BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015779
         (400 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
          Length = 623

 Score =  228 bits (581), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 129/406 (31%), Positives = 215/406 (52%), Gaps = 44/406 (10%)

Query: 2   AEILAALRSLMSSHD---PPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALIT 58
           +E+L  LR  M + +    P+ A ++PS D HQSEY++  D RR FVSGF GSAG A+IT
Sbjct: 7   SELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIIT 66

Query: 59  MNEALLWTDGRYFLQATQELTGEWKLMRM-LED-PAVDVWMANNLPNDAAIGVDPWCVSI 116
              A +WTDGRYFLQA +++   W LM+M L+D P  + W+ + LP  + +GVDP  +  
Sbjct: 67  EEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPT 126

Query: 117 DTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELR 176
           D  ++  +        L+    NLVDK+W +RP     P+    +++ G S  +K+ +LR
Sbjct: 127 DYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLR 186

Query: 177 EKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEV 236
            K+        ++T LDE+AWL+N+RG+DV + PV  ++AI+      L++D  ++ +  
Sbjct: 187 LKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPS 246

Query: 237 I--------SFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYAL 288
           +            E  ++V  Y ++ S++  L        AD+   + +W   +  SYA+
Sbjct: 247 VKEHLLLDLGLEAEYRIQVHPYKSILSELKALC-------ADLSPREKVWVS-DKASYAV 298

Query: 289 YSKLNSD-KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGA 347
              +  D +  +  +P+ +AKA+KN  E +G+++AHI+D  A+ +   WL+K++ +    
Sbjct: 299 SETIPKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPK---- 354

Query: 348 SGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKEVMLTSIFP 393
                           G V  TE++ +DK E FR  +   +   FP
Sbjct: 355 ----------------GGV--TEISAADKAEEFRRQQADFVDLSFP 382


>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
           Maritima Msb8
 pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
           Maritima Msb8
          Length = 359

 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 44  FVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPN 103
           + SGFTGS  + LI+ N  LL TD RY +QA QE   E + ++  +   V     N+L  
Sbjct: 34  YFSGFTGSFSIILISENTRLLITDSRYTVQAKQETDFEVREVKGGDFIDVLKKTVNDLKI 93

Query: 104 DAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEF 163
              I ++   VS+   +R   AF  ++   +      + ++ K+   +E      Q IE 
Sbjct: 94  -KTIALEEERVSLSLFRRISSAFGDRKFIGIDDEVKQM-RMVKDEGEIEKIK---QAIEI 148

Query: 164 AGSSVVEKLKELREKLTNEK 183
           +  + +E ++++R  +T ++
Sbjct: 149 SERAFLETVQQIRAGMTEKE 168


>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
 pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
 pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
 pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
          Length = 356

 Score = 36.6 bits (83), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 39 DKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTG 80
          +  R +++ FTG+AG+ LI+   A   TD RY  QA+++  G
Sbjct: 27 EHSRRYMANFTGTAGVVLISKKRAQFITDFRYVEQASKQAVG 68


>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
          Streptococcus Pyogenes
 pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
          Streptococcus Pyogenes
 pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
          Streptococcus Pyogenes
 pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
          Streptococcus Pyogenes
          Length = 132

 Score = 33.5 bits (75), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 44 FVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTG 80
          +++GF+G+A   LIT    +L TD RY L A   + G
Sbjct: 37 YLTGFSGTAATVLITAKRRVLITDSRYTLLAKASVEG 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,589,259
Number of Sequences: 62578
Number of extensions: 465024
Number of successful extensions: 1359
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1343
Number of HSP's gapped (non-prelim): 17
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)