BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015783
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/328 (56%), Positives = 245/328 (74%), Gaps = 12/328 (3%)
Query: 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY 140
+++E G D G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVKDRIGY
Sbjct: 102 VKRETGPD--GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGY 159
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200
SM+TDAE+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR+LL+A
Sbjct: 160 SMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKA 219
Query: 201 FGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260
FGAE++LTDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW+DT G
Sbjct: 220 FGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKG 279
Query: 261 CVDIFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYV 310
VDIFVA RF+K N + +V+GVEP E ++SG AG++
Sbjct: 280 KVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFI 339
Query: 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLI 370
P LD +++DEVI ++++EA+ A++LAL+E +RPEN+GKLI
Sbjct: 340 PKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLI 399
Query: 371 AAIFPSFGERYIPTVLFRSIYEEVQNMQ 398
A +FPSFGERY+ T LF+SI EEV+ MQ
Sbjct: 400 AVVFPSFGERYLSTPLFQSIREEVEKMQ 427
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/314 (55%), Positives = 228/314 (72%), Gaps = 10/314 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXX 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 274 XXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVI 323
++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 324 KVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIP 383
+V++DE+++MAR+LAL+E +RPEN+GKL AIFPSFGERY+
Sbjct: 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 304
Query: 384 TVLFRSIYEEVQNM 397
TVLF + +E + M
Sbjct: 305 TVLFDATRKEAEAM 318
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/314 (55%), Positives = 228/314 (72%), Gaps = 10/314 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXX 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 274 XXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVI 323
++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 242
Query: 324 KVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIP 383
+V++DE+++MAR+LAL+E +RPEN+GKL AIFPSFGERY+
Sbjct: 243 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 302
Query: 384 TVLFRSIYEEVQNM 397
TVLF + +E + M
Sbjct: 303 TVLFDATRKEAEAM 316
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 172/314 (54%), Positives = 227/314 (72%), Gaps = 10/314 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SV DRIG+SMI+DAE+ G I
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXX 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 274 XXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVI 323
++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 324 KVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIP 383
+V++DE+++MAR+LAL+E +RPEN+GKL AIFPSFGERY+
Sbjct: 245 QVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLS 304
Query: 384 TVLFRSIYEEVQNM 397
TVLF + +E + M
Sbjct: 305 TVLFDATRKEAEAM 318
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 338 bits (868), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/316 (51%), Positives = 220/316 (69%), Gaps = 10/316 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
NI + V+QLIGRTP+VYLNKVTEGC VA K E M+P S+KDR Y+MITDAEE I
Sbjct: 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLI 83
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
TPGKT L+EPT+GN G+ +AF+AA+KGYK+++TMP+ T+LERR+ +RAFGAE+ILTDP K
Sbjct: 84 TPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAK 143
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G+ G + KA E++ NTPNA+M QQF N AN ++HF++TGPEIWEDT G VDIFV
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSG 203
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQLLDEV 322
++LK N +K+ GVEP+E +V I+G G+ P ILD+ ++++V
Sbjct: 204 GTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKV 263
Query: 323 IKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYI 382
++V++++AVNMAR LAL+E + PEN GKLI + PSFGERY+
Sbjct: 264 LEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYL 323
Query: 383 PTVLFRSIYEEVQNMQ 398
+VLF+ + +E +NMQ
Sbjct: 324 SSVLFQELRQEAENMQ 339
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 337 bits (863), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 162/316 (51%), Positives = 219/316 (69%), Gaps = 10/316 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
NI + V+QLIGRTP+VYLNKVTEGC VA K E M+P S+ DR Y+MITDAEE I
Sbjct: 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLI 83
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
TPGKT L+EPT+GN G+ +AF+AA+KGYK+++TMP+ T+LERR+ +RAFGAE+ILTDP K
Sbjct: 84 TPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAK 143
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G+ G + KA E++ NTPNA+M QQF N AN ++HF++TGPEIWEDT G VDIFV
Sbjct: 144 GMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSG 203
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQLLDEV 322
++LK N +K+ GVEP+E +V I+G G+ P ILD+ ++++V
Sbjct: 204 GTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKV 263
Query: 323 IKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYI 382
++V++++AVNMAR LAL+E + PEN GKLI + PSFGERY+
Sbjct: 264 LEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRLAQLPENKGKLIVTVHPSFGERYL 323
Query: 383 PTVLFRSIYEEVQNMQ 398
+VLF+ + +E +NMQ
Sbjct: 324 SSVLFQELRQEAENMQ 339
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 192/311 (61%), Gaps = 11/311 (3%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
++IAED+TQLIGRTP+V L +VT+G V ++ AKLE P SVKDRIG +M+ AE++G
Sbjct: 4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGL 63
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V A +GY+ ++TMP + +LERR+LLRA+GAE+ILT
Sbjct: 64 IKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
G+ GA+ KAEE+ ++ QQF+N AN IH +T E+W DT G VDI VA
Sbjct: 123 DGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD L+DE
Sbjct: 183 GGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDE 242
Query: 322 VIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERY 381
+I V N++A+N+ARRLA EE RRPEN+GKLI + P FGERY
Sbjct: 243 IITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERY 302
Query: 382 IPTVLFRSIYE 392
+ T LF + +
Sbjct: 303 LSTPLFADVAD 313
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 193/311 (62%), Gaps = 11/311 (3%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
+ IAE++TQLIG TP+V L +VT+G +V AKLES P S+KDRIG +MI AE++G
Sbjct: 5 MTIAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGL 64
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V+A +GYK ++TMP + ++ERR+LLRA+GAE++LT
Sbjct: 65 IKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA 123
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
+G+ GA+ KAEE+ ++ QQF+N AN +H +T E+W DT G VDIFV+
Sbjct: 124 EGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGT 183
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD+ L+DE
Sbjct: 184 GGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDE 243
Query: 322 VIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERY 381
VI V ND+A+ +ARR+A EE RPEN+GKLI + P FGERY
Sbjct: 244 VITVGNDDALELARRMATEEGLLVGISSGAAVWAARELAHRPENAGKLIVVVLPDFGERY 303
Query: 382 IPTVLFRSIYE 392
+ TVLF + E
Sbjct: 304 LSTVLFADLSE 314
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 264 bits (674), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 191/311 (61%), Gaps = 11/311 (3%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
++IAED+TQLIGRTP+V L +VT+G V ++ AKLE P SV DRIG +M+ AE++G
Sbjct: 4 MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGL 63
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V A +GY+ ++TMP + +LERR+LLRA+GAE+ILT
Sbjct: 64 IKP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
G+ GA+ KAEE+ ++ QQF+N AN IH +T E+W DT G VDI VA
Sbjct: 123 DGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGT 182
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD L+DE
Sbjct: 183 GGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDE 242
Query: 322 VIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERY 381
+I V N++A+N+ARRLA EE RRPEN+GKLI + P FGERY
Sbjct: 243 IITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERY 302
Query: 382 IPTVLFRSIYE 392
+ T LF + +
Sbjct: 303 LSTPLFADVAD 313
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 263 bits (673), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 192/311 (61%), Gaps = 11/311 (3%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
+ IAE++ QLIG TP+V L +VT+G +V AKLES P S+KDRIG +MI AE++G
Sbjct: 5 MTIAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGL 64
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I P T+++EPT+GNTG+ +A V+A +GYK ++TMP + ++ERR+LLRA+GAE++LT
Sbjct: 65 IKP-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA 123
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXX 271
+G+ GA+ KAEE+ ++ QQF+N AN +H +T E+W DT G VDIFV+
Sbjct: 124 EGMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGT 183
Query: 272 XXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
+ +K + V VEPA V+SG AG+VP +LD+ L+DE
Sbjct: 184 GGTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDE 243
Query: 322 VIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERY 381
VI V ND+A+ +ARR+A EE RPEN+GKLI + P FGERY
Sbjct: 244 VITVGNDDALELARRMATEEGLLFGISSGAAVWAARELAHRPENAGKLIVVVLPDFGERY 303
Query: 382 IPTVLFRSIYE 392
+ TVLF + E
Sbjct: 304 LSTVLFADLSE 314
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 247 bits (630), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 182/315 (57%), Gaps = 11/315 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
N+A+ + QLIG+TP +YLNK+ V K+E P SVKDR+G+++ AE+ G +
Sbjct: 31 NVAQSIDQLIGQTPALYLNKLNN-TKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKL 89
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PGK+V+VE ++GNTG+ +A + A++GYK+I+TMP S +LERR LLR FGAE+ILT
Sbjct: 90 IPGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 149
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G++GA+ A++IV PNA + QF N IH ++TGPEIWE T VD F+A
Sbjct: 150 GMKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 209
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEV 322
R LK M ++V VEP E V+SG G+VP +LD L+DEV
Sbjct: 210 GTLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEV 269
Query: 323 IKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYI 382
V D+A+ A +L + RPE GK I I PSFGERY+
Sbjct: 270 FCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTIIPSFGERYL 329
Query: 383 PTVLFRSIYEEVQNM 397
T L+RS+ +EV ++
Sbjct: 330 STALYRSVRDEVSSL 344
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 182/315 (57%), Gaps = 11/315 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
N+A+ + QLIG+TP +YLNK+ V K+E P SV DR+G+++ AE+ G +
Sbjct: 10 NVAQSIDQLIGQTPALYLNKLNN-TKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKL 68
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PGK+++VE ++GNTG+ +A + A++GYK+I+TMP S +LERR LLR FGAE+ILT
Sbjct: 69 IPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 128
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G++GA+ A++IV PNA + QF N IH ++TGPEIWE T VD F+A
Sbjct: 129 GMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 188
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEV 322
R LK M ++V VEP E V+SG G+VP +LD L+DEV
Sbjct: 189 GTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEV 248
Query: 323 IKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYI 382
+ V D+A+ A +L + RPE GK I + PSFGERY+
Sbjct: 249 LCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKIAERPEMEGKTIVTVIPSFGERYL 308
Query: 383 PTVLFRSIYEEVQNM 397
T L+RS+ +EV ++
Sbjct: 309 STTLYRSVRDEVSSL 323
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 189/325 (58%), Gaps = 24/325 (7%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I ED + IG TP+V LN++ G + AK+ES P SVK RIG +MI DAE+ G +
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG LVEPT GNTG+ +A+VAA +GYKL +TMP + ++ERR LL+A GA ++LT+ KG
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 214 LRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
++GA+ KAEEIV + P Y + QQF N AN +IH +TGPEIWEDT G VD+F++
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 273 XXXXXXXRFLKMM--NKEIKVVGVEPAERSVIS----------------GENAGYVPSIL 314
R++K ++ V VEP + VI+ G AG++P L
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNL 238
Query: 315 DVQLLDEVIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIF 374
D++L+D+V+ +TN+EA++ ARRL EE + K I I
Sbjct: 239 DLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVIL 298
Query: 375 PSFGERYIPTVLFRSIYEEVQNMQQ 399
PS GERY+ T LF ++ E + +QQ
Sbjct: 299 PSSGERYLSTALFADLFTE-KELQQ 322
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/325 (41%), Positives = 188/325 (57%), Gaps = 24/325 (7%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I ED + IG TP+V LN++ G + AK+ES P SV RIG +MI DAE+ G +
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG LVEPT GNTG+ +A+VAA +GYKL +TMP + ++ERR LL+A GA ++LT+ KG
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 214 LRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
++GA+ KAEEIV + P Y + QQF N AN +IH +TGPEIWEDT G VD+F++
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 273 XXXXXXXRFLKMM--NKEIKVVGVEPAERSVIS----------------GENAGYVPSIL 314
R++K ++ V VEP + VI+ G AG++P L
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNL 238
Query: 315 DVQLLDEVIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIF 374
D++L+D+V+ +TN+EA++ ARRL EE + K I I
Sbjct: 239 DLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVIL 298
Query: 375 PSFGERYIPTVLFRSIYEEVQNMQQ 399
PS GERY+ T LF ++ E + +QQ
Sbjct: 299 PSSGERYLSTALFADLFTE-KELQQ 322
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 174/305 (57%), Gaps = 21/305 (6%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK- 156
V IG+TP+V L KV E + V KLE + P S+KDR + MI DAEE G + PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
V+VEPT+GNTG+G+A +AA +GY+LI+TMPA + ER+ +L+AFGAE++LTDPE+ +
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 217 ALDKA----EEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
A ++A EE+ A+M QF N AN++ H+++TGPE++E G +D FV
Sbjct: 123 AREEALRLKEEL-----GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTG 177
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEV 322
R+LK +KV+ VEPA +V+SG G++P LD+ LLD V
Sbjct: 178 GTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGV 237
Query: 323 IKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYI 382
I+V ++A +ARRLA EE R GK +A I P G +Y+
Sbjct: 238 IQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARE-LGPGKRVACISPDGGWKYL 296
Query: 383 PTVLF 387
T L+
Sbjct: 297 STPLY 301
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 175/315 (55%), Gaps = 21/315 (6%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I D + IG TP+V L G GNV K+E P SV RIG +M+ AE+ G +T
Sbjct: 3 IYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTLT 60
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
GK + V+ T+GNTG+ +A+VAA +GYK+ +TMP + +LER+ LL G ++LT+ KG
Sbjct: 61 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 119
Query: 214 LRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
++GA+ KAEEIV + P+ Y M +QF+N AN +IH ++TGPEIW+DT G VD+ VA
Sbjct: 120 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 179
Query: 273 XXXXXXXRFLKM-MNKEIKVVGVEPAERSVIS----------------GENAGYVPSILD 315
R +K+ K+I V VEP E VIS G AG++P LD
Sbjct: 180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 239
Query: 316 VQLLDEVIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFP 375
+ ++D V V +D A+ ARRL EE + PE + KLI I P
Sbjct: 240 LSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILP 299
Query: 376 SFGERYIPTVLFRSI 390
S ERY+ T LF I
Sbjct: 300 SASERYLSTALFEGI 314
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 130/301 (43%), Positives = 172/301 (57%), Gaps = 13/301 (4%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
+T+LIG TP V LN++ + +V KLE M P SVKDRI +MI AE++G + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
+ VEPT+GNTG+G+A VAA KGYK ++ MP + +LERR LLRA+GAE++LT +G+RGA
Sbjct: 68 I-VEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 218 LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXX 277
+ KAEE+V +M QQF N AN +IH +TG EI E +D FVA
Sbjct: 127 IAKAEELVREH-GYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTITG 185
Query: 278 XXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVIKVTN 327
+ L+ IK+ VEPA+ V+SG AG+VP ILD + D VI VT
Sbjct: 186 AGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVTT 245
Query: 328 DEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIPTVLF 387
+EA ARR A EE + GK + AI PS GERY+ T L+
Sbjct: 246 EEAFAAARRAAREEGILGGISSGAAIHAALKVAKE-LGKGKKVLAIIPSNGERYLSTPLY 304
Query: 388 R 388
+
Sbjct: 305 Q 305
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 155/291 (53%), Gaps = 7/291 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ + KLE P SVKDR SMI +AE+ G+I PG VL
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A + + QF+N N H+ +TGPEIW T G + FV++
Sbjct: 125 LALAMS-ERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
RFL+ K + +VG++P E S I G A Y+P I + L+DEV+ + ++A N R
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMPGIFNASLVDEVLDIHQNDAENTMRE 243
Query: 337 LALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIPTVLF 387
LA+ E R G ++ AI G+RY+ T +F
Sbjct: 244 LAVREGIFCGVSSGGAVAGALRVAR--ATPGAIVVAIICDRGDRYLSTGVF 292
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 157/291 (53%), Gaps = 7/291 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ V KLE P SVKDR SMI +AE+ G+I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A E+ N + QF+N N H+ +TGPEIW+ T G + FV++
Sbjct: 125 LALEMA-NRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
RF++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N R
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRE 243
Query: 337 LALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIPTVLF 387
LA+ E + N ++ AI G+RY+ T +F
Sbjct: 244 LAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 155/291 (53%), Gaps = 7/291 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ V KLE P SV DR SMI +AE+ G I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A E+ N + QF+N N K H+ +TGPEIW+ T G + FV++
Sbjct: 125 LALEMA-NRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
F++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N R
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRE 243
Query: 337 LALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIPTVLF 387
LA+ E + N ++ AI G+RY+ T +F
Sbjct: 244 LAVREGIFCGVSSGGAVAGALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 155/291 (53%), Gaps = 7/291 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
Q IG TP+V L ++ V KLE P SV DR SMI +AE+ G+I PG VL
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGD-VL 64
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARD 124
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
A E+ N + QF+N N H+ +TGPEIW+ T G + FV++
Sbjct: 125 LALEMA-NRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 280 RFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
RF++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N R
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTMRE 243
Query: 337 LALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPSFGERYIPTVLF 387
LA+ E N ++ AI G+RY+ T +F
Sbjct: 244 LAVREGIFCGVSSGGAVAGALRVA--AANPDAVVVAIICDRGDRYLSTGVF 292
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 171 bits (432), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 167/312 (53%), Gaps = 21/312 (6%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTE------GCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
I ++ + IG TP+V L+ VTE G + KLE P SVKDR+G++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 69
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ G + PG + +E T+GNTG+ + AV GY++ + MP++ ++ER+++++AFGAE+IL
Sbjct: 70 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 128
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMF-QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFV 266
T+ +KG+ GA+++ +++ P Y QF N N H T EIWEDT G VDI V
Sbjct: 129 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVV 187
Query: 267 AAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDV 316
+A LK K IK++ VEP E +V+ G+ AG++P I
Sbjct: 188 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK 247
Query: 317 QLLDEVIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPS 376
+ +DE+I + +A MAR + + +PEN GK I I PS
Sbjct: 248 EFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPS 307
Query: 377 FGERYIPTVLFR 388
GERY+ T L++
Sbjct: 308 CGERYLSTDLYK 319
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 167/312 (53%), Gaps = 21/312 (6%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTE------GCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
I ++ + IG TP+V L+ VTE G + KLE P SVKDR+G++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGT--RILVKLEYFNPMSSVKDRVGFNIVYQAI 70
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ G + PG + +E T+GNTG+ + AV GY++ + MP++ ++ER+++++AFGAE+IL
Sbjct: 71 KDGRLKPGMEI-IESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELIL 129
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMF-QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFV 266
T+ +KG+ GA+++ +++ P Y QF N N H T EIWEDT G VDI V
Sbjct: 130 TEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVV 188
Query: 267 AAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDV 316
+A LK K IK++ VEP E +V+ G+ AG++P I
Sbjct: 189 SAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKK 248
Query: 317 QLLDEVIKVTNDEAVNMARRLALEEXXXXXXXXXXXXXXXXXXXRRPENSGKLIAAIFPS 376
+ +DE+I + +A MAR + + +PEN GK I I PS
Sbjct: 249 EFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKEAEKPENEGKTIVIIVPS 308
Query: 377 FGERYIPTVLFR 388
GERY+ T L++
Sbjct: 309 CGERYLSTDLYK 320
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 147/253 (58%), Gaps = 19/253 (7%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
+LIG TP+V L+ + + KLE P SVKDR MI DAE+ G + G +
Sbjct: 4 RLIGSTPIVRLDSIDS----RIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 56
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E G++GA++
Sbjct: 57 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 116
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
KA EI T A+M QF+N N+ H +TGPEI + +D FVA
Sbjct: 117 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 175
Query: 280 RFLK-MMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVIKVTND 328
R LK +K+V VEPA+ V+SG AG+VP ILD ++DEVI V ++
Sbjct: 176 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 235
Query: 329 EAVNMARRLALEE 341
EA MAR LA +E
Sbjct: 236 EAYEMARYLAKKE 248
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 147/253 (58%), Gaps = 19/253 (7%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
+LIG TP+V L+ + + KLE P SVKDR MI DAE+ G + G +
Sbjct: 16 RLIGSTPIVRLDSIDS----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---I 68
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E G++GA++
Sbjct: 69 VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVE 128
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXX 279
KA EI T A+M QF+N N+ H +TGPEI + +D FVA
Sbjct: 129 KALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 187
Query: 280 RFLK-MMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEVIKVTND 328
R LK +K+V VEPA+ V+SG AG+VP ILD ++DEVI V ++
Sbjct: 188 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDE 247
Query: 329 EAVNMARRLALEE 341
EA MAR LA +E
Sbjct: 248 EAYEMARYLAKKE 260
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 141/273 (51%), Gaps = 29/273 (10%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 32 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 91
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT-- 208
+ PG T+ +EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 92 TLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 150
Query: 209 -----DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVD 263
PE + A EI PN+++ Q+ N +N H+D+T EI + G +D
Sbjct: 151 NARFDSPESHVGVAWRLKNEI----PNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 206
Query: 264 IFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEP-------------AERSVISGENAGY- 309
+ VA+ R LK +++GV+P E++ E GY
Sbjct: 207 MLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYD 266
Query: 310 -VPSILDVQLLDEVIKVTNDEAVNMARRLALEE 341
+P++LD ++D+ K ++EA AR L +E
Sbjct: 267 FIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQE 299
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/273 (34%), Positives = 141/273 (51%), Gaps = 29/273 (10%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT-- 208
+ PG T+ +EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 157 TLKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 209 -----DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVD 263
PE + A EI PN+++ Q+ N +N H+D+T EI + G +D
Sbjct: 216 NARFDSPESHVGVAWRLKNEI----PNSHILDQYRNASNPLAHYDTTADEILQQCDGKLD 271
Query: 264 IFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEP-------------AERSVISGENAGY- 309
+ VA+ R LK +++GV+P E++ E GY
Sbjct: 272 MLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYD 331
Query: 310 -VPSILDVQLLDEVIKVTNDEAVNMARRLALEE 341
+P++LD ++D+ K ++EA AR L +E
Sbjct: 332 FIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQE 364
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 137/272 (50%), Gaps = 21/272 (7%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKV--TEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
H I ++ ++IG TP+V LN + ++G + AK E + P SVKDRIGY M+ DAE
Sbjct: 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAE 105
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E G + PG T+ +EPT+GNTG+G+A AVKGYK I+ MP + E+ LR GA+II
Sbjct: 106 EQGLLKPGYTI-IEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIR 164
Query: 208 TDPEKGL---RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264
T E G + A+++ TPN+ + Q+ N N H+D T EI VD+
Sbjct: 165 TPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDM 224
Query: 265 FVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEP---------------AERSVISGENAGY 309
V + R +K ++VGV+P + + G +
Sbjct: 225 IVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDF 284
Query: 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEE 341
P++ D ++D K+ + + M+RRL EE
Sbjct: 285 PPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEE 316
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 131/256 (51%), Gaps = 12/256 (4%)
Query: 96 EDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
+ + Q +G TP+V L +++ +G + AKLE P S+KDR MI AE
Sbjct: 7 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEA 66
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG T+L EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+II +
Sbjct: 67 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 125
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D L + FVA
Sbjct: 126 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAG 184
Query: 269 XXXXXXXXXXXRFLKMMNKEIKVVGVEPAERS---VISGENAGYVPSILDVQLLDEVIKV 325
RFL+ +K+V EP + + G+VP + D ++L V
Sbjct: 185 LGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTARYSV 244
Query: 326 TNDEAVNMARRLALEE 341
+AV R L E
Sbjct: 245 GAVDAVRRTRELVHTE 260
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 130/256 (50%), Gaps = 12/256 (4%)
Query: 96 EDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
+ + Q +G TP+V L +++ +G + AKLE P S+ DR MI AE
Sbjct: 8 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEA 67
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG T+L EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+II +
Sbjct: 68 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 126
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D L + FVA
Sbjct: 127 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAG 185
Query: 269 XXXXXXXXXXXRFLKMMNKEIKVVGVEPAERS---VISGENAGYVPSILDVQLLDEVIKV 325
RFL+ +K+V EP + + G+VP + D ++L V
Sbjct: 186 LGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTARYSV 245
Query: 326 TNDEAVNMARRLALEE 341
+AV R L E
Sbjct: 246 GAVDAVRRTRELVHTE 261
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 130/256 (50%), Gaps = 12/256 (4%)
Query: 96 EDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
+ + Q +G TP+V L +++ +G + AKLE P S+KDR MI AE
Sbjct: 5 DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEA 64
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG T+L EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+II +
Sbjct: 65 DGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFS 123
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D L + FVA
Sbjct: 124 AAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLAD-LPEITHFVAG 182
Query: 269 XXXXXXXXXXXRFLKMMNKEIKVVGVEPAERS---VISGENAGYVPSILDVQLLDEVIKV 325
RFL+ + +V EP + + G+VP + D ++L V
Sbjct: 183 LGTTGTLMGTGRFLREHVANVAIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTARYSV 242
Query: 326 TNDEAVNMARRLALEE 341
+AV R L E
Sbjct: 243 GAVDAVRRTRELVHTE 258
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT 164
TP+ + K++ + K E +P S K R Y+M+ E ++ +
Sbjct: 32 TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHG----VITASA 87
Query: 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
GN G+AF +A G K ++ MP +T + +R FG E++L
Sbjct: 88 GNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 12/190 (6%)
Query: 121 VAAKLESMEPCR-SVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179
V KLE P SVKDR +I+ S + G +++ + T+ N G+ ++ VA + G
Sbjct: 112 VWLKLEWYNPFSLSVKDRPAVEIIS--RLSRRVEKG-SLVADATSSNFGVALSAVARLYG 168
Query: 180 YKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ--QF 237
Y+ V +P + ++L R GA++I+ DPE + ++ ++ N QF
Sbjct: 169 YRARVYLPGAAEEFGKLLPRLLGAQVIV-DPEA--PSTVHLLPRVMKDSKNEGFVHVNQF 225
Query: 238 DNMANLKIHFDSTGPEIWEDTL--GCVDIFVAAXXXXXXXXXXXRF-LKMMNKEIKVVGV 294
N AN + H T EI+ + G VA F L+ ++ I+ V V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 295 EPAERSVISG 304
+PA+ I G
Sbjct: 286 QPAQGDSIPG 295
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 121 VAAKLESMEPCR-SVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179
V KLE P SV DR +I+ S + G +++ + T+ N G+ ++ VA + G
Sbjct: 112 VWLKLEWYNPFSLSVADRPAVEIIS--RLSRRVEKG-SLVADATSSNFGVALSAVARLYG 168
Query: 180 YKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ--QF 237
Y+ V +P + ++L R GA++I+ DPE + ++ ++ N QF
Sbjct: 169 YRARVYLPGAAEEFGKLLPRLLGAQVIV-DPEA--PSTVHLLPRVMKDSKNEGFVHVNQF 225
Query: 238 DNMANLKIHFDSTGPEIWEDTL--GCVDIFVAAXXXXXXXXXXXRF-LKMMNKEIKVVGV 294
N AN + H T EI+ + G VA F L+ ++ I+ V V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 295 EPAERSVISG 304
+PA+ I G
Sbjct: 286 QPAQGDSIPG 295
>pdb|3R0Z|A Chain A, Crystal Structure Of Apo D-Serine Deaminase From
Salmonella Typhimurium
Length = 448
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 133 SVKDRIG-YSMITDAE----ESGDITPGK--TVLVEP--------------TTGNTGLGI 171
S+K R G Y ++T AE E+G +T +VL+ P +TGN GL I
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231
++A G+K+ V M A ++ LR+ G ++ + + G+ A+++ + + PN
Sbjct: 174 GIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 232 YM 233
+
Sbjct: 232 FF 233
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206
L+ ++GN G+A+ A V G K +V MP + ++ RA+GAE++
Sbjct: 68 LLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115
>pdb|3R0X|A Chain A, Crystal Structure Of Selenomethionine Incorporated Apo
D-Serine Deaminase From Salmonella Tyhimurium
Length = 448
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 23/122 (18%)
Query: 133 SVKDRIG-YSMITDAE----ESGDITPGK--TVLVEP--------------TTGNTGLGI 171
S+K R G Y ++T AE E+G +T +VL+ P +TGN GL I
Sbjct: 114 SIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSI 173
Query: 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231
+A G+K+ V A ++ LR+ G ++ + + G+ A+++ + + PN
Sbjct: 174 GIXSACIGFKVTVHXSADARAWKKAKLRSHGVTVVEYEDDYGV--AVEQGRKAAQSDPNC 231
Query: 232 YM 233
+
Sbjct: 232 FF 233
>pdb|3SS7|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.55 A Resolution
pdb|3SS9|X Chain X, Crystal Structure Of Holo D-Serine Dehydratase From
Escherichia Coli At 1.97 A Resolution
Length = 442
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222
+TGN GL I ++A G+K+ V M A ++ LR+ G ++ + + G+ A+++
Sbjct: 167 STGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV--AVEEGR 224
Query: 223 EIVLNTPNAYM 233
+ + PN +
Sbjct: 225 KAAQSDPNCFF 235
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ MP + ER + GAE I+TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ MP + ER + GAE I+TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ MP + ER + GAE I+TD
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
K T GN G G+A+ A G ++ P + ER + GAE I+TD
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+V ++GN G + + A ++G + +P + +++ ++A+GA I+ +P R
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESR 135
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+V ++GN G + + A ++G + +P + +++ ++A+GA I+ ++P R
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGASIVYSEPSDESR 135
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 78/197 (39%), Gaps = 15/197 (7%)
Query: 102 IGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY---SMITDAEESGDITPGKTV 158
I +T M N +E C G + K E+M+ S R + S +T+AE+ +
Sbjct: 38 IYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLTEAEK-------RKG 90
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGAL 218
+V + GN G++ A+ G V MP + + AE++L +
Sbjct: 91 VVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDN--FNDTI 148
Query: 219 DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXX 278
K EIV T +D+ + + G EI ED L VD +
Sbjct: 149 AKVSEIV-ETEGRIFIPPYDDPKVIAGQ-GTIGLEIMED-LYDVDNVIVPIGGGGLIAGI 205
Query: 279 XRFLKMMNKEIKVVGVE 295
+K +N IKV+GV+
Sbjct: 206 AIAIKSINPTIKVIGVQ 222
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
VT L G TP++ +++ + K+E + P S KDR +TDA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMP----ASTNLERRILLRAFGAEIILTD 209
++ +TGNT A AA G V +P A L + ++ GA+II D
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVM---HGAKIIQID 139
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 30/52 (57%)
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+V ++GN G + + A ++G + +P + +++ ++A+GA I+ +P
Sbjct: 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP 130
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
+E + + +TP++ + V + V V K E+ + + K R + ++ E+
Sbjct: 17 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR--- 73
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
K ++ ++GN IA A + G + MP + + +G ++I+ D K
Sbjct: 74 -KAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDD 132
Query: 215 RGALDK 220
R + K
Sbjct: 133 REKMAK 138
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E G ++PG+ VL+ TG G+ +A + G ++ T A ++ +R +L R G E +
Sbjct: 32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTT--AGSDAKREMLSR-LGVEYV- 87
Query: 208 TDPEKGLRGALDKAEEIV 225
G ++D A+EI+
Sbjct: 88 -----GDSRSVDFADEIL 100
>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|B Chain B, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|C Chain C, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
pdb|2ZSJ|D Chain D, Crystal Structure Of Threonine Synthase From Aquifex
Aeolicus Vf5
Length = 352
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 98 VTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155
VT G TP++ + + G G + K E + P S KDR I+ A E+G
Sbjct: 24 VTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAG----- 78
Query: 156 KTVLVEPTTGNT 167
K ++ +TGNT
Sbjct: 79 KRAVICASTGNT 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,351,377
Number of Sequences: 62578
Number of extensions: 323366
Number of successful extensions: 856
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 57
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)