Query 015780
Match_columns 400
No_of_seqs 226 out of 1078
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4293 Predicted membrane pro 100.0 1.8E-40 3.9E-45 334.1 4.2 352 20-373 15-380 (403)
2 cd08760 Cyt_b561_FRRS1_like Eu 100.0 3.9E-31 8.4E-36 241.6 16.7 178 181-361 3-190 (191)
3 smart00665 B561 Cytochrome b-5 99.9 7.8E-25 1.7E-29 187.7 10.5 123 208-333 1-129 (129)
4 PF03188 Cytochrom_B561: Eukar 99.9 3.8E-22 8.2E-27 172.5 12.0 126 208-334 1-131 (137)
5 cd08554 Cyt_b561 Eukaryotic cy 99.9 1E-21 2.3E-26 168.7 10.2 125 206-333 2-131 (131)
6 smart00664 DoH Possible catech 99.8 7.1E-20 1.5E-24 160.3 18.6 135 48-190 2-146 (148)
7 cd08761 Cyt_b561_CYB561D2_like 99.8 5.8E-20 1.2E-24 166.8 11.4 132 203-335 18-157 (183)
8 cd08766 Cyt_b561_ACYB-1_like P 99.8 5E-20 1.1E-24 159.5 9.9 131 201-335 3-138 (144)
9 PLN02810 carbon-monoxide oxyge 99.8 5.8E-19 1.3E-23 161.7 13.0 172 203-383 44-231 (231)
10 PLN02351 cytochromes b561 fami 99.8 8.1E-19 1.8E-23 162.1 13.5 155 204-362 48-219 (242)
11 cd08762 Cyt_b561_CYBASC3 Verte 99.8 8.4E-19 1.8E-23 155.6 10.1 132 204-335 33-168 (179)
12 cd08765 Cyt_b561_CYBRD1 Verteb 99.8 7.1E-19 1.5E-23 153.2 9.5 132 203-335 9-145 (153)
13 cd08764 Cyt_b561_CG1275_like N 99.8 1.7E-18 3.8E-23 158.9 11.6 130 203-335 21-157 (214)
14 PF03351 DOMON: DOMON domain; 99.8 3.1E-17 6.6E-22 139.0 16.2 111 47-162 2-124 (124)
15 PLN02680 carbon-monoxide oxyge 99.7 1.3E-17 2.9E-22 153.9 12.3 131 201-335 42-177 (232)
16 cd08763 Cyt_b561_CYB561 Verteb 99.7 1.2E-17 2.5E-22 144.7 10.0 129 204-335 5-138 (143)
17 KOG1619 Cytochrome b [Energy p 99.7 2.1E-16 4.5E-21 144.5 7.7 131 203-335 52-186 (245)
18 PF04526 DUF568: Protein of un 99.6 9.7E-15 2.1E-19 118.5 11.1 99 89-187 1-101 (101)
19 cd00241 CDH_cytochrome Cellobi 99.4 1.6E-11 3.5E-16 110.5 14.3 133 48-190 22-174 (184)
20 PF10348 DUF2427: Domain of un 99.3 8.5E-12 1.8E-16 102.6 7.7 88 201-298 13-101 (105)
21 KOG3568 Dopamine beta-monooxyg 99.2 2E-10 4.3E-15 113.8 11.9 131 37-174 31-172 (603)
22 cd08760 Cyt_b561_FRRS1_like Eu 96.2 0.039 8.5E-07 50.2 9.9 97 238-338 32-129 (191)
23 cd08763 Cyt_b561_CYB561 Verteb 96.1 0.048 1E-06 47.4 9.5 94 241-336 6-100 (143)
24 smart00665 B561 Cytochrome b-5 96.1 0.041 9E-07 46.8 9.0 94 244-339 1-96 (129)
25 cd08554 Cyt_b561 Eukaryotic cy 96.0 0.041 8.9E-07 46.9 8.7 93 242-336 2-95 (131)
26 PF13301 DUF4079: Protein of u 95.9 0.088 1.9E-06 47.4 10.3 88 243-336 81-172 (175)
27 cd08764 Cyt_b561_CG1275_like N 95.8 0.082 1.8E-06 49.1 10.0 97 239-335 21-118 (214)
28 cd08766 Cyt_b561_ACYB-1_like P 95.8 0.062 1.3E-06 46.8 8.7 93 240-334 6-98 (144)
29 cd08761 Cyt_b561_CYB561D2_like 95.6 0.084 1.8E-06 47.8 9.1 95 239-335 18-116 (183)
30 cd08762 Cyt_b561_CYBASC3 Verte 95.5 0.3 6.5E-06 44.0 12.0 97 238-336 31-130 (179)
31 PF03188 Cytochrom_B561: Eukar 95.3 0.11 2.4E-06 44.4 8.7 91 244-336 1-94 (137)
32 PLN02680 carbon-monoxide oxyge 95.3 0.14 3E-06 48.0 9.6 93 241-335 46-138 (232)
33 PLN02810 carbon-monoxide oxyge 93.9 0.39 8.5E-06 44.8 9.0 92 241-334 46-137 (231)
34 PLN02351 cytochromes b561 fami 93.8 0.63 1.4E-05 43.8 10.4 94 240-336 49-142 (242)
35 KOG1619 Cytochrome b [Energy p 93.0 0.49 1.1E-05 44.3 8.1 121 214-336 25-148 (245)
36 cd08765 Cyt_b561_CYBRD1 Verteb 92.7 0.79 1.7E-05 40.3 8.6 94 241-336 11-107 (153)
37 PF00033 Cytochrom_B_N: Cytoch 92.2 0.25 5.3E-06 44.1 5.1 93 243-335 10-127 (188)
38 COG2717 Predicted membrane pro 90.6 4.2 9.1E-05 37.6 11.3 132 211-353 48-185 (209)
39 PF10067 DUF2306: Predicted me 90.5 0.85 1.8E-05 37.3 6.2 31 307-337 2-32 (103)
40 PF10348 DUF2427: Domain of un 89.7 1.9 4.1E-05 35.5 7.6 88 237-334 13-101 (105)
41 COG5658 Predicted integral mem 87.6 2.6 5.7E-05 38.7 7.7 68 305-372 40-107 (204)
42 PF00033 Cytochrom_B_N: Cytoch 86.4 3.5 7.5E-05 36.5 7.9 129 205-334 8-173 (188)
43 PF13172 PepSY_TM_1: PepSY-ass 86.2 0.85 1.8E-05 29.4 2.7 30 307-336 2-31 (34)
44 PF05568 ASFV_J13L: African sw 86.1 1.4 2.9E-05 38.1 4.7 56 345-400 31-88 (189)
45 PF13301 DUF4079: Protein of u 85.9 7.9 0.00017 34.8 9.8 70 275-346 80-150 (175)
46 PF10951 DUF2776: Protein of u 83.0 5 0.00011 38.7 7.5 83 247-336 156-244 (347)
47 PF10361 DUF2434: Protein of u 82.4 8.9 0.00019 37.0 8.9 112 276-389 44-168 (296)
48 PF01292 Ni_hydr_CYTB: Prokary 80.5 20 0.00042 31.6 10.3 92 243-336 8-123 (182)
49 TIGR01583 formate-DH-gamm form 79.0 33 0.00073 31.3 11.5 28 309-336 103-130 (204)
50 PF13706 PepSY_TM_3: PepSY-ass 78.1 2.9 6.2E-05 27.5 3.0 29 307-335 1-29 (37)
51 PF12273 RCR: Chitin synthesis 78.0 2.7 5.8E-05 35.8 3.6 11 363-373 19-29 (130)
52 PF08507 COPI_assoc: COPI asso 77.6 16 0.00034 31.3 8.3 28 306-333 57-84 (136)
53 PF13630 SdpI: SdpI/YhfL prote 77.2 2.4 5.2E-05 32.1 2.8 33 305-337 18-50 (76)
54 PRK11513 cytochrome b561; Prov 76.4 6.6 0.00014 35.3 5.9 24 275-298 42-65 (176)
55 PF01292 Ni_hydr_CYTB: Prokary 74.8 27 0.00059 30.7 9.5 124 206-331 7-164 (182)
56 TIGR02125 CytB-hydogenase Ni/F 73.6 35 0.00075 31.0 10.1 28 310-337 112-139 (211)
57 PRK10179 formate dehydrogenase 72.3 31 0.00067 32.0 9.5 29 308-336 107-135 (217)
58 PF01794 Ferric_reduct: Ferric 71.5 13 0.00029 30.3 6.3 48 281-330 1-53 (125)
59 PRK05771 V-type ATP synthase s 69.5 37 0.0008 36.9 10.7 48 286-333 450-498 (646)
60 PRK12405 electron transport co 69.2 70 0.0015 30.1 11.0 69 208-287 36-104 (231)
61 COG3038 CybB Cytochrome B561 [ 69.0 43 0.00094 30.3 9.2 56 243-298 14-70 (181)
62 PF13703 PepSY_TM_2: PepSY-ass 68.7 11 0.00023 29.7 4.7 36 299-335 50-85 (88)
63 PF10856 DUF2678: Protein of u 61.4 33 0.00071 28.6 6.3 53 276-334 29-81 (118)
64 PRK10639 formate dehydrogenase 60.8 95 0.002 28.5 10.2 28 309-336 106-133 (211)
65 PF15330 SIT: SHP2-interacting 60.3 15 0.00032 30.4 4.2 28 348-375 5-32 (107)
66 PF15099 PIRT: Phosphoinositid 59.3 8.4 0.00018 32.5 2.6 66 308-374 44-111 (129)
67 TIGR00910 2A0307_GadC glutamat 58.4 56 0.0012 34.3 9.3 32 298-329 385-416 (507)
68 KOG1608 Protein transporter of 57.4 1.1E+02 0.0023 30.0 9.9 59 280-338 217-281 (374)
69 PF13789 DUF4181: Domain of un 55.7 43 0.00094 27.5 6.3 31 308-338 25-55 (110)
70 PF01102 Glycophorin_A: Glycop 54.9 19 0.00041 30.4 4.0 17 344-360 66-82 (122)
71 PRK05419 putative sulfite oxid 50.9 2E+02 0.0044 26.4 10.9 91 240-333 72-168 (205)
72 TIGR02230 ATPase_gene1 F0F1-AT 49.4 50 0.0011 26.9 5.5 53 203-265 36-90 (100)
73 PF03929 PepSY_TM: PepSY-assoc 47.0 28 0.00061 21.3 2.8 24 311-334 2-25 (27)
74 cd01663 Cyt_c_Oxidase_I Cytoch 46.1 2.6E+02 0.0057 29.3 11.8 60 203-262 46-109 (488)
75 PRK10263 DNA translocase FtsK; 43.8 2.2E+02 0.0047 33.7 11.3 37 206-242 16-52 (1355)
76 PF04238 DUF420: Protein of un 43.8 2.1E+02 0.0045 24.5 9.8 24 312-335 79-102 (133)
77 PRK03735 cytochrome b6; Provis 43.5 1.2E+02 0.0027 28.3 8.0 107 205-337 40-148 (223)
78 TIGR03750 conj_TIGR03750 conju 43.2 85 0.0019 26.1 6.1 18 318-335 24-41 (111)
79 PF12811 BaxI_1: Bax inhibitor 42.7 1.2E+02 0.0026 29.4 7.9 57 312-369 209-271 (274)
80 PRK15097 cytochrome d terminal 42.6 4.4E+02 0.0096 28.0 12.6 156 207-371 17-211 (522)
81 PF02060 ISK_Channel: Slow vol 42.4 55 0.0012 27.7 4.9 39 341-381 41-79 (129)
82 TIGR00383 corA magnesium Mg(2+ 41.5 78 0.0017 30.7 6.8 43 316-358 263-306 (318)
83 COG4244 Predicted membrane pro 41.0 1.7E+02 0.0037 25.9 7.9 51 207-265 21-71 (160)
84 PTZ00127 cytochrome c oxidase 40.4 2.1E+02 0.0045 29.3 9.8 61 276-337 219-279 (403)
85 PF10129 OpgC_C: OpgC protein; 40.3 3.6E+02 0.0077 27.1 11.3 54 207-264 186-239 (358)
86 COG2717 Predicted membrane pro 39.8 50 0.0011 30.6 4.6 44 203-248 110-153 (209)
87 KOG4671 Brain cell membrane pr 39.7 64 0.0014 29.2 5.1 60 241-302 79-138 (201)
88 COG4329 Predicted membrane pro 39.4 50 0.0011 28.2 4.2 16 207-222 13-28 (160)
89 PRK15035 cytochrome bd-II oxid 39.1 4.3E+02 0.0092 28.1 11.8 156 207-371 17-211 (514)
90 PF12650 DUF3784: Domain of un 38.3 1.1E+02 0.0025 24.2 6.1 28 309-336 38-65 (97)
91 PF11990 DUF3487: Protein of u 38.2 98 0.0021 26.1 5.8 19 317-335 26-44 (121)
92 COG0598 CorA Mg2+ and Co2+ tra 38.2 63 0.0014 31.8 5.5 44 316-359 267-311 (322)
93 PRK09546 zntB zinc transporter 37.7 87 0.0019 30.7 6.4 41 316-356 269-310 (324)
94 KOG4293 Predicted membrane pro 37.6 16 0.00035 37.3 1.2 113 202-316 277-395 (403)
95 CHL00070 petB cytochrome b6 37.5 1.8E+02 0.004 27.0 8.1 108 204-337 31-140 (215)
96 PHA02898 virion envelope prote 37.4 2.1E+02 0.0046 22.7 8.0 54 315-370 15-70 (92)
97 COG2149 Predicted membrane pro 37.2 1.8E+02 0.0039 24.4 7.0 23 307-329 24-46 (120)
98 PF05393 Hum_adeno_E3A: Human 36.7 67 0.0015 25.5 4.2 26 360-385 46-71 (94)
99 PF01654 Bac_Ubq_Cox: Bacteria 36.6 3.5E+02 0.0076 28.0 10.8 26 346-371 180-205 (436)
100 PRK10369 heme lyase subunit Nr 34.9 5.8E+02 0.013 27.5 12.2 61 203-265 168-229 (571)
101 COG4858 Uncharacterized membra 34.2 3.7E+02 0.008 24.6 10.3 84 237-333 91-184 (226)
102 PF02628 COX15-CtaA: Cytochrom 34.2 4.4E+02 0.0095 25.4 13.0 61 275-337 131-191 (302)
103 PF02656 DUF202: Domain of unk 33.9 2E+02 0.0043 21.4 6.9 27 306-332 7-33 (73)
104 CHL00070 petB cytochrome b6 33.7 1.1E+02 0.0024 28.5 6.0 74 280-353 35-129 (215)
105 PF09323 DUF1980: Domain of un 33.5 1.9E+02 0.0042 25.8 7.5 12 219-230 6-17 (182)
106 COG3247 HdeD Uncharacterized c 33.1 3.8E+02 0.0082 24.4 10.1 46 280-339 106-152 (185)
107 PRK03735 cytochrome b6; Provis 32.8 1.2E+02 0.0025 28.5 6.0 74 280-353 43-137 (223)
108 TIGR03145 cyt_nit_nrfE cytochr 32.7 4.9E+02 0.011 28.4 11.4 61 203-265 166-227 (628)
109 PF14800 DUF4481: Domain of un 32.6 1.6E+02 0.0035 28.8 6.9 35 311-345 63-97 (308)
110 TIGR02125 CytB-hydogenase Ni/F 32.2 2.7E+02 0.0059 25.0 8.4 51 206-257 8-64 (211)
111 PF15345 TMEM51: Transmembrane 32.1 64 0.0014 30.3 4.1 19 315-333 10-28 (233)
112 PRK10171 hydrogenase 1 b-type 32.0 4.2E+02 0.0092 24.7 9.9 61 204-265 17-83 (235)
113 PF06341 DUF1056: Protein of u 31.8 1.8E+02 0.0038 21.7 5.5 30 308-337 5-34 (63)
114 COG4097 Predicted ferric reduc 31.4 5.8E+02 0.013 26.1 12.2 20 275-294 76-95 (438)
115 PF14358 DUF4405: Domain of un 30.5 1.6E+02 0.0034 21.4 5.3 40 211-250 7-50 (64)
116 cd00284 Cytochrome_b_N Cytochr 30.2 1.8E+02 0.004 26.6 6.8 110 205-339 21-131 (200)
117 PF11014 DUF2852: Protein of u 30.1 61 0.0013 27.1 3.2 21 210-230 12-32 (115)
118 PF02628 COX15-CtaA: Cytochrom 30.0 3.6E+02 0.0078 26.0 9.3 89 241-335 67-155 (302)
119 PRK05419 putative sulfite oxid 29.9 91 0.002 28.7 4.8 34 212-247 119-152 (205)
120 PLN02631 ferric-chelate reduct 29.9 1.1E+02 0.0024 33.7 6.1 61 275-336 189-254 (699)
121 TIGR03813 put_Glu_GABA_T putat 29.8 1.7E+02 0.0037 30.2 7.3 35 298-332 382-416 (474)
122 PF13994 PgaD: PgaD-like prote 29.7 1.8E+02 0.0039 24.8 6.3 11 345-355 66-76 (138)
123 PF01578 Cytochrom_C_asm: Cyto 28.6 4.4E+02 0.0096 23.8 9.3 26 240-265 70-95 (214)
124 PF10856 DUF2678: Protein of u 28.5 2.1E+02 0.0046 23.9 6.1 49 243-294 29-77 (118)
125 PF15176 LRR19-TM: Leucine-ric 28.3 2.6E+02 0.0056 22.8 6.4 31 339-369 14-44 (102)
126 PF15284 PAGK: Phage-encoded v 28.0 61 0.0013 23.8 2.5 18 4-21 5-22 (61)
127 COG2271 UhpC Sugar phosphate p 27.9 1.7E+02 0.0038 30.2 6.7 26 302-327 150-175 (448)
128 PRK11513 cytochrome b561; Prov 26.9 3.3E+02 0.0072 24.2 7.8 59 240-298 40-103 (176)
129 TIGR02908 CoxD_Bacillus cytoch 26.8 3.7E+02 0.008 22.3 7.6 45 242-294 25-69 (110)
130 PF06011 TRP: Transient recept 26.4 5.5E+02 0.012 26.3 10.4 30 298-331 344-373 (438)
131 PF06609 TRI12: Fungal trichot 26.3 8.1E+02 0.018 26.5 11.8 33 315-347 240-273 (599)
132 PF10320 7TM_GPCR_Srsx: Serpen 26.2 4.2E+02 0.009 24.9 8.8 26 313-338 104-129 (257)
133 COG3038 CybB Cytochrome B561 [ 26.0 4.5E+02 0.0097 23.8 8.3 93 205-299 12-109 (181)
134 PF12794 MscS_TM: Mechanosensi 25.8 4E+02 0.0087 26.4 8.9 87 244-334 125-220 (340)
135 COG3698 Predicted periplasmic 25.2 94 0.002 29.0 3.8 82 6-94 7-93 (250)
136 PF05297 Herpes_LMP1: Herpesvi 24.3 25 0.00055 34.0 0.0 17 204-220 17-33 (381)
137 COG1030 NfeD Membrane-bound se 24.3 8.1E+02 0.018 25.4 11.3 14 323-336 309-322 (436)
138 PLN02292 ferric-chelate reduct 24.0 1.5E+02 0.0032 32.7 5.8 63 310-372 205-274 (702)
139 PF05545 FixQ: Cbb3-type cytoc 23.9 1.1E+02 0.0025 21.0 3.3 17 358-374 21-37 (49)
140 PF14358 DUF4405: Domain of un 23.8 1.8E+02 0.0038 21.1 4.5 24 306-329 37-60 (64)
141 COG2149 Predicted membrane pro 23.8 2.2E+02 0.0048 23.9 5.4 13 280-292 58-70 (120)
142 MTH00086 CYTB cytochrome b; Pr 23.7 2E+02 0.0044 28.9 6.3 77 256-340 34-127 (355)
143 PF11158 DUF2938: Protein of u 23.3 95 0.0021 27.2 3.4 51 277-327 93-149 (150)
144 PF14256 YwiC: YwiC-like prote 23.1 1.4E+02 0.003 25.4 4.3 26 277-302 26-52 (129)
145 cd00284 Cytochrome_b_N Cytochr 23.0 1.5E+02 0.0032 27.3 4.7 56 280-335 24-96 (200)
146 TIGR02891 CtaD_CoxA cytochrome 23.0 9E+02 0.019 25.4 11.9 130 203-332 50-198 (506)
147 PF02439 Adeno_E3_CR2: Adenovi 22.9 2E+02 0.0042 19.2 3.9 11 363-373 23-33 (38)
148 cd01661 cbb3_Oxidase_I Cytochr 22.8 8.4E+02 0.018 25.6 10.9 61 203-264 87-150 (493)
149 TIGR00930 2a30 K-Cl cotranspor 22.7 3.1E+02 0.0068 31.4 8.2 26 305-330 490-515 (953)
150 PF11862 DUF3382: Domain of un 22.7 2.6E+02 0.0057 22.5 5.7 75 253-327 14-100 (101)
151 COG3125 CyoD Heme/copper-type 22.6 4.5E+02 0.0098 21.8 8.1 77 243-329 18-97 (111)
152 PF10242 L_HGMIC_fpl: Lipoma H 22.4 1.5E+02 0.0033 26.6 4.7 58 205-262 69-126 (181)
153 PF05393 Hum_adeno_E3A: Human 22.4 1.4E+02 0.0031 23.6 3.8 25 350-374 40-64 (94)
154 TIGR02901 QoxD cytochrome aa3 22.1 4.2E+02 0.0091 21.3 7.6 71 244-324 8-81 (94)
155 PF07172 GRP: Glycine rich pro 22.0 60 0.0013 26.1 1.8 26 1-27 1-26 (95)
156 TIGR01478 STEVOR variant surfa 22.0 1.2E+02 0.0025 29.5 3.9 13 251-263 182-194 (295)
157 PRK11085 magnesium/nickel/coba 21.9 3.1E+02 0.0067 27.1 7.1 45 313-357 258-303 (316)
158 PF05915 DUF872: Eukaryotic pr 21.8 2.1E+02 0.0046 23.8 5.1 57 315-373 44-106 (115)
159 PF05084 GRA6: Granule antigen 21.5 2.8E+02 0.0061 24.6 5.9 11 312-322 149-159 (215)
160 PLN02844 oxidoreductase/ferric 21.4 2.1E+02 0.0046 31.7 6.3 60 275-335 192-257 (722)
161 PF11241 DUF3043: Protein of u 21.0 3E+02 0.0065 24.7 6.1 21 314-334 74-94 (170)
162 PF04145 Ctr: Ctr copper trans 21.0 58 0.0013 27.5 1.6 26 345-370 26-51 (144)
163 PF11044 TMEMspv1-c74-12: Plec 20.8 1.7E+02 0.0038 20.1 3.4 8 357-364 20-27 (49)
164 PF10953 DUF2754: Protein of u 20.7 1.5E+02 0.0034 21.6 3.4 30 304-334 5-34 (70)
165 PRK09292 Na(+)-translocating N 20.6 6.9E+02 0.015 23.2 9.6 70 207-287 38-107 (209)
166 COG5264 VTC1 Vacuolar transpor 20.5 5.3E+02 0.011 21.8 7.4 26 360-387 79-104 (126)
167 PF06653 Claudin_3: Tight junc 20.3 5.9E+02 0.013 22.3 8.5 14 343-356 132-145 (163)
168 PF01456 Mucin: Mucin-like gly 20.2 77 0.0017 27.0 2.2 16 1-16 1-16 (143)
169 PF01578 Cytochrom_C_asm: Cyto 20.2 5.1E+02 0.011 23.4 7.9 66 203-268 69-148 (214)
170 PF06024 DUF912: Nucleopolyhed 20.0 40 0.00086 27.4 0.3 26 344-370 63-88 (101)
No 1
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-40 Score=334.06 Aligned_cols=352 Identities=43% Similarity=0.796 Sum_probs=293.5
Q ss_pred ccccccc--CcCcccccccccccccccCCCCCeEEEEEEecCCCeEEEEEEEecCCCCceEEEEeCCCCCCCCCCcEEEE
Q 015780 20 ASSYAQQ--TCGRQAFNNNKVYSTCTDLPVLNSFLHWNYDQSTNTVDLAFRHTTTSSSRWVAWALNPSGQRMAGSQCLVA 97 (400)
Q Consensus 20 ~~~~~~~--~C~~~~~~~~~~~~~C~~l~~~~~~l~W~~~~~~~~i~i~~~~~~~~~~gWvA~Gfs~~g~~M~gsd~vI~ 97 (400)
+.++.++ .|.+.+++.+++|+.|.++|+++..++++++.+++.+++.|.... ...|++++|+|++.+|.++.++++
T Consensus 15 ~~~~~~~~~~C~~~~~~~~~~~~~c~~lp~~~~~i~~~~~~~~~~~~i~~~~~~--~~~w~~~~~~p~~t~m~~~~~~va 92 (403)
T KOG4293|consen 15 TSPAFSQTDTCSSQTFNIDKSFDSCVDLPTLNSFIHYTYNSANGVLSIAFSAPL--SSAWVAWAINPTGTGMVGSRALVA 92 (403)
T ss_pred cCchhhhhcceeeeeccCCccccccccCCCCCceEEEEEecCCCeEEEEEecCC--cccccccccCCccccccccceeee
Confidence 4455554 699988888899999999999999999999988899999998743 445999999999977999999999
Q ss_pred EECC-CCCeEEEEeecCCCCCCCCCCCcceeeecceEEEeCCE---EEEEEEEecC-CCCcceeEEEeeCCCC--CCCCC
Q 015780 98 FQNS-TGRPVAYTTPIGSGSPTLQPGSLSFQVPNISATLEGNQ---WTIFATLQLT-NNLLSTNQVWQEGPMN--GDTPG 170 (400)
Q Consensus 98 ~~~~-~G~v~v~~~~~~g~~~p~~d~~~~~~l~~~s~~~~~g~---~~~~f~~~l~-~~~~~~~~IwA~G~~~--~~~l~ 170 (400)
|.++ +|...+..++..++.+........+++.+....+.... +.++.+.+++ .+...++.+|+.|+.. +..+.
T Consensus 93 ~~~~~~g~~~~~t~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~l~~~~~~~~~~~w~~~~~~~~g~~~~ 172 (403)
T KOG4293|consen 93 YAGSSSGATTVKTYVILGYSPSLVPALLSFTLGNVRAECNLRSSSPIGIFASFKLAGANGGKYSAVWQVGPTGSGGGRPK 172 (403)
T ss_pred eeccccchhhceeeeecccchhhcccccceeeecCcchhhccCCCCceEEEEEEeecCCCceeEEEEEccCCccCCCCCc
Confidence 9975 67788888888888643333334455555544443333 6778888888 4668889999999876 68899
Q ss_pred CCCCCCCCCccceeEeccc--CccccCC--CCCCcccchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhH
Q 015780 171 AHAMSGDNARSVGTIDFRT--GQTTAGG--GSSDSRRRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHV 246 (400)
Q Consensus 171 ~H~~~g~n~~s~~~ldl~~--g~~~~~~--~~~~~~~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~ 246 (400)
+|+..+.+..+...+|++. |...... ....++.++...||++|.++|++++|+|++.+||+|..+..++.||++|+
T Consensus 173 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~ 252 (403)
T KOG4293|consen 173 RHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHR 252 (403)
T ss_pred cCccccCCccceeecccccccccccccccCcccCcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhh
Confidence 9999887766666777775 3222111 11233456677799999999999999999999999998778999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHH
Q 015780 247 ACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSI 326 (400)
Q Consensus 247 ~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~ 326 (400)
.+|..++++.+.|+..+....+++.+..+..|..+|+.++++.++|++..++||.|++|.|++|||+|+..||..+++|+
T Consensus 253 ~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~ 332 (403)
T KOG4293|consen 253 ACQFTGFILGVAGFVDGLKLSNESDGTVYSAHTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGI 332 (403)
T ss_pred hheeeEEEEEeeeeeeeEEEccCCCceeeeecccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehh
Confidence 99999999999999999998887777777999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccccCCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015780 327 INIFEGFDILDPEKKWK-RAYIGILIFLGAVAALLEAITWVIVLKRKN 373 (400)
Q Consensus 327 ~ni~~Gl~l~~~~~~~~-~~~~~~~~~~~~~~i~lei~~w~~~~~~~~ 373 (400)
+|++.|+.+.++...|+ ++|+.+.+++.++++++|+.+|+...+|.+
T Consensus 333 ~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 380 (403)
T KOG4293|consen 333 VNIFDGLELLYPGQSWIKLGYGSILAVLGLIAVILEILSWRITIERPS 380 (403)
T ss_pred hHHhhhHhhhcCCCceEEeeeeeEEEEechhhhhhhhheeeeeecccC
Confidence 99999999999988898 799999999999999999999877655544
No 2
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.97 E-value=3.9e-31 Score=241.64 Aligned_cols=178 Identities=39% Similarity=0.696 Sum_probs=151.4
Q ss_pred cceeEecccCccccCCC--------CCCcccchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHH
Q 015780 181 SVGTIDFRTGQTTAGGG--------SSDSRRRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASG 252 (400)
Q Consensus 181 s~~~ldl~~g~~~~~~~--------~~~~~~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~ 252 (400)
+..++|+++|+++.... ...+.+..+++||++|++||++++|+|++++||++. .++.||++|+.+|+++
T Consensus 3 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~---~~~~~~~~H~~~q~~~ 79 (191)
T cd08760 3 SSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL---GDPVWFYLHAGLQLLA 79 (191)
T ss_pred cceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHH
Confidence 34678888877653321 112346789999999999999999999999999743 4688999999999999
Q ss_pred HHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHc
Q 015780 253 YIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEG 332 (400)
Q Consensus 253 ~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~G 332 (400)
++++++|+++++..........++.|+++|+++++++++|++.|++||.+..+.|++|+++|+++|++++++|++|+.+|
T Consensus 80 ~~~~i~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G 159 (191)
T cd08760 80 VLLAIAGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLG 159 (191)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987511122336899999999999999999999999998888899999999999999999999999999
Q ss_pred ccccCCC--CcchhHHHHHHHHHHHHHHHHH
Q 015780 333 FDILDPE--KKWKRAYIGILIFLGAVAALLE 361 (400)
Q Consensus 333 l~l~~~~--~~~~~~~~~~~~~~~~~~i~le 361 (400)
+.+.+.+ +.+.++|.++++++.++.+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 190 (191)
T cd08760 160 LDLAGAGTPKAWKIAYGVVVAVLALVYLILE 190 (191)
T ss_pred HHHhcCCcccchhhHHHHHHHHHHHHHHHHc
Confidence 9999876 7888899999998888888776
No 3
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=99.92 E-value=7.8e-25 Score=187.67 Aligned_cols=123 Identities=35% Similarity=0.618 Sum_probs=110.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHh-hhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCC--CCCCcccccchhHH
Q 015780 208 THGVLNAVSWGVLIPMGAMIARY-LKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDS--PGIKYNKHRNIGIA 284 (400)
Q Consensus 208 ~Hg~lm~~aw~il~P~gil~aR~-~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~H~~lG~~ 284 (400)
+||++|.+||++++|.|++++|+ .+. ..++.||++|+.+|+++++++++|+++++...++. +++ +++|+++|++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~--~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~-~s~H~~lGl~ 77 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRF--LSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANF-YSLHSWLGLA 77 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCc-cchhHHHHHH
Confidence 69999999999999999999997 333 25688999999999999999999999999876653 234 6999999999
Q ss_pred HHHHHHHHHhheeeccCCC---CCCcccchhhhHHHHHHHHHHHHHHHHHcc
Q 015780 285 LFAIGTLQMFAMLLRPKPD---HKYRLYWNIYHWSLGYSVIVLSIINIFEGF 333 (400)
Q Consensus 285 ~~~l~~~Q~l~~~~rp~~~---~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl 333 (400)
++++..+|++.|++||.++ .+.|+.++++|+++|++++++|++|+.+|+
T Consensus 78 ~~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~ 129 (129)
T smart00665 78 AFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129 (129)
T ss_pred HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999887775 677899999999999999999999999996
No 4
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=99.88 E-value=3.8e-22 Score=172.54 Aligned_cols=126 Identities=29% Similarity=0.491 Sum_probs=108.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCC--CCCCcccccchhHHH
Q 015780 208 THGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDS--PGIKYNKHRNIGIAL 285 (400)
Q Consensus 208 ~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~H~~lG~~~ 285 (400)
+|+++|.+||++++|.|++++|+.+..+.+++.|+++|+.+|++++++.++|+++++...++. +++ +++|+++|+++
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~-~s~H~~lG~~~ 79 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHF-KSWHSILGLAT 79 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC-CCchhhhhHHH
Confidence 699999999999999999999974421335788999999999999999999999998876543 344 68999999999
Q ss_pred HHHHHHHHhheeec---cCCCCCCcccchhhhHHHHHHHHHHHHHHHHHccc
Q 015780 286 FAIGTLQMFAMLLR---PKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFD 334 (400)
Q Consensus 286 ~~l~~~Q~l~~~~r---p~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~ 334 (400)
++++++|++.|+++ |.++.+.|+.++++|+++|++++++|++|+.+|+.
T Consensus 80 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~ 131 (137)
T PF03188_consen 80 FVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLT 131 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988753 44555678889999999999999999999999984
No 5
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=99.86 E-value=1e-21 Score=168.67 Aligned_cols=125 Identities=22% Similarity=0.348 Sum_probs=109.1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCC--CCCCcccccchhH
Q 015780 206 RNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDS--PGIKYNKHRNIGI 283 (400)
Q Consensus 206 ~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~H~~lG~ 283 (400)
+++|+++|.++|++++|.|++.+|++|.. .++.|+++|+.+|+++.++.++|+++++...++. .++ ++.|+++|+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~-~s~Hs~lGl 78 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANL-YSLHSWLGL 78 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc-hhHHHHHHH
Confidence 57999999999999999999999998765 4678999999999999999999999999876432 244 589999999
Q ss_pred HHHHHHHHHHhheee---ccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcc
Q 015780 284 ALFAIGTLQMFAMLL---RPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGF 333 (400)
Q Consensus 284 ~~~~l~~~Q~l~~~~---rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl 333 (400)
+++++.++|++.|+. .|.+..+.|..++++|+++|+++++++++|+++|+
T Consensus 79 ~~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~ 131 (131)
T cd08554 79 ATVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999988774 35544445889999999999999999999999984
No 6
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.85 E-value=7.1e-20 Score=160.31 Aligned_cols=135 Identities=26% Similarity=0.448 Sum_probs=109.2
Q ss_pred CCeEEEEEEecCCCeEEEEEEEecCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCCeEEEEeecCCCCCCCCCCCccee
Q 015780 48 LNSFLHWNYDQSTNTVDLAFRHTTTSSSRWVAWALNPSGQRMAGSQCLVAFQNSTGRPVAYTTPIGSGSPTLQPGSLSFQ 127 (400)
Q Consensus 48 ~~~~l~W~~~~~~~~i~i~~~~~~~~~~gWvA~Gfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~~d~~~~~~ 127 (400)
.++.++|+++.+ ++++|+++.+.. +.||+|||||++++ |.|+|+++|+.+++|.+.+.|+|++++..|.+|...+
T Consensus 2 ~~~~l~W~~~~~-~~v~~~l~~~~~-~~gwvaiGfs~~~~-M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~-- 76 (148)
T smart00664 2 CDYFLSWSVDGE-NSIAFELSGPTS-TNGWVAIGFSPDGQ-MAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQD-- 76 (148)
T ss_pred ceEEEEEEECCC-CeEEEEEEEecC-CCCEEEEEECCCCC-cCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCcccc--
Confidence 357899999855 787788877542 38999999999865 9999999999987789999999999999888776544
Q ss_pred eecc-eEEEeCCEEEEEEEEecCCCCc--------ceeEEEeeCCC-CCCCCCCCCCCCCCCccceeEecccC
Q 015780 128 VPNI-SATLEGNQWTIFATLQLTNNLL--------STNQVWQEGPM-NGDTPGAHAMSGDNARSVGTIDFRTG 190 (400)
Q Consensus 128 l~~~-s~~~~~g~~~~~f~~~l~~~~~--------~~~~IwA~G~~-~~~~l~~H~~~g~n~~s~~~ldl~~g 190 (400)
+... ++.++||.++|+|+|++.+++. +.+++||.|+. .++.+.+|+.. ..+..++++.+.
T Consensus 77 ~~~~~~~~~~~g~~~~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~~~~~~~~H~~~---~~~~~~i~~~~~ 146 (148)
T smart00664 77 VTDLLSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLSPNGGLGYHDFS---LKSTKKVCLSSC 146 (148)
T ss_pred cccceeEEEECCEEEEEEEEEccCCCccccccCCCeEEEEEEECCCCCCCCeeecccc---ccCceEEEeccC
Confidence 3333 6778999999999999998753 67899999983 36789999864 236678888754
No 7
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=5.8e-20 Score=166.79 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=109.7
Q ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHhhhhcc-cCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCC--CCCCccccc
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFK-TANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDS--PGIKYNKHR 279 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~-~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~~~~~~H~ 279 (400)
+.++++|+++|.++|++++|.|++..|-.+... .+++.|+++|+.+|.+++++.++|+++.+...++. +++ ++.|+
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf-~s~H~ 96 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHF-TSWHG 96 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCc-cchhH
Confidence 468999999999999999999999755322211 24677899999999999999999999888765432 245 58999
Q ss_pred chhHHHHHHHHHHHhheee---ccCCC--CCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 280 NIGIALFAIGTLQMFAMLL---RPKPD--HKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 280 ~lG~~~~~l~~~Q~l~~~~---rp~~~--~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
++|+++++++++|++.|+. +|.+. .++|+.++++|+++|++++++|++|+.+|++.
T Consensus 97 ~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~ 157 (183)
T cd08761 97 ILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET 157 (183)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999988773 34333 25678899999999999999999999999987
No 8
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.82 E-value=5e-20 Score=159.53 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=112.4
Q ss_pred cccchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC--CCCcccc
Q 015780 201 SRRRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP--GIKYNKH 278 (400)
Q Consensus 201 ~~~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~--~~~~~~H 278 (400)
++..++++|++||.++|.++++.|+++.|..|. .++.|..+|+.+|.+++++.++|++..+...++.+ ++ +++|
T Consensus 3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~---~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~-~SlH 78 (144)
T cd08766 3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPG---SREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNL-YSLH 78 (144)
T ss_pred CCcceeeccHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccc-ccHH
Confidence 445789999999999999999999999887653 45677899999999999999999999888765542 33 6999
Q ss_pred cchhHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 279 RNIGIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 279 ~~lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
+|+|++++++..+|.+.|+ +.|....+.|+...++|+++|+++++++++++.+|+..
T Consensus 79 SwlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~e 138 (144)
T cd08766 79 SWLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLE 138 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988665 47775545677788899999999999999999999864
No 9
>PLN02810 carbon-monoxide oxygenase
Probab=99.80 E-value=5.8e-19 Score=161.73 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=130.5
Q ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC--CCCcccccc
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP--GIKYNKHRN 280 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~--~~~~~~H~~ 280 (400)
+..+++|+++|.+++.++...||++.|.++. .++.+..+|+.+|.++++++++|+...+...++.+ ++ ++.|+|
T Consensus 44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nl-ySLHSW 119 (231)
T PLN02810 44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANL-YSLHSW 119 (231)
T ss_pred CceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCce-eeHHHH
Confidence 4589999999999999999999999887654 24556899999999999999999999998776543 33 799999
Q ss_pred hhHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHccccc----CC-------CCcchhHH
Q 015780 281 IGIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDIL----DP-------EKKWKRAY 346 (400)
Q Consensus 281 lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~----~~-------~~~~~~~~ 346 (400)
+|++++++..+|.+.|+ +.|......|....++|..+|..+++++++++.+|+..- +. +....+-+
T Consensus 120 lGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~ 199 (231)
T PLN02810 120 LGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNF 199 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHH
Confidence 99999999999987665 577766666777889999999999999999999998752 11 12233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q 015780 347 IGILIFLGAVAALLEAITWVIVLKRKNGNSVKHHHSI 383 (400)
Q Consensus 347 ~~~~~~~~~~~i~lei~~w~~~~~~~~~~~~~~~~~~ 383 (400)
++++.+++++.+++-+.. +...++..+.|++|
T Consensus 200 ~Glliv~fg~~V~~~~~~-----~~~~~~~~~~~~~~ 231 (231)
T PLN02810 200 TAIITILYGAFVVLTALA-----QSPSDEDDYSYSAI 231 (231)
T ss_pred HHHHHHHHHHHHHHhhcc-----CCCCCCCccccccC
Confidence 555555555544443322 22233445556654
No 10
>PLN02351 cytochromes b561 family protein
Probab=99.79 E-value=8.1e-19 Score=162.06 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=118.3
Q ss_pred chh-hcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccC-CCCCCcccccch
Q 015780 204 RRR-NTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGND-SPGIKYNKHRNI 281 (400)
Q Consensus 204 ~~~-~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~-~~~~~~~~H~~l 281 (400)
..+ ++|+++|.++|++|.+.||++.|.+|. .++.|+.+|+.+|.++++++++|+...+...+. .+++ ++.|+|+
T Consensus 48 ~iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~~i~nl-ySLHSWl 123 (242)
T PLN02351 48 LVYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWTKFHGQDGIVANF-YSLHSWM 123 (242)
T ss_pred ceeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccch-hHHHHHH
Confidence 355 799999999999999999999998764 345689999999999999999999884332221 1233 7999999
Q ss_pred hHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHccccc----C-C-------CCcchhHH
Q 015780 282 GIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDIL----D-P-------EKKWKRAY 346 (400)
Q Consensus 282 G~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~----~-~-------~~~~~~~~ 346 (400)
|++++++..+|.+.|+ +.|......|....++|..+|+.+++++++++.+|+..- . . +....+-+
T Consensus 124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~ 203 (242)
T PLN02351 124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNG 203 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHH
Confidence 9999999999987665 356555556777889999999999999999999998742 1 1 22334455
Q ss_pred HHHHHHHHHHHHHHHH
Q 015780 347 IGILIFLGAVAALLEA 362 (400)
Q Consensus 347 ~~~~~~~~~~~i~lei 362 (400)
++++.+++++.+++-+
T Consensus 204 ~Glliv~fG~~Vv~~~ 219 (242)
T PLN02351 204 LGLGLALLSGIVILAA 219 (242)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5555555554444444
No 11
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.78 E-value=8.4e-19 Score=155.64 Aligned_cols=132 Identities=24% Similarity=0.245 Sum_probs=112.1
Q ss_pred chhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC-CCCcccccchh
Q 015780 204 RRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP-GIKYNKHRNIG 282 (400)
Q Consensus 204 ~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~lG 282 (400)
+.+++|+.+|.+++++|...++++.|..+.++..+..|+.+|..+|.++++++++|+...+...++.+ ...+|.|+|+|
T Consensus 33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlG 112 (179)
T cd08762 33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVG 112 (179)
T ss_pred CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHH
Confidence 47999999999999999999999998766543345668899999999999999999999998876643 12268999999
Q ss_pred HHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 283 IALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 283 ~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
++++++..+|.+.|+ +-|..+...|....++|+.+|+.+++++++++.+|+..
T Consensus 113 l~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e 168 (179)
T cd08762 113 ICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE 168 (179)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987665 35555545677789999999999999999999999864
No 12
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=99.78 E-value=7.1e-19 Score=153.18 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=112.4
Q ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC--CCCcccccc
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP--GIKYNKHRN 280 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~--~~~~~~H~~ 280 (400)
...+++|++||.+++.+++..+|++.|..+..+..++.+..+|+.+|.+++++.++|+...+...++.+ ++ +|+|+|
T Consensus 9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~f-ySlHSw 87 (153)
T cd08765 9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNM-YSLHSW 87 (153)
T ss_pred CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcc-ccHHHH
Confidence 358999999999999999999999988655433345677899999999999999999999888766543 44 799999
Q ss_pred hhHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 281 IGIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 281 lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
+|++++++..+|.+.|+ +-|......|+...++|+++|+++++++++++.+|+..
T Consensus 88 lGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~e 145 (153)
T cd08765 88 VGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITE 145 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987665 46665555688889999999999999999999999864
No 13
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.77 E-value=1.7e-18 Score=158.86 Aligned_cols=130 Identities=19% Similarity=0.228 Sum_probs=109.8
Q ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCC----CCCCcccc
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDS----PGIKYNKH 278 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~----~~~~~~~H 278 (400)
...+++|.++|.+++.++++.|+++.|.+|.. .++.+..+|+.+|.++++++++|+..++...++. +++ +|.|
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hf-ySlH 97 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNM-YSLH 97 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcc-cchH
Confidence 35799999999999999999999999987753 3456778999999999999999998887765443 233 6999
Q ss_pred cchhHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 279 RNIGIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 279 ~~lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
+|+|++++++..+|.+.|+ +.|......|....++|+++|+++++++++++.+|+..
T Consensus 98 SwlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e 157 (214)
T cd08764 98 SWLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE 157 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988665 46765445576677799999999999999999999865
No 14
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.76 E-value=3.1e-17 Score=139.01 Aligned_cols=111 Identities=22% Similarity=0.323 Sum_probs=90.3
Q ss_pred CCCeEEEEEEecCCCeEEEEEEEecCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCCeEEEEee-cCCCCCCCCCCC--
Q 015780 47 VLNSFLHWNYDQSTNTVDLAFRHTTTSSSRWVAWALNPSGQRMAGSQCLVAFQNSTGRPVAYTTP-IGSGSPTLQPGS-- 123 (400)
Q Consensus 47 ~~~~~l~W~~~~~~~~i~i~~~~~~~~~~gWvA~Gfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~-~~g~~~p~~d~~-- 123 (400)
..++.|+|+++.+++++.|++++.. .+.+|+|+|||++++ |.++|+++|+.+ +|++.++|++ ..++..|..|.+
T Consensus 2 ~~~~~l~w~~~~~~~~i~~~l~~~~-~~~~w~aiGfs~~~~-M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~ 78 (124)
T PF03351_consen 2 DCNFSLSWTVDGDNNTIEFELTGPA-NTNGWVAIGFSDDGG-MGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGS 78 (124)
T ss_pred CceEEEEEEEECCCCEEEEEEEecc-CCCCEEEEEEccccC-CCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccC
Confidence 3468899999977777666666533 248999999999877 999999999997 6999999999 999998988854
Q ss_pred cceeeecceEEEeCCEEEEEEEEecCCCC---------cceeEEEeeC
Q 015780 124 LSFQVPNISATLEGNQWTIFATLQLTNNL---------LSTNQVWQEG 162 (400)
Q Consensus 124 ~~~~l~~~s~~~~~g~~~~~f~~~l~~~~---------~~~~~IwA~G 162 (400)
.++.+. ++.++++.++|.|+|++.+++ .+.++|||+|
T Consensus 79 ~~~~~~--~~~~~~g~~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 79 QDIQLL--SGSYSNGTTTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred CcEEEE--EEEEECCEEEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence 444444 567789999999999998842 4568999987
No 15
>PLN02680 carbon-monoxide oxygenase
Probab=99.74 E-value=1.3e-17 Score=153.90 Aligned_cols=131 Identities=18% Similarity=0.183 Sum_probs=110.6
Q ss_pred cccchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC--CCCcccc
Q 015780 201 SRRRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP--GIKYNKH 278 (400)
Q Consensus 201 ~~~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~--~~~~~~H 278 (400)
++...+++|.+||.+++.++...+++..|..| ..++.+..+|+.+|.+++++.++|+...++..++.+ ++ +|+|
T Consensus 42 ~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~---~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nf-ySlH 117 (232)
T PLN02680 42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVP---GTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNF-YSLH 117 (232)
T ss_pred CCcceEechHHHHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc-ccHH
Confidence 34468999999999999999999999976544 345667899999999999999999999888776543 34 6999
Q ss_pred cchhHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 279 RNIGIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 279 ~~lG~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
+|+|++++++..+|.+.|+ +.|....+.|+...++|+++|+++++++++++.+|+..
T Consensus 118 SWlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~E 177 (232)
T PLN02680 118 SWLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILE 177 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987665 46765445566677899999999999999999999864
No 16
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=99.73 E-value=1.2e-17 Score=144.66 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=111.0
Q ss_pred chhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC--CCCcccccch
Q 015780 204 RRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP--GIKYNKHRNI 281 (400)
Q Consensus 204 ~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~--~~~~~~H~~l 281 (400)
..+++|+++|.+++.+++..++++.|..+.. .++.+.++|+.+|.+++++.++|+...+...++.+ ++ ++.|+|+
T Consensus 5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~--~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf-~SlHswl 81 (143)
T cd08763 5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNE--TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDM-YSLHSWC 81 (143)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcc-ccHHHHH
Confidence 4899999999999999999999999876543 34566789999999999999999999887665432 44 7999999
Q ss_pred hHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 282 GIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 282 G~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
|++++++..+|.+.|+ +-|....+.|..++++|+++|+++++++++++.+|+..
T Consensus 82 Gl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e 138 (143)
T cd08763 82 GILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTE 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988665 46765556688899999999999999999999999863
No 17
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=99.65 E-value=2.1e-16 Score=144.53 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=113.6
Q ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC-CCCcccccch
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP-GIKYNKHRNI 281 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~l 281 (400)
++.+++|+++|.++|.++...++++.|.+|.. .++.-+.+|..+|+.+.+++++|+...+...+..+ ...++.|+|+
T Consensus 52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl 129 (245)
T KOG1619|consen 52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL 129 (245)
T ss_pred chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence 57899999999999999999999999998865 34555689999999999999999998888766543 1237999999
Q ss_pred hHHHHHHHHHHHhhee---eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 282 GIALFAIGTLQMFAML---LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 282 G~~~~~l~~~Q~l~~~---~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
|+.++.+..+|.+.|+ +.|.-..+.|....++|+.+|..+++++++|+.+|+..
T Consensus 130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~e 186 (245)
T KOG1619|consen 130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLE 186 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999977555 56776667899999999999999999999999999954
No 18
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=99.60 E-value=9.7e-15 Score=118.49 Aligned_cols=99 Identities=53% Similarity=0.805 Sum_probs=92.7
Q ss_pred CCCCcEEEEEECCC-CCeEEEEeecCCCCCCCCCCCcceeeecceEEEeCCEEEEEEEEecCCCCcceeEEEeeCCCC-C
Q 015780 89 MAGSQCLVAFQNST-GRPVAYTTPIGSGSPTLQPGSLSFQVPNISATLEGNQWTIFATLQLTNNLLSTNQVWQEGPMN-G 166 (400)
Q Consensus 89 M~gsd~vI~~~~~~-G~v~v~~~~~~g~~~p~~d~~~~~~l~~~s~~~~~g~~~~~f~~~l~~~~~~~~~IwA~G~~~-~ 166 (400)
|.|++++|++++++ |.+.+++|.++++..+....++++++.+.+++++++.++||++.+|+.+.+++|++|++|+.+ +
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n~t~vnhVWQ~G~~v~g 80 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGNSTSVNHVWQVGPSVQG 80 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCCCCcEEEEEeCcCCccCC
Confidence 99999999999987 889999999999988676677889999999999999999999999999999999999999988 8
Q ss_pred CCCCCCCCCCCCCccceeEec
Q 015780 167 DTPGAHAMSGDNARSVGTIDF 187 (400)
Q Consensus 167 ~~l~~H~~~g~n~~s~~~ldl 187 (400)
+.+..|+..++|+.|..+|||
T Consensus 81 g~p~~H~~~~~Nl~S~gtldl 101 (101)
T PF04526_consen 81 GSPQPHPTSGANLQSKGTLDL 101 (101)
T ss_pred CccccCCCCCccccceEEecC
Confidence 999999999999999999997
No 19
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=99.36 E-value=1.6e-11 Score=110.53 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCeEEEEEEecC---CCeEEEEEEEecCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCCeEEEEeecCCCCCCC-CCCC
Q 015780 48 LNSFLHWNYDQS---TNTVDLAFRHTTTSSSRWVAWALNPSGQRMAGSQCLVAFQNSTGRPVAYTTPIGSGSPTL-QPGS 123 (400)
Q Consensus 48 ~~~~l~W~~~~~---~~~i~i~~~~~~~~~~gWvA~Gfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~-~d~~ 123 (400)
.++++...+..+ ++.-++.++++.|.+.||+|+|. |.+|.|+.++|+|.+++ +++++.|+.+||.+|. .+++
T Consensus 22 ~~itfgialP~~a~s~~~~d~i~qi~aP~~~gW~gls~---Gg~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~ 97 (184)
T cd00241 22 HDVTYGIVLPPDALGADSTEFIGELVAPRASGWIGLAL---GGAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGP 97 (184)
T ss_pred CCeEEEEEcCCcccCCCCCCEEEEEeCcCCCCeEEEee---cccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCC
Confidence 356666665322 13458999999999999999998 56799999999999754 5999999999999994 4555
Q ss_pred cceeeecceEEEeCCEE----EEEEEEecC-CCC----cceeEEEeeCCC---C----CCCCCCCCCCCCCCccceeEec
Q 015780 124 LSFQVPNISATLEGNQW----TIFATLQLT-NNL----LSTNQVWQEGPM---N----GDTPGAHAMSGDNARSVGTIDF 187 (400)
Q Consensus 124 ~~~~l~~~s~~~~~g~~----~~~f~~~l~-~~~----~~~~~IwA~G~~---~----~~~l~~H~~~g~n~~s~~~ldl 187 (400)
..++++..++ ..++++ +|..|.+|+ ++. +...++||.++. + +..+.+|+.+ +.+.+||
T Consensus 98 a~~t~L~gs~-vn~t~~t~~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~-----G~f~~dl 171 (184)
T cd00241 98 ATITQLPSSS-VNSTHWKLVFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDF-----GFFGINL 171 (184)
T ss_pred ceEEECCCCc-EeCCEEEEEEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCC-----cceeEec
Confidence 5677776554 357766 466677786 321 222689998621 1 5679999855 4589999
Q ss_pred ccC
Q 015780 188 RTG 190 (400)
Q Consensus 188 ~~g 190 (400)
...
T Consensus 172 ~~A 174 (184)
T cd00241 172 SDA 174 (184)
T ss_pred hhc
Confidence 854
No 20
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=99.29 E-value=8.5e-12 Score=102.63 Aligned_cols=88 Identities=22% Similarity=0.392 Sum_probs=75.4
Q ss_pred cccchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCC-Cccccc
Q 015780 201 SRRRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGI-KYNKHR 279 (400)
Q Consensus 201 ~~~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~-~~~~H~ 279 (400)
+.+...++|+++|.++|++++|+|+++.+. | . ++|..+|++.+++.++|+.++....++.+++ .++.|.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------s---r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~lyp~n~H~ 82 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------S---RWHLPVQTVFLVLMILGLFLGSVYNGSTPDLYPNNAHG 82 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------c---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHH
Confidence 356789999999999999999999998664 2 2 3499999999999999999998876665444 579999
Q ss_pred chhHHHHHHHHHHHhheee
Q 015780 280 NIGIALFAIGTLQMFAMLL 298 (400)
Q Consensus 280 ~lG~~~~~l~~~Q~l~~~~ 298 (400)
++|.++++++++|++.+++
T Consensus 83 k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 83 KMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987764
No 21
>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]
Probab=99.17 E-value=2e-10 Score=113.83 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=98.7
Q ss_pred ccccccccCCCC-CeEEEEEEecCCCeEEEEEEEecCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCCeEEEEeecCCC
Q 015780 37 KVYSTCTDLPVL-NSFLHWNYDQSTNTVDLAFRHTTTSSSRWVAWALNPSGQRMAGSQCLVAFQNSTGRPVAYTTPIGSG 115 (400)
Q Consensus 37 ~~~~~C~~l~~~-~~~l~W~~~~~~~~i~i~~~~~~~~~~gWvA~Gfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~ 115 (400)
..|.....++.. .++|+|.++...+.++|.++.. +.+|++||||+.|. |.+||+++.|.+ .+...+.|+|.+..
T Consensus 31 s~~~~h~~~~~e~~~~lsW~vdy~~q~i~F~l~~~---t~~~v~fGfSdrG~-lanaDivv~~n~-g~~~~~~DayTn~d 105 (603)
T KOG3568|consen 31 STYPHHTLLDSEGKYWLSWSVDYRGQQIAFRLQVR---TAGYVGFGFSDRGA-LANADIVVGGNA-GGRPYLQDAYTNAD 105 (603)
T ss_pred CCccceeeecCCCcEEEEEeeccccceeEEEEEec---cCCEEEEecCCcCC-cccCcEEEEecc-CCchhhhhhhcCCC
Confidence 456677765555 4899999988888877777664 78999999999998 999999999985 45689999999888
Q ss_pred CCCCCCCCcceeeecceEEEeCCEEEEEEEEecCCC--------CcceeEEEeeCCCC--CCCCCCCCC
Q 015780 116 SPTLQPGSLSFQVPNISATLEGNQWTIFATLQLTNN--------LLSTNQVWQEGPMN--GDTPGAHAM 174 (400)
Q Consensus 116 ~~p~~d~~~~~~l~~~s~~~~~g~~~~~f~~~l~~~--------~~~~~~IwA~G~~~--~~~l~~H~~ 174 (400)
.+-..|.++|++++.. ......+++.|+|++.+= ++++.++||.-... +....+|+.
T Consensus 106 ~qi~~D~QQDyqll~~--~e~~~~~~i~frRkl~TCDp~Dy~i~dgTv~vv~a~~eed~r~l~~v~~~~ 172 (603)
T KOG3568|consen 106 GQIKKDAQQDYQLLYA--MENSTHTIIEFRRKLHTCDPNDYSITDGTVRVVWAYLEEDARELGPVYHDS 172 (603)
T ss_pred CceecchhhhhHHHhh--hccCCccEEEEecccCcCCccceeccCCeEEEEEEEeccchhhcccccccc
Confidence 8888888888888742 222234568899998872 47889999965432 334445554
No 22
>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.21 E-value=0.039 Score=50.21 Aligned_cols=97 Identities=14% Similarity=0.049 Sum_probs=65.3
Q ss_pred CcchhhhhHhHHHHHHHHHH-HHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHH
Q 015780 238 NPAWFYLHVACQASGYIVGV-AGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWS 316 (400)
Q Consensus 238 ~~~Wf~~H~~~q~~~~~~~i-~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~ 316 (400)
....++.|..++++++.+.. +|..++-+.....+.+ ...|..+=++.+++.++=...++... + +.+..++..|.+
T Consensus 32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~-~~~H~~~q~~~~~~~i~g~~~~~~~~-~--~~~~~~~~~H~~ 107 (191)
T cd08760 32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVW-FYLHAGLQLLAVLLAIAGFVLGIVLV-Q--GGGGSLNNAHAI 107 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhh-c--cCCCCCcCcchh
Confidence 34568999999999988765 4554442221112223 36898888776666665554444322 1 224557789999
Q ss_pred HHHHHHHHHHHHHHHcccccCC
Q 015780 317 LGYSVIVLSIINIFEGFDILDP 338 (400)
Q Consensus 317 ~G~~~~~lg~~ni~~Gl~l~~~ 338 (400)
+|.+++++.++|...|+.....
T Consensus 108 lGl~~~~l~~lQ~~~G~~~~~~ 129 (191)
T cd08760 108 LGIIVLALAILQPLLGLLRPHP 129 (191)
T ss_pred hhHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999876543
No 23
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=96.12 E-value=0.048 Score=47.44 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=66.1
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhhhhccc-CCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHH
Q 015780 241 WFYLHVACQASGYIVGVAGWGTGIKLGN-DSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGY 319 (400)
Q Consensus 241 Wf~~H~~~q~~~~~~~i~g~~l~~~~~~-~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~ 319 (400)
=|.+|..+|++|+++...--++.+.... .++......|.++.++.+++.++=....+...++ .+ .+-+...|-|+|.
T Consensus 6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~-~~-~~hf~SlHswlGl 83 (143)
T cd08763 6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQA-NG-YPDMYSLHSWCGI 83 (143)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccc-cC-CCccccHHHHHHH
Confidence 4789999999999987765555554322 1222234689999999998887665544422222 22 3446779999999
Q ss_pred HHHHHHHHHHHHccccc
Q 015780 320 SVIVLSIINIFEGFDIL 336 (400)
Q Consensus 320 ~~~~lg~~ni~~Gl~l~ 336 (400)
+++++-..|...|+...
T Consensus 84 ~t~~L~~lQ~~~G~~~f 100 (143)
T cd08763 84 LTFVLYFLQWLIGFSFF 100 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997653
No 24
>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain. Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.
Probab=96.10 E-value=0.041 Score=46.77 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=61.0
Q ss_pred hhHhHHHHHHHHHHH-HHhhhhhcccC-CCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHH
Q 015780 244 LHVACQASGYIVGVA-GWGTGIKLGND-SPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSV 321 (400)
Q Consensus 244 ~H~~~q~~~~~~~i~-g~~l~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~ 321 (400)
+|..++++++++... |..+.-..... .+......|.++.++.+++.++=...++...++.+ ++-++..|.++|.++
T Consensus 1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~--~~~~~s~H~~lGl~~ 78 (129)
T smart00665 1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESG--IANFYSLHSWLGLAA 78 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CCCccchhHHHHHHH
Confidence 489999999866554 44333211111 11122468999988887777665544443322211 345778999999999
Q ss_pred HHHHHHHHHHcccccCCC
Q 015780 322 IVLSIINIFEGFDILDPE 339 (400)
Q Consensus 322 ~~lg~~ni~~Gl~l~~~~ 339 (400)
+++..+|...|+.....+
T Consensus 79 ~~l~~~Q~~~G~~~~~~~ 96 (129)
T smart00665 79 FVLAGLQWLSGFLRPLPP 96 (129)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999998866443
No 25
>cd08554 Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.
Probab=96.04 E-value=0.041 Score=46.86 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=62.6
Q ss_pred hhhhHhHHHHHHHHHHHHHhhhhhcccC-CCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHH
Q 015780 242 FYLHVACQASGYIVGVAGWGTGIKLGND-SPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYS 320 (400)
Q Consensus 242 f~~H~~~q~~~~~~~i~g~~l~~~~~~~-~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 320 (400)
|..|..++++++++...--++.....+. .+......|..+.++.+++.++=....+..... +.++-+...|.++|.+
T Consensus 2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~Hs~lGl~ 79 (131)
T cd08554 2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNA--GGIANLYSLHSWLGLA 79 (131)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCcccchhHHHHHHHH
Confidence 4679999999987655443344333211 111224689999998888777665544433222 1234466789999999
Q ss_pred HHHHHHHHHHHccccc
Q 015780 321 VIVLSIINIFEGFDIL 336 (400)
Q Consensus 321 ~~~lg~~ni~~Gl~l~ 336 (400)
++++..+|...|+...
T Consensus 80 ~~~l~~~q~~~G~~~~ 95 (131)
T cd08554 80 TVLLFLLQFLSGFVLF 95 (131)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997764
No 26
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=95.87 E-value=0.088 Score=47.38 Aligned_cols=88 Identities=16% Similarity=0.090 Sum_probs=54.3
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhh---cccCCCCCCcccccchhHHHHHHHHHHHhhe-eeccCCCCCCcccchhhhHHHH
Q 015780 243 YLHVACQASGYIVGVAGWGTGIK---LGNDSPGIKYNKHRNIGIALFAIGTLQMFAM-LLRPKPDHKYRLYWNIYHWSLG 318 (400)
Q Consensus 243 ~~H~~~q~~~~~~~i~g~~l~~~---~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~-~~rp~~~~~~r~~~~~~H~~~G 318 (400)
..|.-.-...+.++..+..-|.. ..+ +....++|-+.|+.+..|+.++.... .+.+.+ ++.+...|..++
T Consensus 81 ~~H~~~g~~ll~~~~L~~lGG~~~~~~~~--~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~----~~~~R~lHi~lN 154 (175)
T PF13301_consen 81 DRHYRLGFALLAFMGLGALGGQLGTYRQN--GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGN----RPWARRLHIYLN 154 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHcC--CCCccCchHHHHHHHHHHHHHHHHHHHHHccCC----chhHHHHHHHHH
Confidence 45655544444443333333322 222 22346889999999998888885332 232222 345667999999
Q ss_pred HHHHHHHHHHHHHccccc
Q 015780 319 YSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 319 ~~~~~lg~~ni~~Gl~l~ 336 (400)
.+++++-..+..+|..+.
T Consensus 155 ~~~l~Lf~~q~itG~~il 172 (175)
T PF13301_consen 155 SLALLLFAWQAITGWRIL 172 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 27
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.78 E-value=0.082 Score=49.08 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=64.1
Q ss_pred cchhhhhHhHHHHHHHHHHHHHhhhhhcccCC-CCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHH
Q 015780 239 PAWFYLHVACQASGYIVGVAGWGTGIKLGNDS-PGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSL 317 (400)
Q Consensus 239 ~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~-~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~ 317 (400)
...|.+|..+|++|+++...=-++.+...... +......|..+..+.+++.++=....+-..++..+..+-+...|-|+
T Consensus 21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwl 100 (214)
T cd08764 21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWL 100 (214)
T ss_pred CceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHH
Confidence 35799999999999977655444544433211 11123489999999988887664443321122111223355689999
Q ss_pred HHHHHHHHHHHHHHcccc
Q 015780 318 GYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 318 G~~~~~lg~~ni~~Gl~l 335 (400)
|.+++++-..|...|+..
T Consensus 101 Gl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 101 GLTAVILFSLQWVGGFVS 118 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999743
No 28
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.78 E-value=0.062 Score=46.81 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=62.0
Q ss_pred chhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHH
Q 015780 240 AWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGY 319 (400)
Q Consensus 240 ~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~ 319 (400)
..|.+|..+|++|+++...=-++.+.....++......|.++=++.+++.++=....+ +.+...+ .+-+..+|-|+|.
T Consensus 6 ~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf-~~~~~~~-~~~~~SlHSwlGl 83 (144)
T cd08766 6 LIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAF-KFHNEVG-IPNLYSLHSWLGI 83 (144)
T ss_pred ceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhcccC-ccccccHHHHHHH
Confidence 4689999999999877665445555543222222245888887777776665543333 2222222 2335568999999
Q ss_pred HHHHHHHHHHHHccc
Q 015780 320 SVIVLSIINIFEGFD 334 (400)
Q Consensus 320 ~~~~lg~~ni~~Gl~ 334 (400)
+++++-..|...|+.
T Consensus 84 ~t~~L~~lQ~~~G~~ 98 (144)
T cd08766 84 GTISLFGLQWLFGFV 98 (144)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999975
No 29
>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product. Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.55 E-value=0.084 Score=47.78 Aligned_cols=95 Identities=13% Similarity=0.176 Sum_probs=65.3
Q ss_pred cchhhhhHhHHHHHHHHHHHHHhhhhhcccC----CCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhh
Q 015780 239 PAWFYLHVACQASGYIVGVAGWGTGIKLGND----SPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYH 314 (400)
Q Consensus 239 ~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~----~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H 314 (400)
...|.+|..+|.+++.+....-++.+...+. ++......|.++-++.+++.++=....+.- +. .+.++-++-.|
T Consensus 18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~-~~-~~~~~hf~s~H 95 (183)
T cd08761 18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN-KE-RNGKPHFTSWH 95 (183)
T ss_pred cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-cc-cCCCCCccchh
Confidence 3468999999999998877665555442211 122224689999998888776554333322 21 12244567789
Q ss_pred HHHHHHHHHHHHHHHHHcccc
Q 015780 315 WSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 315 ~~~G~~~~~lg~~ni~~Gl~l 335 (400)
.|+|.+++++...|...|+..
T Consensus 96 ~~lGl~~~~l~~~Q~~~G~~~ 116 (183)
T cd08761 96 GILGLVTVILIVLQALGGLAL 116 (183)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999854
No 30
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=95.46 E-value=0.3 Score=43.96 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=63.0
Q ss_pred CcchhhhhHhHHHHHHHHHHHHHhhhhhccc-C--CCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhh
Q 015780 238 NPAWFYLHVACQASGYIVGVAGWGTGIKLGN-D--SPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYH 314 (400)
Q Consensus 238 ~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~-~--~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H 314 (400)
++..|.+|-.+|++|+++...=.++.+.... + ++...+..|..+=.+.+++.++-....+ +.+...+ .+-...+|
T Consensus 31 ~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf-~~hn~~~-~~nlySlH 108 (179)
T cd08762 31 SSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVF-NFHNVHH-TANLYSLH 108 (179)
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HhccccC-ccchhhHH
Confidence 3447999999999999987544445444221 1 1112246788887777777665544433 2222222 22234479
Q ss_pred HHHHHHHHHHHHHHHHHccccc
Q 015780 315 WSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 315 ~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
-|+|..++++-..|...|+...
T Consensus 109 SWlGl~t~~Lf~lQ~~~Gf~~f 130 (179)
T cd08762 109 SWVGICTVALFTCQWVMGFTSF 130 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998654
No 31
>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []. It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane
Probab=95.32 E-value=0.11 Score=44.36 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=59.5
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhcc-c--CCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHH
Q 015780 244 LHVACQASGYIVGVAGWGTGIKLG-N--DSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYS 320 (400)
Q Consensus 244 ~H~~~q~~~~~~~i~g~~l~~~~~-~--~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 320 (400)
+|..++++|+.+...--++..... . ..+......|.++-++.+++.++=....+..... +...-++..|.++|.+
T Consensus 1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~H~~lG~~ 78 (137)
T PF03188_consen 1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNR--NGKPHFKSWHSILGLA 78 (137)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCCCCCCchhhhhHH
Confidence 499999999887664333333321 1 1112224689988887777666655444332111 1234567799999999
Q ss_pred HHHHHHHHHHHccccc
Q 015780 321 VIVLSIINIFEGFDIL 336 (400)
Q Consensus 321 ~~~lg~~ni~~Gl~l~ 336 (400)
++++.+.|...|+...
T Consensus 79 ~~~l~~~Q~~~G~~~~ 94 (137)
T PF03188_consen 79 TFVLALLQPLLGFFRF 94 (137)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
No 32
>PLN02680 carbon-monoxide oxygenase
Probab=95.26 E-value=0.14 Score=48.02 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=61.9
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHH
Q 015780 241 WFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYS 320 (400)
Q Consensus 241 Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 320 (400)
=|.+|-.+|++|+++...-.++.+.....++......|..+=.+.+++.++-.... ++.+...+ +.-+..+|-|+|.+
T Consensus 46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~av-fk~hn~~~-~~nfySlHSWlGl~ 123 (232)
T PLN02680 46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAA-LKFHNEKG-IDNFYSLHSWLGLA 123 (232)
T ss_pred eEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccccC-ccccccHHHHHHHH
Confidence 47899999999999966545555443222222334578877777777665544332 33322222 33455689999999
Q ss_pred HHHHHHHHHHHcccc
Q 015780 321 VIVLSIINIFEGFDI 335 (400)
Q Consensus 321 ~~~lg~~ni~~Gl~l 335 (400)
++++-..|...|+..
T Consensus 124 t~iL~~lQ~~~Gf~~ 138 (232)
T PLN02680 124 CLFLFSLQWAAGFVT 138 (232)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999765
No 33
>PLN02810 carbon-monoxide oxygenase
Probab=93.87 E-value=0.39 Score=44.84 Aligned_cols=92 Identities=20% Similarity=0.103 Sum_probs=62.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHH
Q 015780 241 WFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYS 320 (400)
Q Consensus 241 Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 320 (400)
=|.+|-.+|++|+++.-.=-++.+......+......|..+=.+.+++.++-....+ +.|...+ .+-.-.+|-|+|..
T Consensus 46 ~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf-~~Hn~~~-i~nlySLHSWlGl~ 123 (231)
T PLN02810 46 IFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAF-KNHNESG-IANLYSLHSWLGIG 123 (231)
T ss_pred eeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HhccccC-CCceeeHHHHHHHH
Confidence 489999999999988766555555432212223346788877777776665544433 3332222 23355699999999
Q ss_pred HHHHHHHHHHHccc
Q 015780 321 VIVLSIINIFEGFD 334 (400)
Q Consensus 321 ~~~lg~~ni~~Gl~ 334 (400)
++++-..|-..|+-
T Consensus 124 tv~Lf~lQw~~Gf~ 137 (231)
T PLN02810 124 IISLYGIQWIYGFI 137 (231)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999983
No 34
>PLN02351 cytochromes b561 family protein
Probab=93.83 E-value=0.63 Score=43.84 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=60.0
Q ss_pred chhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHH
Q 015780 240 AWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGY 319 (400)
Q Consensus 240 ~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~ 319 (400)
..|.+|-.+|++|+++...=-++.+.....++......|..+=.+.+++.++-... ..+...+..+-.-..|-|+|.
T Consensus 49 iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a---~fh~~~~~i~nlySLHSWlGl 125 (242)
T PLN02351 49 VYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT---KFHGQDGIVANFYSLHSWMGL 125 (242)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHH---HHhcccCCccchhHHHHHHHH
Confidence 33479999999999987665555555432222223457777766666655444333 222222212334557999999
Q ss_pred HHHHHHHHHHHHccccc
Q 015780 320 SVIVLSIINIFEGFDIL 336 (400)
Q Consensus 320 ~~~~lg~~ni~~Gl~l~ 336 (400)
.++++=.+|-..|+...
T Consensus 126 ~tv~Lf~lQwv~Gf~~F 142 (242)
T PLN02351 126 ICVSLFGAQWLTGFMSF 142 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999997644
No 35
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=92.98 E-value=0.49 Score=44.27 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc-cCCc-chhhhhHhHHHHHHHHHHHHHhhhhhc-ccCCCCCCcccccchhHHHHHHHH
Q 015780 214 AVSWGVLIPMGAMIARYLKVFK-TANP-AWFYLHVACQASGYIVGVAGWGTGIKL-GNDSPGIKYNKHRNIGIALFAIGT 290 (400)
Q Consensus 214 ~~aw~il~P~gil~aR~~k~~~-~~~~-~Wf~~H~~~q~~~~~~~i~g~~l~~~~-~~~~~~~~~~~H~~lG~~~~~l~~ 290 (400)
.+++....-.+..+.-|...+. ..++ .=|.+|-.+|++|++..-.=.++.+.. ...++...+-.|..+=++.+++.+
T Consensus 25 l~G~i~v~lvl~W~~~yr~Glaw~~~~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i 104 (245)
T KOG1619|consen 25 LLGFITVVLVLYWVNTYRGGLAWSSSPNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAI 104 (245)
T ss_pred HHHHHHHHHHHHHHHHcCCccCCCCCcchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433231 1222 348899999999888744322333333 233333445689888888888877
Q ss_pred HHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHccccc
Q 015780 291 LQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 291 ~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
+-....+...+..+ . .-+-.+|-|+|..++++=.+|-..|+--+
T Consensus 105 ~gl~avf~~hn~~~-i-~NfySLHSWlGl~~v~ly~~Q~v~GF~tf 148 (245)
T KOG1619|consen 105 IGLCAVFDSHNLVG-I-ANFYSLHSWLGLCVVILYSLQWVFGFFTF 148 (245)
T ss_pred HHHHHHHHHhhhcC-c-cceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555543222222 2 22456999999999999999999997654
No 36
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=92.67 E-value=0.79 Score=40.34 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=58.8
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhhhhcc-c--CCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHH
Q 015780 241 WFYLHVACQASGYIVGVAGWGTGIKLG-N--DSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSL 317 (400)
Q Consensus 241 Wf~~H~~~q~~~~~~~i~g~~l~~~~~-~--~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~ 317 (400)
=|.+|-.+|++|+++.-.=.++.+... . .++......|.++=.+.+++.++=....+ ..+...+ .+-+...|-|+
T Consensus 11 ~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf-~~hn~~~-~~~fySlHSwl 88 (153)
T cd08765 11 EFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVF-VFHNAKN-IPNMYSLHSWV 88 (153)
T ss_pred eeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHccccC-CCccccHHHHH
Confidence 478999999999888444334443311 0 11222245777766666655554433322 2222222 34466799999
Q ss_pred HHHHHHHHHHHHHHccccc
Q 015780 318 GYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 318 G~~~~~lg~~ni~~Gl~l~ 336 (400)
|.+++++-..|...|+..+
T Consensus 89 Gl~t~~l~~lQ~~~Gf~~f 107 (153)
T cd08765 89 GLAAVILYPLQLVLGISVY 107 (153)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997655
No 37
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=92.21 E-value=0.25 Score=44.08 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=59.9
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhh----cccCC-CCCCcccccchhHHHHHHHHHHHhheeec------------------
Q 015780 243 YLHVACQASGYIVGVAGWGTGIK----LGNDS-PGIKYNKHRNIGIALFAIGTLQMFAMLLR------------------ 299 (400)
Q Consensus 243 ~~H~~~q~~~~~~~i~g~~l~~~----~~~~~-~~~~~~~H~~lG~~~~~l~~~Q~l~~~~r------------------ 299 (400)
..|+..-++-+++.+.|+.+... ..... .......|.++|++.+++.++..+..+.+
T Consensus 10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T PF00033_consen 10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR 89 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence 46877766666666777766422 11111 11124789999999999999888766555
Q ss_pred cC--CCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 300 PK--PDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 300 p~--~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
+. ++.+.....|...++.-.+++++..+.+.+|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~ 127 (188)
T PF00033_consen 90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM 127 (188)
T ss_dssp TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122344567888888889999999999999888
No 38
>COG2717 Predicted membrane protein [Function unknown]
Probab=90.63 E-value=4.2 Score=37.57 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcc---cCC---CCCCcccccchhHH
Q 015780 211 VLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLG---NDS---PGIKYNKHRNIGIA 284 (400)
Q Consensus 211 ~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~---~~~---~~~~~~~H~~lG~~ 284 (400)
-..++.|..++=.....+|+.+ .+.+.++=+.+-+.++..++.=+..-+... +-+ .+..+.+=-.+|++
T Consensus 48 g~~al~fLl~~la~tp~~~~~~-----~~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~i 122 (209)
T COG2717 48 GIWALIFLLVTLAVTPLARLLK-----QPKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMI 122 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHH
Confidence 3444555555555556667654 355666777777777666554332211110 000 11123455577877
Q ss_pred HHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccCCCCcchhHHHHHHHHH
Q 015780 285 LFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDPEKKWKRAYIGILIFL 353 (400)
Q Consensus 285 ~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~~~~~~~~~~~~~~~ 353 (400)
.+++++.-.+..+---.++-. +.|+.+|++ +|.++++|.+=...+... +..+.+.|.++.+++
T Consensus 123 aflll~pLalTS~k~~~rrlG--~rW~~LHrL-vYl~~~L~~lH~~~s~K~---~~~~~vlY~ii~~~l 185 (209)
T COG2717 123 AFLLLIPLALTSFKWVRRRLG--KRWKKLHRL-VYLALILGALHYLWSVKI---DMPEPVLYAIIFAVL 185 (209)
T ss_pred HHHHHHHHHHHhhHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHH
Confidence 777776555543311111111 459999986 688888888888874432 223345565444433
No 39
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=90.47 E-value=0.85 Score=37.25 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=25.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 307 RLYWNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 307 r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
|+.....|+++||+-+++..+....|+.+..
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~ 32 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAF 32 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445679999999999999999999988764
No 40
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=89.68 E-value=1.9 Score=35.46 Aligned_cols=88 Identities=19% Similarity=0.261 Sum_probs=52.2
Q ss_pred CCcchhhhhHhHHHHHHHHHH-HHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhH
Q 015780 237 ANPAWFYLHVACQASGYIVGV-AGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHW 315 (400)
Q Consensus 237 ~~~~Wf~~H~~~q~~~~~~~i-~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~ 315 (400)
+.+..++.|..+|++++++.. +|++++... + ++|.-.=++-+++.++-.+.+.....+ .+ .-+.+-.|.
T Consensus 13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~---s-----r~~~~~q~~~~~l~~~g~~~g~~~~~~-~p-~lyp~n~H~ 82 (105)
T PF10348_consen 13 PHRSALYAHIVLMTLAWVILYPIGLVLGNAR---S-----RWHLPVQTVFLVLMILGLFLGSVYNGS-TP-DLYPNNAHG 82 (105)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c-----hHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-CCCCCCHHH
Confidence 356678999999999876644 466655332 1 223332222222222222222221111 11 135688999
Q ss_pred HHHHHHHHHHHHHHHHccc
Q 015780 316 SLGYSVIVLSIINIFEGFD 334 (400)
Q Consensus 316 ~~G~~~~~lg~~ni~~Gl~ 334 (400)
-+|++++++.++|..+|+.
T Consensus 83 k~g~il~~l~~~q~~~gv~ 101 (105)
T PF10348_consen 83 KMGWILFVLMIVQVILGVI 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999874
No 41
>COG5658 Predicted integral membrane protein [Function unknown]
Probab=87.59 E-value=2.6 Score=38.70 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=44.8
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015780 305 KYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDPEKKWKRAYIGILIFLGAVAALLEAITWVIVLKRK 372 (400)
Q Consensus 305 ~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~~~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~ 372 (400)
+.+..|++.|+++|-..++.+.+....+.....+..-+...+...++.+....+.+-+..|....+++
T Consensus 40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~~~~~Il~li~~ls~~l~~~g~d~~ 107 (204)
T COG5658 40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALFAAVLILFLILLLSAILVALGYDIP 107 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 34567999999999999999999999998776665445555544444444434444444444444433
No 42
>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes. The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.
Probab=86.40 E-value=3.5 Score=36.55 Aligned_cols=129 Identities=17% Similarity=0.087 Sum_probs=71.8
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHh---hhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhc---------------
Q 015780 205 RRNTHGVLNAVSWGVLIPMGAMIARY---LKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKL--------------- 266 (400)
Q Consensus 205 ~~~~Hg~lm~~aw~il~P~gil~aR~---~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~--------------- 266 (400)
.+..| +++++++.+++..|..+... ...........+.+|..+-.+-.++.+.=+...+..
T Consensus 8 ~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T PF00033_consen 8 TRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP 86 (188)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence 34555 47888999999999887521 111111234567899887665444433333333332
Q ss_pred ---cc-----CCCCCCcccccchhHHHHHHHHHHHhheeec--------cCC---CCCCcccchhhhHHHHHHHHHHHHH
Q 015780 267 ---GN-----DSPGIKYNKHRNIGIALFAIGTLQMFAMLLR--------PKP---DHKYRLYWNIYHWSLGYSVIVLSII 327 (400)
Q Consensus 267 ---~~-----~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~r--------p~~---~~~~r~~~~~~H~~~G~~~~~lg~~ 327 (400)
.. ......+...++.-++++.+++++++.|+.. +.. ....+.....+|.+.+.+++++-.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~ 166 (188)
T PF00033_consen 87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII 166 (188)
T ss_dssp HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111224566677777777778887766544 111 1123456777888888877776666
Q ss_pred HHHHccc
Q 015780 328 NIFEGFD 334 (400)
Q Consensus 328 ni~~Gl~ 334 (400)
=++..+.
T Consensus 167 Hi~~a~~ 173 (188)
T PF00033_consen 167 HIYAAIF 173 (188)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 43
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=86.16 E-value=0.85 Score=29.37 Aligned_cols=30 Identities=20% Similarity=0.394 Sum_probs=25.6
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHccccc
Q 015780 307 RLYWNIYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 307 r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
|+.+..+|+++|..+.+.-.+-+.+|+.+.
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~ 31 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLALTGALLN 31 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999888887664
No 44
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=86.11 E-value=1.4 Score=38.05 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCccccccCCCCCCCCCCCCCCCC
Q 015780 345 AYIGILIFLGAVAALLEAITWVIVLKRKNG--NSVKHHHSINGANGANGYGARTQQGA 400 (400)
Q Consensus 345 ~~~~~~~~~~~~~i~lei~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (400)
.|++++.+.+.+.++.-.+.|...||||+. -+++.-|.|+-.+-..=.|+-||.|+
T Consensus 31 m~tILiaIvVliiiiivli~lcssRKkKaaAAi~eediQfinpyqDqqw~~v~pqPgt 88 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIVLIYLCSSRKKKAAAAIEEEDIQFINPYQDQQWAGVTPQPGT 88 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhhhhcccccCcccchhhccCCCCCCC
Confidence 344444444333444444557777776664 22445888988888888888888763
No 45
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=85.88 E-value=7.9 Score=34.85 Aligned_cols=70 Identities=19% Similarity=0.117 Sum_probs=51.3
Q ss_pred cccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccCCCC-cchhHH
Q 015780 275 YNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDPEK-KWKRAY 346 (400)
Q Consensus 275 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~~-~~~~~~ 346 (400)
...|..+|..+++++.+-.++|..--...+ .+.+..-|-|.|..+..|=.++..+.-.+...++ .|..+-
T Consensus 80 r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~--~~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~~~~R~lH 150 (175)
T PF13301_consen 80 RDRHYRLGFALLAFMGLGALGGQLGTYRQN--GKLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNRPWARRLH 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHcC--CCCccCchHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHH
Confidence 478999999999999999888763111111 1255667999999999999999999988875433 455433
No 46
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=82.99 E-value=5 Score=38.73 Aligned_cols=83 Identities=24% Similarity=0.343 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhhhhhccc---CCCCCCcccccchhHHHHHHHHHHHhheeec---cCCCCCCcccchhhhHHHHHH
Q 015780 247 ACQASGYIVGVAGWGTGIKLGN---DSPGIKYNKHRNIGIALFAIGTLQMFAMLLR---PKPDHKYRLYWNIYHWSLGYS 320 (400)
Q Consensus 247 ~~q~~~~~~~i~g~~l~~~~~~---~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~r---p~~~~~~r~~~~~~H~~~G~~ 320 (400)
.+-.+..++.++|++-.+.+-. +.+.+..--|-..|+...+-.++-.+.-+.| ..-..|.|+.|.+ .
T Consensus 156 ~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~~-------l 228 (347)
T PF10951_consen 156 ILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWPK-------L 228 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhHH-------H
Confidence 4445677888888888877543 2233323568888888877666665555544 3334455666654 4
Q ss_pred HHHHHHHHHHHccccc
Q 015780 321 VIVLSIINIFEGFDIL 336 (400)
Q Consensus 321 ~~~lg~~ni~~Gl~l~ 336 (400)
++++|-+++..|+...
T Consensus 229 Vl~mGsi~~l~Gl~vl 244 (347)
T PF10951_consen 229 VLVMGSISILWGLYVL 244 (347)
T ss_pred HHHHhhHHHHhhhheE
Confidence 5566666666666554
No 47
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=82.38 E-value=8.9 Score=37.02 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=66.7
Q ss_pred ccccchhHHHHHHHHHHHh-hee-eccC------CCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccCC--CCcchh-
Q 015780 276 NKHRNIGIALFAIGTLQMF-AML-LRPK------PDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDP--EKKWKR- 344 (400)
Q Consensus 276 ~~H~~lG~~~~~l~~~Q~l-~~~-~rp~------~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~--~~~~~~- 344 (400)
..|..+|+..-++..+-.+ ..+ +|.| .+.+.+.+=..+-++...++.++|.+.++..++.... +...++
T Consensus 44 g~rg~vGI~fav~f~i~lvltLvnL~KHG~~~lp~eKRf~~iGRRwqWyW~~fv~a~~~iS~f~~IDVDR~yl~~~piil 123 (296)
T PF10361_consen 44 GTRGSVGIAFAVLFAIALVLTLVNLRKHGRLYLPLEKRFYPIGRRWQWYWMLFVCACGLISLFMSIDVDRYYLQGLPIIL 123 (296)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhcccccchhHHHHHHHHHHHHHHHhhheeeeecHHhcccccHHH
Confidence 6899999988777665543 222 2221 1112233334566678889999999999999887521 222233
Q ss_pred -HHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCCccccccCCCCC
Q 015780 345 -AYIGILIFLGAVAALLEAIT-WVIVLKRKNGNSVKHHHSINGANGA 389 (400)
Q Consensus 345 -~~~~~~~~~~~~~i~lei~~-w~~~~~~~~~~~~~~~~~~~~~~~~ 389 (400)
.+--++...+.++++-|..+ |-.+..|+--. +|+++ ....|-+
T Consensus 124 ~sfF~~l~~~~~lA~vWE~VRhWGSw~ERQ~id-~dpf~-~~~d~~R 168 (296)
T PF10361_consen 124 QSFFWYLMQPGTLAAVWEAVRHWGSWQERQFID-PDPFA-LRQDDRR 168 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhchhhhcccc-CCccc-cCcccce
Confidence 33344566666777778655 87776555444 77763 3344443
No 48
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=80.53 E-value=20 Score=31.62 Aligned_cols=92 Identities=21% Similarity=0.128 Sum_probs=50.2
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhhcccCCCC-CC--cccccchhHHHHHHHHHHHhhe---------------------ee
Q 015780 243 YLHVACQASGYIVGVAGWGTGIKLGNDSPG-IK--YNKHRNIGIALFAIGTLQMFAM---------------------LL 298 (400)
Q Consensus 243 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~-~~--~~~H~~lG~~~~~l~~~Q~l~~---------------------~~ 298 (400)
..|+..-+.-+++.+.|+.+-........+ .. ...|.++|++++++.++=.+-. ..
T Consensus 8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (182)
T PF01292_consen 8 ILHWLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFLL 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHh
Confidence 367776665556666665543322211111 11 4679999998888776655433 12
Q ss_pred ccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHccccc
Q 015780 299 RPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 299 rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
+.+.+ .....+..-+..-.+.+++..+.+.+|+-++
T Consensus 88 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~ 123 (182)
T PF01292_consen 88 RGKPP--PAGKYNPGQKIVHWVLYLLLLLLPITGLLLW 123 (182)
T ss_pred cCCCC--CCCcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1122344444566667777777777887764
No 49
>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.
Probab=79.05 E-value=33 Score=31.33 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=25.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHccccc
Q 015780 309 YWNIYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 309 ~~~~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
.+|...+..-.++++++.+.+.+|+.++
T Consensus 103 kyN~~Qk~~y~~i~~~~~~~~~TGl~m~ 130 (204)
T TIGR01583 103 KYNAGQKSWYWILVLGGFLMIITGIFMW 130 (204)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999988999999999999999986
No 50
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=78.14 E-value=2.9 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=23.1
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 307 RLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 307 r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
|+.+..+|+|+|.++-++-.+-++.|..+
T Consensus 1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 1 RRILRKLHRWLGLILGLLLFVIFLTGAVM 29 (37)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45677899999999888888888887644
No 51
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=77.96 E-value=2.7 Score=35.78 Aligned_cols=11 Identities=9% Similarity=-0.013 Sum_probs=5.5
Q ss_pred HHHHHHHHhcC
Q 015780 363 ITWVIVLKRKN 373 (400)
Q Consensus 363 ~~w~~~~~~~~ 373 (400)
..|...|||||
T Consensus 19 ~~~~~rRR~r~ 29 (130)
T PF12273_consen 19 FYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHhhc
Confidence 34555555554
No 52
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=77.55 E-value=16 Score=31.29 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=21.0
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHcc
Q 015780 306 YRLYWNIYHWSLGYSVIVLSIINIFEGF 333 (400)
Q Consensus 306 ~r~~~~~~H~~~G~~~~~lg~~ni~~Gl 333 (400)
.++++..+..+.||.++.+=+..+.++.
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~ 84 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQ 84 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhh
Confidence 6788899999999988876555555554
No 53
>PF13630 SdpI: SdpI/YhfL protein family
Probab=77.20 E-value=2.4 Score=32.10 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=28.3
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 305 KYRLYWNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 305 ~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
+....|+..|+..|...++.|++.+..++....
T Consensus 18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~ 50 (76)
T PF13630_consen 18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILF 50 (76)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999999887654
No 54
>PRK11513 cytochrome b561; Provisional
Probab=76.43 E-value=6.6 Score=35.26 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.4
Q ss_pred cccccchhHHHHHHHHHHHhheee
Q 015780 275 YNKHRNIGIALFAIGTLQMFAMLL 298 (400)
Q Consensus 275 ~~~H~~lG~~~~~l~~~Q~l~~~~ 298 (400)
+..|..+|+++++++++-.+-.+.
T Consensus 42 ~~~H~s~G~~vl~L~v~Rl~~r~~ 65 (176)
T PRK11513 42 NMIHVSCGISILVLMVVRLLLRLK 65 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999876554
No 55
>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently. This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane
Probab=74.81 E-value=27 Score=30.70 Aligned_cols=124 Identities=19% Similarity=0.105 Sum_probs=60.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcch--hhhhHhHHHHHHHHHHHHHhhh------------------h-
Q 015780 206 RNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAW--FYLHVACQASGYIVGVAGWGTG------------------I- 264 (400)
Q Consensus 206 ~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~W--f~~H~~~q~~~~~~~i~g~~l~------------------~- 264 (400)
+..| +++++++.+++..|..+..-.+... ....+ +.+|..+..+-..+.+.-+... +
T Consensus 7 r~~H-W~~a~~~i~l~~tG~~~~~~~~~~~-~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
T PF01292_consen 7 RILH-WLNALSFIALIATGLWIHFPPPGLY-FGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY 84 (182)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhccccccc-ccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 3445 4567777777778876533222111 11112 5678886554333333222222 0
Q ss_pred -hcccCCC--CCCcccccchhHHHHHHHHHHHhheeec-c---C------CCCCCcccchhhhHHHHHHHHHHHHHHHHH
Q 015780 265 -KLGNDSP--GIKYNKHRNIGIALFAIGTLQMFAMLLR-P---K------PDHKYRLYWNIYHWSLGYSVIVLSIINIFE 331 (400)
Q Consensus 265 -~~~~~~~--~~~~~~H~~lG~~~~~l~~~Q~l~~~~r-p---~------~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~ 331 (400)
....+.+ +..+..-+....++++++.++++.|+.. . . ...........+|.+.+..+++.-++=++.
T Consensus 85 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~~ 164 (182)
T PF01292_consen 85 FLLRGKPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVYA 164 (182)
T ss_pred HHhcCCCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 1112223334666667777887766532 1 0 012234567777877777776554444443
No 56
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=73.63 E-value=35 Score=31.03 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=21.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 310 WNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 310 ~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
.|..-++.-.+++++..+.+.+|+.++.
T Consensus 112 ~n~~~k~~~~~l~~~~~~~~lTG~~~~~ 139 (211)
T TIGR02125 112 YNPLQFVAYFGFIVLILFMILTGLALYY 139 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3666777777888889999999987753
No 57
>PRK10179 formate dehydrogenase-N subunit gamma; Provisional
Probab=72.34 E-value=31 Score=32.02 Aligned_cols=29 Identities=14% Similarity=0.146 Sum_probs=25.6
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHccccc
Q 015780 308 LYWNIYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 308 ~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
..+|...+..-..+++++++.+.+|+-++
T Consensus 107 gk~N~~QKl~y~~i~~~~~~~i~TGl~l~ 135 (217)
T PRK10179 107 GKYNAGQKMMFWSIMSMIFVLLVTGVIIW 135 (217)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999886
No 58
>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana. This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane
Probab=71.48 E-value=13 Score=30.34 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHhheeeccC-----CCCCCcccchhhhHHHHHHHHHHHHHHHH
Q 015780 281 IGIALFAIGTLQMFAMLLRPK-----PDHKYRLYWNIYHWSLGYSVIVLSIINIF 330 (400)
Q Consensus 281 lG~~~~~l~~~Q~l~~~~rp~-----~~~~~r~~~~~~H~~~G~~~~~lg~~ni~ 330 (400)
+|.+.++++.++.+.+ .|+. ..-+..+ ...+|+++|+.+++++.+=..
T Consensus 1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~-~~~~Hr~lg~~~~~~~~~H~~ 53 (125)
T PF01794_consen 1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDR-LLRFHRWLGRLAFFLALLHGV 53 (125)
T ss_pred CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3666677777776544 3332 1112222 445999999999998877653
No 59
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=69.54 E-value=37 Score=36.88 Aligned_cols=48 Identities=27% Similarity=0.370 Sum_probs=25.2
Q ss_pred HHHHHHHHhhee-eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcc
Q 015780 286 FAIGTLQMFAML-LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGF 333 (400)
Q Consensus 286 ~~l~~~Q~l~~~-~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl 333 (400)
+++.++|++.|. +.-...-+.+.+..-+-..+|+.++++|.+-..++.
T Consensus 450 l~iGvi~i~~g~~l~~~~~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~ 498 (646)
T PRK05771 450 LLIGVIHLFLGLLLGFINNVRKGDYKDAFLAQLGWLLILLGILLIVLGG 498 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677765443 211111112233333444578888888887777665
No 60
>PRK12405 electron transport complex RsxE subunit; Provisional
Probab=69.23 E-value=70 Score=30.13 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHH
Q 015780 208 THGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFA 287 (400)
Q Consensus 208 ~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~ 287 (400)
..++-|.+|..+.+-....+....|++ -+.+ +++..+++.++.++....+.-+ .+....|+.+|+.+=.
T Consensus 36 ~nalgmGlA~~~Vl~~S~~~~sllr~~---i~~~------lRi~v~IlvIA~~V~~v~~~L~--a~~p~l~~~LGiflpL 104 (231)
T PRK12405 36 TNALGLGLATTLVLVCSNLTVSLLRKW---IPKE------IRIPIFVMIIASFVTVVQLLMN--AYAYGLYQSLGIFIPL 104 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHH------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhH
Confidence 347788888887777776666666653 1222 5556666666665555443211 1223567777766544
No 61
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=68.97 E-value=43 Score=30.29 Aligned_cols=56 Identities=21% Similarity=0.114 Sum_probs=32.1
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhhcccCC-CCCCcccccchhHHHHHHHHHHHhheee
Q 015780 243 YLHVACQASGYIVGVAGWGTGIKLGNDS-PGIKYNKHRNIGIALFAIGTLQMFAMLL 298 (400)
Q Consensus 243 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~-~~~~~~~H~~lG~~~~~l~~~Q~l~~~~ 298 (400)
.+||.+-++-+...+.|......-..+. ....+..|..+|+.+++|+++-.+--+.
T Consensus 14 ~lHWl~allv~~~~~~g~~~~~~~~~~~~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~ 70 (181)
T COG3038 14 ALHWLMALLVIGAFALGELMGFLPRGPGLYFLLYELHKSIGILVLALMVLRLLWRLR 70 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5677654433333333333332222211 1112589999999999999988775554
No 62
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=68.71 E-value=11 Score=29.70 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=26.9
Q ss_pred ccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 299 RPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 299 rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
|+++..+.|+ +..+|+.+|....+.-.+-+.+|+.+
T Consensus 50 r~~~~~~~r~-~~dlH~~~G~~~~~~ll~~a~TG~~~ 85 (88)
T PF13703_consen 50 RPKRSKSKRR-WFDLHRVLGLWFLPFLLVIALTGLFF 85 (88)
T ss_pred ccCCCCccCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555 77799999999999988888888754
No 63
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=61.42 E-value=33 Score=28.64 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=35.0
Q ss_pred ccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHccc
Q 015780 276 NKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFD 334 (400)
Q Consensus 276 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~ 334 (400)
-.|-++|.++.++.++-++.++.+|.++. +..|.+++..+++..+..+.+-..
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p------~p~~iffavcI~l~~~s~~lLI~W 81 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPP------KPLHIFFAVCILLICISAILLIFW 81 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCC------CceEEehHHHHHHHHHHHHhheee
Confidence 46777888888777777777777665432 235667777777766666665543
No 64
>PRK10639 formate dehydrogenase-O subunit gamma; Provisional
Probab=60.78 E-value=95 Score=28.55 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=23.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHccccc
Q 015780 309 YWNIYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 309 ~~~~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
.+|...+..-..+++++++.+.+|+-+.
T Consensus 106 kyN~~qk~~y~~~~~~~~~~~iTGl~l~ 133 (211)
T PRK10639 106 RYNFGQKCVFWAAIIFLVLLLVSGVIIW 133 (211)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888889999998875
No 65
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=60.27 E-value=15 Score=30.35 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015780 348 GILIFLGAVAALLEAITWVIVLKRKNGN 375 (400)
Q Consensus 348 ~~~~~~~~~~i~lei~~w~~~~~~~~~~ 375 (400)
++++++.++.++.-++.|++.+||++..
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k~~ 32 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKKAG 32 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4455555666778888999998777653
No 66
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=59.35 E-value=8.4 Score=32.53 Aligned_cols=66 Identities=14% Similarity=0.358 Sum_probs=35.9
Q ss_pred ccchhhh--HHHHHHHHHHHHHHHHHcccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015780 308 LYWNIYH--WSLGYSVIVLSIINIFEGFDILDPEKKWKRAYIGILIFLGAVAALLEAITWVIVLKRKNG 374 (400)
Q Consensus 308 ~~~~~~H--~~~G~~~~~lg~~ni~~Gl~l~~~~~~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~~~ 374 (400)
.-|.++| .-+|-++++.|++--.+......... -+-.+...+..++++.++...+-|+..+|||++
T Consensus 44 ~e~s~Yrci~pfG~vili~GvvvT~vays~n~~~s-i~~~~G~vlLs~GLmlL~~~alcW~~~~rkK~~ 111 (129)
T PF15099_consen 44 AEWSCYRCIMPFGVVILIAGVVVTAVAYSFNSHGS-IISIFGPVLLSLGLMLLACSALCWKPIIRKKKK 111 (129)
T ss_pred CCceEEEEEEEehHHHHHHhhHhheeeEeecCCcc-hhhhehHHHHHHHHHHHHhhhheehhhhHhHHH
Confidence 3455555 34788888888775555544422222 122334444445555555555678766555543
No 67
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=58.36 E-value=56 Score=34.30 Aligned_cols=32 Identities=9% Similarity=-0.169 Sum_probs=12.0
Q ss_pred eccCCCCCCcccchhhhHHHHHHHHHHHHHHH
Q 015780 298 LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINI 329 (400)
Q Consensus 298 ~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni 329 (400)
+|.+++...|++.-+...+.+..+-+++++-+
T Consensus 385 lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~ 416 (507)
T TIGR00910 385 LILKHPDLKRTFNIPGGIGGKLIIAGIGFLLS 416 (507)
T ss_pred HHHhcCCCCCCeEecCCccchhhHHHHHHHHH
Confidence 34444333344333333333333333333333
No 68
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.40 E-value=1.1e+02 Score=29.96 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=37.3
Q ss_pred chhHHHHHH-HHHHHhh---ee--eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccCC
Q 015780 280 NIGIALFAI-GTLQMFA---ML--LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDP 338 (400)
Q Consensus 280 ~lG~~~~~l-~~~Q~l~---~~--~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~ 338 (400)
-+|++++.| .+.|.+- .+ +--.+..|.++.|+-.-...-..++++++.+++.|+.-.++
T Consensus 217 rlgLvLl~LhYftellfHi~rlfyf~dek~~k~fslwa~vF~l~Rl~tliiaVlt~gfgla~~en 281 (374)
T KOG1608|consen 217 RLGLVLLTLHYFTELLFHIARLFYFSDEKYQKLFSLWAAVFVLGRLGTLIIAVLTVGFGLAGAEN 281 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 477777765 3444431 11 22223445677777666555567888999999999976644
No 69
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=55.65 E-value=43 Score=27.51 Aligned_cols=31 Identities=23% Similarity=0.064 Sum_probs=25.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHcccccCC
Q 015780 308 LYWNIYHWSLGYSVIVLSIINIFEGFDILDP 338 (400)
Q Consensus 308 ~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~ 338 (400)
+..|..|++.-+.+.+..++.+..+..+...
T Consensus 25 ~~vn~~h~~~e~~i~i~~ii~~~~~~~~~~~ 55 (110)
T PF13789_consen 25 KHVNKLHKKGEWIIFIIFIILIFIFLFIFIF 55 (110)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 5688999999999999999998777665443
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.89 E-value=19 Score=30.45 Aligned_cols=17 Identities=18% Similarity=0.172 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 015780 344 RAYIGILIFLGAVAALL 360 (400)
Q Consensus 344 ~~~~~~~~~~~~~~i~l 360 (400)
++.|++.++.+++.++|
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 34443333333333333
No 71
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=50.92 E-value=2e+02 Score=26.43 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=42.9
Q ss_pred chhhhhHhHHHHHHHHHHHHHhhhh--hcccC-C---CCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhh
Q 015780 240 AWFYLHVACQASGYIVGVAGWGTGI--KLGND-S---PGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIY 313 (400)
Q Consensus 240 ~Wf~~H~~~q~~~~~~~i~g~~l~~--~~~~~-~---~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~ 313 (400)
...+.|+.+-+.++..++.=+..-. ....+ + +.....+=-++|.+.+++++.=.+...-+-.++-+ ..|+.+
T Consensus 72 ~l~~~RR~LGl~af~~a~lH~~~y~~~~~~~~~~~~~~~i~~~~~i~~G~ia~~lLl~LaiTS~~~~~rrLg--~~Wk~L 149 (205)
T PRK05419 72 LLIRTRRLLGLWAFFYATLHLLSYLLLDLGLDWSLLGKEIVKRPYITVGMAAFLILLPLALTSTRASQRRLG--KRWQKL 149 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHH
Confidence 3467888887777666555332111 11100 0 00011222244665555443333322211111111 259999
Q ss_pred hHHHHHHHHHHHHHHHHHcc
Q 015780 314 HWSLGYSVIVLSIINIFEGF 333 (400)
Q Consensus 314 H~~~G~~~~~lg~~ni~~Gl 333 (400)
|+. .|.+++++.+=.+...
T Consensus 150 H~l-~Y~a~~L~~~H~~~~~ 168 (205)
T PRK05419 150 HRL-VYLIAILAPLHYLWSV 168 (205)
T ss_pred HHH-HHHHHHHHHHHHHHHh
Confidence 998 5666667777765544
No 72
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=49.44 E-value=50 Score=26.91 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=34.2
Q ss_pred cchhhcchhHHHHHHHHHHH--HHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhh
Q 015780 203 RRRRNTHGVLNAVSWGVLIP--MGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIK 265 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P--~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 265 (400)
......=|.+-.++|-+..| +|+++.|++-......+.| .+++.++|+++|+.
T Consensus 36 ~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~----------tl~~lllGv~~G~~ 90 (100)
T TIGR02230 36 RSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSW----------TLTMLIVGVVIGCL 90 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHH----------HHHHHHHHHHHHHH
Confidence 35666778888999999988 5678888875432122322 34556666666655
No 73
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=46.98 E-value=28 Score=21.27 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=13.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccc
Q 015780 311 NIYHWSLGYSVIVLSIINIFEGFD 334 (400)
Q Consensus 311 ~~~H~~~G~~~~~lg~~ni~~Gl~ 334 (400)
+.+|+|++-+.-++-++-..+|+.
T Consensus 2 ~~LH~w~~~i~al~~lv~~iTGl~ 25 (27)
T PF03929_consen 2 NDLHKWFGDIFALFMLVFAITGLI 25 (27)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456776666655555555555543
No 74
>cd01663 Cyt_c_Oxidase_I Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believ
Probab=46.10 E-value=2.6e+02 Score=29.35 Aligned_cols=60 Identities=8% Similarity=-0.049 Sum_probs=35.1
Q ss_pred cchhhcchhHHHHHHHHH-HHHHH---HHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhh
Q 015780 203 RRRRNTHGVLNAVSWGVL-IPMGA---MIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGT 262 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il-~P~gi---l~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l 262 (400)
.+.+..||.+|...|..- +..|. ++.|..+.-.-.-|++=.++..+..++.++.+.++..
T Consensus 46 ~~~~t~Hg~~mif~~~~p~~~~g~~~~lvP~~~g~~dl~~prln~~s~wl~~~g~~l~~~s~~~ 109 (488)
T cd01663 46 NVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPRLNNLSFWLLPPSLLLLLLSALV 109 (488)
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999873 22332 3344443110112232345666777777777777655
No 75
>PRK10263 DNA translocase FtsK; Provisional
Probab=43.79 E-value=2.2e+02 Score=33.75 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=17.8
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchh
Q 015780 206 RNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWF 242 (400)
Q Consensus 206 ~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf 242 (400)
...|..|.-+.+++|+-+++++.--+=.|-..++.|.
T Consensus 16 ~~~~rrL~E~~gIlLlllAlfL~lALiSYsPsDPSwS 52 (1355)
T PRK10263 16 LSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWS 52 (1355)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhCCccCCccc
Confidence 3444555555556666666554433333322345553
No 76
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=43.76 E-value=2.1e+02 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHcccc
Q 015780 312 IYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 312 ~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
..|..+..++..+...++..|+..
T Consensus 79 ~~Hi~LA~~~~pL~l~tl~~a~~~ 102 (133)
T PF04238_consen 79 ISHIILAIVALPLVLYTLYRALRG 102 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357777777777777777777765
No 77
>PRK03735 cytochrome b6; Provisional
Probab=43.52 E-value=1.2e+02 Score=28.32 Aligned_cols=107 Identities=13% Similarity=0.095 Sum_probs=67.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCC-CcccccchhH
Q 015780 205 RRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGI-KYNKHRNIGI 283 (400)
Q Consensus 205 ~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~-~~~~H~~lG~ 283 (400)
....=|.+..+++.+..-.|++++-|+.+.. ...|-.+ .. ...+-..|+ -.+.|.+-.-
T Consensus 40 ~~~~~G~l~~~~~~iqi~TGi~L~~~Y~P~~--~~A~~Sv----------~~--------I~~ev~~GwliR~~H~~gas 99 (223)
T PRK03735 40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDI--KNAYESV----------YY--------LQNEVAFGWIVRGMHHWGAS 99 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hhHHHHH----------HH--------HHcccccHHHHHHHHhhhhH
Confidence 4455699999999999999999998876531 1111111 00 011111122 2468888888
Q ss_pred HHHHHHHHHHhheeec-cCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 284 ALFAIGTLQMFAMLLR-PKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 284 ~~~~l~~~Q~l~~~~r-p~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
+.++++.++.+-+++. ..|+ + | ..-++.|.+++++.+...++|..+..
T Consensus 100 ~~~~~~~lH~~r~~~~gsYk~-p-r----e~~W~~Gv~l~~l~~~~af~GY~Lpw 148 (223)
T PRK03735 100 LVIVMMFLHTLRVFFTGGYKK-P-R----ELNWVVGVLIFFVTVGLGFTGYLLPW 148 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-C-C----CceeHHHHHHHHHHHHHHhccccCCc
Confidence 8888888888765542 1121 1 1 12358899999999999999987753
No 78
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.21 E-value=85 Score=26.07 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHcccc
Q 015780 318 GYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 318 G~~~~~lg~~ni~~Gl~l 335 (400)
+.++.+-..+...+|+.+
T Consensus 24 ~~~~~~~~~~gl~~g~~l 41 (111)
T TIGR03750 24 GVAAGVGLAAGLVLGLLL 41 (111)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444445555543
No 79
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=42.73 E-value=1.2e+02 Score=29.39 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=34.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHcccccC------CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015780 312 IYHWSLGYSVIVLSIINIFEGFDILD------PEKKWKRAYIGILIFLGAVAALLEAITWVIVL 369 (400)
Q Consensus 312 ~~H~~~G~~~~~lg~~ni~~Gl~l~~------~~~~~~~~~~~~~~~~~~~~i~lei~~w~~~~ 369 (400)
++=..++.++++++..|..+=++..+ .|+. .-.|.++-..+.++.+.+|+++-....
T Consensus 209 plgI~~slv~v~iAa~sLllDFd~Ie~~v~~gaPk~-~eW~~AfGL~vTLVWLYlEILRLL~~l 271 (274)
T PF12811_consen 209 PLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGAPKK-MEWYAAFGLLVTLVWLYLEILRLLSKL 271 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777776666543 2332 223444445556678899998865443
No 80
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=42.56 E-value=4.4e+02 Score=27.97 Aligned_cols=156 Identities=13% Similarity=-0.005 Sum_probs=80.9
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC-CCCcccccchhHHH
Q 015780 207 NTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP-GIKYNKHRNIGIAL 285 (400)
Q Consensus 207 ~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~lG~~~ 285 (400)
..|=++-.+.-++-+=++++=.||.|. +++.|.++=+...-+-.+...+|++.|+.+.-+-+ .+. ..-..+|=+.
T Consensus 17 ~fH~lFvpltiGL~~llai~E~~~~rt---g~~~y~~larFW~Klf~InFavGVvTGivmeFqFG~nWs-~ys~~vGdif 92 (522)
T PRK15097 17 MYHFLFVPLTLGMAFLLAIMETVYVLS---GKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWS-YYSHYVGDIF 92 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhhcchheeecccccH-HHHHHHHHHH
Confidence 456666665555555566677787775 57888777766665555555667777776542211 121 2233333333
Q ss_pred HH--------HHHHHH-hhee-eccCCCCCCcccchhhhHHHHHHHHHHHHHH------------HHHcccccC-C----
Q 015780 286 FA--------IGTLQM-FAML-LRPKPDHKYRLYWNIYHWSLGYSVIVLSIIN------------IFEGFDILD-P---- 338 (400)
Q Consensus 286 ~~--------l~~~Q~-l~~~-~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~n------------i~~Gl~l~~-~---- 338 (400)
-. ..+++. +.|+ +.-. ++.-++.|....+.+.+-+.+. -..|.++.. .
T Consensus 93 G~pLa~E~l~AFFlEstFlGl~~FGW-----~rl~~~~H~~~~~lVaiGt~lSA~wIl~ANsWMQtP~G~~~~~~~gr~~ 167 (522)
T PRK15097 93 GAPLAIEGLMAFFLESTFVGLFFFGW-----DRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRME 167 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhh-----hhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEecCCCeEE
Confidence 33 333442 2232 2211 2233567877666544433332 234533310 0
Q ss_pred ----------C-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015780 339 ----------E-KKWKRAYIGILIFLGAVAALLEAITWVIVLKR 371 (400)
Q Consensus 339 ----------~-~~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~ 371 (400)
| ..+...-.+..+.+....+++-+..|+..|+|
T Consensus 168 ~~d~~a~~~NP~~~~~f~H~~~aa~~tg~f~v~gvsA~~llr~r 211 (522)
T PRK15097 168 MVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGR 211 (522)
T ss_pred eCCHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 11222444555666666788888888887654
No 81
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=42.43 E-value=55 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=18.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q 015780 341 KWKRAYIGILIFLGAVAALLEAITWVIVLKRKNGNSVKHHH 381 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~~~~~~~~~~ 381 (400)
...+.|+.++..+++++++--++.+.+.+|+. .+.|+|+
T Consensus 41 ~~~~lYIL~vmgfFgff~~gImlsyvRSKK~E--~s~DPyh 79 (129)
T PF02060_consen 41 DNEYLYILVVMGFFGFFTVGIMLSYVRSKKRE--HSHDPYH 79 (129)
T ss_dssp SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH-------TTT
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHHHHhhhc--cccChHH
Confidence 34567776666666555544455555554433 3346654
No 82
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=41.51 E-value=78 Score=30.74 Aligned_cols=43 Identities=28% Similarity=0.460 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHcccccC-CCCcchhHHHHHHHHHHHHHH
Q 015780 316 SLGYSVIVLSIINIFEGFDILD-PEKKWKRAYIGILIFLGAVAA 358 (400)
Q Consensus 316 ~~G~~~~~lg~~ni~~Gl~l~~-~~~~~~~~~~~~~~~~~~~~i 358 (400)
.+-.+.+.+.+++.+.|+...+ +...|..+|.+++++++++.+
T Consensus 263 vvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~ 306 (318)
T TIGR00383 263 VVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIAL 306 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHH
Confidence 3444555566777778887653 345677777766665555443
No 83
>COG4244 Predicted membrane protein [Function unknown]
Probab=40.98 E-value=1.7e+02 Score=25.94 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=26.7
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhh
Q 015780 207 NTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIK 265 (400)
Q Consensus 207 ~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 265 (400)
..|=-+-++...+.+.+.-..- ++..|+..=+.....+.+.+...++.++.
T Consensus 21 lVhFpI~l~v~ali~D~~~~~~--------~~~~~~~vs~wn~~~a~i~~~~A~~~g~~ 71 (160)
T COG4244 21 LVHFPIGLFVAALIFDLVGFLT--------GKDRWFDVSWWNLFAALIAGFFAVIAGLF 71 (160)
T ss_pred ccchHHHHHHHHHHHHHHHHhh--------hhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555444332 23446666666666666666655555544
No 84
>PTZ00127 cytochrome c oxidase assembly protein; Provisional
Probab=40.40 E-value=2.1e+02 Score=29.26 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=36.4
Q ss_pred ccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 276 NKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 276 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
..|-.+|++++.+.+...+....+..+....++.. .--+.+.+++.++..+++.+|-...+
T Consensus 219 a~Hll~al~i~~~l~~~~~~l~~~~~~~~~~~~~~-~~lr~l~~~~~~l~~lqI~lGa~Vag 279 (403)
T PTZ00127 219 AAHLFNAFVIYSLLLWNGLTLILFALPSIAPFPEL-LKMRLLARGLFALVFLTAMSGAFVAG 279 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 68999999999988877654332211111111111 11245667777777888888865543
No 85
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.26 E-value=3.6e+02 Score=27.08 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=40.2
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhh
Q 015780 207 NTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGI 264 (400)
Q Consensus 207 ~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~ 264 (400)
.-+..++-+||=+++=+|+..+.+.+.. +.++..|..+..++.+..+.++....
T Consensus 186 ~~~w~FNP~aWQllFv~G~~~g~~~~~~----~~~~~~~~~l~~la~~~~l~~~~~~~ 239 (358)
T PF10129_consen 186 GGGWFFNPFAWQLLFVLGLWLGWGWRRG----RRFLPRRRWLVWLAVAYVLFAFFWRL 239 (358)
T ss_pred ccccccChHHHHHHHHHHHHHhcccccc----ccccccchHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999998875542 23557788888887777666655543
No 86
>COG2717 Predicted membrane protein [Function unknown]
Probab=39.80 E-value=50 Score=30.60 Aligned_cols=44 Identities=14% Similarity=0.245 Sum_probs=34.0
Q ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhH
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVAC 248 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~ 248 (400)
+.....-..+-++||.+++|+++-.-+..+.- .++.|.++|+..
T Consensus 110 d~~~rpyitiG~iaflll~pLalTS~k~~~rr--lG~rW~~LHrLv 153 (209)
T COG2717 110 DLLKRPYITIGMIAFLLLIPLALTSFKWVRRR--LGKRWKKLHRLV 153 (209)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHH
Confidence 34455567788999999999999998876642 247899999874
No 87
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=39.67 E-value=64 Score=29.19 Aligned_cols=60 Identities=22% Similarity=0.098 Sum_probs=41.4
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCC
Q 015780 241 WFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKP 302 (400)
Q Consensus 241 Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~ 302 (400)
|++.-..+-..+.++.++.+++|+...+-. ..+..-+++|.+++.+.++|+...++.|-|
T Consensus 79 ~~~aaAAmL~~g~~i~~I~filgl~~~cv~--~~~~fyRvi~~~l~laaV~qi~sLvIyPVk 138 (201)
T KOG4671|consen 79 GGRAAAAMLFIGAAILVICFILGLFALCVP--LKLVFYRVIGGLLFLAAVLQIISLVIYPVK 138 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ceEEeeeHHHHHHHHHHHHHhheeEEeeee
Confidence 445555555556677777788887755422 234677899999999999998777766654
No 88
>COG4329 Predicted membrane protein [Function unknown]
Probab=39.40 E-value=50 Score=28.24 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=9.3
Q ss_pred hcchhHHHHHHHHHHH
Q 015780 207 NTHGVLNAVSWGVLIP 222 (400)
Q Consensus 207 ~~Hg~lm~~aw~il~P 222 (400)
.+-|++..++-+-++.
T Consensus 13 ~~aGIllGLGLggFfD 28 (160)
T COG4329 13 LWAGILLGLGLGGFFD 28 (160)
T ss_pred hHHHHHHhcchhhhhh
Confidence 4556666666555554
No 89
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=39.08 E-value=4.3e+02 Score=28.05 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=80.2
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCC-CCCcccccchhHHH
Q 015780 207 NTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSP-GIKYNKHRNIGIAL 285 (400)
Q Consensus 207 ~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~-~~~~~~H~~lG~~~ 285 (400)
..|-++-.+.-++-+=++++=.+|.|. +++.|.++=+...=+-.+...+|++.|+.+.-+-+ .+. ..-..+|=+.
T Consensus 17 ~fH~lFvpltiGL~~~lai~E~~~~rt---g~~~y~~larFw~Klf~InFavGVvTGivmeFqFG~nWs-~ys~~vGdvf 92 (514)
T PRK15035 17 LYHFLFVPLTLGLIFLLAIMETIYVVT---GKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWS-FYSNYVGDIF 92 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcchH-HHHHHHHHHh
Confidence 567666666666666677777788776 57777666655554444444556666666532211 121 2233334333
Q ss_pred HHH--------HHHHH-hhee-eccCCCCCCcccchhhhHHHHHHHHHHHHH------------HHHHccccc--C----
Q 015780 286 FAI--------GTLQM-FAML-LRPKPDHKYRLYWNIYHWSLGYSVIVLSII------------NIFEGFDIL--D---- 337 (400)
Q Consensus 286 ~~l--------~~~Q~-l~~~-~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~------------ni~~Gl~l~--~---- 337 (400)
-.. .+++. +.|+ +.-. ++.-++.|....+.+.+-+.. |-..|.++. +
T Consensus 93 G~pLa~E~l~AFFlEstFlGl~lFGw-----~rl~~~~H~~~~~lVaiGt~lSA~wIl~ANsWMQtP~G~~~~~~~gr~~ 167 (514)
T PRK15035 93 GAPLAMEALMAFFLESTFVGLFFFGW-----QRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRME 167 (514)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCeeEEecCCCeEE
Confidence 333 33442 2332 2211 223356776655544433222 223353331 1
Q ss_pred ----------CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015780 338 ----------PEKKWKRAYIGILIFLGAVAALLEAITWVIVLKR 371 (400)
Q Consensus 338 ----------~~~~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~ 371 (400)
+.-.+...-++..+.+....+++-+..|+..|+|
T Consensus 168 ~~d~~avi~NP~~~~~f~H~~~aa~~tg~~~v~gvsA~~lLr~r 211 (514)
T PRK15035 168 MTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGR 211 (514)
T ss_pred eCcHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0111233455566667777888889999888654
No 90
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=38.26 E-value=1.1e+02 Score=24.17 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=22.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHccccc
Q 015780 309 YWNIYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 309 ~~~~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
--+.+=+..|+..++.|++-+..++...
T Consensus 38 D~~~l~r~~g~~~~~~~i~~li~~l~~~ 65 (97)
T PF12650_consen 38 DKKKLCRFMGKFMLIIGIILLIGGLLSF 65 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999888433
No 91
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=38.23 E-value=98 Score=26.08 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHcccc
Q 015780 317 LGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 317 ~G~~~~~lg~~ni~~Gl~l 335 (400)
++.++.+-..+.+.+|+.+
T Consensus 26 l~~~a~~~~~~g~~~gl~l 44 (121)
T PF11990_consen 26 LGLAAGVGFVAGLVVGLPL 44 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555455555555544
No 92
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=38.18 E-value=63 Score=31.78 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHcccccC-CCCcchhHHHHHHHHHHHHHHH
Q 015780 316 SLGYSVIVLSIINIFEGFDILD-PEKKWKRAYIGILIFLGAVAAL 359 (400)
Q Consensus 316 ~~G~~~~~lg~~ni~~Gl~l~~-~~~~~~~~~~~~~~~~~~~~i~ 359 (400)
.+..+.+...+++.+.|+.... +...|..+|..+++++++++++
T Consensus 267 i~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~ 311 (322)
T COG0598 267 IVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALL 311 (322)
T ss_pred HHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHH
Confidence 3444555556666667777665 4466777776666655554443
No 93
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.74 E-value=87 Score=30.72 Aligned_cols=41 Identities=10% Similarity=0.228 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHcccccC-CCCcchhHHHHHHHHHHHH
Q 015780 316 SLGYSVIVLSIINIFEGFDILD-PEKKWKRAYIGILIFLGAV 356 (400)
Q Consensus 316 ~~G~~~~~lg~~ni~~Gl~l~~-~~~~~~~~~~~~~~~~~~~ 356 (400)
++..+.+.+.+++.+.|+...+ +...|..+|.+++++++++
T Consensus 269 ilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i 310 (324)
T PRK09546 269 LMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVL 310 (324)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHH
Confidence 4445566778888889988754 3455777776555544443
No 94
>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]
Probab=37.63 E-value=16 Score=37.32 Aligned_cols=113 Identities=17% Similarity=0.150 Sum_probs=70.0
Q ss_pred ccchhhcchhHHHHHHH--HHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCC----c
Q 015780 202 RRRRRNTHGVLNAVSWG--VLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIK----Y 275 (400)
Q Consensus 202 ~~~~~~~Hg~lm~~aw~--il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~----~ 275 (400)
......+|..++...+. ++-|++.+ +|=.|.- +.++.|=+.|...--...++.++-...++.+.+....+. -
T Consensus 277 ~~~~~~~h~~~G~~~~~l~~lQ~~~~l-~Rp~~~~-k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~ 354 (403)
T KOG4293|consen 277 DGTVYSAHTDLGIILLVLAFLQPLALL-LRPLPES-KIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYG 354 (403)
T ss_pred CceeeeecccchhHHHHHHHHHHHHHH-hcCCccc-CceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeee
Confidence 34567888888888887 55555544 3422211 234566667877654455555555444444433222221 3
Q ss_pred ccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHH
Q 015780 276 NKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWS 316 (400)
Q Consensus 276 ~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~ 316 (400)
..|..+|.+..++-.+|.....-|+++....|...+..|+-
T Consensus 355 ~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (403)
T KOG4293|consen 355 SILAVLGLIAVILEILSWRITIERPSPSSMSRTSTNAPSRG 395 (403)
T ss_pred eEEEEechhhhhhhhheeeeeecccCcccccccccCccccc
Confidence 68999999999988888777777777766666666666653
No 95
>CHL00070 petB cytochrome b6
Probab=37.50 E-value=1.8e+02 Score=27.02 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=65.3
Q ss_pred chhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCC-Ccccccchh
Q 015780 204 RRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGI-KYNKHRNIG 282 (400)
Q Consensus 204 ~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~-~~~~H~~lG 282 (400)
+....=|.+..+++.+..-.|++++=|+.+.. ...|-- +.. ...+-.-|+ -.+.|.+-.
T Consensus 31 ~~~~~~G~ll~~~~~iqiiTGi~L~~~Y~p~~--~~Af~S----------v~~--------I~~ev~~Gwl~R~~H~~ga 90 (215)
T CHL00070 31 NIFYCLGGITLTCFLVQVATGFAMTFYYRPTV--TEAFAS----------VQY--------IMTEVNFGWLIRSVHRWSA 90 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHH----------HHH--------HHcccccHHHHHHHHHHHH
Confidence 44555688999999999999999988776531 111110 000 011101121 136788887
Q ss_pred HHHHHHHHHHHhheeec-cCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 283 IALFAIGTLQMFAMLLR-PKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 283 ~~~~~l~~~Q~l~~~~r-p~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
-+.++++.+.++-+++. ..|+ + | ..-++.|.+++++.+...++|..+..
T Consensus 91 s~~~~~~~lH~~r~~~~gsYk~-p-r----e~~W~~Gv~l~~l~m~~af~GY~Lpw 140 (215)
T CHL00070 91 SMMVLMMILHVFRVYLTGGFKK-P-R----ELTWVTGVVLAVLTVSFGVTGYSLPW 140 (215)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC-C-c----ccCcHHHHHHHHHHHHHHHccccCCc
Confidence 78888888887755542 1111 1 1 12357888888888888888887753
No 96
>PHA02898 virion envelope protein; Provisional
Probab=37.36 E-value=2.1e+02 Score=22.72 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHcccccCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015780 315 WSLGYSVIVLSIINIFEGFDILDP--EKKWKRAYIGILIFLGAVAALLEAITWVIVLK 370 (400)
Q Consensus 315 ~~~G~~~~~lg~~ni~~Gl~l~~~--~~~~~~~~~~~~~~~~~~~i~lei~~w~~~~~ 370 (400)
.+.|.++++++.+=.+.-+..... +..|..+= ++++++++.+++-++-+..++|
T Consensus 15 li~GIiLL~~ACIfAfidfSK~~~~~~~~wRalS--ii~FIlgivl~lG~~ifs~y~r 70 (92)
T PHA02898 15 VAFGIILLIVACICAYIELSKSEKPADSALRSIS--IISFILAIILILGIIFFKGYNM 70 (92)
T ss_pred HHHHHHHHHHHHHHheehhhcCCCcchhHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777666665555443 34566433 2344444455555555555543
No 97
>COG2149 Predicted membrane protein [Function unknown]
Probab=37.19 E-value=1.8e+02 Score=24.41 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=9.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHH
Q 015780 307 RLYWNIYHWSLGYSVIVLSIINI 329 (400)
Q Consensus 307 r~~~~~~H~~~G~~~~~lg~~ni 329 (400)
|+..-|+---+|....-.++.+.
T Consensus 24 RTFLAWiRTsLallafGvai~~f 46 (120)
T COG2149 24 RTFLAWIRTSLALLAFGVAIDQF 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 98
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=36.65 E-value=67 Score=25.45 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccC
Q 015780 360 LEAITWVIVLKRKNGNSVKHHHSING 385 (400)
Q Consensus 360 lei~~w~~~~~~~~~~~~~~~~~~~~ 385 (400)
+-++-|+..+++||+.++.-|.-|=+
T Consensus 46 l~VilwfvCC~kRkrsRrPIYrPvI~ 71 (94)
T PF05393_consen 46 LLVILWFVCCKKRKRSRRPIYRPVIG 71 (94)
T ss_pred HHHHHHHHHHHHhhhccCCccccccc
Confidence 33455666666665554555666554
No 99
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=36.62 E-value=3.5e+02 Score=28.00 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015780 346 YIGILIFLGAVAALLEAITWVIVLKR 371 (400)
Q Consensus 346 ~~~~~~~~~~~~i~lei~~w~~~~~~ 371 (400)
-....+......++.-+..|...|+|
T Consensus 180 H~~~aa~~~g~f~v~~v~A~~llr~~ 205 (436)
T PF01654_consen 180 HMLLAAYLTGGFVVAGVSAYYLLRGR 205 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444555555677777777766544
No 100
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=34.94 E-value=5.8e+02 Score=27.48 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=40.2
Q ss_pred cchhhcchhHHHHHHH-HHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhh
Q 015780 203 RRRRNTHGVLNAVSWG-VLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIK 265 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~-il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 265 (400)
+.....|..++.++.. +.+|.+.-++-.++.. ....|-++=+-+..+++++..+|+++|-.
T Consensus 168 ~~wl~iHpp~l~lgYa~~~v~fa~a~~~Ll~~~--~~~~~~~~~~~~~~~gw~fLT~GI~lG~~ 229 (571)
T PRK10369 168 HPGLIFHPPLLYLGYGGLMVAASVALASLLRGE--FDAACARICWRWALPGWSALTAGIILGSW 229 (571)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999997 5556665444333311 11234444445567799999999999865
No 101
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=34.24 E-value=3.7e+02 Score=24.61 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=40.2
Q ss_pred CCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhhee---------eccCCCCCCc
Q 015780 237 ANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAML---------LRPKPDHKYR 307 (400)
Q Consensus 237 ~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~---------~rp~~~~~~r 307 (400)
.+|+|.++-..+-.++.+..+-|+. .+... --+..|++++++..+ .+|+ .|+.-+..+|
T Consensus 91 tdp~lm~lDssLl~lg~~aLlsgit-aff~~---------nA~~~GlItlll~a~--vgGfamy~my~y~yr~~ad~sqr 158 (226)
T COG4858 91 TDPWLMWLDSSLLFLGAMALLSGIT-AFFQK---------NAQVYGLITLLLTAV--VGGFAMYIMYYYAYRMRADNSQR 158 (226)
T ss_pred CCceEEEecccHHHHHHHHHHHHHH-HHHhc---------CCcchhHHHHHHHHH--hhhHHHHHHHHHHHHhhcccccC
Confidence 4566666666655555555444432 22211 134567776665432 2222 2444433334
Q ss_pred -ccchhhhHHHHHHHHHHHHHHHHHcc
Q 015780 308 -LYWNIYHWSLGYSVIVLSIINIFEGF 333 (400)
Q Consensus 308 -~~~~~~H~~~G~~~~~lg~~ni~~Gl 333 (400)
..|+.+-...+..++=+++. +..++
T Consensus 159 ~~~~K~~lv~~~sm~lWi~v~-i~t~~ 184 (226)
T COG4858 159 PGTWKYLLVAVLSMLLWIAVM-IATVF 184 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 56776666655544333332 44444
No 102
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=34.18 E-value=4.4e+02 Score=25.44 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=39.6
Q ss_pred cccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 275 YNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 275 ~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
...|-.++++++.++....+...-+.+ ...+.....--+++...+.++..+++.+|....+
T Consensus 131 ~~~Hl~~a~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~qi~lGa~va~ 191 (302)
T PF02628_consen 131 VTLHLLLALLIFALLVWLALRARRPEE--SPRRLPRPRRLRWLAWAALVLVFIQIALGALVAG 191 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc--cccccccchhHHHHHHHHHHHHHHHHhccceecc
Confidence 578999999999888766554433211 1111122233346677788899999999987654
No 103
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=33.92 E-value=2e+02 Score=21.36 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=14.8
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHc
Q 015780 306 YRLYWNIYHWSLGYSVIVLSIINIFEG 332 (400)
Q Consensus 306 ~r~~~~~~H~~~G~~~~~lg~~ni~~G 332 (400)
.|+...|+.--+..+...+++.+....
T Consensus 7 ERT~LaW~Rt~l~l~~~g~~l~~~~~~ 33 (73)
T PF02656_consen 7 ERTFLAWIRTALALVGVGLALLRFFSL 33 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 366666666555555555555554433
No 104
>CHL00070 petB cytochrome b6
Probab=33.72 E-value=1.1e+02 Score=28.49 Aligned_cols=74 Identities=11% Similarity=0.149 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHHHhheee-----ccCCC------------CCCcccchhhhHHHHHHHHHHHHHHHHHccccc--CCC-
Q 015780 280 NIGIALFAIGTLQMFAMLL-----RPKPD------------HKYRLYWNIYHWSLGYSVIVLSIINIFEGFDIL--DPE- 339 (400)
Q Consensus 280 ~lG~~~~~l~~~Q~l~~~~-----rp~~~------------~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~--~~~- 339 (400)
.+|-++..+.++|++.|++ .|... -+.-...+.+|.+-.-+.+++..+-++-|+..- ..+
T Consensus 35 ~~G~ll~~~~~iqiiTGi~L~~~Y~p~~~~Af~Sv~~I~~ev~~Gwl~R~~H~~gas~~~~~~~lH~~r~~~~gsYk~pr 114 (215)
T CHL00070 35 CLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPR 114 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 4566666666666654432 33321 133456778999999999999999998887643 222
Q ss_pred -CcchhHHHHHHHHH
Q 015780 340 -KKWKRAYIGILIFL 353 (400)
Q Consensus 340 -~~~~~~~~~~~~~~ 353 (400)
..|.+..+.++.++
T Consensus 115 e~~W~~Gv~l~~l~m 129 (215)
T CHL00070 115 ELTWVTGVVLAVLTV 129 (215)
T ss_pred ccCcHHHHHHHHHHH
Confidence 34666555444333
No 105
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=33.46 E-value=1.9e+02 Score=25.82 Aligned_cols=12 Identities=17% Similarity=0.478 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 015780 219 VLIPMGAMIARY 230 (400)
Q Consensus 219 il~P~gil~aR~ 230 (400)
+|+-+|+++.++
T Consensus 6 iL~~~~~l~~~l 17 (182)
T PF09323_consen 6 ILLGFGILLFYL 17 (182)
T ss_pred HHHHHHHHHHHH
Confidence 333344444433
No 106
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=33.06 E-value=3.8e+02 Score=24.37 Aligned_cols=46 Identities=26% Similarity=0.423 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHhhee-eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccCCC
Q 015780 280 NIGIALFAIGTLQMFAML-LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDPE 339 (400)
Q Consensus 280 ~lG~~~~~l~~~Q~l~~~-~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~ 339 (400)
.+++...+-.++|.+.++ .|+.+ + . .-.++.|++.+..|+.+...|
T Consensus 106 lia~~~i~~GI~ri~~~~~~~~~~-G---~----------~w~ii~Gvl~ii~g~ill~~P 152 (185)
T COG3247 106 LIAIWFIASGILRIVVAFRLRSLP-G---W----------WWMIISGVLGIIAGLILLFNP 152 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHccccC-C---c----------HHHHHHHHHHHHHHHHHHHcc
Confidence 555555555566655444 34433 2 1 124566777777777766544
No 107
>PRK03735 cytochrome b6; Provisional
Probab=32.79 E-value=1.2e+02 Score=28.51 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHhheee-----ccCCC------------CCCcccchhhhHHHHHHHHHHHHHHHHHccccc--CCC-
Q 015780 280 NIGIALFAIGTLQMFAMLL-----RPKPD------------HKYRLYWNIYHWSLGYSVIVLSIINIFEGFDIL--DPE- 339 (400)
Q Consensus 280 ~lG~~~~~l~~~Q~l~~~~-----rp~~~------------~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~--~~~- 339 (400)
.+|-++..+.++|++.|++ .|... -..-...+.+|++-..+.+++..+-++-|+..- ..+
T Consensus 43 ~~G~l~~~~~~iqi~TGi~L~~~Y~P~~~~A~~Sv~~I~~ev~~GwliR~~H~~gas~~~~~~~lH~~r~~~~gsYk~pr 122 (223)
T PRK03735 43 CFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPR 122 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHcccccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5677777777778765542 34322 133456778999999999999999988887642 222
Q ss_pred -CcchhHHHHHHHHH
Q 015780 340 -KKWKRAYIGILIFL 353 (400)
Q Consensus 340 -~~~~~~~~~~~~~~ 353 (400)
..|.+..+.++.++
T Consensus 123 e~~W~~Gv~l~~l~~ 137 (223)
T PRK03735 123 ELNWVVGVLIFFVTV 137 (223)
T ss_pred CceeHHHHHHHHHHH
Confidence 34766555444433
No 108
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=32.66 E-value=4.9e+02 Score=28.39 Aligned_cols=61 Identities=10% Similarity=-0.035 Sum_probs=41.1
Q ss_pred cchhhcchhHHHHHHH-HHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhh
Q 015780 203 RRRRNTHGVLNAVSWG-VLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIK 265 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~-il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~ 265 (400)
+.....|.-++.++.. +.+|.+.-++-.++.. .+..|-++=+.+..+++++..+|+++|-.
T Consensus 166 ~~~l~iHpp~l~lgya~~~v~f~~a~~~L~~~~--~~~~~~~~~~~~~~~g~~~LT~GI~~G~~ 227 (628)
T TIGR03145 166 DIGLIFHPPLLYLGYVGFAVNFAMALAALISGH--LDAAVARWSRPWVLLSWVFLTGGIMLGSW 227 (628)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999986 4555554443333321 12246566666778899999999999865
No 109
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=32.59 E-value=1.6e+02 Score=28.78 Aligned_cols=35 Identities=6% Similarity=0.249 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHcccccCCCCcchhH
Q 015780 311 NIYHWSLGYSVIVLSIINIFEGFDILDPEKKWKRA 345 (400)
Q Consensus 311 ~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~~~~~~~ 345 (400)
.+.|..+-.+++++-|.+++.|+.++.-+..|...
T Consensus 63 ~~fr~~~a~I~yivlw~~l~Stl~l~slg~~wv~~ 97 (308)
T PF14800_consen 63 RYFRLLVAVIFYIVLWANLYSTLQLFSLGSHWVGW 97 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHccchhhhcccHHHHH
Confidence 35688889999999999999999999766666653
No 110
>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.
Probab=32.21 E-value=2.7e+02 Score=25.01 Aligned_cols=51 Identities=24% Similarity=0.086 Sum_probs=26.3
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHhhhhcccC------CcchhhhhHhHHHHHHHHHH
Q 015780 206 RNTHGVLNAVSWGVLIPMGAMIARYLKVFKTA------NPAWFYLHVACQASGYIVGV 257 (400)
Q Consensus 206 ~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~------~~~Wf~~H~~~q~~~~~~~i 257 (400)
+..| +++++++.+++..|..+.........+ ...+..+|..+..+-.++.+
T Consensus 8 R~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~l~l 64 (211)
T TIGR02125 8 RLFH-WVRALAIFVLIVTGFYIAYPFLSPPSGEAVHFLQGYIRFVHFAAGFVLIAVLL 64 (211)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHcCCCcCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 467788888888887654221110000 11234678877655444433
No 111
>PF15345 TMEM51: Transmembrane protein 51
Probab=32.07 E-value=64 Score=30.27 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHcc
Q 015780 315 WSLGYSVIVLSIINIFEGF 333 (400)
Q Consensus 315 ~~~G~~~~~lg~~ni~~Gl 333 (400)
-.+|..+++||++-+...+
T Consensus 10 ~AiG~Gml~LGiiM~vW~~ 28 (233)
T PF15345_consen 10 TAIGVGMLALGIIMIVWNL 28 (233)
T ss_pred HHHhHhHHHHhhHheeeee
Confidence 3567777777777665443
No 112
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=32.04 E-value=4.2e+02 Score=24.66 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=34.1
Q ss_pred chhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCc------chhhhhHhHHHHHHHHHHHHHhhhhh
Q 015780 204 RRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANP------AWFYLHVACQASGYIVGVAGWGTGIK 265 (400)
Q Consensus 204 ~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~------~Wf~~H~~~q~~~~~~~i~g~~l~~~ 265 (400)
..+..| +++++++.+++..|..+..-+.......+ ....+|..+..+-.++.+.=++.++.
T Consensus 17 ~~Ri~H-W~~Al~i~~l~~tG~~i~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~Rl~w~~~ 83 (235)
T PRK10171 17 PVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFV 83 (235)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhCcCCCCCchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556 78888999999988776421111000011 11357988776655555555555554
No 113
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=31.78 E-value=1.8e+02 Score=21.67 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=25.0
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 308 LYWNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 308 ~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
+.++.+-+++..+++++|.+.+-.+..+.+
T Consensus 5 ~~fk~iW~~~DIi~Fila~i~i~it~F~~n 34 (63)
T PF06341_consen 5 KFFKTIWKYFDIILFILAMIFINITAFLIN 34 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777779999999999999999887765
No 114
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=31.44 E-value=5.8e+02 Score=26.06 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.7
Q ss_pred cccccchhHHHHHHHHHHHh
Q 015780 275 YNKHRNIGIALFAIGTLQMF 294 (400)
Q Consensus 275 ~~~H~~lG~~~~~l~~~Q~l 294 (400)
+..|++.|+..++|.++-.+
T Consensus 76 Y~~HK~~sIlailL~l~H~~ 95 (438)
T COG4097 76 YRFHKYTSILAILLLLAHNF 95 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999988865
No 115
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=30.46 E-value=1.6e+02 Score=21.40 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh---c-ccCCcchhhhhHhHHH
Q 015780 211 VLNAVSWGVLIPMGAMIARYLKV---F-KTANPAWFYLHVACQA 250 (400)
Q Consensus 211 ~lm~~aw~il~P~gil~aR~~k~---~-~~~~~~Wf~~H~~~q~ 250 (400)
.++.+++.+++=.|+++.+...+ + ...++.|..+|...-.
T Consensus 7 ~~l~~~~~~~~iSGi~l~~~~~~~~~~~~~~~~~~~~iH~~~g~ 50 (64)
T PF14358_consen 7 LLLLVSFLVLAISGILLSFVPFPGLPFLGLNKHFWRNIHLWAGY 50 (64)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccCCcHHHHHHHHHHHHH
Confidence 35667777777777777655332 1 1122456666655533
No 116
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=30.21 E-value=1.8e+02 Score=26.60 Aligned_cols=110 Identities=17% Similarity=0.185 Sum_probs=66.6
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCC-CcccccchhH
Q 015780 205 RRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGI-KYNKHRNIGI 283 (400)
Q Consensus 205 ~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~-~~~~H~~lG~ 283 (400)
....=|.+..+++.+..-.|++++-|+.+-. ...| +.+- ..+.+-.-|+ -.+.|.+-.-
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~La~~Y~p~~--~~A~-------~Sv~-----------~i~~ev~~G~liR~~H~~gas 80 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFLAMHYTPDV--TLAF-------SSVQ-----------YIMRDVNFGWLIRSLHANGAS 80 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHH-------HHHH-----------HHHccCcchHHHHHHHHHHHH
Confidence 3455588888999999999999988876531 1111 0000 0011111122 2367887777
Q ss_pred HHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccCCC
Q 015780 284 ALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDPE 339 (400)
Q Consensus 284 ~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~ 339 (400)
..++++.+..+-+++.. .+|+.. ..-|+.|.+++++.++..++|..+....
T Consensus 81 ~~~~~~~lH~~r~~~~g----sY~~pr-e~~W~~G~~l~~l~~~~af~GY~Lpw~q 131 (200)
T cd00284 81 MFFLMLYLHIFRGLYYG----SYKKPR-ELTWVIGVILLLLTMATAFMGYVLPWGQ 131 (200)
T ss_pred HHHHHHHHHHHHHHHHH----Hhcchh-HHHHHHHHHHHHHHHHHHHcccccCchh
Confidence 77777777776555421 111111 2347889999999999999998876543
No 117
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=30.07 E-value=61 Score=27.09 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 015780 210 GVLNAVSWGVLIPMGAMIARY 230 (400)
Q Consensus 210 g~lm~~aw~il~P~gil~aR~ 230 (400)
-.+|+++|+++.|+|..+.-|
T Consensus 12 Ia~mVlGFi~fWPlGla~Lay 32 (115)
T PF11014_consen 12 IAAMVLGFIVFWPLGLALLAY 32 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999876554
No 118
>PF02628 COX15-CtaA: Cytochrome oxidase assembly protein; InterPro: IPR003780 This entry represents 2 activities required for heme biosynthesis: Protoheme IX farnesyltransferase converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. Heme A synthase catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group. The entry contains CtaA, which is required for cytochrome aa3 biosynthesis and sporulation in Bacillus subtilis [] and in Saccharomyces cerevisiae (Baker's yeast) the COX15 protein is required for cytochrome c oxidase assembly.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006461 protein complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=30.03 E-value=3.6e+02 Score=26.04 Aligned_cols=89 Identities=10% Similarity=-0.095 Sum_probs=55.7
Q ss_pred hhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhheeeccCCCCCCcccchhhhHHHHHH
Q 015780 241 WFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFAMLLRPKPDHKYRLYWNIYHWSLGYS 320 (400)
Q Consensus 241 Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~~~~rp~~~~~~r~~~~~~H~~~G~~ 320 (400)
+=+.|+.+-.+..++.++.++..+...+..+ .=.+....++++..+|.+.|...-...- ..++.--.|-.++.+
T Consensus 67 ~E~~HR~~~~~~gl~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~Q~~lG~~~V~~~l-~~~~~~~~Hl~~a~~ 140 (302)
T PF02628_consen 67 IEWGHRLLAGLVGLLILALAVWAWRKRRIRR-----RLRWLALLALVLVILQGLLGAWTVLSGL-VSPYVVTLHLLLALL 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-----chHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 3468999877666666666655554332221 2236777888899999754433211110 134557899999999
Q ss_pred HHHHHHHHHHHcccc
Q 015780 321 VIVLSIINIFEGFDI 335 (400)
Q Consensus 321 ~~~lg~~ni~~Gl~l 335 (400)
++.+-......-...
T Consensus 141 ~~~~l~~~~~~~~~~ 155 (302)
T PF02628_consen 141 IFALLVWLALRARRP 155 (302)
T ss_pred HHHHHHHHHHHhcCc
Confidence 988877776665554
No 119
>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed
Probab=29.94 E-value=91 Score=28.72 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHh
Q 015780 212 LNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVA 247 (400)
Q Consensus 212 lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~ 247 (400)
+-++||.++.|+++...+..+.. -++.|.++|..
T Consensus 119 ~G~ia~~lLl~LaiTS~~~~~rr--Lg~~Wk~LH~l 152 (205)
T PRK05419 119 VGMAAFLILLPLALTSTRASQRR--LGKRWQKLHRL 152 (205)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHH
Confidence 35567777778777777654431 12367777765
No 120
>PLN02631 ferric-chelate reductase
Probab=29.93 E-value=1.1e+02 Score=33.68 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHHHhheee---ccCCCCCCcccch--hhhHHHHHHHHHHHHHHHHHccccc
Q 015780 275 YNKHRNIGIALFAIGTLQMFAMLL---RPKPDHKYRLYWN--IYHWSLGYSVIVLSIINIFEGFDIL 336 (400)
Q Consensus 275 ~~~H~~lG~~~~~l~~~Q~l~~~~---rp~~~~~~r~~~~--~~H~~~G~~~~~lg~~ni~~Gl~l~ 336 (400)
...|+++|-++++++++-.+.... +...-.. +..|. +.-.+.|.+.++++.+-.+..+...
T Consensus 189 i~yHRWlGri~~~la~iH~i~y~i~~~~~~~~~~-~~~w~~~~~~~~~GviA~v~~~lm~~~Sl~~~ 254 (699)
T PLN02631 189 IKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLME-TFAWNPTYVPNLAGTIAMVIGIAMWVTSLPSF 254 (699)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh-hhhcccccchHHHHHHHHHHHHHHHHhccHHH
Confidence 468999999999999988764432 1111111 11111 1123678888888887777777654
No 121
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=29.83 E-value=1.7e+02 Score=30.20 Aligned_cols=35 Identities=14% Similarity=-0.053 Sum_probs=14.6
Q ss_pred eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHHc
Q 015780 298 LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEG 332 (400)
Q Consensus 298 ~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~G 332 (400)
+|.+++.+.|++..+.+.+.++.+-+++++-+...
T Consensus 382 lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~ 416 (474)
T TIGR03813 382 LRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALA 416 (474)
T ss_pred HHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHH
Confidence 45333333454444444443444444444444333
No 122
>PF13994 PgaD: PgaD-like protein
Probab=29.73 E-value=1.8e+02 Score=24.84 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 015780 345 AYIGILIFLGA 355 (400)
Q Consensus 345 ~~~~~~~~~~~ 355 (400)
.|..++++.++
T Consensus 66 ~y~~i~~~~a~ 76 (138)
T PF13994_consen 66 IYLLIALVNAV 76 (138)
T ss_pred HHHHHHHHHHH
Confidence 34444443333
No 123
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=28.62 E-value=4.4e+02 Score=23.80 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=16.9
Q ss_pred chhhhhHhHHHHHHHHHHHHHhhhhh
Q 015780 240 AWFYLHVACQASGYIVGVAGWGTGIK 265 (400)
Q Consensus 240 ~Wf~~H~~~q~~~~~~~i~g~~l~~~ 265 (400)
.|+.+|..+-.+++.+..++++.++.
T Consensus 70 ~~l~iHv~~~~~~ya~~~ia~~~al~ 95 (214)
T PF01578_consen 70 PWLYIHVPLALLGYAAFAIAALAALL 95 (214)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776666666655544
No 124
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=28.46 E-value=2.1e+02 Score=23.93 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=30.8
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHh
Q 015780 243 YLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMF 294 (400)
Q Consensus 243 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l 294 (400)
.+|..++.+..++.+++++.+++.....+ +-.|-.++..+++..+.-.+
T Consensus 29 iinliiG~vT~l~VLvtii~afvf~~~~p---~p~~iffavcI~l~~~s~~l 77 (118)
T PF10856_consen 29 IINLIIGAVTSLFVLVTIISAFVFPQDPP---KPLHIFFAVCILLICISAIL 77 (118)
T ss_pred EEEeehHHHHHHHHHHHHhheEEecCCCC---CceEEehHHHHHHHHHHHHh
Confidence 56777777777777777777776553321 23566666666665554443
No 125
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.31 E-value=2.6e+02 Score=22.79 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=19.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015780 339 EKKWKRAYIGILIFLGAVAALLEAITWVIVL 369 (400)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~lei~~w~~~~ 369 (400)
++.|..+..+++.++++..++.-..+|-.++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4778887777777666666665555654443
No 126
>PF15284 PAGK: Phage-encoded virulence factor
Probab=28.04 E-value=61 Score=23.82 Aligned_cols=18 Identities=44% Similarity=0.497 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhhhcc
Q 015780 4 KAIACALFFSFVAALFAS 21 (400)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (400)
|.+.++|+|+++++.|.+
T Consensus 5 ksifL~l~~~LsA~~FSa 22 (61)
T PF15284_consen 5 KSIFLALVFILSAAGFSA 22 (61)
T ss_pred HHHHHHHHHHHHHhhhhH
Confidence 678899988888877754
No 127
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=27.94 E-value=1.7e+02 Score=30.23 Aligned_cols=26 Identities=15% Similarity=0.251 Sum_probs=19.0
Q ss_pred CCCCCcccchhhhHHHHHHHHHHHHH
Q 015780 302 PDHKYRLYWNIYHWSLGYSVIVLSII 327 (400)
Q Consensus 302 ~~~~~r~~~~~~H~~~G~~~~~lg~~ 327 (400)
.+++.-.+||..|.+-|-++-++...
T Consensus 150 eRG~~~siWn~shNiGGal~~~~~~l 175 (448)
T COG2271 150 ERGTWWSIWNTSHNIGGALAPLVALL 175 (448)
T ss_pred ccCceEEEehhhhhcccchHHHHHHH
Confidence 34455578999999999877766543
No 128
>PRK11513 cytochrome b561; Provisional
Probab=26.95 E-value=3.3e+02 Score=24.19 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=33.0
Q ss_pred chhhhhHhHHHHHHHHHHHHHhhhhhcccCC--CC---CCcccccchhHHHHHHHHHHHhheee
Q 015780 240 AWFYLHVACQASGYIVGVAGWGTGIKLGNDS--PG---IKYNKHRNIGIALFAIGTLQMFAMLL 298 (400)
Q Consensus 240 ~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~~---~~~~~H~~lG~~~~~l~~~Q~l~~~~ 298 (400)
.++.+|..+-++.+++++.=++..+...... ++ +....=...-..+.++++++|+.|++
T Consensus 40 ~~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~ 103 (176)
T PRK11513 40 LINMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLV 103 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899888777777766655555433211 11 11111112235666788888887775
No 129
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=26.82 E-value=3.7e+02 Score=22.30 Aligned_cols=45 Identities=7% Similarity=0.009 Sum_probs=28.8
Q ss_pred hhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHh
Q 015780 242 FYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMF 294 (400)
Q Consensus 242 f~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l 294 (400)
.+-|..--+++++++++.|.+... + .+ .....-.++++++++|++
T Consensus 25 ~k~yviGFiLSiiLT~I~F~~V~~--~---~l---~~~~~~~~I~~lAvvQi~ 69 (110)
T TIGR02908 25 MKKQIVTFALMIFLTLIAFFAVML--D---EI---DKWFVIPFILLLAAVQVA 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--c---cC---ChhHHHHHHHHHHHHHHH
Confidence 356677777777777777766533 1 12 344566677788888974
No 130
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=26.39 E-value=5.5e+02 Score=26.28 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=16.7
Q ss_pred eccCCCCCCcccchhhhHHHHHHHHHHHHHHHHH
Q 015780 298 LRPKPDHKYRLYWNIYHWSLGYSVIVLSIINIFE 331 (400)
Q Consensus 298 ~rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~ 331 (400)
.||..+. +. +..+..+..+-++.....+..
T Consensus 344 ~~Py~~~--~~--n~~~~~~~~~~~i~~~l~i~f 373 (438)
T PF06011_consen 344 LRPYMDK--RT--NVLNIILSVVRLITLFLLIAF 373 (438)
T ss_pred hChhccc--cc--cHHHHHHHHHHHHHHHHHHHH
Confidence 4676542 22 667776666665555544444
No 131
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=26.27 E-value=8.1e+02 Score=26.52 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHcccccCCC-CcchhHHH
Q 015780 315 WSLGYSVIVLSIINIFEGFDILDPE-KKWKRAYI 347 (400)
Q Consensus 315 ~~~G~~~~~lg~~ni~~Gl~l~~~~-~~~~~~~~ 347 (400)
-|+|.++++.|++-..+|+...+.+ .+|..+.+
T Consensus 240 D~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~V 273 (599)
T PF06609_consen 240 DWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHV 273 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc
Confidence 4799999999999999999998764 46765444
No 132
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=26.23 E-value=4.2e+02 Score=24.89 Aligned_cols=26 Identities=27% Similarity=0.186 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcccccCC
Q 015780 313 YHWSLGYSVIVLSIINIFEGFDILDP 338 (400)
Q Consensus 313 ~H~~~G~~~~~lg~~ni~~Gl~l~~~ 338 (400)
+....+...++.+......|+...++
T Consensus 104 y~~~~~~~~~~~s~~~~~~~~~~~~~ 129 (257)
T PF10320_consen 104 YLIILLIFPVIYSIFFTVIGFLYRDD 129 (257)
T ss_pred chhhHhHHHHHHHHHHHhheeEecCC
Confidence 66666777777888888888766554
No 133
>COG3038 CybB Cytochrome B561 [Energy production and conversion]
Probab=26.01 E-value=4.5e+02 Score=23.79 Aligned_cols=93 Identities=12% Similarity=-0.041 Sum_probs=52.2
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCC--C---CCCccccc
Q 015780 205 RRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDS--P---GIKYNKHR 279 (400)
Q Consensus 205 ~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~--~---~~~~~~H~ 279 (400)
.+..| |+|++++.+.+-+|.+..+.-|... .....+.+|..+-++-.++++.=++.-+...... + .+....=+
T Consensus 12 ~i~lH-Wl~allv~~~~~~g~~~~~~~~~~~-~~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p~~~~~~~~~~~~aA~ 89 (181)
T COG3038 12 QIALH-WLMALLVIGAFALGELMGFLPRGPG-LYFLLYELHKSIGILVLALMVLRLLWRLRNPAPPIVPGPPPWQRKAAK 89 (181)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHHH
Confidence 34455 7888888888888888776544321 1123468999988877777776655554443321 1 11111111
Q ss_pred chhHHHHHHHHHHHhheeec
Q 015780 280 NIGIALFAIGTLQMFAMLLR 299 (400)
Q Consensus 280 ~lG~~~~~l~~~Q~l~~~~r 299 (400)
..=+.+.++++.-|+.|++.
T Consensus 90 ~~Hl~LY~l~lalPlsG~l~ 109 (181)
T COG3038 90 LGHLALYLLMLALPLSGYLL 109 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 11234445555567777654
No 134
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=25.80 E-value=4e+02 Score=26.42 Aligned_cols=87 Identities=13% Similarity=-0.043 Sum_probs=35.4
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHh---heeeccCCCCCCc---ccchhhhHHH
Q 015780 244 LHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMF---AMLLRPKPDHKYR---LYWNIYHWSL 317 (400)
Q Consensus 244 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l---~~~~rp~~~~~~r---~~~~~~H~~~ 317 (400)
++..+..+..++...-++..+....+.. ..-..+|-+.+++..+-.. .-++||.++.... ...+..|..+
T Consensus 125 ~r~~l~~~~~~~~pl~~~~~~~~~~~~~----~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 200 (340)
T PF12794_consen 125 LRRQLRWLIWVLVPLLFISIFAENLPDG----LARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQPKPDSWIHRLRYLW 200 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchh----hhhhhHHHHHHHHHHHHHHHHHHHHHccccccccCCCcchhHHHHHHH
Confidence 4444444444444444444433222211 2233666555554443322 2224554332211 2233444444
Q ss_pred HH---HHHHHHHHHHHHccc
Q 015780 318 GY---SVIVLSIINIFEGFD 334 (400)
Q Consensus 318 G~---~~~~lg~~ni~~Gl~ 334 (400)
.. ++.+.-++-+..|..
T Consensus 201 ~~~li~~Pl~li~la~~GY~ 220 (340)
T PF12794_consen 201 WPLLILAPLALIVLALLGYY 220 (340)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 33 333344445555554
No 135
>COG3698 Predicted periplasmic protein [Function unknown]
Probab=25.17 E-value=94 Score=29.02 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhhccccccc-CcCcccccccccccccccCCCCC-eEEEEEEecCCCeEEEEE---EEecCCCCceEEE
Q 015780 6 IACALFFSFVAALFASSYAQQ-TCGRQAFNNNKVYSTCTDLPVLN-SFLHWNYDQSTNTVDLAF---RHTTTSSSRWVAW 80 (400)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~C~~l~~~~-~~l~W~~~~~~~~i~i~~---~~~~~~~~gWvA~ 80 (400)
+.|.+.+.++. .+..++.+. .|.+.++.. .+|..|+.-|..+ ..|+|.-. .++ -.=.| .....+....+.|
T Consensus 7 ~~~~l~l~~la-~~~~pa~~~p~c~~~~~~g-~~ytvctvDP~~~~irlywkd~-aG~-py~sf~~L~~~l~~qg~~l~f 82 (250)
T COG3698 7 IALPLALAFLA-GSAQPAFAVPDCCAIRFAG-LTYTVCTVDPATDSIRLYWKDP-AGE-PYRSFHALLAALNKQGQSLLF 82 (250)
T ss_pred hHHHHHHHHHH-hhhchhhCCCchhhccCCc-eEEEEEEecCcccceEEEecCC-CCc-hhhhHHHHHHHHHhccceEEE
Confidence 44455444444 233333333 487754444 6899999766665 78999943 222 11111 1111124567888
Q ss_pred EeCCCCCCCCCCcE
Q 015780 81 ALNPSGQRMAGSQC 94 (400)
Q Consensus 81 Gfs~~g~~M~gsd~ 94 (400)
.+| +. |-..|.
T Consensus 83 AmN--~G-mY~~d~ 93 (250)
T COG3698 83 AMN--GG-MYHPDY 93 (250)
T ss_pred Eec--Cc-ccCCCC
Confidence 874 43 765554
No 136
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=24.33 E-value=25 Score=34.00 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=0.0
Q ss_pred chhhcchhHHHHHHHHH
Q 015780 204 RRRNTHGVLNAVSWGVL 220 (400)
Q Consensus 204 ~~~~~Hg~lm~~aw~il 220 (400)
+--..|..|.+-+-.+|
T Consensus 17 r~p~~~a~l~~~~llll 33 (381)
T PF05297_consen 17 RCPQPHASLLFGLLLLL 33 (381)
T ss_dssp -----------------
T ss_pred CCCCcchhHHHHHHHHH
Confidence 44577888776655544
No 137
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=24.31 E-value=8.1e+02 Score=25.39 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=8.5
Q ss_pred HHHHHHHHHccccc
Q 015780 323 VLSIINIFEGFDIL 336 (400)
Q Consensus 323 ~lg~~ni~~Gl~l~ 336 (400)
++|++.+.+|+.+.
T Consensus 309 l~Gii~~iiG~~~L 322 (436)
T COG1030 309 LLGIILFIIGLLLL 322 (436)
T ss_pred HHHHHHHHHhhhhc
Confidence 45666666666555
No 138
>PLN02292 ferric-chelate reductase
Probab=24.02 E-value=1.5e+02 Score=32.70 Aligned_cols=63 Identities=17% Similarity=-0.024 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHcccccCCCCcchhHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Q 015780 310 WNIYHWSLGYSVIVLSIINIFEGFDILDPEKKWKRAYIG-------ILIFLGAVAALLEAITWVIVLKRK 372 (400)
Q Consensus 310 ~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~~~~~~~~~~-------~~~~~~~~~i~lei~~w~~~~~~~ 372 (400)
++.+|+|+||++++++++=...=+.............-. +.++++.++.++-+..-...-|||
T Consensus 205 f~~yHRWlGrii~ll~~lH~i~y~i~~~~~~~~~~~~~w~~~~~~~i~G~iAlv~~~il~v~Sl~~iRR~ 274 (702)
T PLN02292 205 SIKYHIWLGHLVMTLFTSHGLCYIIYWISMNQVSQMLEWDRTGVSNLAGEIALVAGLVMWATTYPKIRRR 274 (702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccccchHHHHHHHHHHHHHHHHHHhhHHHHhc
No 139
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.94 E-value=1.1e+02 Score=21.02 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhcCC
Q 015780 358 ALLEAITWVIVLKRKNG 374 (400)
Q Consensus 358 i~lei~~w~~~~~~~~~ 374 (400)
+++-+..|..++|||++
T Consensus 21 ~F~gi~~w~~~~~~k~~ 37 (49)
T PF05545_consen 21 FFIGIVIWAYRPRNKKR 37 (49)
T ss_pred HHHHHHHHHHcccchhh
Confidence 33444456555444443
No 140
>PF14358 DUF4405: Domain of unknown function (DUF4405)
Probab=23.83 E-value=1.8e+02 Score=21.12 Aligned_cols=24 Identities=25% Similarity=0.661 Sum_probs=17.7
Q ss_pred CcccchhhhHHHHHHHHHHHHHHH
Q 015780 306 YRLYWNIYHWSLGYSVIVLSIINI 329 (400)
Q Consensus 306 ~r~~~~~~H~~~G~~~~~lg~~ni 329 (400)
.|..|+.+|.+.|+..+++..+=+
T Consensus 37 ~~~~~~~iH~~~g~~~~~l~~~Hl 60 (64)
T PF14358_consen 37 NKHFWRNIHLWAGYLFLILIILHL 60 (64)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887766543
No 141
>COG2149 Predicted membrane protein [Function unknown]
Probab=23.78 E-value=2.2e+02 Score=23.89 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=5.3
Q ss_pred chhHHHHHHHHHH
Q 015780 280 NIGIALFAIGTLQ 292 (400)
Q Consensus 280 ~lG~~~~~l~~~Q 292 (400)
.+|.++++..++-
T Consensus 58 ~lg~fii~~gil~ 70 (120)
T COG2149 58 LLGVFLILVGILL 70 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 142
>MTH00086 CYTB cytochrome b; Provisional
Probab=23.68 E-value=2e+02 Score=28.86 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=51.4
Q ss_pred HHHHHhhhhhcccCC---------------CCC-CcccccchhHHHHHHHHHHHhheee-ccCCCCCCcccchhhhHHHH
Q 015780 256 GVAGWGTGIKLGNDS---------------PGI-KYNKHRNIGIALFAIGTLQMFAMLL-RPKPDHKYRLYWNIYHWSLG 318 (400)
Q Consensus 256 ~i~g~~l~~~~~~~~---------------~~~-~~~~H~~lG~~~~~l~~~Q~l~~~~-rp~~~~~~r~~~~~~H~~~G 318 (400)
.+.|+.+++....+. .|+ -...|.+-.-..++++.+.+.-++. ...+ +. .=|+.|
T Consensus 34 iiTGi~L~~~Y~p~~~~Af~Sv~~I~~~v~~GwliR~~H~~gas~~f~~~ylHi~R~~~ygsy~-----~~---~~W~~G 105 (355)
T MTH00086 34 ILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYR-----LK---KVWISG 105 (355)
T ss_pred HHHHHHHHhhhcCCchhHHHHHHHHhCcccccHHHHHHHHhHHHHHHHHHHHHHHHHHHHcccC-----Cc---hHHHHh
Confidence 666888887754221 011 1367888777777777777775553 2222 11 127899
Q ss_pred HHHHHHHHHHHHHcccccCCCC
Q 015780 319 YSVIVLSIINIFEGFDILDPEK 340 (400)
Q Consensus 319 ~~~~~lg~~ni~~Gl~l~~~~~ 340 (400)
.+++++.+++.++|..+...+.
T Consensus 106 v~l~~l~m~~af~GYvLpw~qm 127 (355)
T MTH00086 106 LTIYLLVMMEAFMGYVLVWAQM 127 (355)
T ss_pred HHHHHHHHHHHHhhhhcccCch
Confidence 9999999999999998875543
No 143
>PF11158 DUF2938: Protein of unknown function (DUF2938); InterPro: IPR021329 This bacterial family of proteins has no known function. Some members are thought to be membrane proteins however this cannot be confirmed.
Probab=23.32 E-value=95 Score=27.20 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=31.9
Q ss_pred cccchhHHHHH--HHHHHHhhee--e--ccCCCCCCcccchhhhHHHHHHHHHHHHH
Q 015780 277 KHRNIGIALFA--IGTLQMFAML--L--RPKPDHKYRLYWNIYHWSLGYSVIVLSII 327 (400)
Q Consensus 277 ~H~~lG~~~~~--l~~~Q~l~~~--~--rp~~~~~~r~~~~~~H~~~G~~~~~lg~~ 327 (400)
+=-++|++..+ ..+.||..|. . |..+..+.|-.--..|..+|..+++.+.+
T Consensus 93 ~ali~G~~tvl~p~~imqP~lG~G~aas~tP~p~~~r~~sl~aH~vfG~gLyl~~~~ 149 (150)
T PF11158_consen 93 PALIFGLVTVLAPFFIMQPALGAGIAASKTPNPWKARLRSLIAHLVFGLGLYLSALA 149 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhccCCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34466776655 5688986544 2 32223333444456899999999987753
No 144
>PF14256 YwiC: YwiC-like protein
Probab=23.15 E-value=1.4e+02 Score=25.38 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=15.0
Q ss_pred cccchhHHHHHHHHHH-HhheeeccCC
Q 015780 277 KHRNIGIALFAIGTLQ-MFAMLLRPKP 302 (400)
Q Consensus 277 ~H~~lG~~~~~l~~~Q-~l~~~~rp~~ 302 (400)
.|-.+.+.-+.+.+.+ ++.-.+|.++
T Consensus 26 ~~~~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 26 AHLPLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4666666666555544 5655566544
No 145
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=22.97 E-value=1.5e+02 Score=27.28 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHHHhheee-----ccCCC------------CCCcccchhhhHHHHHHHHHHHHHHHHHcccc
Q 015780 280 NIGIALFAIGTLQMFAMLL-----RPKPD------------HKYRLYWNIYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 280 ~lG~~~~~l~~~Q~l~~~~-----rp~~~------------~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
.+|.++.....+|.+.|++ .|... -+.-...+.+|++-....+++-.+-++-|+..
T Consensus 24 ~~G~ll~~~~~iqiiTGi~La~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~ 96 (200)
T cd00284 24 NFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYY 96 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777765542 44432 13345677899999999999888888887765
No 146
>TIGR02891 CtaD_CoxA cytochrome c oxidase, subunit I. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115.
Probab=22.96 E-value=9e+02 Score=25.42 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred cchhhcchhHHHHHHHHHHHHHH---HHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhh------hhcccCCCCC
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGA---MIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTG------IKLGNDSPGI 273 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gi---l~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~------~~~~~~~~~~ 273 (400)
...+.+||.+|...|..-+-.|. ++.|..+.-.-..|++=.+...+...+.+++++++..+ .....+....
T Consensus 50 ~~~~T~Hg~~mif~~~~p~~~g~~~~lvp~~lg~~dl~~prln~~sfwl~~~~~~l~~~s~~~g~~~~~gwT~ypPls~~ 129 (506)
T TIGR02891 50 NQLFTMHGTIMIFLFAVPILAGFGNYLLPLMIGARDMAFPRLNAFSYWLYLFGGLLLLASFFTGGAPDTGWTMYPPLSSL 129 (506)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHHHHHHHHHhccCCCcCCCCeeCCCcccC
Q ss_pred CcccccchhHHHHHHH---------HHHHhheeeccCCCCC-CcccchhhhHHHHHHHHHHHHHHHHHc
Q 015780 274 KYNKHRNIGIALFAIG---------TLQMFAMLLRPKPDHK-YRLYWNIYHWSLGYSVIVLSIINIFEG 332 (400)
Q Consensus 274 ~~~~H~~lG~~~~~l~---------~~Q~l~~~~rp~~~~~-~r~~~~~~H~~~G~~~~~lg~~ni~~G 332 (400)
..++...+.+.++.+. .+..+.-+++.++++. .++.--..--++.-.++++-..-+..|
T Consensus 130 ~~~~~~~~~~~~~~l~l~gv~s~l~~in~i~Ti~~~r~~~~~~~~~pl~vw~~~~t~~l~~~~~p~l~~ 198 (506)
T TIGR02891 130 SGSPGVGVDLWLLGLHLLGISSILGAVNFIVTILKMRAPGMTLMRMPLFVWGILVTSILILLAFPVLIA 198 (506)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
No 147
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=22.94 E-value=2e+02 Score=19.18 Aligned_cols=11 Identities=9% Similarity=0.184 Sum_probs=4.7
Q ss_pred HHHHHHHHhcC
Q 015780 363 ITWVIVLKRKN 373 (400)
Q Consensus 363 ~~w~~~~~~~~ 373 (400)
+.++..++||.
T Consensus 23 ~~~YaCcykk~ 33 (38)
T PF02439_consen 23 MFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHccc
Confidence 33444444443
No 148
>cd01661 cbb3_Oxidase_I Cytochrome cbb3 oxidase subunit I. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found mainly in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two
Probab=22.76 E-value=8.4e+02 Score=25.62 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=37.7
Q ss_pred cchhhcchhHHHHHHHHHHHHHH---HHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhh
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGA---MIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGI 264 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gi---l~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~ 264 (400)
.+.+.+|+.+|..+|....-+|. ++.|..+.- -..+.+-.....+-.++.+++++++..|.
T Consensus 87 ~~~rt~H~~~~if~w~~~~~~g~~~ylvp~~~g~~-l~~~~l~~~~~w~~~~g~~l~~~~~~~G~ 150 (493)
T cd01661 87 GRLRPLHTNAVIFGFGGNALIATSFYVVQRTCRAR-LAGGNLAWFVFWGYNLFIVLAATGYLLGI 150 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 47889999999999998766664 334554421 11233323444455556666777776664
No 149
>TIGR00930 2a30 K-Cl cotransporter.
Probab=22.72 E-value=3.1e+02 Score=31.42 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=17.3
Q ss_pred CCcccchhhhHHHHHHHHHHHHHHHH
Q 015780 305 KYRLYWNIYHWSLGYSVIVLSIINIF 330 (400)
Q Consensus 305 ~~r~~~~~~H~~~G~~~~~lg~~ni~ 330 (400)
..|+.++++|+|+..+..++.++-++
T Consensus 490 ~~RP~fk~~~~~~sllG~l~c~~lmf 515 (953)
T TIGR00930 490 GWRPRFKYYHWWLSLLGASLCCAIMF 515 (953)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHH
Confidence 35777888898877766665554443
No 150
>PF11862 DUF3382: Domain of unknown function (DUF3382); InterPro: IPR021807 This entry represents the N-terminal domain of the LivHM type high-affinity branched-chain amino acid transport system permease proteins. The domain is about 100 amino acids in length, and is found associated with PF02653 from PFAM.
Probab=22.67 E-value=2.6e+02 Score=22.46 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhcccCCCCCCcccc-----cchhHHHHHHHHHHHhheee-ccCCCCC-----Ccc-cchhhhHHHHHH
Q 015780 253 YIVGVAGWGTGIKLGNDSPGIKYNKH-----RNIGIALFAIGTLQMFAMLL-RPKPDHK-----YRL-YWNIYHWSLGYS 320 (400)
Q Consensus 253 ~~~~i~g~~l~~~~~~~~~~~~~~~H-----~~lG~~~~~l~~~Q~l~~~~-rp~~~~~-----~r~-~~~~~H~~~G~~ 320 (400)
+.+.+.+.++|+...++........+ .+++++...-.++|.+--.+ |+.++.+ ... -....++|+..+
T Consensus 14 l~lvl~~pi~Gl~l~~~g~~L~~~~r~~~~~~~V~~~~~~~Fl~qL~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 93 (101)
T PF11862_consen 14 LALVLFGPIVGLKLDNQGGQLVLEPRWGLLAWWVAVAAAGRFLFQLFRPWLARRFKKAPSGVPVLPPDGLPSLQRWIIPL 93 (101)
T ss_pred HHHHHHHHheEEEEecCCcEEEEEecchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcCCCccccchHHHHHHH
Confidence 44556677788887754333322222 25666666677777662222 1211111 111 344678888888
Q ss_pred HHHHHHH
Q 015780 321 VIVLSII 327 (400)
Q Consensus 321 ~~~lg~~ 327 (400)
+++++++
T Consensus 94 llv~Alv 100 (101)
T PF11862_consen 94 LLVVALV 100 (101)
T ss_pred HHHHHHH
Confidence 8777653
No 151
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=22.58 E-value=4.5e+02 Score=21.83 Aligned_cols=77 Identities=10% Similarity=0.190 Sum_probs=40.1
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhh---eeeccCCCCCCcccchhhhHHHHH
Q 015780 243 YLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFA---MLLRPKPDHKYRLYWNIYHWSLGY 319 (400)
Q Consensus 243 ~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~---~~~rp~~~~~~r~~~~~~H~~~G~ 319 (400)
+-|..-.+++++++++.|.+... +.+ +.+..+ ++++.++++|++. -|++-+.++ -..|+..+-+++.
T Consensus 18 k~y~iGFvLsIiLT~ipF~~vm~-----~~~--~~~~~~-~~i~~lA~iQi~vqLvyFlHM~~~~--eg~w~~~~~iFt~ 87 (111)
T COG3125 18 KSYLIGFVLSIILTLIPFWVVMT-----GAL--SSTVTL-IIILGLAVIQILVHLVYFLHMNTKS--EGRWNMGALIFTI 87 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----ccc--chhhHH-HHHHHHHHHHHHHHHHHHhcccCCc--ccceehHHHHHHH
Confidence 45555556666666666655432 122 223333 4556677788642 222222111 1237778888877
Q ss_pred HHHHHHHHHH
Q 015780 320 SVIVLSIINI 329 (400)
Q Consensus 320 ~~~~lg~~ni 329 (400)
+++++-++-.
T Consensus 88 ~i~vivvvGS 97 (111)
T COG3125 88 FIIVIVVVGS 97 (111)
T ss_pred HHHHHHHHHH
Confidence 7666555443
No 152
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=22.44 E-value=1.5e+02 Score=26.56 Aligned_cols=58 Identities=7% Similarity=-0.082 Sum_probs=37.4
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhh
Q 015780 205 RRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGT 262 (400)
Q Consensus 205 ~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l 262 (400)
..++=.++|.++++++.-...+..-.+-.-.-.++..+++...+|.++.++.++|.++
T Consensus 69 ~Wkaa~~~~~~g~~Ll~~~~~~~L~~~c~~~~~~~sv~~i~g~~Q~~A~l~~~~g~~~ 126 (181)
T PF10242_consen 69 AWKAAAFFVGIGCVLLLLIALLSLFSCCFRSICSRSVFKICGWLQFVAGLCLLLGCLL 126 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEeeechHHHHHHHHHHHHhhee
Confidence 4677788888888886666554432221100023455788899999988888887544
No 153
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=22.38 E-value=1.4e+02 Score=23.64 Aligned_cols=25 Identities=4% Similarity=-0.106 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Q 015780 350 LIFLGAVAALLEAITWVIVLKRKNG 374 (400)
Q Consensus 350 ~~~~~~~~i~lei~~w~~~~~~~~~ 374 (400)
++.++++.+++...=|.+++|.||.
T Consensus 40 I~~iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Confidence 3444445566666667777766653
No 154
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=22.12 E-value=4.2e+02 Score=21.26 Aligned_cols=71 Identities=8% Similarity=-0.014 Sum_probs=39.7
Q ss_pred hhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHHHHHHHHHhh---eeeccCCCCCCcccchhhhHHHHHH
Q 015780 244 LHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALFAIGTLQMFA---MLLRPKPDHKYRLYWNIYHWSLGYS 320 (400)
Q Consensus 244 ~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~~l~~~Q~l~---~~~rp~~~~~~r~~~~~~H~~~G~~ 320 (400)
-|..--+++++++++.|.+.... .++ -...-.++++++++|.+- -+++-+.++ +..||....+++.+
T Consensus 8 ~yviGFiLSiiLT~i~F~~v~~~-----~~~---~~~~~~~i~~lA~iQi~VqL~~FLHm~~~~--~~~~n~~~l~ft~~ 77 (94)
T TIGR02901 8 KHVNGFILSLLLTFLALWVALYS-----DLP---LAMGLTIIIIFAFIQAGLQLIMFMHAGESE--DGKVQIYNIYYSAF 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-----cCC---hhHHHHHHHHHHHHHHHHHHHHheeecCCc--ccchHHHHHHHHHH
Confidence 46666677777777777665331 121 123334566778889742 233333222 23488887777766
Q ss_pred HHHH
Q 015780 321 VIVL 324 (400)
Q Consensus 321 ~~~l 324 (400)
+.++
T Consensus 78 i~~i 81 (94)
T TIGR02901 78 IALV 81 (94)
T ss_pred HHHH
Confidence 5443
No 155
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.04 E-value=60 Score=26.14 Aligned_cols=26 Identities=23% Similarity=0.111 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHhhhcccccccC
Q 015780 1 MVNKAIACALFFSFVAALFASSYAQQT 27 (400)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (400)
|-||++|+..+++.++ |+++++-+..
T Consensus 1 MaSK~~llL~l~LA~l-LlisSevaa~ 26 (95)
T PF07172_consen 1 MASKAFLLLGLLLAAL-LLISSEVAAR 26 (95)
T ss_pred CchhHHHHHHHHHHHH-HHHHhhhhhH
No 156
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.00 E-value=1.2e+02 Score=29.52 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhh
Q 015780 251 SGYIVGVAGWGTG 263 (400)
Q Consensus 251 ~~~~~~i~g~~l~ 263 (400)
..++++.+|++.+
T Consensus 182 GSA~LT~IGLaAA 194 (295)
T TIGR01478 182 SSALLGNIGIAAA 194 (295)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 157
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=21.87 E-value=3.1e+02 Score=27.06 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcccccC-CCCcchhHHHHHHHHHHHHH
Q 015780 313 YHWSLGYSVIVLSIINIFEGFDILD-PEKKWKRAYIGILIFLGAVA 357 (400)
Q Consensus 313 ~H~~~G~~~~~lg~~ni~~Gl~l~~-~~~~~~~~~~~~~~~~~~~~ 357 (400)
..-.+-.+.+...+++.+.|+...+ +...|..+|.+.++++++++
T Consensus 258 ~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~ 303 (316)
T PRK11085 258 IFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAG 303 (316)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3444555566666777777877653 34557777765555554433
No 158
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.81 E-value=2.1e+02 Score=23.83 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHccccc-C-----CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015780 315 WSLGYSVIVLSIINIFEGFDIL-D-----PEKKWKRAYIGILIFLGAVAALLEAITWVIVLKRKN 373 (400)
Q Consensus 315 ~~~G~~~~~lg~~ni~~Gl~l~-~-----~~~~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~~ 373 (400)
.+++.+++++|.+-+.+|+.+. + .++.|....+++++++=+++ .-.+.|..+|++|.
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y--~~~i~y~a~rg~~G 106 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFY--HTRIAYYAWRGYKG 106 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHH--HHHHHHHHHcCCCC
Confidence 4778888888888888886543 2 23455555444444444433 22344666654443
No 159
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=21.46 E-value=2.8e+02 Score=24.61 Aligned_cols=11 Identities=27% Similarity=0.329 Sum_probs=6.8
Q ss_pred hhhHHHHHHHH
Q 015780 312 IYHWSLGYSVI 322 (400)
Q Consensus 312 ~~H~~~G~~~~ 322 (400)
.-|+.+|-+++
T Consensus 149 ~RHR~IG~~Vl 159 (215)
T PF05084_consen 149 KRHRLIGAVVL 159 (215)
T ss_pred HHHHHHHHHHH
Confidence 45887775543
No 160
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=21.42 E-value=2.1e+02 Score=31.68 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=32.8
Q ss_pred cccccchhHHHHHHHHHHHhheee----ccCCCCCCcccch--hhhHHHHHHHHHHHHHHHHHcccc
Q 015780 275 YNKHRNIGIALFAIGTLQMFAMLL----RPKPDHKYRLYWN--IYHWSLGYSVIVLSIINIFEGFDI 335 (400)
Q Consensus 275 ~~~H~~lG~~~~~l~~~Q~l~~~~----rp~~~~~~r~~~~--~~H~~~G~~~~~lg~~ni~~Gl~l 335 (400)
...|+|+|-+++++.++-.+..+. ........ ..|. ....+.|.+.++++.+-..+-+..
T Consensus 192 i~fHrWlGr~~~llallH~i~~~i~w~~~~~~~~~~-~~w~~~~~~~~~G~IAlv~l~iL~itSl~~ 257 (722)
T PLN02844 192 VRYHVWLGTSMIFFATVHGASTLFIWGISHHIQDEI-WKWQKTGRIYLAGEIALVTGLVIWITSLPQ 257 (722)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh-hhhccCcchhhhHHHHHHHHHHHHHHhhHH
Confidence 368999999999998888754331 11110000 0011 111356777777666666555543
No 161
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=20.97 E-value=3e+02 Score=24.69 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHccc
Q 015780 314 HWSLGYSVIVLSIINIFEGFD 334 (400)
Q Consensus 314 H~~~G~~~~~lg~~ni~~Gl~ 334 (400)
++.+|=..+-++++-+++.+.
T Consensus 74 R~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 74 RRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 455666666666655555554
No 162
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=20.97 E-value=58 Score=27.53 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015780 345 AYIGILIFLGAVAALLEAITWVIVLK 370 (400)
Q Consensus 345 ~~~~~~~~~~~~~i~lei~~w~~~~~ 370 (400)
.|++-+++++++.+++|.++..+.+.
T Consensus 26 ~~~~sci~~f~lav~~e~L~~~r~~~ 51 (144)
T PF04145_consen 26 AYVGSCIGVFLLAVLYEFLKALRRRL 51 (144)
T ss_dssp HHHHHHHHHHHHHHHTTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46656666666778888887655533
No 163
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.83 E-value=1.7e+02 Score=20.08 Aligned_cols=8 Identities=13% Similarity=-0.251 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 015780 357 AALLEAIT 364 (400)
Q Consensus 357 ~i~lei~~ 364 (400)
.+.|.+++
T Consensus 20 ~iGl~IyQ 27 (49)
T PF11044_consen 20 WIGLSIYQ 27 (49)
T ss_pred HHHHHHHH
Confidence 34444433
No 164
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=20.74 E-value=1.5e+02 Score=21.55 Aligned_cols=30 Identities=27% Similarity=0.608 Sum_probs=16.7
Q ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHccc
Q 015780 304 HKYRLYWNIYHWSLGYSVIVLSIINIFEGFD 334 (400)
Q Consensus 304 ~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~ 334 (400)
.|.|+-|.++-..+|.+.++=|++ ..+|++
T Consensus 5 ~kirrdwhyyafa~glifilngvv-gllgfe 34 (70)
T PF10953_consen 5 VKIRRDWHYYAFAIGLIFILNGVV-GLLGFE 34 (70)
T ss_pred hHhhhhhHHHHHHHHHHHHhhchh-hhceec
Confidence 456777777776677655443332 334443
No 165
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=20.58 E-value=6.9e+02 Score=23.17 Aligned_cols=70 Identities=3% Similarity=0.017 Sum_probs=42.2
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhHhHHHHHHHHHHHHHhhhhhcccCCCCCCcccccchhHHHH
Q 015780 207 NTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPAWFYLHVACQASGYIVGVAGWGTGIKLGNDSPGIKYNKHRNIGIALF 286 (400)
Q Consensus 207 ~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~~~~~~~~~~H~~lG~~~~ 286 (400)
...++-|.+|..+.+-++..+....|++ +..-+++..+++.++.++....+.-+ .+....|+.+|+.+=
T Consensus 38 ~~nalgmGlA~t~Vl~~S~~~~sllr~~---------i~~~lRiiv~I~vIA~~V~~ve~~l~--a~~p~Ly~~LGiflp 106 (209)
T PRK09292 38 LETALVMTLAVTFVTAFSNFFISLIRNH---------IPNSVRIIVQMTIIASLVIVVDQVLK--AYAYDISKQLSVFVG 106 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhh
Confidence 3457888888888888887777766653 22345556666666666555443211 122456777776654
Q ss_pred H
Q 015780 287 A 287 (400)
Q Consensus 287 ~ 287 (400)
.
T Consensus 107 L 107 (209)
T PRK09292 107 L 107 (209)
T ss_pred H
Confidence 4
No 166
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=20.53 E-value=5.3e+02 Score=21.84 Aligned_cols=26 Identities=15% Similarity=-0.045 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccCCC
Q 015780 360 LEAITWVIVLKRKNGNSVKHHHSINGAN 387 (400)
Q Consensus 360 lei~~w~~~~~~~~~~~~~~~~~~~~~~ 387 (400)
+.++.|+..--|+|. +-+|....||-
T Consensus 79 ~~lY~kRa~~Ir~R~--~~pyDD~~GP~ 104 (126)
T COG5264 79 LMLYLKRAVNIRQRS--AGPYDDRLGPT 104 (126)
T ss_pred HHHHHHHHHHHHhcC--CCCCccccCCc
Confidence 334445444323332 34577788874
No 167
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=20.33 E-value=5.9e+02 Score=22.27 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHH
Q 015780 343 KRAYIGILIFLGAV 356 (400)
Q Consensus 343 ~~~~~~~~~~~~~~ 356 (400)
...|..++++..++
T Consensus 132 ~lGyS~wL~v~sai 145 (163)
T PF06653_consen 132 SLGYSAWLCVASAI 145 (163)
T ss_pred eeehHHHHHHHHHH
Confidence 35777776666554
No 168
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=20.23 E-value=77 Score=27.00 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.8
Q ss_pred ChhhHHHHHHHHHHHH
Q 015780 1 MVNKAIACALFFSFVA 16 (400)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (400)
|.-+.|||||+++.++
T Consensus 1 MmtcRLLCalLvlaLc 16 (143)
T PF01456_consen 1 MMTCRLLCALLVLALC 16 (143)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6678999999876665
No 169
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=20.20 E-value=5.1e+02 Score=23.42 Aligned_cols=66 Identities=18% Similarity=0.077 Sum_probs=41.3
Q ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHhh------hhccc--------CCcchhhhhHhHHHHHHHHHHHHHhhhhhccc
Q 015780 203 RRRRNTHGVLNAVSWGVLIPMGAMIARYL------KVFKT--------ANPAWFYLHVACQASGYIVGVAGWGTGIKLGN 268 (400)
Q Consensus 203 ~~~~~~Hg~lm~~aw~il~P~gil~aR~~------k~~~~--------~~~~Wf~~H~~~q~~~~~~~i~g~~l~~~~~~ 268 (400)
+.....|..+..++...+.=.++...-|+ |..+. ..+..=++-.-+-.+|+++..+|++.|..-.+
T Consensus 69 ~~~l~iHv~~~~~~ya~~~ia~~~al~~l~~~~~Lk~~~~~~~~~~lp~l~~le~~~~~~~~~gf~~lti~l~~G~~wa~ 148 (214)
T PF01578_consen 69 SPWLYIHVPLALLGYAAFAIAALAALLYLIQERRLKKKKFSRFYQRLPSLETLERLSYRLILIGFILLTIGLITGAIWAK 148 (214)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 46789999999999988887766555555 11100 01111233344445688888888888866443
No 170
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=20.02 E-value=40 Score=27.38 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015780 344 RAYIGILIFLGAVAALLEAITWVIVLK 370 (400)
Q Consensus 344 ~~~~~~~~~~~~~~i~lei~~w~~~~~ 370 (400)
+..++++++++++ +++.++.|+.-.|
T Consensus 63 iili~lls~v~Il-Vily~IyYFVILR 88 (101)
T PF06024_consen 63 IILISLLSFVCIL-VILYAIYYFVILR 88 (101)
T ss_pred chHHHHHHHHHHH-HHHhhheEEEEEe
Confidence 3344444433333 3333444444333
Done!