RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 015779
         (400 letters)



>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
           synthase, DHBP synthase, RibB {Archaeon
           Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 219

 Score = 27.6 bits (61), Expect = 2.1
 Identities = 11/117 (9%), Positives = 33/117 (28%), Gaps = 17/117 (14%)

Query: 58  TMNEALLWTDGRYFLQATQELTGEWKLMRMLE--------DPAVDVWMANNLPNDAAIGV 109
            +        G        ++  +  +  M++           +     N++P D     
Sbjct: 41  HIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSS- 99

Query: 110 DPWCVSIDTAQRWERAFAKKQQKLVQTSTNLVDKVWKN------RPPVETYPVTVQQ 160
             + ++I+  + +       +   ++    LV +   N      R P     +   +
Sbjct: 100 --FSITINHRKTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAE 154


>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
           303]}
          Length = 155

 Score = 27.5 bits (60), Expect = 2.1
 Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 16/127 (12%)

Query: 170 EKLKELREKLTNEKARGIIITTLDEVAWL--YNIRGTDVPYCPVVHAFAIVTTNAAFLYV 227
            +   LR  L  E     I T+   + +   +       PY  VV    +++ +A     
Sbjct: 25  NRQARLRAHLAAENIDAAIFTSYHNINYYSDFLYCSFGRPYALVVTEDDVISISANIDGG 84

Query: 228 DKRKVSSEVISFLKESGVEVRDYDAVSSDVVLLQSNQLNPPADVQGSDLIWADPNSCSYA 287
              + +    + +         + A+                 +  +  I  + +  +  
Sbjct: 85  QPWRRTVGTDNIVYTDWQRDNYFAAIQQ--------------ALPKARRIGIEHDHLNLQ 130

Query: 288 LYSKLNS 294
              KL +
Sbjct: 131 NRDKLAA 137


>d1j23a_ c.52.1.20 (A:) Putative ATP-dependent RNA helicase Hef,
           nuclease domain {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 131

 Score = 27.2 bits (60), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 8/41 (19%)

Query: 225 LYVDKRKVSSEVISFLKESGVEVR-------DYDAVSSDVV 258
           + VD R++ SEV+  LK  GV++        DY  +S DV 
Sbjct: 3   VVVDSRELRSEVVKRLKLLGVKLEVKTLDVGDY-IISEDVA 42


>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD
           {Salmonella enterica [TaxId: 28901]}
          Length = 355

 Score = 27.4 bits (59), Expect = 3.7
 Identities = 6/58 (10%), Positives = 15/58 (25%)

Query: 195 VAWLYNIRGTDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVRDYDA 252
             WL             +    +    A +L +   +   ++   L    + +R    
Sbjct: 268 WHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILIRSCAN 325


>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4
           [TaxId: 10665]}
          Length = 193

 Score = 26.8 bits (58), Expect = 4.3
 Identities = 9/45 (20%), Positives = 12/45 (26%)

Query: 204 TDVPYCPVVHAFAIVTTNAAFLYVDKRKVSSEVISFLKESGVEVR 248
           T  P      A A              K        L+ +G+EV 
Sbjct: 128 TLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRNAGIEVF 172


>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella
           pertussis [TaxId: 520]}
          Length = 318

 Score = 26.7 bits (57), Expect = 5.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 239 FLKESGVEVRDYDAVSSDVVLLQSNQLNPPADV 271
           F K+SG++V         +  +++     PADV
Sbjct: 21  FAKDSGIKVNTVFVKDGLLERVRAEGDKSPADV 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0385    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,474,094
Number of extensions: 67538
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 7
Length of query: 400
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,213,086
Effective search space: 379695918
Effective search space used: 379695918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)