BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015782
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 171/336 (50%), Gaps = 35/336 (10%)
Query: 20 ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYVS 76
+ V S+ + I +S + +G+ I S F+ G +W + P G + E
Sbjct: 3 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 61
Query: 77 VFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 136
+ ++ ++VRA F+ ++L+ G+ +++ES +G WG+K+F R
Sbjct: 62 YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 113
Query: 137 RAML--ETSDYLKDDCLKINCTVGVVVSAIDCS---RLHSIQVPESDIGAHFGMLLDNAE 191
R L E + L DD L + C V VV +++ S ++ ++VPE + G L +N+
Sbjct: 114 RGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSR 173
Query: 192 SSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEII-ISDLEPKVFKAMLHFI 250
+D VAG++F AHK +LAARSP+F + F E+EE K+ + I+D+EP+VFK M+ FI
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFI 233
Query: 251 YRDTLTEDVDVDVATPSSSCMSSVSDXXXXXXXXXXDRYGLERLRLMCGSHLCKDISVNS 310
Y T + + ++D D+Y LERL++MC LC ++SV +
Sbjct: 234 Y-------------TGKAPNLDKMAD----DLLAAADKYALERLKVMCEDALCSNLSVEN 276
Query: 311 VAKILSLADEHHATELKAVCLRFAAENLAAVMRSDG 346
A+IL LAD H A +LK + F + V+ + G
Sbjct: 277 AAEILILADLHSADQLKTQAVDFINYHATDVLETSG 312
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 107 bits (268), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 18/157 (11%)
Query: 172 IQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQ 231
++VPE + G L +N+ +D VAG++F AHK +LAARSP+F + F E+EE K+
Sbjct: 5 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKK 64
Query: 232 EII-ISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDXXXXXXXXXXDRYG 290
+ I+D+EP+VFK M+ FIY T + + ++D D+Y
Sbjct: 65 NRVEINDVEPEVFKEMMCFIY-------------TGKAPNLDKMAD----DLLAAADKYA 107
Query: 291 LERLRLMCGSHLCKDISVNSVAKILSLADEHHATELK 327
LERL++MC LC ++SV + A+IL LAD H A +LK
Sbjct: 108 LERLKVMCEDALCSNLSVENAAEILILADLHSADQLK 144
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 170 HSIQVPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED 229
+ ++VPE + G L +N+ +D VAG++F AHK +LAARSP+F + F E EE
Sbjct: 12 NXVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEES 71
Query: 230 KQEII-ISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDXXXXXXXXXXDR 288
K+ + I+D+EP+VFK FIY P+ + D+
Sbjct: 72 KKNRVEINDVEPEVFKEXXCFIYTGK----------APNLDKXADDL-------LAAADK 114
Query: 289 YGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSDG 346
Y LERL++ C LC ++SV + A+IL LAD H A +LK + F + V+ + G
Sbjct: 115 YALERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG 172
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 187 LDNAESSDITFDV----AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKV 242
+N +D+ F V A PAHK VLA S +F + F+ +L E K EI I D+EP
Sbjct: 3 FNNELXADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAXFYGDLAEVKSEIHIPDVEPAA 62
Query: 243 FKAMLHFIYRDTLTEDVDVDVAT 265
F +L + Y D + + D +AT
Sbjct: 63 FLILLKYXYSDEIDLEADTVLAT 85
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type
Poz Protein
Length = 159
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 20 ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYVS 76
+ V S+ + I +S + +G+ I S F+ G +W + P G + E
Sbjct: 8 KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 66
Query: 77 VFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 136
+ ++ ++VRA F+ ++L+ G+ +++ES +G WG+K+F R
Sbjct: 67 YLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIR 118
Query: 137 RAML--ETSDYLKDDCLKINCTVGVVVSAIDCS 167
R L E + L DD L + C V VV +++ S
Sbjct: 119 RDFLLDEANGLLPDDKLTLFCEVSVVQDSVNIS 151
>pdb|3HQH|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep1
pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQL|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin
Ligases:spopmathx-Pucsbc1_pep2
pdb|3HQM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HQM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Cisbc2
pdb|3HSV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
pdb|3HSV|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmathx-Macroh2asbcpep2
Length = 145
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 20 ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYVS 76
+ V S+ + I +S + +G+ I S F+ G +W + P G + E
Sbjct: 7 KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65
Query: 77 VFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 136
+ ++ ++VRA F+ ++L+ G+ +++ES +G WG+K+F R
Sbjct: 66 YLLLVSCPKSEVRAKFKFSILNAKGEE--------TKAMESQRAYRFVQGKDWGFKKFIR 117
Query: 137 RAML--ETSDYLKDDCLKINCTVGVV 160
R L E + L DD L + C V VV
Sbjct: 118 RGFLLDEANGLLPDDKLTLFCEVSVV 143
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-
Macroh2asbcpep1
pdb|3IVQ|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVQ|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Cisbc2
pdb|3IVV|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopmath-Pucsbc1_pep1
Length = 145
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 14/146 (9%)
Query: 20 ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYVS 76
+ V S+ + I +S + +G+ I S F+ G +W + P G + E
Sbjct: 7 KVVKFSYMWTINNFSFCREE-MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSL 65
Query: 77 VFIALANEGTDVRALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFR 136
+ ++ ++VRA F+ ++L+ G+ +++ES +G WG+K+F R
Sbjct: 66 YLLLVSCPKSEVRAKFKFSILNAKGEE--------TKAMESQRAYRFVQGKDWGFKKFIR 117
Query: 137 RAML--ETSDYLKDDCLKINCTVGVV 160
R L E + L DD L + C V VV
Sbjct: 118 RDFLLDEANGLLPDDKLTLFCEVSVV 143
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 177 SDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIIS 236
SD+ + L +D+ V+ E+F AHK VL A S +F S F D+L K+ + +
Sbjct: 14 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL---KRNLSVI 70
Query: 237 DLEPKV----FKAMLHFIYRDTL 255
+L+P++ F +L F+Y L
Sbjct: 71 NLDPEINPEGFNILLDFMYTSRL 93
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 177 SDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIII- 235
SD+ + L +D+ V+ E+F AHK VL A S +F S F D+L+ + I +
Sbjct: 17 SDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLD 76
Query: 236 SDLEPKVFKAMLHFIYRDTL 255
++ P+ F +L F+Y L
Sbjct: 77 PEINPEGFCILLDFMYTSRL 96
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D+ V ++F AH+ VLA S +F F + Q + L PK F+ +L + Y
Sbjct: 30 DVVIMVDSQEFHAHRTVLACTSKMFEILF----HRNSQHYTLDFLSPKTFQQILEYAYTA 85
Query: 254 TL---TEDVD 260
TL ED+D
Sbjct: 86 TLQAKAEDLD 95
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D+ V ++F AH+ VLA S +F F + Q + L PK F+ +L + Y
Sbjct: 29 DVVIMVDSQEFHAHRTVLACTSKMFEILF----HRNSQHYTLDFLSPKTFQQILEYAYTA 84
Query: 254 TL---TEDVD 260
TL ED+D
Sbjct: 85 TLQAKAEDLD 94
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEII-ISDLEPKVFKAMLHFIYR 252
D+ V G +FP H+ VLAA S F+ F D+Q + I + + A++ F Y
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 96
Query: 253 DTLT 256
TLT
Sbjct: 97 ATLT 100
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEII-ISDLEPKVFKAMLHFIYR 252
D+ V G +FP H+ VLAA S F+ F D+Q + I + + A++ F Y
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYT 86
Query: 253 DTLT 256
TLT
Sbjct: 87 ATLT 90
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 36.2 bits (82), Expect = 0.031, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D++ V G F AH+ VLAA S FR F + + + + ++P+ F+ +L F Y
Sbjct: 35 DVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVE--LPAAVQPQSFQQILSFCYTG 92
Query: 254 TLTEDV 259
L+ +V
Sbjct: 93 RLSMNV 98
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D+T V G++F AH+ VLAA S F S+ + + + + ++ K F+ ++ F Y
Sbjct: 31 DVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTA 90
Query: 254 TLT---EDVD 260
L E+VD
Sbjct: 91 KLILSKENVD 100
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D+T V G++F AH+ VLAA S F S+ + + + + ++ K F+ ++ F Y
Sbjct: 38 DVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTA 97
Query: 254 TL 255
L
Sbjct: 98 KL 99
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 32.7 bits (73), Expect = 0.36, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D TF V G F AHK VLAA S F+ F D ++D + IS+ +L F+Y
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVD--QKDVVHLDISNAAG--LGQVLEFMYTA 84
Query: 254 TLT---EDVD 260
L+ E+VD
Sbjct: 85 KLSLSPENVD 94
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D TF V G F AHK VLAA S F+ F D ++D + IS+ +L F+Y
Sbjct: 27 DCTFVVDGVHFKAHKAVLAACSEYFKMLFVD--QKDVVHLDISNAAG--LGQVLEFMYTA 82
Query: 254 TLT---EDVD 260
L+ E+VD
Sbjct: 83 KLSLSPENVD 92
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D V ++FPAH LVLA S +L Q + + P F +L+F+Y +
Sbjct: 32 DTLITVGSQEFPAHSLVLAGVS--------QQLGRRGQWALGEGISPSTFAQLLNFVYGE 83
Query: 254 TL 255
++
Sbjct: 84 SV 85
>pdb|1LB5|A Chain A, Traf6-Rank Complex
pdb|1LB6|A Chain A, Traf6-Cd40 Complex
Length = 160
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 45 IASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTD------VRALFELTL 96
I S F G GY+ + + + + Y+S+F+ D + LT+
Sbjct: 29 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 88
Query: 97 LDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM-------WGYKRFFRRAMLETSDYLKDD 149
LDQS + V + + +++ P L ++ +GY F L ++KDD
Sbjct: 89 LDQS---EAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 145
Query: 150 CLKINCTV 157
L + C V
Sbjct: 146 TLLVRCEV 153
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIY 251
D+T V KF AHK +L+A S F F Q + +S + ++F +L++IY
Sbjct: 35 DVTVIVEDRKFRAHKNILSASSTYFHQLF----SVAGQVVELSFIRAEIFAEILNYIY 88
>pdb|1LB4|A Chain A, Traf6 Apo Structure
Length = 159
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 45 IASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANEGTD------VRALFELTL 96
I S F G GY+ + + + + Y+S+F+ D + LT+
Sbjct: 28 IHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTI 87
Query: 97 LDQSGKGKHKVHSHFDRSLESGPYTLKYRGSM-------WGYKRFFRRAMLETSDYLKDD 149
LDQS + V + + +++ P L ++ +GY F L ++KDD
Sbjct: 88 LDQS---EAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDD 144
Query: 150 CLKINCTV 157
L + C V
Sbjct: 145 TLLVRCEV 152
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIY 251
D+T V KF AHK +L+A S F F Q + +S + ++F +L++IY
Sbjct: 33 DVTVIVEDRKFRAHKNILSASSTYFHQLF----SVAGQVVELSFIRAEIFAEILNYIY 86
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 27/164 (16%)
Query: 194 DITF---DVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIII-------SDLEPKVF 243
DIT G +F AH+ VLAA + F + E + + EP
Sbjct: 52 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTV 111
Query: 244 KAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDXXXXXXXXXXDRYGLERLRLMCGSHLC 303
+A++ ++Y + VS DR+ L RL+ CG L
Sbjct: 112 EAVIEYMYTGRI-----------------RVSTGSVHEVLELADRFLLIRLKEFCGEFLK 154
Query: 304 KDISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSDGF 347
K + +++ I SLA + ++L N V++ + F
Sbjct: 155 KKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEF 198
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 188 DNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAML 247
+ + D T DV G F AH VLA S F+S + D +++ ++F +L
Sbjct: 20 EKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD---GSGGSVVLPAGFAEIFGLLL 76
Query: 248 HFIYRDTLT 256
F Y L
Sbjct: 77 DFFYTGHLA 85
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 27/164 (16%)
Query: 194 DITF---DVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDL-------EPKVF 243
DIT G +F AH+ VLAA + F + E + + EP
Sbjct: 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEXRKWSSEPGPEPDTV 93
Query: 244 KAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDXXXXXXXXXXDRYGLERLRLMCGSHLC 303
+A++ + Y + VS DR+ L RL+ CG L
Sbjct: 94 EAVIEYXYTGRI-----------------RVSTGSVHEVLELADRFLLIRLKEFCGEFLK 136
Query: 304 KDISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSDGF 347
K + +++ I SLA + ++L N V++ + F
Sbjct: 137 KKLHLSNCVAIHSLAHXYTLSQLALKAADXIRRNFHKVIQDEEF 180
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253
D+T V ++F AH+ VLAA S F + + D + ++ + F +L F Y
Sbjct: 34 DVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTA 93
Query: 254 TL 255
L
Sbjct: 94 KL 95
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 201 GEKFPAHKLVLAARSPIFRSKF-FDELEED--KQEIIISDLEPKVFKAMLHFIY--RDTL 255
GE+ P K +LAA SP R+K ++ ++D +I + + V + +L +I+ + L
Sbjct: 56 GEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRL 115
Query: 256 TEDVDVDVA 264
ED DV
Sbjct: 116 NEDTIQDVV 124
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 201 GEKFPAHKLVLAARSPIFRSKF-FDELEED--KQEIIISDLEPKVFKAMLHFIY--RDTL 255
GE+ P K +LAA SP R+K ++ ++D +I + + V + +L +I+ + L
Sbjct: 40 GEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXVXREILDYIFSGQIRL 99
Query: 256 TEDVDVDV 263
ED DV
Sbjct: 100 NEDTIQDV 107
>pdb|4GJH|A Chain A, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|B Chain B, Crystal Structure Of The Traf Domain Of Traf5
pdb|4GJH|C Chain C, Crystal Structure Of The Traf Domain Of Traf5
Length = 178
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 89 RALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYR---GSM---WGYKRFFRRAMLET 142
R L LLDQSGK H V + ++ P + ++ G M G RF + LE
Sbjct: 99 RQRVTLMLLDQSGKKNHIVE-----TFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLEN 153
Query: 143 SD--YLKDDCLKINCTV 157
S Y+KDD L + V
Sbjct: 154 SKNTYIKDDTLFLKVAV 170
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 322 HATELKAVCLRFAAENLAAVMRSDGFEYLKENCPSLQSELLKTVAGCEEDCSSGGK 377
+ TE + + + +E+LA ++ +K P +QS + KTV E + S GK
Sbjct: 267 NTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGK 322
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 201 GEKFPAHKLVLAARSPIFRSKF-FDELEED--KQEIIISDLEPKVFKAMLHFIY--RDTL 255
GE+ P K +LAA SP R+K ++ ++D +I + + V + +L +I+ + L
Sbjct: 40 GEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXVXREILDYIFSGQIRL 99
Query: 256 TEDVDVDVA 264
ED DV
Sbjct: 100 NEDTIQDVV 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,374,693
Number of Sequences: 62578
Number of extensions: 457150
Number of successful extensions: 1024
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 36
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)