--~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG--LARGEPGLYVTLEESP 39 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCH
Confidence 47899999999999999988775 2456788899876543
No 262
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.91 E-value=0.0025 Score=67.84 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.|.-||+.||||+|||++|+.+|.+++. +.+.++...
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~-----~~~~l~~~~ 294 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQL-----PLLRLDVGK 294 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEEhHH
Confidence 56888999999999999999999999864 556666543
No 263
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.90 E-value=0.0014 Score=60.36 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...++++.|+|||||||++..++.... ..+.++++|+++.|.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~~~ 52 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEGLS 52 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCC
Confidence 5678999999999999999999987752 345678999998743
No 264
>PRK13768 GTPase; Provisional
Probab=96.89 E-value=0.0012 Score=63.92 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=33.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.++++.|++||||||++..++..+ ...+.++.+|+.|.-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l--~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL--EEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH--HhcCCceEEEECCCc
Confidence 5689999999999999999999887 456778889887753
No 265
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=96.88 E-value=0.0025 Score=69.84 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
.+|.+.||+||||||+++.|+++++| .++|+|.+..
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~-------~~~~~~~~~~ 478 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGY-------HYLDSGALYR 478 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCC-------eEecHHHhhh
Confidence 37888999999999999999999977 6898877663
No 266
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.0015 Score=66.86 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=49.4
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.-||++|.++++++.++..+...+.. .+-|+.+|+.|++|+||+|+|..+|+.+-+
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~----------------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRS----------------------GRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHc----------------------CCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 36899999999999999988876665 567899999999999999999999999855
No 267
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.0032 Score=61.01 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=39.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccC-------------------CCCCeEEEeCCccccch
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG-------------------AATNAVVVEADAFKETD 257 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~-------------------~~~~avvIdaDefRe~D 257 (400)
+-|+.+|+.||||+||||+|..||+.++.+. .+++++.+++.+-+..+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~ 88 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID 88 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc
Confidence 4677999999999999999999999997432 24688888888877643
No 268
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.84 E-value=0.0017 Score=56.01 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=47.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHH
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTA 294 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~A 294 (400)
++|.|+||+|||++++.+++.++. +...+........ ..|.+.-..... . ..+....+.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~----~dl~g~~~~~~~-~---------~~~~~~~l~~a 62 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTE----EDLIGSYDPSNG-Q---------FEFKDGPLVRA 62 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTH----HHHHCEEET-TT-T---------TCEEE-CCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccc----ccceeeeeeccc-c---------ccccccccccc
Confidence 689999999999999999999953 5656654443321 223221000000 0 00001112225
Q ss_pred HhCCCcEEEECcCCCh-HHHHHHHHHH
Q 015774 295 LNEGRDVIMDGTLSWV-PFVEQTIAMA 320 (400)
Q Consensus 295 L~eG~dVIIDgT~~~~-~~re~~i~~a 320 (400)
+.+|.-+++|..+... .....+...+
T Consensus 63 ~~~~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 63 MRKGGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp HHEEEEEEESSCGG--HHHHHTTHHHH
T ss_pred ccceeEEEECCcccCCHHHHHHHHHHH
Confidence 5588999999877543 3333444444
No 269
>PLN02422 dephospho-CoA kinase
Probab=96.83 E-value=0.00099 Score=64.44 Aligned_cols=33 Identities=36% Similarity=0.404 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|+|++||||||+++.|+ ++|+ .++|+|.+-
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~-------~~idaD~~~ 35 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGI-------PVVDADKVA 35 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCC-------eEEehhHHH
Confidence 68999999999999999999 5654 899988764
No 270
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.82 E-value=0.0035 Score=69.36 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=50.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
.+-+|+++.+-...+..+.+.++-... . ..+...+ .-..|.-+++.|+||+||||+++.+++.++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~--~------~~~~~~~--gi~~~~giLL~GppGtGKT~laraia~~~~~---- 238 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMK--H------PELFEHL--GIEPPKGVLLYGPPGTGKTLLAKAVANEAGA---- 238 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhh--C------HHHHHhc--CCCCCceEEEECCCCCChHHHHHHHHHHhCC----
Confidence 446788888888777777777663100 0 0000001 1256778999999999999999999999853
Q ss_pred CCeEEEeCCc
Q 015774 243 TNAVVVEADA 252 (400)
Q Consensus 243 ~~avvIdaDe 252 (400)
..+.+++.+
T Consensus 239 -~~i~i~~~~ 247 (733)
T TIGR01243 239 -YFISINGPE 247 (733)
T ss_pred -eEEEEecHH
Confidence 556676443
No 271
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.011 Score=59.70 Aligned_cols=126 Identities=21% Similarity=0.251 Sum_probs=69.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH---HHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS---TDAA 287 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~---~~~a 287 (400)
+.-+||++||.||||||+...+....+- .....+|. -.||+ +.++... .+-..+.++ +.--
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~---~~~~HIlT-----IEDPI-E~vh~sk-------kslI~QREvG~dT~sF 187 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINK---HKAKHILT-----IEDPI-EYVHESK-------KSLINQREVGRDTLSF 187 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhc---cCCcceEE-----ecCch-Hhhhcch-------HhhhhHHHhcccHHHH
Confidence 3449999999999999999999888742 12223332 13454 2332210 000000010 1111
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhhhhhhhhccCCeeeccCCchhhhhcccccccchh
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEED 356 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~ 356 (400)
...+..||.+.=|||+-|-+....-..-.+..|+--| -+++.- -..+.-..+++.-+-|++.++.
T Consensus 188 ~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGH---LV~~TL-HT~sA~~ti~RiidvFp~~ek~ 252 (353)
T COG2805 188 ANALRAALREDPDVILVGEMRDLETIRLALTAAETGH---LVFGTL-HTNSAAKTIDRIIDVFPAEEKD 252 (353)
T ss_pred HHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCC---EEEEec-ccccHHHHHHHHHHhCChhhhH
Confidence 2356679999999999999998775544444443211 122211 1112234677777777775543
No 272
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0015 Score=60.30 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.-+|+|+|++||||||+|-+|.+.+ -+.+.-...+|+|.+|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L--~qrgkl~Y~LDGDNvR 71 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQAL--LQRGKLTYILDGDNVR 71 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHH--HhcCceEEEecCcccc
Confidence 456799999999999999999999988 3456667899999988
No 273
>PLN02772 guanylate kinase
Probab=96.78 E-value=0.00083 Score=69.64 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=50.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQ 274 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg--~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~ 274 (400)
...+++++||+|+||||+++.|.+++. + +.++.++.+++.++|. .+...|. +..
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe-------~~i~~g~---FlE 203 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVME-------KEIKDGK---FLE 203 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHH-------HHHHhCc---cce
Confidence 456899999999999999999988652 1 1122233444333332 2222111 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcC
Q 015774 275 TAELVHQSSTDAASSLLVTALNEGRDVIMDGTL 307 (400)
Q Consensus 275 aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~ 307 (400)
.+ .+|...|....+.++.++++|+++|+|-..
T Consensus 204 ~~-e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~ 235 (398)
T PLN02772 204 FA-SVHGNLYGTSIEAVEVVTDSGKRCILDIDV 235 (398)
T ss_pred ee-eecCccccccHHHHHHHHHhCCcEEEeCCH
Confidence 11 123333444455677789999999999543
No 274
>PHA00729 NTP-binding motif containing protein
Probab=96.75 E-value=0.0011 Score=64.13 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..-|++.|+||+||||+|..|+.+++
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999863
No 275
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0025 Score=66.22 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=46.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccccc-CCCCE-EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALS-ERSPV-LLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~-~~~P~-lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+|.+|.+...+|+.+.+-|- .++|.|--.. -+.|+ -+||.||||+|||-+|+++|.+.+
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVv-------------lPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVV-------------LPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHh-------------hhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 4689999999988887665432 3455554433 24565 799999999999999999999974
No 276
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.74 E-value=0.0088 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.680 Sum_probs=23.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+++|.|+||+||||+++.++..+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 45588999999999999999999987
No 277
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.72 E-value=0.003 Score=67.83 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHH
Q 015774 153 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDI 232 (400)
Q Consensus 153 ~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~L 232 (400)
.-...-++.|+|++-+++.-+.+--..+.+|..-..+. .+.-...+.||+||+|+||||+++.|
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~----------------~~~l~~~iLLltGPsGcGKSTtvkvL 130 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEF----------------TPKLGSRILLLTGPSGCGKSTTVKVL 130 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHh----------------ccCCCceEEEEeCCCCCCchhHHHHH
Confidence 44467899999999988866655555555555521111 11234569999999999999999999
Q ss_pred HHhccc
Q 015774 233 MKESFW 238 (400)
Q Consensus 233 A~~lg~ 238 (400)
++.+|.
T Consensus 131 skelg~ 136 (634)
T KOG1970|consen 131 SKELGY 136 (634)
T ss_pred HHhhCc
Confidence 999976
No 278
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.72 E-value=0.0016 Score=70.89 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+.+|.|+|+|||||||+++.|+..+. ++.+|.-|.|.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp------~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC------CcEEEEEccee
Confidence 4678999999999999999999998872 45788888885
No 279
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.0024 Score=63.28 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=43.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+|+++++++.+++.+...++. ++-|+++++.|++|.||||+|..+++.+.+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~----------------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK----------------------NRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc----------------------CCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 688999998888887777654 567889999999999999999999998743
No 280
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0079 Score=61.93 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
-++|.=+||.||||+|||-+|+++|++.. ...+.+.+.+|-+ +.+. +..+++.
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrvvgSElVq-----KYiG-----------------EGaRlVR 234 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRVVGSELVQ-----KYIG-----------------EGARLVR 234 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEeccHHHHH-----HHhc-----------------cchHHHH
Confidence 37899999999999999999999999973 2344444333210 1111 1134556
Q ss_pred HHHHHHHhCCCcEEEE
Q 015774 289 SLLVTALNEGRDVIMD 304 (400)
Q Consensus 289 ~lie~AL~eG~dVIID 304 (400)
.+.+-|-..-=++|+-
T Consensus 235 elF~lArekaPsIIFi 250 (406)
T COG1222 235 ELFELAREKAPSIIFI 250 (406)
T ss_pred HHHHHHhhcCCeEEEE
Confidence 6666677777777764
No 281
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.71 E-value=0.0015 Score=63.12 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=25.7
Q ss_pred EEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 217 MGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 217 L~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.|++||||||+++.+.+.+ +..+.++.+||-|=
T Consensus 1 ViGpaGSGKTT~~~~~~~~~--~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL--ESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH--TTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHH--HhccCCceEEEcch
Confidence 58999999999999999988 56677888888663
No 282
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.69 E-value=0.0051 Score=59.94 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=58.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccchHHHHHHhcCCCCChhhH-hHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSSKGHHDDMLQ-TAELVHQSSTDAASSLL 291 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~D~irk~L~~~G~~~d~~~-aa~~v~~~~~~~ae~li 291 (400)
+++++|.|-|||||.|.+|...+- +.+ +..+.|.-|+ .+ +.++...+.. ..+ ..+-....+.+
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~--~~~~K~~v~ii~de---------sl-g~~~ns~y~~s~~E---K~lRg~L~S~v 67 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALK--ERGTKQSVRIIDDE---------SL-GIEKNSNYGDSQAE---KALRGKLRSAV 67 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHH--hhcccceEEEechh---------hc-CCCCcccccccHHH---HHHHHHHHHHH
Confidence 789999999999999999999883 333 3255554332 12 1111111111 011 22223445567
Q ss_pred HHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 292 VTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
++.+..|.-||+|+-+.-.+||=++-=+++
T Consensus 68 ~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak 97 (281)
T KOG3062|consen 68 DRSLSKGDIVIVDSLNYIKGFRYELYCEAK 97 (281)
T ss_pred HhhcccCcEEEEecccccccceeeeeeehh
Confidence 889999999999999888888765544443
No 283
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.68 E-value=0.0026 Score=59.56 Aligned_cols=42 Identities=12% Similarity=0.314 Sum_probs=35.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...++++.|+||+||||++..++... ...+.++++++++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e~~ 62 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTEGL 62 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 567899999999999999999999865 234568899999844
No 284
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.68 E-value=0.0017 Score=57.81 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=25.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
...+|+|.|.+||||||+++.+++.+|+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999999999976
No 285
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.68 E-value=0.0012 Score=70.57 Aligned_cols=76 Identities=13% Similarity=0.180 Sum_probs=50.8
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHH
Q 015774 152 TKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKD 231 (400)
Q Consensus 152 ~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~ 231 (400)
..+...+++.....+|+++.+-...+..+.+.++.- +.. ..+.... .-+.|.-+||.||||+|||++++.
T Consensus 166 ~~~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp--~~~------~~l~~~~--gl~~p~GILLyGPPGTGKT~LAKA 235 (512)
T TIGR03689 166 AEVEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELP--FLH------PELYREY--DLKPPKGVLLYGPPGCGKTLIAKA 235 (512)
T ss_pred hHHhcceeecCCCCCHHHcCChHHHHHHHHHHHHHH--hhC------HHHHHhc--cCCCCcceEEECCCCCcHHHHHHH
Confidence 345566677777788898887776666666666520 110 0010110 124567799999999999999999
Q ss_pred HHHhcc
Q 015774 232 IMKESF 237 (400)
Q Consensus 232 LA~~lg 237 (400)
+++.++
T Consensus 236 lA~eL~ 241 (512)
T TIGR03689 236 VANSLA 241 (512)
T ss_pred HHHhhc
Confidence 999984
No 286
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.67 E-value=0.0026 Score=59.21 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+|+++|++||||||++..|+..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998887
No 287
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.65 E-value=0.0051 Score=64.59 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=44.9
Q ss_pred hhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774 170 VTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (400)
Q Consensus 170 v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI 248 (400)
|++.+.++++++.-+- .|+.... ...+. ..-.|.-|+|.||||+||||+++.|+..+++ +.+.+
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~---------~~~~~-~e~~p~~ILLiGppG~GKT~lAraLA~~l~~-----~fi~v 78 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQL---------NEELK-DEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKV 78 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhcc---------ccccc-cccCCceEEEECCCCCCHHHHHHHHHHHhCC-----eEEEe
Confidence 6677777777765554 3333211 00111 1235677999999999999999999999954 45555
Q ss_pred eCCccc
Q 015774 249 EADAFK 254 (400)
Q Consensus 249 daDefR 254 (400)
++-.|.
T Consensus 79 dat~~~ 84 (441)
T TIGR00390 79 EATKFT 84 (441)
T ss_pred ecceee
Confidence 544453
No 288
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.65 E-value=0.0021 Score=63.26 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+|-|+|++||||||+++.|+..++- .++.+|..|+|..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~----~~~~vi~~Dd~~~ 38 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS----DLVTVICLDDYHS 38 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC----CceEEEECccccc
Confidence 4678999999999999999988731 2556888898864
No 289
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.62 E-value=0.0025 Score=55.00 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=31.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
|++.|.+|+||||++..++..+ .+.+.++.++|+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l--~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYL--AEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCc
Confidence 7899999999999999999887 45566789999986
No 290
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.008 Score=63.15 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=26.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-+.|..+|+.||||+|||.+|++++..+++
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~ 302 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRS 302 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCC
Confidence 367779999999999999999999998754
No 291
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.61 E-value=0.0031 Score=63.82 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+-.|+++.+-++.++.+.+.++-. +.. ......+ .-..|.-+++.|+||+||||+++.+++.++
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~--~~~------~~~~~~~--g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELP--LKH------PELFEEV--GIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHH--hcC------HHHHHhc--CCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 33456677777677666666666521 000 0000000 124677899999999999999999999985
No 292
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.60 E-value=0.0018 Score=66.95 Aligned_cols=33 Identities=42% Similarity=0.533 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|.|+|.+||||||+++.|++ +|+ .+||+|.+-
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~-------~vidaD~i~ 35 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGA-------VVVDADVLA 35 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC-------eEEehHHHH
Confidence 589999999999999999987 655 899999875
No 293
>PRK08116 hypothetical protein; Validated
Probab=96.60 E-value=0.018 Score=56.38 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.-+++.|+||+|||.++..+++.+ ...+..+++++..+|
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~~~l 153 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNFPQL 153 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEHHHH
Confidence 3468999999999999999999987 334567778876554
No 294
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0042 Score=64.62 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-+.+.+||+.++++++.+-. +.+- .++-+-+. .....-.++-||||+||||+|+.|+...
T Consensus 13 PLA~rmRP~~lde~vGQ~HL-------lg~~-----------~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~ 72 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHL-------LGEG-----------KPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTT 72 (436)
T ss_pred ChHHHhCCCCHHHhcChHhh-------hCCC-----------chHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhh
Confidence 35678999999999987642 2110 01111111 2333456789999999999999999998
Q ss_pred cccCCCCCeEEEeCCc
Q 015774 237 FWSGAATNAVVVEADA 252 (400)
Q Consensus 237 g~~~~~~~avvIdaDe 252 (400)
+. ....+++=.
T Consensus 73 ~~-----~f~~~sAv~ 83 (436)
T COG2256 73 NA-----AFEALSAVT 83 (436)
T ss_pred CC-----ceEEecccc
Confidence 53 566666543
No 295
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.59 E-value=0.0053 Score=59.60 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-+++.|+||+||||+|+.|+..+|. ..+.++.+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~-----~~~~i~~~~ 56 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDR-----PVMLINGDA 56 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC-----CEEEEeCCc
Confidence 4568999999999999999998854 677776543
No 296
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.0032 Score=64.16 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=49.3
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+.+|..|.+++++..+.+.|...+.. .+-|+.+|+.|++|+||||+|..+++.+.+
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~----------------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYRE----------------------GKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHc----------------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 46888999999999998888877765 567999999999999999999999999854
No 297
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0029 Score=70.20 Aligned_cols=75 Identities=24% Similarity=0.259 Sum_probs=56.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
-.|++|.+=+++|+.+.+.|+=+|. +..|. . ...+-|.=+||+||||+|||-+|+++|.+-|. +
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKN------P~~Y~---~--lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-----P 371 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKN------PEQYQ---E--LGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----P 371 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcC------HHHHH---H--cCCcCcCceEEECCCCCcHHHHHHHHhcccCC-----c
Confidence 5799999999999999998874322 11111 0 01467899999999999999999999998754 6
Q ss_pred eEEEeCCcccc
Q 015774 245 AVVVEADAFKE 255 (400)
Q Consensus 245 avvIdaDefRe 255 (400)
.+-+++-+|-+
T Consensus 372 F~svSGSEFvE 382 (774)
T KOG0731|consen 372 FFSVSGSEFVE 382 (774)
T ss_pred eeeechHHHHH
Confidence 67777777764
No 298
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0034 Score=60.38 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|-+=||.||||||+++.||+++|| .++|+-.+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~-------~yldTGamY 39 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGF-------HYLDTGAMY 39 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCC-------CeecccHHH
Confidence 68899999999999999999999987 788755443
No 299
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.55 E-value=0.014 Score=55.07 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+|.+-|..||||||+++.|++.+++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~ 25 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGM 25 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999854
No 300
>PLN02842 nucleotide kinase
Probab=96.55 E-value=0.013 Score=62.61 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=26.4
Q ss_pred EEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 216 LMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 216 LL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+|.|+|||||||+++.|++.+++ .+|+++++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~-------~hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGL-------VHISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCC-------CEEEccHH
Confidence 47899999999999999999955 78876653
No 301
>PRK04296 thymidine kinase; Provisional
Probab=96.55 E-value=0.0027 Score=58.74 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=29.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
.+++++|+||+||||++..++.++ ...+..++++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEec
Confidence 589999999999999999999987 344567777754
No 302
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.55 E-value=0.002 Score=71.03 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|.|+|||||||+++.||+.+|| .++++..+.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~-------~~~~~g~~~ 36 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGY-------AYLDTGAMY 36 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEeecCcEe
Confidence 6899999999999999999999976 677766655
No 303
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.55 E-value=0.011 Score=57.47 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=60.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCCh--hhHhHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD--MLQTAELVHQSSTDAASS 289 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d--~~~aa~~v~~~~~~~ae~ 289 (400)
|+|.++..-=|+||||.+..|+..+ ..+|..+.+||+|-=+....|++.-...|..++ ..+.+.. ...++.
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~l--a~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e-----~~~l~~ 74 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASEL--AARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADE-----LTILED 74 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHH--HHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccc-----hhhHHH
Confidence 7788999999999999999999998 567889999999998865555432222221111 0011111 123344
Q ss_pred HHHHHHhCCCcEEEECcCCChH
Q 015774 290 LLVTALNEGRDVIMDGTLSWVP 311 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~ 311 (400)
..+.+-..|+++||-+|.+...
T Consensus 75 ~~e~a~~~~~d~VlvDleG~as 96 (231)
T PF07015_consen 75 AYEAAEASGFDFVLVDLEGGAS 96 (231)
T ss_pred HHHHHHhcCCCEEEEeCCCCCc
Confidence 5555666788877777765444
No 304
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.55 E-value=0.02 Score=64.03 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=48.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774 169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV 247 (400)
Q Consensus 169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv 247 (400)
+|++.+.+...++..+..++. .+ . ....|. .+++.||||+|||++|+.||+.++. ..+.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~----------gl----~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~ 518 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA----------GL----G-HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLR 518 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc----------cc----c-CCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEE
Confidence 456666666666666654222 11 0 123343 6899999999999999999999853 6788
Q ss_pred EeCCccccchHH
Q 015774 248 VEADAFKETDVI 259 (400)
Q Consensus 248 IdaDefRe~D~i 259 (400)
+|..+|.+.+..
T Consensus 519 id~se~~~~~~~ 530 (758)
T PRK11034 519 FDMSEYMERHTV 530 (758)
T ss_pred eechhhcccccH
Confidence 888877654443
No 305
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.013 Score=64.01 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+|.-+|+-||||+|||.+|+++|.++|. +.+-|++-++-
T Consensus 220 v~PprGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~isApeiv 260 (802)
T KOG0733|consen 220 VRPPRGVLLHGPPGCGKTSLANAIAGELGV-----PFLSISAPEIV 260 (802)
T ss_pred CCCCCceeeeCCCCccHHHHHHHHhhhcCC-----ceEeecchhhh
Confidence 368889999999999999999999999965 55556654443
No 306
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.011 Score=55.29 Aligned_cols=25 Identities=40% Similarity=0.522 Sum_probs=23.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+++++|.||+||||+.+.+.+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999999999887
No 307
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0032 Score=68.36 Aligned_cols=76 Identities=25% Similarity=0.274 Sum_probs=58.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
.-+|.+|.+.+++|+.++++|+-++.-. +|.- ...+-|.-+++.||||+|||.+|+++|.+-+.
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~------ky~~-----lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V----- 209 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPK------KYQA-----LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV----- 209 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCch------hhHh-----cccccccceeEecCCCCCcHHHHHHHhcccCC-----
Confidence 3689999999999999999998754322 1210 11367999999999999999999999988743
Q ss_pred CeEEEeCCcccc
Q 015774 244 NAVVVEADAFKE 255 (400)
Q Consensus 244 ~avvIdaDefRe 255 (400)
+...+++-+|=+
T Consensus 210 PFf~iSGS~FVe 221 (596)
T COG0465 210 PFFSISGSDFVE 221 (596)
T ss_pred Cceeccchhhhh
Confidence 667777777753
No 308
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.53 E-value=0.0045 Score=65.08 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=49.3
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc
Q 015774 160 AATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS 239 (400)
Q Consensus 160 ~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~ 239 (400)
+......|.+|-+-+..+..+.+.++-. +.. ..+...+ .-..|.-++|.|+||+|||++|+.++.+++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lp---l~~-----p~~~~~~--gi~~p~gVLL~GPPGTGKT~LAraIA~el~~- 243 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELP---LTH-----PELYDDI--GIKPPKGVILYGPPGTGKTLLAKAVANETSA- 243 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhh---hhC-----HHHHHhc--CCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-
Confidence 3444467888877666666666666531 100 0000001 1256778999999999999999999999843
Q ss_pred CCCCCeEEEeCCcc
Q 015774 240 GAATNAVVVEADAF 253 (400)
Q Consensus 240 ~~~~~avvIdaDef 253 (400)
..+.+++.++
T Consensus 244 ----~fi~V~~seL 253 (438)
T PTZ00361 244 ----TFLRVVGSEL 253 (438)
T ss_pred ----CEEEEecchh
Confidence 4555554443
No 309
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.52 E-value=0.013 Score=70.61 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=80.6
Q ss_pred hhhhhccccccchhhhhhhcCcchhhhhhHH--HHHHHHhhh--hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccc-
Q 015774 125 ILSYFTFHWSHASLMISQVLSVESEKKTKLK--DFIMAATRK--QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCT- 199 (400)
Q Consensus 125 ~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~r~--~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~- 199 (400)
.++.+.+.-+|.+.|...++|.....|.++- .-+++-+++ ..++-.+-.+--+++|...... |..++-+ |.
T Consensus 1534 ~I~~~~~~lt~~~~l~~n~~gyq~~eqpG~~YLRyL~d~~qk~LmnYefn~~~laEr~IflA~yq~---It~Sq~~-~~~ 1609 (2281)
T CHL00206 1534 RIDQILLSLTHSDHLSKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNTSCLAERRIFLAHYQT---ITYSQTS-CGA 1609 (2281)
T ss_pred hhhhhhhccccccccccccccccccccccHHHHHHHHHHHhcccccccccccchHhhHhHHHHHhH---Hhccccc-ccc
Confidence 4678899999999999999999877665431 122333333 2333344456567777777776 5432211 21
Q ss_pred -ccc-----ccc--cccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 200 -DVM-----VPA--ALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 200 -~v~-----~pl--~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+. .|+ ......|.-|||.||||+|||.+|++||.+.+. +.+.|++++|-
T Consensus 1610 n~~~~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-----PFIsISgs~fl 1667 (2281)
T CHL00206 1610 NSFHFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-----PFITVFLNKFL 1667 (2281)
T ss_pred ccccCcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-----ceEEEEHHHHh
Confidence 111 122 222367889999999999999999999999854 77788877775
No 310
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.011 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=24.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
..+|.++|+-|+||||+|+.|+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCC
Confidence 458999999999999999999999964
No 311
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.51 E-value=0.0026 Score=64.57 Aligned_cols=34 Identities=32% Similarity=0.502 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-|+|.|+||+||||+++.||+.++| ..+.|+.+.
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~-----~~~rV~~~~ 99 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNW-----PCVRVNLDS 99 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCC-----CeEEEEecC
Confidence 3899999999999999999999987 555665443
No 312
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.018 Score=62.83 Aligned_cols=67 Identities=25% Similarity=0.292 Sum_probs=48.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
..|.-|||+||||+|||-+|+++|++.|. |.+.|-+-+ |.. ..+ .++.+.+..
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~-----NFisVKGPE----------LlN-----------kYV-GESErAVR~ 595 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGA-----NFISVKGPE----------LLN-----------KYV-GESERAVRQ 595 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccC-----ceEeecCHH----------HHH-----------HHh-hhHHHHHHH
Confidence 56899999999999999999999999854 655553211 111 112 345567778
Q ss_pred HHHHHHhCCCcEEE
Q 015774 290 LLVTALNEGRDVIM 303 (400)
Q Consensus 290 lie~AL~eG~dVII 303 (400)
+..+|.+.---||+
T Consensus 596 vFqRAR~saPCVIF 609 (802)
T KOG0733|consen 596 VFQRARASAPCVIF 609 (802)
T ss_pred HHHHhhcCCCeEEE
Confidence 88889888877776
No 313
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.50 E-value=0.003 Score=57.94 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=49.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
....++++|++||||||+++.|+..+. . ..+.+.++ .+++.......-++... ........ ......
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~--~-~~~~i~ied~~E~~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~ 91 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP--P-DERIITIEDTAELQLPHPNWVRLVTR--PGNVEGSG-------EVTMAD 91 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC--C-CCCEEEECCccccCCCCCCEEEEEEe--cCCCCCCC-------ccCHHH
Confidence 467899999999999999999998763 2 23444442 22222100000000000 00000000 011223
Q ss_pred HHHHHHhCCCcEEEECcCCChHH
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPF 312 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~ 312 (400)
++..++..+-|+|+-|....+.-
T Consensus 92 ~l~~~lR~~pd~i~igEir~~ea 114 (186)
T cd01130 92 LLRSALRMRPDRIIVGEVRGGEA 114 (186)
T ss_pred HHHHHhccCCCEEEEEccCcHHH
Confidence 55668888899999999988653
No 314
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0066 Score=63.79 Aligned_cols=86 Identities=16% Similarity=0.172 Sum_probs=53.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
..|+-++-|++.|+.+..=+.+ ..+ .......+- ..=..=.||-||||+||||++.++|..+++ +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~---F~k-----~k~~YkrvG--kawKRGYLLYGPPGTGKSS~IaAmAn~L~y-----d 262 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDD---FIK-----GKDFYKRVG--KAWKRGYLLYGPPGTGKSSFIAAMANYLNY-----D 262 (457)
T ss_pred CCccccccChhHHHHHHHHHHH---HHh-----cchHHHhcC--cchhccceeeCCCCCCHHHHHHHHHhhcCC-----c
Confidence 4566666666666654433333 332 112222221 111236899999999999999999999976 7
Q ss_pred eEEEeCCccccchHHHHHHhc
Q 015774 245 AVVVEADAFKETDVIYRALSS 265 (400)
Q Consensus 245 avvIdaDefRe~D~irk~L~~ 265 (400)
+.-++--+.+..+.+++-|..
T Consensus 263 IydLeLt~v~~n~dLr~LL~~ 283 (457)
T KOG0743|consen 263 IYDLELTEVKLDSDLRHLLLA 283 (457)
T ss_pred eEEeeeccccCcHHHHHHHHh
Confidence 777776666655566665543
No 315
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.017 Score=59.10 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
-..+||+.||||+||||+.++||+.+.+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 4569999999999999999999999865
No 316
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.46 E-value=0.0027 Score=56.82 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=30.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.+.|++||||||++..++..+ ...+.++.+++.|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~--~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL--RARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEeCC
Confidence 6788999999999999999887 44566788888884
No 317
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.011 Score=61.85 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++..++++.|.+||||||+++.|..-+
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~ 373 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLY 373 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhccc
Confidence 567799999999999999999998776
No 318
>PF13173 AAA_14: AAA domain
Probab=96.45 E-value=0.0035 Score=53.97 Aligned_cols=39 Identities=26% Similarity=0.507 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.++++.|+.|+||||+++.+++.+. ...+.+.++.|+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPR 41 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence 5789999999999999999999873 23467888877654
No 319
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.42 E-value=0.0031 Score=65.34 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=35.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-+.|.+++|-||||+|||.+++.+++++|. +.+.+++-++-
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~-----~~i~vsa~eL~ 185 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI-----EPIVMSAGELE 185 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-----CeEEEEHHHhh
Confidence 478999999999999999999999999965 77888765443
No 320
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.41 E-value=0.0024 Score=56.55 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=25.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
...|.+++|.|++|+||||+.+++...+.- .+.-.+.++.+..
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~--~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLAE--RGGYVISINCDDS 63 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHHH--HT--EEEEEEETT
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEEEecc
Confidence 467789999999999999999999888732 1112455665555
No 321
>COG4240 Predicted kinase [General function prediction only]
Probab=96.41 E-value=0.0089 Score=58.53 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=41.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccchHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSS 265 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~D~irk~L~~ 265 (400)
...|.++.++|+.||||||++..|-..+- ..+ ....-++.|+|.-.+..+-.|..
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~--~kg~ert~~lSLDDlYlthadrl~La~ 102 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLA--AKGLERTATLSLDDLYLTHADRLRLAR 102 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHH--HhcccceEEeehhhhhcchHHHHHHHH
Confidence 35699999999999999999998877662 222 36788999999865554444433
No 322
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.41 E-value=0.0065 Score=56.92 Aligned_cols=40 Identities=18% Similarity=0.409 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
|..|.++|++||||||+.+.+...+.. ..+..++..|...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~---~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQ---KYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCc---CCcEEEEeCCcCC
Confidence 678999999999999999999988631 2356667777655
No 323
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.40 E-value=0.0034 Score=49.01 Aligned_cols=34 Identities=15% Similarity=0.405 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
+++++|.+|+||||++..|+..+ .+.+.++..++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l--~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAAL--AKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEC
Confidence 36888999999999999999998 33455666665
No 324
>PF05729 NACHT: NACHT domain
Probab=96.39 E-value=0.0028 Score=54.79 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+++|.|.||+||||++..++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68999999999999999999887
No 325
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.38 E-value=0.026 Score=63.13 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
..+++.||||+||||+|+.|++.++. +.+.++...+
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~ 383 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGV 383 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCc
Confidence 37899999999999999999999964 6677765544
No 326
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.38 E-value=0.017 Score=57.93 Aligned_cols=93 Identities=22% Similarity=0.341 Sum_probs=54.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC------------ccccchHHHHHHhcC---CCCChhh
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD------------AFKETDVIYRALSSK---GHHDDML 273 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD------------efRe~D~irk~L~~~---G~~~d~~ 273 (400)
..+|.+|++.|--||||||+.+.|-..+. .......+|+.| ++|. -+-|+...+. | |+...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~~ppYviNLDPAv~~vpy~aniDIRD-tVkYkEvMkqY~LG-PNGgI 91 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLH--AKKTPPYVINLDPAVRNVPYPANIDIRD-TVKYKEVMKQYQLG-PNGGI 91 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHh--hccCCCeEEeCCHHHhcCCCccCCchhh-hhhHHHHHHHhCCC-CCcch
Confidence 47899999999999999999999988873 344445677755 2221 1223333221 2 22223
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhCCCcEEEEC
Q 015774 274 QTAELVHQSSTDAASSLLVTALNEGRDVIMDG 305 (400)
Q Consensus 274 ~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDg 305 (400)
-++-..+..-...+..+++++..+-..||||+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~~~~~liDT 123 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEEFDYVLIDT 123 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCEEEEcC
Confidence 33333322223344457777766655666664
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.37 E-value=0.012 Score=58.98 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
....++-|.|+|||||||++..+...+. . ..++.+|..|.--
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~--~-~~~~~VI~gD~~t 143 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLK--D-SVPCAVIEGDQQT 143 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc--c-CCCEEEECCCcCc
Confidence 4567899999999999999999999872 1 2477888888644
No 328
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.36 E-value=0.0051 Score=65.01 Aligned_cols=43 Identities=14% Similarity=0.356 Sum_probs=35.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..++++.|+||+||||++.+++... -.++..+++++.++-.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEESR 303 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCCH
Confidence 567899999999999999999998875 2346678999988755
No 329
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.023 Score=57.64 Aligned_cols=115 Identities=22% Similarity=0.302 Sum_probs=72.8
Q ss_pred hhhhHHHHHHHHh-hh---hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccccc-CCCCE-EEEEEcCCCC
Q 015774 150 KKTKLKDFIMAAT-RK---QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALS-ERSPV-LLLMGGGMGA 223 (400)
Q Consensus 150 ~~~~~~~~~~~~~-r~---~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~-~~~P~-lILL~G~PGS 223 (400)
.++||++-+..|. ++ -+|.+|.+=+..|+.+.+-|- + ++--|-... .+.|+ -|||.||||+
T Consensus 111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVI-----L--------PIKFPqlFtGkR~PwrgiLLyGPPGT 177 (439)
T KOG0739|consen 111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVI-----L--------PIKFPQLFTGKRKPWRGILLYGPPGT 177 (439)
T ss_pred hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhhee-----e--------cccchhhhcCCCCcceeEEEeCCCCC
Confidence 3778888777664 33 588999988888877665431 1 121222222 35555 7999999999
Q ss_pred cHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 015774 224 GKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIM 303 (400)
Q Consensus 224 GKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVII 303 (400)
|||.+|+++|-+- |..+++.. ..|-+-+ +. .++..++..+.+-|..+.-++|+
T Consensus 178 GKSYLAKAVATEA-------nSTFFSvS---SSDLvSK------------Wm-----GESEkLVknLFemARe~kPSIIF 230 (439)
T KOG0739|consen 178 GKSYLAKAVATEA-------NSTFFSVS---SSDLVSK------------WM-----GESEKLVKNLFEMARENKPSIIF 230 (439)
T ss_pred cHHHHHHHHHhhc-------CCceEEee---hHHHHHH------------Hh-----ccHHHHHHHHHHHHHhcCCcEEE
Confidence 9999999999885 23444311 1111101 11 23345677788888888888887
Q ss_pred E
Q 015774 304 D 304 (400)
Q Consensus 304 D 304 (400)
-
T Consensus 231 i 231 (439)
T KOG0739|consen 231 I 231 (439)
T ss_pred e
Confidence 5
No 330
>PF13245 AAA_19: Part of AAA domain
Probab=96.35 E-value=0.0034 Score=50.42 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=24.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc--ccCCCCCeEEEe
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESF--WSGAATNAVVVE 249 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg--~~~~~~~avvId 249 (400)
+.+++|.|+|||||||++..++..+- +...+.+++++.
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 44778899999999966666555542 111134566664
No 331
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.34 E-value=0.0043 Score=61.06 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=39.7
Q ss_pred ccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 201 VMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 201 v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
+...+..+-+...++-+.|||||||||+.+.|+.-+.. ..+.+.+++-.+..
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g~~i~~ 68 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDGKDIAS 68 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCCchhh
Confidence 33444444466789999999999999999999997732 35668898877764
No 332
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.33 E-value=0.0047 Score=60.02 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+...+++|+|+||+||||++.+++... -..+..+++++.++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 567899999999999999999987763 23456888998774
No 333
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.33 E-value=0.0031 Score=71.21 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|.+.|+|||||||+++.||+.+++ .+|+++.|.
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~-------~~~~~g~~y 69 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGA-------QCLNTGSFY 69 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHHHH
Confidence 58999999999999999999999976 789877665
No 334
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.31 E-value=0.0041 Score=56.16 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
+|.++|++||||||++..|...+ +..|..+.+|..|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l--~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL--KARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecc
Confidence 47889999999999999999987 4445567777544
No 335
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.30 E-value=0.0081 Score=55.96 Aligned_cols=47 Identities=21% Similarity=0.334 Sum_probs=35.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 258 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~ 258 (400)
...|.+|.++|++||||||+...++..++. +..+.++..|.....|.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~---~~~v~v~~~~~~~~~D~ 65 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD---EVKIAVIEGDVITKFDA 65 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc---CCeEEEEECCCCCcccH
Confidence 346889999999999999999999988632 23556777776544444
No 336
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.30 E-value=0.0044 Score=54.55 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=25.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+...+|+|.|..||||||+++.+++.+|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35689999999999999999999999976
No 337
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.30 E-value=0.012 Score=58.64 Aligned_cols=46 Identities=26% Similarity=0.329 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC----CCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA----TNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~----~~avvIdaDefRe 255 (400)
..|..+++.|+||+||||+++.+++.+.-.... -.++.+++.....
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 355678999999999999999999876210000 1456777766553
No 338
>PRK06851 hypothetical protein; Provisional
Probab=96.29 E-value=0.0067 Score=62.48 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=23.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-..+++|.|+||+||||+++.++...
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 339
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.29 E-value=0.0052 Score=57.70 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..+++|+|+||+||||++..++...- ...+.++++++.+.=
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~-~~~g~~vly~s~E~~ 53 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIA-KKQGKPVLFFSLEMS 53 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCceEEEeCCCC
Confidence 4667999999999999999999887652 122568899987763
No 340
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.043 Score=52.32 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=54.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAAS 288 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae 288 (400)
.+.+|.+-|.=||||||.++.|++.+ .+.+-++++.. +-.-.-...+++.+......-++ .+....+... ..-++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l--~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~-~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERL--EERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSP-KAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCH-HHHHHHHHHHHHHHHH
Confidence 46799999999999999999999998 44444444432 11100012333434331000111 2222222222 34466
Q ss_pred HHHHHHHhCCCcEEEECcC
Q 015774 289 SLLVTALNEGRDVIMDGTL 307 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~ 307 (400)
..+..++++|.-||+|--.
T Consensus 79 ~~i~pal~~g~vVI~DRy~ 97 (208)
T COG0125 79 EVIKPALKEGKVVICDRYV 97 (208)
T ss_pred HHHHHhhcCCCEEEECCcc
Confidence 7888899999999998544
No 341
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.011 Score=64.56 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=47.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCcccccccccc---ccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAA---LSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA 241 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~---~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~ 241 (400)
-.|+++-+.+.+|+.++..|+- ++-.|.. ....+|.-||+.||||+||||+|+.||.+.+.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~-------------p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~--- 494 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEW-------------PLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM--- 494 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhh-------------hhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC---
Confidence 4567777777888888777662 0001111 11368999999999999999999999999854
Q ss_pred CCCeEEEe
Q 015774 242 ATNAVVVE 249 (400)
Q Consensus 242 ~~~avvId 249 (400)
|.+-|.
T Consensus 495 --nFlsvk 500 (693)
T KOG0730|consen 495 --NFLSVK 500 (693)
T ss_pred --Ceeecc
Confidence 555554
No 342
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.015 Score=62.57 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=99.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
.-+|++|-+=++.|..+.+.||=+|. +.++. +...+-|.-||++||||.|||-+|+++|.+-+ .
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkd------P~kft-----rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----V 363 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKD------PTKFT-----RLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----V 363 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcC------cHHhh-----hccCcCCCceEEeCCCCCchhHHHHHhhcccC-----C
Confidence 35799998888899888888775322 11111 01157899999999999999999999998864 3
Q ss_pred CeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcC---------CChHHHH
Q 015774 244 NAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTL---------SWVPFVE 314 (400)
Q Consensus 244 ~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~---------~~~~~re 314 (400)
+..+-++.+|-+ .+.+.| .+.+..+...|-+.---||+-+-. ....+..
T Consensus 364 PFF~~sGSEFdE------m~VGvG----------------ArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~k 421 (752)
T KOG0734|consen 364 PFFYASGSEFDE------MFVGVG----------------ARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAK 421 (752)
T ss_pred CeEeccccchhh------hhhccc----------------HHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHH
Confidence 556666666542 122211 123444666666666666654321 1122334
Q ss_pred HHHHH-HHhhhhhhhhccCCeeeccCCchhhhhcccccccchhhhhhhcccccCCCCcEEEEEEEEecchhHHHHHHHHH
Q 015774 315 QTIAM-ARNVHKSRYRMGVGYKVNEDGTVIENYWEQVKEGEEDYQQKENRQVFSRKPYRIELVGVVCDAYLAVVRGIRYA 393 (400)
Q Consensus 315 ~~i~~-arkvh~~~yr~g~gY~v~~dg~~~E~Ywe~~~e~~~~~~~~~~~~~~~~~py~~~~~~v~~~~~~av~r~~~r~ 393 (400)
+++.. +-+. -.|....|.-+ .+ .-++=|..+. ..-+|=|.-..-+|--|.+.=+.-|.-+
T Consensus 422 qTlNQLLvEm--DGF~qNeGiIv--ig--ATNfpe~LD~-------------AL~RPGRFD~~v~Vp~PDv~GR~eIL~~ 482 (752)
T KOG0734|consen 422 QTLNQLLVEM--DGFKQNEGIIV--IG--ATNFPEALDK-------------ALTRPGRFDRHVTVPLPDVRGRTEILKL 482 (752)
T ss_pred HHHHHHHHHh--cCcCcCCceEE--Ee--ccCChhhhhH-------------HhcCCCccceeEecCCCCcccHHHHHHH
Confidence 43332 2221 12222223221 00 0111111111 2556777777777777888777777777
Q ss_pred HHhc
Q 015774 394 YQYH 397 (400)
Q Consensus 394 ~~t~ 397 (400)
-.++
T Consensus 483 yl~k 486 (752)
T KOG0734|consen 483 YLSK 486 (752)
T ss_pred HHhc
Confidence 6654
No 343
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.27 E-value=0.0063 Score=59.52 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=51.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 291 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li 291 (400)
-+|+++|++||||||+...+..... ....+++.|+ +.++. +.+.... ....... ......+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~--------~~~~~q~-~v~~~~~-------~~~~~~l 142 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQ--------IPGINQV-QVNEKAG-------LTFARGL 142 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceec--------CCCceEE-EeCCcCC-------cCHHHHH
Confidence 4899999999999999999987762 2223444442 22222 1110000 0000000 0122355
Q ss_pred HHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 292 VTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 292 e~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
..++..+-|+|+-|-...+......++.+.
T Consensus 143 ~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~ 172 (264)
T cd01129 143 RAILRQDPDIIMVGEIRDAETAEIAVQAAL 172 (264)
T ss_pred HHHhccCCCEEEeccCCCHHHHHHHHHHHH
Confidence 567788888888888887765555555543
No 344
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.27 E-value=0.0058 Score=58.22 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...++++.|+|||||||++..++... -.++..+++++.++-.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee~~ 61 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEEHP 61 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeCCH
Confidence 567899999999999999999877653 1245678899887643
No 345
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.26 E-value=0.013 Score=52.61 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.++++-+|+||||++..||..+ ...|..+++||.|--+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~l--a~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALAL--AKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHH--HHcCCcEEEEeCCCCC
Confidence 56889999999999999999987 5567899999999765
No 346
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.22 E-value=0.0068 Score=64.96 Aligned_cols=60 Identities=17% Similarity=0.350 Sum_probs=43.3
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHH
Q 015774 153 KLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDI 232 (400)
Q Consensus 153 ~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~L 232 (400)
+|..-+.+.+|++.|+.+++.......+.. . +. ...|.-+++.|+||+||||+|+.+
T Consensus 50 ~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~---a---l~-----------------~~~~~~vLi~Ge~GtGKt~lAr~i 106 (531)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKA---A---LC-----------------GPNPQHVIIYGPPGVGKTAAARLV 106 (531)
T ss_pred hhcchHHHhhCcCCHHHeeCcHHHHHHHHH---H---Hh-----------------CCCCceEEEECCCCCCHHHHHHHH
Confidence 445578899999999999887765444331 1 11 123445688999999999999999
Q ss_pred HHh
Q 015774 233 MKE 235 (400)
Q Consensus 233 A~~ 235 (400)
.+.
T Consensus 107 ~~~ 109 (531)
T TIGR02902 107 LEE 109 (531)
T ss_pred HHH
Confidence 764
No 347
>PRK05642 DNA replication initiation factor; Validated
Probab=96.21 E-value=0.017 Score=55.24 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
..+++.|++|+|||.++..+++.+ ...+..+++++.++|-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHHHHh
Confidence 457899999999999999998876 23456889999888753
No 348
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.007 Score=59.04 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=41.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
-+...++.+.|||||||||++..|+...+++ .-.+-+.+++.++-+..+.-++-
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCHhHHHh
Confidence 4577899999999999999999999887552 22345788888888766544443
No 349
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.01 Score=61.15 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=40.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccc----cCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAAL----SERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~----~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+|.++.+=+.++..+.++|= + ++.+|-.. .-++|.-||+-||||+|||-+|+++|++.|
T Consensus 90 ~f~DIggLe~v~~~L~e~Vi-----l--------Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVI-----L--------PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred ehhhccchHHHHHHHHHHHh-----h--------cccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC
Confidence 67777776666666666543 1 11111111 125788999999999999999999999984
No 350
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.18 E-value=0.0039 Score=58.41 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefR 254 (400)
+.+.++++.|+||+|||+++.+++... -.+ +.++++++.++=.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS-H
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCCH
Confidence 567899999999999999999977553 123 5688999987644
No 351
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=96.17 E-value=0.025 Score=55.14 Aligned_cols=97 Identities=20% Similarity=0.286 Sum_probs=56.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLL 291 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~li 291 (400)
+.+++++|--|+||||++..|+..+ ...+.+++.||+|--...-.-+..+.... . +.....+ .. ......++
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l--~~~g~~vl~iD~D~~n~~~~~~~~l~~~~-~-~i~~~~~-i~---~r~fD~Lv 74 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYK--ASKGQKPLCIDTDPVNATFEGYKALNVRR-L-NIMDGDE-IN---TRNFDALV 74 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHH--HhCCCCEEEEECCCCCchhhhHHhcCCcc-e-ecccCCc-cc---hhhHHHHH
Confidence 4567778999999999999999887 45577899999996542111122222110 0 0000000 00 01123355
Q ss_pred HHHHhCCCcEEEECcCCChHHHHHH
Q 015774 292 VTALNEGRDVIMDGTLSWVPFVEQT 316 (400)
Q Consensus 292 e~AL~eG~dVIIDgT~~~~~~re~~ 316 (400)
+.....+.++|||++...-.-...+
T Consensus 75 e~i~~~~~dvIIDngAs~~~~l~~y 99 (241)
T PRK13886 75 EMIASTEGDVIIDNGASSFVPLSHY 99 (241)
T ss_pred HHHhccCCCEEEECCCcchHHHHHH
Confidence 5566678899999987554444333
No 352
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.17 E-value=0.0076 Score=57.30 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=37.5
Q ss_pred CCCC-EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774 209 ERSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 258 (400)
Q Consensus 209 ~~~P-~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~ 258 (400)
...| ..|-++|+|||||||+..++.+.+. . ..+..+|..|-+...|.
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~--~-~~~~aVI~~Di~t~~Da 56 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALK--D-EYKIAVITGDIYTKEDA 56 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHH--h-hCCeEEEeceeechhhH
Confidence 3466 7899999999999999999888872 2 25778899998885554
No 353
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.16 E-value=0.021 Score=59.19 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCe--EEEeCCccc-cchHHHHHHhcC-CC-CChhhHhHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA--VVVEADAFK-ETDVIYRALSSK-GH-HDDMLQTAELVHQSSTD 285 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~a--vvIdaDefR-e~D~irk~L~~~-G~-~~d~~~aa~~v~~~~~~ 285 (400)
..+=++|.|+||+||||+++.+++.+. .+.+++ +++-.|+=. +-..+++.+... .. ..+ .+...|.....
T Consensus 132 kGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~d---e~~~~~~~v~~ 206 (380)
T PRK12608 132 KGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFD---RPPDEHIRVAE 206 (380)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCC---CCHHHHHHHHH
Confidence 344569999999999999999999872 222232 232223222 112333444221 10 111 11223344455
Q ss_pred HHHHHHHHHHhCCCcEEE
Q 015774 286 AASSLLVTALNEGRDVIM 303 (400)
Q Consensus 286 ~ae~lie~AL~eG~dVII 303 (400)
.+...+++..++|++|||
T Consensus 207 ~~~~~Ae~f~~~GkdVVL 224 (380)
T PRK12608 207 LVLERAKRLVEQGKDVVI 224 (380)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 666788888899998876
No 354
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.16 E-value=0.025 Score=58.80 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.-...|.|.|++||||||+++.|++.+|.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 44668999999999999999999999853
No 355
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.15 E-value=0.004 Score=57.05 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~l 236 (400)
|+|+|.||+||||+++.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 356
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.15 E-value=0.0074 Score=55.06 Aligned_cols=37 Identities=22% Similarity=0.544 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+++++|..||||||+.+.+++. ...+.+..+|-. +|-
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~---~~~~~~~~vI~n-e~g 38 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKR---NRQGERVAVIVN-EFG 38 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH---HTTTS-EEEEEC-STT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH---hcCCceeEEEEc-ccc
Confidence 6899999999999999999952 123456666644 344
No 357
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.14 E-value=0.0051 Score=55.84 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=20.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+.++.||||+||||++..++..+
T Consensus 16 ~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 16 SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 34489999999999999888877776
No 358
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.14 E-value=0.0062 Score=56.52 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=32.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.|.|+|||||||+++.|+..+.. ..+-+.++...+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~ 68 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDI 68 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCEeh
Confidence 467789999999999999999999987631 234566765444
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.14 E-value=0.0078 Score=56.36 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...++++.|+||+||||++..++... -..+.++++++.++-.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~~ 60 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEESR 60 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCCH
Confidence 567899999999999999999877543 1235577888876544
No 360
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.13 E-value=0.007 Score=55.87 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=32.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+..++.+.|++||||||+++.|+..+. ...+.+.++...+.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~ 66 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLT 66 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcc
Confidence 45778999999999999999999998752 12355777665443
No 361
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.12 E-value=0.0086 Score=54.99 Aligned_cols=42 Identities=21% Similarity=0.430 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
..++++||+|+|||.+++.|++.++. +...+.+.+|.-+|..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 47899999999999999999999941 2344678888777764
No 362
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.10 E-value=0.0052 Score=48.09 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.++.|++||||||+..++.--+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999987554
No 363
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.10 E-value=0.0082 Score=57.39 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...++++.|+||+||||++..++... -..+.+++.++.++-.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g~~~~yi~~e~~~ 64 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF--LQNGYSVSYVSTQLTT 64 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEEeCCCCH
Confidence 456699999999999999987766544 1234577888877644
No 364
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.10 E-value=0.035 Score=61.64 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=36.2
Q ss_pred CCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHH
Q 015774 211 SPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYR 261 (400)
Q Consensus 211 ~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk 261 (400)
.|. .+++.||||+|||++|+.|++.++. ..+.++..++.+.+...+
T Consensus 482 ~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 482 KPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKHTVSR 528 (731)
T ss_pred CCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcccHHH
Confidence 454 6899999999999999999999853 678888877765444433
No 365
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.09 E-value=0.0074 Score=52.00 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...++.+.|++||||||++..+. . +.+.+++|++.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~--~-------G~i~~~g~di~ 48 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI--K-------RKHRLVGDDNV 48 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh--C-------CeEEEeeEeHH
Confidence 345899999999999999999987 2 23677777664
No 366
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.08 E-value=0.011 Score=58.27 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=42.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHH--HHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc---cccCCC
Q 015774 168 EKVTKDLKMKRVFSTLVEEMK--AIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAA 242 (400)
Q Consensus 168 ~~v~~~~~vkr~~~~liee~~--~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l---g~~~~~ 242 (400)
..+++-..+|+.+.+++.-+. .+-. +.. +.. ..+..-+++.|+||+||||+|+.++..+ |+. ..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~-----~~g----~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~-~~ 90 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQ-----RLG----LAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV-RK 90 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHH-----HhC----CCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc-cc
Confidence 456777788888777766321 1110 001 110 1122358899999999999998877765 221 01
Q ss_pred CCeEEEeCCcc
Q 015774 243 TNAVVVEADAF 253 (400)
Q Consensus 243 ~~avvIdaDef 253 (400)
...+.++.+++
T Consensus 91 ~~~v~v~~~~l 101 (284)
T TIGR02880 91 GHLVSVTRDDL 101 (284)
T ss_pred ceEEEecHHHH
Confidence 23566665544
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.07 E-value=0.0036 Score=53.47 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
.+..++.|.|++||||||+.+.|+....- ..+.+.++...+..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISD 51 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTT
T ss_pred cCCCEEEEEccCCCccccceeeecccccc---cccccccccccccc
Confidence 45679999999999999999999988631 23557777666653
No 368
>PRK09087 hypothetical protein; Validated
Probab=96.07 E-value=0.011 Score=56.39 Aligned_cols=83 Identities=14% Similarity=0.236 Sum_probs=48.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC--CChhhHhHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH--HDDMLQTAELVHQSSTDAASSLL 291 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~--~~d~~~aa~~v~~~~~~~ae~li 291 (400)
.+++.|++||||||+++.+++.. ++..++.++|... ....+... . .+|..... ..+.. .-.++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~~~~~~--~~~~~~~~-~l~iDDi~~~~-~~~~~----lf~l~ 110 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-------DALLIHPNEIGSD--AANAAAEG-PVLIEDIDAGG-FDETG----LFHLI 110 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-------CCEEecHHHcchH--HHHhhhcC-eEEEECCCCCC-CCHHH----HHHHH
Confidence 46999999999999999999876 4468887666521 11222111 0 00100000 01111 22356
Q ss_pred HHHHhCCCcEEEECcCCChH
Q 015774 292 VTALNEGRDVIMDGTLSWVP 311 (400)
Q Consensus 292 e~AL~eG~dVIIDgT~~~~~ 311 (400)
....+.|..+|+-++...+.
T Consensus 111 n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 111 NSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred HHHHhCCCeEEEECCCChHH
Confidence 66778899999988765443
No 369
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.07 E-value=0.0083 Score=56.66 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.+.++++.|+|||||||++..++... -.++..+.+++.++-
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC
Confidence 577899999999999999999997653 134668888988753
No 370
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.06 E-value=0.0073 Score=55.04 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=31.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|++||||||+.+.|+..+. . ..+.+.++...+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~-~~G~i~~~g~~~ 56 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLR--P-QSGAVLIDGEPL 56 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC--C-CceeEEECCEEc
Confidence 45678999999999999999999998752 1 234466665443
No 371
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.05 E-value=0.0074 Score=55.84 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+..++.+.|+|||||||+++.|+..+.. ..+-+.++...+.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~ 67 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGEDVN 67 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence 356789999999999999999999987621 2345667665443
No 372
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=96.05 E-value=0.007 Score=47.69 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=41.3
Q ss_pred HHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhh
Q 015774 85 LAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRK 164 (400)
Q Consensus 85 l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~ 164 (400)
|..++.++.+.+..+ .++++. .+ +++++|||+ .||.+|+|++.+ ..+++..|+
T Consensus 1 L~~~l~kt~~~l~~~--~~~~~~----~i-~~~l~ele~--------------~Li~aDVg~~~a------~~i~~~ik~ 53 (75)
T PF02881_consen 1 LKKGLSKTFKKLSGS--IFLTEK----DI-EEFLEELEE--------------ALIEADVGVEVA------EKIIENIKK 53 (75)
T ss_dssp HHHHHHHHHHHHHCC--SSCTHH----HH-HHHHHHHHH--------------HHHHTTTSHHHH------HHHHHHHHH
T ss_pred ChHHHHHHHHHHhCc--ccccHH----hH-HHHHHHHHH--------------HHHHcCcCHHHH------HHHHHHHHH
Confidence 345566666666555 222222 38 999999999 999999999999 888888888
Q ss_pred hhhh
Q 015774 165 QRFE 168 (400)
Q Consensus 165 ~rf~ 168 (400)
+...
T Consensus 54 ~~~~ 57 (75)
T PF02881_consen 54 KLIK 57 (75)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 4443
No 373
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.05 E-value=0.0072 Score=55.76 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|++||||||+.+.|+..+. ...+.+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~ 64 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPI 64 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEh
Confidence 35778999999999999999999998752 1234566665444
No 374
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.05 E-value=0.0076 Score=55.71 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|+|||||||+++.|+..+.. ..+-+.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~~ 63 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGRD 63 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence 357789999999999999999999987621 23446665543
No 375
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.04 E-value=0.042 Score=53.60 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
...-+++.|++|+||||+++.+++...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 667889999999999999999999873
No 376
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.04 E-value=0.0074 Score=55.45 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
++++.|+|||||||+|..++...+ .+++++++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~-----~~~~y~at~~ 34 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG-----GPVTYIATAE 34 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEccC
Confidence 479999999999999999998752 4667776543
No 377
>PTZ00202 tuzin; Provisional
Probab=96.03 E-value=0.033 Score=59.29 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=51.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
..|.++.|+|++|+||||+++.+...++. -.+++|.-.. .+.++..+.+.|.++.. ..... ...+.+.
T Consensus 284 ~~privvLtG~~G~GKTTLlR~~~~~l~~-----~qL~vNprg~--eElLr~LL~ALGV~p~~-~k~dL----LrqIqea 351 (550)
T PTZ00202 284 AHPRIVVFTGFRGCGKSSLCRSAVRKEGM-----PAVFVDVRGT--EDTLRSVVKALGVPNVE-ACGDL----LDFISEA 351 (550)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhcCCc-----eEEEECCCCH--HHHHHHHHHHcCCCCcc-cHHHH----HHHHHHH
Confidence 35679999999999999999999988742 3566666543 23333333333532211 11111 1222233
Q ss_pred HHHHHHhCCCcEEEECcCCChH
Q 015774 290 LLVTALNEGRDVIMDGTLSWVP 311 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~ 311 (400)
+......+|+.+||--++..-.
T Consensus 352 Ll~~~~e~GrtPVLII~lreg~ 373 (550)
T PTZ00202 352 CRRAKKMNGETPLLVLKLREGS 373 (550)
T ss_pred HHHHHHhCCCCEEEEEEecCCC
Confidence 3333444499888876654433
No 378
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.03 E-value=0.0074 Score=56.94 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.|.|++||||||+++.|+..+. ...+-+.+++..+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 66 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDI 66 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEh
Confidence 35778999999999999999999997652 1234567766444
No 379
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.03 E-value=0.017 Score=55.19 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
+...+|.|.|.+|+||||+|..++++......-..++.++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~ 58 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS 58 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc
Confidence 577899999999999999999999883212223234445433
No 380
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.02 E-value=0.011 Score=55.32 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=32.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe 252 (400)
+...++.+.|+|||||||++..++...-.+. .+.+++.|+++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 5678999999999999999999985531111 135788999876
No 381
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.008 Score=56.45 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=34.2
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
..+...-.+..++.+.|++||||||+++.|+..+.. ..+.+.++...+
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 69 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGTDL 69 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence 333333467789999999999999999999987631 234566665443
No 382
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.02 E-value=0.0082 Score=59.78 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~ 234 (400)
..+.+|+|+|+|||||||+++.|..
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH
Confidence 3456999999999999999999963
No 383
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.00 E-value=0.0085 Score=56.03 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=33.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc-----cccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES-----FWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l-----g~~~~~~~avvIdaDefR 254 (400)
-.+..++.+.|++||||||+++.|+..+ .- ..+-+.+++.++.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~ 70 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIY 70 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhh
Confidence 3577899999999999999999999875 21 2355777765543
No 384
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.98 E-value=0.0081 Score=56.72 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.|.|++||||||+++.|+..+.. ..+-+.++...+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~i 65 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGHDL 65 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCEEc
Confidence 467889999999999999999999976521 234466665443
No 385
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.98 E-value=0.0099 Score=54.60 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=32.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|+|||||||+++.|+..+.. ..+-+.++.-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i 64 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIYYKNCNI 64 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCccc
Confidence 457789999999999999999999987632 234467765444
No 386
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.98 E-value=0.0087 Score=55.22 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+.+.|+..+.. ..+-+.++...+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 64 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTIIIDGLKL 64 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 457789999999999999999999987621 234466665444
No 387
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.98 E-value=0.02 Score=56.11 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC-----CChhhHhHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH-----HDDMLQTAELVHQSST 284 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~-----~~d~~~aa~~v~~~~~ 284 (400)
.++.=+||.|..|+|||++++++..++ ..++-..+-|+.+++.....+++.|..... .+|- ++...+..+
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y--~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDL---sFe~~d~~y 124 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEY--ADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDL---SFEEGDTEY 124 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHH--hhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCC---CCCCCcHHH
Confidence 345567889999999999999999998 345556788888888877777777765421 1121 111112233
Q ss_pred HHHHHHHHHHHhCC-CcEEEECcCCChH
Q 015774 285 DAASSLLVTALNEG-RDVIMDGTLSWVP 311 (400)
Q Consensus 285 ~~ae~lie~AL~eG-~dVIIDgT~~~~~ 311 (400)
....++++-.+... .||+|=.|=.++.
T Consensus 125 k~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 125 KALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred HHHHHHhcCccccCCCcEEEEEecchhh
Confidence 44444555544322 3888887755444
No 388
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0069 Score=56.28 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=24.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.=|+++|+||+||||++..+++.+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 356779999999999999999999887
No 389
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.97 E-value=0.0091 Score=57.87 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=34.2
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 205 l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...-....++.++||+||||||+.+-|-.-- .-..+-+.|+++..
T Consensus 21 i~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE---~~~~G~I~i~g~~~ 66 (240)
T COG1126 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE---EPDSGSITVDGEDV 66 (240)
T ss_pred cceeEcCCCEEEEECCCCCCHHHHHHHHHCCc---CCCCceEEECCEec
Confidence 33334677899999999999999999987543 23456688887433
No 390
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.97 E-value=0.022 Score=57.58 Aligned_cols=92 Identities=25% Similarity=0.319 Sum_probs=50.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----ChhhHhHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----~d~~~aa~~v~~~~~~~a 287 (400)
.-+|+++|++||||||+.+.+...+. ......++.-.|..- + ....... .+.... . .-.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~--~~~~~~i~tiEdp~E-----~--~~~~~~~~i~q~evg~~-~-------~~~ 184 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN--KNAAGHIITIEDPIE-----Y--VHRNKRSLINQREVGLD-T-------LSF 184 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC--cCCCCEEEEEcCChh-----h--hccCccceEEccccCCC-C-------cCH
Confidence 46899999999999999999998762 222222333223211 1 1100000 000000 0 011
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~a 320 (400)
...+..++..+-++|+-|-...+......+..+
T Consensus 185 ~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa 217 (343)
T TIGR01420 185 ANALRAALREDPDVILIGEMRDLETVELALTAA 217 (343)
T ss_pred HHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHH
Confidence 234566888888999988887766554444444
No 391
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.96 E-value=0.0091 Score=55.49 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|+|||||||+++.|+..+. ...+-+.+++..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 66 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSI 66 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEec
Confidence 36778999999999999999999998752 1234466665443
No 392
>PRK05973 replicative DNA helicase; Provisional
Probab=95.96 E-value=0.0087 Score=58.11 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..+++|+|.||+||||++..++... -.++..+++++.++=
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~--a~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEA--MKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEEeCC
Confidence 567799999999999999999988765 234567888887654
No 393
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0089 Score=56.23 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.|.|++||||||+++.|+..+. ...+-+.+++..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 65 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDI 65 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEec
Confidence 46778999999999999999999997652 1234466665444
No 394
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0085 Score=56.68 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=26.9
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 205 l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+...-.+..++.+.|+|||||||+++.|+..+
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33334678899999999999999999999875
No 395
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.95 E-value=0.0063 Score=63.42 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.-+||.|+||+||||+|+.|+..+++ ..+.+++..+.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~-----pf~~id~~~l~ 145 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDV-----PFAIADATTLT 145 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC-----Cceecchhhcc
Confidence 35789999999999999999999865 55666665544
No 396
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0095 Score=56.46 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.|.|++||||||+++.|+..+.. ..+.+.++...+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 65 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGEDI 65 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCeEc
Confidence 467789999999999999999999987621 234466765544
No 397
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.93 E-value=0.0086 Score=56.25 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+..++.+.|+|||||||+++.|+..+. . ..+-+.+++..+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~-~~G~i~~~g~~~~ 65 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFLR--P-TSGSVLFDGEDIT 65 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCCC--C-CCceEEECCEECC
Confidence 35778999999999999999999998752 1 2344666655443
No 398
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.93 E-value=0.0053 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg 237 (400)
|+|.|+||+|||+++..|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998873
No 399
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.93 E-value=0.01 Score=55.12 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=33.3
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+...-.+..++.+.|++||||||+++.|+..+.. ..+-+.++...+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 64 (222)
T cd03224 18 GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDI 64 (222)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence 33333467889999999999999999999977621 234466665443
No 400
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0067 Score=56.07 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|++||||||+++.|+..+.. ..+-+.++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 63 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGKP 63 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCCc
Confidence 367889999999999999999999987521 23445665433
No 401
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0095 Score=55.56 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|++||||||+.+.|+..+. . ..+-+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~-~~G~i~~~g~~~ 64 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLK--P-TSGRATVAGHDV 64 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC--C-CceEEEECCEec
Confidence 35778999999999999999999998752 1 234466665443
No 402
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0089 Score=56.29 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=31.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.|.|+|||||||+++.|+..+.- ..+-+.+++..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~~~ 64 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVLIDGEDI 64 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence 357789999999999999999999987621 234466665443
No 403
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.92 E-value=0.0092 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
...-+++.|++|+||||++..|.++
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3568999999999999999999887
No 404
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.018 Score=58.51 Aligned_cols=84 Identities=25% Similarity=0.455 Sum_probs=56.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh----cC------C-------C-CChh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS----SK------G-------H-HDDM 272 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~----~~------G-------~-~~d~ 272 (400)
+-.++++.|+.|||||-++-.||.++ ++-+|++|.+- +|+.|. .. | + +++.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf-------~~EIINsDkmQ----vYkGldivTnK~t~~e~~gVPHHLlg~l~~~~ 74 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRF-------PGEIINSDKMQ----VYKGLDIVTNKITLQERKGVPHHLLGHLHPEA 74 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhC-------Cceeeccccee----eecCcccccccCChhhcCCCChHHhCcCChHh
Confidence 45699999999999999999999998 55899999875 233320 00 1 1 1122
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhCCC-cEEEECcCCC
Q 015774 273 LQTAELVHQSSTDAASSLLVTALNEGR-DVIMDGTLSW 309 (400)
Q Consensus 273 ~~aa~~v~~~~~~~ae~lie~AL~eG~-dVIIDgT~~~ 309 (400)
.+++..+ ...+...++...+.|. ++|.=||+..
T Consensus 75 e~t~~~F----~~~a~~aie~I~~rgk~PIv~GGs~~y 108 (348)
T KOG1384|consen 75 EYTAGEF----EDDASRAIEEIHSRGKLPIVVGGSNSY 108 (348)
T ss_pred hccHHHH----HHHHHHHHHHHHhCCCCCEEeCCchhh
Confidence 3344433 4555567778888887 7777777764
No 405
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.91 E-value=0.017 Score=57.58 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=36.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
...|.+|-++|+||+||||+++.|...+.-....+.+-+|-.|-|--
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy 125 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHY 125 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccccc
Confidence 67899999999999999999999888762112223477888998873
No 406
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.91 E-value=0.0099 Score=55.28 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=34.3
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
..+...-.+..++.+.|++||||||+.+.|+..+. ...+-+.+++..+
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~ 69 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSL 69 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEh
Confidence 33333346788999999999999999999998762 1235566665443
No 407
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.90 E-value=0.011 Score=56.91 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...++++.|+||||||+++.+++... -..+.+++.|+.|+-.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCCH
Confidence 566799999999999999999988876 3456789999988765
No 408
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.89 E-value=0.027 Score=63.72 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=50.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCC-EEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSP-VLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P-~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
+.+.=++++++...+...+..-+...++-. . ....| ..+++.|+||+||||+|+.|++.+. .
T Consensus 562 l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl--------------~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~ 624 (857)
T PRK10865 562 MEQELHHRVIGQNEAVEAVSNAIRRSRAGL--------------S-DPNRPIGSFLFLGPTGVGKTELCKALANFMF--D 624 (857)
T ss_pred HHHHhCCeEeCCHHHHHHHHHHHHHHHhcc--------------c-CCCCCCceEEEECCCCCCHHHHHHHHHHHhh--c
Confidence 333444566777776666666665532210 0 12334 4789999999999999999998873 2
Q ss_pred CCCCeEEEeCCccccc
Q 015774 241 AATNAVVVEADAFKET 256 (400)
Q Consensus 241 ~~~~avvIdaDefRe~ 256 (400)
.+...+.++..+|.+.
T Consensus 625 ~~~~~i~id~se~~~~ 640 (857)
T PRK10865 625 SDDAMVRIDMSEFMEK 640 (857)
T ss_pred CCCcEEEEEhHHhhhh
Confidence 2345677887777543
No 409
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.89 E-value=0.0098 Score=55.68 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=34.1
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
..+...-.+..++.|.|++||||||+++.|+..+.. ..+-+.+++..+
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~ 74 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQPL 74 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCEEc
Confidence 333333467889999999999999999999987621 234466665444
No 410
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.0095 Score=56.59 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|+|||||||+++.|+..+.- ..+-+.+++.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~ 66 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSILIDGVD 66 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence 356789999999999999999999987521 23446665543
No 411
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.88 E-value=0.012 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.|.++.++|++||||||+++.|...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45588999999999999999999887
No 412
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.87 E-value=0.01 Score=55.60 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+++.|+..+. ...+-+.++...+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDI 64 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEC
Confidence 35788999999999999999999998762 1234466665443
No 413
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.87 E-value=0.0056 Score=64.69 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..-||++|+||+||||+|++||+-+
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred hcceEEecCCCCChhHHHHHHHHHH
Confidence 4468999999999999999999977
No 414
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.87 E-value=0.008 Score=57.45 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+++.|+||+|||+++..+++... ..+..+.+++.|.+.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRA 85 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHh
Confidence 689999999999999999998763 234567788777643
No 415
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.86 E-value=0.012 Score=54.39 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..++.+.|++||||||+.+.|+..+. ...+-+.++...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~ 64 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSY 64 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcc
Confidence 5778999999999999999999998752 1234466766544
No 416
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.86 E-value=0.035 Score=56.06 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=31.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
.|..+++.|+||+||||+++.+++.+.-......++.|++.....
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 455679999999999999999998762100113467787766543
No 417
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.86 E-value=0.011 Score=55.48 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+.+.|+..+.- ..+.+.+++..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 64 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKILLDGQDI 64 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEec
Confidence 357789999999999999999999987521 234466655433
No 418
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.85 E-value=0.012 Score=53.30 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=32.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-++..++.+.|++||||||+++.|+..... ..+.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~ 65 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGVP 65 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCEE
Confidence 467889999999999999999999987632 34556776543
No 419
>PRK06893 DNA replication initiation factor; Validated
Probab=95.85 E-value=0.0092 Score=56.75 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=29.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
.+++.|+||+|||+++..+++... ..+.++.+++.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~--~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYL--LNQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEeeHH
Confidence 689999999999999999999873 335577788764
No 420
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.85 E-value=0.035 Score=62.71 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=49.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774 168 EKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV 247 (400)
Q Consensus 168 ~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv 247 (400)
+++.+...+...+...+....+ .+ ..+.++...+++.|+||+|||++|+.|++.+. ..+...+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~----------gl----~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~ 628 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA----------GL----SDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVR 628 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc----------cC----CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEE
Confidence 4567777666666666554211 11 11123345788999999999999999999874 23457788
Q ss_pred EeCCccccchH
Q 015774 248 VEADAFKETDV 258 (400)
Q Consensus 248 IdaDefRe~D~ 258 (400)
+|..+|.+.+.
T Consensus 629 ~d~s~~~~~~~ 639 (852)
T TIGR03346 629 IDMSEYMEKHS 639 (852)
T ss_pred Eechhhcccch
Confidence 98887765443
No 421
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.84 E-value=0.011 Score=54.63 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=33.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-++..++.+.|++||||||+.+.|+..+. . ..+-+.++...+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p-~~G~v~~~g~~~~ 66 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLAR--P-DAGEVLWQGEPIR 66 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCcEEEECCEEcc
Confidence 46778999999999999999999998763 1 2355677765543
No 422
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.84 E-value=0.01 Score=55.47 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=31.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-+...++.|.|++||||||+.+.|+..+.. ..+.+.++...
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 66 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDP---QKGQILIDGID 66 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCEe
Confidence 457789999999999999999999987621 23556666543
No 423
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.84 E-value=0.014 Score=55.06 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=37.2
Q ss_pred ccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 199 TDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 199 ~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+..++...-.....|.++||+||||||+.+.++.-..- ..+.+.+.+.++-
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~f~Ge~vs 68 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP---TSGTLLFEGEDVS 68 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC---CCceEEEcCcccc
Confidence 3444555544567789999999999999999999987521 2344555555544
No 424
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.83 E-value=0.01 Score=52.83 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeE-EEeCC
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAV-VVEAD 251 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~av-vIdaD 251 (400)
+|.++|+.+|||||+++.|.+.+ .+.+..+. +.+.|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l--~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL--KRRGYRVAVIKHTD 38 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEE-S
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--hHcCCceEEEEEcc
Confidence 68899999999999999999987 34444444 55544
No 425
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.82 E-value=0.011 Score=55.15 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=33.8
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+...-++..++.+.|++||||||+.+.|+..+.- ..+-+.+++..+
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 69 (228)
T cd03257 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFDGKDL 69 (228)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence 33333467789999999999999999999987621 234466665444
No 426
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.82 E-value=0.0079 Score=49.75 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~l 236 (400)
|+|.|.+||||||+.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999999775
No 427
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.82 E-value=0.0076 Score=55.65 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=31.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|++||||||+++.|+..+. . ..+-+.++...+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~i 65 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL--P-TSGTIRVNGQDV 65 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC--C-CceEEEECCEEc
Confidence 46788999999999999999999998762 1 234466665433
No 428
>PRK04328 hypothetical protein; Provisional
Probab=95.82 E-value=0.012 Score=56.81 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...++++.|+|||||||++..++... -..+..+++++.++-.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEHP 63 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCCH
Confidence 467899999999999999999977653 1346678999887644
No 429
>PHA02244 ATPase-like protein
Probab=95.82 E-value=0.024 Score=58.77 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
++|.|+||+||||+|+.++..+++ ..+.++
T Consensus 122 VLL~GppGtGKTtLA~aLA~~lg~-----pfv~In 151 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDL-----DFYFMN 151 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC-----CEEEEe
Confidence 577999999999999999999864 566666
No 430
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.81 E-value=0.011 Score=56.15 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|+|||||||+++.|+..+.. ..+.+.++...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 66 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTIRVGDIT 66 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence 357789999999999999999999977521 23445555433
No 431
>PF13479 AAA_24: AAA domain
Probab=95.80 E-value=0.0084 Score=56.41 Aligned_cols=33 Identities=21% Similarity=0.568 Sum_probs=27.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.|.-++|.|+||+||||++..+ ++.++|+.|.
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~ 33 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASL----------PKPLFIDTEN 33 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhC----------CCeEEEEeCC
Confidence 36788999999999999999988 1558888764
No 432
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.0081 Score=55.62 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|++||||||+++.|+..+. ...+.+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~ 64 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDV 64 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEc
Confidence 35778999999999999999999998652 1234466665443
No 433
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.011 Score=55.43 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=32.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|++||||||+++.|+..+. . ..+-+.+++..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p-~~G~i~~~g~~~ 66 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYD--V-DSGRILIDGHDV 66 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc--C-CCCEEEECCEEh
Confidence 45788999999999999999999998762 1 234466665443
No 434
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.79 E-value=0.087 Score=52.77 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=45.3
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 160 AATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 160 ~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+-.+...|++|++.+..|+.-.-+.+= .+ .|-....=.|.-+|.-||||+|||-+|++||.+.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~y-Le-------------nPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEY-LE-------------NPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHH-hh-------------ChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 445567899999999988875544432 11 1111112357889999999999999999999987
No 435
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.78 E-value=0.012 Score=55.30 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|++||||||+++.|+.... ...+-+.++...+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 71 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDI 71 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEc
Confidence 46778999999999999999999998652 1234566665444
No 436
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.78 E-value=0.012 Score=53.56 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-++..++.+.|+|||||||+.+.|+..+.- ..+-+.++..++.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGKPVT 65 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEECC
Confidence 356779999999999999999999987631 2355677765443
No 437
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.78 E-value=0.014 Score=54.26 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe 252 (400)
+...++.+.|+||+||||++..++...-.++ ....++.|+++.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 5677999999999999999999987642110 125778899876
No 438
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.78 E-value=0.012 Score=55.49 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=31.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|++||||||+++.|+..+. . ..+-+.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~~G~i~~~g~~ 65 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYV--P-ENGRVLVDGHD 65 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC--C-CCCEEEECCee
Confidence 36788999999999999999999998762 1 23446666543
No 439
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.77 E-value=0.011 Score=55.79 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+++.|+..+.. ..+-+.++...+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 65 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGLKV 65 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 357789999999999999999999987621 234466665443
No 440
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.77 E-value=0.0082 Score=55.74 Aligned_cols=42 Identities=24% Similarity=0.247 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+.+.|+..+.- ..+-+.++...+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 67 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQDL 67 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEeh
Confidence 357789999999999999999999987621 234566765433
No 441
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.76 E-value=0.012 Score=55.08 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+++.|+..+.-.+...+-+.++...+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 367789999999999999999999987620001234466665443
No 442
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.012 Score=55.31 Aligned_cols=42 Identities=24% Similarity=0.168 Sum_probs=31.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+++.|+..+.. ..+-+.++...+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 63 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLTLNGQDH 63 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCeec
Confidence 357789999999999999999999987521 234456655443
No 443
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.75 E-value=0.013 Score=55.00 Aligned_cols=39 Identities=33% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
++..++.+.|+|||||||+.+.|+..+.. ..+-+.+++.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~ 42 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVKVAGA 42 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCc
Confidence 35679999999999999999999987521 2234556554
No 444
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.013 Score=54.11 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+. ++.+.|+|||||||+++.|+..+. . ..+-+.++..++
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~-~~G~i~~~g~~~ 63 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTP--P-SSGTIRIDGQDV 63 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCC--C-CccEEEECCCcc
Confidence 345 899999999999999999998652 1 234466766544
No 445
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.74 E-value=0.009 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-.+++++|.||+||||+..+|+..-
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~G 33 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARAG 33 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHcC
Confidence 3689999999999999999999883
No 446
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.73 E-value=0.012 Score=56.67 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=50.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
....|+++|++||||||+...|..... .....++.|+ ++++. +...... ....... ..-...
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~--~~~~~iv~iEd~~E~~--------l~~~~~~-~~~~~~~------~~~~~~ 188 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIP--PEDERIVTIEDPPELR--------LPGPNQI-QIQTRRD------EISYED 188 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCH--TTTSEEEEEESSS-S----------SCSSEE-EEEEETT------TBSHHH
T ss_pred cceEEEEECCCccccchHHHHHhhhcc--ccccceEEecccccee--------ecccceE-EEEeecC------cccHHH
Confidence 457999999999999999999999873 2223445554 33332 1111000 0000000 001122
Q ss_pred HHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
++..++..+-|+|+-|-......... +..+.
T Consensus 189 ~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~~ 219 (270)
T PF00437_consen 189 LLKSALRQDPDVIIIGEIRDPEAAEA-IQAAN 219 (270)
T ss_dssp HHHHHTTS--SEEEESCE-SCHHHHH-HHHHH
T ss_pred HHHHHhcCCCCcccccccCCHhHHHH-HHhhc
Confidence 55668889999999998887765444 44443
No 447
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.73 E-value=0.014 Score=53.69 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+..++.+.|++||||||+.+.|+..+. ...+.+.++...+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~ 65 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALA 65 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcc
Confidence 35778999999999999999999998762 12355677765543
No 448
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.0084 Score=55.90 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
-++..++.+.|++||||||+++.|+..+.. ..+.+.++.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g 65 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDG 65 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC
Confidence 357789999999999999999999987521 234455554
No 449
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.72 E-value=0.016 Score=63.54 Aligned_cols=75 Identities=24% Similarity=0.234 Sum_probs=49.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
..+|.++......+..+..+++-++.-. .+ ..+. ...|.-+++.|+||+||||+++.++.+++.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~------~~---~~~~--~~~~~gill~G~~G~GKt~~~~~~a~~~~~----- 211 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPS------RF---QKLG--GKIPKGVLMVGPPGTGKTLLAKAIAGEAKV----- 211 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHH------HH---HhcC--CCCCCcEEEECCCCCCHHHHHHHHHHHcCC-----
Confidence 4567788777777777776665422100 00 1111 233455999999999999999999999854
Q ss_pred CeEEEeCCccc
Q 015774 244 NAVVVEADAFK 254 (400)
Q Consensus 244 ~avvIdaDefR 254 (400)
+.+.+++.+|.
T Consensus 212 ~f~~is~~~~~ 222 (644)
T PRK10733 212 PFFTISGSDFV 222 (644)
T ss_pred CEEEEehHHhH
Confidence 56667765543
No 450
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.72 E-value=0.05 Score=61.26 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=35.6
Q ss_pred CCC-EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchH
Q 015774 210 RSP-VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDV 258 (400)
Q Consensus 210 ~~P-~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~ 258 (400)
..| ..+++.||+|+|||++|+.||+.+.. ...+.+.+|..+|.+.+.
T Consensus 536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~--~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 536 NRPIASFLFSGPTGVGKTELTKALASYFFG--SEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcC--CccceEEEEchhcccccc
Confidence 344 46789999999999999999998842 234678888777765443
No 451
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.012 Score=55.57 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=31.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|++||||||+++.|+.... ...+-+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~ 65 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNH 65 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEe
Confidence 35778999999999999999999998752 123446666544
No 452
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.71 E-value=0.013 Score=59.79 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=25.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..|.+|.++|.+||||||++..|..++
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l 29 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRL 29 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999998
No 453
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.013 Score=55.83 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+++.|+..... ..+.+.++...+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 69 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTILLRGQHI 69 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEEECCEEC
Confidence 367889999999999999999999987521 234566665444
No 454
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.71 E-value=0.012 Score=56.09 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|+|||||||+.+.|+..+.. ..+-+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~i 64 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGEQL 64 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence 467889999999999999999999987621 234466655433
No 455
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.71 E-value=0.014 Score=53.03 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|++||||||+.+.|+.... ...+.+.++...+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~ 63 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDL 63 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEC
Confidence 35778999999999999999999998762 1235577766444
No 456
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.012 Score=55.16 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=31.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.|.|+|||||||+.+.|+..... ..+.+.++...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~~ 64 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQD 64 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCEE
Confidence 357789999999999999999999987621 23456666543
No 457
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.013 Score=54.09 Aligned_cols=41 Identities=22% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..++.+.|++||||||+.+.|+..+. ...+-+.++...+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~ 62 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDV 62 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEc
Confidence 5678999999999999999999998762 1234466766544
No 458
>PRK12377 putative replication protein; Provisional
Probab=95.69 E-value=0.0084 Score=58.47 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.-+++.|+||+|||+++.+++..+ ...+..+++++..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~~l~ 141 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVPDVM 141 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHHHHH
Confidence 468999999999999999999998 3445667777765543
No 459
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.69 E-value=0.014 Score=52.66 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc----c----cCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF----W----SGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg----~----~~~~~~avvIdaDef 253 (400)
...+++++|+||+||||++..++...- | ...+.++++|+.|.=
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 456999999999999999999888762 1 014567888987764
No 460
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.69 E-value=0.012 Score=57.06 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+++++|.+|+||||++..++..+ .+.+..+.+||.|--.
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~--a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRL--AEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHH--HHCCCCceEEeCCCcc
Confidence 78999999999999999999987 5667789999999744
No 461
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.69 E-value=0.047 Score=57.15 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=48.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC--CeEEEeCCcc-ccchHHHHHHhcC---CCCChhhHhHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT--NAVVVEADAF-KETDVIYRALSSK---GHHDDMLQTAELVHQSS 283 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~--~avvIdaDef-Re~D~irk~L~~~---G~~~d~~~aa~~v~~~~ 283 (400)
...+.+++.|+||+||||+++.+++.+. .+.. .++++-.|+= .+-..+.+.+... ...+.+ ...|..+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p----~~~~~~v 239 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEP----ASRHVQV 239 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCC----hHHHHHH
Confidence 4567799999999999999999999862 1111 2233434431 1222334444221 001111 1223333
Q ss_pred HHHHHHHHHHHHhCCCcEEE
Q 015774 284 TDAASSLLVTALNEGRDVIM 303 (400)
Q Consensus 284 ~~~ae~lie~AL~eG~dVII 303 (400)
...+...+++...+|++|||
T Consensus 240 a~~v~e~Ae~~~~~GkdVVL 259 (415)
T TIGR00767 240 AEMVIEKAKRLVEHKKDVVI 259 (415)
T ss_pred HHHHHHHHHHHHHcCCCeEE
Confidence 44555567777788987765
No 462
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.69 E-value=0.016 Score=53.51 Aligned_cols=43 Identities=30% Similarity=0.328 Sum_probs=33.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+..++.+.|++||||||+.+.|+.... ...+-+.++...+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~ 66 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIK 66 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccc
Confidence 35778999999999999999999998762 12345777765554
No 463
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.69 E-value=0.013 Score=55.32 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+..++.+.|++||||||+++.|+...
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467799999999999999999999876
No 464
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.013 Score=55.33 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|++||||||+.+.|+..+. . ..+-+.++...+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~~ 67 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP--R-DAGNIIIDDEDI 67 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC--C-CCcEEEECCEEC
Confidence 36788999999999999999999998762 1 234466665444
No 465
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.68 E-value=0.014 Score=54.36 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-++..++.|.|++||||||+.+.|+..... ..+-+.++...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 67 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSILIDGVD 67 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEE
Confidence 357789999999999999999999977521 23446666543
No 466
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.012 Score=56.89 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=30.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.|.|+|||||||+++.|+..+.. ..+-+.+++..
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~~ 74 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEILLDAQP 74 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCEe
Confidence 357789999999999999999999987521 23445665543
No 467
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=95.68 E-value=0.013 Score=52.55 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
|.++++-.|+||||++..||..+ ...+.+++++|.|-.-
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~l--a~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQAL--ARKGKKVLLIDLDPQA 39 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEEESTTS
T ss_pred CEEEcCCCCccHHHHHHHHHhcc--ccccccccccccCccc
Confidence 56889999999999999999998 5578899999998754
No 468
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.67 E-value=0.02 Score=57.60 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=44.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.|+.+.+.+.++..+...+.. .+-|..+|+.|++|+||+|+|..+++.+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~----------------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ----------------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh----------------------CCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 588899999999988888776 456889999999999999999999999754
No 469
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.67 E-value=0.011 Score=55.57 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+++++|.+|+||||++..++..+ .+.+..+.+++.|--+
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~--a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRL--AEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHH--HHCCCcEEEEECCCCc
Confidence 47899999999999999999988 5567789999998665
No 470
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.66 E-value=0.053 Score=61.42 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774 155 KDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMK 234 (400)
Q Consensus 155 ~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~ 234 (400)
=..+.+..|+.+++.+++.+.. ++.+-.|+. .+..--+++.|+||+||||++..|+.
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~e-------i~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEE-------IRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHH-------HHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHH
Confidence 3455667788888888776552 333333331 12222456789999999999999999
Q ss_pred hc
Q 015774 235 ES 236 (400)
Q Consensus 235 ~l 236 (400)
+.
T Consensus 222 ~i 223 (857)
T PRK10865 222 RI 223 (857)
T ss_pred Hh
Confidence 87
No 471
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.66 E-value=0.014 Score=54.34 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..++.+.|++||||||+++.|+..+. . ..+-+.++...+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~~ 62 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE--P-ASGSIKVNDQSH 62 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC--C-CCcEEEECCEEc
Confidence 5788999999999999999999998762 1 234466765444
No 472
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.66 E-value=0.014 Score=59.11 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...++++.|+|||||||++..++... ...+..+++||+..-
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~ 94 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHA 94 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccch
Confidence 566799999999999999999987765 334667889987653
No 473
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.66 E-value=0.013 Score=51.77 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.++++-.|+||||++..|+..+ ...+.++++||.|-.
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l--~~~g~~vllvD~D~~ 39 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTAL--AQLGYKVVLIDADLG 39 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH--HhCCCeEEEEeCCCC
Confidence 56888999999999999999988 566788999999975
No 474
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.65 E-value=0.009 Score=55.35 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
-++..++.+.|++||||||+++.|+..+. ...+-+.++.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g 60 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFG 60 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECC
Confidence 46778999999999999999999998752 1234455654
No 475
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.64 E-value=0.014 Score=55.88 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
....+++++|+||+||||++..++...- .+.+.++++++.++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~ 69 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE 69 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc
Confidence 4566999999999999999999887751 11255788898765
No 476
>PRK09183 transposase/IS protein; Provisional
Probab=95.64 E-value=0.0091 Score=58.19 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
....+++.|+||+|||+++..|+... ...+..+.+++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a--~~~G~~v~~~~~~ 139 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA--VRAGIKVRFTTAA 139 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEeHH
Confidence 34567899999999999999998765 1234466666643
No 477
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.64 E-value=0.014 Score=56.46 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.++++.||+|+|||.+|-.||+++|+ .+|+.|-+-
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq 36 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQ 36 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCC-------CEEEeccee
Confidence 47899999999999999999999976 688888775
No 478
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.017 Score=52.09 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|++||||||+.+.|+..+.. ..+-+.++...+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~ 66 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDL 66 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEh
Confidence 467789999999999999999999988632 234566766444
No 479
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.63 E-value=0.017 Score=52.13 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.+.|++||||||+.+.|+..+. ...+.+.++...+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~ 66 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADI 66 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEc
Confidence 35678999999999999999999998762 1235566765443
No 480
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.63 E-value=0.018 Score=62.75 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...++++.||||+||||+++.|++.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHH
Confidence 44599999999999999999999987
No 481
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.62 E-value=0.01 Score=55.93 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=34.2
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
..+...-++..++.+.|++||||||+++.|+..+. ...+.+.+++..+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i 73 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPM 73 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEc
Confidence 33333346778999999999999999999998752 1235566765444
No 482
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.62 E-value=0.01 Score=54.49 Aligned_cols=41 Identities=22% Similarity=0.150 Sum_probs=31.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|+|||||||+.+.|+..+. . ..+-+.++.-.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~-~~G~i~~~g~~ 61 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEK--F-DSGQVYLNGKE 61 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCC--C-CCeEEEECCEE
Confidence 35678999999999999999999998762 1 23446666544
No 483
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=95.62 E-value=0.011 Score=52.67 Aligned_cols=28 Identities=39% Similarity=0.355 Sum_probs=24.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.|-+.++.|++|+||||++..|.--++.
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5679999999999999999999877754
No 484
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.62 E-value=0.014 Score=55.05 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=30.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
-+++.++.|.|++||||||+++.|+..+. . ..+-+.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~-~~G~i~~~g~ 65 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYD--P-TSGEILLDGV 65 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCC--C-CCCEEEECCE
Confidence 46788999999999999999999998762 1 2344666553
No 485
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.61 E-value=0.01 Score=55.69 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++..++.+.|+|||||||+.+.|+...
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 567899999999999999999999875
No 486
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.61 E-value=0.03 Score=58.54 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=47.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC--CeEEEeCCccc-cchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT--NAVVVEADAFK-ETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~--~avvIdaDefR-e~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a 287 (400)
..+=.++.|+||+||||+++.+++... .... .++++-.|++. +-..+.+.+.+.-....+...+ ..|..+...+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~-~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPA-ERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCH-HHHHHHHHHH
Confidence 344567789999999999999998762 1111 23445566652 2223344443220000011111 1233333344
Q ss_pred HHHHHHHHhCCCcEEE
Q 015774 288 SSLLVTALNEGRDVIM 303 (400)
Q Consensus 288 e~lie~AL~eG~dVII 303 (400)
-..+++....|.+|||
T Consensus 245 ie~Ae~~~e~G~dVlL 260 (416)
T PRK09376 245 IEKAKRLVEHGKDVVI 260 (416)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 4566666678887664
No 487
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.61 E-value=0.011 Score=53.62 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|++||||||+++.|+..+. ...+-+.++...+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~ 64 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDL 64 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEc
Confidence 35778999999999999999999997752 1234466765444
No 488
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.61 E-value=0.012 Score=61.46 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=27.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
+.-||+.||||+|||++|+.|+..+++ +...+++-
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~-----pf~~~da~ 150 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNV-----PFAIADAT 150 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCC-----CeEEechh
Confidence 457899999999999999999999864 44555543
No 489
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.61 E-value=0.035 Score=49.34 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=38.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.+.+...+.+++...+....+ . ...++|.++-+-|+||+|||.+++.||+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~---------~-------~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLA---------N-------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHc---------C-------CCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 345566666666666665322 0 1257899999999999999999999999963
No 490
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.01 Score=60.47 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i 259 (400)
-+...++.+.||+||||||+.+.||.-.. -..+-+.|+..+.-...|.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 45678999999999999999999997653 2456688887776653343
No 491
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.60 E-value=0.019 Score=53.72 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...++++.|.||+|||+++..++... -.++..+++++.++-
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~--~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQG--LKNGEKAMYISLEER 55 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence 457799999999999999999988653 123567888988764
No 492
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.59 E-value=0.0099 Score=54.89 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=25.0
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMK 234 (400)
Q Consensus 204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~ 234 (400)
++...-.+..++.+.|+|||||||+.+.++.
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3333346788999999999999999999863
No 493
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.59 E-value=0.011 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
...|.+.|.+||||||++..+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999765
No 494
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.58 E-value=0.016 Score=55.45 Aligned_cols=28 Identities=39% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-++...++++|++||||||+.+.|....
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3567899999999999999999998875
No 495
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.028 Score=62.86 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=42.1
Q ss_pred CCCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhc
Q 015774 210 RSPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSS 265 (400)
Q Consensus 210 ~~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~ 265 (400)
++|. .+|+.||+|+|||.+|++||..++- .....+.||-.+|.+.+..-+-+.+
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg--~e~aliR~DMSEy~EkHsVSrLIGa 572 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEALFG--DEQALIRIDMSEYMEKHSVSRLIGA 572 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHHHhcC--CCccceeechHHHHHHHHHHHHhCC
Confidence 4454 7888999999999999999999852 3356788998888887776554533
No 496
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.57 E-value=0.014 Score=56.07 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=30.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-++..++.+.|++||||||+.+.|+..+.. ..+-+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~~~g~~ 65 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRP 65 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCEE
Confidence 457789999999999999999999987521 23445565543
No 497
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.54 E-value=0.017 Score=55.35 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-.+..++.+.|+|||||||+++.|+..+. ...+-+.++...
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~ 69 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRD 69 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcc
Confidence 46788999999999999999999998762 123446666544
No 498
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.54 E-value=0.016 Score=57.38 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=31.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC-Cccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA-DAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda-DefR 254 (400)
-++..++.+.|+|||||||+.+.|+.... .. .+-+.+++ |..+
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~-~G~i~i~G~~~~~ 71 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLLK--PT-SGEILVLGYDVVK 71 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcC--CC-ceEEEEcCEeCcc
Confidence 46778999999999999999999998872 22 33455554 4433
No 499
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.54 E-value=0.011 Score=55.67 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.|.|+|||||||+.+.|+..+..+ ...+.+.++...+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~ 66 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-VTSGTILFKGQDL 66 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCcceEEECCEec
Confidence 3577899999999999999999999863101 1235566766444
No 500
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.54 E-value=0.018 Score=60.69 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=35.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..+++++|.||+||||++..++... ...+.++++++.++-.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs~ 134 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEESL 134 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCCH
Confidence 467799999999999999999998876 3345578889887654
Done!