Query 015780
Match_columns 400
No_of_seqs 226 out of 1078
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:33:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7b_A Cellobiose dehydrogenas 99.6 1.4E-14 4.7E-19 130.1 15.5 135 47-191 22-177 (186)
2 1kqf_C FDH-N gamma, formate de 70.8 5.6 0.00019 35.2 5.5 28 310-337 109-136 (217)
3 4gd3_A NI/Fe-hydrogenase 1 B-t 69.8 8.7 0.0003 34.6 6.6 18 320-337 135-152 (235)
4 2l8s_A Integrin alpha-1; trans 61.2 11 0.00038 26.0 4.1 34 341-374 9-42 (54)
5 2knc_A Integrin alpha-IIB; tra 54.3 21 0.00073 24.6 4.6 32 342-373 13-44 (54)
6 2l2t_A Receptor tyrosine-prote 52.9 20 0.00069 23.7 4.1 11 364-374 30-40 (44)
7 2ks1_B Epidermal growth factor 52.6 17 0.00059 24.0 3.8 30 342-373 11-40 (44)
8 2k21_A Potassium voltage-gated 46.6 36 0.0012 27.7 5.5 41 340-382 49-89 (138)
9 4ev6_A Magnesium transport pro 42.5 29 0.00099 32.9 5.3 39 319-357 287-326 (339)
10 2jwa_A Receptor tyrosine-prote 34.3 96 0.0033 20.4 5.1 18 358-375 24-41 (44)
11 1vf5_A Cytochrome B6; photosyn 30.4 1.4E+02 0.0048 26.5 7.4 58 276-339 84-142 (215)
12 2gsm_A Cytochrome C oxidase su 26.8 3.6E+02 0.012 27.5 10.7 24 211-234 347-370 (566)
13 4gd3_A NI/Fe-hydrogenase 1 B-t 24.5 3.5E+02 0.012 23.6 10.6 59 204-264 17-82 (235)
14 2iub_A CORA, divalent cation t 24.4 27 0.00092 33.5 1.6 38 320-357 312-350 (363)
15 1vry_A Glycine receptor alpha- 23.9 1.4E+02 0.0048 21.9 5.1 14 321-334 10-23 (76)
16 3ayf_A Nitric oxide reductase; 23.5 1.5E+02 0.0051 31.8 7.2 56 204-264 350-412 (800)
17 2nr1_A NR1 M2, M2; receptor, s 23.4 57 0.002 19.0 2.2 16 210-225 10-25 (27)
No 1
>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*
Probab=99.60 E-value=1.4e-14 Score=130.10 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=102.2
Q ss_pred CCCeEEEEEEecCC----CeEEEEEEEecCCCCceEEEEeCCCCCCCCCCcEEEEEECCCCCeEEEEeecCCCCCCC-CC
Q 015780 47 VLNSFLHWNYDQST----NTVDLAFRHTTTSSSRWVAWALNPSGQRMAGSQCLVAFQNSTGRPVAYTTPIGSGSPTL-QP 121 (400)
Q Consensus 47 ~~~~~l~W~~~~~~----~~i~i~~~~~~~~~~gWvA~Gfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~-~d 121 (400)
..++.+.|.+..+. +.-+|.++++.|.+.||+|||+ |.+|.|++|+|+|+++ |++++++|+.+||.+|. .+
T Consensus 22 ~~~~~f~~alP~~~~s~~~s~d~~~qi~~p~~~gW~g~g~---Gg~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~ 97 (186)
T 1d7b_A 22 VHDVTYGFVFPPLATSGAQSTEFIGEVVAPIASKWIGIAL---GGAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYT 97 (186)
T ss_dssp TTTEEEEEEBCCCCSSSCCCCCEEEEEEEETTCCEEEEET---TSSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECC
T ss_pred CCCEEEEEECCCcccCCCCCccEEEEEEccCCCCEEEEec---CCCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccC
Confidence 55688888875322 2357889998888899999999 4469999999999975 88999999999999997 77
Q ss_pred CCcceeeecceEEEeCCEEEEEEEEe----c-CCC----CcceeEEEeeCCCC-------CCCCCCCCCCCCCCccceeE
Q 015780 122 GSLSFQVPNISATLEGNQWTIFATLQ----L-TNN----LLSTNQVWQEGPMN-------GDTPGAHAMSGDNARSVGTI 185 (400)
Q Consensus 122 ~~~~~~l~~~s~~~~~g~~~~~f~~~----l-~~~----~~~~~~IwA~G~~~-------~~~l~~H~~~g~n~~s~~~l 185 (400)
++.+++++..++ ..++++++.|+++ + +.+ ++...+|||+++.. +..+.+|+.+ +.+.+
T Consensus 98 ~~~~~~lL~gs~-vn~t~~~~~f~C~~C~~w~~~g~~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~~-----G~~~~ 171 (186)
T 1d7b_A 98 GTATLTTLPETT-INSTHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDF-----GFFGI 171 (186)
T ss_dssp SSCEEEECTTCE-ECSSEEEEEEEEETTTBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEE-----EEEEE
T ss_pred CCceEEEccccc-EeCCEEEEEEEeCCCcccCCCCccccCCCCeEEEEECCCCCCCCCCCcccchhhhCc-----ceEEE
Confidence 777888887553 4678887766664 4 222 12238999997642 3578899864 56899
Q ss_pred ecccCc
Q 015780 186 DFRTGQ 191 (400)
Q Consensus 186 dl~~g~ 191 (400)
||.+..
T Consensus 172 dL~~a~ 177 (186)
T 1d7b_A 172 DYSTAH 177 (186)
T ss_dssp EGGGCB
T ss_pred Eccccc
Confidence 998543
No 2
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Probab=70.82 E-value=5.6 Score=35.24 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=22.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHcccccC
Q 015780 310 WNIYHWSLGYSVIVLSIINIFEGFDILD 337 (400)
Q Consensus 310 ~~~~H~~~G~~~~~lg~~ni~~Gl~l~~ 337 (400)
+|...+..=.+++++.++.+.+|+.++.
T Consensus 109 ~n~~~~~~~~~l~~l~~~~~~TG~~~~~ 136 (217)
T 1kqf_C 109 YNAGQKMMFWSIMSMIFVLLVTGVIIWR 136 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667766667788888999999988775
No 3
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=69.82 E-value=8.7 Score=34.55 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcccccC
Q 015780 320 SVIVLSIINIFEGFDILD 337 (400)
Q Consensus 320 ~~~~lg~~ni~~Gl~l~~ 337 (400)
+++++.++.+.+|+.++.
T Consensus 135 ~l~~ll~~~~ltG~~~~~ 152 (235)
T 4gd3_A 135 GYFLMSVFMIITGFALYS 152 (235)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 666677777777776543
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=61.16 E-value=11 Score=26.05 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015780 341 KWKRAYIGILIFLGAVAALLEAITWVIVLKRKNG 374 (400)
Q Consensus 341 ~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~~~ 374 (400)
-|+++-.++.+++.+..+++-..++-.++|+|+.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~ 42 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKIGFFKRPLKK 42 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcc
Confidence 4555555555544444444444444555444443
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=54.31 E-value=21 Score=24.63 Aligned_cols=32 Identities=9% Similarity=-0.078 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015780 342 WKRAYIGILIFLGAVAALLEAITWVIVLKRKN 373 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~~ 373 (400)
|+++-.++.+++.+..+++-..++-.++|+|+
T Consensus 13 wiIi~svl~GLllL~li~~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCCC
Confidence 44444444444444334444444444444443
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=52.94 E-value=20 Score=23.66 Aligned_cols=11 Identities=18% Similarity=-0.007 Sum_probs=5.1
Q ss_pred HHHHHHHhcCC
Q 015780 364 TWVIVLKRKNG 374 (400)
Q Consensus 364 ~w~~~~~~~~~ 374 (400)
.|+.+||||+.
T Consensus 30 ~~~~~RRRr~~ 40 (44)
T 2l2t_A 30 FAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHTTCSS
T ss_pred HHHHhhhhhhh
Confidence 35555444443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=52.57 E-value=17 Score=23.96 Aligned_cols=30 Identities=10% Similarity=-0.204 Sum_probs=12.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015780 342 WKRAYIGILIFLGAVAALLEAITWVIVLKRKN 373 (400)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~~ 373 (400)
..++-.++.++++++.++ ...|+..||||+
T Consensus 11 ~~IA~gVVgGv~~~~ii~--~~~~~~~RRr~~ 40 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVA--LGIGLFMRRRHI 40 (44)
T ss_dssp SSSTHHHHHHHHHHHHHH--HHHHHHHHTTTC
T ss_pred ceEEeehhHHHHHHHHHH--HHHHHHhhhhHh
Confidence 334444444444433333 233444544443
No 8
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=46.60 E-value=36 Score=27.74 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=24.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 015780 340 KKWKRAYIGILIFLGAVAALLEAITWVIVLKRKNGNSVKHHHS 382 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~lei~~w~~~~~~~~~~~~~~~~~ 382 (400)
....++|+.++..++.++++--++.+.+.+|+ +.+-|+|+.
T Consensus 49 ~~~~ylYIL~vmgffgff~~GImLsYiRSKk~--E~s~DPy~~ 89 (138)
T 2k21_A 49 GKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL--EHSNDPFNV 89 (138)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCTTTT
T ss_pred CCceeehHHHHHHHHHHHHHHHHHHHhHhhhc--cccCCcHHH
Confidence 44567788777766666555555666666544 333455544
No 9
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=42.51 E-value=29 Score=32.88 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcccccC-CCCcchhHHHHHHHHHHHHH
Q 015780 319 YSVIVLSIINIFEGFDILD-PEKKWKRAYIGILIFLGAVA 357 (400)
Q Consensus 319 ~~~~~lg~~ni~~Gl~l~~-~~~~~~~~~~~~~~~~~~~~ 357 (400)
.+.+.+.+++.+.|+...+ +...|..+|.++++++++++
T Consensus 287 ~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~ 326 (339)
T 4ev6_A 287 TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVII 326 (339)
T ss_dssp HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHH
Confidence 3344567778888888764 44567777766555554443
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.34 E-value=96 Score=20.37 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 015780 358 ALLEAITWVIVLKRKNGN 375 (400)
Q Consensus 358 i~lei~~w~~~~~~~~~~ 375 (400)
+++-.+.+..+.|||+.+
T Consensus 24 ~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 24 VVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhheehhhhh
Confidence 334445688888777654
No 11
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=30.42 E-value=1.4e+02 Score=26.51 Aligned_cols=58 Identities=17% Similarity=0.242 Sum_probs=37.0
Q ss_pred ccccchhHHHHHHHHHHHhheeec-cCCCCCCcccchhhhHHHHHHHHHHHHHHHHHcccccCCC
Q 015780 276 NKHRNIGIALFAIGTLQMFAMLLR-PKPDHKYRLYWNIYHWSLGYSVIVLSIINIFEGFDILDPE 339 (400)
Q Consensus 276 ~~H~~lG~~~~~l~~~Q~l~~~~r-p~~~~~~r~~~~~~H~~~G~~~~~lg~~ni~~Gl~l~~~~ 339 (400)
..|..-.-..++++.+.+.-++.. ..+. + | ..=+..|.+++++.+++.++|..+...+
T Consensus 84 ~~H~~gAs~ffi~~ylHi~Rglyygsy~~-p-~----~~~W~~Gv~l~~l~m~~aF~GYvLPwgq 142 (215)
T 1vf5_A 84 SIHRWSASMMVLMMILHVFRVYLTGGFKK-P-R----ELTWISGVILAVITVSFGVTGYSLPWDQ 142 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSS-S-C----SHHHHHHHHHHHHHHHHHHHHTTTTCBH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhccc-C-C----CceeHhHHHHHHHHHHHHHcccccCCCc
Confidence 567777777777777777655532 1111 1 1 1235788888888888888888776443
No 12
>2gsm_A Cytochrome C oxidase subunit 1; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: f.24.1.1 PDB: 1m56_A* 3dtu_A* 3fye_A* 3fyi_A* 1m57_A* 3oma_A* 3om3_A* 3omi_A* 3omn_A* 3hb3_A* 1ar1_A* 3ehb_A* 1qle_A*
Probab=26.80 E-value=3.6e+02 Score=27.48 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhc
Q 015780 211 VLNAVSWGVLIPMGAMIARYLKVF 234 (400)
Q Consensus 211 ~lm~~aw~il~P~gil~aR~~k~~ 234 (400)
..+.....+.+|.++-+.-.+-..
T Consensus 347 ~f~~~TmiiavPtgikvFnwl~Tl 370 (566)
T 2gsm_A 347 YFMMATMVIAVPTGIKIFSWIATM 370 (566)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677899988665444443
No 13
>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}
Probab=24.50 E-value=3.5e+02 Score=23.58 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=32.3
Q ss_pred chhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCcc------h-hhhhHhHHHHHHHHHHHHHhhhh
Q 015780 204 RRRNTHGVLNAVSWGVLIPMGAMIARYLKVFKTANPA------W-FYLHVACQASGYIVGVAGWGTGI 264 (400)
Q Consensus 204 ~~~~~Hg~lm~~aw~il~P~gil~aR~~k~~~~~~~~------W-f~~H~~~q~~~~~~~i~g~~l~~ 264 (400)
..+..| |++++++.+++..|..+.......+ +.+. | ..+|..+-.+-+++.+.=++.++
T Consensus 17 ~~R~~H-W~~a~~ii~l~~tG~~~~~~~~~~~-g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~ 82 (235)
T 4gd3_A 17 PVRIWH-WLTVLCMAVLMVTGYFIGKPLPSVS-GEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAF 82 (235)
T ss_dssp CTTHHH-HHHHHHHHHHHHHHHHHHSCCCCCC-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCcccccc-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566 6888889999888876543211000 1111 1 24798877655555444334443
No 14
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.35 E-value=27 Score=33.51 Aligned_cols=38 Identities=29% Similarity=0.529 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcccccC-CCCcchhHHHHHHHHHHHHH
Q 015780 320 SVIVLSIINIFEGFDILD-PEKKWKRAYIGILIFLGAVA 357 (400)
Q Consensus 320 ~~~~lg~~ni~~Gl~l~~-~~~~~~~~~~~~~~~~~~~~ 357 (400)
+.+.+.+++.+.|+...+ +...|..+|.++++++++++
T Consensus 312 IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~ 350 (363)
T 2iub_A 312 IFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIA 350 (363)
T ss_dssp HHHHHHHHTTSCC--------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHH
Confidence 333444555555665543 33457777765555554433
No 15
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=23.90 E-value=1.4e+02 Score=21.92 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHccc
Q 015780 321 VIVLSIINIFEGFD 334 (400)
Q Consensus 321 ~~~lg~~ni~~Gl~ 334 (400)
+-+|.+.+...+..
T Consensus 10 ttvLtmtt~~~~~~ 23 (76)
T 1vry_A 10 TTVLTLTTQSSGSR 23 (76)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCcc
Confidence 34455666666654
No 16
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=23.51 E-value=1.5e+02 Score=31.76 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=34.6
Q ss_pred chhhcchhHHHHHHHHHHHHHH---HHHHhhhhcccCCcc----hhhhhHhHHHHHHHHHHHHHhhhh
Q 015780 204 RRRNTHGVLNAVSWGVLIPMGA---MIARYLKVFKTANPA----WFYLHVACQASGYIVGVAGWGTGI 264 (400)
Q Consensus 204 ~~~~~Hg~lm~~aw~il~P~gi---l~aR~~k~~~~~~~~----Wf~~H~~~q~~~~~~~i~g~~l~~ 264 (400)
.++.+||.+|.+ |....-+|. ++-|..+. +|. .-.+...+-.++.+++++++.+|.
T Consensus 350 ~lrT~Hg~~mIf-~~~~~~~g~~~ylvP~~~g~----dp~~~~~L~~~~fwl~~~g~vl~~~s~~~G~ 412 (800)
T 3ayf_A 350 IAKGYHLQLAIF-WIATAWLGMGIFIAPLVGGQ----EPKKQGLLVDLLFWALVVLVGGSMIGQWLGV 412 (800)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTS----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC----CCccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567899999999 887665553 33343321 133 334555566667777777776654
No 17
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=23.43 E-value=57 Score=19.02 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 015780 210 GVLNAVSWGVLIPMGA 225 (400)
Q Consensus 210 g~lm~~aw~il~P~gi 225 (400)
..-|..+|++|+-.|+
T Consensus 10 ~aa~wF~WGvllnsgi 25 (27)
T 2nr1_A 10 SSAMWFSWGVLLNSGI 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhHhheeccc
Confidence 4568899999998776
Done!