BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015777
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 146/343 (42%), Gaps = 31/343 (9%)
Query: 63 VVCFGEMLIDFV--PTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKTTLFC 120
++CFGE LID + P V RLGG+ F+G
Sbjct: 7 ILCFGEALIDXLAQPLVKK---GXPRAFLQCAGGAPANVAVAVARLGGAVQFVGX----- 58
Query: 121 FYEHVKVIILPCPKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGERE 180
+G+D FG L D E V G+ A+TALAFV L + GER
Sbjct: 59 --------------LGSDXFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERS 104
Query: 181 FMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLS 240
F FYR P+AD+L + + + A IFH S S G ++S
Sbjct: 105 FSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSXTDADIAEVTFEGXRRAQAAGAIVS 164
Query: 241 YDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANL 300
+D N R LWP+ + + AD++K+S EE+ +L +AV+ +L+
Sbjct: 165 FDLNFRPXLWPNGENPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRA 224
Query: 301 KLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDF-------S 353
+LLLVT+ +YT+ G V +V+ D+ AGDAFV G L + F
Sbjct: 225 QLLLVTDAAGPVHWYTRTAGGEVPTFRVQVQDSNAAGDAFVGGXLYTFAQQFDDAAALID 284
Query: 354 LLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVLNAIH 396
+ + LRFA A GAL V +GA A P VL+ I
Sbjct: 285 FCHDPESIVSTLRFAAAVGALAVTRQGAFTAXPXLSEVLSLIQ 327
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 111 bits (277), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 127/282 (45%), Gaps = 25/282 (8%)
Query: 105 RLGGSSAFIGKTTLFCFYEHVKVIILPCPKVGADEFGYMLADILKENNVNGAGMRFDPGA 164
RLGG FIG C +G D+ G L + ++N V+ +R D
Sbjct: 62 RLGGECGFIG-----------------C--LGDDDAGRFLRQVFQDNGVDVTFLRLDADL 102
Query: 165 RTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXX 224
+A+ V L +DGER F + +P AD + DL + + F++ SI L P
Sbjct: 103 TSAVLIVNLTADGERSFTYLVHPGADTYVSPQ--DLPPFRQYEWFYFSSIGLTDRPAREA 160
Query: 225 XXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGE 284
G + +D NLR +W + D+ E I A I K+S +E+ L+ G
Sbjct: 161 CLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLS-GA 219
Query: 285 DPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGI 344
+ DA Y L +++ G DG T + +V+ VD TGAGDAFV G+
Sbjct: 220 SHWQDARYY-LRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGL 278
Query: 345 LSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALP 386
L LS + L +A+ ANACGA+ V +GA+ ALP
Sbjct: 279 LFTLSR--ANCWDHALLAEAISNANACGAMAVTAKGAMTALP 318
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 125/282 (44%), Gaps = 25/282 (8%)
Query: 105 RLGGSSAFIGKTTLFCFYEHVKVIILPCPKVGADEFGYMLADILKENNVNGAGMRFDPGA 164
RLGG FIG C +G D+ G L + ++N V+ +R D
Sbjct: 62 RLGGECGFIG-----------------C--LGDDDAGRFLRQVFQDNGVDVTFLRLDADL 102
Query: 165 RTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXX 224
+A+ V L +DGER F + +P AD + DL + + F++ SI L P
Sbjct: 103 TSAVLIVNLTADGERSFTYLVHPGADTYVSPQ--DLPPFRQYEWFYFSSIGLTDRPAREA 160
Query: 225 XXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGE 284
G + +D NLR W + D+ E I A I K+S +E+ L+ G
Sbjct: 161 CLEGARRXREAGGYVLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLS-GA 219
Query: 285 DPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGI 344
+ DA Y L +++ G DG T + +V+ VD TGAGDAFV G+
Sbjct: 220 SHWQDARYY-LRDLGCDTTIISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGL 278
Query: 345 LSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALP 386
L LS + L +A+ ANACGA V +GA ALP
Sbjct: 279 LFTLSR--ANCWDHALLAEAISNANACGAXAVTAKGAXTALP 318
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 142/331 (42%), Gaps = 31/331 (9%)
Query: 63 VVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKTTLFCFY 122
VV GE+L+D + T SL++S RLG A I
Sbjct: 24 VVSLGEILVDXISTEEVNSLSQSREYTRHFGGSPANIAVNLSRLGKKVALI--------- 74
Query: 123 EHVKVIILPCPKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFM 182
++GAD FG L D+LK + G++ D RT + +V+ +S +++
Sbjct: 75 ----------SRLGADAFGNYLLDVLKGEQIITDGIQQDKERRTTIVYVS-KSTRTPDWL 123
Query: 183 FYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYD 242
YR AD LQE ++ LI ++K+FH + L +P G ++ +D
Sbjct: 124 PYRE--ADXYLQEDDIIFELIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFD 181
Query: 243 PNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKL 302
P R LWP D + I AD +K S ++ L + P + V + +K
Sbjct: 182 PCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDARHLFGPDSP--ENYVKRYLELGVKA 239
Query: 303 LLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLR 362
+++T G +G + R+ +AVD TGAGDAF +G + L ++ ++
Sbjct: 240 VILTLGEEGVIASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFICGLLDGYT-------VK 292
Query: 363 DALRFANACGALTVMERGAIPALPTREAVLN 393
+++ N A + GA+ +P++E ++
Sbjct: 293 RSIKLGNGVAAFKIRGVGALSPVPSKEDIIK 323
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 115/263 (43%), Gaps = 13/263 (4%)
Query: 121 FYEHVKVIILPC---PKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDG 177
F + V + +PC VG D FG + L + V+ G+ P T AFVT + G
Sbjct: 43 FIDQVTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSG 102
Query: 178 EREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGV 237
+R+F+F +A L +D +++ FH SL + G
Sbjct: 103 DRDFIFNIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAVTIVKANGG 162
Query: 238 VLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFH 297
V+S+DPN+R + R+ + + E DI SE E+ L+ P + +
Sbjct: 163 VISFDPNIRKEXL-DIPEXRDALHFVLELTDIYXPSEGEVLLLSPHSTP--ERAIAGFLE 219
Query: 298 ANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQK 357
+K ++V G G YY+ + V+ VE VD TGAGD F ++ F
Sbjct: 220 EGVKEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGF----- 274
Query: 358 EDQLRDALRFANACGALTVMERG 380
D R AL++ANACGAL V RG
Sbjct: 275 -DAHR-ALQYANACGALAVTRRG 295
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 133/324 (41%), Gaps = 45/324 (13%)
Query: 62 LVVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKTTLFCF 121
L+ GE+LID + G L + RLG S+ I
Sbjct: 3 LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLI-------- 53
Query: 122 YEHVKVIILPCPKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREF 181
KVG D FG L + L + NV+ G+ D T + FV L+ F
Sbjct: 54 -----------SKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSF 101
Query: 182 MFYRNPSA-DMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLS 240
+ Y + + + L + D+ + +AKI ++GS+ L P ++ +
Sbjct: 102 LLYDDVAYFNXTLNDINWDI--VEEAKIVNFGSVILARNPSRETVXKVIKKIKGSSLI-A 158
Query: 241 YDPNLRLPLWPSADKAREGIL--SIWETADIIKISEEEISFL-TQGEDPYDDAVVYKLFH 297
+D NLRL LW ++ +L SI + ADI+K SEEE+ +L QG +
Sbjct: 159 FDVNLRLDLWRGQEEEXIKVLEESI-KLADIVKASEEEVLYLENQGVEVKGSX------- 210
Query: 298 ANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQK 357
L +T GP GCR + V V +D TGAGDAF A +L + L
Sbjct: 211 ----LTAITLGPKGCRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGILKLKGLDLL 266
Query: 358 EDQLRDALRFANACGALTVMERGA 381
+ +FAN AL+ +RGA
Sbjct: 267 K-----LGKFANLVAALSTQKRGA 285
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 114/265 (43%), Gaps = 24/265 (9%)
Query: 134 KVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVT------LRSDGEREFMFYRNP 187
KVG DEFGY + L+ V+ + M+ DP A T + F+ L+S E ++YR
Sbjct: 55 KVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKS----ESIYYRKG 110
Query: 188 SADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRL 247
SA L ++D + A + H I+L S+D N+RL
Sbjct: 111 SAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASN---RSFDTNIRL 167
Query: 248 PLWPSADKAREGILSIWETADI-IKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVT 306
LW SA++A+ IL + + I++ + S + GE D A K F +++++
Sbjct: 168 KLW-SAEEAKREILKLLSKFHLKFLITDTDDSKIILGESDPDKAA--KAFSDYAEIIVMK 224
Query: 307 EGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALR 366
GP G Y G +V D TGAGDA L SL K ++ AL
Sbjct: 225 LGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFL-------SLYYKGFEMEKALD 277
Query: 367 FANACGALTVMERGAIPALPTREAV 391
+A L VM RG LPT + +
Sbjct: 278 YAIVASTLNVMIRGDQENLPTTKDI 302
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 132/324 (40%), Gaps = 45/324 (13%)
Query: 62 LVVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKTTLFCF 121
L+ GE+LID + G L + RLG S+ I
Sbjct: 3 LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLI-------- 53
Query: 122 YEHVKVIILPCPKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREF 181
KVG D FG L + L + NV+ G+ D T + FV L+ F
Sbjct: 54 -----------SKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSF 101
Query: 182 MFYRNPSA-DMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLS 240
+ Y + + + L + D+ + +AKI ++GS+ L P ++ +
Sbjct: 102 LLYDDVAYFNXTLNDINWDI--VEEAKIVNFGSVILARNPSRETVXKVIKKIKGSSLI-A 158
Query: 241 YDPNLRLPLWPSADKAREGIL--SIWETADIIKISEEEISFL-TQGEDPYDDAVVYKLFH 297
+D NLRL LW ++ +L SI + ADI+K SEEE+ +L QG +
Sbjct: 159 FDVNLRLDLWRGQEEEXIKVLEESI-KLADIVKASEEEVLYLENQGVEVKGSX------- 210
Query: 298 ANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQK 357
L +T GP G R + V V +D TGAGDAF A +L + L
Sbjct: 211 ----LTAITLGPKGFRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGILKLKGLDLL 266
Query: 358 EDQLRDALRFANACGALTVMERGA 381
+ +FAN AL+ +RGA
Sbjct: 267 K-----LGKFANLVAALSTQKRGA 285
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 116/267 (43%), Gaps = 19/267 (7%)
Query: 134 KVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDG-EREFMFYRNPSADML 192
++G D G L ++ + + D +T F +DG + ++R SA
Sbjct: 80 RLGTDSXGRYLLAAXAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASH 139
Query: 193 LQEAELDLSLITKAKIFH----YGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLP 248
A++D + + A+ H + +IS T P G +S+DPNLR
Sbjct: 140 XGVADIDEAWLLSARHLHATGVFPAISATTLPAARKTXDLXRAA---GRSVSFDPNLRPT 196
Query: 249 LWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEG 308
LW + + R+ I + AD + EE FLT P A Y+ A KL++V G
Sbjct: 197 LWATPELXRDAINDLATRADWVLPGXEEGRFLTGETTPEGVARFYRQLGA--KLVVVKLG 254
Query: 309 PDGCRYYTKDFSGRVQGLKV-EAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRF 367
+G + + SGRV G V E VD GAGD F G++S L + + A++
Sbjct: 255 AEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLGVPE-------AVKR 307
Query: 368 ANACGALTVMERGAIPALPTREAVLNA 394
GA V G LPTR A LNA
Sbjct: 308 GAWIGARAVQVLGDSEGLPTR-AELNA 333
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/339 (22%), Positives = 131/339 (38%), Gaps = 32/339 (9%)
Query: 63 VVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKTTLFCFY 122
V+ G + +D P SG+ LA+ R G +SA + +
Sbjct: 11 VLAIGRLGVDIYPLQSGVGLADVQSFGKYLGGSAANVSVAAARHGHNSALLSR------- 63
Query: 123 EHVKVIILPCPKVGADEFG-YMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREF 181
VG D FG Y+LA+ L+ V+ + D +T + F + +
Sbjct: 64 ------------VGNDPFGEYLLAE-LERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPL 110
Query: 182 MFYRNPSA-DMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLS 240
FYR P A D+ ++ A++ L + +A I + EP +
Sbjct: 111 YFYREPKAPDLNIESADVSLDDVREADILWFTLTGFSEEPSRGTHREILTTRANRRHTI- 169
Query: 241 YDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANL 300
+D + R W S ++A + + + + ++EE +P + L +
Sbjct: 170 FDLDYRPXFWESPEEATKQAEWALQHSTVAVGNKEECEIAVGETEP--ERAGRALLERGV 227
Query: 301 KLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQ 360
+L +V +GP G TKD + V V+ ++ GAGDAF + L +++
Sbjct: 228 ELAIVKQGPKGVXAXTKDETVEVPPFFVDVINGLGAGDAFGGALCHGLLSEWP------- 280
Query: 361 LRDALRFANACGALTVMERGAIPALPTREAVLNAIHAPV 399
L LRFAN GAL A PT + V +++ V
Sbjct: 281 LEKVLRFANTAGALVASRLECSTAXPTTDEVEASLNQKV 319
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 26/265 (9%)
Query: 134 KVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVT------LRSDGEREFMFYRNP 187
+VG DEFG + + + ++ + ++ D + T + F+ ++S E ++YR
Sbjct: 55 RVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKS----ELVYYRKG 110
Query: 188 SADMLLQEAELDLSLITKAKIFHYGSISL-ITEPCXXXXXXXXXXXXXXGVVLSYDPNLR 246
SA L +++ + + +++ H I+L I++ S D N+R
Sbjct: 111 SAGSRLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIR 166
Query: 247 LPLWPSADKAREGILSIWETADI-IKISE-EEISFLTQGEDPYDDAVVYKLFHANLKLLL 304
LW S +KA+E ILSI + DI + I++ ++ L DP D K +K+LL
Sbjct: 167 PKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDP--DEAYRKYKELGVKVLL 224
Query: 305 VTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDA 364
G G Y + KV D TGAGDA +AG L LQ +D + +
Sbjct: 225 YKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDA-MAGTFVSL-----YLQGKD-IEYS 277
Query: 365 LRFANACGALTVMERGAIPALPTRE 389
L A L + RG PT E
Sbjct: 278 LAHGIAASTLVITVRGDNELTPTLE 302
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 268 DIIKISEEEISFLT----QGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRV 323
DII +E E L+ E D Y +K +L+T G G + TK+ S +
Sbjct: 181 DIIVPNETEAELLSGIKVTNEQSMKDNANY-FLSIGIKTVLITLGKQGTYFATKNQSQHI 239
Query: 324 QGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIP 383
+ KV A+D T AGD F+ +S+L+ + +D L DA+ F N +LTV + GA
Sbjct: 240 EAYKVNAIDTTAAGDTFIGAFVSRLN------KSQDNLADAIDFGNKASSLTVQKHGAQA 293
Query: 384 ALPTREAV 391
++P E V
Sbjct: 294 SIPLLEEV 301
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 99/259 (38%), Gaps = 21/259 (8%)
Query: 134 KVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLL 193
+VG DE G M+ + L+ V+ R PG T L G+ +YR SA L
Sbjct: 55 RVGEDELGAMVEERLRAEGVDLTHFRRAPGF-TGLYLREYLPLGQGRVFYYRKGSAGSAL 113
Query: 194 QEAELDLSLITKAKIFHYGSISLITEP-CXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPS 252
D + + H I+ P GV +S D N R LW S
Sbjct: 114 APGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLW-S 172
Query: 253 ADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGC 312
++AR + D++ +SEEE L V L + +++ G G
Sbjct: 173 PEEARGFLERALPGVDLLFLSEEEAELLF-------GRVEEALRALSAPEVVLKRGAKGA 225
Query: 313 RYYTKDFSGRVQG--LKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANA 370
+ RV+G VEAVD GAGDAF AG L+ + ++ LR AN
Sbjct: 226 WAFVD--GRRVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLPVEER-------LRLANL 276
Query: 371 CGALTVMERGAIPALPTRE 389
GA RG P RE
Sbjct: 277 LGASVAASRGDHEGAPYRE 295
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 9/219 (4%)
Query: 135 VGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADM-LL 193
+G D + + ++G G+R PG L +TL GER F ++R SA L
Sbjct: 75 IGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITL-EQGERSFAYWRGQSAARELA 133
Query: 194 QEAELDLSLITKAKIFHYGSISL-ITEPCXXXX-XXXXXXXXXXGVVLSYDPNLRLPLWP 251
+A+ + + +A + ++ I+L I + C G +++DPNLR LW
Sbjct: 134 GDADALAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRPRLWA 193
Query: 252 SADKAREGILSIWETADIIKIS-EEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPD 310
+ E I+ +DI S E+E ++ D DA + A ++ ++V GP
Sbjct: 194 GTGEMTETIMQGAAVSDIALPSFEDEAAWFG---DAGPDATADRYARAGVRSVVVKNGPH 250
Query: 311 GCRYYTKDFSGR-VQGLKVEAVDATGAGDAFVAGILSQL 348
+ GR + VD T AGD+F AG+L +
Sbjct: 251 AVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGLLDSV 289
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 114/261 (43%), Gaps = 10/261 (3%)
Query: 134 KVGADEFGYMLADILKENNVNGAGMRFDP-GARTALAFVTLRSDGEREFMFYRNPSADML 192
K+ D+ G + + V+ + + D G +T LAF ++S E + YR AD+
Sbjct: 66 KIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILXYRQDVADLY 125
Query: 193 LQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPS 252
L E++ + I ++K+ +L P V + ++ + R W +
Sbjct: 126 LSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWET 185
Query: 253 ADKAREGILSIWETADIIKISEEEISFL-TQGEDPYDDAVVYKLFHANLKLLLVTEGPDG 311
++ + E +DI+ + EE L + E +D + LF + +L+++ G +G
Sbjct: 186 PEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSPELIVIKHGVEG 245
Query: 312 CRYYTKDFSG-RVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANA 370
YTK R K + + GAGD++ + L ++L+ + + AL++ +A
Sbjct: 246 SFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFL------YALISGKG-IETALKYGSA 298
Query: 371 CGALTVMERGAIPALPTREAV 391
++ V + + A P+ E +
Sbjct: 299 SASIVVSKHSSSDAXPSVEEI 319
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 114/261 (43%), Gaps = 20/261 (7%)
Query: 134 KVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLL 193
++G D G + D ++ N++ ++ D T++ + DGER F+ RN S L
Sbjct: 65 RIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSL-WKL 123
Query: 194 QEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXG--VVLSYDPNLRLPLWP 251
++D + ++AK+ SI P ++ D + P
Sbjct: 124 NIDDVDFARFSQAKLLSLASI--FNSPLLDGKALTEIFTQAKARQXIICADX-----IKP 176
Query: 252 SADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDG 311
++ + I D + + E LT G++ D+ + +K +++ G DG
Sbjct: 177 RLNETLDDICEALSYVDYLFPNFAEAKLLT-GKETLDE-IADCFLACGVKTVVIKTGKDG 234
Query: 312 CRYYTKDFSGRVQGLK-VEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANA 370
C D + +V + + A+D GAGD F +G ++ +LL+ ++ LR+ RFANA
Sbjct: 235 CFIKRGDXTXKVPAVAGITAIDTIGAGDNFASGFIA------ALLEGKN-LRECARFANA 287
Query: 371 CGALTVMERGAIPALPTREAV 391
A++V+ GA + R+ V
Sbjct: 288 TAAISVLSVGATTGVKNRKLV 308
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 17/224 (7%)
Query: 135 VGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQ 194
+G D F D NV+ + + L ++ S GER F ++RN +A
Sbjct: 56 LGTDSFSQQXLDAWHGENVDTSLTQRXENRLPGLYYIETDSTGERTFYYWRNEAAAKFWL 115
Query: 195 EAELDLSLITKAKIFHY-----GSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPL 249
+E ++ + F Y S+++++ G + +D N R L
Sbjct: 116 ASEQSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRL 175
Query: 250 WPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGP 309
W S ++ ++ E DI ++ ++ L G+ P +D V+ + +A +K ++V G
Sbjct: 176 WASKEETQQVYQQXLECTDIAFLTLDDEDAL-WGQQPVED-VIARTHNAGVKEVVVKRGA 233
Query: 310 DGCRYYTKDFSGR-------VQGLKVEAVDATGAGDAFVAGILS 346
D C +G V+ K + +D T AGD+F AG L+
Sbjct: 234 DSCLV---SIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLA 274
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 24/259 (9%)
Query: 135 VGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQ 194
VG DE G + ++ KE + R D T VTL +G + + D +
Sbjct: 47 VGNDELGDEIXEVFKEKQLKNQIERVD--YPTGTVQVTLDDEGVPCYEIKEGVAWDNIPF 104
Query: 195 EAELD-LSLITKAKIFHYGSISLITEPCXXXXXXXXXXX-XXXGVVLSYDPNLRLPLWPS 252
EL L+L T+A F GS++ E G + +D NLR +
Sbjct: 105 TDELKRLALNTRAVCF--GSLAQRNEVSRATINRFLDTXPDIDGQLKIFDINLRQDFY-- 160
Query: 253 ADKAREGILSIWETADIIKISEEEISFLTQ-----GEDPYDDAVVYKLFHANLKLLLVTE 307
+E + ++ +I+KI++EE+ +++ G D D + L NLK L++T
Sbjct: 161 ---TKEVLRESFKRCNILKINDEELVTISRXFGYPGIDLQDKCWIL-LAKYNLKXLILTC 216
Query: 308 GPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRF 367
G +G +T + KV D GAGD+F A + + S + +A +
Sbjct: 217 GINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNGKS-------VPEAHKL 269
Query: 368 ANACGALTVMERGAIPALP 386
A A + GA P LP
Sbjct: 270 AVEVSAYVCTQSGAXPELP 288
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 236 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKL 295
GV +DP LPL+ A R SI E A I +++ E + +D + ++
Sbjct: 160 GVPFIFDPGQGLPLFDGATLRR----SI-ELATYIAVNDYEAKLVCDKTGWSEDEIASRV 214
Query: 296 FHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAV-DATGAGDAFVAGILSQLSTDFSL 354
+ L++T G G +D + ++ ++ E V D TG GDAF G+L + F
Sbjct: 215 -----QALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDW 269
Query: 355 LQKEDQLRDALRFANACGALTVMERGAIPALPTREAV 391
A R A+ GAL + +G PTR +
Sbjct: 270 AT-------AGRLASLMGALKIAHQGPQTYAPTRAEI 299
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 236 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKL 295
GV +DP LPL+ A R SI E A I +++ E + +D + ++
Sbjct: 168 GVPFIFDPGQGLPLFDGATLRR----SI-ELATYIAVNDYEAKLVCDKTGWSEDEIASRV 222
Query: 296 FHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAV-DATGAGDAFVAGILSQLSTDFSL 354
+ L++T G G +D + ++ ++ E V D TG GDAF G+L + F
Sbjct: 223 -----QALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDW 277
Query: 355 LQKEDQLRDALRFANACGALTVMERGAIPALPTREAV 391
A R A+ GAL + +G PTR +
Sbjct: 278 AT-------AGRLASLMGALKIAHQGPQTYAPTRAEI 307
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 109/265 (41%), Gaps = 32/265 (12%)
Query: 134 KVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLL 193
KVG D FG + LK+N+++ A T A + + ++G+ + A++LL
Sbjct: 83 KVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIV--AGANLLL 140
Query: 194 QEAELDLS--LITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWP 251
+L + +I++AK+ + E GV ++P P
Sbjct: 141 NTEDLRAAANVISRAKV-----MVCQLEITPATSLEALTMARRSGVKTLFNP---APAIA 192
Query: 252 SADKAREGILSIWETADIIKISEEEISFLT-----QGEDPYDDAVVYKLFHANLKLLLVT 306
D + +D+ +E E LT D + A+V L +++++T
Sbjct: 193 DLDP------QFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALV--LLKRGCQVVIIT 244
Query: 307 EGPDGCRY--YTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDA 364
G +GC T+ + KV+AVD TGAGD+FV + L+ +L L D
Sbjct: 245 LGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNL-----SLEDM 299
Query: 365 LRFANACGALTVMERGAIPALPTRE 389
L +N A++V G + P ++
Sbjct: 300 LNRSNFIAAVSVQAAGTQSSYPYKK 324
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 268 DIIKISEEEISFLT--QGEDPYDDAVVYKLFH-ANLKLLLVTEGPDGCRYYTKDFSGRVQ 324
DII +E E LT + E+ D A ++ H ++ +L+T G G RV
Sbjct: 182 DIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVP 241
Query: 325 GLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPA 384
G +V+AVD AGD F +++ L +E L +A+RFA+A A+ V +GA P+
Sbjct: 242 GFRVQAVDTIAAGDTFNGALITAL-------LEEKPLPEAIRFAHAAAAIAVTRKGAQPS 294
Query: 385 LPTREAV 391
+P RE +
Sbjct: 295 VPWREEI 301
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 263 IWETADIIKISEEEISFLTQ---GEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDF 319
I++ D + +E+EI L++ GE + K +K ++V G G K+
Sbjct: 180 IFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKNE 239
Query: 320 SGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMER 379
KV+AVD T AGD F LS + +A+ F A A++V
Sbjct: 240 KKHFPTFKVKAVDTTAAGDVFNGAFAVALS-------EGKNPEEAVIFGTAAAAISVTRL 292
Query: 380 GAIPALPTREAV 391
GA ++P RE V
Sbjct: 293 GAQSSIPAREEV 304
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 238 VLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEI----SFLTQGEDPYDDAVVY 293
++S+DP LP + ++E +L I E + + +++ E + L D Y + V
Sbjct: 156 LVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLERV-- 208
Query: 294 KLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKV-EAVDATGAGDAFVAGILSQLSTDF 352
L+VT+G G YTKD + +K + +D TGAGD++ AG LS +
Sbjct: 209 -------DALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGY 261
Query: 353 SLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVL 392
L A + V +G LPT + V+
Sbjct: 262 -------DLEKCGLIGAATASFVVEAKGCQTNLPTWDKVV 294
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 102/270 (37%), Gaps = 53/270 (19%)
Query: 135 VGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQ 194
VG DE G + L E+ ++ +G PGAR+AL+ + + + GER + P D L
Sbjct: 89 VGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLIV----PFYDHRLH 144
Query: 195 EAEL-----DLSLITKAKI-FHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLP 248
E + D++L + + ++L VL+ L P
Sbjct: 145 EKKRACTPEDIALFDAVLVDVRWPELALD--------------------VLTVARALGKP 184
Query: 249 LWPSADKAR-EGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANL--KLLLV 305
D A E + + A I SE + LT E D + HA + V
Sbjct: 185 AILDGDVAPVETLEGLAPAATHIVFSEPAATRLTGLETVKD---XLPVLHARYPQTFIAV 241
Query: 306 TEGPDGCRYYTKD-----FSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKED- 359
T GP GC + D F Q VEAVD AGD F F+L E
Sbjct: 242 TAGPAGCWWTEADDPTVHFQTTXQ---VEAVDTLAAGDIF--------HGTFALAXAEGX 290
Query: 360 QLRDALRFANACGALTVMERGAIPALPTRE 389
Q R A+R ++ AL G PTRE
Sbjct: 291 QSRAAVRLSSVAAALKCTVFGGRIGAPTRE 320
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 303 LLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLR 362
++V+ G DG Y K+ S + + + V+ G+GD+ VAG+++ +++ S +
Sbjct: 214 VIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLS-------IE 266
Query: 363 DALRFANACGALTVMERGAIPALPTREAV 391
A + A ACG T + L TR+A+
Sbjct: 267 KAFQQAVACGTATAFDED----LATRDAI 291
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 22/75 (29%)
Query: 275 EEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEA-VDA 333
+ I +TQG DP +LL+ G D R + VQ L E VD
Sbjct: 274 KRIVIITQGSDP---------------VLLIEAGTDNVREFP------VQKLAPEQMVDT 312
Query: 334 TGAGDAFVAGILSQL 348
GAGDAFV G L+QL
Sbjct: 313 NGAGDAFVGGFLAQL 327
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 288 DDAV--VYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGIL 345
+DA+ V +L ++ +LV+ DG + + + V E ++ GAGD+ VAG L
Sbjct: 197 EDAIPHVQRLIGEGIESILVSFAGDGALFASAEGXFHVNVPSGEVRNSVGAGDSVVAGFL 256
Query: 346 SQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAV 391
+ LQ+ L DA+ FA A G+ T G TRE V
Sbjct: 257 -------AALQEGKSLEDAVPFAVAAGSATAFSDG----FCTREEV 291
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 29/240 (12%)
Query: 135 VGADEFGYMLADILKENNVNGAGM-RFDPGARTALAFVTLRSDGEREFMFYRNPSADMLL 193
+G D+FG +L E +V+ + + T A +T G+ + +A+
Sbjct: 90 IGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACIT----GDNRSLIANLAAANCYK 145
Query: 194 QEAELDLS----LITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPL 249
+E LDL L+ KA++ + L P L NL P
Sbjct: 146 KEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTL----NLSAPF 201
Query: 250 WPSADKAREGILSIWETADIIKISEEEISFLT--QGEDPYDDAVVYKLFHA-------NL 300
K E ++ + DI+ +E E + QG + D + K A
Sbjct: 202 ISQFYK--ESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALPKMNSKRQ 259
Query: 301 KLLLVTEGPDGCRYYTKD----FSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQ 356
++++ T+G D T+ F+ Q K E +D GAGDAFV G LSQL +D L +
Sbjct: 260 RIVIFTQGRDDTIMATESEVTAFAVLDQDQK-EIIDTNGAGDAFVGGFLSQLVSDKPLTE 318
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 315 YTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGAL 374
YT++ + + + +D GAGDA+ AGIL S ++S L A+ FA G L
Sbjct: 257 YTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWS-------LEKAVTFATVNGVL 309
Query: 375 TVMERGAIPALPTREAVLNAIHAP 398
+G IP L T + V + + P
Sbjct: 310 AHTIQGDIP-LTTVKQVNHVLEHP 332
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 300 LKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKED 359
+K + ++ DG Y G+++ +V+ + TGAGD+FVAG+ + K
Sbjct: 219 IKKVFISLDADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGL------GYGYXNKX- 271
Query: 360 QLRDALRFANACGALTVMERGAI 382
+ D ++FA +T+ I
Sbjct: 272 PIEDIVKFAXTXSNITISHEETI 294
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 261 LSIWETADIIKISEEE-ISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDG--CRYYTK 317
L++ D IK +E+E I+ L + + ++ + + + L+V+ G G C + K
Sbjct: 177 LAVEMGVDFIKPNEDEVIAILDEKTNSLEENI--RTLAEKIPYLVVSLGAKGSICAHNGK 234
Query: 318 DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 377
+ +V KV+ + TGAGD FV ++ L+ + + + L+ A C A VM
Sbjct: 235 LY--QVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITE-------TLKVATGCSASAVM 285
Query: 378 ER 379
++
Sbjct: 286 QQ 287
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 303 LLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLR 362
++T G G RY D V V VD GAGD F AG+L+ + + ++LR
Sbjct: 213 FVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVF-AGVLAA-NWPRNPGSPAERLR 270
Query: 363 DALRFANACGALTVMERG 380
ALR A A GAL + G
Sbjct: 271 -ALRRACAAGALATLVSG 287
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 261 LSIWETADIIKISEEE-ISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDG--CRYYTK 317
L++ D IK +E+E I+ L + + ++ + + + L+V+ G G C + K
Sbjct: 177 LAVEXGVDFIKPNEDEVIAILDEKTNSLEENI--RTLAEKIPYLVVSLGAKGSICAHNGK 234
Query: 318 DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 377
+ +V KV+ + TGAGD FV ++ L+ + + + L+ A C A V
Sbjct: 235 LY--QVIPPKVQERNDTGAGDVFVGAFIAGLAXNXPITE-------TLKVATGCSASKVX 285
Query: 378 ER 379
++
Sbjct: 286 QQ 287
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 263 IWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGR 322
+W DI ++E E L PY +K L++T+G G +
Sbjct: 174 LWPLIDIAVVNESEAELL----QPY-----------GVKTLVITQGAAGAWLVQEGQRQF 218
Query: 323 VQGLKVEAVDATGAGDAF 340
+ EA+D TGAGD F
Sbjct: 219 CPAVPAEALDTTGAGDTF 236
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 18/95 (18%)
Query: 268 DIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGC-------RYYTKDFS 320
DI+ + +E L Q +D +++A+ A+ K+ VT +G RYY
Sbjct: 232 DIVFANRQEALSLYQTDD-FEEAL--NRIAADCKIAAVTXSENGAVILKGRERYY----- 283
Query: 321 GRVQGLKV-EAVDATGAGDAFVAGILSQLSTDFSL 354
V +++ E VD TGAGD F +G L + SL
Sbjct: 284 --VNAIRIREVVDTTGAGDLFASGFLYGYTQGRSL 316
>pdb|2AWD|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2AWD|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2F02|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
pdb|2F02|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
Length = 323
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 298 ANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTD 351
A ++ ++++ G DG D RV+ ++A + G+GDA +AG+ L+ D
Sbjct: 217 AGIEWIVISLGKDGAIAKHHDQFYRVKIPTIQAKNPVGSGDATIAGLAYGLAKD 270
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 290 AVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLS 349
AV LF ++ ++V+ G G RV + ++ G+GD+ VAGI S
Sbjct: 227 AVSQPLFEG-IEWIIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGITS--- 282
Query: 350 TDFSLLQKEDQLRDALRFANACGALTVME 378
++L E+ D L+ AN G L E
Sbjct: 283 ---AILNHEND-HDLLKKANTLGXLNAQE 307
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 331 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 380
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 311 VDTNGAGDAFVGGFLYALS-------QGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 290 AVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLS 349
AV LF ++ ++V+ G G RV + ++ G+GD+ VAGI S
Sbjct: 227 AVSQPLFEG-IEWIIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGITS--- 282
Query: 350 TDFSLLQKEDQLRDALRFANACGALTVME 378
++L E+ D L+ AN G L E
Sbjct: 283 ---AILNHEND-HDLLKKANTLGXLNAQE 307
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 331 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 380
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 331 VDTNGAGDAFVGGFLYALS-------QGKTVKQCIMCGNACAQDVIQHVG 373
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 331 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 380
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 311 VDTNGAGDAFVGGFLYGLS-------QGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 331 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 380
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 311 VDTNGAGDAFVGGFLYGLS-------QGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 265 ETADIIKISEEEISFLTQGEDPYDD 289
+T+ K EE+I++ QGEDPY D
Sbjct: 289 DTSQFDKYPEEDINYGVQGEDPYAD 313
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 301 KLLLVTEGPDGCRYYTKDFSGRVQGLKVEAV-DATGAGDAFVAGILSQLSTDFSLLQKED 359
K L++ +G G +T + +E++ D TGAGD F G + L+ + E
Sbjct: 201 KTLIIKKGEHGALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGN--TSEA 258
Query: 360 QLRDALRFANACGALTVMERG 380
+ R A+ + +A + V + G
Sbjct: 259 EXRKAVLYGSAXASFCVEQFG 279
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 266 TADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQG 325
T DI+ + +E L + ED +D A+ +L + KL VT +G RV
Sbjct: 210 TVDIVFANRQEALALYETED-FDRAL--ELLARDCKLAAVTLSEEGSVVVRGAERVRVGA 266
Query: 326 LKVE-AVDATGAGDAFVAGILSQLSTDFSL 354
+E VD TGAGD + AG L ++ SL
Sbjct: 267 SVLEQVVDTTGAGDLYAAGFLFGYTSGRSL 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,173,263
Number of Sequences: 62578
Number of extensions: 382039
Number of successful extensions: 798
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 58
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)