RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015779
(400 letters)
>gnl|CDD|216431 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 128
Score = 60.4 bits (147), Expect = 2e-11
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 5 LAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLAL-ITMNEAL 63
L LR LM+ L AL++ S + +++GFTGS GLAL +T + A
Sbjct: 2 LERLRELMAEAG--LDALLLTSPE------------NIRYLTGFTGSRGLALVVTADGAT 47
Query: 64 LWTD-GRYFLQATQELTG----EWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDT 118
L TD RY A + + E+ L D + +G + +++
Sbjct: 48 LLTDALRYTEAAEESVPDLEVIEYDDAEALAD-----LLKELGLELKRLGFEGDHLTVAE 102
Query: 119 AQRWERAFAKKQQKLVQTSTNLVDKV 144
+R + A + LV S L++++
Sbjct: 103 YERLKEALPDAE--LVDAS-GLIEEL 125
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 56.0 bits (136), Expect = 4e-09
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 21/76 (27%)
Query: 318 GLKKAHIRDGAAIVQYIIWLDKQMQEIYGASGYFLEGEATKEKKHSGTVKLTEVTVSDKL 377
G++ AHIRDG A+V+++ WL++++ + +TE++ +DKL
Sbjct: 1 GMRAAHIRDGVALVEFLAWLEQEVPKGE---------------------TITELSAADKL 39
Query: 378 ESFRASKEVMLTSIFP 393
E FR ++ + F
Sbjct: 40 EEFRRQQKGYVGLSFD 55
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 49.0 bits (117), Expect = 3e-06
Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 14/197 (7%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWL--YNIRGTDVPYCPVVHAFAIVTTNAAFLYV 227
+L LRE + +++T+ +L ++ G + +V A L+V
Sbjct: 12 ARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVPA-----EGEPVLFV 66
Query: 228 DKRKVSS-EVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLI----WADPN 282
R + + S++K VEV + D + + L L I
Sbjct: 67 RGRDEEAAKETSWIKLENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIGIESASIFLTL 126
Query: 283 SCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQ 342
+ L + L +++ + + IK+P E+ ++KA AA+ + + M
Sbjct: 127 AAFERLQAALPRAELVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMT 186
Query: 343 EIYGASGYFLEGEATKE 359
E A+ LE K
Sbjct: 187 EAEIAA--ELEYALRKG 201
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 33.0 bits (75), Expect = 0.27
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 35 VSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVD 94
+S+R ++ + G + +G +I+ A + D RY+ A E + + +L+
Sbjct: 21 LSSRQNKQPHL-GISTGSGYVVISRESAHILVDSRYY--ADVEARAQGYQLHLLDATNTL 77
Query: 95 VWMANNLPND---AAIGVDPWCVSIDTAQRWE 123
+ N + D +G + VS +TA RW+
Sbjct: 78 TTIVNQIIADEQLQTLGFEGQQVSWETAHRWQ 109
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase. Members
of this family are N-carbamoylputrescine amidase
(3.5.1.53). Bacterial genes are designated AguB. The
AguAB pathway replaces SpeB for conversion of agmatine
to putrescine in two steps rather than one [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 279
Score = 32.3 bits (74), Expect = 0.33
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 106 AIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAG 165
AIG +P +D+ W+R Q + NLV V NR + T + F G
Sbjct: 175 AIGSEPHDPDLDSRDHWQRV----MQG--HAAANLVPVVAANR--IGTEIGDGGEQTFYG 226
Query: 166 SSVV-----EKLKELREKLTNEKARGIIITTLD 193
SS + E + E +++ T D
Sbjct: 227 SSFIADHTGELVAEA-----GRSEEAVLVATFD 254
>gnl|CDD|182270 PRK10151, PRK10151, ribosomal-protein-L7/L12-serine
acetyltransferase; Provisional.
Length = 179
Score = 31.3 bits (71), Expect = 0.61
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 1 MAEILA-----ALRSLMSSHDPPLHALVVPSEDYHQS-----EYVSARDKRREFVSG 47
M EI+ L ++ SH PLH LV ++ + Q ++V + + R+ V G
Sbjct: 1 MTEIIPVSESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQG 57
>gnl|CDD|236061 PRK07582, PRK07582, cystathionine gamma-lyase; Validated.
Length = 366
Score = 30.0 bits (68), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQ 31
MA I A LR+L+ P +VVP++ Y+Q
Sbjct: 75 MAAITAVLRALL----RPGDTVVVPADGYYQ 101
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 29.8 bits (68), Expect = 3.1
Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYN-IRGTDVPYCPVVHAFAIVTTNAAFLYVD 228
+KL+EL E+ E+ +LD+ + + VD
Sbjct: 509 KKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEKDKETEEDEPEGPKIIVD 568
Query: 229 KRKVSSEVISFLKESGVEVR-------DYDAVSSDVV 258
R++ S V LK G EV DY VS V
Sbjct: 569 SRELRSNVARHLKRLGAEVELKTLEVGDY-VVSDRVA 604
>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional.
Length = 493
Score = 29.4 bits (66), Expect = 3.4
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 152 ETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIIITTLDEVA-WLYNIRGTDVPYCP 210
TY QQ G S +K ++ +K+ ++ +G ++ VA W YN D P
Sbjct: 122 ATYQQQFQQFLTEGQSQSQKFRDEHQKI-HQFRQGDVVALPAGVAHWFYN--DGDA---P 175
Query: 211 VVHAFAIVTTNAA 223
VV + N A
Sbjct: 176 VVALYVYDINNNA 188
>gnl|CDD|217555 pfam03433, EspA, EspA-like secreted protein. EspA is the
prototypical member of this family. EspA, together with
EspB, EspD and Tir are exported by a type III secretion
system. These proteins are essential for attaching and
effacing lesion formation. EspA is a structural protein
and a major component of a large, transiently expressed,
filamentous surface organelle which forms a direct link
between the bacterium and the host cell.
Length = 188
Score = 29.0 bits (65), Expect = 3.4
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 229 KRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYAL 288
K K+ +VI ++K++G+ V D S L + P + DL + AL
Sbjct: 96 KVKLPQDVIKYMKDNGILV---DGKSILDYLDK----YPDKGLDKGDL-----QAVKAAL 143
Query: 289 YSKLNSDKVLLQQSPLALAKAIKN 312
+ N + QS L + K +
Sbjct: 144 ENDSNRATDFVSQSQLQIQKMSQT 167
>gnl|CDD|132526 TIGR03487, cas_csp2, CRISPR-associated protein Cas8c/Csp2, subtype
PGING. Members of this protein family are cas, or
CRISPR-associated, proteins. The two sequences in the
alignment seed are found within cas gene clusters that
are adjacent to CRISPR DNA repeats in two members of the
order Bacteroidales, Porphyromonas gingivalis W83 and
Bacteroides forsythus ATCC 43037. This cas protein
family is unique to the Pging (Porphyromonas gingivalis)
subtype.
Length = 489
Score = 29.6 bits (66), Expect = 3.5
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 281 PNSCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQ 340
+ + LNS ++ Q+ A K D ++ + G + +II DK
Sbjct: 25 LEEIKFEIEKALNSFRIQAQEP---FAGGSKAQFSFDKIEDGDTKKGIFLSPHIISKDKH 81
Query: 341 MQEIYGASGYFLEGE--ATKEKKHSGTVKLTEVTVSD 375
Q+++GA+ FLE + K +K E+ +S+
Sbjct: 82 AQKLWGAAAKFLEIDYLGKDNDKCDDLLKKDEIGMSE 118
>gnl|CDD|215748 pfam00147, Fibrinogen_C, Fibrinogen beta and gamma chains,
C-terminal globular domain.
Length = 221
Score = 28.9 bits (65), Expect = 3.8
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 28 DYHQSEYVSARDKRREFVSGFTGSAGLALITMNEALLWTDGRYF 71
Y + +K R VSG++G+AG AL+T +++ + +G +F
Sbjct: 108 LYDKFTVGDEANKYRLSVSGYSGTAGNALMTAGDSMTYHNGMFF 151
>gnl|CDD|224859 COG1948, MUS81, ERCC4-type nuclease [DNA replication,
recombination, and repair].
Length = 254
Score = 28.8 bits (65), Expect = 4.7
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 224 FLYVDKRKVSSEVISFLKESGV-------EVRDYDAVSSDVVL 259
+ VD R++ SEV LK GV EV DY VS DV++
Sbjct: 29 VVIVDSRELRSEVPRLLKRLGVKVEVRTLEVGDY-VVSDDVIV 70
>gnl|CDD|181502 PRK08611, PRK08611, pyruvate oxidase; Provisional.
Length = 576
Score = 28.8 bits (65), Expect = 5.7
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 40 KRREFVSGFTGSAGLALITMNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVD----- 94
KR G G A AL + E + + R FL+A QE +W M ED
Sbjct: 302 KRYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWW-KWMEEDENNASTPIK 360
Query: 95 --VWMAN---NLPNDAAIGVD 110
MA +DA + VD
Sbjct: 361 PERVMAAIQKIADDDAVLSVD 381
>gnl|CDD|150843 pfam10232, Med8, Mediator of RNA polymerase II transcription
complex subunit 8. Arc32, or Med8, is one of the
subunits of the Mediator complex of RNA polymerase II.
The region conserved contains two alpha helices
putatively necessary for binding to other subunits
within the core of the Mediator complex. The N-terminus
of Med8 binds to the essential core Head part of
Mediator and the C-terminus hinges to Med18 on the
non-essential part of the Head that also includes Med20.
Length = 226
Score = 27.9 bits (62), Expect = 7.4
Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 84 LMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDK 143
L+R DP V+ WM DTA + E QQ + +N +DK
Sbjct: 94 LLRTKPDPEVEEWMKQARQKAENSTK-------DTAAKQEVEIDILQQN--KEVSNWLDK 144
Query: 144 VWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTN 181
V K R ++ EF S VE + E+ TN
Sbjct: 145 VTKLR----------EEWEFESSHRVEIEQTSEEEDTN 172
>gnl|CDD|235191 PRK03995, PRK03995, hypothetical protein; Provisional.
Length = 267
Score = 28.0 bits (63), Expect = 7.5
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 211 VVHAFAIVTTNAAFLYVDKRKVSSEV----ISFLKESGVEVR 248
++ A T + +D + V SE I FL+E G+EV
Sbjct: 224 LIQAIEKSTPEIDRIVIDWKGVKSEDRERIIEFLEELGIEVE 265
>gnl|CDD|235953 PRK07188, PRK07188, nicotinate phosphoribosyltransferase;
Provisional.
Length = 352
Score = 28.4 bits (64), Expect = 8.1
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 15/61 (24%)
Query: 134 VQTSTNLVDKVWKNRPPV----ETYPVTVQQIEFAGSSVVEKLKELREKLTNEKARGIII 189
V TS N++DK + P V + V + I K LR+ L + + I
Sbjct: 235 VDTSKNMIDKYFIRHPEVLGTFDPRGVNPELI-----------KALRKALDENGGKHVKI 283
Query: 190 T 190
Sbjct: 284 I 284
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.385
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,480,908
Number of extensions: 1988653
Number of successful extensions: 2094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2088
Number of HSP's successfully gapped: 27
Length of query: 400
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 301
Effective length of database: 6,546,556
Effective search space: 1970513356
Effective search space used: 1970513356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.2 bits)