RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015779
(400 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 449 bits (1158), Expect = e-155
Identities = 123/398 (30%), Positives = 209/398 (52%), Gaps = 44/398 (11%)
Query: 2 AEILAALRSLMSSHD---PPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALIT 58
+E+L LR M + + P+ A ++PS D HQSEY++ D RR FVSGF GSAG A+IT
Sbjct: 7 SELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIIT 66
Query: 59 MNEALLWTDGRYFLQATQELTGEWKLMRML--EDPAVDVWMANNLPNDAAIGVDPWCVSI 116
A +WTDGRYFLQA +++ W LM+M + P + W+ + LP + +GVDP +
Sbjct: 67 EEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPT 126
Query: 117 DTAQRWERAFAKKQQKLVQTSTNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELR 176
D ++ + L+ NLVDK+W +RP P+ +++ G S +K+ +LR
Sbjct: 127 DYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLR 186
Query: 177 EKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEV 236
K+ ++T LDE+AWL+N+RG+DV + PV ++AI+ L++D ++ +
Sbjct: 187 LKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPS 246
Query: 237 I--------SFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYAL 288
+ E ++V Y ++ S++ L AD+ + +W + SYA+
Sbjct: 247 VKEHLLLDLGLEAEYRIQVHPYKSILSELKAL-------CADLSPREKVW-VSDKASYAV 298
Query: 289 YSKLNSD-KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIWLDKQMQEIYGA 347
+ D + + +P+ +AKA+KN E +G+++AHI+D A+ + WL+K++ +
Sbjct: 299 SETIPKDHRCCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKG--- 355
Query: 348 SGYFLEGEATKEKKHSGTVKLTEVTVSDKLESFRASKE 385
+TE++ +DK E FR +
Sbjct: 356 -------------------GVTEISAADKAEEFRRQQA 374
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 96.7 bits (241), Expect = 2e-24
Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
+ AL + +++ + A++V ++SGFTGS +I +
Sbjct: 10 FLQRRRALSAQLAAKR--IDAMLVTH------------LTHIRYLSGFTGSNAALIINKD 55
Query: 61 E-ALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTA 119
A + TDGRY Q +++ + L + +++ +G + +S+
Sbjct: 56 LSARISTDGRYITQIAEQVPD----IESLMARNCAPALLSDINGPKRVGFEADYLSVSQC 111
Query: 120 QRWERAFAKKQQKLVQTSTNLVDK 143
+ ++ + L+ + ++K
Sbjct: 112 EELRKSAGSDVE-LIPVT-GAIEK 133
Score = 33.9 bits (78), Expect = 0.025
Identities = 17/127 (13%), Positives = 49/127 (38%), Gaps = 28/127 (22%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTN-AAFLYVD 228
++ + L +L ++ +++T L + +L G++ A I+ + +A + D
Sbjct: 12 QRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSN--------AALIINKDLSARISTD 63
Query: 229 KR---KVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCS 285
R +++ +V +E + ++ +D+ G + + + S
Sbjct: 64 GRYITQIAEQV------PDIESLMARNCAPALL----------SDINGPKRVGFEADYLS 107
Query: 286 YALYSKL 292
+ +L
Sbjct: 108 VSQCEEL 114
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 88.6 bits (220), Expect = 1e-21
Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 22/144 (15%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
+ + L M+ L AL+V +++GF+G+A LIT
Sbjct: 8 LEQRLGHCLRQMAEKG--LEALLVTH------------LTNSYYLTGFSGTAATVLITAK 53
Query: 61 EALLWTDGRYFLQATQELTG-EWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTA 119
+L TD RY L A + G + R ++ A+ + +G + VS
Sbjct: 54 RRVLITDSRYTLLAKASVEGFDIIESRTPLKVVAELLEADQI---DCLGFEDQ-VSFSFY 109
Query: 120 QRWERAFAKKQQKLVQTSTNLVDK 143
Q + + L+ S V+
Sbjct: 110 QAMQAELSGIT--LLAQS-GFVEH 130
Score = 38.5 bits (90), Expect = 6e-04
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
++L ++ + +++T L +L GT A ++T L D
Sbjct: 10 QRLGHCLRQMAEKGLEALLVTHLTNSYYLTGFSGTA--------ATVLITAKRRVLITDS 61
Query: 230 R 230
R
Sbjct: 62 R 62
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 79.7 bits (197), Expect = 3e-18
Identities = 29/143 (20%), Positives = 47/143 (32%), Gaps = 20/143 (13%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
M L + + L AL+V +++ F G+ IT N
Sbjct: 4 MQRRLERFDAKLVQSG--LDALLVTG------------QNNIYYLTDFWGTNATVFITKN 49
Query: 61 EALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQ 120
L TD RY L A Q + G + + ++ + IG D VS Q
Sbjct: 50 RRLFLTDSRYTLIAKQSVHGFDIIESKDPLKDIVKFVEVD--KLETIGFDNQ-VSFAYYQ 106
Query: 121 RWERAFAKKQQKLVQTSTNLVDK 143
+ F L + N +++
Sbjct: 107 ALQAIFEGY--TLSPQT-NFMEE 126
Score = 38.5 bits (90), Expect = 8e-04
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
+L+ KL +++T + + +L + GT+ A +T N D
Sbjct: 6 RRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTN--------ATVFITKNRRLFLTDS 57
Query: 230 R 230
R
Sbjct: 58 R 58
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 63.0 bits (154), Expect = 4e-11
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 13/139 (9%)
Query: 5 LAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMNEALL 64
L L+S + A ++ ++ + SGFTGS + LI+ N LL
Sbjct: 4 SERLIQLISEEG--IDAFLI-------MNIENSARASSVYFSGFTGSFSIILISENTRLL 54
Query: 65 WTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQRWER 124
TD RY +QA QE E + ++ D + N I ++ VS+ +R
Sbjct: 55 ITDSRYTVQAKQETDFEVREVKG-GDFIDVLKKTVNDLKIKTIALEEERVSLSLFRRISS 113
Query: 125 AFAKKQQKLVQTSTNLVDK 143
AF + K + + V +
Sbjct: 114 AFGDR--KFIGID-DEVKQ 129
Score = 46.4 bits (111), Expect = 8e-06
Identities = 32/200 (16%), Positives = 68/200 (34%), Gaps = 37/200 (18%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYC---PVVHAFAIVTTNAAFLY 226
++ + L + ++ E +I + N Y + +++ N L
Sbjct: 2 DRSERLIQLISEEGIDAFLIMN------IENSARASSVYFSGFTGSFSIILISENTRLLI 55
Query: 227 VDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSY 286
D R + +E+ EVR+ + L + I + S
Sbjct: 56 TDSR----YTVQAKQETDFEVREVKGGDFI------DVLKKTVNDLKIKTIALEEERVSL 105
Query: 287 ALYSKLNS--DKVLLQQSPLALAK--AIKNPVELDGLKKA-HIRDGA--AIVQYI----- 334
+L+ +++S + + +K+ E++ +K+A I + A VQ I
Sbjct: 106 SLFRRISSAFGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMT 165
Query: 335 -----IWLDKQMQEIYGASG 349
L+ M++ GA G
Sbjct: 166 EKEIAALLEYTMRK-EGAEG 184
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 58.4 bits (142), Expect = 1e-09
Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 17/127 (13%)
Query: 1 MAEILAALRSLMSSHDPPLHALVV-PSEDYHQSEYVSARDKRREFVSGFTGSAGLALITM 59
E + LRS + +++ R +++ FTG+AG+ LI+
Sbjct: 3 AMEKIERLRSAFDEAG--IDGILLTNEHS-------------RRYMANFTGTAGVVLISK 47
Query: 60 NEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTA 119
A TD RY QA+++ G +++++ +V +G + ++ +
Sbjct: 48 KRAQFITDFRYVEQASKQAVG-YEIVQHAGLIIDEVAKQVKELGIQKLGFEQDTLTYSSY 106
Query: 120 QRWERAF 126
+ A
Sbjct: 107 SAHKEAI 113
Score = 48.7 bits (117), Expect = 2e-06
Identities = 36/196 (18%), Positives = 74/196 (37%), Gaps = 35/196 (17%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
EK++ LR GI++T ++ N GT +++ A D
Sbjct: 5 EKIERLRSAFDEAGIDGILLTNEHSRRYMANFTGTA--------GVVLISKKRAQFITDF 56
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALY 289
R +++++ + Y+ V +++ ++ G + + ++ +Y+ Y
Sbjct: 57 R--------YVEQASKQAVGYEIVQHAGLIID--EVAKQVKELGIQKLGFEQDTLTYSSY 106
Query: 290 SKLNS--DKVLLQQSP-LALAKAIKNPVELDGLKKA-HIRDGA--AIVQYI--------- 334
S D + S + + IK E+ LK+A I D A I+ +I
Sbjct: 107 SAHKEAIDAEFIPTSGLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEV 166
Query: 335 -IWLDKQMQEIYGASG 349
L+ M++ GA+
Sbjct: 167 SNELEFFMRK-QGATS 181
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 52.6 bits (127), Expect = 9e-08
Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 27/146 (18%)
Query: 1 MAEILAALRSLMSSHDPPLHALVV-PSEDYHQSEYVSARDKRREFVSGFTGSAG-LALIT 58
M E + + M + + A+++ + + ++SG + AG LIT
Sbjct: 4 MNEKVKKIIEFMDKNS--IDAVLIAKNPN-------------VYYISGASPLAGGYILIT 48
Query: 59 MNEALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDT 118
A L+ + A +E + + +++ L ++G++ +
Sbjct: 49 GESATLYVPELEYEMAKEESNIPVEKFKKMDEF------YKALEGIKSLGIES-SLPYGF 101
Query: 119 AQRWERAFAKKQQKLVQTSTNLVDKV 144
+ ++ K+ K V +++ +
Sbjct: 102 IEELKKKANIKEFKKV---DDVIRDM 124
Score = 46.8 bits (112), Expect = 7e-06
Identities = 32/197 (16%), Positives = 68/197 (34%), Gaps = 41/197 (20%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
EK+K++ E + ++I V ++ + ++T +A LYV +
Sbjct: 6 EKVKKIIEFMDKNSIDAVLIAKNPNVYYISGASPLA-------GGYILITGESATLYVPE 58
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALY 289
E +ES + V + + ++G + + +S Y
Sbjct: 59 L----EYEMAKEESNIPVEKFKKMD-----------EFYKALEGIKSLGIE-SSLPYGFI 102
Query: 290 SKLNSDKVLLQQSP----LALAKAIKNPVELDGLKKA-HIRDGA--AIVQYI-------- 334
+L + + + + IK+ E+ ++KA I D A A ++ I
Sbjct: 103 EELKKKANIKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKERE 162
Query: 335 --IWLDKQMQEIYGASG 349
++ M+ GA
Sbjct: 163 VAAKVEYLMKM-NGAEK 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 2e-07
Identities = 61/446 (13%), Positives = 123/446 (27%), Gaps = 158/446 (35%)
Query: 3 EILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMNEA 62
+L L+ L+ DP + S + S + + R L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRL---------LKSKPYENC 246
Query: 63 LLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQRW 122
LL +V +
Sbjct: 247 LLVLL--------------------------NVQ-------------NAKAW-------- 259
Query: 123 ERAFAKKQQKLVQT-STNLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTN 181
AF + L+ T + D + T ++ L LT
Sbjct: 260 -NAFNLSCKILLTTRFKQVTDFL----SAATTTHIS--------------LDHHSMTLTP 300
Query: 182 EKARGIIITTLDEVAWLYNIRGTDVPY--CPVVHAFAI----------VTTNAAFLYVDK 229
++ + +++ +L + R D+P + + + T + +V+
Sbjct: 301 DEVKSLLLK------YL-DCRPQDLPREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 230 RKVSSEVISFLKE-SGVEVRD-YDAVSSDVVLLQSNQLNPPADVQGSDLIWAD-PNSCSY 286
K+++ + S L E R +D + + + + P + LIW D S
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFD----RLSVFPPS-AHIPTILLS--LIWFDVIKSDVM 405
Query: 287 ALYSKLNSDKVLLQQSPLALAKAI-----KNPVELDGLKKAHIRDGAAIVQYII------ 335
+ +KL+ L+++ P +I + V+L+ H + Y I
Sbjct: 406 VVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNIPKTFDS 461
Query: 336 ------WLDKQMQEIYGASGYFLEGEATKEK------------------KHSGTVKLTEV 371
+LD Q Y G+ L+ E+ +H T
Sbjct: 462 DDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 372 TVSDKLESFRASKEVMLTSIFPKYII 397
++ + L+ + + YI
Sbjct: 519 SILNTLQQLK---------FYKPYIC 535
Score = 39.5 bits (91), Expect = 0.002
Identities = 57/380 (15%), Positives = 114/380 (30%), Gaps = 108/380 (28%)
Query: 72 LQATQELTGEWKLMRMLEDP---AVDVWMANNLPNDAAIGVDPWCVSIDTAQRWERAFAK 128
+ + ++G +L L V ++ L + + +
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-----KFL--------MSPIKTE 101
Query: 129 KQQKLVQTST--NLVDKVWKNRPPVETYPVTVQQIEFAGSSVVEKLKELREKLTN-EKAR 185
++Q + T D+++ + Y V+ + +LR+ L A+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----------QPYLKLRQALLELRPAK 151
Query: 186 GIII--------TTL---------------DEVAWLYNIRGTDVPYCPVVHAFAIVTTNA 222
++I T + ++ WL ++ C +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------NLKNCNSPETVLEMLQK- 204
Query: 223 AFLYVDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPA-----DVQGSDLI 277
L ++ S S ++ +++ L ++ +VQ +
Sbjct: 205 --LL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 278 WADPNSCSYALYSKLNSDKVLL----QQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQY 333
A SC K+LL +Q L+ A + LD D
Sbjct: 260 NAFNLSC-----------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLL 307
Query: 334 IIWLDKQMQE--------------IYGASGYFLEGEATKEK-KHSGTVKLTEVTVS--DK 376
+ +LD + Q+ I S +G AT + KH KLT + S +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 377 LES--FRASKEVMLTSIFPK 394
LE +R + + S+FP
Sbjct: 366 LEPAEYRKMFDRL--SVFPP 383
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 48.5 bits (116), Expect = 2e-06
Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 10/126 (7%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGSAGLALITMN 60
M LR+ M+ B + A++ YH Y S ++ + G +I
Sbjct: 24 MTRRZBRLRAWMAKSB--IDAVLF--TSYHNINYYSG------WLYCYFGRKYAZVIBZV 73
Query: 61 EALLWTDGRYFLQATQELTGEWKLMRMLEDPAVDVWMANNLPNDAAIGVDPWCVSIDTAQ 120
+A+ + G + G+ + + + + IG++ V++B +
Sbjct: 74 KAVTISKGIDGGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRR 133
Query: 121 RWERAF 126
Z+A
Sbjct: 134 ZLZKAL 139
Score = 35.0 bits (81), Expect = 0.036
Identities = 25/200 (12%), Positives = 51/200 (25%), Gaps = 32/200 (16%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFA-IVTTNAAFLYVD 228
+ LR + ++ T+ + + + YC +A ++ A
Sbjct: 26 RRZBRLRAWMAKSBIDAVLFTSYHNINYY-----SGWLYCYFGRKYAZVIBZVKAVTISK 80
Query: 229 KRKVSSEVISFLKES-GVEVRDYDAVSSDVVLLQSNQLNPPADVQG--SDLIWADPNSCS 285
+ + S G + D D +L A G D + B
Sbjct: 81 GI----DGGMPWRRSFGBNIVYTDW-KRDNFYSAVKKLVKGAKZIGIEHDHVTLB----H 131
Query: 286 YALYSKLNSDKVLLQQSPLALA-KAIKNPVELDGLKKA-HIRDGA--AIVQYI------- 334
K + + + IK+ E B +++ I D A I
Sbjct: 132 RRZLZKALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVPEY 191
Query: 335 ---IWLDKQMQEIYGASGYF 351
I M +
Sbjct: 192 EVAIATTBAMVRZIARBFPY 211
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 46.2 bits (110), Expect = 1e-05
Identities = 19/149 (12%), Positives = 47/149 (31%), Gaps = 22/149 (14%)
Query: 1 MAEILAALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGFT----GSAGLAL 56
A A LR+ +++ + + A + YH Y S F G +
Sbjct: 23 YANRQARLRAHLAAEN--IDAAIF--TSYHNINYYS----------DFLYCSFGRPYALV 68
Query: 57 ITMNEALLWTDGRYFLQATQELTGEWKLMRM-LEDPAVDVWMANNLPNDAAIGVDPWCVS 115
+T ++ + + Q + G ++ + + LP IG++ ++
Sbjct: 69 VTEDDVISISANIDGGQPWRRTVGTDNIVYTDWQRDNYFAAIQQALPKARRIGIEHDHLN 128
Query: 116 IDTAQRWERAFAKKQQKLVQTSTNLVDKV 144
+ + + + V ++
Sbjct: 129 LQNRDKLAARYPDAELVDV---AAACMRM 154
Score = 37.7 bits (88), Expect = 0.005
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 23/174 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPV-VHAFAIVTTNAAFLYVD 228
+ LR L E I T+ + + +D YC +VT +
Sbjct: 25 NRQARLRAHLAAENIDAAIFTSYHNINYY-----SDFLYCSFGRPYALVVTEDDVISISA 79
Query: 229 KRKVSSEVISFLKES-GVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYA 287
+ + + G + Y D Q P + I + + +
Sbjct: 80 NI----DGGQPWRRTVGTDNIVYTDWQRDNYFAAIQQALP-----KARRIGIEHDHLNLQ 130
Query: 288 LYSKLN---SDKVLLQQSPLALA-KAIKNPVELDGLKKA-HIRD--GAAIVQYI 334
KL D L+ + + + IK+ E ++ I D GAA+V+ +
Sbjct: 131 NRDKLAARYPDAELVDVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEAL 184
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 65/433 (15%), Positives = 125/433 (28%), Gaps = 163/433 (37%)
Query: 6 AALRSLMSSHDPPLHALVVPSEDYHQSEYVSARDKRREFVSGF-TGSAGLAL----ITMN 60
+ R L SH H L+VP+ + + A + +F + G A T
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPT-----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 61 EALLWTDGRY--FL-----QATQELTGEWKLMRMLEDPAVDVWMANN--------LPNDA 105
E L G++ ++ + + ++ + + ++ N L +
Sbjct: 59 E--LV--GKFLGYVSSLVEPSKVGQFDQ--VLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 106 AIGVDPWCVSIDTAQRWERAFAKKQQKLVQTSTN-----LVDKVWKNRPPVETYPVTVQQ 160
++ + + + + + L V + +
Sbjct: 113 DT-------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAI---- 159
Query: 161 IEFAGSSVVEK-LKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVT 219
F G + +ELR+ LY Y +V I
Sbjct: 160 --FGGQGNTDDYFEELRD--------------------LYQT------YHVLVGDL-I-- 188
Query: 220 TNAAFLYVDKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLI-W 278
K S+E L E L+++ QG +++ W
Sbjct: 189 -----------KFSAET---LSE----------------LIRTTLDAEKVFTQGLNILEW 218
Query: 279 -ADPNSCSYALYSKLNSDKVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAIVQYIIW- 336
+P++ Y L P++ P L G+ + Y++
Sbjct: 219 LENPSNTPDKDY---------LLSIPISC------P--LIGV--------IQLAHYVVTA 253
Query: 337 --LDKQMQEIY----GASGYFLEGEATKEKKHSGTVKLTEVTV--SDKLESFRASKEVML 388
L E+ GA+G HS + +T V + +D ESF S +
Sbjct: 254 KLLGFTPGELRSYLKGATG------------HSQGL-VTAVAIAETDSWESFFVSVRKAI 300
Query: 389 TSIFPKYI-ICCQ 400
T +F +I + C
Sbjct: 301 TVLF--FIGVRCY 311
Score = 45.0 bits (106), Expect = 3e-05
Identities = 37/299 (12%), Positives = 81/299 (27%), Gaps = 127/299 (42%)
Query: 173 KELREKLTNEKARGIIITTLDEV-AWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRK 231
+L + T++ A+ + + + G + IV N L +
Sbjct: 1633 MDLYK--TSKAAQDV----WNRADNHFKDTYGFSIL--------DIVINNPVNLTI---- 1674
Query: 232 VSSEVISFLKESGVEVRD-YDAVSSDVVL---LQSNQLNPPADVQGSDLIWADPNS---- 283
F E G +R+ Y A+ + ++ L++ ++ + + +
Sbjct: 1675 ------HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 284 ----------CSYALYSKLNSDKVLLQQSPLA------------LAKAIKNPVELDGLKK 321
A + L S ++ + A LA + +E ++
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM--SIE-SLVEV 1785
Query: 322 AHIRDG-------------------AAI-------------VQYIIWLDKQMQEIYGASG 349
R G AI +QY++ + + +G
Sbjct: 1786 VFYR-GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV------ERVGKRTG 1838
Query: 350 YFLE--------------GE------------ATKEKKHSGTVKLTEVTVSDKLESFRA 382
+ +E G+ K +K + + E+ S LE
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQK----IDIIELQKSLSLEEVEG 1893
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 40.3 bits (95), Expect = 8e-04
Identities = 30/193 (15%), Positives = 61/193 (31%), Gaps = 21/193 (10%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
+L G++IT ++ +L R + A + + + + +
Sbjct: 17 RRLAAAAAATEQAGLAGLVITPGYDLRYLIGSRADT---FERLTALVLPASGVPTIVLPR 73
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALY 289
+++S S + GV VRD+ L+ PA +D + A
Sbjct: 74 LELASLKESAASDLGVCVRDWVDGDDPYQLVAVALGGAPAATAVTDSMPAL----HLLPL 129
Query: 290 SKLNSDKVLLQQSPLALAKAIKNPVELDGLKKA-HIRDGA--AIVQYI----------IW 336
+ +L L + +K E+D L KA D + ++
Sbjct: 130 ADALGVLPVLATDVLRQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAAD 189
Query: 337 LDKQMQEIYGASG 349
+ + + G S
Sbjct: 190 IAEAIVA-EGHSA 201
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 36.8 bits (86), Expect = 0.009
Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 10/152 (6%)
Query: 171 KLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKR 230
+L++ L G +I+ + +L +R +V + A+
Sbjct: 2 RLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHEVG--ERLAILAVSAEGDYRFLAPSL 59
Query: 231 KVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYALYS 290
D + + + + + D + AD
Sbjct: 60 ----YENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRAD----WLIGIM 111
Query: 291 KLNSDKVLLQQSPLALAKAIKNPVELDGLKKA 322
KL S + + IK+ E+ ++ A
Sbjct: 112 KLGKFTFQPLSSLIKELRMIKDKEEVKMMEHA 143
Score = 31.1 bits (71), Expect = 0.70
Identities = 4/84 (4%), Positives = 17/84 (20%), Gaps = 21/84 (25%)
Query: 5 LAALRSLMSSHDPPLHALVV-PSEDYHQSEYVSARDKRREFVSGFTGSA-----GLALIT 58
L L+ ++ P + +++G + ++
Sbjct: 3 LEKFIHLLGERG--FDGALISPGTN-------------LYYLTGLRLHEVGERLAILAVS 47
Query: 59 MNEALLWTDGRYFLQATQELTGEW 82
+ + +
Sbjct: 48 AEGDYRFLAPSLYENVVNNFPATF 71
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; 2.00A {Streptococcus pneumoniae}
Length = 138
Score = 32.0 bits (73), Expect = 0.12
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 166 SSVVEKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPV-VHAFAIVTTN-AA 223
S+ + KL+++ L +EK +++ + +L T P F V +
Sbjct: 1 SNAMSKLQQILTYLESEKLDVAVVSDPVTINYL-----TGFYSDPHERQMFLFVLADQEP 55
Query: 224 FLYVDKRKVSSEVISFLKESGVEVRDYD 251
L+V EV V Y
Sbjct: 56 LLFVPAL----EVERASSTVSFPVVGYV 79
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 33.0 bits (75), Expect = 0.19
Identities = 15/171 (8%), Positives = 51/171 (29%), Gaps = 12/171 (7%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDK 229
+ + L + + G+++ + + + + ++ + + D
Sbjct: 81 FRHRRLTDHVVARGYAGLLMFDPLNIRYATDSTNMQLWNTHNPFRATLLCADGYMVMWDY 140
Query: 230 RKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLI--------WADP 281
+ +S +S E R + + + + L+
Sbjct: 141 K--NSPFLSEFNPLVREQRAGADLFYFDRGDKVDVAADVFANEVRILLRDHAPGLRRLAV 198
Query: 282 NSCSYALYSKLNSD--KVLLQQSPLALAKAIKNPVELDGLKKAHIRDGAAI 330
+ L + +++ + A+++K P E+ ++ A A+
Sbjct: 199 DKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACEVAV 249
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae}
PDB: 3peb_A*
Length = 132
Score = 28.9 bits (65), Expect = 1.6
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCP-VVHAFAIVTTN-AAFLYV 227
KL +R L + +A + + V +L T P F V + L+V
Sbjct: 3 SKLNRIRHHLHSVQAELAVFSDPVTVNYL-----TGFFCDPHERQMFLFVYEDRDPILFV 57
Query: 228 DKRKVSSEVISFLKESGVEVRDYD 251
EV + V Y
Sbjct: 58 PAL----EVSRAKQSVPFPVFGYI 77
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G
midwest center for structural genomics; 1.85A
{Streptococcus pyogenes m1 gas}
Length = 132
Score = 27.8 bits (62), Expect = 2.9
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 11/84 (13%)
Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWLYNIRGTDVPYCP--VVHAFAIVTTNAAFLYV 227
KL ++R L + A I + + +L T P + A L+V
Sbjct: 3 AKLDQIRLYLDQKGAELAIFSDPVTINYL-----TGFFCDPHERQLFLFVYHDLAPVLFV 57
Query: 228 DKRKVSSEVISFLKESGVEVRDYD 251
EV + V Y
Sbjct: 58 PAL----EVARASQAISFPVFGYV 77
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 28.0 bits (62), Expect = 5.3
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 17 PPLHALVVPSEDYHQSEYVSARDKRREFVSGFTGS 51
PLH +VV ++ H E E + F +
Sbjct: 229 KPLHVMVVLAKTLHFME--------FECLREFADA 255
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 291 KLNSD-KVLLQQS-PLALAKAIKNPVE 315
KL + K+ S P ALA IK +E
Sbjct: 24 KLQASLKLYADDSAP-ALA--IKATME 47
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 28.0 bits (63), Expect = 6.9
Identities = 14/84 (16%), Positives = 20/84 (23%), Gaps = 7/84 (8%)
Query: 169 VEKLKELREKLTNEKARGIIITTLDE----VAWLYNIRGTDVPYCPVVHAFAIVTTNAAF 224
V K +E+ E E WL I +
Sbjct: 249 VLKKREIYEWYKEFLGEYFSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNI 308
Query: 225 LYVDKRKVSSEVISFLKESGVEVR 248
K ++I LK +E R
Sbjct: 309 TLHPKIS---KLIEDLKNKQIETR 329
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 27.4 bits (60), Expect = 8.3
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 17 PPLHALVVPSEDYHQSE 33
P+H L++P+ E
Sbjct: 264 APMHCLLIPAPQVDDPE 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.385
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,169,879
Number of extensions: 370789
Number of successful extensions: 1053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1025
Number of HSP's successfully gapped: 38
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)