BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015780
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 98 FQNSTGRPVAYTTPIGSGSPTL-------QPGSLSFQVPNISAT 134
FQ S RP+ + P G+G TL P S F VP+ + T
Sbjct: 12 FQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRT 55
>pdb|1UOC|A Chain A, X-Ray Structure Of The Rnase Domain Of The Yeast Pop2
Protein
pdb|1UOC|B Chain B, X-Ray Structure Of The Rnase Domain Of The Yeast Pop2
Protein
Length = 289
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 272 GIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYH--WSLGYSVIVL 324
GI + KH N+GI +F L M + L+ + W YH + LG+ + +L
Sbjct: 125 GINFEKHENLGIDVFEFSQLLMDSGLMMDD-----SVTWITYHAAYDLGFLINIL 174
>pdb|4B8A|B Chain B, Structure Of Yeast Not1 Mif4g Domain Co-Crystallized With
Caf1
Length = 286
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 272 GIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYH--WSLGYSVIVL 324
GI + KH N+GI +F L M + L+ + W YH + LG+ + +L
Sbjct: 122 GINFEKHENLGIDVFEFSQLLMDSGLMMDD-----SVTWITYHAAYDLGFLINIL 171
>pdb|4B8C|A Chain A, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|C Chain C, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|E Chain E, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|F Chain F, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 288
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 272 GIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYH--WSLGYSVIVL 324
GI + KH N+GI +F L M + L+ + W YH + LG+ + +L
Sbjct: 124 GINFEKHENLGIDVFEFSQLLMDSGLMMDD-----SVTWITYHAAYDLGFLINIL 173
>pdb|2BVT|A Chain A, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVT|B Chain B, The Structure Of A Modular Endo-Beta-1,4-Mannanase From
Cellulomonas Fimi Explains The Product Specificity Of
Glycoside Hydrolase Family 26 Mannanases.
pdb|2BVY|A Chain A, The Structure And Characterization Of A Modular
Endo-Beta-1, 4-Mannanase From Cellulomonas Fimi
Length = 475
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 251 SGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFA 287
+G V GW T I GN+ PG+ N R+ IALFA
Sbjct: 60 TGDFPAVFGWDTLIIEGNERPGLAENT-RDENIALFA 95
>pdb|2X2Y|A Chain A, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
pdb|2X2Y|B Chain B, Cellulomonas Fimi Endo-Beta-1,4-Mannanase Double Mutant
Length = 475
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 251 SGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFA 287
+G V GW T I GN+ PG+ N R+ IALFA
Sbjct: 60 TGDFPAVFGWDTLIIEGNERPGLAENT-RDENIALFA 95
>pdb|3TP4|A Chain A, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
pdb|3TP4|B Chain B, Crystal Structure Of Engineered Protein At The Resolution
1.98a, Northeast Structural Genomics Consortium Target
Or128
Length = 475
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 251 SGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFA 287
+G V GW T I GN PG+ N R+ IALFA
Sbjct: 60 TGDFPAVFGWSTSIIEGNQRPGLAENT-RDENIALFA 95
>pdb|3G8R|A Chain A, Crystal Structure Of Putative Spore Coat Polysaccharide
Biosynthesis Protein E From Chromobacterium Violaceum
Atcc 12472
pdb|3G8R|B Chain B, Crystal Structure Of Putative Spore Coat Polysaccharide
Biosynthesis Protein E From Chromobacterium Violaceum
Atcc 12472
Length = 350
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 85 SGQRMAGSQCLVAFQNSTGRPVAYTTPIGSGSPTLQPGSLSFQVPNISATLEGNQWTIF 143
G+ A S+ A S R V T P+ +G L ++SF P + L N+W+ +
Sbjct: 261 DGEDDAVSETEQASLRSLRRGVFATRPVAAGE-ALTADNVSFAFPPVEGQLTANEWSKY 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,336,767
Number of Sequences: 62578
Number of extensions: 447935
Number of successful extensions: 846
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 9
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)