Query 015782
Match_columns 400
No_of_seqs 345 out of 2455
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 5.5E-27 1.2E-31 237.0 15.4 157 176-351 9-168 (557)
2 KOG4350 Uncharacterized conser 99.9 6.2E-27 1.3E-31 213.3 10.5 170 177-363 29-199 (620)
3 PHA03098 kelch-like protein; P 99.9 3.6E-26 7.8E-31 232.0 14.6 173 188-389 5-179 (534)
4 PHA02790 Kelch-like protein; P 99.9 5.8E-26 1.3E-30 226.3 13.6 154 180-351 10-167 (480)
5 KOG4441 Proteins containing BT 99.9 6E-26 1.3E-30 228.7 13.8 159 176-351 20-179 (571)
6 cd03774 MATH_SPOP Speckle-type 99.9 8E-23 1.7E-27 169.9 14.2 131 21-161 2-138 (139)
7 cd03780 MATH_TRAF5 Tumor Necro 99.9 5.3E-23 1.2E-27 170.7 13.0 131 24-158 1-148 (148)
8 cd03772 MATH_HAUSP Herpesvirus 99.9 1.2E-22 2.6E-27 168.4 13.8 126 23-161 2-134 (137)
9 cd03777 MATH_TRAF3 Tumor Necro 99.9 1.6E-22 3.5E-27 173.8 13.9 135 21-159 36-185 (186)
10 cd03773 MATH_TRIM37 Tripartite 99.9 4.6E-22 1E-26 164.0 12.9 125 22-158 3-130 (132)
11 cd03779 MATH_TRAF1 Tumor Necro 99.9 3.3E-22 7.1E-27 165.1 12.0 130 24-158 1-147 (147)
12 cd03781 MATH_TRAF4 Tumor Necro 99.9 4.1E-22 8.9E-27 168.0 12.5 132 24-158 1-154 (154)
13 cd03775 MATH_Ubp21p Ubiquitin- 99.9 7E-22 1.5E-26 163.0 13.1 118 25-158 2-134 (134)
14 cd00270 MATH_TRAF_C Tumor Necr 99.9 3.1E-22 6.7E-27 168.6 10.9 132 24-158 1-149 (149)
15 cd03776 MATH_TRAF6 Tumor Necro 99.9 3.3E-22 7.1E-27 167.7 10.7 131 24-158 1-147 (147)
16 cd03771 MATH_Meprin Meprin fam 99.9 2.1E-21 4.6E-26 163.2 12.9 134 23-158 1-167 (167)
17 cd03778 MATH_TRAF2 Tumor Necro 99.8 9.3E-20 2E-24 152.0 12.2 135 21-158 16-164 (164)
18 KOG2075 Topoisomerase TOP1-int 99.8 1.2E-19 2.7E-24 169.7 13.8 176 170-363 92-274 (521)
19 KOG4591 Uncharacterized conser 99.8 8.2E-20 1.8E-24 151.9 10.6 167 177-364 51-220 (280)
20 cd00121 MATH MATH (meprin and 99.8 1.4E-18 3.1E-23 141.4 13.8 120 24-158 1-126 (126)
21 PF00651 BTB: BTB/POZ domain; 99.8 2.1E-19 4.6E-24 143.4 8.5 106 183-305 1-110 (111)
22 cd03783 MATH_Meprin_Alpha Mepr 99.7 2.3E-17 5E-22 136.9 10.8 136 23-158 1-167 (167)
23 KOG4682 Uncharacterized conser 99.7 4.6E-17 1E-21 149.2 12.9 163 183-370 60-227 (488)
24 PF00917 MATH: MATH domain; I 99.7 3E-17 6.5E-22 132.6 10.4 113 30-159 1-119 (119)
25 cd03782 MATH_Meprin_Beta Mepri 99.7 2.3E-16 5E-21 130.1 11.4 134 23-158 1-167 (167)
26 KOG0783 Uncharacterized conser 99.7 1.3E-16 2.8E-21 157.4 10.1 165 191-367 709-876 (1267)
27 smart00225 BTB Broad-Complex, 99.7 2.5E-16 5.3E-21 120.0 7.8 89 194-299 1-90 (90)
28 smart00061 MATH meprin and TRA 99.5 4.2E-14 9.2E-19 109.1 8.7 89 26-135 2-95 (95)
29 KOG1987 Speckle-type POZ prote 99.4 1.6E-12 3.4E-17 122.3 14.4 244 28-363 8-259 (297)
30 COG5077 Ubiquitin carboxyl-ter 99.3 4.6E-12 1E-16 124.7 7.6 126 20-162 35-173 (1089)
31 KOG0783 Uncharacterized conser 98.9 2.3E-09 5E-14 107.0 8.8 124 174-300 536-683 (1267)
32 KOG0511 Ankyrin repeat protein 98.6 1.6E-07 3.5E-12 86.4 7.2 131 202-350 301-442 (516)
33 KOG2838 Uncharacterized conser 98.5 8.7E-08 1.9E-12 84.4 4.7 105 174-292 112-219 (401)
34 KOG2716 Polymerase delta-inter 98.4 2.5E-06 5.5E-11 75.1 9.4 95 195-305 7-104 (230)
35 KOG2838 Uncharacterized conser 98.3 8.5E-07 1.8E-11 78.3 5.1 138 177-314 220-396 (401)
36 PF02214 BTB_2: BTB/POZ domain 98.0 1.6E-05 3.4E-10 61.0 5.9 87 195-298 1-94 (94)
37 KOG3473 RNA polymerase II tran 97.5 0.00077 1.7E-08 50.1 8.2 84 195-291 19-112 (112)
38 PF11822 DUF3342: Domain of un 97.0 0.00084 1.8E-08 61.9 4.8 87 202-305 14-103 (317)
39 PF07707 BACK: BTB And C-termi 97.0 0.0012 2.7E-08 51.1 5.1 70 311-389 1-70 (103)
40 KOG1863 Ubiquitin carboxyl-ter 96.9 0.0012 2.5E-08 72.5 5.6 168 23-224 26-201 (1093)
41 KOG2714 SETA binding protein S 96.6 0.0078 1.7E-07 57.2 7.7 87 194-296 12-102 (465)
42 KOG1665 AFH1-interacting prote 96.5 0.012 2.6E-07 51.1 7.7 92 194-301 10-106 (302)
43 smart00512 Skp1 Found in Skp1 96.5 0.012 2.6E-07 45.9 7.2 59 195-254 4-65 (104)
44 smart00875 BACK BTB And C-term 96.5 0.007 1.5E-07 46.4 5.7 69 312-389 2-70 (101)
45 KOG0297 TNF receptor-associate 96.4 0.0027 5.8E-08 61.8 3.2 78 21-99 277-365 (391)
46 PF03931 Skp1_POZ: Skp1 family 96.3 0.02 4.2E-07 40.0 6.5 56 195-252 3-59 (62)
47 KOG0511 Ankyrin repeat protein 96.1 0.011 2.4E-07 55.2 5.4 101 181-299 135-239 (516)
48 KOG1778 CREB binding protein/P 95.6 0.0089 1.9E-07 55.8 3.0 148 194-357 28-177 (319)
49 KOG2715 Uncharacterized conser 95.3 0.084 1.8E-06 43.8 7.2 96 193-305 21-121 (210)
50 KOG1724 SCF ubiquitin ligase, 94.9 0.075 1.6E-06 44.7 6.2 114 200-314 13-138 (162)
51 COG5201 SKP1 SCF ubiquitin lig 93.2 0.62 1.3E-05 36.9 7.6 111 194-306 3-122 (158)
52 PF01466 Skp1: Skp1 family, di 88.8 0.69 1.5E-05 33.8 3.9 46 277-322 14-62 (78)
53 KOG2075 Topoisomerase TOP1-int 87.7 1.2 2.5E-05 43.6 5.7 61 306-369 185-250 (521)
54 KOG2723 Uncharacterized conser 84.8 3.2 7E-05 36.7 6.6 95 192-302 7-106 (221)
55 PF07707 BACK: BTB And C-termi 79.7 4.1 8.9E-05 31.0 4.9 59 280-338 2-74 (103)
56 KOG3840 Uncharaterized conserv 74.9 7.6 0.00016 35.8 5.6 86 191-292 94-185 (438)
57 PF11822 DUF3342: Domain of un 68.0 3 6.5E-05 38.9 1.6 41 305-345 71-111 (317)
58 PF00651 BTB: BTB/POZ domain; 64.6 9.4 0.0002 29.3 3.7 31 307-337 80-110 (111)
59 PHA03098 kelch-like protein; P 49.4 50 0.0011 33.6 7.0 32 306-337 73-104 (534)
60 PF09593 Pathogen_betaC1: Beta 42.1 50 0.0011 26.1 4.3 60 200-260 20-82 (117)
61 TIGR02425 decarb_PcaC 4-carbox 34.9 2.3E+02 0.0051 22.5 11.1 77 234-322 27-103 (123)
62 smart00875 BACK BTB And C-term 33.6 43 0.00094 24.8 2.8 26 280-305 2-27 (101)
63 PF05570 DUF765: Circovirus pr 32.3 27 0.00057 19.3 0.9 11 1-11 1-11 (29)
64 PHA02713 hypothetical protein; 32.0 55 0.0012 33.7 4.0 33 305-337 90-122 (557)
65 PHA02790 Kelch-like protein; P 30.8 54 0.0012 33.0 3.7 28 279-306 125-152 (480)
66 KOG4350 Uncharacterized conser 27.5 46 0.001 32.2 2.3 78 214-305 92-176 (620)
67 PF02519 Auxin_inducible: Auxi 26.5 1.5E+02 0.0032 22.8 4.6 54 194-250 40-99 (100)
68 KOG4682 Uncharacterized conser 24.5 58 0.0013 31.6 2.4 27 279-305 175-201 (488)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=5.5e-27 Score=236.97 Aligned_cols=157 Identities=18% Similarity=0.284 Sum_probs=146.8
Q ss_pred CCcHHHHHHHhhhCCCCCcEEEEeC-CeEEeeeehhhhccCHHHHHhhcCccccc--cceEEEcCCCHHHHHHHhhhhcc
Q 015782 176 ESDIGAHFGMLLDNAESSDITFDVA-GEKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIISDLEPKVFKAMLHFIYR 252 (400)
Q Consensus 176 ~~~~~~~l~~l~~~~~~sDv~l~v~-~~~f~~hk~iLa~~S~~F~~~f~~~~~e~--~~~i~l~~~~~~~f~~~L~~iYt 252 (400)
...+.+.|.+|+.++.++||+|.++ |++|+|||.|||++|+||++||.++++|+ +.+|.|.++++++|+.+|+|+||
T Consensus 9 ~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt 88 (557)
T PHA02713 9 NRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYN 88 (557)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcC
Confidence 3567799999999999999999998 89999999999999999999999999975 78999999999999999999999
Q ss_pred CCCCCCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHH
Q 015782 253 DTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLR 332 (400)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~ 332 (400)
|.+ +.+ | +.+||.+|++|+++.|++.|+++|.+.++++||+.++.+|..+.+..|.+.|.+
T Consensus 89 ~~i--~~~-------n----------v~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~ 149 (557)
T PHA02713 89 RHI--SSM-------N----------VIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKR 149 (557)
T ss_pred CCC--CHH-------H----------HHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHH
Confidence 974 222 3 999999999999999999999999999999999999999999998899999999
Q ss_pred HHHHhHHHHHcccchhHHH
Q 015782 333 FAAENLAAVMRSDGFEYLK 351 (400)
Q Consensus 333 ~i~~~~~~v~~~~~f~~l~ 351 (400)
||.+||.++.++++|.+|+
T Consensus 150 ~i~~~f~~v~~~~ef~~L~ 168 (557)
T PHA02713 150 MLMSNIPTLITTDAFKKTV 168 (557)
T ss_pred HHHHHHHHHhCChhhhhCC
Confidence 9999999999999998887
No 2
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.94 E-value=6.2e-27 Score=213.33 Aligned_cols=170 Identities=27% Similarity=0.471 Sum_probs=157.4
Q ss_pred CcHHHHHHHhhhCCCCCcEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhccCCC
Q 015782 177 SDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTL 255 (400)
Q Consensus 177 ~~~~~~l~~l~~~~~~sDv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~ 255 (400)
..+++++.+++-+++++||+|+|++++|+|||.|||+||.|||+|+.|+|+|+ +..|.|.+...++|+.+|+|||+|.+
T Consensus 29 ~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~ 108 (620)
T KOG4350|consen 29 NNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKI 108 (620)
T ss_pred cchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcce
Confidence 45679999999999999999999999999999999999999999999999999 99999999999999999999999998
Q ss_pred CCCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Q 015782 256 TEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAA 335 (400)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~ 335 (400)
..... ..+.+.+.|.+|++|++..|.....++|++.+..+|++.++..|..|++++|.+.|+.|+.
T Consensus 109 ~l~~~--------------~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD 174 (620)
T KOG4350|consen 109 DLAGV--------------EEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMD 174 (620)
T ss_pred ecccc--------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHh
Confidence 86554 2566999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHcccchhHHHhhChHHHHHHHH
Q 015782 336 ENLAAVMRSDGFEYLKENCPSLQSELLK 363 (400)
Q Consensus 336 ~~~~~v~~~~~f~~l~~~~p~l~~el~~ 363 (400)
.|..+++..+.|..|++. -+.+++.
T Consensus 175 rnA~~lL~~~sFn~LSk~---sL~e~l~ 199 (620)
T KOG4350|consen 175 RNADQLLEDPSFNRLSKD---SLKELLA 199 (620)
T ss_pred cCHHhhhcCcchhhhhHH---HHHHHHh
Confidence 999999999999999863 4444443
No 3
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=3.6e-26 Score=232.04 Aligned_cols=173 Identities=16% Similarity=0.241 Sum_probs=149.9
Q ss_pred hCCCCCcEEEEe--CCeEEeeeehhhhccCHHHHHhhcCccccccceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCC
Q 015782 188 DNAESSDITFDV--AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVAT 265 (400)
Q Consensus 188 ~~~~~sDv~l~v--~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~ 265 (400)
.++.+|||+|.+ +|++|+|||.||+++|+||++||.+++. ..+|.|.+ ++++|+.+|+|+|||++.++.+
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~----- 76 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-DYDSFNEVIKYIYTGKINITSN----- 76 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-CHHHHHHHHHHhcCCceEEcHH-----
Confidence 388999999998 9999999999999999999999999887 57899999 9999999999999999976655
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhHHHHHccc
Q 015782 266 PSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSD 345 (400)
Q Consensus 266 ~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~ 345 (400)
| +.+||.+|++|+++.|+..|+++|.+.++.+|++.++.+|..|++..|++.|.+||.+|+.++.+++
T Consensus 77 --~----------~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~ 144 (534)
T PHA03098 77 --N----------VKDILSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDP 144 (534)
T ss_pred --H----------HHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 3 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHhhChHHHHHHHHHhhcccccCCCCCCcchhhhhhccCC
Q 015782 346 GFEYLKENCPSLQSELLKTVAGCEEDCSSGGKSRSVWAQLSDGG 389 (400)
Q Consensus 346 ~f~~l~~~~p~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (400)
+|.+|+ .+.+..++..+... ...+..++..+-.+.
T Consensus 145 ~f~~l~-------~~~l~~ll~~~~L~--v~~E~~v~~av~~W~ 179 (534)
T PHA03098 145 DFIYLS-------KNELIKILSDDKLN--VSSEDVVLEIIIKWL 179 (534)
T ss_pred hhhcCC-------HHHHHHHhcCCCcC--cCCHHHHHHHHHHHH
Confidence 999997 34445555444433 333444555554444
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=5.8e-26 Score=226.32 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=140.4
Q ss_pred HHHHHHhhhCCCCCcEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccccceEEE--cCCCHHHHHHHhhhhccCCCCC
Q 015782 180 GAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIII--SDLEPKVFKAMLHFIYRDTLTE 257 (400)
Q Consensus 180 ~~~l~~l~~~~~~sDv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~i~l--~~~~~~~f~~~L~~iYt~~~~~ 257 (400)
.+++..|...+.++||++.+ |++|+|||.|||+.||||++||.++++|+..+|.+ .++++++++.+|+|+|||++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhhHHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 46777888899999998866 55999999999999999999999999998334555 3899999999999999999986
Q ss_pred CcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Q 015782 258 DVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (400)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (400)
+.+ | +++||.+|++|+++.+++.|++||.+.|+++||+.++.+|+.|++..|++.+.+||.+|
T Consensus 89 t~~-------n----------V~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 89 DSH-------N----------VVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred ecc-------c----------HHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 655 6 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcc--cchhHHH
Q 015782 338 LAAVMRS--DGFEYLK 351 (400)
Q Consensus 338 ~~~v~~~--~~f~~l~ 351 (400)
|.++.++ ++|..|+
T Consensus 152 F~~v~~~~~~ef~~L~ 167 (480)
T PHA02790 152 FLELEDDIIDNFDYLS 167 (480)
T ss_pred HHHHhcccchhhhhCC
Confidence 9999986 7887765
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=6e-26 Score=228.70 Aligned_cols=159 Identities=27% Similarity=0.419 Sum_probs=153.1
Q ss_pred CCcHHHHHHHhhhCCCCCcEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhccCC
Q 015782 176 ESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDT 254 (400)
Q Consensus 176 ~~~~~~~l~~l~~~~~~sDv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~ 254 (400)
...+.+.|..+++.+.++||++.+++++|+|||.|||+.||||++||.++++|+ +.+|.+.++++.+++.+|+|+||+.
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~ 99 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGK 99 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcce
Confidence 455678899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Q 015782 255 LTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFA 334 (400)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i 334 (400)
+.+... | +++||.+|++||++.+.+.|.+||.+++.++|++.+..+|+.|++..|...+..|+
T Consensus 100 i~i~~~-------n----------Vq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i 162 (571)
T KOG4441|consen 100 LEISED-------N----------VQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYI 162 (571)
T ss_pred EEechH-------h----------HHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 987665 5 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHcccchhHHH
Q 015782 335 AENLAAVMRSDGFEYLK 351 (400)
Q Consensus 335 ~~~~~~v~~~~~f~~l~ 351 (400)
..||.++.++++|.+|+
T Consensus 163 ~~~F~~v~~~eefl~L~ 179 (571)
T KOG4441|consen 163 LQHFAEVSKTEEFLLLS 179 (571)
T ss_pred HHHHHHHhccHHhhCCC
Confidence 99999999999999987
No 6
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=99.90 E-value=8e-23 Score=169.92 Aligned_cols=131 Identities=29% Similarity=0.633 Sum_probs=106.3
Q ss_pred eeceEEEEEEcCccccccCCCCCeEeeceeeecC---eEEEEEEecCCCCCCCCCCeEEEEEEEec-CCccceeEEEEEE
Q 015782 21 TVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGG---YQWAIYFYPDGKNPEDNSAYVSVFIALAN-EGTDVRALFELTL 96 (400)
Q Consensus 21 ~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~gg---~~W~l~lyp~g~~~~~~~~~lsl~L~~~~-~~w~v~~~~~~~l 96 (400)
+...+|+|+|+|||.+++ +.|+++.|++|.+|| ++|+|++||+|.. +++.+|+||||.+.+ ..+++.|+|+++|
T Consensus 2 ~~~~~~~w~I~~fS~~~~-~~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~-~~~~~~iSlyL~l~~~~~~~v~a~f~~~l 79 (139)
T cd03774 2 VVKFCYMWTISNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSI 79 (139)
T ss_pred ceEEEEEEEECCchhhhh-cCCCEEECCCeecCCcCCceEEEEEeCCCCC-CCCCCeEEEEEEEccCCCCcEEEEEEEEE
Confidence 467899999999999875 568899999999998 5999999999986 346789999999865 4578999999999
Q ss_pred ecCCCCCccceecccccccccCCceecccCccccchhhhchhhhc--cCCCCCCCcEEEEEEeeeee
Q 015782 97 LDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDYLKDDCLKINCTVGVVV 161 (400)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 161 (400)
+|++++...... ....+.|. ...+|||.+|+++++|. .+||+.||+++|+|+|.|+.
T Consensus 80 ~n~~~~~~~~~~-------~~~~~~f~-~~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 80 LNAKGEETKAME-------SQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred EecCCCeeeeec-------ccCcEeCC-CCCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 999875432110 11224454 35789999999999994 57999999999999999864
No 7
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=99.90 E-value=5.3e-23 Score=170.73 Aligned_cols=131 Identities=27% Similarity=0.420 Sum_probs=103.3
Q ss_pred eEEEEEEcCccccc-cCCCCC--eEeecee--eecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC------CccceeEE
Q 015782 24 GSHKFVIQGYSLAK-GMGIGK--HIASDNF--TVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (400)
Q Consensus 24 ~~~~w~I~nfs~~~-~~~~~~--~~~S~~f--~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~~~~ 92 (400)
|++.|+|++|+.++ +++.|+ .+.|++| .++||+|+|++||||.+ .+.++|||+||.+.++ .|++.+++
T Consensus 1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wp~~~~~ 79 (148)
T cd03780 1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRLCARAYLNGDG-SGKGTHLSLYFVVMRGEFDSLLQWPFRQRV 79 (148)
T ss_pred CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCccccccCcceEEEE
Confidence 68999999999886 456777 8999999 89999999999999998 4468899999999876 69999999
Q ss_pred EEEEecCCCCCccceecccccccccCCceecc----cCccccchhhhchhhhccC--CCCCCCcEEEEEEee
Q 015782 93 ELTLLDQSGKGKHKVHSHFDRSLESGPYTLKY----RGSMWGYKRFFRRAMLETS--DYLKDDCLKINCTVG 158 (400)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~----~~~~wG~~~fi~~~~L~~~--~~l~~d~l~i~~~v~ 158 (400)
+|+|+||++.+.+... .+... .....|.. .+..||++.|+++++|+.+ +|++||+++|+|.|.
T Consensus 80 tfsLlDq~~~~~~~~~-~~~~~--~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v~ 148 (148)
T cd03780 80 TLMLLDQSGKKNHIME-TFKAD--PNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAVD 148 (148)
T ss_pred EEEEECCCCCCCCcce-eeecC--CccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEEC
Confidence 9999999865443111 11110 01123422 1457999999999999865 999999999999873
No 8
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=99.89 E-value=1.2e-22 Score=168.38 Aligned_cols=126 Identities=13% Similarity=0.260 Sum_probs=102.3
Q ss_pred ceEEEEEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCC-CCCCeEEEEEEEec----CCccceeEEEEEEe
Q 015782 23 NGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPE-DNSAYVSVFIALAN----EGTDVRALFELTLL 97 (400)
Q Consensus 23 ~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~-~~~~~lsl~L~~~~----~~w~v~~~~~~~l~ 97 (400)
.++|+|+|.|||.+ ++.++|+.|.+||++|+|.+||+|.... +..+|+||||.|.+ ..|++.|.|+++|+
T Consensus 2 ~~~~~~~I~~~S~l-----~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~ 76 (137)
T cd03772 2 EATFSFTVERFSRL-----SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRII 76 (137)
T ss_pred CcEEEEEECCcccC-----CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEE
Confidence 58999999999998 3689999999999999999999996531 23589999999965 35899999999999
Q ss_pred cCCCCCccceecccccccccCCceecccCccccchhhhchhhhc--cCCCCCCCcEEEEEEeeeee
Q 015782 98 DQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE--TSDYLKDDCLKINCTVGVVV 161 (400)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~--~~~~l~~d~l~i~~~v~i~~ 161 (400)
|+++....... ...+.|......|||++|++|++|. .+|||.||+++|+|+|.|..
T Consensus 77 ~~~~~~~~~~~--------~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~ 134 (137)
T cd03772 77 NYKDDEPSFSR--------RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADA 134 (137)
T ss_pred cCCCCcccEEE--------eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeC
Confidence 99853322111 1224565566789999999999994 68999999999999998743
No 9
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=99.89 E-value=1.6e-22 Score=173.84 Aligned_cols=135 Identities=24% Similarity=0.385 Sum_probs=105.5
Q ss_pred eeceEEEEEEcCccccc-cCCCCC--eEeeceeeec--CeEEEEEEecCCCCCCCCCCeEEEEEEEecC------Cccce
Q 015782 21 TVNGSHKFVIQGYSLAK-GMGIGK--HIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVR 89 (400)
Q Consensus 21 ~~~~~~~w~I~nfs~~~-~~~~~~--~~~S~~f~~g--g~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~ 89 (400)
...|+|.|+|+||+..+ +.+.|+ .++|++|++| ||+|+|++||||.+ .+.++|+|+||.+.++ .|++.
T Consensus 36 ~~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w~i~~ypnG~g-~~~~~~iSvyl~L~~ge~D~~L~WP~~ 114 (186)
T cd03777 36 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDG-MGKGTHLSLFFVIMRGEYDALLPWPFK 114 (186)
T ss_pred ccceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCCcee
Confidence 34699999999999886 356666 8999999999 99999999999988 4468899999999875 59999
Q ss_pred eEEEEEEecCCCCCccceecccccccccCCceec-cc---CccccchhhhchhhhccCCCCCCCcEEEEEEeee
Q 015782 90 ALFELTLLDQSGKGKHKVHSHFDRSLESGPYTLK-YR---GSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGV 159 (400)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~---~~~wG~~~fi~~~~L~~~~~l~~d~l~i~~~v~i 159 (400)
++++|+|+||++...+. ...+...- ....|. +. +..||++.|+++++|+.++|++||+++|+|.|..
T Consensus 115 ~~~tfsLlDQ~~~~~~~-~~~~~p~p--~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~~~ylkdD~l~Irv~v~~ 185 (186)
T cd03777 115 QKVTLMLMDQGSSRRHL-GDAFKPDP--NSSSFKKPTGEMNIASGCPVFVAQTVLENGTYIKDDTIFIKVIVDT 185 (186)
T ss_pred EEEEEEEEcCCCccccc-cceeccCC--ccccccCCccCCCCCCCchheeEHHHhccCCcEeCCEEEEEEEEec
Confidence 99999999997532221 11111010 012232 22 4579999999999999999999999999998863
No 10
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=99.88 E-value=4.6e-22 Score=163.99 Aligned_cols=125 Identities=27% Similarity=0.532 Sum_probs=100.7
Q ss_pred eceEEEEEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC-CccceeEEEEEEecCC
Q 015782 22 VNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-GTDVRALFELTLLDQS 100 (400)
Q Consensus 22 ~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~-~w~v~~~~~~~l~~~~ 100 (400)
..++++|+|+|||.+++ .|+++.|+.|.+||++|+|.+||+|.. ++.++|||+||.+..+ .|.+.++|+++|+||.
T Consensus 3 ~~~~~~~~I~~fS~~~~--~~~~~~S~~F~vgG~~W~i~~yP~G~~-~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~ 79 (132)
T cd03773 3 PYDSATFTLENFSTLRQ--SADPVYSDPLNVDGLCWRLKVYPDGNG-EVRGNFLSVFLELCSGLGEASKYEYRVEMVHQA 79 (132)
T ss_pred CCcccEEEECChhhhhc--CCcceeCCCeEeCCccEEEEEECCCCC-CCCCCEEEEEEEeecCCCCceeEEEEEEEEcCC
Confidence 35789999999999863 578999999999999999999999987 3457899999998764 5788899999999995
Q ss_pred CCCccceecccccccccCCceecccCccccchhhhchhhhccCCCCCC--CcEEEEEEee
Q 015782 101 GKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKD--DCLKINCTVG 158 (400)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~~~~~l~~--d~l~i~~~v~ 158 (400)
+...+... . ..+.|.. +.+|||..|+++++|+++|||.| |+++|+|.|+
T Consensus 80 ~~~~~~~~-~-------~~~~f~~-~~~wG~~~Fi~~~~L~~~gfl~~~~D~l~i~~~v~ 130 (132)
T cd03773 80 NPTKNIKR-E-------FASDFEV-GECWGYNRFFRLDLLINEGYLLPENDTLILRFSVR 130 (132)
T ss_pred CCccceEE-e-------ccccccC-CCCcCHHHhccHHHHhhCCCcCCCCCEEEEEEEEe
Confidence 33322111 1 1233433 46799999999999988899999 9999999985
No 11
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat
Probab=99.88 E-value=3.3e-22 Score=165.10 Aligned_cols=130 Identities=23% Similarity=0.380 Sum_probs=99.8
Q ss_pred eEEEEEEcCcccccc-CCCC--CeEeeceeeec--CeEEEEEEecCCCCCCCCCCeEEEEEEEecC------CccceeEE
Q 015782 24 GSHKFVIQGYSLAKG-MGIG--KHIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (400)
Q Consensus 24 ~~~~w~I~nfs~~~~-~~~~--~~~~S~~f~~g--g~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~~~~ 92 (400)
|++.|+|.||+...+ ...| ..++||.|+.+ ||+|+|++||||.+ .+.++|+|+||.+.++ .|++.+++
T Consensus 1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w~i~~ypnG~~-~~~~~~iSv~l~l~~g~~D~~l~wpv~~~~ 79 (147)
T cd03779 1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKVCLRLYLNGDG-AGKGTHISLFFVIMKGEYDALLPWPFRHKV 79 (147)
T ss_pred CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEcCCCC-CCCCCEEEEEEEEecCCcccccCcceEEEE
Confidence 689999999985443 3233 47999999975 99999999999988 4468899999999874 59999999
Q ss_pred EEEEecCCCCCccceecccccccccCCceec----ccCccccchhhhchhhhccC--CCCCCCcEEEEEEee
Q 015782 93 ELTLLDQSGKGKHKVHSHFDRSLESGPYTLK----YRGSMWGYKRFFRRAMLETS--DYLKDDCLKINCTVG 158 (400)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~wG~~~fi~~~~L~~~--~~l~~d~l~i~~~v~ 158 (400)
+|+|+||.+.+... ..+.... ....|. ..+..||++.|+++++|+++ +|++||+++|+|+|.
T Consensus 80 tfsLlDq~~~~~~~--~~~~~~~--~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~ 147 (147)
T cd03779 80 TFMLLDQNNREHVI--DAFRPDL--SSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD 147 (147)
T ss_pred EEEEECCCCCCCCc--EeecCCc--ccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence 99999997543311 1111110 012343 33457999999999999876 999999999999874
No 12
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=99.88 E-value=4.1e-22 Score=167.96 Aligned_cols=132 Identities=23% Similarity=0.349 Sum_probs=102.6
Q ss_pred eEEEEEEcCccccccC--C-CCCeEeeceeeec--CeEEEEEEecCCCCCCCCCCeEEEEEEEecC------CccceeEE
Q 015782 24 GSHKFVIQGYSLAKGM--G-IGKHIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (400)
Q Consensus 24 ~~~~w~I~nfs~~~~~--~-~~~~~~S~~f~~g--g~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~~~~ 92 (400)
|+|.|+|.+||.++++ . .|+.+.|+.|++| ||.|+|++||||.. ++.++|+|+||.+.++ .|++.+++
T Consensus 1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~-~~~~~~vs~~l~l~~ge~d~~l~wp~~a~~ 79 (154)
T cd03781 1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKLQVSAFLNGNG-SGEGSHLSVYIRVLPGEYDNLLEWPFSHRI 79 (154)
T ss_pred CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEEEEEEECCCCC-CCCCCEEEEEEEEecCCcccccCCceeeEE
Confidence 6899999999988763 2 5689999999999 99999999999987 3467899999999874 69999999
Q ss_pred EEEEecCCCCC--cc-ceecccccccccCCceec--------ccCccccchhhhchhhhccCCCCCCCcEEEEEEee
Q 015782 93 ELTLLDQSGKG--KH-KVHSHFDRSLESGPYTLK--------YRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (400)
Q Consensus 93 ~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~f~--------~~~~~wG~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 158 (400)
+++|+||.+.. .. .+...+... .....|. ..+.+|||..|+++++|+.++|+.||+++|+|.|+
T Consensus 80 ~~~llDq~~~~~~~~~~~~~~~~~~--~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~Irc~v~ 154 (154)
T cd03781 80 TFTLLDQSDPSLSKPQHITETFTPD--PTWKNFQKPSASRLDESTLGFGYPKFISHEDLKKRNYIKDDAIFLRASVE 154 (154)
T ss_pred EEEEECCCCCccccCcceEEEEEcC--CchhhhcCCcccccCCCCCccchhHeeEHHHHhhCCcccCCEEEEEEEeC
Confidence 99999998641 11 111111110 0112222 23457999999999999989999999999999884
No 13
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=99.88 E-value=7e-22 Score=162.99 Aligned_cols=118 Identities=25% Similarity=0.474 Sum_probs=97.4
Q ss_pred EEEEEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEec---------CCccceeEEEEE
Q 015782 25 SHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALAN---------EGTDVRALFELT 95 (400)
Q Consensus 25 ~~~w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~---------~~w~v~~~~~~~ 95 (400)
+|+|+|+|||.+ ++.+.|++|.+||++|+|.+||+|.. ..+|+|+||.+.+ .+|.+.|+|+++
T Consensus 2 ~f~w~I~~fS~~-----~~~~~S~~F~vGG~~W~l~~yP~G~~---~~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~ 73 (134)
T cd03775 2 SFTWRIKNWSEL-----EKKVHSPKFKCGGFEWRILLFPQGNS---QTGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALV 73 (134)
T ss_pred cEEEEECCcccC-----CcceeCCCEEECCeeEEEEEeCCCCC---CCCeEEEEEEecCcccccccCCCCCeEEEEEEEE
Confidence 589999999996 36899999999999999999999976 2789999998753 368899999999
Q ss_pred EecCCCCCccceecccccccccCCceecccCccccchhhhchhhhc------cCCCCCCCcEEEEEEee
Q 015782 96 LLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE------TSDYLKDDCLKINCTVG 158 (400)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~------~~~~l~~d~l~i~~~v~ 158 (400)
|+|+.+...+... ...+.|.....+|||.+|+++++|+ .+|||.||+++|++.|.
T Consensus 74 l~n~~~~~~~~~~--------~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~ 134 (134)
T cd03775 74 ISNPGDPSIQLSN--------VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR 134 (134)
T ss_pred EEcCCCCccceEc--------cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence 9999754332111 1246677667889999999999996 47999999999998873
No 14
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=99.88 E-value=3.1e-22 Score=168.59 Aligned_cols=132 Identities=27% Similarity=0.401 Sum_probs=101.1
Q ss_pred eEEEEEEcCcccccc---CCCCCeEeeceeeec--CeEEEEEEecCCCCCCCCCCeEEEEEEEecC------CccceeEE
Q 015782 24 GSHKFVIQGYSLAKG---MGIGKHIASDNFTVG--GYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (400)
Q Consensus 24 ~~~~w~I~nfs~~~~---~~~~~~~~S~~f~~g--g~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~~~~ 92 (400)
|+|+|+|.+||.+++ .+.++.++|+.|.+| ||+|+|++||+|... +.++||||||.+.++ .|++.++|
T Consensus 1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w~i~~yP~G~~~-~~~~~lsl~L~l~~~~~d~~~~w~~~~~~ 79 (149)
T cd00270 1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKLCLRLYLNGDGT-GKGTHLSLFVHVMKGEYDALLEWPFRGKI 79 (149)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCC-CCCCEEEEEEEEeccCCCccccCCccceE
Confidence 689999999999875 256789999999999 999999999999863 356899999998653 49999999
Q ss_pred EEEEecCCCCCccce-ecccccccccCCceec-----ccCccccchhhhchhhhccCCCCCCCcEEEEEEee
Q 015782 93 ELTLLDQSGKGKHKV-HSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (400)
Q Consensus 93 ~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~f~-----~~~~~wG~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 158 (400)
+++|+||.++...+. ...+.... ....|. ....+|||.+|+++++|+++||+.||+++|+|+|.
T Consensus 80 ~~~l~d~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v~ 149 (149)
T cd00270 80 TLTLLDQSDDSKRKHITETFMPDP--NSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEVD 149 (149)
T ss_pred EEEEECCCCccccCceEEEEEcCC--chHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEEC
Confidence 999999986411111 00000000 011222 24568999999999999888999999999999884
No 15
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=99.87 E-value=3.3e-22 Score=167.69 Aligned_cols=131 Identities=23% Similarity=0.312 Sum_probs=100.5
Q ss_pred eEEEEEEcCccccc-cCCCCCe--Eeeceeee--cCeEEEEEEecCCCCCCCCCCeEEEEEEEecC------CccceeEE
Q 015782 24 GSHKFVIQGYSLAK-GMGIGKH--IASDNFTV--GGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALF 92 (400)
Q Consensus 24 ~~~~w~I~nfs~~~-~~~~~~~--~~S~~f~~--gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~~~~ 92 (400)
|+|.|+|++||.++ +++.|+. ++|+.|.+ |||+|+|++||||... +..+|||+||.+.++ +|++.+++
T Consensus 1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W~i~~yP~G~~~-~~~~~lS~~L~l~~~~~d~~l~wpv~a~~ 79 (147)
T cd03776 1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKLCARLNLSLPEA-RCPNYISLFVHLMQGENDSHLDWPFQGTI 79 (147)
T ss_pred CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceEEEEEEeCCCCC-CCCCEEEEEEEEeccCCCcccCCccccee
Confidence 68999999999755 4677775 88999985 7999999999999873 467899999998753 49999999
Q ss_pred EEEEecCCCCCccceecccccccccCCceec-----ccCccccchhhhchhhhccCCCCCCCcEEEEEEee
Q 015782 93 ELTLLDQSGKGKHKVHSHFDRSLESGPYTLK-----YRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (400)
Q Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~wG~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 158 (400)
+++|+||.+...+.... +... .....|. ..+..|||..|+++++|+.++|+.||+++|+|+|.
T Consensus 80 ~~~lldq~~~~~~~~~~-~~~~--~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 80 TLTLLDQSEPRQNIHET-MMSK--PELLAFQRPTTDRNPKGFGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred EEEEECCCcccCccEEE-EEcC--CChHhhcCCCcCCCCCCeeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 99999998643321100 0000 0112232 12457999999999999988999999999999883
No 16
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=99.86 E-value=2.1e-21 Score=163.17 Aligned_cols=134 Identities=24% Similarity=0.397 Sum_probs=101.3
Q ss_pred ceEEEEEEcCccccc-cCCCCCeEeecee-eecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC------Ccc-ceeEEE
Q 015782 23 NGSHKFVIQGYSLAK-GMGIGKHIASDNF-TVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTD-VRALFE 93 (400)
Q Consensus 23 ~~~~~w~I~nfs~~~-~~~~~~~~~S~~f-~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~-v~~~~~ 93 (400)
+++|+|+|.|||.++ +.+.|+.++|++| .+|||+|+|++||||.+. .++||||||.+.++ .|+ +.++++
T Consensus 1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w~I~~YPnG~~~--~~~~lSlyL~L~~g~~d~~L~WP~v~a~~t 78 (167)
T cd03771 1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAFQVGLYPNGTES--YPGYTGLYFHLCSGENDDVLEWPCPNRQAT 78 (167)
T ss_pred CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEEEEEEEeCCCCC--CCCcceEEEEEecCCccccccCcceeEEEE
Confidence 468999999999985 6778999999998 899999999999999884 67899999999763 388 589999
Q ss_pred EEEecCCCCCcccee--ccccccc--cc---------CCce----ec-------ccCccccchhhhchhhhccCCCCCCC
Q 015782 94 LTLLDQSGKGKHKVH--SHFDRSL--ES---------GPYT----LK-------YRGSMWGYKRFFRRAMLETSDYLKDD 149 (400)
Q Consensus 94 ~~l~~~~~~~~~~~~--~~~~~~~--~~---------~~~~----f~-------~~~~~wG~~~fi~~~~L~~~~~l~~d 149 (400)
++|+||..+...+.+ ..|...- .+ ++.. .. .++.+|||+.|+++++|+..+|++||
T Consensus 79 ~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~~r~ylk~d 158 (167)
T cd03771 79 MTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLRRRDFLKGD 158 (167)
T ss_pred EEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhccCCCCcCC
Confidence 999999742221111 1111000 00 0000 11 14458999999999999888899999
Q ss_pred cEEEEEEee
Q 015782 150 CLKINCTVG 158 (400)
Q Consensus 150 ~l~i~~~v~ 158 (400)
++.|+++++
T Consensus 159 tl~i~~~~~ 167 (167)
T cd03771 159 DLIILLDFE 167 (167)
T ss_pred EEEEEEEeC
Confidence 999998874
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=99.82 E-value=9.3e-20 Score=152.02 Aligned_cols=135 Identities=21% Similarity=0.285 Sum_probs=100.7
Q ss_pred eeceEEEEEEcCccccccCC-C--CCeEeeceeee--cCeEEEEEEecCCCCCCCCCCeEEEEEEEecC------Cccce
Q 015782 21 TVNGSHKFVIQGYSLAKGMG-I--GKHIASDNFTV--GGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVR 89 (400)
Q Consensus 21 ~~~~~~~w~I~nfs~~~~~~-~--~~~~~S~~f~~--gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~ 89 (400)
...|+|+|+|.||+.+.+.. . ...++||+|+. +||+|+|++||||.+ .+.+.|||+|+.+.++ .|++.
T Consensus 16 ~~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~~l~~ylnG~g-~~~g~~LSly~~l~~Ge~D~~L~WPf~ 94 (164)
T cd03778 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDG-TGRGTHLSLFFVVMKGPNDALLRWPFN 94 (164)
T ss_pred ccCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEEEEEEEeCCCC-CCCCCEEEEEEEEecCCcCcccCCcee
Confidence 45799999999999766432 2 34799999985 489999999999988 4468899999999874 49999
Q ss_pred eEEEEEEecCCCCCccceecccccccccC-Ccee-cccCccccchhhhchhhhcc-CCCCCCCcEEEEEEee
Q 015782 90 ALFELTLLDQSGKGKHKVHSHFDRSLESG-PYTL-KYRGSMWGYKRFFRRAMLET-SDYLKDDCLKINCTVG 158 (400)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~f-~~~~~~wG~~~fi~~~~L~~-~~~l~~d~l~i~~~v~ 158 (400)
.+++++|+||++. .+. ...+....... ..+. ...+..|||+.|+++++|.. .+|++||++.|+|.|.
T Consensus 95 ~~itl~llDQ~~r-~hi-~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~~~~Yv~dDtlfIk~~Vd 164 (164)
T cd03778 95 QKVTLMLLDQNNR-EHV-IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEAKNSYVRDDAIFIKAIVD 164 (164)
T ss_pred eEEEEEEECCCCC-Ccc-eeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccccCCcccCCeEEEEEEEC
Confidence 9999999999742 221 11121111100 0111 33455799999999999965 7999999999999873
No 18
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.82 E-value=1.2e-19 Score=169.70 Aligned_cols=176 Identities=28% Similarity=0.451 Sum_probs=155.5
Q ss_pred ccccCCCCcHHHHHHHhhhCCCCCcEEEEeCC-----eEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHH
Q 015782 170 HSIQVPESDIGAHFGMLLDNAESSDITFDVAG-----EKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVF 243 (400)
Q Consensus 170 ~~~~~~~~~~~~~l~~l~~~~~~sDv~l~v~~-----~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f 243 (400)
+-.+.+.+++......++++...+|+.|+|++ +++++||.+|+..|.+|++||.|++.+. ..+|.++|+++.+|
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaF 171 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAF 171 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHh
Confidence 34566778888899999999999999999974 6999999999999999999999999999 99999999999999
Q ss_pred HHHhhhhccCCCCCCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHH-HHHcC
Q 015782 244 KAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSL-ADEHH 322 (400)
Q Consensus 244 ~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~-a~~~~ 322 (400)
..+|+|||++.+....+ | ++.+|.+|++|.++.|.+.|.++|...+...|.+..+-- |..++
T Consensus 172 l~~L~flYsdev~~~~d-------t----------vi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ 234 (521)
T KOG2075|consen 172 LAFLRFLYSDEVKLAAD-------T----------VITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFD 234 (521)
T ss_pred HHHHHHHhcchhhhhHH-------H----------HHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhc
Confidence 99999999998876655 3 999999999999999999999999998877777666665 99999
Q ss_pred chHHHHHHHHHHHHhHHHHHcccchhHHHhhChHHHHHHHH
Q 015782 323 ATELKAVCLRFAAENLAAVMRSDGFEYLKENCPSLQSELLK 363 (400)
Q Consensus 323 ~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~p~l~~el~~ 363 (400)
-+.|...|++.|..++...+..++|.+.... -+...++++
T Consensus 235 ep~Li~~c~e~id~~~~~al~~EGf~did~~-~dt~~evl~ 274 (521)
T KOG2075|consen 235 EPSLISICLEVIDKSFEDALTPEGFCDIDST-RDTYEEVLR 274 (521)
T ss_pred CHHHHHHHHHHhhhHHHhhhCccceeehhhH-HHHHHHHHh
Confidence 9999999999999999999999999988743 333444433
No 19
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.82 E-value=8.2e-20 Score=151.92 Aligned_cols=167 Identities=28% Similarity=0.407 Sum_probs=141.0
Q ss_pred CcHHHHHHHhhhCCCCCcEEEEeC---CeEEeeeehhhhccCHHHHHhhcCccccccceEEEcCCCHHHHHHHhhhhccC
Q 015782 177 SDIGAHFGMLLDNAESSDITFDVA---GEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRD 253 (400)
Q Consensus 177 ~~~~~~l~~l~~~~~~sDv~l~v~---~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~L~~iYt~ 253 (400)
+.+..-...+++.+++||++|.++ ++.++|||.+|++||.+.+-. ++-.|.+.+..+.|.++++|..+++||||+
T Consensus 51 SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkfa--N~~dekse~~~~dDad~Ea~~t~iRWIYTD 128 (280)
T KOG4591|consen 51 SRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKFA--NGGDEKSEELDLDDADFEAFHTAIRWIYTD 128 (280)
T ss_pred HHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhhc--cCCCcchhhhcccccCHHHHHHhheeeecc
Confidence 344555678999999999999998 578999999999999987632 222233677888999999999999999999
Q ss_pred CCCCCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Q 015782 254 TLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRF 333 (400)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~ 333 (400)
++.+..+ ..++.+|.++|++|+++.|+..|++-+...++++||+.++++|+..+...|...|...
T Consensus 129 Eidfk~d---------------D~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~ei 193 (280)
T KOG4591|consen 129 EIDFKED---------------DEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEI 193 (280)
T ss_pred ccccccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9987655 4679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHcccchhHHHhhChHHHHHHHHH
Q 015782 334 AAENLAAVMRSDGFEYLKENCPSLQSELLKT 364 (400)
Q Consensus 334 i~~~~~~v~~~~~f~~l~~~~p~l~~el~~~ 364 (400)
|+.++..+- ..+|.+++ |.++..+++.
T Consensus 194 IA~~W~dL~-~a~FaqMs---~aLLYklId~ 220 (280)
T KOG4591|consen 194 IAGAWDDLG-KADFAQMS---AALLYKLIDG 220 (280)
T ss_pred HHhhccccC-hHHHHhcc---HHHHHHHHcC
Confidence 999987654 45566655 6777666553
No 20
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=99.79 E-value=1.4e-18 Score=141.39 Aligned_cols=120 Identities=36% Similarity=0.615 Sum_probs=96.5
Q ss_pred eEEEEEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC-----CccceeEEEEEEec
Q 015782 24 GSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-----GTDVRALFELTLLD 98 (400)
Q Consensus 24 ~~~~w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~-----~w~v~~~~~~~l~~ 98 (400)
++|+|+|.+|+. ..++.++|+.|.++|+.|+|.+||+|... +.+|+|+||.|.+. .|.+.+++++.|++
T Consensus 1 ~~~~~~i~~~~~----~~~~~~~S~~f~~~g~~W~l~~~p~~~~~--~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~ 74 (126)
T cd00121 1 GKHTWKIVNFSE----LEGESIYSPPFEVGGYKWRIRIYPNGDGE--SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVN 74 (126)
T ss_pred CEEEEEECCCCC----CCCcEEECCCEEEcCEeEEEEEEcCCCCC--CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEEC
Confidence 479999999998 33688999999999999999999998763 57899999999764 49999999999999
Q ss_pred CCCCCccceecccccccccCCcee-cccCccccchhhhchhhhccCCCCCCCcEEEEEEee
Q 015782 99 QSGKGKHKVHSHFDRSLESGPYTL-KYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVG 158 (400)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~wG~~~fi~~~~L~~~~~l~~d~l~i~~~v~ 158 (400)
+++.+..... ....| .....+|||.+|++|++|.+..++.||+++|+|+|.
T Consensus 75 ~~~~~~~~~~---------~~~~~~~~~~~~~G~~~fi~~~~l~~~~~~~~d~l~i~~~v~ 126 (126)
T cd00121 75 QNGGKSLSKS---------FTHVFFSEKGSGWGFPKFISWDDLEDSYYLVDDSLTIEVEVK 126 (126)
T ss_pred CCCCccceEe---------ccCCcCCCCCCCCChHHeeEHHHhccCCcEECCEEEEEEEEC
Confidence 9833221111 11122 244678999999999999876668999999999873
No 21
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.79 E-value=2.1e-19 Score=143.40 Aligned_cols=106 Identities=33% Similarity=0.585 Sum_probs=93.2
Q ss_pred HHHhhhCCCCCcEEEEeC-CeEEeeeehhhhccCHHHHHhhcCc-cccc-cceEEEcCCCHHHHHHHhhhhccCCCCCC-
Q 015782 183 FGMLLDNAESSDITFDVA-GEKFPAHKLVLAARSPIFRSKFFDE-LEED-KQEIIISDLEPKVFKAMLHFIYRDTLTED- 258 (400)
Q Consensus 183 l~~l~~~~~~sDv~l~v~-~~~f~~hk~iLa~~S~~F~~~f~~~-~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~- 258 (400)
|+++++++.++|++|.++ +++|+|||.+|+++|+||+.||.+. +.+. ..+|.++++++++|+.+|+|+|+|.+...
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 467888999999999999 8999999999999999999999988 5555 56899999999999999999999998765
Q ss_pred cccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcC
Q 015782 259 VDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKD 305 (400)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 305 (400)
.. + +.+++.+|++|+++.|+..|+++|.++
T Consensus 81 ~~-------~----------~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DE-------N----------VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TT-------T----------HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HH-------H----------HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 44 3 999999999999999999999999753
No 22
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both
Probab=99.73 E-value=2.3e-17 Score=136.88 Aligned_cols=136 Identities=21% Similarity=0.374 Sum_probs=99.7
Q ss_pred ceEEEEEEcCccccccC-CCCCeEeeceeeec-CeEEEEEEecCCCCCCCCCCeEEEEEEEecCC------ccc-eeEEE
Q 015782 23 NGSHKFVIQGYSLAKGM-GIGKHIASDNFTVG-GYQWAIYFYPDGKNPEDNSAYVSVFIALANEG------TDV-RALFE 93 (400)
Q Consensus 23 ~~~~~w~I~nfs~~~~~-~~~~~~~S~~f~~g-g~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~~------w~v-~~~~~ 93 (400)
++.++|+|.||+.+.+. ..+..++||.|+.+ ||+.++++|+||.+..+.+.|+|||+.+.+++ |++ .-+++
T Consensus 1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~~~it 80 (167)
T cd03783 1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGYGVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALNRQAI 80 (167)
T ss_pred CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceEEEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcCCEEE
Confidence 45789999999876543 35778999999885 99999999999987445688999999998753 995 56999
Q ss_pred EEEecCCCCCccce--eccc-----------------ccccccCCce---ecccCccccchhhhchhhhccCCCCCCCcE
Q 015782 94 LTLLDQSGKGKHKV--HSHF-----------------DRSLESGPYT---LKYRGSMWGYKRFFRRAMLETSDYLKDDCL 151 (400)
Q Consensus 94 ~~l~~~~~~~~~~~--~~~~-----------------~~~~~~~~~~---f~~~~~~wG~~~fi~~~~L~~~~~l~~d~l 151 (400)
+.|+||+.+...+. ...| .+..+.+... -..++.++||+.|++++.|+..+|++||++
T Consensus 81 l~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~~r~yikdDtl 160 (167)
T cd03783 81 ITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLRRRSFLKNDDL 160 (167)
T ss_pred EEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHhhCCcccCCeE
Confidence 99999975222111 0111 1110000000 013456899999999999998999999999
Q ss_pred EEEEEee
Q 015782 152 KINCTVG 158 (400)
Q Consensus 152 ~i~~~v~ 158 (400)
.|.++++
T Consensus 161 fI~~~~~ 167 (167)
T cd03783 161 IIFVDFE 167 (167)
T ss_pred EEEEecC
Confidence 9998764
No 23
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.72 E-value=4.6e-17 Score=149.15 Aligned_cols=163 Identities=21% Similarity=0.323 Sum_probs=144.3
Q ss_pred HHHhhhCCCCCcEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEc----CCCHHHHHHHhhhhccCCCCC
Q 015782 183 FGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIIS----DLEPKVFKAMLHFIYRDTLTE 257 (400)
Q Consensus 183 l~~l~~~~~~sDv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~----~~~~~~f~~~L~~iYt~~~~~ 257 (400)
+..|+..++.|||++.+-|.+.+.||..|. +|+||++||.|.+.|+ ...|.++ .++..++..++.=+|.+++++
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 567788999999999999999999999998 8999999999999999 6666553 689999999999999999998
Q ss_pred CcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Q 015782 258 DVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (400)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (400)
..++ +..++++|..+++++|.+.|.+.+++.|+++|++..++.+.+|+.+.+++.|++++..|
T Consensus 139 ~l~d-----------------v~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 139 KLSD-----------------VVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred cHHH-----------------HHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 7663 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccchhHHHhhChHHHHHHHHHhhcccc
Q 015782 338 LAAVMRSDGFEYLKENCPSLQSELLKTVAGCEE 370 (400)
Q Consensus 338 ~~~v~~~~~f~~l~~~~p~l~~el~~~~~~~~~ 370 (400)
+-.+....-+.+++ .+|+..+++...
T Consensus 202 l~~i~~~q~l~ei~-------~~Lm~~ll~Spn 227 (488)
T KOG4682|consen 202 LMTIQNVQLLKEIS-------INLMKQLLGSPN 227 (488)
T ss_pred hHhhhhHHHHHhcC-------HHHHHHHhCCCC
Confidence 98888777444443 556666665443
No 24
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=99.72 E-value=3e-17 Score=132.57 Aligned_cols=113 Identities=31% Similarity=0.533 Sum_probs=89.9
Q ss_pred EcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC------CccceeEEEEEEecCCCCC
Q 015782 30 IQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVRALFELTLLDQSGKG 103 (400)
Q Consensus 30 I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~~~~~~~l~~~~~~~ 103 (400)
|.|||.+++ .+..+.|+.|.++|++|+|.+||+|+ ++++++||.|... .|++.+++++.++++++..
T Consensus 1 i~nfs~l~~--~~~~~~s~~~~~~g~~W~l~~~~~~~-----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 73 (119)
T PF00917_consen 1 IKNFSKLKE--GEEYSSSFVFSHGGYPWRLKVYPKGN-----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS 73 (119)
T ss_dssp ETTGGGHHT--SEEEEEEEESSTTSEEEEEEEETTES-----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE
T ss_pred CcccceEeC--CCcEECCCeEEECCEEEEEEEEeCCC-----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc
Confidence 789999982 23345558999999999999999975 5799999999864 7999999999999998765
Q ss_pred ccceecccccccccCCceecccCccccchhhhchhhhccCCCCCCCcEEEEEEeee
Q 015782 104 KHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGV 159 (400)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~~~~~l~~d~l~i~~~v~i 159 (400)
..+... .+.|.. ..+|||.+|++|++|.+..|+.||+++|+|+|.|
T Consensus 74 ~~~~~~---------~~~F~~-~~~~g~~~fi~~~~l~~~~fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 74 ISKRIK---------SHSFNN-PSSWGWSSFISWEDLEDPYFLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEEEEE---------CEEECT-TSEEEEEEEEEHHHHTTCTTSBTTEEEEEEEEEE
T ss_pred ceeeee---------eeEEee-ecccchhheeEHHHhCccCCeECCEEEEEEEEEC
Confidence 322111 244533 4789999999999998766999999999999976
No 25
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f
Probab=99.69 E-value=2.3e-16 Score=130.10 Aligned_cols=134 Identities=22% Similarity=0.315 Sum_probs=100.0
Q ss_pred ceEEEEEEcCcccccc-CCCCCeEeeceeee-cCeEEEEEEecCCCCCCCCCCeEEEEEEEecCC------ccce-eEEE
Q 015782 23 NGSHKFVIQGYSLAKG-MGIGKHIASDNFTV-GGYQWAIYFYPDGKNPEDNSAYVSVFIALANEG------TDVR-ALFE 93 (400)
Q Consensus 23 ~~~~~w~I~nfs~~~~-~~~~~~~~S~~f~~-gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~~------w~v~-~~~~ 93 (400)
++.++|+|.||+.+.+ .+.+..++||+|+. .||+.++++|+||.+. + +.|||||+.+.+++ |++. .+++
T Consensus 1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl~l~~ylnG~g~-~-~~~lsl~~~lm~Ge~D~~L~WPf~~~qit 78 (167)
T cd03782 1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSFQVGLYLNGTDD-Y-PGNLAIYLHLTSGPNDDQLQWPCPWQQAT 78 (167)
T ss_pred CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCceeEEEEEecCCCC-C-CCEEEEEEEEeccCCCccccCCCcCCeEE
Confidence 4679999999987654 35677899999985 5999999999999984 3 68999999998753 9999 8999
Q ss_pred EEEecCCCCC---ccceec-ccccccccC---Cc------------e-----ecccCccccchhhhchhhhccCCCCCCC
Q 015782 94 LTLLDQSGKG---KHKVHS-HFDRSLESG---PY------------T-----LKYRGSMWGYKRFFRRAMLETSDYLKDD 149 (400)
Q Consensus 94 ~~l~~~~~~~---~~~~~~-~~~~~~~~~---~~------------~-----f~~~~~~wG~~~fi~~~~L~~~~~l~~d 149 (400)
+.|+||+.+. .+.+.. .+.....+. .+ . ...++.++||+.|++++.|+...|++||
T Consensus 79 ~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~~r~yikdD 158 (167)
T cd03782 79 MMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLRSRDFIKGD 158 (167)
T ss_pred EEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHhhcCcccCC
Confidence 9999997522 221110 122221111 11 0 0123678999999999999989999999
Q ss_pred cEEEEEEee
Q 015782 150 CLKINCTVG 158 (400)
Q Consensus 150 ~l~i~~~v~ 158 (400)
.+.|-++++
T Consensus 159 ~ifi~~~~e 167 (167)
T cd03782 159 DVIFLLTME 167 (167)
T ss_pred eEEEEEecC
Confidence 999987763
No 26
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.68 E-value=1.3e-16 Score=157.38 Aligned_cols=165 Identities=21% Similarity=0.318 Sum_probs=134.2
Q ss_pred CCCcEEEEe-CCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhc-cCCCCCCcccCcCCCC
Q 015782 191 ESSDITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIY-RDTLTEDVDVDVATPS 267 (400)
Q Consensus 191 ~~sDv~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iY-t~~~~~~~~~~~~~~~ 267 (400)
..-|+.|.+ +|+.++|||++|++|++||..||..-+.|+ .-.+.+-.+..+.+..+|+|+| +++.....+
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~------- 781 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKD------- 781 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhc-------
Confidence 344666666 678899999999999999999999888888 6555555667999999999999 444443322
Q ss_pred CCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhHHHHHcccch
Q 015782 268 SSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSDGF 347 (400)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f 347 (400)
....+++.++|.+||.|.+..|+..||..|.+.++..++..+|++|..|++..|+..|++||+.|+..++.....
T Consensus 782 -----~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi 856 (1267)
T KOG0783|consen 782 -----LKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSI 856 (1267)
T ss_pred -----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccH
Confidence 223567999999999999999999999999999999999999999999999999999999999999999877666
Q ss_pred hHHHhhChHHHHHHHHHhhc
Q 015782 348 EYLKENCPSLQSELLKTVAG 367 (400)
Q Consensus 348 ~~l~~~~p~l~~el~~~~~~ 367 (400)
.++...+..-+.+-++++..
T Consensus 857 ~~~dg~~LK~l~~~yrkm~~ 876 (1267)
T KOG0783|consen 857 SEWDGFHLKKLAQRYRKMLS 876 (1267)
T ss_pred hhhcchHHHHHHHHHHHHhh
Confidence 66554444444445555544
No 27
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.66 E-value=2.5e-16 Score=119.96 Aligned_cols=89 Identities=39% Similarity=0.655 Sum_probs=82.2
Q ss_pred cEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCCCCCC
Q 015782 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMS 272 (400)
Q Consensus 194 Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 272 (400)
|+++.++|+.|+|||.+|+++|+||++||.+++.+. ...+.+++.+++.|+.+|+|+|++.+..... +
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~-------~---- 69 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEE-------N---- 69 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHH-------H----
Confidence 789999999999999999999999999999988877 8899999999999999999999998876554 2
Q ss_pred CchHHHHHHHHHHHhhhChHhHHHHHH
Q 015782 273 SVSDTLTAKLLAAADRYGLERLRLMCG 299 (400)
Q Consensus 273 ~~~~~~~~~ll~~A~~~~~~~L~~~c~ 299 (400)
+..++.+|++|+++.|++.|+
T Consensus 70 ------~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 70 ------VEELLELADYLQIPGLVELCE 90 (90)
T ss_pred ------HHHHHHHHHHHCcHHHHhhhC
Confidence 899999999999999999984
No 28
>smart00061 MATH meprin and TRAF homology.
Probab=99.52 E-value=4.2e-14 Score=109.14 Aligned_cols=89 Identities=21% Similarity=0.379 Sum_probs=72.0
Q ss_pred EEEEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC-----CccceeEEEEEEecCC
Q 015782 26 HKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-----GTDVRALFELTLLDQS 100 (400)
Q Consensus 26 ~~w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~-----~w~v~~~~~~~l~~~~ 100 (400)
++|.|.||+.+. .|+.+.|++|.+||++|+|.+||+ ++|+|+||.|.+. +|++.|+++++|++++
T Consensus 2 ~~~~~~~~~~~~---~~~~~~S~~f~~~g~~W~i~~~p~-------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~ 71 (95)
T smart00061 2 LSHTFKNVSRLE---EGESYFSPSEEHFNIPWRLKIYRK-------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQN 71 (95)
T ss_pred ceeEEEchhhcc---cCceEeCChhEEcCceeEEEEEEc-------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCC
Confidence 579999999873 468899999999999999999999 4689999998653 5899999999999998
Q ss_pred CCCccceecccccccccCCceecccCccccchhhh
Q 015782 101 GKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFF 135 (400)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi 135 (400)
++...+ ...+.|.. ..+|||.+|+
T Consensus 72 ~~~~~~----------~~~~~F~~-~~~~G~~~fi 95 (95)
T smart00061 72 GKSLSK----------KDKHVFEK-PSGWGFSKFI 95 (95)
T ss_pred CCEEee----------eeeEEEcC-CCccceeeEC
Confidence 754311 12355654 6789998875
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.44 E-value=1.6e-12 Score=122.27 Aligned_cols=244 Identities=25% Similarity=0.330 Sum_probs=178.9
Q ss_pred EEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC-CccceeEEEEEEecCCCCCc-c
Q 015782 28 FVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE-GTDVRALFELTLLDQSGKGK-H 105 (400)
Q Consensus 28 w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~-~w~v~~~~~~~l~~~~~~~~-~ 105 (400)
|.|.+|+... ..++|..|..||..|++.+||.|+ ++++|+..... +|.+.+.+.+.+.|+..... .
T Consensus 8 ~~~~~~~~~~-----l~~ys~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~v~n~~~~~~~~ 75 (297)
T KOG1987|consen 8 WVISNFSSVG-----LVIYSNGFVKGGCKWRLSAYPKGN-------YLSLTLSVSDSPGWERYAKLRLTVVNQKSEKYLS 75 (297)
T ss_pred eeeccCcchh-----hhccccceeecCceEEEEEecCCC-------EEEEEEEeccCCCcceeEEEEEEEccCCCcceee
Confidence 9999988775 568899999999999999999974 68888866543 89999999999999976532 1
Q ss_pred ceecccccccccCCceecccCccccchhhhchhhhccCCCCCCCcEEEEEEeeeeeeeeccCCcccccCCCCcHHHHHHH
Q 015782 106 KVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLETSDYLKDDCLKINCTVGVVVSAIDCSRLHSIQVPESDIGAHFGM 185 (400)
Q Consensus 106 ~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~~~~~l~~d~l~i~~~v~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (400)
.....+ ....+..-...||+..+++...+.+.
T Consensus 76 ~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------ 107 (297)
T KOG1987|consen 76 TVEEGF------SWFRFNKVLKEWGFGKMLPLTLLIDC------------------------------------------ 107 (297)
T ss_pred eeeeeE------EeccccccccccCcccccChHHhhcc------------------------------------------
Confidence 110000 00111111345665544433322110
Q ss_pred hhhCCCCCcEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcC
Q 015782 186 LLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVA 264 (400)
Q Consensus 186 l~~~~~~sDv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ 264 (400)
.+..+.+|+.+++++|++|+.|+..+..+. ...+.+.+.++..++.+..|.|...-.....
T Consensus 108 --------------~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~---- 169 (297)
T KOG1987|consen 108 --------------SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVE---- 169 (297)
T ss_pred --------------cCcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHH----
Confidence 044589999999999999999998776655 6677888999999999999999966443322
Q ss_pred CCCCCCCCCchHHHH---HHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH--hHH
Q 015782 265 TPSSSCMSSVSDTLT---AKLLAAADRYGLERLRLMCGSHLCKDISVNSVAKILSLADEHHATELKAVCLRFAAE--NLA 339 (400)
Q Consensus 265 ~~~~~~~~~~~~~~~---~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~--~~~ 339 (400)
.. ..++..|++|+...|+..|...+...+...++...++.+..+....+...|..++.. ++.
T Consensus 170 -------------~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld 236 (297)
T KOG1987|consen 170 -------------RIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLD 236 (297)
T ss_pred -------------HhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhccchHh
Confidence 02 278889999999999999999999988899999999999999999999999999996 777
Q ss_pred HHHcccchhHHHhhChHHHHHHHH
Q 015782 340 AVMRSDGFEYLKENCPSLQSELLK 363 (400)
Q Consensus 340 ~v~~~~~f~~l~~~~p~l~~el~~ 363 (400)
.+....++....+. +++..+...
T Consensus 237 ~l~~~~~~~~~k~~-~~~~~~~~~ 259 (297)
T KOG1987|consen 237 WLEKKLNEVKEKKK-KDLWYEIRL 259 (297)
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHH
Confidence 77765555444433 444444433
No 30
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.6e-12 Score=124.72 Aligned_cols=126 Identities=23% Similarity=0.423 Sum_probs=103.2
Q ss_pred ceeceEEEEEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC--------CccceeE
Q 015782 20 ETVNGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE--------GTDVRAL 91 (400)
Q Consensus 20 ~~~~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~--------~w~v~~~ 91 (400)
+....++.|+|.+|+.+. +++.||+|.+||+.|+|.++|.|++. .+ +|+||...+. .|.|+|+
T Consensus 35 e~~~~sftW~vk~wsel~-----~k~~Sp~F~vg~~twki~lfPqG~nq---~~-~sVyLe~~pqe~e~~~gk~~~ccaq 105 (1089)
T COG5077 35 ELLEMSFTWKVKRWSELA-----KKVESPPFSVGGHTWKIILFPQGNNQ---CN-VSVYLEYEPQELEETGGKYYDCCAQ 105 (1089)
T ss_pred HHhhcccceecCChhhhh-----hhccCCcccccCeeEEEEEecccCCc---cc-cEEEEEeccchhhhhcCcchhhhhh
Confidence 456788999999999987 35789999999999999999999873 22 9999987652 3999999
Q ss_pred EEEEEecCCCCCccceecccccccccCCceecccCccccchhhhchhhhc-----cCCCCCCCcEEEEEEeeeeee
Q 015782 92 FELTLLDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAMLE-----TSDYLKDDCLKINCTVGVVVS 162 (400)
Q Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L~-----~~~~l~~d~l~i~~~v~i~~~ 162 (400)
|.+.|.++..+....+ ++..|+|+....+|||.+|+....|. ...|+.+|.+.|.+.|.|.+.
T Consensus 106 Faf~Is~p~~pti~~i--------N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkd 173 (1089)
T COG5077 106 FAFDISNPKYPTIEYI--------NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKD 173 (1089)
T ss_pred eeeecCCCCCCchhhh--------hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeC
Confidence 9999999876433222 23468899889999999999998882 235899999999999999874
No 31
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.95 E-value=2.3e-09 Score=106.98 Aligned_cols=124 Identities=27% Similarity=0.410 Sum_probs=83.9
Q ss_pred CCCCcHHHHHHHhhhC----CCCCcEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc-------------cceEEEc
Q 015782 174 VPESDIGAHFGMLLDN----AESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-------------KQEIIIS 236 (400)
Q Consensus 174 ~~~~~~~~~l~~l~~~----~~~sDv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-------------~~~i~l~ 236 (400)
++.+.+...+..|+.. ..+.||+|.||++.|+|||+||++||++|+.+|......+ -..|.++
T Consensus 536 ~~ss~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve 615 (1267)
T KOG0783|consen 536 AASSNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE 615 (1267)
T ss_pred cccccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec
Confidence 4566677888888865 4567999999999999999999999999999996543332 2234577
Q ss_pred CCCHHHHHHHhhhhccCCCCCCcccCc-------CCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHH
Q 015782 237 DLEPKVFKAMLHFIYRDTLTEDVDVDV-------ATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGS 300 (400)
Q Consensus 237 ~~~~~~f~~~L~~iYt~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~ 300 (400)
++.+.+|+.+|+||||+....+..+|+ +-..| ..-......-|.-++.+|++..|......
T Consensus 616 ~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N---~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 616 DIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKEN---LSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred cCCHHHHHHHHHHHhcccccCCccccchhhhhccccccC---hhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 899999999999999996543322111 11112 00011123346667777777766554443
No 32
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.55 E-value=1.6e-07 Score=86.38 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=108.2
Q ss_pred eEEeeeehhhhccCHHHHHhhcCccccc-----cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCCCCCCCchH
Q 015782 202 EKFPAHKLVLAARSPIFRSKFFDELEED-----KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSD 276 (400)
Q Consensus 202 ~~f~~hk~iLa~~S~~F~~~f~~~~~e~-----~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~ 276 (400)
.+++||+.+++ |..||+.||.|++.|+ .....++.....+.+..|+|+|+++..+..+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~---------------- 363 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFD---------------- 363 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHH----------------
Confidence 46999999998 8899999999999985 2344566777899999999999998876655
Q ss_pred HHHHHHHHHHhhhChH--h-HHHHHHHHHhcC---CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhHHHHHcccchhHH
Q 015782 277 TLTAKLLAAADRYGLE--R-LRLMCGSHLCKD---ISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSDGFEYL 350 (400)
Q Consensus 277 ~~~~~ll~~A~~~~~~--~-L~~~c~~~l~~~---l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l 350 (400)
.+.+++.+|+++.+. . |+..+...|.+. +..-++.+++.++.......|...+-.|+..|+..+...+++.+.
T Consensus 364 -~A~dvll~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~ 442 (516)
T KOG0511|consen 364 -VASDVLLFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSS 442 (516)
T ss_pred -HHhhHHHHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHH
Confidence 388999999999775 2 566665555553 345578999999999999999999999999999999999998875
No 33
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.54 E-value=8.7e-08 Score=84.43 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=82.5
Q ss_pred CCCCcHHHHHHHhhhCCCCCcEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc---cceEEEcCCCHHHHHHHhhhh
Q 015782 174 VPESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFI 250 (400)
Q Consensus 174 ~~~~~~~~~l~~l~~~~~~sDv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~---~~~i~l~~~~~~~f~~~L~~i 250 (400)
.|..++.+++...++.....|+-|+.....|+|||++|++|||+|+.+........ .-.|..-+++.++|+++|+|+
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l 191 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSL 191 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999986543222 445666689999999999999
Q ss_pred ccCCCCCCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChH
Q 015782 251 YRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLE 292 (400)
Q Consensus 251 Yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~ 292 (400)
|+|++-..+ +..+| ..-|-.+..-|+..
T Consensus 192 ~tgEfgmEd----~~fqn----------~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 192 ITGEFGMED----LGFQN----------SDILEQLCEDFGCF 219 (401)
T ss_pred Hhcccchhh----cCCch----------HHHHHHHHHhhCCc
Confidence 999986543 33344 44555566666653
No 34
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.36 E-value=2.5e-06 Score=75.08 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=80.5
Q ss_pred EEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc---cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCCCCC
Q 015782 195 ITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCM 271 (400)
Q Consensus 195 v~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~---~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~ 271 (400)
|.+.|||..|..++.-|.....+|++|+...+.-. +..|-| |-+|..|..+|+||-.|.+..+..
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~----------- 74 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPES----------- 74 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccc-----------
Confidence 56889999999999999999999999998876422 455666 679999999999999888775443
Q ss_pred CCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcC
Q 015782 272 SSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKD 305 (400)
Q Consensus 272 ~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 305 (400)
...+.+|+.-|.+|.+++|.++|+..|...
T Consensus 75 ----~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 75 ----EKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred ----hHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 334899999999999999999999987654
No 35
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.30 E-value=8.5e-07 Score=78.30 Aligned_cols=138 Identities=23% Similarity=0.348 Sum_probs=90.9
Q ss_pred CcHHHHHHHhhhCCCCCcE-EEEe-CC--------------eEEeeeehhhhccCHHHHHhhcCccccc----------c
Q 015782 177 SDIGAHFGMLLDNAESSDI-TFDV-AG--------------EKFPAHKLVLAARSPIFRSKFFDELEED----------K 230 (400)
Q Consensus 177 ~~~~~~l~~l~~~~~~sDv-~l~v-~~--------------~~f~~hk~iLa~~S~~F~~~f~~~~~e~----------~ 230 (400)
..+..++..|++..-..|+ ++.+ +| +++.||+.|.++||++||.++.....+. .
T Consensus 220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~P 299 (401)
T KOG2838|consen 220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRP 299 (401)
T ss_pred hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCC
Confidence 4455677777776544444 4433 22 4799999999999999999996544332 2
Q ss_pred ceEEEcC-CCHHHH-HHHhhhhccCCCCCCccc---CcCCCC-------C-CCCCCchHHHHHHHHHHHhhhChHhHHHH
Q 015782 231 QEIIISD-LEPKVF-KAMLHFIYRDTLTEDVDV---DVATPS-------S-SCMSSVSDTLTAKLLAAADRYGLERLRLM 297 (400)
Q Consensus 231 ~~i~l~~-~~~~~f-~~~L~~iYt~~~~~~~~~---~~~~~~-------~-~~~~~~~~~~~~~ll~~A~~~~~~~L~~~ 297 (400)
..|.+.+ +=|.+| -.+|+++||+.+...... +.+..- | +.+.......+++|+.+|-.|+++.|.+.
T Consensus 300 kRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa 379 (401)
T KOG2838|consen 300 KRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQA 379 (401)
T ss_pred ceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 344554 467899999987654321 000000 0 13334566778999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHH
Q 015782 298 CGSHLCKDISVNSVAKI 314 (400)
Q Consensus 298 c~~~l~~~l~~~n~~~~ 314 (400)
|+..+......+++..+
T Consensus 380 ~e~Vir~acaadlsn~c 396 (401)
T KOG2838|consen 380 CEDVIRKACAADLSNGC 396 (401)
T ss_pred HHHHHHhhhhhhccccc
Confidence 99999876655554433
No 36
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.98 E-value=1.6e-05 Score=61.03 Aligned_cols=87 Identities=25% Similarity=0.465 Sum_probs=65.7
Q ss_pred EEEEeCCeEEeeeehhhh-ccCHHHHHhhcCc---cccc-cceEEEcCCCHHHHHHHhhhhcc-CCCCCCcccCcCCCCC
Q 015782 195 ITFDVAGEKFPAHKLVLA-ARSPIFRSKFFDE---LEED-KQEIIISDLEPKVFKAMLHFIYR-DTLTEDVDVDVATPSS 268 (400)
Q Consensus 195 v~l~v~~~~f~~hk~iLa-~~S~~F~~~f~~~---~~e~-~~~i~l~~~~~~~f~~~L~~iYt-~~~~~~~~~~~~~~~~ 268 (400)
|.|.|||+.|.+-+..|. ....+|.+|+.++ .... ..++-| |-++..|+.+|+|+.+ +.++..... .
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~------~ 73 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEI------C 73 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-------
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCch------h
Confidence 678999999999999998 5567999999865 2222 566666 6899999999999999 666543221 1
Q ss_pred CCCCCchHHHHHHHHHHHhhhChHhH-HHHH
Q 015782 269 SCMSSVSDTLTAKLLAAADRYGLERL-RLMC 298 (400)
Q Consensus 269 ~~~~~~~~~~~~~ll~~A~~~~~~~L-~~~c 298 (400)
...+++-|++|+++.| .+.|
T Consensus 74 ----------~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 74 ----------LEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp ----------HHHHHHHHHHHT-HHHHBHHC
T ss_pred ----------HHHHHHHHHHcCCCccccCCC
Confidence 8899999999999998 6655
No 37
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.52 E-value=0.00077 Score=50.11 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=61.7
Q ss_pred EEEEe-CCeEEeeeehhhhccCHHHHHhhcCccccc---cceEEEcCCCHHHHHHHhhhh-----ccCC-CCCCcccCcC
Q 015782 195 ITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFI-----YRDT-LTEDVDVDVA 264 (400)
Q Consensus 195 v~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~---~~~i~l~~~~~~~f~~~L~~i-----Yt~~-~~~~~~~~~~ 264 (400)
|+++. +|..|-..|. +|.-|+-.|+||.|+...+ .+++.+++++...++.+.+|+ |++. ..+..-
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF---- 93 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEF---- 93 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCC----
Confidence 44554 4566666665 4567999999999887665 788999999999999999998 4444 111111
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhhCh
Q 015782 265 TPSSSCMSSVSDTLTAKLLAAADRYGL 291 (400)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ll~~A~~~~~ 291 (400)
+...+++++||.+|+++++
T Consensus 94 --------~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 94 --------DIPPEMALELLMAANYLEC 112 (112)
T ss_pred --------CCCHHHHHHHHHHhhhhcC
Confidence 2346789999999998763
No 38
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.03 E-value=0.00084 Score=61.94 Aligned_cols=87 Identities=17% Similarity=0.282 Sum_probs=71.7
Q ss_pred eEEeeeehhhhccCHHHHHhhcCccccc--cceEEEc-CCCHHHHHHHhhhhccCCCCCCcccCcCCCCCCCCCCchHHH
Q 015782 202 EKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIIS-DLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTL 278 (400)
Q Consensus 202 ~~f~~hk~iLa~~S~~F~~~f~~~~~e~--~~~i~l~-~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (400)
+.|.|.+.+|...=.||+..+.....++ ..+|+|. .-|..+|+-+++|+....-. ++..|
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~-------l~~~N---------- 76 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPS-------LTPSN---------- 76 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCc-------CCcCc----------
Confidence 6899999999999999999996533333 4556665 67889999999999994433 55557
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHhcC
Q 015782 279 TAKLLAAADRYGLERLRLMCGSHLCKD 305 (400)
Q Consensus 279 ~~~ll~~A~~~~~~~L~~~c~~~l~~~ 305 (400)
+..+|.-|++++|+.|.+.|..|+..+
T Consensus 77 vvsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 77 VVSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred EEEeEehhhhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999998654
No 39
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.02 E-value=0.0012 Score=51.12 Aligned_cols=70 Identities=26% Similarity=0.318 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhHHHHHcccchhHHHhhChHHHHHHHHHhhcccccCCCCCCcchhhhhhccCC
Q 015782 311 VAKILSLADEHHATELKAVCLRFAAENLAAVMRSDGFEYLKENCPSLQSELLKTVAGCEEDCSSGGKSRSVWAQLSDGG 389 (400)
Q Consensus 311 ~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~p~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (400)
|+.++.+|..|++..|.+.|.+||..|+.++.++++|.+|+ .+.+..++..+.... ..+..++..+-.++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~-------~~~l~~iL~~~~l~v--~~E~~v~~av~~W~ 70 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELP-------FDQLIEILSSDDLNV--SSEDDVFEAVLRWL 70 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS--------HHHHHHHHHTSS--E--CTCCCHHHHHHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCC-------HHHHHHHHhcccccc--ccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999887 334444554433322 23344555544444
No 40
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0012 Score=72.45 Aligned_cols=168 Identities=14% Similarity=0.150 Sum_probs=112.4
Q ss_pred ceEEEEEEcCccccccCCCCCeEeeceeeecCeEEEEEEecCCCCCCCCCCeEEEEEEEecC----CccceeEEEEEEec
Q 015782 23 NGSHKFVIQGYSLAKGMGIGKHIASDNFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALANE----GTDVRALFELTLLD 98 (400)
Q Consensus 23 ~~~~~w~I~nfs~~~~~~~~~~~~S~~f~~gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~----~w~v~~~~~~~l~~ 98 (400)
....+|...+..... ....|+.|..|+.+|++.+.|+|+. ...++.|+.|... .|.+.+.+.+.+.|
T Consensus 26 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~ 96 (1093)
T KOG1863|consen 26 NQSTTIDGIDDKSLL-----YRALSSNFGAGATKWKILIAPKVNS----LQSTRKKLEVMPSQSLKSWSCGAQAVLRVKN 96 (1093)
T ss_pred cccccccCcCcchhh-----hHhcCccccccccceeeeeccccCc----ccceeEEeeeccCCCCcceEecchhhhcccc
Confidence 344446666554444 2466899999999999999999874 4669999999763 29999999999999
Q ss_pred CCCCCccceecccccccccCCceecccCccccchhhhchhhh--ccCCCCCCCcEEEEEEeeeee-eeeccCCcccccCC
Q 015782 99 QSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDYLKDDCLKINCTVGVVV-SAIDCSRLHSIQVP 175 (400)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~wG~~~fi~~~~L--~~~~~l~~d~l~i~~~v~i~~-~~~~~~~~~~~~~~ 175 (400)
..+...... ....|.|.....+||+.+|..|+++ ...+|+.+|.+.+++.|.+.. ....
T Consensus 97 -~~~~~~~~~-------~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~---------- 158 (1093)
T KOG1863|consen 97 -TIDNLPDPE-------KAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLM---------- 158 (1093)
T ss_pred -CCCCchhhh-------hhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCccc----------
Confidence 333321111 1134677777889999999999999 357899999999999998764 1110
Q ss_pred CCcHHHHHHHhhhCCCCCcEEEEeCCeEEeeeehhhhcc-CHHHHHhhcC
Q 015782 176 ESDIGAHFGMLLDNAESSDITFDVAGEKFPAHKLVLAAR-SPIFRSKFFD 224 (400)
Q Consensus 176 ~~~~~~~l~~l~~~~~~sDv~l~v~~~~f~~hk~iLa~~-S~~F~~~f~~ 224 (400)
.... ........|-+.=.|-+.++...+-+-- =+.||..+..
T Consensus 159 -----~~~d--~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~ 201 (1093)
T KOG1863|consen 159 -----NPYD--SKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYS 201 (1093)
T ss_pred -----chhh--hhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhc
Confidence 0000 0112233455655677777777665432 2456666543
No 41
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.59 E-value=0.0078 Score=57.23 Aligned_cols=87 Identities=20% Similarity=0.281 Sum_probs=67.0
Q ss_pred cEEEEeCCeEEeeeehhhhccC--HHHHHhhcCccccc--cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCCC
Q 015782 194 DITFDVAGEKFPAHKLVLAARS--PIFRSKFFDELEED--KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSS 269 (400)
Q Consensus 194 Dv~l~v~~~~f~~hk~iLa~~S--~~F~~~f~~~~~e~--~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~ 269 (400)
=|.|.|||+.|...+.-|+... .+|.+++.+.+.-. .....+-|-+|+.|..+|+|+-||.++..... .
T Consensus 12 ~V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~------~- 84 (465)
T KOG2714|consen 12 RVKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVF------P- 84 (465)
T ss_pred eEEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCc------h-
Confidence 3678999999999999997655 79999998877655 22223347899999999999999999874431 0
Q ss_pred CCCCchHHHHHHHHHHHhhhChHhHHH
Q 015782 270 CMSSVSDTLTAKLLAAADRYGLERLRL 296 (400)
Q Consensus 270 ~~~~~~~~~~~~ll~~A~~~~~~~L~~ 296 (400)
...|..-|.+|++..|.+
T Consensus 85 ---------~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 85 ---------ERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred ---------hhhhhhhhhhcCcHHHHH
Confidence 234444899999998766
No 42
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.51 E-value=0.012 Score=51.07 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=74.1
Q ss_pred cEEEEeCCeEEeeeehhhhccCH--HHHHhhcCcc--ccc-cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCC
Q 015782 194 DITFDVAGEKFPAHKLVLAARSP--IFRSKFFDEL--EED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSS 268 (400)
Q Consensus 194 Dv~l~v~~~~f~~hk~iLa~~S~--~F~~~f~~~~--~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~ 268 (400)
=|.+.+||+.|......|..+-| -..+||.+.- .+. ..-..+-|-++..|+.+|.|+..|.++...+ -+
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~------i~ 83 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSD------ID 83 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCC------cc
Confidence 46788999999998888877754 6788886543 222 5556666889999999999999999986544 23
Q ss_pred CCCCCchHHHHHHHHHHHhhhChHhHHHHHHHH
Q 015782 269 SCMSSVSDTLTAKLLAAADRYGLERLRLMCGSH 301 (400)
Q Consensus 269 ~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~ 301 (400)
+..+|+.|++|++-.|++..++.
T Consensus 84 ----------~lgvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 84 ----------CLGVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred ----------HHHHHHHhhHHhhHhHHhHHhhh
Confidence 89999999999999999998883
No 43
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.50 E-value=0.012 Score=45.86 Aligned_cols=59 Identities=17% Similarity=0.278 Sum_probs=46.7
Q ss_pred EEEEe-CCeEEeeeehhhhccCHHHHHhhcCccccc--cceEEEcCCCHHHHHHHhhhhccCC
Q 015782 195 ITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEED--KQEIIISDLEPKVFKAMLHFIYRDT 254 (400)
Q Consensus 195 v~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~--~~~i~l~~~~~~~f~~~L~~iYt~~ 254 (400)
++|+. +|..|.+.+.+.. .|..++.|+.+...+. ...|++++++..+++.+++|++.-.
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~ 65 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHV 65 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcc
Confidence 45554 7889999999774 8999999996543322 3589999999999999999996543
No 44
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.47 E-value=0.007 Score=46.44 Aligned_cols=69 Identities=22% Similarity=0.195 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhHHHHHcccchhHHHhhChHHHHHHHHHhhcccccCCCCCCcchhhhhhccCC
Q 015782 312 AKILSLADEHHATELKAVCLRFAAENLAAVMRSDGFEYLKENCPSLQSELLKTVAGCEEDCSSGGKSRSVWAQLSDGG 389 (400)
Q Consensus 312 ~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~~~p~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (400)
+.++.+|..|++..|.+.|.+||..|+..+.++++|..|+ .+.+..++..+...... +..+|..+-.+.
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~-------~~~l~~iL~~d~l~v~~--E~~v~~av~~W~ 70 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELS-------LEQLLSLLSSDDLNVPS--EEEVFEAVLRWV 70 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCC-------HHHHHHHhCcccCCCCC--HHHHHHHHHHHH
Confidence 5678899999999999999999999999999999998886 33444455444433222 344455444333
No 45
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.35 E-value=0.0027 Score=61.75 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=64.8
Q ss_pred eeceEEEEEEcCccccccC---CCCCeEeeceeee--cCeEEEEEEecCCCCCCCCCCeEEEEEEEecC------Cccce
Q 015782 21 TVNGSHKFVIQGYSLAKGM---GIGKHIASDNFTV--GGYQWAIYFYPDGKNPEDNSAYVSVFIALANE------GTDVR 89 (400)
Q Consensus 21 ~~~~~~~w~I~nfs~~~~~---~~~~~~~S~~f~~--gg~~W~l~lyp~g~~~~~~~~~lsl~L~~~~~------~w~v~ 89 (400)
...|++.|+|.++...+.. ..+..+.|+.|+. .||+.+.++|-||++ .+.+.++|+|+....+ .|+++
T Consensus 277 ~~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~~~~~~lng~g-~~~~~~~s~~~~~~~ge~d~~l~wpf~ 355 (391)
T KOG0297|consen 277 SYDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKLCARIYLNGDG-TGKGTHLSLYFVVMRGEYDALLPWPFR 355 (391)
T ss_pred ccCCEEEEEecchhhhhHHHHhccCccccccccccccccHHHHhHhhhcCCC-CCCcceeeeeeeecccCcccccccCCC
Confidence 4679999999999544431 3456789999984 699999999999988 4578999999988764 39999
Q ss_pred eEEEEEEecC
Q 015782 90 ALFELTLLDQ 99 (400)
Q Consensus 90 ~~~~~~l~~~ 99 (400)
-++++.+++|
T Consensus 356 ~~v~~~l~dq 365 (391)
T KOG0297|consen 356 QKVTLMLLDQ 365 (391)
T ss_pred CceEEEEecc
Confidence 9999999999
No 46
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.29 E-value=0.02 Score=40.01 Aligned_cols=56 Identities=14% Similarity=0.319 Sum_probs=43.9
Q ss_pred EEEEe-CCeEEeeeehhhhccCHHHHHhhcCccccccceEEEcCCCHHHHHHHhhhhcc
Q 015782 195 ITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYR 252 (400)
Q Consensus 195 v~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~L~~iYt 252 (400)
|+|+. +|+.|.+.+.++. .|..++.|+.+...+.. .|.+++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~-~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE-PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT-EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc-ccccCccCHHHHHHHHHHHHh
Confidence 44544 7899999998877 89999999965322223 799999999999999999964
No 47
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.05 E-value=0.011 Score=55.22 Aligned_cols=101 Identities=28% Similarity=0.301 Sum_probs=69.7
Q ss_pred HHHHHhhhCCC---CCcEEEEe-CCeEEeeeehhhhccCHHHHHhhcCccccccceEEEcCCCHHHHHHHhhhhccCCCC
Q 015782 181 AHFGMLLDNAE---SSDITFDV-AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLT 256 (400)
Q Consensus 181 ~~l~~l~~~~~---~sDv~l~v-~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~L~~iYt~~~~ 256 (400)
.++..++.+.. ..|+++.. .|..|-|||.+|++||.+|..-+...+. +..+|+-..+-+.+|..+|+|+|-..-.
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~-~~heI~~~~v~~~~f~~flk~lyl~~na 213 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV-QGHEIEAHRVILSAFSPFLKQLYLNTNA 213 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc-ccCchhhhhhhHhhhhHHHHHHHHhhhh
Confidence 45555565543 36888876 5778999999999999988654432211 1345555567789999999999986322
Q ss_pred CCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHH
Q 015782 257 EDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCG 299 (400)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~ 299 (400)
.- .....+|+.+..+|+++.|....+
T Consensus 214 ~~-----------------~~qynallsi~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 214 EW-----------------KDQYNALLSIEVKFSKEKLSLEIS 239 (516)
T ss_pred hh-----------------hhHHHHHHhhhhhccHHHhHHHHh
Confidence 11 122689999999999988765443
No 48
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=95.62 E-value=0.0089 Score=55.83 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=119.4
Q ss_pred cEEEEeCCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCCCCCC
Q 015782 194 DITFDVAGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMS 272 (400)
Q Consensus 194 Dv~l~v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 272 (400)
|.++...+..+.+|+.+|...|+.|..+....-..+ ...+.+..+...++..+.+++|.. ++..
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~-------------- 92 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKH-------------- 92 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhh--------------
Confidence 444445667899999999999999998886652233 677888888999999999999988 3221
Q ss_pred CchHHHHHHHHHHHhhhChHhHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhHHHHHcccchhHHH
Q 015782 273 SVSDTLTAKLLAAADRYGLERLRLMCGSHLCK-DISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSDGFEYLK 351 (400)
Q Consensus 273 ~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~-~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~ 351 (400)
....+...++.+...|.++.++..|...+.. .++..++...+..+..+....|...+...+...+....+++.+....
T Consensus 93 -e~~~~~ihll~~~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~ 171 (319)
T KOG1778|consen 93 -EMVFFDIHLLALSHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYT 171 (319)
T ss_pred -HHHHHHHHHHhhhhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeee
Confidence 2345678888888999999999999988865 56888999999999999999999999999999999999988877665
Q ss_pred hhChHH
Q 015782 352 ENCPSL 357 (400)
Q Consensus 352 ~~~p~l 357 (400)
...+.+
T Consensus 172 c~~c~~ 177 (319)
T KOG1778|consen 172 CPICKL 177 (319)
T ss_pred cCcccc
Confidence 544443
No 49
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.30 E-value=0.084 Score=43.78 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=73.7
Q ss_pred CcEEEEeCCeEEeeeehhhhccCH-HHHHhhcCccc---cc-cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCC
Q 015782 193 SDITFDVAGEKFPAHKLVLAARSP-IFRSKFFDELE---ED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPS 267 (400)
Q Consensus 193 sDv~l~v~~~~f~~hk~iLa~~S~-~F~~~f~~~~~---e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~ 267 (400)
.=|.|.|||..|-.-|..|..-+. |...++...+. .. ..--.+-|-+|.-|.-+|+|+-.|.+..+.-.
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~------ 94 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLS------ 94 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhh------
Confidence 346778899999999999998885 44555544321 11 34456668899999999999999998765431
Q ss_pred CCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcC
Q 015782 268 SSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKD 305 (400)
Q Consensus 268 ~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 305 (400)
-..+|.-|+.|.++.|.++..+.|...
T Consensus 95 -----------eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 95 -----------EEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred -----------hhccchhhhccCChHHHHHHHHHHHHH
Confidence 467899999999999999988888654
No 50
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.075 Score=44.67 Aligned_cols=114 Identities=14% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCeEEeeeehhhhccCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcC--CCCCC------C
Q 015782 200 AGEKFPAHKLVLAARSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVA--TPSSS------C 270 (400)
Q Consensus 200 ~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~--~~~~~------~ 270 (400)
+|+.|.+-..++. .|..+.+++...-... ...|+|+.+...+|..+|+|++.-.-......+.- ..... .
T Consensus 13 DG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~ 91 (162)
T KOG1724|consen 13 DGEIFEVEEEVAR-QSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAE 91 (162)
T ss_pred CCceeehhHHHHH-HhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHH
Confidence 6888888887765 7888888874321111 24799999999999999999988442211100000 00000 0
Q ss_pred CCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCC---CHHHHHHH
Q 015782 271 MSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDI---SVNSVAKI 314 (400)
Q Consensus 271 ~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l---~~~n~~~~ 314 (400)
.-......+.+|+.+|+++++++|...|.+.+...+ +++....+
T Consensus 92 Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~ 138 (162)
T KOG1724|consen 92 FLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREI 138 (162)
T ss_pred HHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 000223468999999999999999999999876543 45544443
No 51
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.62 Score=36.93 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=72.7
Q ss_pred cEEEE-eCCeEEeeeehhhhccCHHHHHhhcCccccccceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCCCCCC
Q 015782 194 DITFD-VAGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMS 272 (400)
Q Consensus 194 Dv~l~-v~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~ 272 (400)
-+.++ .+|+.|.+.+.+ |-+|-..+.|+... .+....|.++.+....|+.+++|+-...-....+.+++.--.+.+.
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDS-TACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccc-cccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 34454 467888887754 55788888877432 1124557888999999999999996654433333211211111222
Q ss_pred C--------chHHHHHHHHHHHhhhChHhHHHHHHHHHhcCC
Q 015782 273 S--------VSDTLTAKLLAAADRYGLERLRLMCGSHLCKDI 306 (400)
Q Consensus 273 ~--------~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 306 (400)
. ....++.++..+|++++++.|.+.|++.+.+.+
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 2 223567888889999999999999999876543
No 52
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=88.76 E-value=0.69 Score=33.84 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhChHhHHHHHHHHHhcC---CCHHHHHHHHHHHHHcC
Q 015782 277 TLTAKLLAAADRYGLERLRLMCGSHLCKD---ISVNSVAKILSLADEHH 322 (400)
Q Consensus 277 ~~~~~ll~~A~~~~~~~L~~~c~~~l~~~---l~~~n~~~~l~~a~~~~ 322 (400)
..+.+|+.+|++++++.|.+.|...+... .+++.+..++.+...+.
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 45999999999999999999999987654 35566666665555544
No 53
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=87.68 E-value=1.2 Score=43.55 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhHHHHHcccchhHHHh-----hChHHHHHHHHHhhccc
Q 015782 306 ISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSDGFEYLKE-----NCPSLQSELLKTVAGCE 369 (400)
Q Consensus 306 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~f~~l~~-----~~p~l~~el~~~~~~~~ 369 (400)
+..+|++.++..|.+|..+.|.+.|++||..+ ++...+|.+|.+ +.|+++.-.++.+...-
T Consensus 185 ~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~---l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~ 250 (521)
T KOG2075|consen 185 LAADTVITTLYAAKKYLVPALERQCVKFLRKN---LMADNAFLELFQRAKLFDEPSLISICLEVIDKSF 250 (521)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---cCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHH
Confidence 57899999999999999999999999999977 455667777766 57888777776665443
No 54
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=84.82 E-value=3.2 Score=36.72 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=61.9
Q ss_pred CCcE-EEEeCCeEEeeeehhh-hccCHHHHHhhcCccccc---cceEEEcCCCHHHHHHHhhhhccCCCCCCcccCcCCC
Q 015782 192 SSDI-TFDVAGEKFPAHKLVL-AARSPIFRSKFFDELEED---KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDVDVATP 266 (400)
Q Consensus 192 ~sDv-~l~v~~~~f~~hk~iL-a~~S~~F~~~f~~~~~e~---~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~ 266 (400)
+.|+ .+-|||+.|..-..-| +-.-....+||.+...-. .....| |-+-..|+.+|.|+-+........
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~------ 79 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPED------ 79 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchh------
Confidence 4454 4667777776655534 334556677777633222 333333 567789999999999955444332
Q ss_pred CCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHH
Q 015782 267 SSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHL 302 (400)
Q Consensus 267 ~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l 302 (400)
......|+..|++|+++.+..++.+-.
T Consensus 80 ---------f~e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 80 ---------FAEVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred ---------hhhHHHHHHHHHHHccccHHHHHhccc
Confidence 122889999999999998877665543
No 55
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=79.69 E-value=4.1 Score=30.96 Aligned_cols=59 Identities=25% Similarity=0.424 Sum_probs=39.2
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHhcCC------------CHHHHHHHHHHHHH--cCchHHHHHHHHHHHHhH
Q 015782 280 AKLLAAADRYGLERLRLMCGSHLCKDI------------SVNSVAKILSLADE--HHATELKAVCLRFAAENL 338 (400)
Q Consensus 280 ~~ll~~A~~~~~~~L~~~c~~~l~~~l------------~~~n~~~~l~~a~~--~~~~~L~~~~~~~i~~~~ 338 (400)
.+++.+|..|+++.|...|.+++..+. +.+.+..++.--.. .+-..+-+.++.++..+.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 578999999999999999999987652 33334444432222 233567788888887554
No 56
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=74.87 E-value=7.6 Score=35.79 Aligned_cols=86 Identities=15% Similarity=0.261 Sum_probs=61.4
Q ss_pred CCCcEEEEeCCeEEeeeehhhhccC-HHHHHhhcCccccc----cceEEEc-CCCHHHHHHHhhhhccCCCCCCcccCcC
Q 015782 191 ESSDITFDVAGEKFPAHKLVLAARS-PIFRSKFFDELEED----KQEIIIS-DLEPKVFKAMLHFIYRDTLTEDVDVDVA 264 (400)
Q Consensus 191 ~~sDv~l~v~~~~f~~hk~iLa~~S-~~F~~~f~~~~~e~----~~~i~l~-~~~~~~f~~~L~~iYt~~~~~~~~~~~~ 264 (400)
..--++..+++..|-+.+.+|.+.- .-.-.||.+++.-. ..+.++. +++..+|+++|+|--+|.+.-... +
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~---v 170 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSS---V 170 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCC---C
Confidence 3446788899999999999997543 34456666554322 5666665 799999999999999998765443 1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhhChH
Q 015782 265 TPSSSCMSSVSDTLTAKLLAAADRYGLE 292 (400)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ll~~A~~~~~~ 292 (400)
+ +.+|-++.|++.++
T Consensus 171 S-------------vpELrEACDYLlip 185 (438)
T KOG3840|consen 171 S-------------VSELREACDYLLVP 185 (438)
T ss_pred c-------------hHHHHhhcceEEee
Confidence 1 77788888877663
No 57
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=68.02 E-value=3 Score=38.93 Aligned_cols=41 Identities=17% Similarity=0.381 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhHHHHHccc
Q 015782 305 DISVNSVAKILSLADEHHATELKAVCLRFAAENLAAVMRSD 345 (400)
Q Consensus 305 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~ 345 (400)
.++++|++.++.-+.....+.|.+.|+.|+..|+.+|+.++
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 57999999999999999999999999999999999999764
No 58
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=64.62 E-value=9.4 Score=29.27 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Q 015782 307 SVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (400)
Q Consensus 307 ~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (400)
..+++..++.+|..++.+.|...|.+++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 3788999999999999999999999999876
No 59
>PHA03098 kelch-like protein; Provisional
Probab=49.37 E-value=50 Score=33.58 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Q 015782 306 ISVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (400)
Q Consensus 306 l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (400)
++.+|+.+++..|..+..+.|+..|.+|+..+
T Consensus 73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~ 104 (534)
T PHA03098 73 ITSNNVKDILSIANYLIIDFLINLCINYIIKI 104 (534)
T ss_pred EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999854
No 60
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=42.14 E-value=50 Score=26.15 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=38.1
Q ss_pred CCeEEeeeehhhhccCHHHHHhhcCccccccceEEEc-CC--CHHHHHHHhhhhccCCCCCCcc
Q 015782 200 AGEKFPAHKLVLAARSPIFRSKFFDELEEDKQEIIIS-DL--EPKVFKAMLHFIYRDTLTEDVD 260 (400)
Q Consensus 200 ~~~~f~~hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~-~~--~~~~f~~~L~~iYt~~~~~~~~ 260 (400)
++..+.||-.+++.+||...+.=. ...-+-..+..| |+ -.+.....|+++|.|.-...-.
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~~f-~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s~~~efk 82 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKKKF-IIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDSKIEEFK 82 (117)
T ss_pred CCCEEEEEEEEEECCChHHheEEE-EEeccCCCeECCcccCcHHHHHHHHHHHHhCCCCccccc
Confidence 467999999999999998754210 001111112222 22 2478999999999997655444
No 61
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=34.89 E-value=2.3e+02 Score=22.54 Aligned_cols=77 Identities=8% Similarity=0.049 Sum_probs=54.9
Q ss_pred EEcCCCHHHHHHHhhhhccCCCCCCcccCcCCCCCCCCCCchHHHHHHHHHHHhhhChHhHHHHHHHHHhcCCCHHHHHH
Q 015782 234 IISDLEPKVFKAMLHFIYRDTLTEDVDVDVATPSSSCMSSVSDTLTAKLLAAADRYGLERLRLMCGSHLCKDISVNSVAK 313 (400)
Q Consensus 234 ~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~ 313 (400)
.+.+++|+..+.+.+|.|.+-+.-..- +.....+..|-.+|-.=+.+.|+......|...++++.+.+
T Consensus 27 ~~~~~~p~~~~~~~~~~fgdv~~r~~L------------d~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~E 94 (123)
T TIGR02425 27 ATTDFDQPFQELITEYAWGTVWTRPGL------------TKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKE 94 (123)
T ss_pred cccccCHHHHHHHHHHHhhhhhccCCC------------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356788999999999999876654322 12334455555555555567788888888888889999988
Q ss_pred HHHHHHHcC
Q 015782 314 ILSLADEHH 322 (400)
Q Consensus 314 ~l~~a~~~~ 322 (400)
++..+..|.
T Consensus 95 vl~q~~~y~ 103 (123)
T TIGR02425 95 VLLHVAIYA 103 (123)
T ss_pred HHHHHHHhC
Confidence 888887774
No 62
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=33.59 E-value=43 Score=24.81 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHhhhChHhHHHHHHHHHhcC
Q 015782 280 AKLLAAADRYGLERLRLMCGSHLCKD 305 (400)
Q Consensus 280 ~~ll~~A~~~~~~~L~~~c~~~l~~~ 305 (400)
.+++.+|+.|+.+.|...|.+++.++
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 35778899999999999999998764
No 63
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=32.29 E-value=27 Score=19.26 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=7.9
Q ss_pred CCCCCCCCCCC
Q 015782 1 MTNSSPSPLVS 11 (400)
Q Consensus 1 ~~~~~~~~~~~ 11 (400)
||+|.|.+|++
T Consensus 1 masstpaspap 11 (29)
T PF05570_consen 1 MASSTPASPAP 11 (29)
T ss_pred CCcCCCCCCCc
Confidence 77777777666
No 64
>PHA02713 hypothetical protein; Provisional
Probab=32.00 E-value=55 Score=33.69 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Q 015782 305 DISVNSVAKILSLADEHHATELKAVCLRFAAEN 337 (400)
Q Consensus 305 ~l~~~n~~~~l~~a~~~~~~~L~~~~~~~i~~~ 337 (400)
.++.+|+.++|..|..+..+.|++.|.+|+..+
T Consensus 90 ~i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~ 122 (557)
T PHA02713 90 HISSMNVIDVLKCADYLLIDDLVTDCESYIKDY 122 (557)
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhh
Confidence 378999999999999999999999999999854
No 65
>PHA02790 Kelch-like protein; Provisional
Probab=30.76 E-value=54 Score=33.01 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHhcCC
Q 015782 279 TAKLLAAADRYGLERLRLMCGSHLCKDI 306 (400)
Q Consensus 279 ~~~ll~~A~~~~~~~L~~~c~~~l~~~l 306 (400)
..+++.+|+.|+++.|+..+.+++.++.
T Consensus 125 Cl~i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 125 CVECYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999988753
No 66
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.49 E-value=46 Score=32.19 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=48.4
Q ss_pred cCHHHHHhhcCccccc-cceEEEcCCCHHHHHHHhhhhccCCCCCCccc------CcCCCCCCCCCCchHHHHHHHHHHH
Q 015782 214 RSPIFRSKFFDELEED-KQEIIISDLEPKVFKAMLHFIYRDTLTEDVDV------DVATPSSSCMSSVSDTLTAKLLAAA 286 (400)
Q Consensus 214 ~S~~F~~~f~~~~~e~-~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ll~~A 286 (400)
.+.-|+.++. -- +..+.+.+++.+.+-.+|.....-.++..... ..+..+| +..++.+|
T Consensus 92 ~~eAF~~lLr----YiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~N----------vCmifdaA 157 (620)
T KOG4350|consen 92 NSEAFRALLR----YIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNEN----------VCMIFDAA 157 (620)
T ss_pred cHHHHHHHHH----HHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccc----------eeeeeeHH
Confidence 3566777662 12 45678888877776666654433222211100 0122334 66678899
Q ss_pred hhhChHhHHHHHHHHHhcC
Q 015782 287 DRYGLERLRLMCGSHLCKD 305 (400)
Q Consensus 287 ~~~~~~~L~~~c~~~l~~~ 305 (400)
..|+++.|.+.|..|+-++
T Consensus 158 ~ly~l~~Lt~~C~mfmDrn 176 (620)
T KOG4350|consen 158 YLYQLTDLTDYCMMFMDRN 176 (620)
T ss_pred HHhcchHHHHHHHHHHhcC
Confidence 9999999999999987553
No 67
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=26.52 E-value=1.5e+02 Score=22.76 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=38.0
Q ss_pred cEEEEeCC--eEEeeeehhhhccCHHHHHhhcCccccc----cceEEEcCCCHHHHHHHhhhh
Q 015782 194 DITFDVAG--EKFPAHKLVLAARSPIFRSKFFDELEED----KQEIIISDLEPKVFKAMLHFI 250 (400)
Q Consensus 194 Dv~l~v~~--~~f~~hk~iLa~~S~~F~~~f~~~~~e~----~~~i~l~~~~~~~f~~~L~~i 250 (400)
-+.+.||+ ++|-++...|. .|.|+.++...-.|- ...|.|+ .+...|+.+|..|
T Consensus 40 ~~~VyVG~~~~Rfvvp~~~L~--hp~f~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~~l~~l 99 (100)
T PF02519_consen 40 HFAVYVGEERRRFVVPVSYLN--HPLFQELLEQAEEEFGFDQDGPLTIP-CDVVLFEHLLWLL 99 (100)
T ss_pred eEEEEeCccceEEEechHHcC--chhHHHHHHHHhhhcCcCCCCcEEee-CCHHHHHHHHHHh
Confidence 35666665 57888887776 589999995433321 5567776 7888898888764
No 68
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=24.49 E-value=58 Score=31.57 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhChHhHHHHHHHHHhcC
Q 015782 279 TAKLLAAADRYGLERLRLMCGSHLCKD 305 (400)
Q Consensus 279 ~~~ll~~A~~~~~~~L~~~c~~~l~~~ 305 (400)
+..-+++|.+|+++.++..|.++|..+
T Consensus 175 a~~yYea~ckYgle~vk~kc~ewl~~n 201 (488)
T KOG4682|consen 175 ACGYYEAACKYGLESVKKKCLEWLLNN 201 (488)
T ss_pred hhHhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 899999999999999999999998764
Done!