Query 015774
Match_columns 400
No_of_seqs 253 out of 1420
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yhs_A FTSY, cell division pro 99.4 3.9E-12 1.3E-16 132.5 19.3 198 81-322 195-399 (503)
2 1vma_A Cell division protein F 99.4 4.2E-12 1.4E-16 124.3 18.0 189 81-323 15-211 (306)
3 1zu4_A FTSY; GTPase, signal re 99.4 1.6E-11 5.5E-16 120.7 19.3 198 85-321 7-214 (320)
4 1gvn_B Zeta; postsegregational 99.3 1.3E-11 4.5E-16 118.9 15.7 105 209-322 30-134 (287)
5 2p5t_B PEZT; postsegregational 99.3 3.5E-11 1.2E-15 112.8 16.7 104 209-322 29-133 (253)
6 3b9q_A Chloroplast SRP recepto 99.2 1.2E-10 4.1E-15 113.5 13.0 138 84-255 2-141 (302)
7 1ly1_A Polynucleotide kinase; 99.1 2.6E-10 9E-15 98.8 10.4 95 212-322 2-102 (181)
8 2og2_A Putative signal recogni 99.1 5.1E-10 1.7E-14 112.0 13.3 141 81-255 56-198 (359)
9 3dm5_A SRP54, signal recogniti 99.1 2.5E-09 8.4E-14 110.0 18.1 187 96-322 10-206 (443)
10 3zvl_A Bifunctional polynucleo 99.0 1.7E-09 5.9E-14 109.2 13.9 79 209-322 255-333 (416)
11 2rhm_A Putative kinase; P-loop 99.0 1E-09 3.5E-14 96.4 10.8 85 210-308 3-87 (193)
12 3e70_C DPA, signal recognition 99.0 1.4E-09 4.9E-14 107.3 12.7 149 82-256 8-171 (328)
13 1rj9_A FTSY, signal recognitio 99.0 3.5E-09 1.2E-13 103.3 13.2 131 82-255 4-143 (304)
14 1ltq_A Polynucleotide kinase; 99.0 4.6E-09 1.6E-13 99.5 12.7 96 212-322 2-102 (301)
15 1qhx_A CPT, protein (chloramph 99.0 1.1E-09 3.8E-14 95.4 7.6 103 211-320 2-109 (178)
16 2axn_A 6-phosphofructo-2-kinas 98.9 4.7E-09 1.6E-13 109.3 12.5 105 210-322 33-143 (520)
17 3kl4_A SRP54, signal recogniti 98.9 1.8E-09 6.2E-14 110.7 8.9 177 96-311 6-192 (433)
18 1j8m_F SRP54, signal recogniti 98.9 3.5E-08 1.2E-12 95.9 17.4 125 98-256 9-140 (297)
19 2xxa_A Signal recognition part 98.9 2.2E-08 7.7E-13 102.3 16.5 112 113-257 22-144 (433)
20 1knq_A Gluconate kinase; ALFA/ 98.8 2.6E-08 8.8E-13 86.8 12.1 91 210-314 6-96 (175)
21 3a4m_A L-seryl-tRNA(SEC) kinas 98.8 3E-08 1E-12 93.3 13.2 91 211-322 3-96 (260)
22 3t61_A Gluconokinase; PSI-biol 98.8 1.9E-08 6.3E-13 90.1 10.6 90 211-318 17-106 (202)
23 2j37_W Signal recognition part 98.8 6.5E-08 2.2E-12 100.8 15.9 135 93-256 7-143 (504)
24 4eun_A Thermoresistant glucoki 98.8 3.1E-08 1.1E-12 89.0 11.3 94 209-316 26-119 (200)
25 2yvu_A Probable adenylyl-sulfa 98.8 2.7E-08 9.1E-13 87.9 10.5 99 209-321 10-108 (186)
26 2ffh_A Protein (FFH); SRP54, s 98.8 1.8E-07 6.3E-12 95.5 17.6 111 115-256 28-140 (425)
27 1tev_A UMP-CMP kinase; ploop, 98.7 6.8E-08 2.3E-12 84.3 10.7 97 211-319 2-107 (196)
28 2vli_A Antibiotic resistance p 98.7 3.2E-08 1.1E-12 86.3 7.8 96 211-322 4-101 (183)
29 2c95_A Adenylate kinase 1; tra 98.6 1.3E-07 4.3E-12 83.2 10.2 90 210-314 7-104 (196)
30 3lw7_A Adenylate kinase relate 98.6 1.2E-07 4.2E-12 80.5 9.2 94 213-320 2-99 (179)
31 2bwj_A Adenylate kinase 5; pho 98.6 1.5E-07 5.1E-12 82.9 9.5 91 211-316 11-109 (199)
32 2v3c_C SRP54, signal recogniti 98.6 6.8E-08 2.3E-12 98.7 7.6 131 96-255 8-140 (432)
33 1bif_A 6-phosphofructo-2-kinas 98.6 2.4E-07 8.2E-12 94.6 11.4 106 209-322 36-147 (469)
34 1qf9_A UMP/CMP kinase, protein 98.6 2.9E-07 1E-11 80.1 10.2 38 210-254 4-41 (194)
35 1ukz_A Uridylate kinase; trans 98.6 5.2E-07 1.8E-11 80.3 12.1 90 209-313 12-111 (203)
36 1m7g_A Adenylylsulfate kinase; 98.5 3.7E-07 1.3E-11 82.5 8.9 99 209-320 22-120 (211)
37 3cm0_A Adenylate kinase; ATP-b 98.5 4E-07 1.4E-11 79.6 8.5 36 211-253 3-38 (186)
38 3uie_A Adenylyl-sulfate kinase 98.5 4.1E-07 1.4E-11 81.6 8.6 98 209-320 22-119 (200)
39 3trf_A Shikimate kinase, SK; a 98.4 5.5E-07 1.9E-11 78.9 8.9 36 212-254 5-40 (185)
40 1aky_A Adenylate kinase; ATP:A 98.4 1.5E-06 5.2E-11 78.7 11.9 37 210-253 2-38 (220)
41 1nks_A Adenylate kinase; therm 98.4 9.5E-07 3.2E-11 76.9 9.7 87 213-306 2-93 (194)
42 3vaa_A Shikimate kinase, SK; s 98.4 9E-07 3.1E-11 79.3 9.8 38 210-254 23-60 (199)
43 2px0_A Flagellar biosynthesis 98.4 5.3E-07 1.8E-11 87.4 8.8 110 114-256 38-148 (296)
44 2cdn_A Adenylate kinase; phosp 98.4 5E-07 1.7E-11 80.6 7.6 38 209-253 17-54 (201)
45 3fb4_A Adenylate kinase; psych 98.4 6.5E-07 2.2E-11 80.5 8.0 93 214-320 2-100 (216)
46 2xb4_A Adenylate kinase; ATP-b 98.4 1.6E-06 5.6E-11 79.4 10.4 33 214-253 2-34 (223)
47 3tlx_A Adenylate kinase 2; str 98.4 8.3E-07 2.8E-11 82.8 8.5 38 209-253 26-63 (243)
48 1zp6_A Hypothetical protein AT 98.4 1.2E-06 4.1E-11 76.9 8.9 40 210-254 7-46 (191)
49 3dl0_A Adenylate kinase; phosp 98.3 6.9E-07 2.4E-11 80.4 7.1 94 214-321 2-101 (216)
50 1kht_A Adenylate kinase; phosp 98.3 1.2E-06 3.9E-11 76.4 8.1 40 212-253 3-42 (192)
51 2bdt_A BH3686; alpha-beta prot 98.3 3.2E-06 1.1E-10 74.5 10.9 91 213-319 3-93 (189)
52 2wwf_A Thymidilate kinase, put 98.3 6.9E-07 2.4E-11 79.5 6.6 30 209-238 7-36 (212)
53 3be4_A Adenylate kinase; malar 98.3 1.8E-06 6.3E-11 78.4 9.5 36 212-254 5-40 (217)
54 1ls1_A Signal recognition part 98.3 4.3E-06 1.5E-10 80.8 12.4 110 115-255 28-139 (295)
55 3sr0_A Adenylate kinase; phosp 98.3 4E-06 1.4E-10 77.3 11.6 93 214-321 2-98 (206)
56 2plr_A DTMP kinase, probable t 98.3 3E-06 1E-10 75.0 10.2 90 211-308 3-96 (213)
57 3umf_A Adenylate kinase; rossm 98.3 4.7E-06 1.6E-10 77.8 11.9 36 209-251 26-61 (217)
58 1zd8_A GTP:AMP phosphotransfer 98.3 2.5E-06 8.4E-11 77.8 9.7 38 210-254 5-42 (227)
59 4gp7_A Metallophosphoesterase; 98.3 2.2E-06 7.7E-11 75.4 9.1 92 210-323 7-98 (171)
60 2pbr_A DTMP kinase, thymidylat 98.3 3.2E-06 1.1E-10 73.7 9.5 86 214-305 2-90 (195)
61 1m8p_A Sulfate adenylyltransfe 98.2 5.5E-06 1.9E-10 87.4 12.0 99 209-321 393-492 (573)
62 1e6c_A Shikimate kinase; phosp 98.2 5E-06 1.7E-10 71.6 9.4 35 213-254 3-37 (173)
63 2pt5_A Shikimate kinase, SK; a 98.2 2.4E-06 8.3E-11 73.4 7.3 34 214-254 2-35 (168)
64 1ak2_A Adenylate kinase isoenz 98.2 8E-06 2.7E-10 75.0 11.0 46 200-253 5-50 (233)
65 1nn5_A Similar to deoxythymidy 98.2 2.1E-06 7.2E-11 76.4 6.9 29 210-238 7-35 (215)
66 1y63_A LMAJ004144AAA protein; 98.2 7.2E-07 2.5E-11 79.1 3.8 39 209-254 7-46 (184)
67 1sxj_A Activator 1 95 kDa subu 98.2 3.6E-06 1.2E-10 86.9 9.4 92 156-258 27-118 (516)
68 2ze6_A Isopentenyl transferase 98.2 1.1E-06 3.8E-11 82.6 5.2 35 213-254 2-36 (253)
69 2gks_A Bifunctional SAT/APS ki 98.2 3.8E-06 1.3E-10 88.1 9.6 96 210-319 370-465 (546)
70 2v54_A DTMP kinase, thymidylat 98.2 1.1E-05 3.9E-10 71.2 11.2 26 211-236 3-28 (204)
71 1zak_A Adenylate kinase; ATP:A 98.2 2.6E-06 8.8E-11 77.3 7.2 37 211-254 4-40 (222)
72 3u61_B DNA polymerase accessor 98.2 1.9E-06 6.5E-11 82.3 6.5 71 157-254 15-85 (324)
73 1x6v_B Bifunctional 3'-phospho 98.2 7.5E-06 2.6E-10 87.6 11.5 95 210-321 50-147 (630)
74 3kb2_A SPBC2 prophage-derived 98.2 1E-06 3.5E-11 75.4 4.0 35 213-254 2-36 (173)
75 1via_A Shikimate kinase; struc 98.2 5.5E-06 1.9E-10 72.2 8.6 34 214-254 6-39 (175)
76 2iyv_A Shikimate kinase, SK; t 98.1 7.6E-07 2.6E-11 78.0 2.0 35 213-254 3-37 (184)
77 1kag_A SKI, shikimate kinase I 98.1 1.5E-06 5.1E-11 75.1 3.0 36 212-254 4-39 (173)
78 1zuh_A Shikimate kinase; alpha 98.1 1.3E-06 4.4E-11 75.6 2.6 36 212-254 7-42 (168)
79 2qor_A Guanylate kinase; phosp 98.1 4.7E-07 1.6E-11 81.5 -0.3 28 209-236 9-36 (204)
80 1e4v_A Adenylate kinase; trans 98.0 1E-05 3.4E-10 73.1 8.0 33 214-253 2-34 (214)
81 2f6r_A COA synthase, bifunctio 98.0 1.7E-05 5.9E-10 75.7 10.0 37 209-253 72-108 (281)
82 1uj2_A Uridine-cytidine kinase 98.0 4.1E-06 1.4E-10 78.0 5.3 47 209-255 19-68 (252)
83 3iij_A Coilin-interacting nucl 98.0 2.3E-06 7.9E-11 74.8 3.3 38 210-254 9-46 (180)
84 2pez_A Bifunctional 3'-phospho 98.0 4.6E-05 1.6E-09 66.5 11.1 40 210-254 3-45 (179)
85 1uf9_A TT1252 protein; P-loop, 98.0 2.9E-06 9.9E-11 74.8 3.4 38 209-254 5-42 (203)
86 1lv7_A FTSH; alpha/beta domain 97.9 1.2E-05 4.1E-10 74.3 6.9 76 163-254 7-82 (257)
87 3crm_A TRNA delta(2)-isopenten 97.9 2.6E-05 8.8E-10 77.2 9.4 37 211-254 4-40 (323)
88 2z0h_A DTMP kinase, thymidylat 97.9 2.7E-05 9.1E-10 68.2 8.4 23 214-236 2-24 (197)
89 2qz4_A Paraplegin; AAA+, SPG7, 97.9 1.9E-05 6.6E-10 72.2 7.4 74 165-254 3-76 (262)
90 3a8t_A Adenylate isopentenyltr 97.9 3.3E-05 1.1E-09 76.9 9.5 38 210-254 38-75 (339)
91 4eaq_A DTMP kinase, thymidylat 97.9 3.6E-05 1.2E-09 71.4 8.7 29 209-237 23-51 (229)
92 1vht_A Dephospho-COA kinase; s 97.9 7.7E-06 2.6E-10 73.8 4.0 36 211-254 3-38 (218)
93 1cke_A CK, MSSA, protein (cyti 97.9 6.9E-06 2.4E-10 73.9 3.6 36 212-254 5-40 (227)
94 2grj_A Dephospho-COA kinase; T 97.9 7E-06 2.4E-10 74.7 3.6 38 210-254 10-47 (192)
95 3pfi_A Holliday junction ATP-d 97.9 3.4E-05 1.2E-09 73.8 8.6 84 157-263 18-101 (338)
96 3exa_A TRNA delta(2)-isopenten 97.9 3.7E-05 1.3E-09 76.2 8.9 83 212-305 3-99 (322)
97 4edh_A DTMP kinase, thymidylat 97.8 0.00011 3.7E-09 67.9 11.3 93 211-305 5-99 (213)
98 1jjv_A Dephospho-COA kinase; P 97.8 6.4E-06 2.2E-10 73.5 3.0 35 212-254 2-36 (206)
99 1njg_A DNA polymerase III subu 97.8 2.2E-05 7.7E-10 68.8 6.2 58 159-238 14-71 (250)
100 2qt1_A Nicotinamide riboside k 97.8 1.7E-05 5.8E-10 70.9 5.4 40 209-254 18-57 (207)
101 1iqp_A RFCS; clamp loader, ext 97.8 1.3E-05 4.4E-10 75.3 4.7 72 158-252 15-86 (327)
102 1sxj_C Activator 1 40 kDa subu 97.8 1.8E-05 6.1E-10 76.5 5.7 56 158-236 15-70 (340)
103 2chg_A Replication factor C sm 97.8 5E-05 1.7E-09 66.1 7.6 73 159-254 8-80 (226)
104 3ake_A Cytidylate kinase; CMP 97.8 9.7E-06 3.3E-10 71.7 3.0 34 214-254 4-37 (208)
105 2jaq_A Deoxyguanosine kinase; 97.8 8.6E-05 2.9E-09 65.1 9.1 25 214-238 2-26 (205)
106 3ld9_A DTMP kinase, thymidylat 97.8 9.2E-05 3.1E-09 69.3 9.7 94 209-305 18-114 (223)
107 3foz_A TRNA delta(2)-isopenten 97.8 9.9E-05 3.4E-09 72.9 10.1 38 210-254 8-45 (316)
108 1jr3_A DNA polymerase III subu 97.7 3.5E-05 1.2E-09 74.0 6.5 58 159-238 7-64 (373)
109 1sxj_E Activator 1 40 kDa subu 97.7 8.7E-06 3E-10 78.1 1.7 56 159-236 5-60 (354)
110 3b9p_A CG5977-PA, isoform A; A 97.7 6.7E-05 2.3E-09 70.4 7.7 78 161-254 14-91 (297)
111 4b4t_L 26S protease subunit RP 97.7 8.2E-05 2.8E-09 76.3 8.7 75 165-254 178-252 (437)
112 1hqc_A RUVB; extended AAA-ATPa 97.7 5.1E-05 1.7E-09 71.7 6.6 82 161-265 5-86 (324)
113 2if2_A Dephospho-COA kinase; a 97.7 1.8E-05 6.2E-10 70.3 3.3 33 214-254 3-35 (204)
114 4b4t_J 26S protease regulatory 97.7 0.00013 4.5E-09 74.2 9.9 75 164-254 144-219 (405)
115 4b4t_M 26S protease regulatory 97.7 0.00011 3.8E-09 75.3 9.4 76 164-254 177-252 (434)
116 3d8b_A Fidgetin-like protein 1 97.7 5.2E-05 1.8E-09 74.4 6.4 81 158-254 74-154 (357)
117 1rz3_A Hypothetical protein rb 97.7 5.6E-05 1.9E-09 67.9 6.1 45 209-255 19-63 (201)
118 1ex7_A Guanylate kinase; subst 97.6 2E-06 7E-11 78.4 -3.5 83 214-307 3-101 (186)
119 3ney_A 55 kDa erythrocyte memb 97.6 4.8E-06 1.6E-10 76.8 -1.3 27 210-236 17-43 (197)
120 2qp9_X Vacuolar protein sortin 97.6 3.7E-05 1.3E-09 75.7 4.9 84 154-253 37-120 (355)
121 2h92_A Cytidylate kinase; ross 97.6 2.1E-05 7.2E-10 70.6 2.9 36 212-254 3-38 (219)
122 3r20_A Cytidylate kinase; stru 97.6 2.4E-05 8.3E-10 73.8 3.4 38 210-254 7-44 (233)
123 3hdt_A Putative kinase; struct 97.6 0.00012 4.1E-09 68.2 8.0 37 211-254 13-49 (223)
124 3eph_A TRNA isopentenyltransfe 97.6 8.7E-05 3E-09 75.7 7.6 35 212-253 2-36 (409)
125 1ixz_A ATP-dependent metallopr 97.6 2.4E-05 8.2E-10 72.1 3.2 76 161-252 9-84 (254)
126 1q3t_A Cytidylate kinase; nucl 97.6 2.9E-05 1E-09 71.3 3.7 38 210-254 14-51 (236)
127 1sxj_B Activator 1 37 kDa subu 97.6 4.6E-05 1.6E-09 71.4 5.0 55 159-236 12-66 (323)
128 4b4t_K 26S protease regulatory 97.6 0.00017 5.9E-09 73.7 9.4 75 165-254 169-243 (428)
129 4b4t_H 26S protease regulatory 97.6 0.00016 5.6E-09 74.8 9.3 104 134-254 177-280 (467)
130 3d3q_A TRNA delta(2)-isopenten 97.6 5.5E-05 1.9E-09 75.3 5.5 35 212-253 7-41 (340)
131 3lv8_A DTMP kinase, thymidylat 97.6 0.00033 1.1E-08 66.0 10.5 93 210-304 25-121 (236)
132 4b4t_I 26S protease regulatory 97.6 0.00029 9.9E-09 72.4 10.9 77 163-254 177-253 (437)
133 3h4m_A Proteasome-activating n 97.6 0.00011 3.8E-09 68.4 7.2 76 164-254 13-88 (285)
134 1in4_A RUVB, holliday junction 97.6 8.1E-05 2.8E-09 72.3 6.4 74 157-253 14-87 (334)
135 3v9p_A DTMP kinase, thymidylat 97.6 0.00019 6.5E-09 67.2 8.7 91 209-304 22-118 (227)
136 2bbw_A Adenylate kinase 4, AK4 97.6 2.3E-05 7.8E-10 72.4 2.4 36 211-253 26-61 (246)
137 1jbk_A CLPB protein; beta barr 97.6 6.6E-05 2.3E-09 63.8 5.0 56 158-236 12-67 (195)
138 3asz_A Uridine kinase; cytidin 97.6 6.4E-05 2.2E-09 67.1 5.0 40 210-254 4-43 (211)
139 1sxj_D Activator 1 41 kDa subu 97.6 3.1E-05 1.1E-09 73.8 3.1 75 157-254 26-101 (353)
140 2x8a_A Nuclear valosin-contain 97.5 6.9E-05 2.4E-09 71.3 5.4 74 165-254 7-81 (274)
141 3vfd_A Spastin; ATPase, microt 97.5 3.3E-05 1.1E-09 76.4 3.3 81 158-254 105-185 (389)
142 4e22_A Cytidylate kinase; P-lo 97.5 4E-05 1.4E-09 71.7 3.7 38 210-254 25-62 (252)
143 1a7j_A Phosphoribulokinase; tr 97.5 2.7E-05 9.3E-10 75.0 2.4 43 211-255 4-46 (290)
144 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.00014 4.9E-09 70.5 7.5 76 164-254 8-83 (322)
145 3tqc_A Pantothenate kinase; bi 97.5 0.00011 3.8E-09 72.4 6.7 47 209-255 89-135 (321)
146 2p65_A Hypothetical protein PF 97.5 6.8E-05 2.3E-09 64.0 4.1 56 158-236 12-67 (187)
147 3cf0_A Transitional endoplasmi 97.5 8.5E-05 2.9E-09 71.0 5.1 74 164-252 11-84 (301)
148 3eie_A Vacuolar protein sortin 97.5 0.00012 4.1E-09 70.5 6.2 77 161-253 11-87 (322)
149 3fdi_A Uncharacterized protein 97.5 0.00011 3.8E-09 66.9 5.6 35 212-253 6-40 (201)
150 3gmt_A Adenylate kinase; ssgci 97.5 0.00047 1.6E-08 65.1 9.9 33 213-252 9-41 (230)
151 4i1u_A Dephospho-COA kinase; s 97.5 0.00047 1.6E-08 64.2 9.7 35 212-254 9-43 (210)
152 3nwj_A ATSK2; P loop, shikimat 97.4 4.9E-05 1.7E-09 72.1 2.9 36 212-254 48-83 (250)
153 2chq_A Replication factor C sm 97.4 5.7E-05 1.9E-09 70.6 3.2 71 160-253 9-79 (319)
154 1iy2_A ATP-dependent metallopr 97.4 9.6E-05 3.3E-09 69.4 4.8 73 164-252 36-108 (278)
155 4tmk_A Protein (thymidylate ki 97.4 0.00082 2.8E-08 62.1 10.8 92 212-305 3-100 (213)
156 2ce7_A Cell division protein F 97.4 0.00017 5.9E-09 74.6 6.8 74 165-254 13-86 (476)
157 3cr8_A Sulfate adenylyltranfer 97.4 0.00036 1.2E-08 73.4 9.3 44 210-254 367-410 (552)
158 3ec2_A DNA replication protein 97.4 8.4E-05 2.9E-09 65.0 3.6 42 211-253 37-78 (180)
159 4hlc_A DTMP kinase, thymidylat 97.4 0.0014 4.9E-08 59.9 12.0 88 213-305 3-92 (205)
160 3tmk_A Thymidylate kinase; pho 97.4 0.00079 2.7E-08 62.5 10.3 88 211-305 4-94 (216)
161 3hjn_A DTMP kinase, thymidylat 97.4 0.0008 2.7E-08 61.0 10.1 87 214-305 2-89 (197)
162 2r62_A Cell division protease 97.4 3.3E-05 1.1E-09 71.5 0.5 74 164-253 7-80 (268)
163 4fcw_A Chaperone protein CLPB; 97.3 0.00064 2.2E-08 63.7 9.3 73 168-256 17-89 (311)
164 3t15_A Ribulose bisphosphate c 97.3 9.9E-05 3.4E-09 70.6 3.5 40 209-253 33-72 (293)
165 2j41_A Guanylate kinase; GMP, 97.3 0.00012 4.2E-09 64.5 3.8 27 210-236 4-30 (207)
166 3c8u_A Fructokinase; YP_612366 97.3 0.00018 6E-09 64.8 4.8 43 210-254 20-62 (208)
167 2zan_A Vacuolar protein sortin 97.3 0.00011 3.6E-09 74.7 3.5 78 162-254 128-205 (444)
168 1sq5_A Pantothenate kinase; P- 97.3 0.00024 8.3E-09 68.4 5.9 47 209-255 77-123 (308)
169 1odf_A YGR205W, hypothetical 3 97.3 0.0005 1.7E-08 66.3 7.9 55 209-263 28-83 (290)
170 2dhr_A FTSH; AAA+ protein, hex 97.3 0.00036 1.2E-08 72.5 7.4 76 163-254 26-101 (499)
171 3uk6_A RUVB-like 2; hexameric 97.3 0.00021 7.2E-09 68.8 5.3 71 160-251 35-106 (368)
172 3tau_A Guanylate kinase, GMP k 97.3 0.00015 5.1E-09 65.5 3.9 27 210-236 6-32 (208)
173 3pvs_A Replication-associated 97.3 0.00035 1.2E-08 71.3 7.0 67 158-252 16-85 (447)
174 3bos_A Putative DNA replicatio 97.2 0.00045 1.5E-08 61.4 6.6 42 211-254 51-92 (242)
175 2jeo_A Uridine-cytidine kinase 97.2 0.0002 6.9E-09 66.2 4.3 51 204-254 17-70 (245)
176 3syl_A Protein CBBX; photosynt 97.2 0.00055 1.9E-08 64.3 7.4 78 169-254 32-111 (309)
177 2w58_A DNAI, primosome compone 97.2 0.00037 1.3E-08 61.7 5.7 40 212-253 54-93 (202)
178 3tr0_A Guanylate kinase, GMP k 97.2 0.00021 7.1E-09 63.0 3.9 27 210-236 5-31 (205)
179 2c9o_A RUVB-like 1; hexameric 97.2 0.00048 1.7E-08 69.8 7.0 68 166-254 35-102 (456)
180 1g8f_A Sulfate adenylyltransfe 97.2 0.00027 9.1E-09 73.9 5.1 43 210-252 393-435 (511)
181 3cf2_A TER ATPase, transitiona 97.2 0.00052 1.8E-08 75.3 7.4 71 165-250 201-271 (806)
182 1ofh_A ATP-dependent HSL prote 97.1 0.0007 2.4E-08 63.0 6.8 72 169-254 16-87 (310)
183 1kgd_A CASK, peripheral plasma 97.1 0.00029 1E-08 62.0 3.7 26 211-236 4-29 (180)
184 1fnn_A CDC6P, cell division co 97.1 0.0014 5E-08 62.7 8.8 39 214-254 46-85 (389)
185 3a00_A Guanylate kinase, GMP k 97.0 0.00028 9.4E-09 62.4 3.0 25 212-236 1-25 (186)
186 2qby_B CDC6 homolog 3, cell di 97.0 0.00087 3E-08 64.5 6.6 27 210-236 43-69 (384)
187 3te6_A Regulatory protein SIR3 97.0 0.0021 7.1E-08 63.2 9.3 52 209-260 42-98 (318)
188 3hws_A ATP-dependent CLP prote 97.0 0.0016 5.5E-08 63.4 8.3 71 170-253 17-87 (363)
189 2bjv_A PSP operon transcriptio 97.0 0.0011 3.7E-08 61.4 6.5 40 213-254 30-69 (265)
190 2e87_A Hypothetical protein PH 97.0 0.0023 7.9E-08 62.7 9.2 27 210-236 165-191 (357)
191 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00044 1.5E-08 61.3 3.7 42 210-253 21-62 (235)
192 2dr3_A UPF0273 protein PH0284; 96.9 0.00062 2.1E-08 61.3 4.3 42 210-253 21-62 (247)
193 3p32_A Probable GTPase RV1496/ 96.9 0.0015 5.3E-08 64.0 7.2 42 209-252 76-117 (355)
194 2kjq_A DNAA-related protein; s 96.9 0.00068 2.3E-08 58.8 4.2 43 211-255 35-77 (149)
195 1yrb_A ATP(GTP)binding protein 96.9 0.0014 4.7E-08 60.1 6.3 41 209-252 11-51 (262)
196 1p5z_B DCK, deoxycytidine kina 96.9 0.00033 1.1E-08 65.3 2.1 28 209-236 21-48 (263)
197 3n70_A Transport activator; si 96.9 0.0018 6.1E-08 55.1 6.5 38 214-254 26-63 (145)
198 1gtv_A TMK, thymidylate kinase 96.8 0.00027 9.4E-09 62.7 1.3 24 214-237 2-25 (214)
199 2r44_A Uncharacterized protein 96.8 0.0015 5.3E-08 62.3 6.6 64 157-250 16-79 (331)
200 1g41_A Heat shock protein HSLU 96.8 0.0019 6.3E-08 66.5 7.3 71 169-254 16-87 (444)
201 2ocp_A DGK, deoxyguanosine kin 96.8 0.00077 2.6E-08 61.9 4.0 26 211-236 1-26 (241)
202 2cvh_A DNA repair and recombin 96.8 0.0012 4.2E-08 58.4 5.1 38 210-252 18-55 (220)
203 3hu3_A Transitional endoplasmi 96.8 0.0016 5.4E-08 67.3 6.6 78 161-253 197-274 (489)
204 3aez_A Pantothenate kinase; tr 96.8 0.0014 5E-08 63.7 5.8 45 209-254 87-132 (312)
205 1d2n_A N-ethylmaleimide-sensit 96.7 0.0013 4.4E-08 61.2 5.2 35 210-249 62-96 (272)
206 2ehv_A Hypothetical protein PH 96.7 0.00082 2.8E-08 60.6 3.7 44 210-254 28-71 (251)
207 1lvg_A Guanylate kinase, GMP k 96.7 0.0006 2.1E-08 61.3 2.8 26 211-236 3-28 (198)
208 1l8q_A Chromosomal replication 96.7 0.00099 3.4E-08 63.6 4.4 42 211-254 36-77 (324)
209 3lnc_A Guanylate kinase, GMP k 96.7 0.00048 1.6E-08 62.7 1.9 28 209-236 24-52 (231)
210 4a74_A DNA repair and recombin 96.7 0.0018 6.2E-08 57.6 5.3 43 210-252 23-69 (231)
211 2v1u_A Cell division control p 96.6 0.0017 5.9E-08 61.9 5.4 46 210-255 42-91 (387)
212 1ypw_A Transitional endoplasmi 96.6 0.0014 4.7E-08 71.6 5.2 76 163-253 199-274 (806)
213 1xjc_A MOBB protein homolog; s 96.6 0.0015 5.1E-08 58.8 4.5 37 212-250 4-40 (169)
214 1n0w_A DNA repair protein RAD5 96.6 0.0017 5.9E-08 58.3 4.9 43 210-252 22-68 (243)
215 1s96_A Guanylate kinase, GMP k 96.6 0.0012 4.2E-08 61.0 3.7 28 209-236 13-40 (219)
216 2qmh_A HPR kinase/phosphorylas 96.6 0.0018 6E-08 60.5 4.8 37 210-254 32-68 (205)
217 1znw_A Guanylate kinase, GMP k 96.6 0.0013 4.3E-08 59.1 3.8 27 210-236 18-44 (207)
218 3m6a_A ATP-dependent protease 96.5 0.013 4.4E-07 61.0 11.5 39 211-254 107-145 (543)
219 1um8_A ATP-dependent CLP prote 96.5 0.002 7E-08 62.9 4.9 39 211-254 71-109 (376)
220 1z6g_A Guanylate kinase; struc 96.5 0.0013 4.4E-08 60.1 3.2 27 210-236 21-47 (218)
221 1ye8_A Protein THEP1, hypothet 96.4 0.0015 5.2E-08 58.3 3.3 24 214-237 2-25 (178)
222 2eyu_A Twitching motility prot 96.4 0.0021 7E-08 61.0 4.4 42 210-253 23-64 (261)
223 2qgz_A Helicase loader, putati 96.4 0.0041 1.4E-07 60.0 6.4 41 212-253 152-192 (308)
224 1cr0_A DNA primase/helicase; R 96.4 0.0026 9E-08 59.9 4.8 42 210-252 33-74 (296)
225 2p67_A LAO/AO transport system 96.4 0.0015 5.1E-08 63.9 3.1 43 210-254 54-96 (341)
226 3k1j_A LON protease, ATP-depen 96.4 0.0033 1.1E-07 66.0 5.9 65 161-252 34-98 (604)
227 1htw_A HI0065; nucleotide-bind 96.4 0.0025 8.7E-08 56.1 4.2 27 210-236 31-57 (158)
228 3pxg_A Negative regulator of g 96.3 0.0026 8.9E-08 64.9 4.8 57 157-236 169-225 (468)
229 1c9k_A COBU, adenosylcobinamid 96.3 0.0022 7.6E-08 58.3 3.8 33 214-252 1-33 (180)
230 2qby_A CDC6 homolog 1, cell di 96.3 0.0025 8.6E-08 60.6 4.2 44 210-253 43-87 (386)
231 2orw_A Thymidine kinase; TMTK, 96.3 0.0024 8.1E-08 57.2 3.8 25 212-236 3-27 (184)
232 3hr8_A Protein RECA; alpha and 96.3 0.0029 9.9E-08 63.1 4.6 43 210-254 59-101 (356)
233 2b8t_A Thymidine kinase; deoxy 96.1 0.0044 1.5E-07 57.8 4.6 37 210-248 10-46 (223)
234 3zq6_A Putative arsenical pump 96.0 0.0064 2.2E-07 58.8 5.6 39 212-252 14-52 (324)
235 2zr9_A Protein RECA, recombina 96.0 0.004 1.4E-07 61.6 4.2 42 210-253 59-100 (349)
236 2z4s_A Chromosomal replication 96.0 0.0053 1.8E-07 62.1 5.1 43 212-254 130-172 (440)
237 1qvr_A CLPB protein; coiled co 96.0 0.0049 1.7E-07 67.3 5.1 57 157-236 159-215 (854)
238 2vp4_A Deoxynucleoside kinase; 96.0 0.0031 1.1E-07 57.6 3.0 27 209-235 17-43 (230)
239 1mv5_A LMRA, multidrug resista 96.0 0.0047 1.6E-07 57.6 4.2 45 204-251 20-64 (243)
240 2r2a_A Uncharacterized protein 96.0 0.0076 2.6E-07 55.1 5.5 44 211-254 4-51 (199)
241 1a5t_A Delta prime, HOLB; zinc 96.0 0.019 6.4E-07 55.5 8.6 30 209-238 21-50 (334)
242 2www_A Methylmalonic aciduria 96.0 0.0061 2.1E-07 59.9 5.1 41 211-253 73-113 (349)
243 1g8p_A Magnesium-chelatase 38 95.9 0.0029 9.8E-08 60.2 2.5 54 161-237 17-70 (350)
244 3iqw_A Tail-anchored protein t 95.9 0.0082 2.8E-07 59.1 5.8 42 209-252 13-54 (334)
245 1nlf_A Regulatory protein REPA 95.9 0.0064 2.2E-07 57.0 4.8 43 210-253 28-79 (279)
246 3tif_A Uncharacterized ABC tra 95.9 0.0037 1.3E-07 58.2 3.1 43 209-254 28-70 (235)
247 2qm8_A GTPase/ATPase; G protei 95.9 0.0061 2.1E-07 59.7 4.8 42 209-252 52-93 (337)
248 1r6b_X CLPA protein; AAA+, N-t 95.9 0.037 1.3E-06 59.2 11.2 39 212-255 488-526 (758)
249 1u94_A RECA protein, recombina 95.9 0.0052 1.8E-07 61.0 4.3 42 210-253 61-102 (356)
250 3pxi_A Negative regulator of g 95.9 0.0056 1.9E-07 65.7 4.8 57 157-236 169-225 (758)
251 4g1u_C Hemin import ATP-bindin 95.9 0.0043 1.5E-07 59.0 3.5 43 209-254 34-76 (266)
252 2wsm_A Hydrogenase expression/ 95.9 0.012 4E-07 52.2 6.2 41 211-254 29-69 (221)
253 3ug7_A Arsenical pump-driving 95.9 0.0073 2.5E-07 59.3 5.2 42 209-252 23-64 (349)
254 2ewv_A Twitching motility prot 95.9 0.0052 1.8E-07 61.1 4.1 27 210-236 134-160 (372)
255 1np6_A Molybdopterin-guanine d 95.9 0.0061 2.1E-07 54.6 4.2 24 213-236 7-30 (174)
256 2woo_A ATPase GET3; tail-ancho 95.9 0.0081 2.8E-07 58.4 5.4 42 210-253 17-58 (329)
257 1svm_A Large T antigen; AAA+ f 95.8 0.0049 1.7E-07 61.9 3.8 28 209-236 166-193 (377)
258 3upu_A ATP-dependent DNA helic 95.8 0.0088 3E-07 60.5 5.7 58 156-236 12-69 (459)
259 1p9r_A General secretion pathw 95.8 0.0098 3.4E-07 60.4 6.0 40 211-253 166-205 (418)
260 2gno_A DNA polymerase III, gam 95.8 0.018 6.3E-07 55.7 7.7 40 212-251 18-58 (305)
261 2zts_A Putative uncharacterize 95.8 0.0049 1.7E-07 55.3 3.4 43 210-253 28-70 (251)
262 2pcj_A ABC transporter, lipopr 95.8 0.0036 1.2E-07 57.8 2.5 43 209-254 27-69 (224)
263 3end_A Light-independent proto 95.8 0.0076 2.6E-07 57.0 4.8 41 210-252 39-79 (307)
264 2r8r_A Sensor protein; KDPD, P 95.8 0.0099 3.4E-07 56.1 5.4 41 211-253 5-45 (228)
265 3kta_A Chromosome segregation 95.8 0.0059 2E-07 52.9 3.6 26 212-237 26-51 (182)
266 1qvr_A CLPB protein; coiled co 95.8 0.013 4.3E-07 64.1 7.0 41 213-255 589-629 (854)
267 1xx6_A Thymidine kinase; NESG, 95.8 0.0089 3E-07 54.3 4.9 38 210-249 6-43 (191)
268 2i3b_A HCR-ntpase, human cance 95.7 0.0045 1.5E-07 55.9 2.9 23 214-236 3-25 (189)
269 2cbz_A Multidrug resistance-as 95.7 0.0048 1.6E-07 57.5 3.1 32 205-236 24-55 (237)
270 1nij_A Hypothetical protein YJ 95.7 0.0072 2.5E-07 58.4 4.5 24 213-236 5-28 (318)
271 1v5w_A DMC1, meiotic recombina 95.7 0.012 4.1E-07 57.5 6.0 43 210-252 120-166 (343)
272 3ch4_B Pmkase, phosphomevalona 95.7 0.013 4.3E-07 54.4 5.8 46 209-263 8-53 (202)
273 2z43_A DNA repair and recombin 95.7 0.0087 3E-07 57.8 4.9 43 210-252 105-151 (324)
274 3cio_A ETK, tyrosine-protein k 95.7 0.0086 3E-07 57.5 4.8 43 210-254 102-145 (299)
275 1r6b_X CLPA protein; AAA+, N-t 95.7 0.0081 2.8E-07 64.2 5.0 57 157-236 175-231 (758)
276 2onk_A Molybdate/tungstate ABC 95.7 0.0057 1.9E-07 57.3 3.3 37 210-250 23-59 (240)
277 1ojl_A Transcriptional regulat 95.7 0.014 4.9E-07 56.0 6.2 41 212-254 25-65 (304)
278 3bfv_A CAPA1, CAPB2, membrane 95.6 0.0099 3.4E-07 56.3 4.9 42 211-254 81-123 (271)
279 3pxi_A Negative regulator of g 95.6 0.013 4.6E-07 62.8 6.5 43 211-255 519-562 (758)
280 1b0u_A Histidine permease; ABC 95.6 0.0056 1.9E-07 57.9 3.1 42 209-253 29-70 (262)
281 3bh0_A DNAB-like replicative h 95.6 0.011 3.6E-07 57.2 5.1 41 210-252 66-106 (315)
282 2zu0_C Probable ATP-dependent 95.6 0.0067 2.3E-07 57.5 3.6 44 209-253 43-86 (267)
283 3ea0_A ATPase, para family; al 95.6 0.014 4.9E-07 52.5 5.6 40 212-253 5-45 (245)
284 1tue_A Replication protein E1; 95.6 0.0088 3E-07 56.0 4.3 25 212-236 58-82 (212)
285 1ji0_A ABC transporter; ATP bi 95.6 0.0051 1.7E-07 57.3 2.6 42 209-253 29-70 (240)
286 2d2e_A SUFC protein; ABC-ATPas 95.6 0.006 2.1E-07 57.1 3.1 43 209-254 26-70 (250)
287 2olj_A Amino acid ABC transpor 95.5 0.0061 2.1E-07 58.0 3.1 42 209-253 47-88 (263)
288 3co5_A Putative two-component 95.5 0.0057 2E-07 51.9 2.6 32 215-252 30-61 (143)
289 3kjh_A CO dehydrogenase/acetyl 95.5 0.0087 3E-07 53.6 3.9 36 215-252 3-38 (254)
290 2pze_A Cystic fibrosis transme 95.5 0.0054 1.9E-07 56.7 2.6 28 209-236 31-58 (229)
291 1g6h_A High-affinity branched- 95.5 0.0054 1.8E-07 57.7 2.6 42 209-253 30-71 (257)
292 2ghi_A Transport protein; mult 95.5 0.0065 2.2E-07 57.4 3.1 42 208-253 42-83 (260)
293 2woj_A ATPase GET3; tail-ancho 95.5 0.013 4.4E-07 57.9 5.3 41 210-252 16-58 (354)
294 1vpl_A ABC transporter, ATP-bi 95.5 0.0065 2.2E-07 57.5 3.1 42 209-253 38-79 (256)
295 3jvv_A Twitching mobility prot 95.5 0.0085 2.9E-07 59.5 4.1 26 211-236 122-147 (356)
296 1lw7_A Transcriptional regulat 95.5 0.011 3.9E-07 57.8 4.9 26 212-237 170-195 (365)
297 3tqf_A HPR(Ser) kinase; transf 95.5 0.013 4.4E-07 53.7 4.9 25 211-235 15-39 (181)
298 1dek_A Deoxynucleoside monopho 95.5 0.014 5E-07 55.0 5.4 26 213-238 2-27 (241)
299 1xp8_A RECA protein, recombina 95.5 0.0092 3.1E-07 59.5 4.2 42 210-253 72-113 (366)
300 1ihu_A Arsenical pump-driving 95.5 0.011 3.6E-07 61.7 4.8 42 209-252 5-46 (589)
301 2ff7_A Alpha-hemolysin translo 95.5 0.0059 2E-07 57.3 2.6 43 209-254 32-74 (247)
302 2yz2_A Putative ABC transporte 95.5 0.0069 2.4E-07 57.3 3.1 28 209-236 30-57 (266)
303 2ixe_A Antigen peptide transpo 95.4 0.007 2.4E-07 57.6 3.1 42 209-253 42-83 (271)
304 3gfo_A Cobalt import ATP-bindi 95.4 0.0056 1.9E-07 58.7 2.5 42 209-253 31-72 (275)
305 3nh6_A ATP-binding cassette SU 95.4 0.0058 2E-07 59.6 2.6 44 209-255 77-120 (306)
306 1sgw_A Putative ABC transporte 95.4 0.005 1.7E-07 56.8 2.0 41 209-252 32-72 (214)
307 2hf9_A Probable hydrogenase ni 95.4 0.035 1.2E-06 49.3 7.4 39 211-252 37-75 (226)
308 2oap_1 GSPE-2, type II secreti 95.4 0.0098 3.4E-07 61.8 4.3 40 211-253 259-299 (511)
309 4dzz_A Plasmid partitioning pr 95.4 0.0089 3.1E-07 52.3 3.4 40 213-254 3-42 (206)
310 1pzn_A RAD51, DNA repair and r 95.4 0.015 5E-07 57.3 5.3 44 210-253 129-176 (349)
311 2v9p_A Replication protein E1; 95.4 0.0085 2.9E-07 58.5 3.6 28 209-236 123-150 (305)
312 2ga8_A Hypothetical 39.9 kDa p 95.4 0.018 6E-07 57.8 5.9 26 213-238 25-50 (359)
313 3io3_A DEHA2D07832P; chaperone 95.4 0.015 5.1E-07 57.5 5.4 40 210-251 16-57 (348)
314 2gza_A Type IV secretion syste 95.3 0.011 3.9E-07 58.3 4.4 36 211-249 174-209 (361)
315 3b85_A Phosphate starvation-in 95.3 0.0066 2.2E-07 55.7 2.4 24 212-235 22-45 (208)
316 2qi9_C Vitamin B12 import ATP- 95.3 0.0068 2.3E-07 57.1 2.6 40 210-253 24-63 (249)
317 2fna_A Conserved hypothetical 95.3 0.021 7.3E-07 53.5 5.9 35 214-253 32-66 (357)
318 2orv_A Thymidine kinase; TP4A 95.3 0.017 5.8E-07 54.8 5.2 44 204-249 11-54 (234)
319 3la6_A Tyrosine-protein kinase 95.3 0.02 6.9E-07 54.8 5.8 43 210-254 91-133 (286)
320 2nq2_C Hypothetical ABC transp 95.3 0.007 2.4E-07 57.0 2.5 28 209-236 28-55 (253)
321 2i1q_A DNA repair and recombin 95.3 0.016 5.5E-07 55.5 5.1 43 210-252 96-152 (322)
322 1cp2_A CP2, nitrogenase iron p 95.3 0.016 5.6E-07 53.2 4.9 39 214-254 3-41 (269)
323 2ihy_A ABC transporter, ATP-bi 95.2 0.0074 2.5E-07 57.8 2.6 41 209-252 44-84 (279)
324 1f2t_A RAD50 ABC-ATPase; DNA d 95.2 0.013 4.4E-07 50.6 3.8 26 211-236 22-47 (149)
325 1w5s_A Origin recognition comp 95.2 0.02 6.7E-07 55.4 5.4 27 210-236 48-76 (412)
326 4ag6_A VIRB4 ATPase, type IV s 95.1 0.017 5.8E-07 56.8 4.9 46 214-263 37-82 (392)
327 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.012 4.1E-07 57.5 3.7 35 212-249 171-205 (330)
328 3k9g_A PF-32 protein; ssgcid, 95.1 0.015 5.3E-07 53.6 4.2 41 211-254 27-67 (267)
329 1g3q_A MIND ATPase, cell divis 95.0 0.018 6.1E-07 51.8 4.2 39 213-253 4-42 (237)
330 2ph1_A Nucleotide-binding prot 95.0 0.022 7.6E-07 52.8 4.9 42 211-254 18-59 (262)
331 3rlf_A Maltose/maltodextrin im 94.9 0.015 5.1E-07 58.6 3.9 42 209-253 26-67 (381)
332 2j9r_A Thymidine kinase; TK1, 94.9 0.023 7.9E-07 53.1 4.8 38 210-249 26-63 (214)
333 2f1r_A Molybdopterin-guanine d 94.9 0.0082 2.8E-07 53.5 1.7 41 213-253 3-43 (171)
334 3lda_A DNA repair protein RAD5 94.9 0.021 7.2E-07 57.6 4.9 43 210-252 176-222 (400)
335 3fkq_A NTRC-like two-domain pr 94.9 0.039 1.3E-06 54.3 6.7 39 211-251 143-181 (373)
336 2afh_E Nitrogenase iron protei 94.9 0.019 6.6E-07 53.7 4.3 39 214-254 4-42 (289)
337 2bbs_A Cystic fibrosis transme 94.9 0.012 4.3E-07 56.6 3.0 34 203-236 55-88 (290)
338 2oze_A ORF delta'; para, walke 94.8 0.027 9.3E-07 52.8 5.2 41 212-254 35-77 (298)
339 1hyq_A MIND, cell division inh 94.8 0.024 8.2E-07 51.9 4.7 39 213-253 4-42 (263)
340 3q9l_A Septum site-determining 94.8 0.02 6.9E-07 52.0 4.2 38 213-252 4-41 (260)
341 2r6a_A DNAB helicase, replicat 94.8 0.022 7.6E-07 57.6 4.8 42 210-252 201-242 (454)
342 3sop_A Neuronal-specific septi 94.8 0.014 4.8E-07 55.5 3.1 23 214-236 4-26 (270)
343 2pjz_A Hypothetical protein ST 94.8 0.013 4.4E-07 55.7 2.8 33 203-236 22-54 (263)
344 3fvq_A Fe(3+) IONS import ATP- 94.8 0.016 5.3E-07 58.0 3.5 42 209-253 27-68 (359)
345 3cwq_A Para family chromosome 94.8 0.029 9.9E-07 50.6 5.0 39 213-254 2-40 (209)
346 2qen_A Walker-type ATPase; unk 94.8 0.024 8E-07 53.2 4.5 33 213-252 32-64 (350)
347 2ce2_X GTPase HRAS; signaling 94.8 0.017 5.7E-07 47.5 3.1 23 214-236 5-27 (166)
348 1oix_A RAS-related protein RAB 94.7 0.016 5.5E-07 50.7 3.1 25 212-236 29-53 (191)
349 4a1f_A DNAB helicase, replicat 94.7 0.022 7.4E-07 56.4 4.4 42 210-253 44-85 (338)
350 2f9l_A RAB11B, member RAS onco 94.7 0.017 5.8E-07 50.6 3.3 24 213-236 6-29 (199)
351 2yyz_A Sugar ABC transporter, 94.7 0.017 6E-07 57.5 3.6 41 209-252 26-66 (359)
352 1z2a_A RAS-related protein RAB 94.7 0.018 6.3E-07 47.7 3.2 25 212-236 5-29 (168)
353 2dyk_A GTP-binding protein; GT 94.7 0.018 6.3E-07 47.5 3.1 22 215-236 4-25 (161)
354 1tf7_A KAIC; homohexamer, hexa 94.6 0.022 7.6E-07 58.7 4.4 41 210-253 37-79 (525)
355 2it1_A 362AA long hypothetical 94.6 0.018 6.3E-07 57.4 3.6 42 209-253 26-67 (362)
356 1pui_A ENGB, probable GTP-bind 94.6 0.012 4.2E-07 51.5 2.1 28 209-236 23-50 (210)
357 3cf2_A TER ATPase, transitiona 94.6 0.01 3.5E-07 65.2 1.8 38 210-252 509-546 (806)
358 1q57_A DNA primase/helicase; d 94.6 0.027 9.3E-07 57.5 4.8 43 210-253 240-282 (503)
359 1tf7_A KAIC; homohexamer, hexa 94.5 0.031 1.1E-06 57.6 5.2 41 210-252 279-319 (525)
360 1z47_A CYSA, putative ABC-tran 94.5 0.017 5.8E-07 57.5 3.1 41 209-252 38-78 (355)
361 1ypw_A Transitional endoplasmi 94.5 0.0087 3E-07 65.3 1.1 40 210-254 509-548 (806)
362 2fn4_A P23, RAS-related protei 94.5 0.025 8.6E-07 47.5 3.8 26 211-236 8-33 (181)
363 1v43_A Sugar-binding transport 94.5 0.02 6.9E-07 57.3 3.6 41 209-252 34-74 (372)
364 3b5x_A Lipid A export ATP-bind 94.5 0.025 8.6E-07 59.1 4.5 42 210-254 367-408 (582)
365 1kao_A RAP2A; GTP-binding prot 94.5 0.021 7.3E-07 47.0 3.2 24 213-236 4-27 (167)
366 1u8z_A RAS-related protein RAL 94.5 0.021 7.3E-07 47.1 3.2 25 212-236 4-28 (168)
367 3bgw_A DNAB-like replicative h 94.5 0.024 8.2E-07 57.7 4.2 43 210-254 195-237 (444)
368 3d31_A Sulfate/molybdate ABC t 94.5 0.015 5.3E-07 57.6 2.6 42 209-253 23-64 (348)
369 2wjg_A FEOB, ferrous iron tran 94.5 0.026 8.9E-07 48.2 3.7 25 211-235 6-30 (188)
370 2lkc_A Translation initiation 94.5 0.027 9.2E-07 47.5 3.8 27 210-236 6-32 (178)
371 3tui_C Methionine import ATP-b 94.5 0.021 7.3E-07 57.2 3.6 43 209-254 51-93 (366)
372 1wcv_1 SOJ, segregation protei 94.4 0.021 7.1E-07 52.7 3.3 41 211-253 6-46 (257)
373 3qks_A DNA double-strand break 94.4 0.025 8.7E-07 51.1 3.8 27 211-237 22-48 (203)
374 2gj8_A MNME, tRNA modification 94.4 0.024 8.3E-07 48.7 3.5 25 211-235 3-27 (172)
375 1ek0_A Protein (GTP-binding pr 94.4 0.023 7.9E-07 47.1 3.2 24 213-236 4-27 (170)
376 2q6t_A DNAB replication FORK h 94.4 0.035 1.2E-06 56.0 5.1 42 210-252 198-239 (444)
377 2wji_A Ferrous iron transport 94.4 0.024 8.2E-07 48.1 3.4 23 213-235 4-26 (165)
378 1g29_1 MALK, maltose transport 94.4 0.02 6.7E-07 57.3 3.1 39 209-250 26-64 (372)
379 1z0j_A RAB-22, RAS-related pro 94.3 0.024 8.3E-07 47.1 3.2 24 213-236 7-30 (170)
380 2ged_A SR-beta, signal recogni 94.3 0.029 9.9E-07 48.3 3.7 27 210-236 46-72 (193)
381 2erx_A GTP-binding protein DI- 94.3 0.024 8.1E-07 47.1 3.0 23 213-235 4-26 (172)
382 3b60_A Lipid A export ATP-bind 94.3 0.023 8E-07 59.3 3.6 42 210-254 367-408 (582)
383 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.026 8.9E-07 47.5 3.2 25 212-236 7-31 (177)
384 1g16_A RAS-related protein SEC 94.2 0.025 8.6E-07 47.0 3.1 24 213-236 4-27 (170)
385 3clv_A RAB5 protein, putative; 94.2 0.039 1.3E-06 46.9 4.3 27 210-236 5-31 (208)
386 3gd7_A Fusion complex of cysti 94.2 0.025 8.7E-07 56.9 3.5 42 209-254 44-85 (390)
387 2vhj_A Ntpase P4, P4; non- hyd 94.2 0.026 8.9E-07 56.1 3.5 35 211-250 122-156 (331)
388 1z08_A RAS-related protein RAB 94.2 0.027 9.2E-07 46.9 3.1 25 212-236 6-30 (170)
389 1oxx_K GLCV, glucose, ABC tran 94.2 0.016 5.4E-07 57.6 1.9 28 209-236 28-55 (353)
390 1ky3_A GTP-binding protein YPT 94.1 0.03 1E-06 47.0 3.4 26 211-236 7-32 (182)
391 1c1y_A RAS-related protein RAP 94.1 0.029 1E-06 46.5 3.3 24 213-236 4-27 (167)
392 1nrj_B SR-beta, signal recogni 94.1 0.033 1.1E-06 49.1 3.8 27 210-236 10-36 (218)
393 3io5_A Recombination and repai 94.1 0.027 9.2E-07 56.0 3.4 39 214-252 30-68 (333)
394 1z0f_A RAB14, member RAS oncog 94.1 0.029 9.8E-07 47.0 3.1 25 212-236 15-39 (179)
395 3e1s_A Exodeoxyribonuclease V, 94.1 0.034 1.2E-06 58.4 4.4 45 212-259 204-248 (574)
396 1upt_A ARL1, ADP-ribosylation 94.1 0.042 1.4E-06 45.8 4.1 27 210-236 5-31 (171)
397 1r2q_A RAS-related protein RAB 94.0 0.032 1.1E-06 46.3 3.3 24 212-235 6-29 (170)
398 3qf7_A RAD50; ABC-ATPase, ATPa 94.0 0.032 1.1E-06 55.1 3.8 24 212-235 23-46 (365)
399 1svi_A GTP-binding protein YSX 94.0 0.034 1.2E-06 47.8 3.5 25 211-235 22-46 (195)
400 3bc1_A RAS-related protein RAB 94.0 0.032 1.1E-06 47.3 3.3 26 211-236 10-35 (195)
401 3qkt_A DNA double-strand break 94.0 0.034 1.2E-06 54.0 3.8 28 210-237 21-48 (339)
402 2yv5_A YJEQ protein; hydrolase 93.9 0.032 1.1E-06 53.6 3.5 24 212-236 165-188 (302)
403 2hxs_A RAB-26, RAS-related pro 93.9 0.043 1.5E-06 46.1 3.9 25 211-235 5-29 (178)
404 3q85_A GTP-binding protein REM 93.9 0.033 1.1E-06 46.5 3.1 22 214-235 4-25 (169)
405 4a82_A Cystic fibrosis transme 93.9 0.019 6.5E-07 60.0 2.0 43 210-255 365-407 (578)
406 2nzj_A GTP-binding protein REM 93.9 0.038 1.3E-06 46.2 3.5 25 212-236 4-28 (175)
407 3q72_A GTP-binding protein RAD 93.9 0.03 1E-06 46.6 2.9 22 214-235 4-25 (166)
408 1u0j_A DNA replication protein 93.8 0.041 1.4E-06 53.0 4.0 25 212-236 104-128 (267)
409 2zej_A Dardarin, leucine-rich 93.8 0.028 9.4E-07 48.6 2.6 22 214-235 4-25 (184)
410 2yl4_A ATP-binding cassette SU 93.8 0.024 8.2E-07 59.4 2.6 42 210-254 368-409 (595)
411 2y8e_A RAB-protein 6, GH09086P 93.8 0.035 1.2E-06 46.5 3.1 24 213-236 15-38 (179)
412 3nbx_X ATPase RAVA; AAA+ ATPas 93.8 0.024 8.3E-07 58.8 2.5 24 214-237 43-66 (500)
413 2a9k_A RAS-related protein RAL 93.8 0.036 1.2E-06 46.8 3.2 25 212-236 18-42 (187)
414 2atv_A RERG, RAS-like estrogen 93.8 0.046 1.6E-06 47.4 3.9 27 210-236 26-52 (196)
415 3ez2_A Plasmid partition prote 93.8 0.09 3.1E-06 51.8 6.5 41 212-252 109-153 (398)
416 3qf4_B Uncharacterized ABC tra 93.8 0.027 9.2E-07 59.2 2.8 42 210-254 379-420 (598)
417 3qf4_A ABC transporter, ATP-bi 93.7 0.03 1E-06 58.8 3.1 43 210-255 367-409 (587)
418 3con_A GTPase NRAS; structural 93.7 0.035 1.2E-06 47.6 3.1 26 211-236 20-45 (190)
419 2bme_A RAB4A, RAS-related prot 93.7 0.036 1.2E-06 47.1 3.1 25 212-236 10-34 (186)
420 2efe_B Small GTP-binding prote 93.7 0.037 1.3E-06 46.7 3.1 26 211-236 11-36 (181)
421 2npi_A Protein CLP1; CLP1-PCF1 93.7 0.03 1E-06 57.4 3.0 26 211-236 137-162 (460)
422 1r8s_A ADP-ribosylation factor 93.7 0.041 1.4E-06 45.6 3.3 22 215-236 3-24 (164)
423 3tw8_B RAS-related protein RAB 93.7 0.035 1.2E-06 46.6 2.9 25 211-235 8-32 (181)
424 1z6t_A APAF-1, apoptotic prote 93.7 0.11 3.7E-06 53.3 7.1 26 210-235 145-170 (591)
425 3pqc_A Probable GTP-binding pr 93.7 0.034 1.1E-06 47.4 2.8 23 214-236 25-47 (195)
426 3tkl_A RAS-related protein RAB 93.7 0.04 1.4E-06 47.2 3.3 26 211-236 15-40 (196)
427 4dsu_A GTPase KRAS, isoform 2B 93.6 0.037 1.3E-06 46.9 3.1 25 212-236 4-28 (189)
428 3ozx_A RNAse L inhibitor; ATP 93.6 0.039 1.3E-06 57.6 3.7 28 209-236 22-49 (538)
429 1yqt_A RNAse L inhibitor; ATP- 93.6 0.037 1.3E-06 57.7 3.5 27 210-236 45-71 (538)
430 2g6b_A RAS-related protein RAB 93.6 0.041 1.4E-06 46.4 3.2 26 211-236 9-34 (180)
431 2cxx_A Probable GTP-binding pr 93.6 0.038 1.3E-06 47.0 3.0 22 215-236 4-25 (190)
432 1knx_A Probable HPR(Ser) kinas 93.5 0.052 1.8E-06 53.3 4.3 26 210-235 145-170 (312)
433 1ko7_A HPR kinase/phosphatase; 93.5 0.07 2.4E-06 52.4 5.2 25 211-235 143-167 (314)
434 2xj4_A MIPZ; replication, cell 93.5 0.042 1.4E-06 51.7 3.4 38 213-252 6-43 (286)
435 2h17_A ADP-ribosylation factor 93.5 0.044 1.5E-06 46.9 3.3 26 210-235 19-44 (181)
436 1tq4_A IIGP1, interferon-induc 93.5 0.11 3.6E-06 52.8 6.6 26 211-236 68-93 (413)
437 2oil_A CATX-8, RAS-related pro 93.5 0.043 1.5E-06 47.3 3.2 25 212-236 25-49 (193)
438 2rcn_A Probable GTPase ENGC; Y 93.5 0.04 1.4E-06 55.0 3.3 25 212-236 215-239 (358)
439 2qag_B Septin-6, protein NEDD5 93.4 0.036 1.2E-06 56.6 3.1 27 210-236 38-66 (427)
440 1moz_A ARL1, ADP-ribosylation 93.4 0.039 1.3E-06 46.7 2.8 25 210-234 16-40 (183)
441 3kkq_A RAS-related protein M-R 93.4 0.056 1.9E-06 45.9 3.8 26 211-236 17-42 (183)
442 1mh1_A RAC1; GTP-binding, GTPa 93.4 0.046 1.6E-06 46.2 3.3 24 213-236 6-29 (186)
443 3t1o_A Gliding protein MGLA; G 93.4 0.048 1.6E-06 46.4 3.3 25 212-236 14-38 (198)
444 1m7b_A RND3/RHOE small GTP-bin 93.3 0.046 1.6E-06 46.9 3.1 26 211-236 6-31 (184)
445 2xtp_A GTPase IMAP family memb 93.3 0.055 1.9E-06 49.6 3.8 28 209-236 19-46 (260)
446 2gf0_A GTP-binding protein DI- 93.3 0.068 2.3E-06 45.9 4.2 26 210-235 6-31 (199)
447 1x3s_A RAS-related protein RAB 93.2 0.05 1.7E-06 46.5 3.2 25 212-236 15-39 (195)
448 1vg8_A RAS-related protein RAB 93.2 0.053 1.8E-06 47.0 3.4 26 211-236 7-32 (207)
449 1u0l_A Probable GTPase ENGC; p 93.2 0.038 1.3E-06 52.9 2.7 25 212-236 169-193 (301)
450 1ihu_A Arsenical pump-driving 93.2 0.08 2.7E-06 55.1 5.2 41 211-253 326-366 (589)
451 2qu8_A Putative nucleolar GTP- 93.1 0.062 2.1E-06 48.2 3.8 26 210-235 27-52 (228)
452 2bov_A RAla, RAS-related prote 93.1 0.063 2.1E-06 46.4 3.7 25 212-236 14-38 (206)
453 3t5g_A GTP-binding protein RHE 93.1 0.052 1.8E-06 46.0 3.1 24 212-235 6-29 (181)
454 2gf9_A RAS-related protein RAB 93.1 0.053 1.8E-06 46.6 3.2 25 212-236 22-46 (189)
455 3lxx_A GTPase IMAP family memb 93.1 0.051 1.8E-06 49.3 3.2 27 210-236 27-53 (239)
456 1w4r_A Thymidine kinase; type 93.1 0.083 2.8E-06 48.7 4.6 39 210-250 18-56 (195)
457 1fzq_A ADP-ribosylation factor 93.0 0.067 2.3E-06 46.1 3.8 26 210-235 14-39 (181)
458 3o47_A ADP-ribosylation factor 93.0 0.15 5E-06 49.4 6.5 25 211-235 164-188 (329)
459 3e2i_A Thymidine kinase; Zn-bi 93.0 0.081 2.8E-06 49.7 4.5 38 210-249 26-63 (219)
460 1ksh_A ARF-like protein 2; sma 92.9 0.07 2.4E-06 45.5 3.7 27 210-236 16-42 (186)
461 1zbd_A Rabphilin-3A; G protein 92.9 0.052 1.8E-06 47.1 2.9 24 213-236 9-32 (203)
462 2obl_A ESCN; ATPase, hydrolase 92.9 0.088 3E-06 51.9 4.9 26 211-236 70-95 (347)
463 1m2o_B GTP-binding protein SAR 92.9 0.057 2E-06 47.0 3.2 25 211-235 22-46 (190)
464 1z06_A RAS-related protein RAB 92.9 0.06 2.1E-06 46.3 3.2 26 211-236 19-44 (189)
465 2fg5_A RAB-22B, RAS-related pr 92.9 0.056 1.9E-06 46.8 3.1 26 211-236 22-47 (192)
466 1zj6_A ADP-ribosylation factor 92.9 0.079 2.7E-06 45.5 3.9 26 210-235 14-39 (187)
467 3dz8_A RAS-related protein RAB 92.9 0.061 2.1E-06 46.4 3.2 25 212-236 23-47 (191)
468 3cmu_A Protein RECA, recombina 92.8 0.069 2.4E-06 63.9 4.6 43 210-254 1425-1467(2050)
469 2bcg_Y Protein YP2, GTP-bindin 92.8 0.058 2E-06 47.1 3.1 25 212-236 8-32 (206)
470 1w1w_A Structural maintenance 92.8 0.059 2E-06 53.9 3.5 28 210-237 24-51 (430)
471 3bwd_D RAC-like GTP-binding pr 92.8 0.074 2.5E-06 44.9 3.6 26 211-236 7-32 (182)
472 2a5j_A RAS-related protein RAB 92.8 0.062 2.1E-06 46.4 3.2 25 212-236 21-45 (191)
473 1yqt_A RNAse L inhibitor; ATP- 92.7 0.052 1.8E-06 56.6 3.1 27 210-236 310-336 (538)
474 3oes_A GTPase rhebl1; small GT 92.7 0.063 2.2E-06 46.8 3.2 26 211-236 23-48 (201)
475 3ihw_A Centg3; RAS, centaurin, 92.7 0.066 2.3E-06 46.5 3.2 26 211-236 19-44 (184)
476 3j16_B RLI1P; ribosome recycli 92.7 0.06 2E-06 57.2 3.5 27 210-236 101-127 (608)
477 2p5s_A RAS and EF-hand domain 92.7 0.08 2.7E-06 46.1 3.8 27 210-236 26-52 (199)
478 3auy_A DNA double-strand break 92.7 0.069 2.4E-06 52.4 3.7 25 210-234 23-47 (371)
479 3ice_A Transcription terminati 92.6 0.14 5E-06 52.2 6.0 84 211-303 173-265 (422)
480 3bk7_A ABC transporter ATP-bin 92.6 0.055 1.9E-06 57.4 3.1 27 210-236 380-406 (607)
481 1e69_A Chromosome segregation 92.6 0.047 1.6E-06 52.5 2.4 25 212-236 24-48 (322)
482 3reg_A RHO-like small GTPase; 92.5 0.07 2.4E-06 46.1 3.2 26 211-236 22-47 (194)
483 3c5c_A RAS-like protein 12; GD 92.5 0.069 2.4E-06 46.2 3.2 26 211-236 20-45 (187)
484 2iwr_A Centaurin gamma 1; ANK 92.5 0.052 1.8E-06 45.9 2.3 25 212-236 7-31 (178)
485 3euj_A Chromosome partition pr 92.5 0.064 2.2E-06 55.6 3.3 24 213-236 30-53 (483)
486 1zd9_A ADP-ribosylation factor 92.5 0.072 2.5E-06 46.0 3.2 27 210-236 20-46 (188)
487 3bk7_A ABC transporter ATP-bin 92.5 0.056 1.9E-06 57.3 3.0 27 210-236 115-141 (607)
488 4b3f_X DNA-binding protein smu 92.4 0.088 3E-06 55.5 4.4 47 214-263 207-253 (646)
489 3ozx_A RNAse L inhibitor; ATP 92.4 0.052 1.8E-06 56.7 2.6 27 210-236 292-318 (538)
490 2gk6_A Regulator of nonsense t 92.4 0.11 3.7E-06 54.8 5.0 49 214-264 197-245 (624)
491 2qtf_A Protein HFLX, GTP-bindi 92.4 0.16 5.6E-06 50.2 6.0 23 214-236 181-203 (364)
492 3k53_A Ferrous iron transport 92.4 0.065 2.2E-06 49.9 2.9 24 213-236 4-27 (271)
493 4aby_A DNA repair protein RECN 92.3 0.03 1E-06 55.0 0.7 27 210-237 59-85 (415)
494 3pg5_A Uncharacterized protein 92.3 0.046 1.6E-06 53.6 2.0 41 213-255 3-43 (361)
495 2qnr_A Septin-2, protein NEDD5 92.3 0.061 2.1E-06 51.6 2.7 23 213-235 19-41 (301)
496 1e9r_A Conjugal transfer prote 92.3 0.075 2.6E-06 52.8 3.5 37 212-250 53-89 (437)
497 1p6x_A Thymidine kinase; P-loo 92.3 0.063 2.2E-06 53.1 2.9 27 211-237 6-32 (334)
498 2fh5_B SR-beta, signal recogni 92.3 0.082 2.8E-06 46.4 3.3 26 211-236 6-31 (214)
499 2o52_A RAS-related protein RAB 92.2 0.075 2.6E-06 46.5 3.0 25 211-235 24-48 (200)
500 3cph_A RAS-related protein SEC 92.2 0.098 3.4E-06 45.5 3.8 26 211-236 19-44 (213)
No 1
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.43 E-value=3.9e-12 Score=132.54 Aligned_cols=198 Identities=16% Similarity=0.238 Sum_probs=128.5
Q ss_pred hHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHH
Q 015774 81 QLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMA 160 (400)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 160 (400)
-|.+|..++.|+.+++.+.|.++|++.+ |+.++++||++ .||.+|+|.+.. ..+++
T Consensus 195 ~~~~l~~~l~kt~~~l~~~l~~~~~~~~----ide~~l~el~~--------------~Ll~aDv~~~~~------~~l~~ 250 (503)
T 2yhs_A 195 FFARLKRSLLKTKENLGSGFISLFRGKK----IDDDLFEELEE--------------QLLIADVGVETT------RKIIT 250 (503)
T ss_dssp HHHHHHHHTHHHHTTSTTHHHHHHTTCB----CSHHHHHHHHH--------------HHHHTTCCHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC----CCHHHHHHHHH--------------HHHHcCCCHHHH------HHHHH
Confidence 4678999999999999999999998655 88999999999 999999999988 66666
Q ss_pred Hhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc
Q 015774 161 ATRKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS 239 (400)
Q Consensus 161 ~~r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~ 239 (400)
.++++-..+ +.....+...+...+.+ +.. ....++......+.+|.|.|++||||||+++.|+..+ .
T Consensus 251 ~l~~~~~~~~~~~~~~~~~~l~~~l~~---~l~-------~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll--~ 318 (503)
T 2yhs_A 251 NLTEGASRKQLRDAEALYGLLKEEMGE---ILA-------KVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF--E 318 (503)
T ss_dssp HHHHHHHHHTCCBGGGHHHHHHHHHHH---HHH-------TTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH--H
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHH---HhC-------CCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh--h
Confidence 666543322 22333444444444443 332 1122333335679999999999999999999999887 3
Q ss_pred CCCCCeEEEeCCccccchH--H--HHHHhcCCC--CChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHH
Q 015774 240 GAATNAVVVEADAFKETDV--I--YRALSSKGH--HDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFV 313 (400)
Q Consensus 240 ~~~~~avvIdaDefRe~D~--i--rk~L~~~G~--~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~r 313 (400)
..++.+.+.+.|.++.... + +......+. .......... +...+..++..|+++||-+|.++....
T Consensus 319 ~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t--------V~e~l~~a~~~~~DvVLIDTaGrl~~~ 390 (503)
T 2yhs_A 319 QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV--------IFDAIQAAKARNIDVLIADTAGRLQNK 390 (503)
T ss_dssp HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH--------HHHHHHHHHHTTCSEEEECCCCSCCCH
T ss_pred hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH--------HHHHHHHHHhcCCCEEEEeCCCccchh
Confidence 3455666667998874211 1 101111111 0111111111 222344466789999999998886665
Q ss_pred HHHHHHHHh
Q 015774 314 EQTIAMARN 322 (400)
Q Consensus 314 e~~i~~ark 322 (400)
..++..+++
T Consensus 391 ~~lm~EL~k 399 (503)
T 2yhs_A 391 SHLMEELKK 399 (503)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 566555443
No 2
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.42 E-value=4.2e-12 Score=124.30 Aligned_cols=189 Identities=18% Similarity=0.241 Sum_probs=126.7
Q ss_pred hHHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHH
Q 015774 81 QLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMA 160 (400)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~ 160 (400)
-+.||..++.|+.+++.+.|..+|.+.+ |+++.++||++ .||.+|++.+.+ ..+++
T Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~ 70 (306)
T 1vma_A 15 LFDFLKKGLQKTKETFFGRVVKLLKGKK----LDDETREELEE--------------LLIQADVGVETT------EYILE 70 (306)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHTTCC----CCHHHHHHHHH--------------HHHHTTCCHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHH--------------HHHHCCCCHHHH------HHHHH
Confidence 3679999999999999999999997444 88899999999 999999999988 77777
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
..++ .... +...+.+.+.+ +.. .. .|+......|.+|+|.|+|||||||++..|+..+ ..
T Consensus 71 ~~~~------~~~~-~~~~~~~~l~~---~l~-------~~-~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~ 130 (306)
T 1vma_A 71 RLEE------KDGD-ALESLKEIILE---ILN-------FD-TKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF--VD 130 (306)
T ss_dssp HHTT------CCSC-HHHHHHHHHHH---HTC-------SC-CCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH--HH
T ss_pred HHHh------cCHH-HHHHHHHHHHH---HhC-------CC-CCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH--Hh
Confidence 7776 1112 44444443333 431 00 1343335678999999999999999999999987 44
Q ss_pred CCCCeEEEeCCccccchHHHHHH---hcC-CC---C-ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHH
Q 015774 241 AATNAVVVEADAFKETDVIYRAL---SSK-GH---H-DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPF 312 (400)
Q Consensus 241 ~~~~avvIdaDefRe~D~irk~L---~~~-G~---~-~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~ 312 (400)
.+..+.+++.|.+|.... +++ ... +. + ....... ..+...+..++..++++||-+|......
T Consensus 131 ~g~kV~lv~~D~~r~~a~--eqL~~~~~~~gl~~~~~~s~~~~~--------~v~~~al~~a~~~~~dvvIiDtpg~~~~ 200 (306)
T 1vma_A 131 EGKSVVLAAADTFRAAAI--EQLKIWGERVGATVISHSEGADPA--------AVAFDAVAHALARNKDVVIIDTAGRLHT 200 (306)
T ss_dssp TTCCEEEEEECTTCHHHH--HHHHHHHHHHTCEEECCSTTCCHH--------HHHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred cCCEEEEEccccccHHHH--HHHHHHHHHcCCcEEecCCccCHH--------HHHHHHHHHHHhcCCCEEEEECCCchhh
Confidence 567889999999984221 111 100 10 0 0000111 1112234557788898777767776666
Q ss_pred HHHHHHHHHhh
Q 015774 313 VEQTIAMARNV 323 (400)
Q Consensus 313 re~~i~~arkv 323 (400)
.+.++..++++
T Consensus 201 ~~~l~~eL~~l 211 (306)
T 1vma_A 201 KKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 3
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.39 E-value=1.6e-11 Score=120.66 Aligned_cols=198 Identities=13% Similarity=0.141 Sum_probs=126.2
Q ss_pred HHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhh
Q 015774 85 LAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRK 164 (400)
Q Consensus 85 l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~ 164 (400)
+-.++.|+++++.+.|..+|++... ++++.++|||+ .||.+|++.+.+ ..+++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~~~ 63 (320)
T 1zu4_A 7 MEKAMLKSAFNFSKDIKKLSKKYKQ---ADDEFFEELED--------------VLIQTDMGMKMV------LKVSNLVRK 63 (320)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTCCC---CSHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCC---CCHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHH
Confidence 5678889999999999999987432 88899999999 999999999988 777777776
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
+-...-+.+. +...+.+ ++..+..... ...+..++......|.+|.|+|++|+||||++..|+..+ ...+..
T Consensus 64 ~~~~~~~~~~-~~~~~~~---~l~~~l~~~~--~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l--~~~g~k 135 (320)
T 1zu4_A 64 KTKRDTSFEN-IKDALVE---SLYQAYTDND--WTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY--AELGYK 135 (320)
T ss_dssp HCCTTCCHHH-HHHHHHH---HHHHHHHCSC--C----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCC
T ss_pred HHhhchhHHH-HHHHHHH---HHHHHhCccc--ccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCe
Confidence 4333323332 3333333 3333442110 000002343335678999999999999999999999987 445778
Q ss_pred eEEEeCCccccchH-HHHHHhc---C-C-----CCChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHH
Q 015774 245 AVVVEADAFKETDV-IYRALSS---K-G-----HHDDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVE 314 (400)
Q Consensus 245 avvIdaDefRe~D~-irk~L~~---~-G-----~~~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re 314 (400)
+.+++.|.++.... ....+.. . + .......... .+...+..++.+++|+||-+|.+.....+
T Consensus 136 Vllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~--------~~~~~l~~~~~~~yD~VIIDTpg~l~~~~ 207 (320)
T 1zu4_A 136 VLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPAS--------VVFDAIKKAKEQNYDLLLIDTAGRLQNKT 207 (320)
T ss_dssp EEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHH--------HHHHHHHHHHHTTCSEEEEECCCCGGGHH
T ss_pred EEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHH--------HHHHHHHHHHhcCCCEEEEcCCCcccccH
Confidence 99999999884311 1111211 1 1 0000011111 11223445678999999999988877655
Q ss_pred HHHHHHH
Q 015774 315 QTIAMAR 321 (400)
Q Consensus 315 ~~i~~ar 321 (400)
..+..+.
T Consensus 208 ~l~~eL~ 214 (320)
T 1zu4_A 208 NLMAELE 214 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 4
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.35 E-value=1.3e-11 Score=118.87 Aligned_cols=105 Identities=23% Similarity=0.363 Sum_probs=73.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
...|.+|+|+|+|||||||+++.|+++++ .+.++||+|++|...+-+..+... ...+..............
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~D~~R~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~~ 100 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDNDTFKQQHPNFDELVKL----YEKDVVKHVTPYSNRMTE 100 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECTHHHHTTSTTHHHHHHH----HGGGCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechHhHHhchhhHHHHHH----ccchhhhhhhHHHHHHHH
Confidence 45789999999999999999999999872 256999999998644433322211 000111111122233455
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
.++..++++|.+||+|+++.....+.+++..+++
T Consensus 101 ~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~ 134 (287)
T 1gvn_B 101 AIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQA 134 (287)
T ss_dssp HHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 6778889999999999999998877788777754
No 5
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.33 E-value=3.5e-11 Score=112.81 Aligned_cols=104 Identities=27% Similarity=0.471 Sum_probs=74.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC-CCCChhhHhHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK-GHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~-G~~~d~~~aa~~v~~~~~~~a 287 (400)
...|.+|+|+|+|||||||+++.|++.++ .+.+++++|.+|...+-+..+... |... . .........++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~~r~~~~~~~~i~~~~g~~~-~----~~~~~~~~~~~ 98 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDSFRSQHPHYLELQQEYGKDS-V----EYTKDFAGKMV 98 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGGGGTTSTTHHHHHTTCSSTT-H----HHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHHHHHhchhHHHHHHHcCchH-H----HHhhHHHHHHH
Confidence 46789999999999999999999999984 256899999998654433334332 2111 1 11111123344
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..++..+++.|.+||+|+++.....+..++..+++
T Consensus 99 ~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~ 133 (253)
T 2p5t_B 99 ESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKN 133 (253)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHH
Confidence 56777788899999999999988777788777754
No 6
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.19 E-value=1.2e-10 Score=113.52 Aligned_cols=138 Identities=16% Similarity=0.220 Sum_probs=97.4
Q ss_pred HHHHHHhhccccchhhHHHhhhcCCCcchhH-HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHh
Q 015774 84 KLAYEYLKKSKGCEDNIYEYFSKEAEPESLY-VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAAT 162 (400)
Q Consensus 84 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
+|..++-|+.+++. .|.++|.+... ++ ++.++|||+ .||.+|++.+.. ..+++..
T Consensus 2 ~~~~~l~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~ 57 (302)
T 3b9q_A 2 KVFSGFSKTRENLA-VIDELLLFWNL---AETDRVLDELEE--------------ALLVSDFGPKIT------VRIVERL 57 (302)
T ss_dssp HHHHHTHHHHHHHT-HHHHHHTTCCG---GGHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHH
T ss_pred hHHHHHHHHHHHHH-HHHHHHcCCCc---CCHHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHH
Confidence 68889999999999 99999975432 77 899999999 999999999988 6667766
Q ss_pred hhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 015774 163 RKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA 241 (400)
Q Consensus 163 r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~ 241 (400)
+++-... +.....+...+...+.+ +... .....|+......|.++.|.|++||||||+++.|+..+ ...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~l~~---~l~~-----~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l--~~~ 127 (302)
T 3b9q_A 58 REDIMSGKLKSGSEIKDALKESVLE---MLAK-----KNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL--KNE 127 (302)
T ss_dssp HHHHHTTSCCSHHHHHHHHHHHHHH---HHCC-------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH--HHT
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHH---HhCC-----cccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH--HHc
Confidence 6543222 22223344444433333 4310 00012444345679999999999999999999999987 334
Q ss_pred CCCeEEEeCCcccc
Q 015774 242 ATNAVVVEADAFKE 255 (400)
Q Consensus 242 ~~~avvIdaDefRe 255 (400)
++.+.+.+.|.++.
T Consensus 128 ~g~V~l~g~d~~r~ 141 (302)
T 3b9q_A 128 GTKVLMAAGDTFRA 141 (302)
T ss_dssp TCCEEEECCCCSCH
T ss_pred CCeEEEEeecccch
Confidence 56777778888873
No 7
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.12 E-value=2.6e-10 Score=98.76 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=65.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH-hccccCCCCCeEEEeCCccccchHHHHHHhcC--CCCChhhHhHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMK-ESFWSGAATNAVVVEADAFKETDVIYRALSSK--GHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~-~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~~~d~~~aa~~v~~~~~~~ae 288 (400)
|.+|+|+|+|||||||+++.|++ .+ +..+|+.|.++ ..+.+. +....+..... ........
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-------~~~~i~~d~~r------~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 65 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-------GFYNINRDDYR------QSIMAHEERDEYKYTKKKE---GIVTGMQF 65 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-------TEEEECHHHHH------HHHTTSCCGGGCCCCHHHH---HHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-------CcEEecHHHHH------HHhhCCCccchhhhchhhh---hHHHHHHH
Confidence 68999999999999999999998 56 44899988776 334331 10000111111 11233445
Q ss_pred HHHHHHH---hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 289 SLLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 289 ~lie~AL---~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
.++..++ +.|.+||+|+++....+++.+..++++
T Consensus 66 ~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~ 102 (181)
T 1ly1_A 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE 102 (181)
T ss_dssp HHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence 5777788 899999999999988888777766643
No 8
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.11 E-value=5.1e-10 Score=112.04 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=100.1
Q ss_pred hHHHHHHHHhhccccchhhHHHhhhcCCCcchhH-HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHH
Q 015774 81 QLCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLY-VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIM 159 (400)
Q Consensus 81 ~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 159 (400)
-|.+|..++-++.+.+. ++..+|.+... ++ .+.++||++ .||.+|++.+.. ..++
T Consensus 56 ~f~~l~~~l~~~~~~~~-~~~~l~~~~~~---~~~~~~~~~l~~--------------~Ll~adv~~~~~------~~~~ 111 (359)
T 2og2_A 56 DVEKVFSGFSKTRENLA-VIDELLLFWNL---AETDRVLDELEE--------------ALLVSDFGPKIT------VRIV 111 (359)
T ss_dssp HHHHHHHHTHHHHHHHT-HHHHHHTTCCG---GGHHHHHHHHHH--------------HHHHTTCCHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhcCCCc---CCHHHHHHHHHH--------------HHHHCCCCHHHH------HHHH
Confidence 56799999999988888 88888865443 77 999999999 999999999988 6677
Q ss_pred HHhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 160 AATRKQRFEK-VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 160 ~~~r~~rf~~-v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+..+++-... +.....+...+.+.+.+ +... ... ..|+....+.|.++.|.|++||||||+++.|+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~l~~----~~~-~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-- 181 (359)
T 2og2_A 112 ERLREDIMSGKLKSGSEIKDALKESVLE---MLAK----KNS-KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-- 181 (359)
T ss_dssp HHHHHHHHTTSCCSHHHHHHHHHHHHHH---HHCC----C----CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH--
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHH---HhCC----ccc-CCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc--
Confidence 7776643322 22223334443333333 4410 000 02444445689999999999999999999999987
Q ss_pred cCCCCCeEEEeCCcccc
Q 015774 239 SGAATNAVVVEADAFKE 255 (400)
Q Consensus 239 ~~~~~~avvIdaDefRe 255 (400)
...++.+.+.+.|.++.
T Consensus 182 ~~~~G~V~l~g~D~~r~ 198 (359)
T 2og2_A 182 KNEGTKVLMAAGDTFRA 198 (359)
T ss_dssp HHTTCCEEEECCCCSCH
T ss_pred cccCCEEEEeccccccc
Confidence 33456777788898873
No 9
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.10 E-value=2.5e-09 Score=110.03 Aligned_cols=187 Identities=18% Similarity=0.214 Sum_probs=107.8
Q ss_pred chhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhh
Q 015774 96 CEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDL 174 (400)
Q Consensus 96 ~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~ 174 (400)
+...+..+.++.+=.+.-..++++|+++ .||.+|.+.+.. ..+.+..++.-. +++....
T Consensus 10 l~~~~~~l~~~~~l~e~~~~~~l~ei~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~v~~~~ 69 (443)
T 3dm5_A 10 LANTLKKIARASSVDEALIKELVRDIQR--------------ALIQADVNVRLV------LQLTREIQRRALEEKPPAGI 69 (443)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHH--------------HHHHcCCChHHH------HHHHHHHHHHHhhccccccC
Confidence 4444555555555333445567889999 999999998877 444444444222 1222211
Q ss_pred -HHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 175 -KMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 175 -~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
....++..+.+++..++.. .. .++ ....+|.+|+++|+|||||||++..|+..+ ...+..+.++++|.+
T Consensus 70 ~~~~~v~~~l~~eL~~~L~~-----~~--~~~-~~~~~p~vIlivG~~G~GKTTt~~kLA~~l--~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 70 SKKEHIIKIVYEELTKFLGT-----EA--KPI-EIKEKPTILLMVGIQGSGKTTTVAKLARYF--QKRGYKVGVVCSDTW 139 (443)
T ss_dssp CHHHHHHHHHHHHHHHHTTS-----SC--CCC-CCCSSSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCCS
T ss_pred CcHHHHHHHHHHHHHHHhcC-----cc--ccc-ccCCCCeEEEEECcCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCc
Confidence 1223333334444444421 00 111 112368999999999999999999999987 556778999999999
Q ss_pred ccchHHHHHHh---cC-CCC----ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 254 KETDVIYRALS---SK-GHH----DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 254 Re~D~irk~L~---~~-G~~----~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
|... +++|. .. +.+ ....... ..+...+..+..+|+++||-+|.+....-...+...++
T Consensus 140 R~aa--~eqL~~~~~~~gvpv~~~~~~~dp~--------~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~ 206 (443)
T 3dm5_A 140 RPGA--YHQLRQLLDRYHIEVFGNPQEKDAI--------KLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQ 206 (443)
T ss_dssp STHH--HHHHHHHHGGGTCEEECCTTCCCHH--------HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred chhH--HHHHHHHHHhcCCcEEecCCCCCHH--------HHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHH
Confidence 9633 23332 11 110 0000111 12233456677789999888787765443444444433
No 10
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.04 E-value=1.7e-09 Score=109.15 Aligned_cols=79 Identities=29% Similarity=0.373 Sum_probs=64.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
...|.+|+|+|+|||||||+++.|++.+++ .+|+.|+++. + . ...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~-------~~i~~D~~~~----------------~--------~----~~~ 299 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGY-------VHVNRDTLGS----------------W--------Q----RCV 299 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTC-------EECCGGGSCS----------------H--------H----HHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCc-------EEEccchHHH----------------H--------H----HHH
Confidence 456899999999999999999999999865 8999998852 0 1 112
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..+..++.+|.+||+|+|+.....+..++.++++
T Consensus 300 ~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~ 333 (416)
T 3zvl_A 300 SSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKD 333 (416)
T ss_dssp HHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 2455578899999999999999999988888765
No 11
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.04 E-value=1e-09 Score=96.38 Aligned_cols=85 Identities=24% Similarity=0.384 Sum_probs=57.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
..|.+|+|+|+|||||||+++.|++.+++ .+++.|.+++ .+...+. ..+ . ..........+.....
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~-------~~i~~D~~~~--~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~ 68 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRL-------PLLSKDAFKE--VMFDGLG---WSD-R-EWSRRVGATAIMMLYH 68 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEHHHHHH--HHHHHHC---CCS-H-HHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC-------eEecHHHHHH--HHHHhcC---ccc-h-HHHHHhhHHHHHHHHH
Confidence 46889999999999999999999999965 6899888863 1222221 111 1 1111122223344455
Q ss_pred HHHHHHhCCCcEEEECcCC
Q 015774 290 LLVTALNEGRDVIMDGTLS 308 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~ 308 (400)
.+..+++.|.+||+|+++.
T Consensus 69 ~~~~~l~~g~~vi~d~~~~ 87 (193)
T 2rhm_A 69 TAATILQSGQSLIMESNFR 87 (193)
T ss_dssp HHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHhCCCeEEEecCCC
Confidence 6677888999999999983
No 12
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.03 E-value=1.4e-09 Score=107.27 Aligned_cols=149 Identities=15% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHHHHHhhccccchhhH------------HHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchh
Q 015774 82 LCKLAYEYLKKSKGCEDNI------------YEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESE 149 (400)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~i------------~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~ 149 (400)
|.+|...+-+..+...+.| .+++++..-.+.-..++++|||+ .||++|+|.+..
T Consensus 8 f~~l~~~l~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~Ll~adv~~~~~ 73 (328)
T 3e70_C 8 FGKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDVDKALDELEI--------------DLLEADVALEVV 73 (328)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTC--------CCEEECCHHHHHHHHHHHHH--------------HHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccccHHHHHhhccCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH
Confidence 5677777777666655543 44444433222233489999999 999999999988
Q ss_pred hhhhHHHHHHHHhhhhhhhh-hhhhhHHHHHHHH-HHHHHHHHHhhCcCccccccc-cccccCCCCEEEEEEcCCCCcHH
Q 015774 150 KKTKLKDFIMAATRKQRFEK-VTKDLKMKRVFST-LVEEMKAIRREGESHCTDVMV-PAALSERSPVLLLMGGGMGAGKS 226 (400)
Q Consensus 150 ~~~~~~~~~~~~~r~~rf~~-v~~~~~vkr~~~~-liee~~~i~~~~~~~~~~v~~-pl~~~~~~P~lILL~G~PGSGKS 226 (400)
..+++..+++-... +.........+.. +.+++..+.... ..+.. +......+|.++.|.|+||||||
T Consensus 74 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~----~~~~~~~~~~~~~~g~vi~lvG~nGaGKT 143 (328)
T 3e70_C 74 ------DALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETS----RRIDLIEEIRKAEKPYVIMFVGFNGSGKT 143 (328)
T ss_dssp ------HHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCS----SCCCHHHHHHSSCSSEEEEEECCTTSSHH
T ss_pred ------HHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCc----cccchhhhcccCCCCeEEEEECCCCCCHH
Confidence 66777777643322 2222222222222 233433344200 00100 01112467999999999999999
Q ss_pred HHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774 227 TVLKDIMKESFWSGAATNAVVVEADAFKET 256 (400)
Q Consensus 227 TlAk~LA~~lg~~~~~~~avvIdaDefRe~ 256 (400)
|+++.|+..+ ...++.+.+.+.|.++..
T Consensus 144 Tll~~Lag~l--~~~~g~V~l~g~D~~r~~ 171 (328)
T 3e70_C 144 TTIAKLANWL--KNHGFSVVIAASDTFRAG 171 (328)
T ss_dssp HHHHHHHHHH--HHTTCCEEEEEECCSSTT
T ss_pred HHHHHHHHHH--HhcCCEEEEEeecccccc
Confidence 9999999887 445667888899998854
No 13
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.98 E-value=3.5e-09 Score=103.30 Aligned_cols=131 Identities=15% Similarity=0.220 Sum_probs=71.5
Q ss_pred HHHHHHHHhhccccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHH
Q 015774 82 LCKLAYEYLKKSKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAA 161 (400)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 161 (400)
|.+|..++-++.+++...+. |++ . + .+.++|||+ .||.+|++.+.. ..+++.
T Consensus 4 ~~~l~~~l~~~~~~~~~~~~--~~~-~----~-~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~ 55 (304)
T 1rj9_A 4 FDRLKAGLAKTRERLLKAIP--WGG-N----L-EEVLEELEM--------------ALLAADVGLSAT------EEILQE 55 (304)
T ss_dssp --------------------------C----H-HHHHHHHHH--------------HHHHTTCCHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccc--cch-h----h-HHHHHHHHH--------------HHHHcCCCHHHH------HHHHHH
Confidence 45788888888888877776 454 3 7 899999999 999999999988 677777
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccc--cccccc-------cCCCCEEEEEEcCCCCcHHHHHHHH
Q 015774 162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDV--MVPAAL-------SERSPVLLLMGGGMGAGKSTVLKDI 232 (400)
Q Consensus 162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v--~~pl~~-------~~~~P~lILL~G~PGSGKSTlAk~L 232 (400)
.+++-. ..+...+. +++..+... .... ..|+.. +...|.++.|.|++||||||+++.|
T Consensus 56 ~~~~~~------~~~~~~~~---~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~L 122 (304)
T 1rj9_A 56 VRASGR------KDLKEAVK---EKLVGMLEP----DERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKL 122 (304)
T ss_dssp HHHTCC------SSTTHHHH---HHHTTTTCT----TCHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHH------HHHHHHHH---HHHHHHhCc----ccccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHH
Confidence 766322 22222222 222222210 0000 001211 1246889999999999999999999
Q ss_pred HHhccccCCCCCeEEEeCCcccc
Q 015774 233 MKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 233 A~~lg~~~~~~~avvIdaDefRe 255 (400)
+..+ +..++.+.+.+.|.++.
T Consensus 123 agll--~~~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 123 GRYY--QNLGKKVMFCAGDTFRA 143 (304)
T ss_dssp HHHH--HTTTCCEEEECCCCSST
T ss_pred HHHH--HhcCCEEEEEeecCCCh
Confidence 9987 44566788888898874
No 14
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.96 E-value=4.6e-09 Score=99.47 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=65.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC--CCCChhhHhHHHHHHHHHHHHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
|.+|+|.|+|||||||+++.|++++ .+..+|+.|.+| ..+... |....+....+ .........
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~------~~~~~i~~D~~r------~~~~~~~~g~~~~~~~~~~---~~~~~~~~~ 66 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN------PGFYNINRDDYR------QSIMAHEERDEYKYTKKKE---GIVTGMQFD 66 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS------TTEEEECHHHHH------HHHTTSCCCC---CCHHHH---HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC------CCcEEecccHHH------HHhccCCcccccccchhhh---hHHHHHHHH
Confidence 6799999999999999999999974 145899988776 334331 11001111111 111233445
Q ss_pred HHHHHH---hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 290 LLVTAL---NEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 290 lie~AL---~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
++..++ +.|.+||+|+++....+++.+..++++
T Consensus 67 ~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~ 102 (301)
T 1ltq_A 67 TAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKE 102 (301)
T ss_dssp HHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 677788 899999999999998888888776654
No 15
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.95 E-value=1.1e-09 Score=95.36 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=60.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcC--CC--CChhhHhHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSK--GH--HDDMLQTAELVHQSSTDA 286 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~--G~--~~d~~~aa~~v~~~~~~~ 286 (400)
.|.+|+|+|+|||||||+++.|++++++ +.+.++.|.+++.-+ ...... |. ...........+......
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~-----~~~~~~~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE-----PWLAFGVDSLIEAMP--LKMQSAEGGIEFDADGGVSIGPEFRALEGA 74 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS-----CEEEEEHHHHHHHSC--GGGGTSTTSEEECTTSCEEECHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC-----CeEEeccchHhhhcc--hhhccchhhccccCCCccccchhHHHHHHH
Confidence 3679999999999999999999999854 567778887752110 000000 00 000000000111222222
Q ss_pred HHHHHHHHHhCCCcEEEECcCC-ChHHHHHHHHHH
Q 015774 287 ASSLLVTALNEGRDVIMDGTLS-WVPFVEQTIAMA 320 (400)
Q Consensus 287 ae~lie~AL~eG~dVIIDgT~~-~~~~re~~i~~a 320 (400)
....+...++.|.+||+|+++. .+..++.+++.+
T Consensus 75 ~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~ 109 (178)
T 1qhx_A 75 WAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFV 109 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHh
Confidence 3334566778999999999886 444455565554
No 16
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.93 E-value=4.7e-09 Score=109.35 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=68.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCCh----hhHhHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDD----MLQTAELVHQSSTD 285 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d----~~~aa~~v~~~~~~ 285 (400)
..|.+|+|+|+|||||||+++.|++.++|. +.++.+|+.|+++ +.+.+.....+ ....+.........
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~--~~d~~v~s~D~~r------~~~~~~~~~~~~f~~~~~~~~~~re~~~~ 104 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI--GVPTKVFNVGEYR------REAVKQYSSYNFFRPDNEEAMKVRKQCAL 104 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHSCCCCGGGGCTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCCeEEecccHHH------HHhccCCccccccCcccHHHHHHHHHHHH
Confidence 568899999999999999999999999772 4467889988776 44433210001 01111111112211
Q ss_pred HHHHHHHHHH--hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 286 AASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 286 ~ae~lie~AL--~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
.+...+...+ +.|..||+|+|+.....++.+++++++
T Consensus 105 ~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~ 143 (520)
T 2axn_A 105 AALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKE 143 (520)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHH
Confidence 1122233344 679999999999999999998887764
No 17
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.92 E-value=1.8e-09 Score=110.66 Aligned_cols=177 Identities=16% Similarity=0.218 Sum_probs=99.0
Q ss_pred chhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhh-hhhhhhh
Q 015774 96 CEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRF-EKVTKDL 174 (400)
Q Consensus 96 ~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf-~~v~~~~ 174 (400)
+...+..+.++..=.+.-..++++|+++ .||.+|++.+.. ..+.+..++.-. +++....
T Consensus 6 l~~~~~~l~~~~~l~e~~~~~~l~el~~--------------~Ll~aDv~~~~~------~~~~~~v~~~~~~~~~~~~~ 65 (433)
T 3kl4_A 6 IRDAVRKFLTGSTPYEKAVDEFIKDLQK--------------SLISSDVNVKLV------FSLTAKIKERLNKEKPPSVL 65 (433)
T ss_dssp HHHHHHHHTTTCSCHHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHSCCCTTC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCChHHH------HHHHHHHHHHHhcccccccC
Confidence 3444555555555223334556789999 999999998877 444444444222 1222222
Q ss_pred H-HHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 175 K-MKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 175 ~-vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
. ...++..+.+++..++... . .+.......|.+|+++|+|||||||++..|+..+ ...+..+.++++|.+
T Consensus 66 ~~~~~v~~~v~~eL~~~L~~~----~---~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l--~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 66 ERKEWFISIVYDELSKLFGGD----K---EPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFY--KKRGYKVGLVAADVY 136 (433)
T ss_dssp CHHHHHHHHHHHHHHHHHCSS----S---CCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCS
T ss_pred ChHHHHHHHHHHHHHHhcCcc----c---cccccccCCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 1 2222333333443344200 0 0111123468999999999999999999999887 456778899999999
Q ss_pred ccchHHHHHHh---cC-CCC----ChhhHhHHHHHHHHHHHHHHHHHHHHhCCCcEEEECcCCChH
Q 015774 254 KETDVIYRALS---SK-GHH----DDMLQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVP 311 (400)
Q Consensus 254 Re~D~irk~L~---~~-G~~----~d~~~aa~~v~~~~~~~ae~lie~AL~eG~dVIIDgT~~~~~ 311 (400)
|... ++++. .. +.+ ....... ..+...+..+..+++++||-+|.+...
T Consensus 137 r~~a--~eqL~~~~~~~gv~~~~~~~~~dp~--------~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 137 RPAA--YDQLLQLGNQIGVQVYGEPNNQNPI--------EIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp CHHH--HHHHHHHHHTTTCCEECCTTCSCHH--------HHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred chhH--HHHHHHHHHhcCCceeeccccCCHH--------HHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 8532 23331 11 111 0000111 122233445556788888887877544
No 18
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.92 E-value=3.5e-08 Score=95.86 Aligned_cols=125 Identities=14% Similarity=0.255 Sum_probs=81.5
Q ss_pred hhHHHhhhcCCCcchhHH----HHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhh
Q 015774 98 DNIYEYFSKEAEPESLYV----KLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTK 172 (400)
Q Consensus 98 ~~i~~~~~~~~~~~~l~~----~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~ 172 (400)
..+..++++.+ |++ +.++||++ .||.+|++.+.. ..+++..+++-... +..
T Consensus 9 ~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------~L~~~dv~~~~~------~~~~~~~~~~~~~~~~~~ 64 (297)
T 1j8m_F 9 DTVRKFLTGSS----SYDKAVEDFIKELQK--------------SLISADVNVKLV------FSLTNKIKERLKNEKPPT 64 (297)
T ss_dssp HHHHHHHSCCS----CHHHHHHHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHhCCCC----CCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHHhhccccc
Confidence 34444555544 666 78899999 999999999988 66677666532221 211
Q ss_pred hhHH-HHHHHHHHHHHHHHHhhCcCcccccccc-ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 173 DLKM-KRVFSTLVEEMKAIRREGESHCTDVMVP-AALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 173 ~~~v-kr~~~~liee~~~i~~~~~~~~~~v~~p-l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
.... ..+...+.+++..+.. . . ..+ +....+ |.+|.+.|++|+||||++..|+..+ ...+..+.+++.
T Consensus 65 ~~~~~~~~~~~~~~~l~~~~~-~-~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~ 134 (297)
T 1j8m_F 65 YIERREWFIKIVYDELSNLFG-G-D-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGA 134 (297)
T ss_dssp TCCHHHHHHHHHHHHHHHHTT-C-S-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEEC
T ss_pred cCChHHHHHHHHHHHHHHHhc-c-c-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEec
Confidence 1111 2334444555443331 0 0 122 333334 8999999999999999999999887 345678899999
Q ss_pred Cccccc
Q 015774 251 DAFKET 256 (400)
Q Consensus 251 DefRe~ 256 (400)
|.++..
T Consensus 135 D~~r~~ 140 (297)
T 1j8m_F 135 DVYRPA 140 (297)
T ss_dssp CCSSSH
T ss_pred CCCCHH
Confidence 999853
No 19
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.91 E-value=2.2e-08 Score=102.27 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=75.7
Q ss_pred hHH----HHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhh-----hhHHHHHHHH
Q 015774 113 LYV----KLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTK-----DLKMKRVFST 182 (400)
Q Consensus 113 l~~----~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~-----~~~vkr~~~~ 182 (400)
|++ +.++|+++ .||.+|++.+.. ..+++..+++-... +.. +..++.+..+
T Consensus 22 ~~e~~~~~~l~e~~~--------------~Ll~adv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (433)
T 2xxa_A 22 LTEDNVKDTLREVRM--------------ALLEADVALPVV------REFINRVKEKAVGHEVNKSLTPGQEFVKIVRNE 81 (433)
T ss_dssp CCHHHHHHHHHHHHH--------------HHHHHTCCHHHH------HHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHHhcccccccCChHHHHHHHHHHH
Confidence 655 78899999 999999999888 66666666643322 211 2222333333
Q ss_pred HHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccccch
Q 015774 183 LVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFKETD 257 (400)
Q Consensus 183 liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefRe~D 257 (400)
+++ +.. . -..|+......|.+|+++|.+|+||||++..||..+ ... +..+.++++|.++...
T Consensus 82 l~~----~l~-~------~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l--~~~~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 82 LVA----AMG-E------ENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL--REKHKKKVLVVSADVYRPAA 144 (433)
T ss_dssp HHH----HHC-S------SSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH--HHTSCCCEEEEECCCSSTTH
T ss_pred HHH----Hhc-c------ccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHhcCCeEEEEecCCCCccH
Confidence 332 331 0 012333334678999999999999999999999888 344 7789999999998643
No 20
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.84 E-value=2.6e-08 Score=86.81 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=59.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
..+.+|+|.|+|||||||+++.|+..+|+ +++++|++.....+.+...+.. ..+. ... ......+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~-------~~i~~d~~~~~~~~~~~~~g~~-~~~~--~~~----~~~~~~~~ 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA-------AFLDGDFLHPRRNIEKMASGEP-LNDD--DRK----PWLQALND 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC-------EEEEGGGGCCHHHHHHHHTTCC-CCHH--HHH----HHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc-------EEEeCccccchHHHHHhhcCcC-CCcc--ccc----cHHHHHHH
Confidence 45789999999999999999999999855 8999999874322222222211 1111 001 11122344
Q ss_pred HHHHHHhCCCcEEEECcCCChHHHH
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPFVE 314 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~re 314 (400)
++..+++.|.++|+|.++..+.+++
T Consensus 72 ~~~~~~~~~~~~vi~~~~~~~~~~~ 96 (175)
T 1knq_A 72 AAFAMQRTNKVSLIVCSALKKHYRD 96 (175)
T ss_dssp HHHHHHHHCSEEEEECCCCSHHHHH
T ss_pred HHHHHHhcCCcEEEEeCchHHHHHH
Confidence 5666677899999999887655443
No 21
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.83 E-value=3e-08 Score=93.29 Aligned_cols=91 Identities=24% Similarity=0.360 Sum_probs=61.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh---ccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE---SFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~---lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a 287 (400)
.|.+|+|+|+|||||||+++.|++. .|+ .+++++.|.+++ .+.+ . .+. ..... ....
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~-----~~i~~~~D~~~~------~l~~--~-~~~--~e~~~----~~~~ 62 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNI-----DVIVLGSDLIRE------SFPV--W-KEK--YEEFI----KKST 62 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEECTHHHHT------TSSS--C-CGG--GHHHH----HHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCC-----EEEEECchHHHH------HHhh--h-hHH--HHHHH----HHHH
Confidence 4779999999999999999999998 443 445568887763 1211 1 111 11111 1122
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
...+..+++. ..||+|+++....++..+..++++
T Consensus 63 ~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~ 96 (260)
T 3a4m_A 63 YRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKK 96 (260)
T ss_dssp HHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHH
Confidence 3456667777 899999999988888777776654
No 22
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.81 E-value=1.9e-08 Score=90.06 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=58.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l 290 (400)
.|.+|+|+|+|||||||+++.|++.+|+ .+|++|.+...... ..+.......+... ... ...
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~-------~~i~~d~~~~~~~~-~~~~~g~~~~~~~~------~~~----~~~ 78 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGY-------PFIEGDALHPPENI-RKMSEGIPLTDDDR------WPW----LAA 78 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTC-------CEEEGGGGCCHHHH-HHHHHTCCCCHHHH------HHH----HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-------EEEeCCcCcchhhH-HHHhcCCCCCchhh------HHH----HHH
Confidence 4679999999999999999999999955 89999998742211 22211101111101 001 123
Q ss_pred HHHHHhCCCcEEEECcCCChHHHHHHHH
Q 015774 291 LVTALNEGRDVIMDGTLSWVPFVEQTIA 318 (400)
Q Consensus 291 ie~AL~eG~dVIIDgT~~~~~~re~~i~ 318 (400)
+...+..|.+||+|+++..+..++.+..
T Consensus 79 l~~~~~~~~~vivd~~~~~~~~~~~l~~ 106 (202)
T 3t61_A 79 IGERLASREPVVVSCSALKRSYRDKLRE 106 (202)
T ss_dssp HHHHHTSSSCCEEECCCCSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 3445588999999999988776665543
No 23
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.80 E-value=6.5e-08 Score=100.84 Aligned_cols=135 Identities=10% Similarity=0.117 Sum_probs=81.5
Q ss_pred cccchhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhh-hhh
Q 015774 93 SKGCEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFE-KVT 171 (400)
Q Consensus 93 ~~~~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~-~v~ 171 (400)
++++...+..++++..-.++...+.++|+++ .|+.+|++.+.. ..+.+..++.-.. .+.
T Consensus 7 ~~~l~~~~~~l~~~~~~~e~~~~~~l~el~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~~~ 66 (504)
T 2j37_W 7 GRKITSALRSLSNATIINEEVLNAMLKEVCT--------------ALLEADVNIKLV------KQLRENVKSAIDLEEMA 66 (504)
T ss_dssp -CTTTTTTTCCCSCSSCCHHHHHHHHHHHHH--------------HHCCTTTSSSTT------HHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHhhcCccc
Confidence 3445555555555554233344456889999 999999999988 5555555553332 221
Q ss_pred hhhHH-HHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 172 KDLKM-KRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 172 ~~~~v-kr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
+.... ..+...+.+++..+.. ....++......|.+|+++|+|||||||++..|+..+ ...+..+.++++
T Consensus 67 ~~~~~~~~~~~~v~~eL~~ll~-------~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l--~~~G~kVllVd~ 137 (504)
T 2j37_W 67 SGLNKRKMIQHAVFKELVKLVD-------PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYY--QRKGWKTCLICA 137 (504)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHC-------CCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEE
T ss_pred ccCChHHHHHHHHHHHHHHHhc-------cccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEec
Confidence 11111 1222233334444442 1111333224578899999999999999999999887 334568899999
Q ss_pred Cccccc
Q 015774 251 DAFKET 256 (400)
Q Consensus 251 DefRe~ 256 (400)
|.++..
T Consensus 138 D~~r~a 143 (504)
T 2j37_W 138 DTFRAG 143 (504)
T ss_dssp CCSSSH
T ss_pred cccchh
Confidence 999864
No 24
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.79 E-value=3.1e-08 Score=88.99 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=61.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
.+.+.+|+|.|+|||||||+++.|+..+|+ +++++|++...........+. ...+.. . .......+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~-------~~i~~d~~~~~~~~~~~~~g~-~~~~~~-----~-~~~~~~~~ 91 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGL-------EFAEADAFHSPENIATMQRGI-PLTDED-----R-WPWLRSLA 91 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCC-------EEEEGGGGSCHHHHHHHHTTC-CCCHHH-----H-HHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------eEEcccccccHHHHHHHhcCC-CCCCcc-----c-ccHHHHHH
Confidence 356789999999999999999999999855 899999987433222222221 111111 0 11123344
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHH
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQT 316 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~ 316 (400)
.++...+..|.++|+|.++..+..++.+
T Consensus 92 ~~~~~~~~~g~~viid~~~~~~~~~~~l 119 (200)
T 4eun_A 92 EWMDARADAGVSTIITCSALKRTYRDVL 119 (200)
T ss_dssp HHHHHHHHTTCCEEEEECCCCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEchhhhHHHHHHH
Confidence 5566677899999999998876655443
No 25
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.79 E-value=2.7e-08 Score=87.91 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=62.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
...+.+|+|.|+|||||||+++.|+..++. .+..+.++++|.++. .+.+. .. +.. .+. ......+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~--~~~~~~~~~~d~~~~------~~~~~-~~--~~~-~~r--~~~~~~~~ 75 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK--EGYRVEVLDGDWART------TVSEG-AG--FTR-EER--LRHLKRIA 75 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHHT------TTTTT-CC--CCH-HHH--HHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEeeHHHHHH------HHhhc-cC--CCh-hhH--HHHHHHHH
Confidence 356889999999999999999999999842 344567888887652 22221 00 101 110 11111122
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
.++...++.|..||+|++......++.+..++.
T Consensus 76 ~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~ 108 (186)
T 2yvu_A 76 WIARLLARNGVIVICSFVSPYKQARNMVRRIVE 108 (186)
T ss_dssp HHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEeCccccHHHHHHHHHHhh
Confidence 233445688999999998877666666665554
No 26
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.77 E-value=1.8e-07 Score=95.54 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhhhhHHHH-HHHHHHHHHHHHHh
Q 015774 115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTKDLKMKR-VFSTLVEEMKAIRR 192 (400)
Q Consensus 115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~~~~vkr-~~~~liee~~~i~~ 192 (400)
.+.++|+++ .||.+|.+.+.. ..+++..+++-... +.+...... +...+.+++.....
T Consensus 28 ~~~l~e~~~--------------~Ll~adv~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 87 (425)
T 2ffh_A 28 KATLREIRR--------------ALMDADVNLEVT------RDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG 87 (425)
T ss_dssp HHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhC
Confidence 578899999 999999998887 55666665533322 222222222 22222333322221
Q ss_pred hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774 193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (400)
Q Consensus 193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~ 256 (400)
. ...++... .|.+|.++|++||||||++..|+..+ ...+..+.+++.|.++..
T Consensus 88 -~------~~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l--~~~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 88 -G------EARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRPA 140 (425)
T ss_dssp -S------SCCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEECCSSCHH
T ss_pred -C------CcccccCC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEeeccccCch
Confidence 0 01233332 78899999999999999999999988 456778999999999853
No 27
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.72 E-value=6.8e-08 Score=84.31 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccch---------HHHHHHhcCCCCChhhHhHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAELVHQ 281 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D---------~irk~L~~~G~~~d~~~aa~~v~~ 281 (400)
.|.+|+|.|+|||||||+++.|++.+++ .+|+.|++-... ...+.+...|.... ....+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~-------~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~ 70 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY-------THLSAGELLRDERKNPDSQYGELIEKYIKEGKIVP----VEITIS 70 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCC----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC-------eEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCC----HHHHHH
Confidence 4789999999999999999999999865 789988763110 00011111111110 011112
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774 282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (400)
Q Consensus 282 ~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ 319 (400)
.....+...+ .++..|..||+|++.........+...
T Consensus 71 ~l~~~~~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~ 107 (196)
T 1tev_A 71 LLKREMDQTM-AANAQKNKFLIDGFPRNQDNLQGWNKT 107 (196)
T ss_dssp HHHHHHHHHH-HHCTTCCEEEEESCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhh-ccccCCCeEEEeCCCCCHHHHHHHHHH
Confidence 2222222222 234468899999998887655555443
No 28
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.69 E-value=3.2e-08 Score=86.28 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=53.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
.|.+|+|+|+|||||||+++.|++.+++ .++ +.|.+. +.+.+ +...|. .++....... + ....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~-------~~i~d~~~~g--~~i~~-~~~~g~-~~~~~~~~~~-~----~~~~ 67 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPG-------SFVFEPEEMG--QALRK-LTPGFS-GDPQEHPMWI-P----LMLD 67 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTT-------CEECCTHHHH--HHHHH-TSTTCC-SCGGGSTTHH-H----HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC-------CEEEchhhhH--HHHHH-hCcccc-chhhhhHHHH-H----HHHH
Confidence 5779999999999999999999999865 344 533221 11222 222221 1121111100 1 1122
Q ss_pred HHHHHHhC-CCcEEEECcCCChHHHHHHHHHHHh
Q 015774 290 LLVTALNE-GRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 290 lie~AL~e-G~dVIIDgT~~~~~~re~~i~~ark 322 (400)
++..+++. |..||+|+++....+++.++..+++
T Consensus 68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~ 101 (183)
T 2vli_A 68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLKD 101 (183)
T ss_dssp HHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHh
Confidence 34445555 8899999999988777777666653
No 29
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.64 E-value=1.3e-07 Score=83.18 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=55.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccch-----HHH---HHHhcCCCCChhhHhHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD-----VIY---RALSSKGHHDDMLQTAELVHQ 281 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D-----~ir---k~L~~~G~~~d~~~aa~~v~~ 281 (400)
..|.+|+|.|+|||||||+++.|++.+++ .+++.|++-... +.- +.+...|... + ....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~-------~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~-~---~~~~-- 73 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGY-------THLSTGDLLRSEVSSGSARGKKLSEIMEKGQLV-P---LETV-- 73 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCC-------EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCC-C---HHHH--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCC-------eEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcC-C---HHHH--
Confidence 35679999999999999999999999965 799987754210 000 0111111110 0 0111
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEECcCCChHHHH
Q 015774 282 SSTDAASSLLVTALNEGRDVIMDGTLSWVPFVE 314 (400)
Q Consensus 282 ~~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re 314 (400)
.......+..++..|..||+|+........+
T Consensus 74 --~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~ 104 (196)
T 2c95_A 74 --LDMLRDAMVAKVNTSKGFLIDGYPREVQQGE 104 (196)
T ss_dssp --HHHHHHHHHHHTTTCSCEEEESCCCSHHHHH
T ss_pred --HHHHHHHHHhccccCCcEEEeCCCCCHHHHH
Confidence 2233445566777899999999766554443
No 30
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.62 E-value=1.2e-07 Score=80.46 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=54.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCC-CChhhHhHHHHHHH-HHHHHHHH
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGH-HDDMLQTAELVHQS-STDAASSL 290 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~-~~d~~~aa~~v~~~-~~~~ae~l 290 (400)
.+|+|+|+|||||||+++.| +.+|+ .+++.|++- ++.+...+. ..+........... .......+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~-------~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA-------KVIVMSDVV-----RKRYSIEAKPGERLMDFAKRLREIYGDGVVARL 68 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC-------EEEEHHHHH-----HHHHHHHC---CCHHHHHHHHHHHHCTTHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC-------cEEEHhHHH-----HHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHH
Confidence 48999999999999999999 88865 678755432 222222110 01111111111111 12223345
Q ss_pred HHHHH--hCCCcEEEECcCCChHHHHHHHHHH
Q 015774 291 LVTAL--NEGRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 291 ie~AL--~eG~dVIIDgT~~~~~~re~~i~~a 320 (400)
+...+ ..+..||+||. ..+..++.+....
T Consensus 69 ~~~~l~~~~~~~vi~dg~-~~~~~~~~l~~~~ 99 (179)
T 3lw7_A 69 CVEELGTSNHDLVVFDGV-RSLAEVEEFKRLL 99 (179)
T ss_dssp HHHHHCSCCCSCEEEECC-CCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEeCC-CCHHHHHHHHHHh
Confidence 56667 78889999998 6666665554443
No 31
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.60 E-value=1.5e-07 Score=82.88 Aligned_cols=91 Identities=18% Similarity=0.286 Sum_probs=56.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH-----H---HHHhcCCCCChhhHhHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI-----Y---RALSSKGHHDDMLQTAELVHQS 282 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i-----r---k~L~~~G~~~d~~~aa~~v~~~ 282 (400)
.|.+|+|.|+|||||||+++.|++.+++ .+++.|++....+. . ..+...|.... ...++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~-------~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~----~~~~~-- 77 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF-------THLSTGELLREELASESERSKLIRDIMERGDLVP----SGIVL-- 77 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC-------EEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC----HHHHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC-------eEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC----HHHHH--
Confidence 4679999999999999999999999955 89998876421110 0 11111121100 11122
Q ss_pred HHHHHHHHHHHHHhCCCcEEEECcCCChHHHHHH
Q 015774 283 STDAASSLLVTALNEGRDVIMDGTLSWVPFVEQT 316 (400)
Q Consensus 283 ~~~~ae~lie~AL~eG~dVIIDgT~~~~~~re~~ 316 (400)
..+...+...+..|..||+|+.......+..+
T Consensus 78 --~~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l 109 (199)
T 2bwj_A 78 --ELLKEAMVASLGDTRGFLIDGYPREVKQGEEF 109 (199)
T ss_dssp --HHHHHHHHHHTTSCSCEEEETCCSSHHHHHHH
T ss_pred --HHHHHHHhcccccCccEEEeCCCCCHHHHHHH
Confidence 22333445556689999999988776554444
No 32
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.58 E-value=6.8e-08 Score=98.69 Aligned_cols=131 Identities=15% Similarity=0.235 Sum_probs=80.0
Q ss_pred chhhHHHhhhcCCCcchhHHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhh-hhhhh
Q 015774 96 CEDNIYEYFSKEAEPESLYVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEK-VTKDL 174 (400)
Q Consensus 96 ~~~~i~~~~~~~~~~~~l~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~-v~~~~ 174 (400)
+...+..++++.+-.+.-..+.++|++. .|+.++++.... ..+...+++..+.. +..+.
T Consensus 8 ~~~~~~~~~~~~~~~e~~~~~~~~e~~~--------------~Ll~adv~~~~~------~~~~~~vk~~~~~~~~~~~~ 67 (432)
T 2v3c_C 8 LNKALNKLKAAAFVDKKLIKEVIKDIQR--------------ALIQADVNVKLV------LKMSKEIERRALEEKTPKGL 67 (432)
T ss_dssp HHHHHHHCCSSSCCCSSTTHHHHHHHHH--------------HHHHTCCCHHHH------HHHTHHHHHHHSSSCSSCSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH--------------HHHHcCCCHHHH------HHHHHHHHHHhccccccccC
Confidence 4445555655544222233478999999 999999998876 44455555544432 22222
Q ss_pred HHHH-HHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 175 KMKR-VFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 175 ~vkr-~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.... +...+.+++..++. +. ..++......|.+|+++|+||+||||++..|+..+ ...+..+.++++|.+
T Consensus 68 ~~~~~~~~~~~~~l~~ll~-----~~--~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l--~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 68 SKKEHIIKIVYEELVKLLG-----EE--AKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI--QKRGLKPALIAADTY 138 (432)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CS--CCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHH--HHHHCCEEEECCSCC
T ss_pred ChHHHHHHHHHHHHHHHhC-----CC--CcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEecccc
Confidence 2222 22222233333442 11 11232223467899999999999999999999987 334568899999998
Q ss_pred cc
Q 015774 254 KE 255 (400)
Q Consensus 254 Re 255 (400)
+.
T Consensus 139 r~ 140 (432)
T 2v3c_C 139 RP 140 (432)
T ss_dssp CT
T ss_pred Cc
Confidence 74
No 33
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.57 E-value=2.4e-07 Score=94.57 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=65.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCC----ChhhHhHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHH----DDMLQTAELVHQSST 284 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~----~d~~~aa~~v~~~~~ 284 (400)
...|.+|+|+|.|||||||+++.|++.++|. ..+...++.|+++ ..+.+.... +.....+........
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~--~~~t~~~~~d~~r------~~~~g~~~~~~ifd~~g~~~~r~re~~~ 107 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI--GVPTREFNVGQYR------RDMVKTYKSFEFFLPDNEEGLKIRKQCA 107 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEHHHHH------HHHHCSCCCGGGGCTTCHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc--CCCceEEecchhh------hhhccCCCcccccCCCCHHHHHHHHHHH
Confidence 3568899999999999999999999998762 3456677766655 333321000 001111111111111
Q ss_pred HHHHHHHHHHH--hCCCcEEEECcCCChHHHHHHHHHHHh
Q 015774 285 DAASSLLVTAL--NEGRDVIMDGTLSWVPFVEQTIAMARN 322 (400)
Q Consensus 285 ~~ae~lie~AL--~eG~dVIIDgT~~~~~~re~~i~~ark 322 (400)
..+-..+...+ ..|..||+|+|+.....++.+++.+++
T Consensus 108 ~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 108 LAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 11111224445 578899999999999999988887764
No 34
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.56 E-value=2.9e-07 Score=80.12 Aligned_cols=38 Identities=29% Similarity=0.534 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|.+|+|+|+|||||||+++.|++.+|+ .+++.|++-
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~-------~~i~~d~~~ 41 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGW-------VHLSAGDLL 41 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCC-------eEeeHHHHH
Confidence 35789999999999999999999999865 899987653
No 35
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.56 E-value=5.2e-07 Score=80.32 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=55.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccch---------HHHHHHhcCCCCChhhHhHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETD---------VIYRALSSKGHHDDMLQTAELV 279 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D---------~irk~L~~~G~~~d~~~aa~~v 279 (400)
...|.+|+|.|+|||||||+++.|++.+|+ .+|+.|++-... ...+.+...|... + ....
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-------~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~-~---~~~~ 80 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSF-------VHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV-P---QEIT 80 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSC-------EEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCC-C---HHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCc-------eEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcC-C---HHHH
Confidence 456889999999999999999999999855 899988643100 0001111111110 0 0112
Q ss_pred HHHHHHHHHHHHHHHHhCC-CcEEEECcCCChHHH
Q 015774 280 HQSSTDAASSLLVTALNEG-RDVIMDGTLSWVPFV 313 (400)
Q Consensus 280 ~~~~~~~ae~lie~AL~eG-~dVIIDgT~~~~~~r 313 (400)
...+...+..++..| ..+|+||.....+..
T Consensus 81 ----~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~ 111 (203)
T 1ukz_A 81 ----LALLRNAISDNVKANKHKFLIDGFPRKMDQA 111 (203)
T ss_dssp ----HHHHHHHHHHHHHTTCCEEEEETCCCSHHHH
T ss_pred ----HHHHHHHHHhhhccCCCeEEEeCCCCCHHHH
Confidence 223344556677788 589999986655433
No 36
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.48 E-value=3.7e-07 Score=82.53 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
...+.+|+|.|+|||||||+++.|+..++. ..|..++++++|.++. .+... .. +.. ... ......+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-~~g~~~~~~~~d~~r~------~l~~~-~~--~~~-~~r--~~~~~~~~ 88 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDGDNIRF------GLNKD-LG--FSE-ADR--NENIRRIA 88 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCCCEEEECHHHHTT------TTTTT-CC--SSH-HHH--HHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc-ccCCcEEEECChHHhh------hhccc-cC--CCH-HHH--HHHHHHHH
Confidence 356789999999999999999999998841 1122478999887762 22211 00 100 110 11112223
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~a 320 (400)
.++..+++.|..||+|.+......++.+..++
T Consensus 89 ~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~ 120 (211)
T 1m7g_A 89 EVAKLFADSNSIAITSFISPYRKDRDTARQLH 120 (211)
T ss_dssp HHHHHHHHTTCEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEecCCccHHHHHHHHHHh
Confidence 35666788999999995543334444444444
No 37
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.46 E-value=4e-07 Score=79.60 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+.+|+|.|+|||||||+++.|++.+|+ .+++.|++
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~-------~~i~~d~~ 38 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGF-------KKLSTGDI 38 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTC-------EEECHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-------eEecHHHH
Confidence 4678999999999999999999999865 89998754
No 38
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.46 E-value=4.1e-07 Score=81.58 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=62.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAAS 288 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae 288 (400)
..++.+|+|.|+|||||||+++.|+..++. .+.-++++++|.++. .+... ..-..... ........
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~--~G~~~~~~d~d~~~~------~~~~~-~~~~~~~~-----~~~~~~~~ 87 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ--KGKLCYILDGDNVRH------GLNRD-LSFKAEDR-----AENIRRVG 87 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTT------TTTTT-CCSSHHHH-----HHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEecCchhhh------Hhhcc-cCcChHHH-----HHHHHHHH
Confidence 467899999999999999999999999842 111234899888763 12211 11001110 11112233
Q ss_pred HHHHHHHhCCCcEEEECcCCChHHHHHHHHHH
Q 015774 289 SLLVTALNEGRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDgT~~~~~~re~~i~~a 320 (400)
.++......|..||.......+..++.+.+.+
T Consensus 88 ~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~ 119 (200)
T 3uie_A 88 EVAKLFADAGIICIASLISPYRTDRDACRSLL 119 (200)
T ss_dssp HHHHHHHHTTCEEEEECCCCCHHHHHHHHHTS
T ss_pred HHHHHHHhCCceEEEecCCchHHHHHHHHHhc
Confidence 35555667899999998888877777665543
No 39
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.45 E-value=5.5e-07 Score=78.87 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+..|+|+|+|||||||+++.|++.+|+ .++|.|++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~-------~~i~~d~~~ 40 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR-------ILYDSDKEI 40 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC-------CEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence 558899999999999999999999966 799988775
No 40
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.44 E-value=1.5e-06 Score=78.71 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.|..|+|.|+|||||||+++.|++.+++ .++++|++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~~ 38 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA-------AHLATGDM 38 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc-------eEEehhHH
Confidence 35678999999999999999999999965 78998665
No 41
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.42 E-value=9.5e-07 Score=76.86 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChh---hHhHHHHHHHHHHHHHH
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDM---LQTAELVHQSSTDAASS 289 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~---~~aa~~v~~~~~~~ae~ 289 (400)
.+|+|.|+|||||||+++.|++.++ ..+..+.+++.|++- .+.+...+..... .......+......+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD--NQGINNKIINYGDFM-----LATALKLGYAKDRDEMRKLSVEKQKKLQIDAAK 74 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH--TTTCCEEEEEHHHHH-----HHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEEECChHH-----HHHHHhcccccchhhhhcCCHHHHHHHHHHHHH
Confidence 4799999999999999999999984 223346888755432 2222111111100 00000100111122223
Q ss_pred HHHHHH--hCCCcEEEECc
Q 015774 290 LLVTAL--NEGRDVIMDGT 306 (400)
Q Consensus 290 lie~AL--~eG~dVIIDgT 306 (400)
.+..++ ..|..||+|+.
T Consensus 75 ~i~~~l~~~~~~~vi~d~~ 93 (194)
T 1nks_A 75 GIAEEARAGGEGYLFIDTH 93 (194)
T ss_dssp HHHHHHHHTCSSEEEEEEC
T ss_pred HHHHHhhccCCCEEEECCc
Confidence 355666 78999999985
No 42
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=9e-07 Score=79.28 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.++.+|+|.|+|||||||+++.|++.+|+ .+++.|++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~-------~~i~~d~~~ 60 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV-------PFIDLDWYI 60 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC-------CEEcchHHH
Confidence 45678999999999999999999999965 689988764
No 43
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.41 E-value=5.3e-07 Score=87.39 Aligned_cols=110 Identities=10% Similarity=0.125 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhh-hhhhHHHHHHHHHHHHHHHHHh
Q 015774 114 YVKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKV-TKDLKMKRVFSTLVEEMKAIRR 192 (400)
Q Consensus 114 ~~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v-~~~~~vkr~~~~liee~~~i~~ 192 (400)
+.+.++||++ .|+.++++.+.. ..+++..++.++... .....+...+...+.+ +..
T Consensus 38 ~~~~~~~l~~--------------~L~~~dv~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~l~ 94 (296)
T 2px0_A 38 LPEPLRKAEK--------------LLQETGIKESTK------TNTLKKLLRFSVEAGGLTEENVVGKLQEILCD---MLP 94 (296)
T ss_dssp -CCHHHHHHH--------------HHHHSCCCHHHH------HHHHHHHHHHHHSSSCCCTTTHHHHHHHHHHT---TSC
T ss_pred cHHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHhhcccCCCHHHHHHHHHHHHHH---HhC
Confidence 3467899999 999999999888 666666654433322 1122333333333332 321
Q ss_pred hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc
Q 015774 193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET 256 (400)
Q Consensus 193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~ 256 (400)
. ..++.. ...|.++++.|++||||||++..|+..+. +..|..+.+++.|.++..
T Consensus 95 -----~---~~~~~~-~~~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G~~V~lv~~D~~r~~ 148 (296)
T 2px0_A 95 -----S---ADKWQE-PIHSKYIVLFGSTGAGKTTTLAKLAAISM-LEKHKKIAFITTDTYRIA 148 (296)
T ss_dssp -----C---GGGSCC-CCCSSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCCEEEEECCCSSTT
T ss_pred -----C---cccccc-cCCCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCEEEEEecCcccch
Confidence 0 001111 24678999999999999999999998872 134668899999998853
No 44
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.40 E-value=5e-07 Score=80.63 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=33.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
...|.+|+|.|+|||||||+++.|++.+++ .+++.|++
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~-------~~i~~d~~ 54 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI-------PQISTGEL 54 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------cEEehhHH
Confidence 467889999999999999999999999965 68887654
No 45
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.38 E-value=6.5e-07 Score=80.46 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=52.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHH---HHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQS---STDAASSL 290 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~---~~~~ae~l 290 (400)
.|+|.|+|||||||+++.|++.+|+ .+++.|++- ++.+... .+ ............ .......+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~-------~~i~~d~~~-----r~~~~~~-~~-~~~~~~~~~~~g~~~~~~~~~~~ 67 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI-------PHISTGDMF-----RAAIKNG-TE-LGLKAKSFMDQGNLVPDEVTIGI 67 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-------CEEEHHHHH-----HHHHHTT-CH-HHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEeeHHHHH-----HHHHhcC-CH-HHHHHHHHHHCCCCCCHHHHHHH
Confidence 5789999999999999999999965 788876543 1222211 00 000000000000 01122234
Q ss_pred HHHHHhC---CCcEEEECcCCChHHHHHHHHHH
Q 015774 291 LVTALNE---GRDVIMDGTLSWVPFVEQTIAMA 320 (400)
Q Consensus 291 ie~AL~e---G~dVIIDgT~~~~~~re~~i~~a 320 (400)
+...+.. |..+|+|+..........+...+
T Consensus 68 ~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~ 100 (216)
T 3fb4_A 68 VHERLSKDDCQKGFLLDGFPRTVAQADALDSLL 100 (216)
T ss_dssp HHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHH
T ss_pred HHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHH
Confidence 4445543 88999999877766555554443
No 46
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.37 E-value=1.6e-06 Score=79.37 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+|+|.|+|||||||+++.|++.+++ .++++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~-------~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL-------AHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC-------EEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------eEEchHHH
Confidence 6899999999999999999999855 78988665
No 47
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.37 E-value=8.3e-07 Score=82.76 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=33.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
...|.+|+|.|+|||||||+++.|++.+|+ .++++|++
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~-------~~is~~~~ 63 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCY-------CHLSTGDL 63 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCC-------EEEEHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCC-------eEEecHHH
Confidence 357899999999999999999999999855 89987654
No 48
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.36 E-value=1.2e-06 Score=76.92 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+++.+|+|.|+|||||||+++.|+..++ .+.+++++|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcccchh
Confidence 4678999999999999999999998863 367899988875
No 49
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.34 E-value=6.9e-07 Score=80.44 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=52.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHH---HHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQS---STDAASSL 290 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~---~~~~ae~l 290 (400)
.|+|.|+|||||||+++.|++.+|+ .+++.|++- ++.+... . ............. .......+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~-------~~i~~d~~~-----r~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~ 67 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI-------PHISTGDMF-----RAAMKEE-T-PLGLEAKSYIDKGELVPDEVTIGI 67 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC-------CEEEHHHHH-----HHHHHTT-C-HHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------cEEeHHHHH-----HHHHhcC-C-HHHHHHHHHHHCCCCCCHHHHHHH
Confidence 4789999999999999999999865 789876543 1222111 0 0000000000000 00111223
Q ss_pred HHHHHh---CCCcEEEECcCCChHHHHHHHHHHH
Q 015774 291 LVTALN---EGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 291 ie~AL~---eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
+...+. .|..+|+|+..........+...+.
T Consensus 68 ~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~ 101 (216)
T 3dl0_A 68 VKERLGKDDCERGFLLDGFPRTVAQAEALEEILE 101 (216)
T ss_dssp HHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHH
Confidence 344444 3889999997777666655555443
No 50
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.33 E-value=1.2e-06 Score=76.37 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.+|+|.|+|||||||+++.|++.++ ..+.+..+++.|++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~--~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR--KEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH--TTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCcceEEEehHHH
Confidence 56899999999999999999999985 11112578886643
No 51
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.33 E-value=3.2e-06 Score=74.51 Aligned_cols=91 Identities=21% Similarity=0.233 Sum_probs=54.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHH
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV 292 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie 292 (400)
.+++|.|+|||||||+++.|+..+ .+.+++++|+++.. . ..+...+... ........+.....+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~------~-~~~~~~~~~~--~~~~~~~~~~l~~~~~ 67 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM------V-VGGYRPPWES--DELLALTWKNITDLTV 67 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT------C-CTTCCCGGGC--HHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh------h-ccccccCccc--hhHHHHHHHHHHHHHH
Confidence 588999999999999999999865 24588998877531 1 1111111110 0000112222333444
Q ss_pred HHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774 293 TALNEGRDVIMDGTLSWVPFVEQTIAM 319 (400)
Q Consensus 293 ~AL~eG~dVIIDgT~~~~~~re~~i~~ 319 (400)
..+..|.++|+|++. .+...+.+...
T Consensus 68 ~~~~~~~~~ild~~~-~~~~~~~~~~~ 93 (189)
T 2bdt_A 68 NFLLAQNDVVLDYIA-FPDEAEALAQT 93 (189)
T ss_dssp HHHHTTCEEEEESCC-CHHHHHHHHHH
T ss_pred HHHhcCCcEEEeecc-CHHHHHHHHHH
Confidence 556788999999964 45544444444
No 52
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.32 E-value=6.9e-07 Score=79.53 Aligned_cols=30 Identities=20% Similarity=0.129 Sum_probs=26.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
...|.+|+|+|+|||||||+++.|++.+++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999865
No 53
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.32 E-value=1.8e-06 Score=78.43 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=31.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+..|+|.|+|||||||+++.|++.+++ .+++.|++-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~li 40 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL-------AHLSTGDML 40 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc-------eEEehhHHH
Confidence 457899999999999999999999965 899987643
No 54
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.31 E-value=4.3e-06 Score=80.83 Aligned_cols=110 Identities=19% Similarity=0.270 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhhhhccccccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhhh-hH-HHHHHHHHHHHHHHHHh
Q 015774 115 VKLVEEFDRCILSYFTFHWSHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKD-LK-MKRVFSTLVEEMKAIRR 192 (400)
Q Consensus 115 ~~~~~e~e~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~~-~~-vkr~~~~liee~~~i~~ 192 (400)
.++++||+. .||.++.+.+.. ..+++..+...-.+++.. .. ...++.-.++++.....
T Consensus 28 ~~~l~~l~~--------------~Ll~ad~~~~~~------~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 87 (295)
T 1ls1_A 28 KATLREIRR--------------ALMDADVNLEVA------RDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG 87 (295)
T ss_dssp HHHHHHHHH--------------HHHHTTCCHHHH------HHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--------------HHHHCCCCHHHH------HHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHC
Confidence 577888887 999999998877 566666665444444421 11 12333334444332211
Q ss_pred hCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 193 EGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 193 ~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
. . ..++... .|.++.+.|++|+||||++..|+..+ ...+..+.+++.|..+.
T Consensus 88 -~----~--~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~--~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 88 -G----E--ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRP 139 (295)
T ss_dssp -S----S--CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEECCSSCH
T ss_pred -C----C--CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEecCCcccH
Confidence 0 0 0233322 78899999999999999999999887 44567889999998874
No 55
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.31 E-value=4e-06 Score=77.25 Aligned_cols=93 Identities=25% Similarity=0.276 Sum_probs=58.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC-CccccchHHHHHHhcCCCCChhhHhHHHHHH-H--HHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA-DAFKETDVIYRALSSKGHHDDMLQTAELVHQ-S--STDAASS 289 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda-DefRe~D~irk~L~~~G~~~d~~~aa~~v~~-~--~~~~ae~ 289 (400)
+|+|.|+|||||||.|+.|++.+|+ .+|++ |-|| +.+.... .-.......... . ....+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~-------~~istGdllR------~~i~~~t--~lg~~~~~~~~~G~lvpd~iv~~ 66 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF-------VHISTGDILR------EAVQKGT--PLGKKAKEYMERGELVPDDLIIA 66 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC-------EEEEHHHHHH------HHHHHTC--HHHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-------eEEcHHHHHH------HHHHhcC--hhhhhHHHHHhcCCcCCHHHHHH
Confidence 6889999999999999999999966 89985 3344 3333210 000000000000 0 0233445
Q ss_pred HHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
++...+.+...+|+||--.+....+.+..+..
T Consensus 67 lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~ 98 (206)
T 3sr0_A 67 LIEEVFPKHGNVIFDGFPRTVKQAEALDEMLE 98 (206)
T ss_dssp HHHHHCCSSSCEEEESCCCSHHHHHHHHHHHH
T ss_pred HHHHhhccCCceEecCCchhHHHHHHHHhhHH
Confidence 67778888888999999888777666655443
No 56
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.30 E-value=3e-06 Score=74.96 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=49.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCC---CCChhhHhHHHHHH-HHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKG---HHDDMLQTAELVHQ-SSTDA 286 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G---~~~d~~~aa~~v~~-~~~~~ 286 (400)
+|.+|+|.|+|||||||+++.|++.++.. + +++..+.. + .+.+++.+...+ ..+.. .....+. .-...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~--g-~~~~~~~~-~--~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~ 74 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK--R-DVYLTEWN-S--SDWIHDIIKEAKKKDLLTPL--TFSLIHATDFSDR 74 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT--S-CEEEEETT-C--CCHHHHHHHHHTTTSCCCHH--HHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc--C-CEEEecCC-c--HHHHHHHHhccccccCCCHH--HHHHHHHHHHHHH
Confidence 46899999999999999999999998642 2 33332211 1 112223332211 11111 1111111 11122
Q ss_pred HHHHHHHHHhCCCcEEEECcCC
Q 015774 287 ASSLLVTALNEGRDVIMDGTLS 308 (400)
Q Consensus 287 ae~lie~AL~eG~dVIIDgT~~ 308 (400)
....+..+++.|..||+|+.+.
T Consensus 75 ~~~~i~~~l~~g~~vi~D~~~~ 96 (213)
T 2plr_A 75 YERYILPMLKSGFIVISDRYIY 96 (213)
T ss_dssp HHHTHHHHHHTTCEEEEESCHH
T ss_pred HHHHHHHHHhCCCEEEEeCcHh
Confidence 2334566788999999998543
No 57
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.30 E-value=4.7e-06 Score=77.77 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
.+.|.+|+|.|+|||||||.|+.|++.+|+ .+|++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~-------~hIstG 61 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHF-------NHLSSG 61 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCC-------EEECHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCC-------ceEcHH
Confidence 367889999999999999999999999966 899863
No 58
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.29 E-value=2.5e-06 Score=77.83 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|.+|+|.|+|||||||+++.|++.+++ .+++.|++-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~~~ 42 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL-------KHLSSGDLL 42 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSS-------EEEEHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCC-------eEEechHHH
Confidence 35679999999999999999999999965 889987643
No 59
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.29 E-value=2.2e-06 Score=75.45 Aligned_cols=92 Identities=22% Similarity=0.276 Sum_probs=61.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
+++.++.|.|+|||||||+++.+.. +..+++.|.++ ..+... +... .....++. ....
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d~~~------g~~~~~--~~~~-~~~~~~~~----~~~~ 64 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSDFCR------GLMSDD--ENDQ-TVTGAAFD----VLHY 64 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHHHHH------HHHCSS--TTCG-GGHHHHHH----HHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccHHHH------HHhcCc--ccch-hhHHHHHH----HHHH
Confidence 4788999999999999999999653 22467766544 444332 1111 11111222 2223
Q ss_pred HHHHHHhCCCcEEEECcCCChHHHHHHHHHHHhh
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAMARNV 323 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~arkv 323 (400)
.....+..|..+++|.++.....+.+.+.+++..
T Consensus 65 ~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral 98 (171)
T 4gp7_A 65 IVSKRLQLGKLTVVDATNVQESARKPLIEMAKDY 98 (171)
T ss_dssp HHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHc
Confidence 4555778999999999999988888998888764
No 60
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.27 E-value=3.2e-06 Score=73.72 Aligned_cols=86 Identities=21% Similarity=0.183 Sum_probs=49.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccc---hHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKET---DVIYRALSSKGHHDDMLQTAELVHQSSTDAASSL 290 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~---D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~l 290 (400)
+|+|.|+|||||||+++.|++.+.- .+..++++|+-... +.+.+.+.. |..+ +.................+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~----~g~~~i~~d~~~~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~~~l~~~ 75 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ----KGYFVSLYREPGGTKVGEVLREILLT-EELD-ERTELLLFEASRSKLIEEK 75 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEESSCSSHHHHHHHHHHHH-SCCC-HHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeCCCCCchHHHHHHHHcC-CCCC-HHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998710 12357777764321 112222221 2111 1111111111112334456
Q ss_pred HHHHHhCCCcEEEEC
Q 015774 291 LVTALNEGRDVIMDG 305 (400)
Q Consensus 291 ie~AL~eG~dVIIDg 305 (400)
+..++.+|..||+|.
T Consensus 76 i~~~l~~~~~vi~dr 90 (195)
T 2pbr_A 76 IIPDLKRDKVVILDR 90 (195)
T ss_dssp HHHHHHTTCEEEEES
T ss_pred HHHHHhCCCEEEECc
Confidence 667889999999994
No 61
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.23 E-value=5.5e-06 Score=87.42 Aligned_cols=99 Identities=11% Similarity=0.134 Sum_probs=66.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~a 287 (400)
...|.+|+++|+|||||||+++.|++.+++. | ..++++++|.++ +.+.+. .. +.. .+. ....+.+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~--G~~~~~~lD~D~ir------~~l~~~-~~--f~~-~er--~~~i~ri 458 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQ--GGRSVSLLLGDTVR------HELSSE-LG--FTR-EDR--HTNIQRI 458 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHH--CSSCEEEEEHHHHH------HHTCTT-CC--CSH-HHH--HHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhccc--CCceEEEECcHHHH------HHhccc-cC--CCh-hHH--HHHHHHH
Confidence 3567899999999999999999999998631 2 357889987765 444332 11 111 111 1112233
Q ss_pred HHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 288 SSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
..++...+++|..||.+.+...+..++.+.++++
T Consensus 459 ~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~ 492 (573)
T 1m8p_A 459 AFVATELTRAGAAVIAAPIAPYEESRKFARDAVS 492 (573)
T ss_dssp HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHH
Confidence 4566777889999999977766777777766654
No 62
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.21 E-value=5e-06 Score=71.57 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=30.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|+|+|+|||||||+++.|++.+|+ .+++.|.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~-------~~id~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY-------EFVDTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-------cEEcccHHH
Confidence 36899999999999999999999965 799988764
No 63
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.21 E-value=2.4e-06 Score=73.41 Aligned_cols=34 Identities=24% Similarity=0.097 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|+|.|+|||||||+++.|++.+++ .+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~-------~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI-------PFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-------CEEECcHHH
Confidence 6899999999999999999999965 689988764
No 64
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.20 E-value=8e-06 Score=74.97 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=32.2
Q ss_pred cccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 200 DVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 200 ~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.|.|... ...+..|+|.|+|||||||+++.|++.+++ .++++|++
T Consensus 5 ~~~~p~~~-~~~~~~I~l~G~~GsGKsT~a~~La~~l~~-------~~i~~d~l 50 (233)
T 1ak2_A 5 PAAEPVPE-SPKGVRAVLLGPPGAGKGTQAPKLAKNFCV-------CHLATGDM 50 (233)
T ss_dssp ----------CCCCEEEEECCTTSSHHHHHHHHHHHHTC-------EEEEHHHH
T ss_pred CCCCCCCC-CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------ceecHHHH
Confidence 33444432 345678999999999999999999999955 78998764
No 65
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.20 E-value=2.1e-06 Score=76.39 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=26.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
..|.+|+|.|+|||||||+++.|++.+++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999998754
No 66
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.20 E-value=7.2e-07 Score=79.12 Aligned_cols=39 Identities=21% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh-ccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKE-SFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~-lg~~~~~~~avvIdaDefR 254 (400)
...+..|+|+|+|||||||+++.|++. +|+ .++|+|++-
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~-------~~id~d~~~ 46 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAELDGF-------QHLEVGKLV 46 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHSTTE-------EEEEHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-------EEeeHHHHH
Confidence 445678999999999999999999999 655 899988754
No 67
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=3.6e-06 Score=86.91 Aligned_cols=92 Identities=9% Similarity=0.078 Sum_probs=67.7
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..-.+.|||.+|+++++++...+.+..|++.+..-.. ..+-.+-......+..+++.|+||+||||+|+.+++.
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~------~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKK------NSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHH------TTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhch------hhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999987654221 1111111111235678999999999999999999999
Q ss_pred ccccCCCCCeEEEeCCccccchH
Q 015774 236 SFWSGAATNAVVVEADAFKETDV 258 (400)
Q Consensus 236 lg~~~~~~~avvIdaDefRe~D~ 258 (400)
+++ .++.+++.+++..+.
T Consensus 101 l~~-----~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 101 LGY-----DILEQNASDVRSKTL 118 (516)
T ss_dssp TTC-----EEEEECTTSCCCHHH
T ss_pred cCC-----CEEEEeCCCcchHHH
Confidence 965 677788777765433
No 68
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.19 E-value=1.1e-06 Score=82.57 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|+|+|+|||||||+++.|++.+++ .+++.|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~-------~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGW-------PVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCC-------CEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCC-------eEEeccHHh
Confidence 47999999999999999999999854 799999975
No 69
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.18 E-value=3.8e-06 Score=88.08 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=63.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASS 289 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~ 289 (400)
..|.+|+++|+|||||||+++.|++.++. .+..+.++++|.++ +.+.+.. . +... +. ......+..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~--~G~~~~~ld~D~ir------~~l~~~~-~--f~~~-er--~~~l~~i~~ 435 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQA--RGRKVTLLDGDVVR------THLSRGL-G--FSKE-DR--ITNILRVGF 435 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECHHHHH------HHTCTTC-C--SSHH-HH--HHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhh--cCCeEEEECchHhh------hhhcccc-c--ccHH-HH--HHHHHHHHH
Confidence 45789999999999999999999999853 34567899988765 4454321 1 1111 11 111122333
Q ss_pred HHHHHHhCCCcEEEECcCCChHHHHHHHHH
Q 015774 290 LLVTALNEGRDVIMDGTLSWVPFVEQTIAM 319 (400)
Q Consensus 290 lie~AL~eG~dVIIDgT~~~~~~re~~i~~ 319 (400)
++...++.|..||+|+++..+..++.+.+.
T Consensus 436 ~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~ 465 (546)
T 2gks_A 436 VASEIVKHNGVVICALVSPYRSARNQVRNM 465 (546)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHHHHHTT
T ss_pred HHHHHHhCCCEEEEEcCCCCHHHHHHHHHH
Confidence 566678899999999988877665555433
No 70
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.18 E-value=1.1e-05 Score=71.17 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.|.+|+|.|+|||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999999998
No 71
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.18 E-value=2.6e-06 Score=77.30 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|.+|+|.|+|||||||+++.|++.+++ .+++.|++-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~-------~~i~~d~~~ 40 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL-------AHISAGDLL 40 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC-------EECCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-------ceecHHHHH
Confidence 5678999999999999999999999955 889877643
No 72
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.18 E-value=1.9e-06 Score=82.26 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=59.1
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+.|||++|++++++..+...+..+++. .+.|.++|++|+||+||||+++.+++.+
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~----------------------~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSK----------------------GKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT----------------------TCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc----------------------CCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 457889999999999999888777776663 4567789999999999999999999998
Q ss_pred cccCCCCCeEEEeCCccc
Q 015774 237 FWSGAATNAVVVEADAFK 254 (400)
Q Consensus 237 g~~~~~~~avvIdaDefR 254 (400)
+. +++.+++.++.
T Consensus 73 ~~-----~~~~i~~~~~~ 85 (324)
T 3u61_B 73 NA-----DMMFVNGSDCK 85 (324)
T ss_dssp TE-----EEEEEETTTCC
T ss_pred CC-----CEEEEcccccC
Confidence 54 67778877665
No 73
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.17 E-value=7.5e-06 Score=87.55 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=60.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc---cccCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDA 286 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l---g~~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ 286 (400)
..|.+|+|+|+|||||||+++.|++.+ |+ .++.+|.|.+|. .+... ..-..... ....+.
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~-----~~v~lDgD~iR~------~L~~~-~~fs~~dr-----ee~~r~ 112 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-----PCYTLDGDNIRQ------GLNKN-LGFSPEDR-----EENVRR 112 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-----CEEEESHHHHTT------TTTTT-CCSSHHHH-----HHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-----eEEEechHHhhh------ccCcc-ccCChhhh-----HHHHHH
Confidence 368899999999999999999999998 54 677888777662 22221 01011111 111122
Q ss_pred HHHHHHHHHhCCCcEEEECcCCChHHHHHHHHHHH
Q 015774 287 ASSLLVTALNEGRDVIMDGTLSWVPFVEQTIAMAR 321 (400)
Q Consensus 287 ae~lie~AL~eG~dVIIDgT~~~~~~re~~i~~ar 321 (400)
+..++..+++.|..||.+.+......++.+.++++
T Consensus 113 i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~ 147 (630)
T 1x6v_B 113 IAEVAKLFADAGLVCITSFISPYTQDRNNARQIHE 147 (630)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHH
Confidence 23456667889999998865544445666666554
No 74
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.16 E-value=1e-06 Score=75.40 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|+|+|+|||||||+++.|++.+++ .+++.|.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~-------~~i~~d~~~ 36 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKY-------PIIKGSSFE 36 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCC-------CEEECCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC-------eeecCcccc
Confidence 37899999999999999999999965 789999876
No 75
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.16 E-value=5.5e-06 Score=72.22 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|+|+|+|||||||+++.|++.+++ .+++.|.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~-------~~~d~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL-------VFLDSDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC-------CEEcccHHH
Confidence 5889999999999999999999965 899988765
No 76
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.11 E-value=7.6e-07 Score=78.05 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+|+|+|+|||||||+++.|++.+|+ .+++.|++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~-------~~id~D~~~ 37 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV-------GLLDTDVAI 37 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC-------CEEeCchHH
Confidence 35899999999999999999999966 699988765
No 77
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.07 E-value=1.5e-06 Score=75.12 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+|+|.|+|||||||+++.|+..+++ .++++|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~-------~~id~d~~~ 39 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM-------EFYDSDQEI 39 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC-------EEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEeccHHH
Confidence 468999999999999999999999854 889988654
No 78
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.07 E-value=1.3e-06 Score=75.61 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=31.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-+.|+|.|+|||||||+++.|++.+|+ .++|+|++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~-------~~id~D~~~ 42 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL-------EVLDTDMII 42 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEChHHH
Confidence 458999999999999999999999976 689988764
No 79
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.06 E-value=4.7e-07 Score=81.46 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+.+|+|+|+|||||||+++.|++.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567899999999999999999999987
No 80
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.03 E-value=1e-05 Score=73.10 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.|+|.|+|||||||+++.|++.+|+ .++++|++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~-------~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI-------PQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC-------CEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-------eEEeHHHH
Confidence 4799999999999999999999865 78887654
No 81
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.03 E-value=1.7e-05 Score=75.68 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=32.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
...|.+|.|+|+|||||||+++.|+ .+|+ .+|++|.+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~-------~~id~D~~ 108 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGA-------YIIDSDHL 108 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTC-------EEEEHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCC-------cEEehhHH
Confidence 3568899999999999999999999 5754 79999887
No 82
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.02 E-value=4.1e-06 Score=77.98 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=37.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcccc---CCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~---~~~~~avvIdaDefRe 255 (400)
...|.+|.|+|+|||||||+++.|++.+|++ ..+.++.+++.|+|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4578899999999999999999999998752 0123567999999874
No 83
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.02 E-value=2.3e-06 Score=74.85 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+.+|+++|+|||||||+++.|++.+++ .+++.|++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~-------~~~~~d~~~ 46 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGL-------KYINVGDLA 46 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCC-------eEEEHHHHH
Confidence 45668899999999999999999999955 788877654
No 84
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.99 E-value=4.6e-05 Score=66.55 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc---cccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES---FWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l---g~~~~~~~avvIdaDefR 254 (400)
.++.+|++.|+|||||||+++.|+..+ |+ .++.+++|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~-----~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-----PCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-----CEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCC-----cEEEECChHHH
Confidence 357899999999999999999999987 43 56677877665
No 85
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.99 E-value=2.9e-06 Score=74.81 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=33.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
...|.+|.|+|+|||||||+++.|++. |+ .++|+|++.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~-------~~id~d~~~ 42 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GY-------PVLDLDALA 42 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TC-------CEEEHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CC-------EEEcccHHH
Confidence 457889999999999999999999998 76 799999874
No 86
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.94 E-value=1.2e-05 Score=74.31 Aligned_cols=76 Identities=25% Similarity=0.263 Sum_probs=53.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
++..|+++.+.+.+++.+..+++. +.. ......+. .+.|.-+++.|+||+||||+++.++..++.
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~---~~~------~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~~~~---- 71 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY---LRE------PSRFQKLG--GKIPKGVLMVGPPGTGKTLLAKAIAGEAKV---- 71 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH---HHC------GGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTC----
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH---HhC------HHHHHHcC--CCCCCeEEEECcCCCCHHHHHHHHHHHcCC----
Confidence 467899999999999988888765 221 11111111 234556899999999999999999999853
Q ss_pred CCeEEEeCCccc
Q 015774 243 TNAVVVEADAFK 254 (400)
Q Consensus 243 ~~avvIdaDefR 254 (400)
..+.+++.++.
T Consensus 72 -~~~~i~~~~~~ 82 (257)
T 1lv7_A 72 -PFFTISGSDFV 82 (257)
T ss_dssp -CEEEECSCSST
T ss_pred -CEEEEeHHHHH
Confidence 56778877664
No 87
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.93 E-value=2.6e-05 Score=77.17 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=32.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|.+|+|+|+|||||||++..|+++++ ..+|+.|.+.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~-------~~iis~Ds~q 40 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALP-------CELISVDSAL 40 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-------EEEEEECTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC-------CcEEeccchh
Confidence 356899999999999999999999984 4899999874
No 88
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.92 E-value=2.7e-05 Score=68.25 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+|++.|+|||||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999998
No 89
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.90 E-value=1.9e-05 Score=72.20 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
..|+++.+.+.++..+..+++.++. + ...... ....|.-+++.|+||+||||+|+.+++.++. .
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~------~---~~~~~~--g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~ 66 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKS------P---ERFLQL--GAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----P 66 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHC------C---C--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----C
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHC------H---HHHHHc--CCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----C
Confidence 4688899999998888888765211 0 000000 1245667899999999999999999999854 6
Q ss_pred eEEEeCCccc
Q 015774 245 AVVVEADAFK 254 (400)
Q Consensus 245 avvIdaDefR 254 (400)
.+.++..++.
T Consensus 67 ~~~~~~~~~~ 76 (262)
T 2qz4_A 67 FLAMAGAEFV 76 (262)
T ss_dssp EEEEETTTTS
T ss_pred EEEechHHHH
Confidence 7778877664
No 90
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.89 E-value=3.3e-05 Score=76.95 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.|.+|+|+||+||||||++..||++++ ..+||+|.+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-------~eiIs~Ds~q 75 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-------LEVINSDKMQ 75 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC-------EEEEECCSST
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC-------CcEEcccccc
Confidence 3567999999999999999999999994 4899999983
No 91
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.87 E-value=3.6e-05 Score=71.44 Aligned_cols=29 Identities=21% Similarity=0.459 Sum_probs=26.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
...+.+|++.|+|||||||+++.|++.++
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34788999999999999999999999983
No 92
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.87 E-value=7.7e-06 Score=73.79 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.|.+|.|+|++||||||+++.|++ +|+ .++++|.+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-------~~id~D~~~ 38 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGI-------NVIDADIIA 38 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTC-------EEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCC-------EEEEccHHH
Confidence 578999999999999999999998 754 899988763
No 93
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.86 E-value=6.9e-06 Score=73.94 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+|.|.|+|||||||+++.|++.+|+ .++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~-------~~~d~g~i~ 40 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQW-------HLLDSGAIY 40 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-------CcccCccee
Confidence 568999999999999999999999865 789988765
No 94
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.86 E-value=7e-06 Score=74.74 Aligned_cols=38 Identities=26% Similarity=0.292 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
....+|.|+|++||||||+++.|++.+|+ .+||+|.+-
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~-------~vid~D~~~ 47 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA-------HVVNVDRIG 47 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCC-------EEEECcHHH
Confidence 34568999999999999999999999855 899999874
No 95
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.85 E-value=3.4e-05 Score=73.78 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=60.1
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+.+|+..|+.+++...+++.+..+++..+.- ...+.-+++.|+||+||||+|+.+++.+
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~------------------~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR------------------NECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT------------------TSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc------------------CCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999988888874321 1234457999999999999999999998
Q ss_pred cccCCCCCeEEEeCCccccchHHHHHH
Q 015774 237 FWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 237 g~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
+. ..+.++...+.........+
T Consensus 80 ~~-----~~~~~~~~~~~~~~~~~~~~ 101 (338)
T 3pfi_A 80 SA-----NIKTTAAPMIEKSGDLAAIL 101 (338)
T ss_dssp TC-----CEEEEEGGGCCSHHHHHHHH
T ss_pred CC-----CeEEecchhccchhHHHHHH
Confidence 54 67778877665433333333
No 96
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.85 E-value=3.7e-05 Score=76.17 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=52.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc---chH-----HHHHHhcCCC------CChhhHhHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE---TDV-----IYRALSSKGH------HDDMLQTAE 277 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe---~D~-----irk~L~~~G~------~~d~~~aa~ 277 (400)
|.+|+|+||+||||||++..|++.+ +..+|++|.+-- .|. --..+.+..+ ..+..+.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~ 75 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-------NGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVA 75 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-------TEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-------ccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHH
Confidence 5689999999999999999999998 458999998721 100 0011111100 011122222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEC
Q 015774 278 LVHQSSTDAASSLLVTALNEGRDVIMDG 305 (400)
Q Consensus 278 ~v~~~~~~~ae~lie~AL~eG~dVIIDg 305 (400)
.. ...+...++...+.|..+||-|
T Consensus 76 ~F----~~~a~~~i~~i~~~gk~pIlVG 99 (322)
T 3exa_A 76 DF----QDLATPLITEIHERGRLPFLVG 99 (322)
T ss_dssp HH----HHHHHHHHHHHHHTTCEEEEES
T ss_pred HH----HHHHHHHHHHHHhCCCcEEEEc
Confidence 22 3455668888899999877774
No 97
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.84 E-value=0.00011 Score=67.88 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAAS 288 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae 288 (400)
.+.+|++.|++||||||+++.|++.+. ..+..++... ++.=.--..+++.+.......-..++....+... .....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~ 82 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLA 82 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999983 2333444332 1100000113344433211010112222222211 23344
Q ss_pred HHHHHHHhCCCcEEEEC
Q 015774 289 SLLVTALNEGRDVIMDG 305 (400)
Q Consensus 289 ~lie~AL~eG~dVIIDg 305 (400)
..+..++++|..||+|-
T Consensus 83 ~~i~p~l~~g~~Vi~DR 99 (213)
T 4edh_A 83 GVIRPALARGAVVLCDR 99 (213)
T ss_dssp HTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHCCCEEEECc
Confidence 56888999999999993
No 98
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.84 E-value=6.4e-06 Score=73.52 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+|.|.|+|||||||+++.|+. +|+ .++|+|.+.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~-------~~id~d~~~ 36 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGV-------PLVDADVVA 36 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTC-------CEEEHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCC-------cccchHHHH
Confidence 35799999999999999999987 754 789988764
No 99
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.83 E-value=2.2e-05 Score=68.80 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=46.7
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.+++..|+.+++.......+..++.. .+.|..+++.|+||+||||+++.+++.+++
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSL----------------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHH----------------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHc----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5678999999999888777766666554 234568999999999999999999998753
No 100
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.82 E-value=1.7e-05 Score=70.93 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=34.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
...+.+|.|+|+|||||||+++.|+..+ .++.+++.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~------~~~~~i~~D~~~ 57 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL------PNCSVISQDDFF 57 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS------TTEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc------CCcEEEeCCccc
Confidence 4567899999999999999999999987 145899999875
No 101
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=1.3e-05 Score=75.30 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=52.0
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..+.+||..|+.+++.+.+...+..+++. .+.|. +++.|+||+||||+++.+++.+.
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT----------------------GSMPH-LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHH----------------------TCCCE-EEEESCTTSSHHHHHHHHHHHHH
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHc----------------------CCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 35679999999999988887777766654 23445 89999999999999999999863
Q ss_pred ccCCCCCeEEEeCCc
Q 015774 238 WSGAATNAVVVEADA 252 (400)
Q Consensus 238 ~~~~~~~avvIdaDe 252 (400)
.+......+.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 72 GENWRHNFLELNASD 86 (327)
T ss_dssp GGGHHHHEEEEETTC
T ss_pred CCcccCceEEeeccc
Confidence 210011245666544
No 102
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=1.8e-05 Score=76.50 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=46.5
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+.|||+.|.++.++..+...+...++. .+.|. +++.|+||+||||+++.++..+
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~----------------------g~~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDE----------------------GKLPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHT----------------------TCCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhc----------------------CCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999988877777666654 33455 8999999999999999999986
No 103
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.78 E-value=5e-05 Score=66.08 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=48.1
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.+++..|+.+++.......+..+++. ...|. +++.|+||+||||+++.+++.+..
T Consensus 8 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVER----------------------KNIPH-LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp HHHTSCSSGGGCCSCHHHHHHHHHHHHT----------------------TCCCC-EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHhcCCCCHHHHcCcHHHHHHHHHHHhC----------------------CCCCe-EEEECCCCCCHHHHHHHHHHHHhc
Confidence 3568888999988877766655555433 11222 899999999999999999987621
Q ss_pred cCCCCCeEEEeCCccc
Q 015774 239 SGAATNAVVVEADAFK 254 (400)
Q Consensus 239 ~~~~~~avvIdaDefR 254 (400)
.......+.++.....
T Consensus 65 ~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 65 ENWRDNFIEMNASDER 80 (226)
T ss_dssp GGGGGGEEEEETTCTT
T ss_pred cccccceEEecccccc
Confidence 1111234556654433
No 104
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.77 E-value=9.7e-06 Score=71.68 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|+|+|||||||+++.|++.+|+ .+++.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~-------~~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV-------PYLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC-------CEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC-------ceeccchHH
Confidence 8999999999999999999999965 799988776
No 105
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.77 E-value=8.6e-05 Score=65.05 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+|+|.|+|||||||+++.|++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999999954
No 106
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.77 E-value=9.2e-05 Score=69.33 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE-E-eCCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV-V-EADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TD 285 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv-I-daDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~ 285 (400)
...+.+|++.|++||||||+++.|++.++. ..+.++++ . .++.=.-...+++.+......+ ..+....+... ..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~-~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~--~~~e~llf~a~R~~ 94 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE-IYGVNNVVLTREPGGTLLNESVRNLLFKAQGLD--SLSELLFFIAMRRE 94 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH-HHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCC--HHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh-ccCceeeEeeeCCCCChHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHH
Confidence 467899999999999999999999998832 02334444 2 2322110112334444321111 11111121111 33
Q ss_pred HHHHHHHHHHhCCCcEEEEC
Q 015774 286 AASSLLVTALNEGRDVIMDG 305 (400)
Q Consensus 286 ~ae~lie~AL~eG~dVIIDg 305 (400)
....++..++++|..||+|-
T Consensus 95 ~~~~~I~paL~~g~~VI~DR 114 (223)
T 3ld9_A 95 HFVKIIKPSLMQKKIVICDR 114 (223)
T ss_dssp HHHHTHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHhcCCeEEEcc
Confidence 34456778999999999995
No 107
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.75 E-value=9.9e-05 Score=72.95 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|.+|+|+||+||||||++..|++.+ +..+|++|.+-
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~q 45 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL-------PVELISVDSAL 45 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-------CEEEEECCTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC-------CCcEEeccccc
Confidence 457899999999999999999999998 45899999863
No 108
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.73 E-value=3.5e-05 Score=73.95 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=48.3
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+.|||..|+.+++...+...+...++. .+.|..+++.|+||+||||+++.+++.+++
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~----------------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSL----------------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHH----------------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHh----------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5679999999999988877777666644 345668999999999999999999998854
No 109
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=8.7e-06 Score=78.14 Aligned_cols=56 Identities=18% Similarity=0.352 Sum_probs=43.3
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.|||+.|+.++++..+...+..++.. ..+.|. +++.|+||+||||+++.++..+
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~~---------------------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSDQ---------------------PRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTTC---------------------TTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHhh---------------------CCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999988776655444310 134566 8999999999999999999965
No 110
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.70 E-value=6.7e-05 Score=70.43 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=55.1
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
.+++..|+.+.+...+++.+..+++.-.. . ..+...+ ...|..+++.|+||+||||+|+.++..++.
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~--~------~~~~~~~---~~~~~~vll~Gp~GtGKT~la~~la~~~~~-- 80 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSV--R------PELFTGL---RAPAKGLLLFGPPGNGKTLLARAVATECSA-- 80 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHH--C------GGGSCGG---GCCCSEEEEESSSSSCHHHHHHHHHHHTTC--
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhh--C------HHHHhcC---CCCCCeEEEECcCCCCHHHHHHHHHHHhCC--
Confidence 34567899999999998888887764111 0 1111111 235678999999999999999999999853
Q ss_pred CCCCeEEEeCCccc
Q 015774 241 AATNAVVVEADAFK 254 (400)
Q Consensus 241 ~~~~avvIdaDefR 254 (400)
..+.+++.++.
T Consensus 81 ---~~~~i~~~~l~ 91 (297)
T 3b9p_A 81 ---TFLNISAASLT 91 (297)
T ss_dssp ---EEEEEESTTTS
T ss_pred ---CeEEeeHHHHh
Confidence 56667766554
No 111
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=8.2e-05 Score=76.33 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=54.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
-+|++|.+-+.+++.+.+.|+--.. . ..+...+ .-+.|.-|||.||||+|||++|+++|.++++ +
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~--~------p~~f~~~--g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-----~ 242 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLK--N------PEIFQRV--GIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-----N 242 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHH--C------HHHHHHH--CCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----E
T ss_pred CChhHhCChHHHHHHHHHHHHHHHh--C------HHHHHhC--CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----C
Confidence 5789999988999888888774111 0 0111111 1367889999999999999999999999965 6
Q ss_pred eEEEeCCccc
Q 015774 245 AVVVEADAFK 254 (400)
Q Consensus 245 avvIdaDefR 254 (400)
.+.+++.++.
T Consensus 243 ~~~v~~s~l~ 252 (437)
T 4b4t_L 243 FIFSPASGIV 252 (437)
T ss_dssp EEEEEGGGTC
T ss_pred EEEEehhhhc
Confidence 7777766654
No 112
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.68 E-value=5.1e-05 Score=71.71 Aligned_cols=82 Identities=23% Similarity=0.235 Sum_probs=60.0
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
.+|+..|+.+++.....+.+..+++....- ...+..+++.|+||+||||+|+.+++.++.
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~------------------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-- 64 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR------------------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-- 64 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH------------------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC--
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc------------------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC--
Confidence 478899999999988888888777763221 123456789999999999999999999853
Q ss_pred CCCCeEEEeCCccccchHHHHHHhc
Q 015774 241 AATNAVVVEADAFKETDVIYRALSS 265 (400)
Q Consensus 241 ~~~~avvIdaDefRe~D~irk~L~~ 265 (400)
..+.++...+.....+...+..
T Consensus 65 ---~~~~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 65 ---NLRVTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp ---CEEEECTTTCCSHHHHHHHHTT
T ss_pred ---CEEEEeccccCChHHHHHHHHH
Confidence 6677887776544444444433
No 113
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.68 E-value=1.8e-05 Score=70.31 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.|+|+|||||||+++.|+. +|+ .+++.|.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~-------~~i~~d~~~ 35 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA-------YVLDADKLI 35 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC-------EEEEHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC-------EEEEccHHH
Confidence 689999999999999999999 754 899988864
No 114
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00013 Score=74.24 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=53.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHH-HHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEE-MKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee-~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
.-+|++|-+-+.+++.+.+.|+- ++. -++...+ .-+.|.-+||.||||+|||++|+++|.++++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~---------pe~f~~~--gi~~prGvLL~GPPGTGKTllAkAiA~e~~~---- 208 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKH---------PELFESL--GIAQPKGVILYGPPGTGKTLLARAVAHHTDC---- 208 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHC---------HHHHHHH--TCCCCCCEEEESCSSSSHHHHHHHHHHHHTC----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhC---------HHHHHhC--CCCCCCceEEeCCCCCCHHHHHHHHHHhhCC----
Confidence 35899999988888888887763 110 0000000 1356788999999999999999999999965
Q ss_pred CCeEEEeCCccc
Q 015774 243 TNAVVVEADAFK 254 (400)
Q Consensus 243 ~~avvIdaDefR 254 (400)
+.+.+++.++.
T Consensus 209 -~f~~v~~s~l~ 219 (405)
T 4b4t_J 209 -KFIRVSGAELV 219 (405)
T ss_dssp -EEEEEEGGGGS
T ss_pred -CceEEEhHHhh
Confidence 66777766554
No 115
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00011 Score=75.30 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=54.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
..+|++|.+-+.+++.+.+.|+--.. . ..+... ..-+.|.-|||.||||+|||++|+++|.++++
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~--~------pe~f~~--~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~----- 241 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMK--R------ADKFKD--MGIRAPKGALMYGPPGTGKTLLARACAAQTNA----- 241 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHH--C------SHHHHH--HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHh--C------HHHHHh--CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-----
Confidence 36899999999999888877764111 0 000000 01367889999999999999999999999965
Q ss_pred CeEEEeCCccc
Q 015774 244 NAVVVEADAFK 254 (400)
Q Consensus 244 ~avvIdaDefR 254 (400)
+.+.+++.++.
T Consensus 242 ~f~~v~~s~l~ 252 (434)
T 4b4t_M 242 TFLKLAAPQLV 252 (434)
T ss_dssp EEEEEEGGGGC
T ss_pred CEEEEehhhhh
Confidence 66777766554
No 116
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.65 E-value=5.2e-05 Score=74.43 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=56.4
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
++..+++..|+.+.+...++..+.+++..- +.. ..+...+ ...|.-+||.|+||+||||+|+.++..++
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~--~~~------~~~~~~~---~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWP--MLR------PDIFTGL---RGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHH--HHC------TTTSCGG---GSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHH--hhC------hHhHhhc---cCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 334456778899999888888887777641 110 1111111 24567899999999999999999999985
Q ss_pred ccCCCCCeEEEeCCccc
Q 015774 238 WSGAATNAVVVEADAFK 254 (400)
Q Consensus 238 ~~~~~~~avvIdaDefR 254 (400)
. ..+.+++.++.
T Consensus 143 ~-----~~~~i~~~~l~ 154 (357)
T 3d8b_A 143 A-----TFFSISASSLT 154 (357)
T ss_dssp C-----EEEEEEGGGGC
T ss_pred C-----eEEEEehHHhh
Confidence 4 66777776654
No 117
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.65 E-value=5.6e-05 Score=67.87 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=35.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
...+.+|.|+|++||||||+++.|+..+. ..+..+.+++.|.+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccCcccC
Confidence 35688999999999999999999998762 2244677788888763
No 118
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.65 E-value=2e-06 Score=78.44 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc--c--------------cCCCCCeEEEeCCccccchHHHHHHhcCCCCChhhHhHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESF--W--------------SGAATNAVVVEADAFKETDVIYRALSSKGHHDDMLQTAE 277 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg--~--------------~~~~~~avvIdaDefRe~D~irk~L~~~G~~~d~~~aa~ 277 (400)
.|+|+||+||||||+++.|.+++. + +.+|.++.+++.++|. +.+... . +..++.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~------~~i~~g-~---flE~~~ 72 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK------SMIKNN-E---FIEWAQ 72 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH------HHHHTT-C---EEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHH------HHHHcC-C---EEEEEE
Confidence 378999999999999999988752 1 2335567777766664 223221 1 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEECcC
Q 015774 278 LVHQSSTDAASSLLVTALNEGRDVIMDGTL 307 (400)
Q Consensus 278 ~v~~~~~~~ae~lie~AL~eG~dVIIDgT~ 307 (400)
+|...+.....-++..+++|.+||+|...
T Consensus 73 -~~g~~YGt~~~~v~~~l~~g~~vil~id~ 101 (186)
T 1ex7_A 73 -FSGNYYGSTVASVKQVSKSGKTCILDIDM 101 (186)
T ss_dssp -ETTEEEEEEHHHHHHHHHHTSEEEEECCH
T ss_pred -EcCceeeeecceeeehhhCCCEEEecCCH
Confidence 00101111112345588899999999753
No 119
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.63 E-value=4.8e-06 Score=76.81 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+.+|+|.||+||||||+++.|+..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 356789999999999999999999876
No 120
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.63 E-value=3.7e-05 Score=75.65 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHH
Q 015774 154 LKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIM 233 (400)
Q Consensus 154 ~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA 233 (400)
+.+.+...+.+.+|+++.+...+++.+.+.+..-.. . ..+.. .....|.-|||.|+||+||||+|+.++
T Consensus 37 ~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~--~------~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 37 LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVK--F------PHLFK---GNRKPTSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp ----------CCCGGGSCCGGGHHHHHHHHTHHHHH--C------GGGGC---SSCCCCCCEEEECSTTSCHHHHHHHHH
T ss_pred HhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHh--C------HHHHh---cCCCCCceEEEECCCCCcHHHHHHHHH
Confidence 334566677788999999999999988887764111 0 01111 112455678899999999999999999
Q ss_pred HhccccCCCCCeEEEeCCcc
Q 015774 234 KESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 234 ~~lg~~~~~~~avvIdaDef 253 (400)
..++. +.+.+++.++
T Consensus 106 ~~~~~-----~~~~v~~~~l 120 (355)
T 2qp9_X 106 TEANS-----TFFSVSSSDL 120 (355)
T ss_dssp HHHTC-----EEEEEEHHHH
T ss_pred HHhCC-----CEEEeeHHHH
Confidence 99854 5566665443
No 121
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.62 E-value=2.1e-05 Score=70.65 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
|.+|.|+|+|||||||+++.|++.+|+ .+++.|.+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~-------~~~~~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM-------IYVDTGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-------EEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-------ceecCChHH
Confidence 678999999999999999999999865 899988764
No 122
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.62 E-value=2.4e-05 Score=73.78 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..|.+|.+.|+|||||||+++.|++.+|+ .+++.|.+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~-------~~~d~g~~~ 44 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGA-------RYLDTGAMY 44 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CcccCCcHH
Confidence 45789999999999999999999999965 789988764
No 123
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.61 E-value=0.00012 Score=68.25 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.+|.|.|++||||||+++.||+++|+ .++|.|.++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~-------~~~d~~~~~ 49 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGI-------HFYDDDILK 49 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTC-------EEECHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCC-------cEEcHHHHH
Confidence 4679999999999999999999999976 789988766
No 124
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.61 E-value=8.7e-05 Score=75.68 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=31.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.+|+|+||+||||||++..|++.++ ..+|++|.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-------~~iis~Ds~ 36 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-------GEVINSDSM 36 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-------EEEEECCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-------CeEeecCcc
Confidence 56899999999999999999999984 478999984
No 125
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.61 E-value=2.4e-05 Score=72.14 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=50.2
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
...+.+|+++.+.+.++..+..++..+.. ..+...+. -..|.-+++.|+||+||||+++.++..++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~---------~~~~~~~~--~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--- 74 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEAR--- 74 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHC---------HHHHHHTT--CCCCSEEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHC---------HHHHHHcC--CCCCCeEEEECCCCCCHHHHHHHHHHHhC---
Confidence 34456888888888888887777665321 01111111 12233489999999999999999999874
Q ss_pred CCCCeEEEeCCc
Q 015774 241 AATNAVVVEADA 252 (400)
Q Consensus 241 ~~~~avvIdaDe 252 (400)
.+.+.+++.+
T Consensus 75 --~~~i~~~~~~ 84 (254)
T 1ixz_A 75 --VPFITASGSD 84 (254)
T ss_dssp --CCEEEEEHHH
T ss_pred --CCEEEeeHHH
Confidence 3667776543
No 126
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.61 E-value=2.9e-05 Score=71.30 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+.+|.|+|+|||||||+++.|++.+|+ .++++|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~-------~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF-------TYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC-------EEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC-------ceecCCCee
Confidence 46779999999999999999999999965 799988775
No 127
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.60 E-value=4.6e-05 Score=71.39 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=44.9
Q ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 159 MAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 159 ~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+||..|+.+++.+.+...+..++.. .+.|. +++.|+||+||||+++.+++.+
T Consensus 12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 12 VEKYRPQVLSDIVGNKETIDRLQQIAKD----------------------GNMPH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp HHHTCCSSGGGCCSCTHHHHHHHHHHHS----------------------CCCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHCCHHHHHHHHHHHHc----------------------CCCCe-EEEECcCCCCHHHHHHHHHHHh
Confidence 5679999999999988877766666543 23455 8999999999999999999986
No 128
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00017 Score=73.75 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=53.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
-+|++|.+-+.+++.+.+.++-... . ..+...+ .-+.|.-||+.||||+|||++|+++|.+++. +
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~--~------p~~~~~~--g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-----~ 233 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLV--Q------ADLYEQI--GIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-----A 233 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHH--C------HHHHHHH--CCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-----E
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHh--C------HHHHHhC--CCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----C
Confidence 5899999988888888887764111 0 0111111 1367889999999999999999999999965 6
Q ss_pred eEEEeCCccc
Q 015774 245 AVVVEADAFK 254 (400)
Q Consensus 245 avvIdaDefR 254 (400)
.+.+++.++.
T Consensus 234 ~~~v~~~~l~ 243 (428)
T 4b4t_K 234 FIRVNGSEFV 243 (428)
T ss_dssp EEEEEGGGTC
T ss_pred eEEEecchhh
Confidence 6777765554
No 129
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00016 Score=74.78 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=65.3
Q ss_pred ccchhhhhhhcCcchhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCE
Q 015774 134 SHASLMISQVLSVESEKKTKLKDFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPV 213 (400)
Q Consensus 134 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~ 213 (400)
++.++.|...|-.+..+.-. .+-++..=.-+|++|.+-+.+++.+.+.|+--.. . ..+...+ .-+.|.
T Consensus 177 ~~~~~~i~~~lp~~~d~~v~--~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~--~------pe~f~~~--Gi~ppr 244 (467)
T 4b4t_H 177 DRSKYNIELPLPPRIDPSVT--MMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLL--S------PERFATL--GIDPPK 244 (467)
T ss_dssp CTTSCCCCCSSCSSSCCCCC--CCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHH--C------HHHHHHH--TCCCCS
T ss_pred ccCcceeeecCCCccCCccc--eeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhc--C------HHHHHHC--CCCCCC
Confidence 44555666666655443111 0111111226899999999999988887763100 0 0000000 136788
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-|||.||||+|||++|+++|.++++ +.+.+++.++.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~~~-----~fi~vs~s~L~ 280 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRTDA-----TFIRVIGSELV 280 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHHTC-----EEEEEEGGGGC
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCC-----CeEEEEhHHhh
Confidence 9999999999999999999999965 66777766554
No 130
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.59 E-value=5.5e-05 Score=75.35 Aligned_cols=35 Identities=23% Similarity=0.512 Sum_probs=32.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.+|+|+|++||||||++..|++.+ ++.+|+.|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l-------~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKF-------NGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-------TEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHc-------CCceeccccc
Confidence 4699999999999999999999998 4589999998
No 131
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.58 E-value=0.00033 Score=65.98 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=51.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC-eEEEe-CCccccchHHHHHHhcCCCCChh-hHhHH-HHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN-AVVVE-ADAFKETDVIYRALSSKGHHDDM-LQTAE-LVHQSSTD 285 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~-avvId-aDefRe~D~irk~L~~~G~~~d~-~~aa~-~v~~~~~~ 285 (400)
..+.+|++.|++||||||+++.|++.+.. .+.. ++... ++.=.-...+++.+......... ..+.. ++...-..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~--~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ--NGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999998842 3334 33332 11100012233334321000111 11111 12122234
Q ss_pred HHHHHHHHHHhCCCcEEEE
Q 015774 286 AASSLLVTALNEGRDVIMD 304 (400)
Q Consensus 286 ~ae~lie~AL~eG~dVIID 304 (400)
.....+..++++|..||+|
T Consensus 103 ~~~~~I~paL~~g~~VI~D 121 (236)
T 3lv8_A 103 LVENVIKPALARGEWVVGD 121 (236)
T ss_dssp HHHHTHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4455788899999999999
No 132
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00029 Score=72.42 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=55.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
=.-+|++|-+-+.+++.+.+.|+-- .. . .++...+ .-+.|.-|||.||||+|||++|+++|.+++.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~P---l~--~---pe~f~~~--Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~---- 242 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELP---LT--H---PELYEEM--GIKPPKGVILYGAPGTGKTLLAKAVANQTSA---- 242 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHH---HH--C---CHHHHHH--TCCCCSEEEEESSTTTTHHHHHHHHHHHHTC----
T ss_pred CCCcceecCcHHHHHHHHHHHHHHH---Hh--C---HHHHHhC--CCCCCCCCceECCCCchHHHHHHHHHHHhCC----
Confidence 3468999999999998888887741 10 0 0111101 1367889999999999999999999999965
Q ss_pred CCeEEEeCCccc
Q 015774 243 TNAVVVEADAFK 254 (400)
Q Consensus 243 ~~avvIdaDefR 254 (400)
+.+.+++.++.
T Consensus 243 -~fi~v~~s~l~ 253 (437)
T 4b4t_I 243 -TFLRIVGSELI 253 (437)
T ss_dssp -EEEEEESGGGC
T ss_pred -CEEEEEHHHhh
Confidence 66777766654
No 133
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.57 E-value=0.00011 Score=68.35 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=51.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
+-+|+.+.+.+.+++.+.+.+.....- ..+...+ ....|.-+++.|+||+||||+++.++..++.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~--------~~~~~~~--~~~~~~~~ll~G~~GtGKT~la~~la~~~~~----- 77 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKH--------PELFEKV--GIEPPKGILLYGPPGTGKTLLAKAVATETNA----- 77 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHC--------HHHHHHH--CCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhC--------HHHHHhc--CCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----
Confidence 357888888888888887776542110 0000000 0245667999999999999999999999853
Q ss_pred CeEEEeCCccc
Q 015774 244 NAVVVEADAFK 254 (400)
Q Consensus 244 ~avvIdaDefR 254 (400)
..+.++..++.
T Consensus 78 ~~~~v~~~~~~ 88 (285)
T 3h4m_A 78 TFIRVVGSELV 88 (285)
T ss_dssp EEEEEEGGGGC
T ss_pred CEEEEehHHHH
Confidence 66677766553
No 134
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.57 E-value=8.1e-05 Score=72.29 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=52.5
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.....+|++.|+...+...+...++..++..+. ....|..+++.|+||+||||+++.++..+
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~------------------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKM------------------RGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH------------------HTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHh------------------cCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345678999999999888777777777664211 02345678999999999999999999998
Q ss_pred cccCCCCCeEEEeCCcc
Q 015774 237 FWSGAATNAVVVEADAF 253 (400)
Q Consensus 237 g~~~~~~~avvIdaDef 253 (400)
+. +....++..+
T Consensus 76 ~~-----~~~~~sg~~~ 87 (334)
T 1in4_A 76 QT-----NIHVTSGPVL 87 (334)
T ss_dssp TC-----CEEEEETTTC
T ss_pred CC-----CEEEEechHh
Confidence 53 4444555443
No 135
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.57 E-value=0.00019 Score=67.21 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=47.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC----CCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHH-H
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA----ATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQ-S 282 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~----~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~-~ 282 (400)
...+.+|++.|++||||||+++.|++.+.. . +..++... ++.=..-..+++.+... ...+ .+....+. .
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~--~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~-~~~~--~~~~llf~a~ 96 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQE--RLGPAGRHVVVTREPGGTRLGETLREILLNQ-PMDL--ETEALLMFAG 96 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHH--HHGGGTCCEEEEESSSSSHHHHHHHHHHHHS-CCCH--HHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHh--hccccceeeeeecCCCCChHHHHHHHHHHcC-CCCH--HHHHHHHHHH
Confidence 356789999999999999999999999832 1 22333332 11000001133333331 1111 11111111 1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEE
Q 015774 283 STDAASSLLVTALNEGRDVIMD 304 (400)
Q Consensus 283 ~~~~ae~lie~AL~eG~dVIID 304 (400)
-+......+..++++|..||+|
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~D 118 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSD 118 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEe
Confidence 1333445788899999999999
No 136
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.57 E-value=2.3e-05 Score=72.37 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.|.+|+|.|+|||||||+++.|++.+|+ ..++.|++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~-------~~~~~G~i 61 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL-------QHLSSGHF 61 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC-------CCEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC-------eEecHHHH
Confidence 4789999999999999999999999865 55665543
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.56 E-value=6.6e-05 Score=63.75 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=38.7
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.+++..|+.+++.....+.+. +. .. ...+..+++.|+||+||||+++.+++.+
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~l~---~~----l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 12 LTERAEQGKLDPVIGRDEEIRRTI---QV----LQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHH---HH----HT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccchHHHHHHH---HH----Hh----------------cCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 455678888888877654322222 21 10 1234567899999999999999999987
No 138
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.56 E-value=6.4e-05 Score=67.09 Aligned_cols=40 Identities=18% Similarity=0.393 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+++.+|.|.|++||||||+++.|+..++ +.+.+++.|.+-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG-----ERVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG-----GGEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecCccc
Confidence 4678999999999999999999999874 135788888754
No 139
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=3.1e-05 Score=73.81 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-..+.|||..|+.++++..+.+.+..+++. ...|. +++.|+||+||||+++.+++.+
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKS----------------------ANLPH-MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC----------------------TTCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhc----------------------CCCCE-EEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999988877655544432 22344 8999999999999999999986
Q ss_pred ccc-CCCCCeEEEeCCccc
Q 015774 237 FWS-GAATNAVVVEADAFK 254 (400)
Q Consensus 237 g~~-~~~~~avvIdaDefR 254 (400)
+.+ .....++.+++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 83 YGPDLMKSRILELNASDER 101 (353)
T ss_dssp HHHHHHTTSEEEECSSSCC
T ss_pred CCCcccccceEEEcccccc
Confidence 420 001245566665543
No 140
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.54 E-value=6.9e-05 Score=71.31 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=44.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHH-HHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVE-EMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~lie-e~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
-+|++|.+-+.+++.+.+.+. .+.. ..+...+. -..|.-++|.|+||+||||+++.|+..++.
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~---------~~~l~~~~--l~~~~GvlL~Gp~GtGKTtLakala~~~~~----- 70 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRN---------PDQFKALG--LVTPAGVLLAGPPGCGKTLLAKAVANESGL----- 70 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHS---------HHHHHHTT--CCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhC---------HHHHHHcC--CCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----
Confidence 468888888888887776554 2110 11111111 122334999999999999999999999853
Q ss_pred CeEEEeCCccc
Q 015774 244 NAVVVEADAFK 254 (400)
Q Consensus 244 ~avvIdaDefR 254 (400)
+.+.+++.++.
T Consensus 71 ~~i~i~g~~l~ 81 (274)
T 2x8a_A 71 NFISVKGPELL 81 (274)
T ss_dssp EEEEEETTTTC
T ss_pred CEEEEEcHHHH
Confidence 56778776553
No 141
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.54 E-value=3.3e-05 Score=76.37 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=58.3
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
++..+++..|+.+++...+++.+..++..... . ..+...+ ...+.-+||.|+||+|||++|+.++.+++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~--~------~~~~~~~---~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSL--R------PELFTGL---RAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHH--C------TTTSCGG---GCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhcc--C------HHHhccc---CCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 44556788999999999999888888764211 0 1111111 23466899999999999999999999985
Q ss_pred ccCCCCCeEEEeCCccc
Q 015774 238 WSGAATNAVVVEADAFK 254 (400)
Q Consensus 238 ~~~~~~~avvIdaDefR 254 (400)
. .++.+++.++.
T Consensus 174 ~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 174 A-----TFFNISAASLT 185 (389)
T ss_dssp C-----EEEEECSCCC-
T ss_pred C-----cEEEeeHHHhh
Confidence 4 67778877665
No 142
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.54 E-value=4e-05 Score=71.68 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+.+|.|.|++||||||+++.|++++|+ .+++.|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-------~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW-------RLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC-------EEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC-------CcCCCCcee
Confidence 34578999999999999999999999976 788877654
No 143
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.53 E-value=2.7e-05 Score=74.98 Aligned_cols=43 Identities=30% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
.+.+|.|+|++||||||+++.|++.++. .+.++.+|++|+|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--EGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHH--HTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhh--cCCCeeEeecchhhc
Confidence 4668999999999999999999998741 122478999999974
No 144
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.53 E-value=0.00014 Score=70.49 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=53.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
+-+|+++.+.+.+++.+.+.+.--.. . ..+.. ....+|.-+||.|+||+|||++|+.++..+. +.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~--~------~~~~~---~~~~~~~~iLL~GppGtGKT~la~ala~~~~----~~ 72 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIK--F------PHLFT---GKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NS 72 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHH--C------GGGSC---TTCCCCSEEEEESSSSSCHHHHHHHHHHHTT----SC
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHh--C------HHHHh---CCCCCCceEEEECCCCccHHHHHHHHHHHcC----CC
Confidence 45799999999999888888764111 0 01111 1134567899999999999999999999872 13
Q ss_pred CeEEEeCCccc
Q 015774 244 NAVVVEADAFK 254 (400)
Q Consensus 244 ~avvIdaDefR 254 (400)
+.+.+++.++.
T Consensus 73 ~~~~i~~~~l~ 83 (322)
T 1xwi_A 73 TFFSISSSDLV 83 (322)
T ss_dssp EEEEEECCSSC
T ss_pred cEEEEEhHHHH
Confidence 56667766553
No 145
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.52 E-value=0.00011 Score=72.38 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
...|.+|.|.|++||||||+++.|...+.-...++.+.+++.|.|.-
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 46799999999999999999999998873111245678899999863
No 146
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.49 E-value=6.8e-05 Score=63.96 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=39.0
Q ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 158 IMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.+|+..|+.+++....... +++. +. ...+..+++.|+||+||||+++.+++.+
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~---l~~~----l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 12 LTALARAGKLDPVIGRDTEIRR---AIQI----LS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHH---HHHH----HT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHhccccchhhcchHHHHH---HHHH----Hh----------------CCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567888899988776553222 2222 11 1234467999999999999999999987
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=8.5e-05 Score=70.99 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=50.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
+..|+++.+...+++.+.++++.-.. . ......+ .-..|..++|.|+||+||||+|+.++..++.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~--~------~~~~~~~--~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~----- 75 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVE--H------PDKFLKF--GMTPSKGVLFYGPPGCGKTLLAKAIANECQA----- 75 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHH--C------HHHHHHH--CCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhh--C------HHHHHHc--CCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----
Confidence 45788898888888888887764110 0 0000000 1246778999999999999999999999843
Q ss_pred CeEEEeCCc
Q 015774 244 NAVVVEADA 252 (400)
Q Consensus 244 ~avvIdaDe 252 (400)
+.+.+++.+
T Consensus 76 ~~i~v~~~~ 84 (301)
T 3cf0_A 76 NFISIKGPE 84 (301)
T ss_dssp EEEEECHHH
T ss_pred CEEEEEhHH
Confidence 556666433
No 148
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.48 E-value=0.00012 Score=70.52 Aligned_cols=77 Identities=17% Similarity=0.150 Sum_probs=54.4
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
.+.+.+|+++.+...+++.+..++.--... ..+. ......|.-+|+.|+||+|||++|+.+++.++.
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~--------~~~~---~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-- 77 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKF--------PHLF---KGNRKPTSGILLYGPPGTGKSYLAKAVATEANS-- 77 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHC--------GGGC---CTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhC--------HHHH---hcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--
Confidence 345568999999999999988887642110 0010 111345678999999999999999999999853
Q ss_pred CCCCeEEEeCCcc
Q 015774 241 AATNAVVVEADAF 253 (400)
Q Consensus 241 ~~~~avvIdaDef 253 (400)
..+.+++.++
T Consensus 78 ---~~~~v~~~~l 87 (322)
T 3eie_A 78 ---TFFSVSSSDL 87 (322)
T ss_dssp ---EEEEEEHHHH
T ss_pred ---CEEEEchHHH
Confidence 5666765443
No 149
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.48 E-value=0.00011 Score=66.87 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
..+|.|.|++||||||+++.||+++|+ .++|.|.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~-------~~~D~~~~ 40 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI-------PLYSKELL 40 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC-------CEECHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc-------CEECHHHH
Confidence 348999999999999999999999977 68885543
No 150
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.46 E-value=0.00047 Score=65.07 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.-+-+.|+|||||||+++.|++.+++ .+|++|+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~-------~~is~gd 41 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI-------PQISTGD 41 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-------CEECHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC-------CeeechH
Confidence 34568899999999999999999965 7998754
No 151
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.46 E-value=0.00047 Score=64.16 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=29.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-..|-|+|.+||||||+++.|++ +|+ .+||+|.+-
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~-------~vidaD~ia 43 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGA-------SLVDTDLIA 43 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTC-------EEEEHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCC-------cEEECcHHH
Confidence 34788999999999999999988 755 899988654
No 152
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.44 E-value=4.9e-05 Score=72.08 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=31.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
...|+|.|+|||||||+++.|+..+|| .++|.|.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~-------~~~d~d~~~ 83 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY-------TFFDCDTLI 83 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC-------cEEeCcHHH
Confidence 457999999999999999999999976 799987654
No 153
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.44 E-value=5.7e-05 Score=70.61 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=48.0
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc
Q 015774 160 AATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS 239 (400)
Q Consensus 160 ~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~ 239 (400)
+.|||..|+.+++...+...+..+++. ...|. +++.|+||+||||+++.+++.+..+
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~----------------------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER----------------------KNIPH-LLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT----------------------TCCCC-EEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC----------------------CCCCe-EEEECcCCcCHHHHHHHHHHHhcCC
Confidence 458999999999888766655444322 23344 8999999999999999999986211
Q ss_pred CCCCCeEEEeCCcc
Q 015774 240 GAATNAVVVEADAF 253 (400)
Q Consensus 240 ~~~~~avvIdaDef 253 (400)
......+.+++.+.
T Consensus 66 ~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 66 NWRDNFIEMNASDE 79 (319)
T ss_dssp CHHHHCEEEETTST
T ss_pred cccCCeEEEeCccc
Confidence 00113456665443
No 154
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=9.6e-05 Score=69.36 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=47.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
+.+|+++...+.++..+..++..+.. ..+...+. -..|.-++|.|+||+||||+++.|+..++ .
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~---------~~~l~~~~--~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~ 99 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEAR-----V 99 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHC---------HHHHHHTT--CCCCCEEEEECCTTSSHHHHHHHHHHHTT-----C
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHC---------HHHHHHcC--CCCCCeEEEECCCcChHHHHHHHHHHHcC-----C
Confidence 45788888888777777777664321 01111111 12233389999999999999999999874 3
Q ss_pred CeEEEeCCc
Q 015774 244 NAVVVEADA 252 (400)
Q Consensus 244 ~avvIdaDe 252 (400)
+.+.+++.+
T Consensus 100 ~~i~~~~~~ 108 (278)
T 1iy2_A 100 PFITASGSD 108 (278)
T ss_dssp CEEEEEHHH
T ss_pred CEEEecHHH
Confidence 667776543
No 155
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.42 E-value=0.00082 Score=62.12 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=50.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCC-CeEEEe-CCccccchHHHHHHhcCC---CCChhhHhHHHHHH-HHHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT-NAVVVE-ADAFKETDVIYRALSSKG---HHDDMLQTAELVHQ-SSTD 285 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~-~avvId-aDefRe~D~irk~L~~~G---~~~d~~~aa~~v~~-~~~~ 285 (400)
+.+|++.|++||||||.++.|++.+. ..+. .+++.. +..-.-...+++.+.... ...-...+....+- .-..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~ 80 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ 80 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence 57899999999999999999999983 2332 333222 111000122334443211 01101111111111 1133
Q ss_pred HHHHHHHHHHhCCCcEEEEC
Q 015774 286 AASSLLVTALNEGRDVIMDG 305 (400)
Q Consensus 286 ~ae~lie~AL~eG~dVIIDg 305 (400)
.....+..++++|..||.|-
T Consensus 81 ~~~~~i~paL~~g~~VI~DR 100 (213)
T 4tmk_A 81 LVETVIKPALANGTWVIGDR 100 (213)
T ss_dssp HHHHTHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEcC
Confidence 44557888999999999993
No 156
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.42 E-value=0.00017 Score=74.57 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=53.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
.+|+++.+...++..+.++++.++. ......+. .+.|.-++|.|+||+||||+++.++.+.+. .
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~---------~~~~~~~g--~~~p~gvLL~GppGtGKT~Laraia~~~~~-----~ 76 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKD---------PSKFNRIG--ARMPKGILLVGPPGTGKTLLARAVAGEANV-----P 76 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHC---------THHHHTTT--CCCCSEEEEECCTTSSHHHHHHHHHHHHTC-----C
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhC---------hHHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----C
Confidence 4799999999999888888775321 00111111 234556899999999999999999999853 6
Q ss_pred eEEEeCCccc
Q 015774 245 AVVVEADAFK 254 (400)
Q Consensus 245 avvIdaDefR 254 (400)
.+.+++.+|.
T Consensus 77 f~~is~~~~~ 86 (476)
T 2ce7_A 77 FFHISGSDFV 86 (476)
T ss_dssp EEEEEGGGTT
T ss_pred eeeCCHHHHH
Confidence 6778766654
No 157
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.41 E-value=0.00036 Score=73.43 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.++.+|+|.|+|||||||+++.|+..++- ..+..+.++++|.++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~-~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME-MGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT-TCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc-cCCceEEEECCcHHH
Confidence 46789999999999999999999999842 111235579988765
No 158
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.40 E-value=8.4e-05 Score=64.95 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..+++.|+||+||||+++.++..+. +..+..++.++.+++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRGYFFDTKDL 78 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCCCEEEHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeEEEEEHHHH
Confidence 366889999999999999999998872 122345667765544
No 159
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.39 E-value=0.0014 Score=59.92 Aligned_cols=88 Identities=18% Similarity=0.354 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHH-HHHHHHH
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSS-TDAASSL 290 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~-~~~ae~l 290 (400)
..|.+-|+.||||||.++.|++.+. .+.+++... ++.-.....+++.+......+ + .+....+... .......
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~---~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~-~-~~~~lLf~a~R~~~~~~~ 77 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV---KDYDVIMTREPGGVPTGEEIRKIVLEGNDMD-I-RTEAMLFAASRREHLVLK 77 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT---TTSCEEEEESSTTCHHHHHHHHHHHSSCCCC-H-HHHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH---CCCCEEEeeCCCCChHHHHHHHHHhcccCCC-H-HHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999982 234444432 222111223444443321111 1 2222222211 2234557
Q ss_pred HHHHHhCCCcEEEEC
Q 015774 291 LVTALNEGRDVIMDG 305 (400)
Q Consensus 291 ie~AL~eG~dVIIDg 305 (400)
+..++++|..||.|-
T Consensus 78 i~p~l~~g~~Vi~DR 92 (205)
T 4hlc_A 78 VIPALKEGKVVLCDR 92 (205)
T ss_dssp HHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCEEEecC
Confidence 788999999999994
No 160
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.39 E-value=0.00079 Score=62.54 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=49.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CC-ccccchHHHHHHhcCC-CCChhhHhHHHHHHHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-AD-AFKETDVIYRALSSKG-HHDDMLQTAELVHQSSTDAA 287 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aD-efRe~D~irk~L~~~G-~~~d~~~aa~~v~~~~~~~a 287 (400)
.+.+|++.|++||||||+++.|++.++. .+.++. ++ .-.--..+++.+.... ..+ ..+....+...-...
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-----~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~--~~~~~llf~a~R~~~ 76 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP-----NCKLLKFPERSTRIGGLINEYLTDDSFQLS--DQAIHLLFSANRWEI 76 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS-----SEEEEESSCTTSHHHHHHHHHHHCTTSCCC--HHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc-----cceEEEecCCCChHHHHHHHHHHhcccCCC--HHHHHHHHHHHHHHH
Confidence 5779999999999999999999999942 233322 21 0000011334443321 111 122222222221112
Q ss_pred HHHHHHHHhCCCcEEEEC
Q 015774 288 SSLLVTALNEGRDVIMDG 305 (400)
Q Consensus 288 e~lie~AL~eG~dVIIDg 305 (400)
...+..++++|..||.|-
T Consensus 77 ~~~I~paL~~g~~VI~DR 94 (216)
T 3tmk_A 77 VDKIKKDLLEGKNIVMDR 94 (216)
T ss_dssp HHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHcCCEEEEec
Confidence 246778999999999994
No 161
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.38 E-value=0.0008 Score=61.05 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=50.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe-CCccccchHHHHHHhcCCCCChhhHhHHHHHHHHHHHHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE-ADAFKETDVIYRALSSKGHHDDMLQTAELVHQSSTDAASSLLV 292 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId-aDefRe~D~irk~L~~~G~~~d~~~aa~~v~~~~~~~ae~lie 292 (400)
+|.+-|+-||||||.++.|++.+ ...+.++++.. ++.-.....+++.+... ... + .+....+..........+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L--~~~g~~v~~treP~~t~~~~~ir~~l~~~-~~~-~-~~~~ll~~a~r~~~~~~I~ 76 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL--EKRGKKVILKREPGGTETGEKIRKILLEE-EVT-P-KAELFLFLASRNLLVTEIK 76 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCSSHHHHHHHHHHHHS-CCC-H-HHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCCCCcHHHHHHHHhhcc-cCC-h-HHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999988 44455655542 21111122333434332 111 1 1112222222222334578
Q ss_pred HHHhCCCcEEEEC
Q 015774 293 TALNEGRDVIMDG 305 (400)
Q Consensus 293 ~AL~eG~dVIIDg 305 (400)
.++++|..||.|-
T Consensus 77 ~~L~~g~~Vi~DR 89 (197)
T 3hjn_A 77 QYLSEGYAVLLDR 89 (197)
T ss_dssp HHHTTTCEEEEES
T ss_pred HHHHCCCeEEecc
Confidence 8999999999994
No 162
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.36 E-value=3.3e-05 Score=71.52 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=47.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCC
Q 015774 164 KQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAAT 243 (400)
Q Consensus 164 ~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~ 243 (400)
+.+|+++++...++..+..+++.+.. ......+. .+.|.-+++.|+||+||||+|+.++..++.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~---------~~~~~~~~--~~~~~~vll~G~~GtGKT~la~~la~~~~~----- 70 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKY---------PERYANLG--AKIPKGVLLVGPPGTGKTLLAKAVAGEAHV----- 70 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHC---------HHHHHHHS--CCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-----
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHC---------hHHHHHCC--CCCCceEEEECCCCCcHHHHHHHHHHHhCC-----
Confidence 35677788877777777776664211 00000011 233444889999999999999999999853
Q ss_pred CeEEEeCCcc
Q 015774 244 NAVVVEADAF 253 (400)
Q Consensus 244 ~avvIdaDef 253 (400)
..+.++..++
T Consensus 71 ~~~~v~~~~~ 80 (268)
T 2r62_A 71 PFFSMGGSSF 80 (268)
T ss_dssp CCCCCCSCTT
T ss_pred CEEEechHHH
Confidence 4555655544
No 163
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.35 E-value=0.00064 Score=63.74 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=50.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774 168 EKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV 247 (400)
Q Consensus 168 ~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv 247 (400)
+.+.+...+...+...+.....-. ..+.+++..+++.|+||+||||+|+.+++.+.. .+...+.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~--------------~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~ 80 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL--------------KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIR 80 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC--------------SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC--------------CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEE
Confidence 456677777777777776632211 111334568999999999999999999998732 2345788
Q ss_pred EeCCccccc
Q 015774 248 VEADAFKET 256 (400)
Q Consensus 248 IdaDefRe~ 256 (400)
++...+...
T Consensus 81 ~~~~~~~~~ 89 (311)
T 4fcw_A 81 IDMTEYMEK 89 (311)
T ss_dssp EEGGGCCST
T ss_pred eeccccccc
Confidence 888777643
No 164
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.33 E-value=9.9e-05 Score=70.59 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=33.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+.|..+|+.|+||+|||++|+.+++.++. ..+.++..++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~-----~~i~v~~~~l 72 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI-----NPIMMSAGEL 72 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTC-----CCEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeHHHh
Confidence 467889999999999999999999999964 7788875444
No 165
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.32 E-value=0.00012 Score=64.47 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=24.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.++.+|.|.|+|||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 357799999999999999999999876
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.31 E-value=0.00018 Score=64.82 Aligned_cols=43 Identities=28% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+.++.|.|+|||||||+++.|+..+.- .+.....|.-|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~--~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA--QGLPAEVVPMDGFH 62 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH--TTCCEEEEESGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh--cCCceEEEecCCCc
Confidence 56889999999999999999999998731 12245666666654
No 167
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.30 E-value=0.00011 Score=74.66 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=51.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC
Q 015774 162 TRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA 241 (400)
Q Consensus 162 ~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~ 241 (400)
+.+.+|+++.+...+++.+...+..- +.. ..+.. .....|.-+||.|+||+|||++|+.++..+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p--~~~------~~~~~---~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---- 192 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILP--IKF------PHLFT---GKRTPWRGILLFGPPGTGKSYLAKAVATEAN---- 192 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHH--HHC------TTTTS---GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHH--hhC------HHHhh---ccCCCCceEEEECCCCCCHHHHHHHHHHHcC----
Confidence 45678999999888888887776531 110 01110 1124567899999999999999999999972
Q ss_pred CCCeEEEeCCccc
Q 015774 242 ATNAVVVEADAFK 254 (400)
Q Consensus 242 ~~~avvIdaDefR 254 (400)
+.+.+.+++.++.
T Consensus 193 ~~~~~~v~~~~l~ 205 (444)
T 2zan_A 193 NSTFFSISSSDLV 205 (444)
T ss_dssp SSEEEEECCC---
T ss_pred CCCEEEEeHHHHH
Confidence 1355667765543
No 168
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.30 E-value=0.00024 Score=68.43 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=36.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
...+.+|.|.|++||||||+++.|+..++-....+.+.+|+.|.+..
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence 35788999999999999999999999763001234578889888763
No 169
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.29 E-value=0.0005 Score=66.35 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=38.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCccccchHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAFKETDVIYRAL 263 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDefRe~D~irk~L 263 (400)
...|.+|.|+|++||||||+++.|+..++-.+...+++.+ +.|.|--....+..+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 4578999999999999999999999988421000234555 999987444444433
No 170
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.29 E-value=0.00036 Score=72.53 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=54.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
.+.+|+++.+...++..+.+++..++. ......+. .+.|.-++|.|+||+||||+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~---------~~~~~~lg--~~ip~GvLL~GppGtGKTtLaraIa~~~~----- 89 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMG--ARIPKGVLLVGPPGVGKTHLARAVAGEAR----- 89 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHC---------GGGTTTTS--CCCCSEEEEECSSSSSHHHHHHHHHHHTT-----
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhc---------hhhhhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHhC-----
Confidence 356899999999999888888776321 11111111 23344599999999999999999999874
Q ss_pred CCeEEEeCCccc
Q 015774 243 TNAVVVEADAFK 254 (400)
Q Consensus 243 ~~avvIdaDefR 254 (400)
.+.+.+++.+|.
T Consensus 90 ~~~i~i~g~~~~ 101 (499)
T 2dhr_A 90 VPFITASGSDFV 101 (499)
T ss_dssp CCEEEEEGGGGT
T ss_pred CCEEEEehhHHH
Confidence 367888876664
No 171
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.28 E-value=0.00021 Score=68.83 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=51.5
Q ss_pred HHhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 160 AATRKQR-FEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 160 ~~~r~~r-f~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
+.+|+.. |+.+++.+..++.+..+...+.. ....+..+|+.|+||+||||+|+.+++.++.
T Consensus 35 ~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~------------------~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 35 DALEPRQASQGMVGQLAARRAAGVVLEMIRE------------------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTSCBCSEETTEESCHHHHHHHHHHHHHHHT------------------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred cccCcCcchhhccChHHHHHHHHHHHHHHHc------------------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3467766 99999999988888777665221 1223578999999999999999999999853
Q ss_pred cCCCCCeEEEeCC
Q 015774 239 SGAATNAVVVEAD 251 (400)
Q Consensus 239 ~~~~~~avvIdaD 251 (400)
....+.++..
T Consensus 97 ---~~~~~~~~~~ 106 (368)
T 3uk6_A 97 ---DTPFTAIAGS 106 (368)
T ss_dssp ---SCCEEEEEGG
T ss_pred ---cCCcccccch
Confidence 1234455543
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=0.00015 Score=65.51 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+++.+|+|.|||||||||+++.|+..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 467899999999999999999999987
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.27 E-value=0.00035 Score=71.34 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=50.0
Q ss_pred HHHHhhhhhhhhhhhhhHHH---HHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774 158 IMAATRKQRFEKVTKDLKMK---RVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMK 234 (400)
Q Consensus 158 ~~~~~r~~rf~~v~~~~~vk---r~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~ 234 (400)
..+.+||+.|+.+++...+. ..+...++. . .+..+++.|+||+||||+|+.|++
T Consensus 16 la~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~----------------------~-~~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEA----------------------G-HLHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp HHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH----------------------T-CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc----------------------C-CCcEEEEECCCCCcHHHHHHHHHH
Confidence 45779999999999988777 444444443 1 224689999999999999999999
Q ss_pred hccccCCCCCeEEEeCCc
Q 015774 235 ESFWSGAATNAVVVEADA 252 (400)
Q Consensus 235 ~lg~~~~~~~avvIdaDe 252 (400)
.++. ..+.+++..
T Consensus 73 ~~~~-----~f~~l~a~~ 85 (447)
T 3pvs_A 73 YANA-----DVERISAVT 85 (447)
T ss_dssp HTTC-----EEEEEETTT
T ss_pred HhCC-----CeEEEEecc
Confidence 9843 556666544
No 174
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.24 E-value=0.00045 Score=61.39 Aligned_cols=42 Identities=5% Similarity=0.087 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..+++.|+||+||||+++.+++.+.. .+..+..++.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHHHH
Confidence 4567899999999999999999998742 34567888877765
No 175
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.23 E-value=0.0002 Score=66.17 Aligned_cols=51 Identities=27% Similarity=0.357 Sum_probs=33.8
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcccc---CCCCCeEEEeCCccc
Q 015774 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWS---GAATNAVVVEADAFK 254 (400)
Q Consensus 204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~---~~~~~avvIdaDefR 254 (400)
.+...-+.+.+|-|.|++||||||+++.|+..+|.. .....+.+++.|.|-
T Consensus 17 ~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~ 70 (245)
T 2jeo_A 17 NLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY 70 (245)
T ss_dssp ------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGB
T ss_pred ceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCc
Confidence 333334678899999999999999999999987531 001234577777654
No 176
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.23 E-value=0.00055 Score=64.25 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=48.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC--CCCeE
Q 015774 169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA--ATNAV 246 (400)
Q Consensus 169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~--~~~av 246 (400)
.+++...+++.+..++..+.. .. ...... + ...+.+.-+++.|+||+||||+|+.+++.++.... ...++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~--~~~~~g----~-~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~ 103 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ER--ARQKLG----L-AHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLV 103 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HH--HHHHHT----C-CSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEE
T ss_pred HccChHHHHHHHHHHHHHHHh-HH--HHHHcC----C-CCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEE
Confidence 678888888888888775321 00 000000 0 11244557899999999999999999988743111 12456
Q ss_pred EEeCCccc
Q 015774 247 VVEADAFK 254 (400)
Q Consensus 247 vIdaDefR 254 (400)
.++++++.
T Consensus 104 ~~~~~~l~ 111 (309)
T 3syl_A 104 SVTRDDLV 111 (309)
T ss_dssp EECGGGTC
T ss_pred EEcHHHhh
Confidence 77766653
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.21 E-value=0.00037 Score=61.66 Aligned_cols=40 Identities=23% Similarity=0.310 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
|..+++.|+||+||||+++.++..+. ..+..+++++..++
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVPEL 93 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhHHH
Confidence 46789999999999999999999873 33456677765443
No 178
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.20 E-value=0.00021 Score=63.01 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.++.++.|.|+|||||||+++.|+..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 456799999999999999999999876
No 179
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.19 E-value=0.00048 Score=69.79 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=50.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCe
Q 015774 166 RFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNA 245 (400)
Q Consensus 166 rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~a 245 (400)
.|+.+++.+.++..+..+++-++. ....|.-+|+.|+||+||||+|+.+++.++. ....
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~------------------~~~~~~~iLl~GppGtGKT~la~ala~~l~~---~~~~ 93 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKS------------------KKMAGRAVLLAGPPGTGKTALALAIAQELGS---KVPF 93 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHT------------------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCT---TSCE
T ss_pred chhhccCHHHHHHHHHHHHHHHHh------------------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCC---CceE
Confidence 578899999998888888765321 1234567899999999999999999999862 1355
Q ss_pred EEEeCCccc
Q 015774 246 VVVEADAFK 254 (400)
Q Consensus 246 vvIdaDefR 254 (400)
+.+++-++.
T Consensus 94 ~~~~~~~~~ 102 (456)
T 2c9o_A 94 CPMVGSEVY 102 (456)
T ss_dssp EEEEGGGGC
T ss_pred EEEeHHHHH
Confidence 666655443
No 180
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.18 E-value=0.00027 Score=73.87 Aligned_cols=43 Identities=7% Similarity=0.202 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+++.+|++.|+|||||||+++.|++++++-..+..+.++|+|.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4678999999999999999999999996311123457899886
No 181
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.17 E-value=0.00052 Score=75.34 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=49.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC
Q 015774 165 QRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN 244 (400)
Q Consensus 165 ~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~ 244 (400)
-+|++|.+-+..+..+.+.++- -+. . ..+...+- .+.|.-|||.||||+|||++|+.+|.+++. .
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~---pl~--~---p~~f~~~g--~~~p~GILL~GPPGTGKT~LAraiA~elg~-----~ 265 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVEL---PLR--H---PALFKAIG--VKPPRGILLYGPPGTGKTLIARAVANETGA-----F 265 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHH---HHH--C---CGGGTSCC--CCCCCEEEEECCTTSCHHHHHHHHHTTTTC-----E
T ss_pred CChhhhcCHHHHHHHHHHHHHH---Hcc--C---HHHHhhcC--CCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----e
Confidence 5788888877877777777653 111 0 11111111 367889999999999999999999999864 5
Q ss_pred eEEEeC
Q 015774 245 AVVVEA 250 (400)
Q Consensus 245 avvIda 250 (400)
.+.|++
T Consensus 266 ~~~v~~ 271 (806)
T 3cf2_A 266 FFLING 271 (806)
T ss_dssp EEEEEH
T ss_pred EEEEEh
Confidence 566653
No 182
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.11 E-value=0.0007 Score=63.03 Aligned_cols=72 Identities=25% Similarity=0.332 Sum_probs=46.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774 169 KVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (400)
Q Consensus 169 ~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI 248 (400)
.+++...+++.+...+... ... ..+..++.. ...|.-+++.|+||+||||+++.+++.++. ..+.+
T Consensus 16 ~i~G~~~~~~~l~~~l~~~--~~~------~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~l~~-----~~~~i 81 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNR--WRR------MQLQEPLRH-EVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKV 81 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHH--HHT------TSSCHHHHH-HCCCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEE
T ss_pred hcCChHHHHHHHHHHHHHH--Hhh------hhhcccccc-cCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEE
Confidence 4666667766666655531 110 111111111 234567889999999999999999999853 67788
Q ss_pred eCCccc
Q 015774 249 EADAFK 254 (400)
Q Consensus 249 daDefR 254 (400)
+..++.
T Consensus 82 ~~~~~~ 87 (310)
T 1ofh_A 82 EATKFT 87 (310)
T ss_dssp EGGGGS
T ss_pred cchhcc
Confidence 877664
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00029 Score=62.04 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.++.|.|+|||||||+++.|+..+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999876
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.08 E-value=0.0014 Score=62.74 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDefR 254 (400)
.+++.|+||+||||+++.++..+. .. +..++.+++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYR 85 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCC
Confidence 889999999999999999999872 12 2356777755544
No 185
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.03 E-value=0.00028 Score=62.43 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
|.++.|.|||||||||+++.|+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999876
No 186
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.01 E-value=0.00087 Score=64.47 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=24.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..|..+++.|+||+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999999876
No 187
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0021 Score=63.21 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=34.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-----CCCeEEEeCCccccchHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-----ATNAVVVEADAFKETDVIY 260 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-----~~~avvIdaDefRe~D~ir 260 (400)
...|..+++.|+||+|||++++.+++++.-... .-.++.|++-.+......|
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 356778899999999999999999999831100 1135677766655433333
No 188
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.98 E-value=0.0016 Score=63.39 Aligned_cols=71 Identities=17% Similarity=0.118 Sum_probs=43.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 170 VTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 170 v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
+++...+++.+...+.....-.. ...... .....|.-+++.|+||+||||+|+.|++.++. ..+.++
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~------~~~~~~--~~~~~~~~vll~GppGtGKT~la~~ia~~~~~-----~~~~~~ 83 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLR------NGDTSN--GVELGKSNILLIGPTGSGKTLLAETLARLLDV-----PFTMAD 83 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHH------TTSCSS--SCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHhhhc------cccccc--cccCCCCeEEEECCCCCCHHHHHHHHHHHcCC-----CEEEec
Confidence 56677777777666653222111 000000 00234556899999999999999999999853 566676
Q ss_pred CCcc
Q 015774 250 ADAF 253 (400)
Q Consensus 250 aDef 253 (400)
.-++
T Consensus 84 ~~~l 87 (363)
T 3hws_A 84 ATTL 87 (363)
T ss_dssp HHHH
T ss_pred hHHh
Confidence 5443
No 189
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.96 E-value=0.0011 Score=61.36 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.-+++.|+||+|||++|+.+++.++ ..+...+.++...+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN 69 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGGSC
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCCCC
Confidence 3578899999999999999999873 233467888877764
No 190
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.96 E-value=0.0023 Score=62.65 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+..+++.|.||+||||+...|+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356688999999999999999998754
No 191
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.96 E-value=0.00044 Score=61.32 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...++++.|+|||||||++..++... ...+.++.+++.+.-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG--LRDGDPCIYVTTEES 62 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH--HHHTCCEEEEESSSC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH--HHCCCeEEEEEcccC
Confidence 356799999999999999999999664 123457788887763
No 192
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.00062 Score=61.27 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...++++.|+|||||||++..++... ...+.++++++.+.-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEEH 62 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 456799999999999999999887764 223567888988764
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.89 E-value=0.0015 Score=64.02 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
...+.+|.++|.||+||||++..|+..+ ...+..+.+++.|-
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l--~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHL--IERGHRVAVLAVDP 117 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEEEC-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH--HhCCCceEEEecCC
Confidence 3456788999999999999999999887 34567888999884
No 194
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.89 E-value=0.00068 Score=58.78 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=33.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
....+++.|+||+||||+++.++..+. ..+...+.++..++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDAASMPL 77 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEETTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcHHHhhH
Confidence 345788999999999999999999872 2334578888777653
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.87 E-value=0.0014 Score=60.06 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
...+.++++.|.+|+||||++..|+..+ . .+..+.+|+.|-
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l--~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL--E-DNYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH--T-TTSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH--H-CCCeEEEEeCCC
Confidence 4567899999999999999999999887 3 566888999884
No 196
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.87 E-value=0.00033 Score=65.26 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+|.+|++.|++||||||+++.|++.+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4678999999999999999999999998
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.86 E-value=0.0018 Score=55.07 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-+++.|+||+|||++|+.++.... ..+...+ ++...+.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTPD 63 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEECCTT
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECCCCC
Confidence 368999999999999999998762 2334556 7765543
No 198
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.85 E-value=0.00027 Score=62.66 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
+|.|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999884
No 199
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.84 E-value=0.0015 Score=62.30 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=46.1
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..++.+|+.-++.+++...+++.+...+.. .. -+++.|+||+|||++++.+++.+
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~-----------------------~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICT-----------------------GG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHH-----------------------TC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHc-----------------------CC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 457788998889898887766544332221 12 47889999999999999999988
Q ss_pred cccCCCCCeEEEeC
Q 015774 237 FWSGAATNAVVVEA 250 (400)
Q Consensus 237 g~~~~~~~avvIda 250 (400)
+. ....++.
T Consensus 71 ~~-----~~~~i~~ 79 (331)
T 2r44_A 71 DL-----DFHRIQF 79 (331)
T ss_dssp TC-----CEEEEEC
T ss_pred CC-----CeEEEec
Confidence 53 4555553
No 200
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.80 E-value=0.0019 Score=66.45 Aligned_cols=71 Identities=23% Similarity=0.339 Sum_probs=46.4
Q ss_pred hhhhhhHHHHHHHHHHHH-HHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEE
Q 015774 169 KVTKDLKMKRVFSTLVEE-MKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVV 247 (400)
Q Consensus 169 ~v~~~~~vkr~~~~liee-~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avv 247 (400)
.|++.+.+++.+...+.. |+... +...+. ....|.-|+|.|+||+||||+++.||..+++ ..+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~---------~~~~~~-~~~~~~~iLl~GppGtGKT~lar~lA~~l~~-----~~~~ 80 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQ---------LQEPLR-HEVTPKNILMIGPTGVGKTEIARRLAKLANA-----PFIK 80 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHH---------SCTTTT-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhc---------cccccc-cccCCceEEEEcCCCCCHHHHHHHHHHHcCC-----Ccee
Confidence 467777777777666643 22221 111111 0124556899999999999999999999964 6677
Q ss_pred EeCCccc
Q 015774 248 VEADAFK 254 (400)
Q Consensus 248 IdaDefR 254 (400)
+++..+.
T Consensus 81 v~~~~~~ 87 (444)
T 1g41_A 81 VEATKFT 87 (444)
T ss_dssp EEGGGGC
T ss_pred ecchhhc
Confidence 7765554
No 201
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00077 Score=61.85 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.|.+|++.|++||||||+++.|++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999999998
No 202
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.78 E-value=0.0012 Score=58.36 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+...++++.|+|||||||++..++... +.++++++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~-----~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLS-----GKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHH-----CSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEEECCC
Confidence 456799999999999999999999832 45788898876
No 203
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.77 E-value=0.0016 Score=67.33 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=53.7
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
..++.+|+.+.+....++.+.++++....- ..+...+ ....|.-+||.|+||+|||++|+.++.+++.
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~--------~~~~~~~--g~~~~~~vLL~GppGtGKT~lAraia~~~~~-- 264 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRH--------PALFKAI--GVKPPRGILLYGPPGTGKTLIARAVANETGA-- 264 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHC--------HHHHHHH--TCCCCCEEEEECSTTSSHHHHHHHHHHHCSS--
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhC--------HHHHHhc--CCCCCCcEEEECcCCCCHHHHHHHHHHHhCC--
Confidence 456678999999988888888887742110 0000111 0245667999999999999999999999843
Q ss_pred CCCCeEEEeCCcc
Q 015774 241 AATNAVVVEADAF 253 (400)
Q Consensus 241 ~~~~avvIdaDef 253 (400)
..+.+++.++
T Consensus 265 ---~fv~vn~~~l 274 (489)
T 3hu3_A 265 ---FFFLINGPEI 274 (489)
T ss_dssp ---EEEEEEHHHH
T ss_pred ---CEEEEEchHh
Confidence 5667765443
No 204
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.76 E-value=0.0014 Score=63.73 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=34.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC-CCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA-TNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~-~~avvIdaDefR 254 (400)
.+.+.+|.|.|+|||||||+++.|+..+.- ..| ..+.+|.-|.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~~~v~~v~qd~~~ 132 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHHPRVDLVTTDGFL 132 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc-cCCCCeEEEEecCccC
Confidence 467899999999999999999999987631 111 346677767654
No 205
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.75 E-value=0.0013 Score=61.18 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
..|.-+++.|+||+||||+|+.+++.++. ..+.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-----~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-----PFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC-----SEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEe
Confidence 46678999999999999999999999854 555554
No 206
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.74 E-value=0.00082 Score=60.61 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++..++.+.|+|||||||+++.|+...- ...+.+.++++.+...
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~-~~~~~~~~~~~~~~~~ 71 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEERA 71 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCCCeEEEEEccCCH
Confidence 5678999999999999999999883210 0113466777766543
No 207
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.74 E-value=0.0006 Score=61.26 Aligned_cols=26 Identities=42% Similarity=0.723 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++.++.|.|+|||||||+++.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35678999999999999999999865
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.74 E-value=0.00099 Score=63.57 Aligned_cols=42 Identities=21% Similarity=0.297 Sum_probs=32.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..+++.|+||+||||+++.+++.+. ..+..++.++++++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHHHHH
Confidence 345678999999999999999999872 123467888876653
No 209
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.71 E-value=0.00048 Score=62.71 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=18.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHH-Hhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIM-KES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA-~~l 236 (400)
-+++.++.|.|+|||||||+++.|+ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3467799999999999999999999 654
No 210
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.66 E-value=0.0018 Score=57.59 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDe 252 (400)
+...++.|.|+|||||||+++.|+...-.+ ....+.+.++.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 467899999999999999999998743110 0123467788765
No 211
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.0017 Score=61.87 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDefRe 255 (400)
..|..+++.|+||+||||+++.+++.+... +.+..++.+++.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 91 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRET 91 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCC
Confidence 456688999999999999999999887100 0012556777665543
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.65 E-value=0.0014 Score=71.64 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=53.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCC
Q 015774 163 RKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAA 242 (400)
Q Consensus 163 r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~ 242 (400)
.+-.|+.+.+....++.+.++++-... . ..+...+. -..|.-++|.|+||+||||+++.|+..++.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~--~------~~~~~~l~--i~~~~~vLL~Gp~GtGKTtLarala~~l~~---- 264 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLR--H------PALFKAIG--VKPPRGILLYGPPGTGKTLIARAVANETGA---- 264 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHH--C------GGGGTSSC--CCCCCEEEECSCTTSSHHHHHHHHHHTTTC----
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhh--C------HHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHcCC----
Confidence 456889999988888888888774211 0 11222221 356778999999999999999999999843
Q ss_pred CCeEEEeCCcc
Q 015774 243 TNAVVVEADAF 253 (400)
Q Consensus 243 ~~avvIdaDef 253 (400)
..+.+++.++
T Consensus 265 -~~i~v~~~~l 274 (806)
T 1ypw_A 265 -FFFLINGPEI 274 (806)
T ss_dssp -EEEEEEHHHH
T ss_pred -cEEEEEchHh
Confidence 5566765443
No 213
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.63 E-value=0.0015 Score=58.78 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=28.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
..++.++|++||||||++..|+..+ ...+..+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l--~~~g~~v~~ik~ 40 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA--VREGWRVGTVKH 40 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh--HhcCCeeeEEEe
Confidence 3478899999999999999999887 233445556653
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.63 E-value=0.0017 Score=58.31 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=32.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe 252 (400)
+...++.+.|+|||||||++..++...-.+. .+.++++++.+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4667999999999999999999998521111 235778898776
No 215
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.58 E-value=0.0012 Score=60.97 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+...++.|.|||||||||+.+.|+..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4667899999999999999999999876
No 216
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.58 E-value=0.0018 Score=60.45 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+..|++.|++||||||+|.+|+++.+ .+|+.|...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~--------~iIsdDs~~ 68 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH--------RLIADDRVD 68 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC--------EEEESSEEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC--------eEEecchhh
Confidence 3567899999999999999999999862 577766544
No 217
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.58 E-value=0.0013 Score=59.10 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++..++.|.|+|||||||+++.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 567799999999999999999999876
No 218
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.54 E-value=0.013 Score=61.05 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++..+++.|+||+||||+++.|+..++ .....++.+.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~ 145 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVR 145 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccc
Confidence 466899999999999999999999984 355666655543
No 219
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.50 E-value=0.002 Score=62.86 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.-+++.|+||+||||+|+.+++.++. ..+.++...+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~-----~~~~~~~~~~~ 109 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDI-----PIAISDATSLT 109 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGCC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCC-----CEEEecchhhh
Confidence 4456899999999999999999999853 56777765543
No 220
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.49 E-value=0.0013 Score=60.07 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.++.|.|++||||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467789999999999999999999876
No 221
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.45 E-value=0.0015 Score=58.26 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.+.|.|+|||||||+++.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998874
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.44 E-value=0.0021 Score=60.97 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
++..++++.|++||||||+.+.|+..+.- ...+.+.++.|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g~~i 64 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPI 64 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEESSC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcCCcc
Confidence 45679999999999999999999987621 1124466665554
No 223
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.41 E-value=0.0041 Score=60.02 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+.-+++.|+||+|||+++..++..+.- ..+..+++++..++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEHHHH
Confidence 457889999999999999999998730 23456677775443
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.40 E-value=0.0026 Score=59.94 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
....+++|.|+|||||||++..|+...- +..+..+.+++.+.
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEE 74 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcC
Confidence 5677999999999999999999998762 12233667777654
No 225
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.38 E-value=0.0015 Score=63.87 Aligned_cols=43 Identities=26% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+.+|.+.|+||+||||++..|+..+ ...+..+.+++.|-..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~--~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL--IREGLKVAVIAVDPSS 96 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC-
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeecCCc
Confidence 466788889999999999999998876 2335577888877654
No 226
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.37 E-value=0.0033 Score=66.02 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=45.9
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccC
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSG 240 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~ 240 (400)
.+|++.|+.+.+...+.+.+...++. ...+++.|+||+||||+++.|+..+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~-------------------------g~~vll~Gp~GtGKTtlar~ia~~l~~-- 86 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ-------------------------KRHVLLIGEPGTGKSMLGQAMAELLPT-- 86 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT-------------------------TCCEEEECCTTSSHHHHHHHHHHTSCC--
T ss_pred cccccccceEECchhhHhhccccccC-------------------------CCEEEEEeCCCCCHHHHHHHHhccCCc--
Confidence 57889999999988776554443332 236799999999999999999998843
Q ss_pred CCCCeEEEeCCc
Q 015774 241 AATNAVVVEADA 252 (400)
Q Consensus 241 ~~~~avvIdaDe 252 (400)
...+.+.+..+.
T Consensus 87 ~~~~~~~~~~~~ 98 (604)
T 3k1j_A 87 ETLEDILVFPNP 98 (604)
T ss_dssp SSCEEEEEECCT
T ss_pred ccCCeEEEeCCc
Confidence 122334554443
No 227
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.35 E-value=0.0025 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++..++.+.|++||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 567799999999999999999999987
No 228
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.35 E-value=0.0026 Score=64.87 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=40.1
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+.+|+.+|+.+++.....+.+...+.. ..+.-+++.|+||+||||+++.|+..+
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r-----------------------~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-----------------------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-----------------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhc-----------------------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 356678899999998876554433322211 112234789999999999999999986
No 229
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.34 E-value=0.0022 Score=58.32 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+|++.|++||||||+|..|+.. +. .+++|++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~-----~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-AP-----QVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CS-----SEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CC-----CeEEEecCC
Confidence 4799999999999999999976 43 677888744
No 230
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.0025 Score=60.59 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=30.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDef 253 (400)
..+..+++.|+||+||||+++.+++.+.-... +..++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 45678899999999999999999997711000 125567775433
No 231
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.32 E-value=0.0024 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+++++|+|||||||++..++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999998888775
No 232
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.29 E-value=0.0029 Score=63.12 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=34.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+...+++|.|+|||||||++..++... ...+..+++|+++.-.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHAL 101 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccccc
Confidence 457899999999999999999999876 2345578899987643
No 233
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.10 E-value=0.0044 Score=57.84 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV 248 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI 248 (400)
.+..+++++|+||+||||.+..++.++ .+.+..+.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEE
Confidence 456799999999999999999999887 3445577776
No 234
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.04 E-value=0.0064 Score=58.84 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=35.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.+++++|-.|+||||++..||..+ ...+..+.+||+|-
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM--ARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH--HHCCCcEEEEeCCC
Confidence 6899999999999999999999887 55678999999996
No 235
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.04 E-value=0.004 Score=61.55 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=34.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...++++.|+|||||||++..++... ...+..+++++++.-
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHA 100 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCC
Confidence 356799999999999999999998765 223567899998863
No 236
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.03 E-value=0.0053 Score=62.14 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+..+++.|+||+||||+++.++..+.-...+..++.+++.+|.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5568999999999999999999987211113466788877663
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.01 E-value=0.0049 Score=67.30 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=39.0
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+.+|+.+|+.+++.+...+.+.. ++. .+.+.-+++.|+||+||||+++.++..+
T Consensus 159 ~l~~~~r~~~ld~viGr~~~i~~l~~-------~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 159 DLTRLAAEGKLDPVIGRDEEIRRVIQ-------ILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHH-------HHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCcccCCcHHHHHHHHH-------HHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35677899999998876633222222 221 1122235889999999999999999987
No 238
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.00 E-value=0.0031 Score=57.64 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=24.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+++.+|.+.|++||||||+++.|+..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 467889999999999999999999876
No 239
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.99 E-value=0.0047 Score=57.56 Aligned_cols=45 Identities=13% Similarity=0.274 Sum_probs=32.8
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
.+...-++..++.+.|+|||||||+.+.|+..+.. ..+.+.+++-
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~ 64 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQ 64 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEEETTE
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 33333467889999999999999999999987521 2345666653
No 240
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.99 E-value=0.0076 Score=55.05 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc-cc--CCC-CCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF-WS--GAA-TNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg-~~--~~~-~~avvIdaDefR 254 (400)
.|.+++++|+||||||+++..++...- +. ..+ ..+.+.+.|++.
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~ 51 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK 51 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc
Confidence 567999999999999999988654431 00 122 334456666554
No 241
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.98 E-value=0.019 Score=55.54 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
++-|..+++.|+||+||||+|+.+++.+..
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 456889999999999999999999999864
No 242
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.96 E-value=0.0061 Score=59.93 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
...+|.|.|+|||||||+...|...+ ...+..+.++..|-.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~--~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML--TERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh--hhcCCeEEEEeecCC
Confidence 46689999999999999999999865 223446667766644
No 243
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.93 E-value=0.0029 Score=60.16 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=36.6
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 161 ATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 161 ~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..++..|+.+++...+++.+. .. .++ ....| ++|.|+||+|||++|+.+++.++
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~---~~--~~~----------------~~~~~--vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALL---LT--AVD----------------PGIGG--VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHH---HH--HHC----------------GGGCC--EEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCchhccChHHHHHHHH---HH--hhC----------------CCCce--EEEECCCCccHHHHHHHHHHhCc
Confidence 345678999988877655321 11 111 01123 89999999999999999999873
No 244
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.93 E-value=0.0082 Score=59.06 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=36.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+.+.+++++|-.|+||||++..||..+ ...+..+++||+|-
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~l--a~~g~~vllid~D~ 54 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQL--AKVRRSVLLLSTDP 54 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH--TTSSSCEEEEECCS
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHH--HhCCCcEEEEECCC
Confidence 3456899999999999999999999988 56778999999993
No 245
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.92 E-value=0.0064 Score=56.98 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccC---------CCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG---------AATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~---------~~~~avvIdaDef 253 (400)
....+++|.|+|||||||++..++.... ++ .+..+.+++.++-
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCC
Confidence 4667999999999999999999987541 11 1245677876653
No 246
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.91 E-value=0.0037 Score=58.16 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=33.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-.+..++.+.|+|||||||+.+.|+.-+. ...+-+.+++.++.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTN 70 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcc
Confidence 46778999999999999999999997652 12355777765554
No 247
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.91 E-value=0.0061 Score=59.72 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=31.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.....++.|.|+|||||||+.+.|+..+ ...++.+.+++.|-
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~--~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL--TAAGHKVAVLAVDP 93 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh--hhCCCEEEEEEEcC
Confidence 3567899999999999999999999765 22334555555443
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.90 E-value=0.037 Score=59.15 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=32.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
..-+++.|+||+|||++|+.+++.++ .+.+.++..++.+
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYME 526 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSS
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcc
Confidence 34789999999999999999999984 3677888776653
No 249
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.89 E-value=0.0052 Score=61.05 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...++++.|+||+||||++..++... ...+..+++|+++.-
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s 102 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHA 102 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCC
Confidence 356799999999999999999998875 223557899998653
No 250
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.88 E-value=0.0056 Score=65.73 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=40.6
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+.+|+.+|+.+++.+...+.+...+.. +.+.=+|+.|+||+||||+|+.|++.+
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~-----------------------~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR-----------------------RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC-----------------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhC-----------------------CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345677888999998876655543332211 122236899999999999999999986
No 251
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.88 E-value=0.0043 Score=58.97 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=32.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-+...++.|.|+|||||||+++.|+.-+.- ..+.+.+++.++.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLLGQNLN 76 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEETTEETT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCEECC
Confidence 356789999999999999999999986621 2455777665543
No 252
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.88 E-value=0.012 Score=52.23 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..|++.|.+||||||++..|+..++- ...+.+++.|...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~---~~~~~~i~~d~~~ 69 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN---EVKIGAMLGDVVS 69 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT---TSCEEEEECSCCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc---CCeEEEEecCCCC
Confidence 3457888899999999999999988631 2456677777654
No 253
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.86 E-value=0.0073 Score=59.29 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=36.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
...+.+++++|..|+||||++..||..+ ...+..+++||+|-
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~l--A~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYL--AEKGLKVVIVSTDP 64 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHH--HHSSCCEEEEECCT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 3567899999999999999999999887 45677999999997
No 254
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.86 E-value=0.0052 Score=61.07 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++..+++++|++||||||+++.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999876
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.86 E-value=0.0061 Score=54.59 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.++.++|++||||||++..|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 478899999999999999999875
No 256
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.85 E-value=0.0081 Score=58.41 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=36.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...+++++|-.|+||||++..||..+ ...|..+.+||+|--
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~l--A~~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQM--SKVRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHH--HTSSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 456789999999999999999999988 566789999999953
No 257
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.83 E-value=0.0049 Score=61.86 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-+.+.++++.|+|||||||+++.|+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567899999999999999999999887
No 258
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.82 E-value=0.0088 Score=60.49 Aligned_cols=58 Identities=21% Similarity=0.387 Sum_probs=33.6
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 156 DFIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 156 ~~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
+--+..+||..|+..+.+.+ +++..+.+. +. ...+ .++|.|+||+||||++..++..
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~--~av~~~~~~---i~-----------------~~~~-~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQK--NAFNIVMKA---IK-----------------EKKH-HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp ---------CCSSCCCHHHH--HHHHHHHHH---HH-----------------SSSC-EEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHH--HHHHHHHHH---Hh-----------------cCCC-EEEEEeCCCCCHHHHHHHHHHH
Confidence 34578899999998765443 233333332 11 1122 8899999999999999999988
Q ss_pred c
Q 015774 236 S 236 (400)
Q Consensus 236 l 236 (400)
+
T Consensus 69 l 69 (459)
T 3upu_A 69 L 69 (459)
T ss_dssp H
T ss_pred H
Confidence 7
No 259
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.82 E-value=0.0098 Score=60.38 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+..+++++|++||||||+.+.|+..+. ...++ +++..|.+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~-I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN--SSERN-ILTVEDPI 205 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSC-EEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCE-EEEecccc
Confidence 456999999999999999999998873 22333 44444544
No 260
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.018 Score=55.67 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=32.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc-ccCCCCCeEEEeCC
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESF-WSGAATNAVVVEAD 251 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg-~~~~~~~avvIdaD 251 (400)
+..+++.|+||+||||++..+++..+ |....+++..++++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~ 58 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 58 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC
Confidence 56899999999999999999998642 23345688889876
No 261
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.81 E-value=0.0049 Score=55.31 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...+++++|.||+||||++..++.... ...+..+++++.++-
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPGVFVTLEER 70 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCEEEEESSSC
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCceeecccCC
Confidence 5677999999999999999998765421 112346778887654
No 262
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.80 E-value=0.0036 Score=57.78 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=32.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-++..++.+.|+|||||||+.+.|+.-+.. ..+-+.+++-++.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGKEVD 69 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTEECC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEECC
Confidence 356779999999999999999999976521 2355777665443
No 263
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.78 E-value=0.0076 Score=57.03 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=34.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.+.+|.++|-.|+||||++..||..+ ...+..+++||.|-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 456677777999999999999999988 45677999999995
No 264
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.76 E-value=0.0099 Score=56.12 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=33.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
...-|+++|.||+||||++-.++..+ ...|.++++++.|.-
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l--~~~G~~V~v~d~D~q 45 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQ--LRQGVRVMAGVVETH 45 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCCT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH--HHCCCCEEEEEeCCC
Confidence 34569999999999999999999887 345678889998863
No 265
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.76 E-value=0.0059 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
|-+.++.|++||||||++.+|.--++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 44899999999999999999987664
No 266
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.76 E-value=0.013 Score=64.05 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=33.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
..+++.|+||+|||++|+.|+..+. ..+...+.++..++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYME 629 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccc
Confidence 4889999999999999999999873 2344678898887764
No 267
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.75 E-value=0.0089 Score=54.34 Aligned_cols=38 Identities=21% Similarity=0.163 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
....++++.|+|||||||.+-.++.++ .+.+..+.++.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~--~~~g~kV~v~k 43 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA--KIAKQKIQVFK 43 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEE
Confidence 345799999999999999999999998 34566777663
No 268
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.75 E-value=0.0045 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++.+.|+|||||||+++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999887
No 269
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.74 E-value=0.0048 Score=57.47 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.5
Q ss_pred ccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 205 AALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 205 l~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+...-++..++.|.|++||||||+.+.|+..+
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33334677899999999999999999998875
No 270
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.73 E-value=0.0072 Score=58.41 Aligned_cols=24 Identities=42% Similarity=0.744 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+++|+|++||||||+.+.|+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 378899999999999999999764
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.72 E-value=0.012 Score=57.50 Aligned_cols=43 Identities=12% Similarity=0.221 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe 252 (400)
+...++++.|+||+||||++..++...-.+. .+.++++|+++.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5678999999999999999999998631111 345788999877
No 272
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.71 E-value=0.013 Score=54.40 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=33.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
..++.+|+++|.|||||+|++..+.+.+|. .++.+++ =.|++.+..
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~----~~~~vv~-----msD~iK~~~ 53 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA----DVCAVLR-----LSGPLKEQY 53 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT----TTEEEEC-----THHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC----CCceEEE-----ccHHHHHHH
Confidence 356789999999999999999999987742 1344554 246665544
No 273
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.70 E-value=0.0087 Score=57.85 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDe 252 (400)
+...++++.|+||+||||++..++...-.+ +.+.++++|+++.
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 456799999999999999999999764111 0145789999887
No 274
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.68 E-value=0.0086 Score=57.53 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=33.6
Q ss_pred CCCEEEEEEc-CCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGG-GMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G-~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+.+|+++| .+|+||||++..||..+ ...+..+++||+|.-+
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~r~ 145 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVI--AQSDQKVLFIDADLRR 145 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHH--HHTTCCEEEEECCTTT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHH--HhCCCcEEEEECCCCC
Confidence 3445666655 58999999999999988 4567789999999754
No 275
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.67 E-value=0.0081 Score=64.22 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=39.6
Q ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhCcCccccccccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 157 FIMAATRKQRFEKVTKDLKMKRVFSTLVEEMKAIRREGESHCTDVMVPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 157 ~~~~~~r~~rf~~v~~~~~vkr~~~~liee~~~i~~~~~~~~~~v~~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+.+|+.+|+.+++.....+. +++ ++. ...+.-+++.|+||+||||+++.|+..+
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~---l~~----~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELER---AIQ----VLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHH---HHH----HHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCccCCHHHHHH---HHH----HHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45677888999988876543322 222 221 1233456899999999999999999987
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.67 E-value=0.0057 Score=57.30 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=28.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
++ .++.+.|+|||||||+.+.|+.-+.. ..+-+.+++
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g 59 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNG 59 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC
Confidence 45 89999999999999999999987621 234466654
No 277
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.67 E-value=0.014 Score=55.97 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=31.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.-+++.|+||+|||++|+.++.... ..+...+.++...+.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLNCAALN 65 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEECSSCC
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEeCCCCC
Confidence 34578999999999999999999762 234467888877765
No 278
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.64 E-value=0.0099 Score=56.32 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=33.3
Q ss_pred CCEEEEEE-cCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMG-GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~-G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.+|+++ +.+|+||||++..||..+ ...+..+++||+|.-+
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~l--A~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAY--AQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCC
Confidence 44555555 559999999999999988 4567799999999765
No 279
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.63 E-value=0.013 Score=62.81 Aligned_cols=43 Identities=19% Similarity=0.503 Sum_probs=34.1
Q ss_pred CCE-EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 211 SPV-LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 211 ~P~-lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
.|. .+++.|+||+|||++|+.+++.+. ..+.+.+.++..++.+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYME 562 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhccc
Confidence 343 689999999999999999999872 2345778888777764
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.62 E-value=0.0056 Score=57.93 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=32.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.|.|+|||||||+.+.|+.-+.. ..+.+.+++.++
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~ 70 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNI 70 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence 467789999999999999999999977621 235567766444
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.62 E-value=0.011 Score=57.19 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+..+++++|.||+||||++..++.... .++.++++++.++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a--~~g~~vl~~slE~ 106 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS--DNDDVVNLHSLEM 106 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH--TTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEECCC
Confidence 5677999999999999999999997753 2345778888764
No 282
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.61 E-value=0.0067 Score=57.54 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=31.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.|.|+|||||||+.+.|+.....+ ...+.+.+++.++
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~i 86 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGREDYE-VTGGTVEFKGKDL 86 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEEG
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEEC
Confidence 4677899999999999999999999852100 0124566766544
No 283
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.59 E-value=0.014 Score=52.53 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=33.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCC-CCCeEEEeCCcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGA-ATNAVVVEADAF 253 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~-~~~avvIdaDef 253 (400)
..+.+.++-.|+||||++..||..+ ... +..+.+||.|--
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~l--a~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFAL--SQEPDIHVLAVDISLP 45 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHH--TTSTTCCEEEEECCTT
T ss_pred eEEEEECCCCCcchHHHHHHHHHHH--HhCcCCCEEEEECCCC
Confidence 4566777889999999999999998 555 789999999965
No 284
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.59 E-value=0.0088 Score=55.99 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+++.||||+||||+|..|++.+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999987
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.57 E-value=0.0051 Score=57.31 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.+.|+|||||||+.+.|+.-+.. ..+.+.+++-.+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 70 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDI 70 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 356779999999999999999999987521 234566665444
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.57 E-value=0.006 Score=57.14 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=31.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHh--ccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKE--SFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~--lg~~~~~~~avvIdaDefR 254 (400)
-++..++.|.|+|||||||+.+.|+.. +.- ..+.+.+++-++.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENIL 70 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECC
Confidence 356779999999999999999999985 210 1245777665543
No 287
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.55 E-value=0.0061 Score=57.97 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.|.|+|||||||+.+.|+..+.. ..+-+.+++-++
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i 88 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGINL 88 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEES
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence 467789999999999999999999977621 234566765443
No 288
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.53 E-value=0.0057 Score=51.88 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+++.|+||+|||++|+.++...+ ..+.++..+
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~ 61 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNGT------PWVSPARVE 61 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTTS------CEECCSSTT
T ss_pred EEEECCCCccHHHHHHHHHHhCC------CeEEechhh
Confidence 68899999999999999988751 445565443
No 289
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.53 E-value=0.0087 Score=53.63 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=31.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
|.++|-.|+||||++..||..+ ...+..+.+||.|-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIM--ASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHH--TTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCC
Confidence 3448999999999999999998 56678999999997
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.52 E-value=0.0054 Score=56.72 Aligned_cols=28 Identities=39% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-++..++.+.|++||||||+.+.|+..+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999999876
No 291
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.52 E-value=0.0054 Score=57.71 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=31.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.+.|+|||||||+.+.|+.-+.. ..+.+.+++-++
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~ 71 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDI 71 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 356789999999999999999999977621 234566765444
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.51 E-value=0.0065 Score=57.41 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=32.3
Q ss_pred cCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 208 SERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 208 ~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.-++..++.|.|++||||||+.+.|+..+. . .+.+.+++-++
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i 83 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNV 83 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEG
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEh
Confidence 346778999999999999999999998762 1 35577766444
No 293
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.50 E-value=0.013 Score=57.87 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=36.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~--~~~~~avvIdaDe 252 (400)
....+++++|-.|.||||++..||..+ . ..|..+.+||+|-
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l--A~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM--ALSQPNKQFLLISTDP 58 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECCC
Confidence 346799999999999999999999888 5 6678999999997
No 294
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.50 E-value=0.0065 Score=57.48 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=31.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-.+..++.|.|+|||||||+.+.|+.-+.. ..+.+.+++-.+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~ 79 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNV 79 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEET
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 467789999999999999999999977521 234566665443
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.50 E-value=0.0085 Score=59.50 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.-+++++|++||||||+.+.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34599999999999999999998876
No 296
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.49 E-value=0.011 Score=57.80 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
...+.|.|+|||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999999999999873
No 297
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.48 E-value=0.013 Score=53.67 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
...-+++.|+||+||||++.+|.++
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4568999999999999999999986
No 298
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.48 E-value=0.014 Score=55.01 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
.+|.++|.+||||||+++.|...+|+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~ 27 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSA 27 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999998865
No 299
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.46 E-value=0.0092 Score=59.53 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+...+++|.|+||+||||++..++... ...+..+++|+++.-
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHA 113 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCC
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCC
Confidence 356689999999999999999998875 223568899998864
No 300
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.45 E-value=0.011 Score=61.71 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=36.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
...+.+++++|.+|+||||++..||..+ ...|..+++||+|-
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~l--A~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRL--AEQGKRVLLVSTDP 46 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCT
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHH--HHCCCcEEEEECCC
Confidence 3456789999999999999999999987 45677899999994
No 301
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.45 E-value=0.0059 Score=57.27 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=32.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-++..++.|.|+|||||||+.+.|+.-+.. ..+.+.+++-++.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLA 74 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence 356789999999999999999999887621 2355777765443
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.45 E-value=0.0069 Score=57.32 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=25.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-....++.|.|+|||||||+.+.|+.-+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4677899999999999999999998765
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.45 E-value=0.007 Score=57.61 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=32.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.|.|+|||||||+.+.|+..+.- ..+.+.+++-++
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i 83 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPL 83 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEEG
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEc
Confidence 467789999999999999999999987621 235577766444
No 304
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.44 E-value=0.0056 Score=58.66 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=31.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-++..++.+.|+|||||||+.+.|+.-+.- ..+.+.+++.++
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i 72 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNKPI 72 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence 356789999999999999999999976521 234566766544
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.44 E-value=0.0058 Score=59.57 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=34.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
-++..++.|.|++||||||+++.|+.-+.- ..+.+.+++-+++.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~~i~~ 120 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQDISQ 120 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTEETTS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCEEccc
Confidence 366789999999999999999999887621 23557787766653
No 306
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.43 E-value=0.005 Score=56.81 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-++..++.+.|+|||||||+.+.|+..+.. ..+.+.+++.+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~ 72 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVP 72 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence 356778999999999999999999876521 23456666543
No 307
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.42 E-value=0.035 Score=49.33 Aligned_cols=39 Identities=15% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+..|++.|.+|+||||++..|+....- ......|+.|.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~---~~~~~~i~~d~ 75 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD---KYKIACIAGDV 75 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT---TCCEEEEEEET
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc---CCeEEEEECCC
Confidence 3456777799999999999999988631 13445566553
No 308
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.40 E-value=0.0098 Score=61.83 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEE-eCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVV-EADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvI-daDef 253 (400)
.+..++++|++||||||+++.|+..+. . ..+.+.| +.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~--~-~~giitied~~E~ 299 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP--P-DAKVVSIEDTREI 299 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC--T-TCCEEEEESSCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC--C-CCCEEEEcCcccc
Confidence 455799999999999999999998773 1 2344554 34434
No 309
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.40 E-value=0.0089 Score=52.32 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.+.++-.|+||||++..||..+ ...+..+.+||.|--.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTTC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCCC
Confidence 455667889999999999999988 4567789999999544
No 310
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.39 E-value=0.015 Score=57.29 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccc-cCC---CCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFW-SGA---ATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~-~~~---~~~avvIdaDef 253 (400)
+...++.|.|+|||||||++..++..... +.. ++.++.|++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 56789999999999999999999987521 111 134588887653
No 311
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.39 E-value=0.0085 Score=58.53 Aligned_cols=28 Identities=18% Similarity=0.104 Sum_probs=25.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-++..++.|.|+|||||||+++.|+.-+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3567799999999999999999999876
No 312
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.39 E-value=0.018 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFW 238 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~ 238 (400)
..|+|.|+|||||||+++.|+..+++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 46888999999999999999998865
No 313
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.38 E-value=0.015 Score=57.54 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=35.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc--CCCCCeEEEeCC
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS--GAATNAVVVEAD 251 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~--~~~~~avvIdaD 251 (400)
..+.+++++|-.|+||||++..||..+ . ..+..+++||+|
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~l--a~~~~g~~vllid~D 57 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQL--ALAQPNEQFLLISTD 57 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHH--HHHCTTSCEEEEECC
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH--HHhcCCCeEEEEECC
Confidence 456799999999999999999999887 5 567899999999
No 314
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.35 E-value=0.011 Score=58.26 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=28.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
...+++++|++||||||+++.|+..+.- ..+.+.++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie 209 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF---DQRLITIE 209 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC---CceEEEEC
Confidence 4458899999999999999999988731 34556665
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.32 E-value=0.0066 Score=55.66 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..++.+.|++||||||+++.|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458889999999999999999875
No 316
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.32 E-value=0.0068 Score=57.10 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
....++.+.|+|||||||+.+.|+..+. . . +-+.+++..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p-~-G~i~~~g~~~ 63 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS--G-K-GSIQFAGQPL 63 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC--C-E-EEEEETTEEG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC--C-C-eEEEECCEEC
Confidence 5677999999999999999999998762 1 2 4566655433
No 317
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.29 E-value=0.021 Score=53.50 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
+++|.|++|+||||+++.++++.+ ...++++...+
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~-----~~~~~~~~~~~ 66 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN-----LPYIYLDLRKF 66 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CCEEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEEchhh
Confidence 899999999999999999999873 24678886654
No 318
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.29 E-value=0.017 Score=54.77 Aligned_cols=44 Identities=25% Similarity=0.261 Sum_probs=31.0
Q ss_pred cccccCCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 204 PAALSERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 204 pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
|..++.....+.+++|+|||||||.+-.++.+. .+.+.+++++.
T Consensus 11 p~~~~~~~g~l~v~~G~MgsGKTT~lL~~~~r~--~~~g~kvli~k 54 (234)
T 2orv_A 11 PGSPSKTRGQIQVILGPMFSGKSTELMRRVRRF--QIAQYKCLVIK 54 (234)
T ss_dssp -------CCEEEEEECCTTSCHHHHHHHHHHHH--HTTTCCEEEEE
T ss_pred CCCCCCCceEEEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEe
Confidence 333334567899999999999999999998887 45666776664
No 319
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.29 E-value=0.02 Score=54.81 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=35.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+..++.+.++.+|+||||++..||..+ ...+..+++||+|.-+
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~l--A~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVI--SQTNKRVLLIDCDMRK 133 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHH--HTTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHH--HhCCCCEEEEeccCCC
Confidence 345566777789999999999999988 5567899999999865
No 320
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.28 E-value=0.007 Score=57.02 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-++..++.+.|+|||||||+.+.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567799999999999999999999875
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.28 E-value=0.016 Score=55.47 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcccc----------CCC----CCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWS----------GAA----TNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~----------~~~----~~avvIdaDe 252 (400)
+...+++++|+||+||||++..++...-.+ ..+ .++++|+++.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 467899999999999999999998752111 122 4778899886
No 322
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.26 E-value=0.016 Score=53.24 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.++|-.|+||||++..||..+ ...+..+.+||.|--.
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCCCC
Confidence 45557999999999999999988 4567799999999643
No 323
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.25 E-value=0.0074 Score=57.81 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=30.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-++..++.|.|+|||||||+.+.|+..+.. ..+.+.+++-+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~~ 84 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGKM 84 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTBC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCEE
Confidence 356779999999999999999999987621 23456666543
No 324
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.22 E-value=0.013 Score=50.65 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.|-+.++.|++||||||+..+|.--+
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999988655
No 325
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.19 E-value=0.02 Score=55.36 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.9
Q ss_pred CCCEEEEE--EcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLM--GGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL--~G~PGSGKSTlAk~LA~~l 236 (400)
..|..++| .|+||+||||+++.+++.+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35678888 9999999999999999876
No 326
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.13 E-value=0.017 Score=56.82 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=32.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
-+++.|++||||||+++.++..+ ...+..++++|.+ .+...+.+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~--~~~~~~~~~~D~~--~~~~~~~~~~ 82 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE--YMQGSRVIIIDPE--REYKEMCRKL 82 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEEESS--CCSHHHHHHT
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH--HHCCCEEEEEeCC--cCHHHHHHHc
Confidence 36789999999999999998876 2345677888765 3333444443
No 327
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.12 E-value=0.012 Score=57.53 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
..++++.|++||||||+++.|+..+.- ..+.+.++
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIE 205 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEEC
Confidence 458899999999999999999988732 34556665
No 328
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.10 E-value=0.015 Score=53.56 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=33.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+++.+.++-.|+||||++..||..+ . .+..+.+||.|--.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~l--a-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLL--S-KNNKVLLIDMDTQA 67 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHH--T-TTSCEEEEEECTTC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHH--H-CCCCEEEEECCCCC
Confidence 34455668899999999999999998 4 57899999999643
No 329
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.98 E-value=0.018 Score=51.76 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+.+.++-.|+||||++..||..+ ...+..+.+||.|.-
T Consensus 4 ~i~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 4 IISIVSGKGGTGKTTVTANLSVAL--GDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCCCC
Confidence 466677889999999999999988 445778999999974
No 330
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.97 E-value=0.022 Score=52.75 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=34.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
...+.+.++-.|+||||++..||..+ ...+.++.+||.|--.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHY--ARQGKKVGILDADFLG 59 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHH--HHTTCCEEEEECCSSC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCC
Confidence 34566778889999999999999988 4457789999999765
No 331
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.94 E-value=0.015 Score=58.61 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.|.|+|||||||+.+.|+.-..- ..+-+.+++.++
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~~ 67 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRM 67 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence 456789999999999999999999987621 234466665544
No 332
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.91 E-value=0.023 Score=53.06 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
....+++++|+|||||||.+-.++.++ .+.+.+++++.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kVli~k 63 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT--QFAKQHAIVFK 63 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEE
Confidence 456899999999999999999999988 45667777774
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.91 E-value=0.0082 Score=53.51 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=25.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.++.+.|++||||||+++.|+..+.-.+-..+.+.+++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 36788999999999999999988731000134566665543
No 334
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.90 E-value=0.021 Score=57.62 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccC----CCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSG----AATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~----~~~~avvIdaDe 252 (400)
....++.|.|+|||||||++..|+-..-.+. .+.++++|++..
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4567999999999999999998763321110 234578899876
No 335
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.89 E-value=0.039 Score=54.28 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCC
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEAD 251 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaD 251 (400)
..++.+.+|-.|+||||++..||..+ ...+.++++||.|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~L--a~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAH--ANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHH--HHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHH--HhCCCCEEEEECC
Confidence 34455666799999999999999887 3456789999999
No 336
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.89 E-value=0.019 Score=53.74 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+|.++|-.|+||||++..||..+ ...+..+.+||.|--.
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~L--a~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAAL--AEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEEECSSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHH--HHCCCeEEEEecCCCC
Confidence 45558999999999999999987 4457789999999643
No 337
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.88 E-value=0.012 Score=56.65 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=27.3
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+...-++..++.+.|++||||||+.+.|+..+
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3333334677899999999999999999998775
No 338
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.84 E-value=0.027 Score=52.77 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=32.9
Q ss_pred CEEEEEE--cCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 212 PVLLLMG--GGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 212 P~lILL~--G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+.+.+.. +-.|+||||++..||..+ ...+..+.+||.|--.
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~l--a~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLT--DKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHH--HHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHH--HhCCCeEEEEeCCCCC
Confidence 3455555 699999999999999887 4467789999999754
No 339
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=94.84 E-value=0.024 Score=51.94 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=33.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+.+.++-.|+||||++..||..+ ...+..+.+||.|.-
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVAL--AQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHH--HHTTCCEEEEECCCS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHH--HhCCCcEEEEECCCC
Confidence 466778899999999999999988 445778999999974
No 340
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.83 E-value=0.02 Score=51.99 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+.+.++-.|+||||++..||..+ ...+.++.+||.|.
T Consensus 4 vi~v~s~kgGvGKTt~a~~LA~~l--a~~g~~VlliD~D~ 41 (260)
T 3q9l_A 4 IIVVTSGKGGVGKTTSSAAIATGL--AQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCC
T ss_pred EEEEECCCCCCcHHHHHHHHHHHH--HhCCCcEEEEECCC
Confidence 466778889999999999999988 45677999999997
No 341
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.82 E-value=0.022 Score=57.60 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+..+++++|+||+||||++..++...-. ..+.++.+++.+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEM 242 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCC
Confidence 56779999999999999999999887521 1244788888765
No 342
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.80 E-value=0.014 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+.|+|||||||+.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
No 343
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.80 E-value=0.013 Score=55.75 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=26.6
Q ss_pred ccccccCCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 203 VPAALSERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 203 ~pl~~~~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+...-+ ..++.+.|+|||||||+.+.|+..+
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 33443346 7899999999999999999998765
No 344
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.79 E-value=0.016 Score=57.97 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=31.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.|.|+|||||||+.+.|+.-..- ..+-+.+++.++
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~~i 68 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGKTI 68 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 356789999999999999999999986521 234466655433
No 345
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.78 E-value=0.029 Score=50.58 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+.+.++-.|+||||++..||..+ ...+ ++.+||.|.-.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l--a~~g-~VlliD~D~q~ 40 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL--ALQG-ETLLIDGDPNR 40 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HTTS-CEEEEEECTTC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH--HhcC-CEEEEECCCCC
Confidence 466778999999999999999998 4567 99999999654
No 346
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.75 E-value=0.024 Score=53.17 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+++|.|++|+||||+++.++++.+ .++++.+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeec
Confidence 4889999999999999999998863 47777543
No 347
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.75 E-value=0.017 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-|++.|.+|+||||++..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47889999999999999998764
No 348
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.74 E-value=0.016 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+.|.|++||||||+.+.++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999999865
No 349
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.74 E-value=0.022 Score=56.40 Aligned_cols=42 Identities=12% Similarity=0.301 Sum_probs=33.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+..+++++|.||+||||++..++...- ..+.++.+++.+.=
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a--~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL--NDDRGVAVFSLEMS 85 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTCEEEEEESSSC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCCC
Confidence 4567999999999999999999988752 24557788887653
No 350
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.73 E-value=0.017 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.-+.|.|++||||||+.+.|....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457899999999999999999763
No 351
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.70 E-value=0.017 Score=57.50 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-+...++.|.|+|||||||+.+.|+.-..- ..+-+.+++.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~ 66 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDVL 66 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEE
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCEE
Confidence 457789999999999999999999976521 23445665433
No 352
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.66 E-value=0.018 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|++.|.+|+||||+...|....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4457899999999999999998764
No 353
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.65 E-value=0.018 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~l 236 (400)
|++.|.+|+||||++..+....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6888999999999999998764
No 354
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.65 E-value=0.022 Score=58.68 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHH--HHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDI--MKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~L--A~~lg~~~~~~~avvIdaDef 253 (400)
+...+++|.|+|||||||+++.+ +.... .+.+.+.|+..+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEET 79 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 46789999999999999999994 44331 1246788887663
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.63 E-value=0.018 Score=57.40 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=31.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.|.|+|||||||+.+.|+.-..- ..+-+.+++.++
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 67 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEKDV 67 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 456789999999999999999999976521 234466655433
No 356
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.63 E-value=0.012 Score=51.46 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
......+.|.|+|||||||+.+.|+...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3566789999999999999999987543
No 357
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.59 E-value=0.01 Score=65.18 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
+.|.-+|+.||||+|||.+|+++|.+++. +.+.+++.+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-----~f~~v~~~~ 546 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPE 546 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTC-----EEEECCHHH
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCC-----ceEEeccch
Confidence 56777999999999999999999999864 445555433
No 358
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.57 E-value=0.027 Score=57.46 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=34.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
....+++|+|.||+||||++..++...- ...+.++++++.++=
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a-~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWG-TAMGKKVGLAMLEES 282 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHT-TTSCCCEEEEESSSC
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHH-HhcCCcEEEEeccCC
Confidence 4667999999999999999999998762 112567889987653
No 359
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.55 E-value=0.031 Score=57.60 Aligned_cols=41 Identities=15% Similarity=0.358 Sum_probs=31.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+..+++|.|+|||||||++..++... ...+..++.+..++
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~--~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA--CANKERAILFAYEE 319 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH--HhCCCCEEEEEEeC
Confidence 466799999999999999999999876 22344566676554
No 360
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.54 E-value=0.017 Score=57.53 Aligned_cols=41 Identities=22% Similarity=0.196 Sum_probs=30.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-+...++.|.|+|||||||+.+.|+.-... ..+-+.++..+
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~ 78 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGKR 78 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCEE
Confidence 356779999999999999999999976521 23446665433
No 361
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.54 E-value=0.0087 Score=65.32 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
..+..+++.|+||+||||+|+.++..++. +.+.+++.++.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~~~l~ 548 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKGPELL 548 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCCSSST
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEechHhh
Confidence 45667899999999999999999999853 66667765553
No 362
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.53 E-value=0.025 Score=47.49 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.-|++.|.+|+||||+...|....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 44568899999999999999998763
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.53 E-value=0.02 Score=57.33 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=30.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
-+...++.|.|+|||||||+.+.|+.-... ..+-+.+++.+
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~~ 74 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRD 74 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCEE
Confidence 456789999999999999999999976521 23446666543
No 364
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.52 E-value=0.025 Score=59.08 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++..++.+.|++||||||+++.|+..+.- ..+.+.+++-+++
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDV---DSGSICLDGHDVR 408 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCEEhh
Confidence 45678999999999999999999987631 2355777765554
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.52 E-value=0.021 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.=|++.|.+|+||||+...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998654
No 366
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.50 E-value=0.021 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|++.|.+|+||||+...|....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3458899999999999999998764
No 367
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.49 E-value=0.024 Score=57.70 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=34.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
.+..+++++|.||+||||++..++...-. .+.++++++.++=.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~--~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLEMGK 237 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHH--TTCEEEEECSSSCT
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHH--cCCEEEEEECCCCH
Confidence 46679999999999999999999987632 35578888877543
No 368
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.48 E-value=0.015 Score=57.61 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
-+...++.|.|+|||||||+.+.|+.-.. ...+-+.+++.++
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i 64 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDV 64 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEEC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEEC
Confidence 46678999999999999999999997652 1234566765444
No 369
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.47 E-value=0.026 Score=48.23 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.-|++.|.+|+||||+...|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 370
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.46 E-value=0.027 Score=47.45 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.-|++.|.+|+||||+...|....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455678899999999999999998753
No 371
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.45 E-value=0.021 Score=57.19 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-++..++-+.|+|||||||+.+.|+.-+. -..+-+.+++.++.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELT 93 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECC
Confidence 46778999999999999999999998652 12355777765554
No 372
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.45 E-value=0.021 Score=52.71 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
.+.+.+.++-.|+||||++..||..+ ...+..+.+||.|-.
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYL--ARLGKRVLLVDLDPQ 46 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHH--HHTTCCEEEEECCTT
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHH--HHCCCCEEEEECCCC
Confidence 34555667888999999999999988 445779999999974
No 373
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.45 E-value=0.025 Score=51.05 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.|-+.++.|++||||||+..+|.--++
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999876654
No 374
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.44 E-value=0.024 Score=48.74 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.-|+|.|.||+||||+...|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999999875
No 375
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.41 E-value=0.023 Score=47.10 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.=|++.|.+|+||||+...|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998764
No 376
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.41 E-value=0.035 Score=55.97 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+..+++|+|.||+||||++..++...-. ..+.++++++...
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl~~slE~ 239 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVGIYSLEM 239 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEECCC
Confidence 45679999999999999999999887521 2355788888764
No 377
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.41 E-value=0.024 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..|.+.|.||+||||+...|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.36 E-value=0.02 Score=57.30 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=29.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
-+...++.|.|+|||||||+.+.|+.-..- ..+-+.+++
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g 64 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGD 64 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETT
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECC
Confidence 356779999999999999999999976521 224455554
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.34 E-value=0.024 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.=|++.|.+|+||||+...|....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998764
No 380
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.33 E-value=0.029 Score=48.26 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+.-|+|.|.+|+||||+...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999998764
No 381
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.30 E-value=0.024 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.=|++.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 382
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.28 E-value=0.023 Score=59.32 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++..++.+.|++||||||+++.|+..+.- ..+.+.+++-+++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~~~ 408 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGHDLR 408 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCEEcc
Confidence 45568999999999999999999987621 2355777765554
No 383
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.23 E-value=0.026 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|++.|.+|+||||+...|....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3458999999999999999998654
No 384
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.23 E-value=0.025 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.=|++.|.+|+||||+...|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 447899999999999999998653
No 385
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.22 E-value=0.039 Score=46.90 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.-|+|.|.+|+||||+...|....
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCc
Confidence 345668999999999999999998763
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.19 E-value=0.025 Score=56.92 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
-+...++.|.|++||||||+.+.|+.-+. ..+-+.+++.++.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQIDGVSWD 85 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEEESSCBTT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC----CCeEEEECCEECC
Confidence 46778999999999999999999997652 2355777776554
No 387
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.19 E-value=0.026 Score=56.06 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=27.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
.+.++++.|+||+||||++..++...| ..+.+++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEe
Confidence 456789999999999999999998742 35566665
No 388
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.18 E-value=0.027 Score=46.94 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|++.|.+|+||||+...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998663
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.17 E-value=0.016 Score=57.56 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=24.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-+...++.|.|+|||||||+.+.|+.-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3567899999999999999999999765
No 390
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.14 E-value=0.03 Score=47.03 Aligned_cols=26 Identities=15% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.-|++.|.+|+||||+...|....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 45568999999999999999998764
No 391
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.14 E-value=0.029 Score=46.46 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.=|++.|.+|+||||+...|....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 347899999999999999998753
No 392
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.14 E-value=0.033 Score=49.11 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+.-|++.|++|+||||++..|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568899999999999999999865
No 393
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.09 E-value=0.027 Score=56.00 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=29.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
++++.|+||+||||++-.++....-...+..+++||+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 799999999999999998877652101145678898765
No 394
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.08 E-value=0.029 Score=47.05 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..-|+|.|.+|+||||+...|....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998764
No 395
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.08 E-value=0.034 Score=58.42 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=30.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHH
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVI 259 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~i 259 (400)
..++++.|+||+||||++..++..+ ...+..+. +-+-+-+..+.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l--~~~g~~Vl-~~ApT~~Aa~~L 248 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA--ESLGLEVG-LCAPTGKAARRL 248 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEE-EEESSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEE-EecCcHHHHHHh
Confidence 4588999999999999999998876 23344444 444444433333
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.08 E-value=0.042 Score=45.82 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.-|++.|.+|+||||+...+....
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999997653
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.03 E-value=0.032 Score=46.25 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
+.=|++.|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 446899999999999999999865
No 398
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.02 E-value=0.032 Score=55.11 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
+-++++.|++||||||+...|.-.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 348889999999999999998743
No 399
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.00 E-value=0.034 Score=47.76 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.-|++.|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456888999999999999999865
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.97 E-value=0.032 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|+|.|.+|+||||++..|....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998753
No 401
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.95 E-value=0.034 Score=53.98 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=23.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
-.|-+.++.|+|||||||+..++.--+.
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3577999999999999999999865443
No 402
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.91 E-value=0.032 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..++.+.|+|||||||+.+.|+ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4588999999999999999999 65
No 403
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.90 E-value=0.043 Score=46.13 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.=|+|.|.+|+||||+...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999999865
No 404
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.88 E-value=0.033 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~ 235 (400)
=|++.|.+|+||||+...+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999743
No 405
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.88 E-value=0.019 Score=60.01 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
++..++.+.|++||||||+++.|+..+.- ..+.+.+++-+++.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~~~~ 407 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKD 407 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGG
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCEEhhh
Confidence 45668999999999999999999987631 23557787766653
No 406
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.86 E-value=0.038 Score=46.23 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|+|.|.+|+||||+...|....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3458999999999999999998653
No 407
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.86 E-value=0.03 Score=46.55 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~ 235 (400)
=|++.|.+|+||||+...+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999998643
No 408
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.83 E-value=0.041 Score=52.99 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=22.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+++.||||+|||+++..|+..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3479999999999999999999975
No 409
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.81 E-value=0.028 Score=48.59 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~ 235 (400)
-|+|.|.||+||||+...++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 410
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.81 E-value=0.024 Score=59.37 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++..++.+.|++||||||+++.|+..+.- ..+.+.+++-+++
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDP---ASGTISLDGHDIR 409 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCEEhh
Confidence 44568999999999999999999987621 2355777765554
No 411
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.80 E-value=0.035 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.-|++.|.+|+||||+...|....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457888999999999999998653
No 412
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.78 E-value=0.024 Score=58.81 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
-+||.|+||+|||++|+.|+..++
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 468999999999999999999873
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.77 E-value=0.036 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|+|.|.+|+||||+...|....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4568999999999999999998754
No 414
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.76 E-value=0.046 Score=47.43 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+.=|+|.|.+|+||||+...|...-
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345668999999999999999998763
No 415
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=93.76 E-value=0.09 Score=51.80 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhcccc----CCCCCeEEEeCCc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWS----GAATNAVVVEADA 252 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~----~~~~~avvIdaDe 252 (400)
.++.+.+|-.|+||||++..||..+--. ..+..+++||.|-
T Consensus 109 ~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 109 YVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp EEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 3455666889999999999999877210 2367899999995
No 416
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.76 E-value=0.027 Score=59.19 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=32.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
++..++.+.|++||||||+++.|+..+.- ..+.+.+++-+++
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~~i~ 420 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGIDIR 420 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTEEGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCEEhh
Confidence 45678999999999999999999987631 2355777776555
No 417
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.74 E-value=0.03 Score=58.80 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=33.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
++..++.+.|++||||||+++.|+..+.- ..+.+.+++-+++.
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDELDVRT 409 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSSBGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCEEccc
Confidence 45668999999999999999999887631 24568888777664
No 418
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.73 E-value=0.035 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.-|++.|.+|+||||++..|....
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998764
No 419
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.70 E-value=0.036 Score=47.10 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|++.|.+|+||||+...|....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998754
No 420
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.70 E-value=0.037 Score=46.70 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|++.|.+|+||||+...|....
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34468999999999999999998753
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.69 E-value=0.03 Score=57.41 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...++.|.|++||||||+++.|+...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45678899999999999999999865
No 422
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.66 E-value=0.041 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~l 236 (400)
|++.|.+|+||||+...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998654
No 423
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.66 E-value=0.035 Score=46.58 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.=|+|.|.+|+||||+...|...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999764
No 424
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.66 E-value=0.11 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..+.++.|.|++|.||||+|.+++..
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 34678999999999999999999753
No 425
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.66 E-value=0.034 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
-|+|.|.+|+||||+...|....
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 57788999999999999998763
No 426
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.65 E-value=0.04 Score=47.21 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|+|.|.+|+||||+...|....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568999999999999999998754
No 427
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.63 E-value=0.037 Score=46.89 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|++.|.+|+||||+...|....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4458999999999999999998754
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.60 E-value=0.039 Score=57.62 Aligned_cols=28 Identities=36% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.++..++-|.|+|||||||+.+.|+..+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3567899999999999999999999865
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.56 E-value=0.037 Score=57.66 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+..++.|.|+|||||||+.+.|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567799999999999999999999865
No 430
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.041 Score=46.36 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.-|+|.|.+|+||||+...|....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34568999999999999999998754
No 431
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.56 E-value=0.038 Score=47.03 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 015774 215 LLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 215 ILL~G~PGSGKSTlAk~LA~~l 236 (400)
|++.|.+|+||||+...+....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6789999999999999998764
No 432
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.52 E-value=0.052 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
-....+++.|+||+||||+|.+|.++
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 35678999999999999999999875
No 433
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.52 E-value=0.07 Score=52.45 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
...-+++.|.+|+||||++.+|..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999886
No 434
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.50 E-value=0.042 Score=51.74 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADA 252 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDe 252 (400)
.+.+.++-.|+||||++..||..+ ...+..+.+||.|-
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTAL--LYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHH--HHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHH--HHCCCcEEEEECCC
Confidence 455666888999999999999988 45677899999998
No 435
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.48 E-value=0.044 Score=46.92 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..+.-|+|.|.+|+||||+...|...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 45567899999999999999999865
No 436
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.47 E-value=0.11 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.++.+.|+|||||||+.+.|+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999999843
No 437
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.45 E-value=0.043 Score=47.26 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|+|.|.+|+||||+...|....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 438
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.45 E-value=0.04 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..++.+.|+|||||||+++.|+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4588999999999999999999765
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.42 E-value=0.036 Score=56.62 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCCEE--EEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVL--LLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~l--ILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.+ +.|.|+|||||||+.+.|+...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 46667 8999999999999999998763
No 440
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.42 E-value=0.039 Score=46.74 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~ 234 (400)
+.+.-|++.|.+|+||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567889999999999999999874
No 441
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.41 E-value=0.056 Score=45.88 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...-|+|.|.+|+||||+...|....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34468999999999999999998763
No 442
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.40 E-value=0.046 Score=46.17 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.=|++.|.+|+||||+...+....
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998653
No 443
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.36 E-value=0.048 Score=46.44 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=21.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..=|+|.|.+|+||||+.+.+...+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458999999999999998887665
No 444
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.30 E-value=0.046 Score=46.95 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|++.|.+|+||||+...|....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998764
No 445
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.28 E-value=0.055 Score=49.64 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 209 ERSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 209 ~~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...+.-|+|.|.+||||||+...|...-
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456678999999999999999998764
No 446
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.068 Score=45.87 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..+.=|++.|.+|+||||+...|...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34566899999999999999999874
No 447
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.05 Score=46.47 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.-|+|.|.+|+||||+...|....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998764
No 448
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.22 E-value=0.053 Score=46.98 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=22.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.-|+|.|.+|+||||+...|....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45568999999999999999998764
No 449
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.21 E-value=0.038 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..++.+.|+|||||||+.+.|+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 4588999999999999999998765
No 450
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.16 E-value=0.08 Score=55.07 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=34.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAF 253 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDef 253 (400)
...+++++|.+|+||||++..||..+ ...+..+.++|.|-.
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l--~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRL--ADMGFDVHLTTSDPA 366 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESCCC
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHH--HHCCCcEEEEeCCCc
Confidence 45788999999999999999999887 445778999999943
No 451
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.14 E-value=0.062 Score=48.18 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..+.-|+|.|.+|+||||++..|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44567899999999999999999765
No 452
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.12 E-value=0.063 Score=46.37 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|+|.|.+|+||||+...|....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458899999999999999998654
No 453
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.11 E-value=0.052 Score=46.03 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
+.-|++.|.+|+||||+...|...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999854
No 454
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.09 E-value=0.053 Score=46.63 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..=|+|.|.+|+||||+...|...-
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998764
No 455
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.07 E-value=0.051 Score=49.29 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..+.-|+|.|.+|+||||+...|....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678999999999999999998765
No 456
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.07 E-value=0.083 Score=48.67 Aligned_cols=39 Identities=23% Similarity=0.188 Sum_probs=27.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
....+.++.|+|||||||-+-..+..+ ...+.+++++.+
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~--~~~~~kvl~~kp 56 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRF--QIAQYKCLVIKY 56 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEcc
Confidence 456899999999999996666555555 234567777753
No 457
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.03 E-value=0.067 Score=46.07 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
..+.-|++.|.+|+||||+...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45567899999999999999999865
No 458
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.00 E-value=0.15 Score=49.39 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.-|+|.|.+|+||||++..|...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSS
T ss_pred CcceEEEECCCCccHHHHHHHHhCC
Confidence 3456899999999999999998754
No 459
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.99 E-value=0.081 Score=49.65 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=28.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEe
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVE 249 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvId 249 (400)
....+.+++|++||||||.+-..+.++ ...+.+++++.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~--~~~g~kvli~k 63 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRG--IYAKQKVVVFK 63 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH--HHTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH--HHcCCceEEEE
Confidence 467899999999999999666666666 33456777663
No 460
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.95 E-value=0.07 Score=45.54 Aligned_cols=27 Identities=41% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.-|++.|.+|+||||+...+....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456678999999999999999998653
No 461
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.93 E-value=0.052 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.=|+|.|.+|+||||+...|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998754
No 462
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.92 E-value=0.088 Score=51.95 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=24.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+...+.+.|+|||||||+.+.|+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56789999999999999999999987
No 463
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.92 E-value=0.057 Score=47.02 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
++.-|++.|.+|+||||+...+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3446789999999999999999874
No 464
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.89 E-value=0.06 Score=46.30 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|+|.|.+|+||||+...|....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 44568999999999999999998653
No 465
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.056 Score=46.81 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|++.|.+|+||||+...|....
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998754
No 466
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.079 Score=45.45 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
+.+.-|+|.|.+|+||||+...|...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45667899999999999999999854
No 467
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.85 E-value=0.061 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
..=|+|.|.+|+||||+...|....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3458999999999999999998764
No 468
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.83 E-value=0.069 Score=63.90 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=35.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFK 254 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefR 254 (400)
+++..+++.||||+||||+|..++... ...+..+++++.+...
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEccccc
Confidence 468899999999999999999998876 2456789999987654
No 469
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.83 E-value=0.058 Score=47.07 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|+|.|.+|+||||+...|....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468899999999999999998653
No 470
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.83 E-value=0.059 Score=53.86 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=24.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
..|.++++.|++||||||+...+.--++
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3467999999999999999999987654
No 471
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.80 E-value=0.074 Score=44.86 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|++.|.+|+||||+...+....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568889999999999999998654
No 472
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.79 E-value=0.062 Score=46.40 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|+|.|.+|+||||+...|....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998754
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.74 E-value=0.052 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+...++.|.|+|||||||+++.|+..+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999999865
No 474
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.71 E-value=0.063 Score=46.85 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|+|.|.+|+||||++..|....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568999999999999999998764
No 475
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.67 E-value=0.066 Score=46.45 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=21.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...=|+|.|.+|+||||+...+....
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999888764
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.06 Score=57.18 Aligned_cols=27 Identities=37% Similarity=0.401 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
++..++-|.|+|||||||+.+.|+..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 567799999999999999999999876
No 477
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.67 E-value=0.08 Score=46.09 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.=|+|.|.+|+||||++..|....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 456678999999999999999998654
No 478
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=92.66 E-value=0.069 Score=52.43 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMK 234 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~ 234 (400)
..|-+.+++|++||||||+..+|.-
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999875
No 479
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.60 E-value=0.14 Score=52.24 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=46.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhccccCCCCC--eEEEeCCccccchHHHHHHhcC-------CCCChhhHhHHHHHH
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESFWSGAATN--AVVVEADAFKETDVIYRALSSK-------GHHDDMLQTAELVHQ 281 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~--avvIdaDefRe~D~irk~L~~~-------G~~~d~~~aa~~v~~ 281 (400)
..+-+.+.|+||+||||+++.|+.... ..+++ ++++-.|+-.+ .. ..+... ...+++. ..|-
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~--~~~~~v~~I~~lIGER~~--Ev-~~~~~~~~~~vV~atadep~----~~r~ 243 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIA--YNHPDCVLMVLLIDERPE--EV-TEMQRLVKGEVVASTFDEPA----SRHV 243 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHH--HHCTTSEEEEEEESSCHH--HH-HHHHTTCSSEEEEECTTSCH----HHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHh--hcCCCeeEEEEEecCChH--HH-HHHHHHhCeEEEEeCCCCCH----HHHH
Confidence 456788999999999999999987641 11123 34554443221 11 112111 0111111 1223
Q ss_pred HHHHHHHHHHHHHHhCCCcEEE
Q 015774 282 SSTDAASSLLVTALNEGRDVIM 303 (400)
Q Consensus 282 ~~~~~ae~lie~AL~eG~dVII 303 (400)
.+...+-.++++..++|+||+|
T Consensus 244 ~~a~~alt~AEyfrd~G~dVLi 265 (422)
T 3ice_A 244 QVAEMVIEKAKRLVEHKKDVII 265 (422)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEE
Confidence 3334455577777789998875
No 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.60 E-value=0.055 Score=57.36 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
....++.|.|+|||||||+++.|+..+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999999865
No 481
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.60 E-value=0.047 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
|-+.++.|++||||||+..+|.--+
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHh
Confidence 3499999999999999999998443
No 482
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.55 E-value=0.07 Score=46.07 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.=|++.|.+|+||||+...+....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998764
No 483
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.54 E-value=0.069 Score=46.24 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...=|+|.|.+|+||||+...+....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 34568999999999999999998754
No 484
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.51 E-value=0.052 Score=45.90 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.=|+|.|.+|+||||+...+....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458999999999999999998763
No 485
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.48 E-value=0.064 Score=55.61 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.++.|.|++||||||+.+.|+.-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 899999999999999999999865
No 486
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.48 E-value=0.072 Score=45.96 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+.+.-|+|.|.+|+||||+...|....
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCC
Confidence 344568999999999999999998654
No 487
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.47 E-value=0.056 Score=57.29 Aligned_cols=27 Identities=22% Similarity=0.339 Sum_probs=24.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
....++.|.|+|||||||+.+.|+..+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 566799999999999999999999865
No 488
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.42 E-value=0.088 Score=55.51 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHH
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRAL 263 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L 263 (400)
+.+|-||||+||||++..+...+- ..+..+.+.. -+=...|.+.+.|
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~--~~~~~ILv~a-~TN~AvD~i~erL 253 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAV--KQGLKVLCCA-PSNIAVDNLVERL 253 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEE-SSHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEc-CchHHHHHHHHHH
Confidence 678999999999998888776652 2344544443 2222234444444
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.40 E-value=0.052 Score=56.68 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
+...++.|.|++||||||+++.|+..+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999865
No 490
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.40 E-value=0.11 Score=54.77 Aligned_cols=49 Identities=22% Similarity=0.246 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCccccchHHHHHHh
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKETDVIYRALS 264 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe~D~irk~L~ 264 (400)
+.++.|+||+||||++..++..+- ...+.-+++-+.+=+..|.+.+.+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~--~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLA--RQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH--TSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 678999999999999998877651 1122334554444444566666654
No 491
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.37 E-value=0.16 Score=50.21 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 015774 214 LLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 214 lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.+.|.|||||||+.+.|....
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58899999999999999998654
No 492
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.36 E-value=0.065 Score=49.93 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.-|.+.|.|||||||+...|....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998653
No 493
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=92.35 E-value=0.03 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 210 RSPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 210 ~~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
.+. ++.|.|+|||||||+.+.|.--++
T Consensus 59 ~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 59 GGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 445 999999999999999999966553
No 494
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=92.33 E-value=0.046 Score=53.64 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeCCcccc
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEADAFKE 255 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIdaDefRe 255 (400)
++.+.++-.|+||||++..||..+ ...+..+++||.|--..
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~L--A~~G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYF--ALQGKRVLYVDCDPQCN 43 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHH--HHTTCCEEEEECCTTCT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH--HhCCCcEEEEEcCCCCC
Confidence 566778999999999999999888 45678999999997653
No 495
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.31 E-value=0.061 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 015774 213 VLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 213 ~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.-|.|.|++||||||+.+.|...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 34689999999999999998754
No 496
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.29 E-value=0.075 Score=52.77 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=26.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHhccccCCCCCeEEEeC
Q 015774 212 PVLLLMGGGMGAGKSTVLKDIMKESFWSGAATNAVVVEA 250 (400)
Q Consensus 212 P~lILL~G~PGSGKSTlAk~LA~~lg~~~~~~~avvIda 250 (400)
..=+++.|++||||||++..+...+ ...+..++++|+
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~--~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG--LLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH--HHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH--HHCCCcEEEEeC
Confidence 3457889999999999988776654 122456677764
No 497
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=92.28 E-value=0.063 Score=53.10 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhcc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKESF 237 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~lg 237 (400)
++..|.+-|+-||||||+++.|++.++
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999999984
No 498
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.25 E-value=0.082 Score=46.36 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
...-|+|.|.+|+||||+...|....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468889999999999999998754
No 499
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.24 E-value=0.075 Score=46.55 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHh
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKE 235 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~ 235 (400)
.+.=|+|.|.+|+||||+...|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999999754
No 500
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.24 E-value=0.098 Score=45.48 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHhc
Q 015774 211 SPVLLLMGGGMGAGKSTVLKDIMKES 236 (400)
Q Consensus 211 ~P~lILL~G~PGSGKSTlAk~LA~~l 236 (400)
.+.-|+|.|.+|+||||+...|....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45578999999999999999998653
Done!