Query 015783
Match_columns 400
No_of_seqs 247 out of 1641
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02565 cysteine synthase 100.0 2.4E-63 5.3E-68 487.0 36.4 303 95-397 6-318 (322)
2 PLN02556 cysteine synthase/L-3 100.0 3.8E-63 8.2E-68 492.7 37.7 306 94-399 49-364 (368)
3 COG0031 CysK Cysteine synthase 100.0 2.3E-62 5E-67 465.7 32.2 285 97-383 4-299 (300)
4 PLN03013 cysteine synthase 100.0 4.2E-61 9.2E-66 481.0 37.8 293 93-385 112-415 (429)
5 PLN00011 cysteine synthase 100.0 2.9E-60 6.3E-65 466.3 36.2 303 95-397 8-320 (323)
6 TIGR01136 cysKM cysteine synth 100.0 8.7E-60 1.9E-64 458.6 34.1 286 100-386 3-298 (299)
7 PRK11761 cysM cysteine synthas 100.0 7.7E-60 1.7E-64 457.8 33.4 289 96-388 4-295 (296)
8 TIGR01138 cysM cysteine syntha 100.0 7.9E-59 1.7E-63 449.6 33.4 285 98-386 2-289 (290)
9 PRK10717 cysteine synthase A; 100.0 1.2E-58 2.6E-63 456.5 34.8 299 95-395 4-325 (330)
10 TIGR01139 cysK cysteine syntha 100.0 1.3E-58 2.8E-63 450.3 33.7 285 99-386 2-297 (298)
11 KOG1252 Cystathionine beta-syn 100.0 6.7E-60 1.5E-64 446.3 22.1 307 91-397 39-360 (362)
12 PRK12391 tryptophan synthase s 100.0 8E-58 1.7E-62 461.2 33.6 341 44-391 8-425 (427)
13 PLN02356 phosphateglycerate ki 100.0 2.7E-57 5.8E-62 453.5 34.8 298 96-395 45-410 (423)
14 PRK06352 threonine synthase; V 100.0 5.3E-58 1.2E-62 454.7 29.5 296 80-386 5-325 (351)
15 PRK07591 threonine synthase; V 100.0 5.2E-58 1.1E-62 464.5 29.9 299 77-385 64-397 (421)
16 PRK08197 threonine synthase; V 100.0 1.1E-57 2.3E-62 459.5 29.3 298 78-385 54-387 (394)
17 TIGR01415 trpB_rel pyridoxal-p 100.0 5.8E-57 1.3E-61 454.3 33.9 338 48-391 2-416 (419)
18 cd01561 CBS_like CBS_like: Thi 100.0 1.7E-56 3.8E-61 433.9 34.5 279 103-383 1-291 (291)
19 PRK06721 threonine synthase; R 100.0 9.7E-57 2.1E-61 446.0 31.6 300 81-390 5-329 (352)
20 TIGR01137 cysta_beta cystathio 100.0 1.3E-56 2.8E-61 460.1 33.6 299 97-396 4-320 (454)
21 PRK12483 threonine dehydratase 100.0 6.8E-56 1.5E-60 455.8 33.0 294 97-398 30-347 (521)
22 COG1171 IlvA Threonine dehydra 100.0 2.9E-56 6.2E-61 431.1 27.7 277 94-378 15-314 (347)
23 PRK07409 threonine synthase; V 100.0 1.3E-55 2.9E-60 438.5 31.7 296 81-386 8-329 (353)
24 PRK06260 threonine synthase; V 100.0 6.6E-56 1.4E-60 446.9 29.3 296 78-386 44-375 (397)
25 PRK08526 threonine dehydratase 100.0 1.8E-55 3.9E-60 442.9 30.7 295 93-398 9-328 (403)
26 PLN02569 threonine synthase 100.0 2.1E-55 4.6E-60 449.5 31.2 303 77-386 106-446 (484)
27 PRK06382 threonine dehydratase 100.0 2.6E-55 5.7E-60 443.5 31.3 296 93-399 14-333 (406)
28 PRK08329 threonine synthase; V 100.0 3.3E-55 7.2E-60 434.3 30.5 284 79-382 41-347 (347)
29 PLN02970 serine racemase 100.0 4.1E-55 9E-60 430.6 31.0 279 94-382 17-319 (328)
30 PRK08198 threonine dehydratase 100.0 2.3E-55 5E-60 444.4 29.9 294 93-397 11-328 (404)
31 TIGR02079 THD1 threonine dehyd 100.0 2.6E-55 5.7E-60 443.3 30.2 296 93-399 5-328 (409)
32 PRK08638 threonine dehydratase 100.0 6.5E-55 1.4E-59 429.3 29.8 282 93-384 16-319 (333)
33 PRK06608 threonine dehydratase 100.0 6.3E-55 1.4E-59 430.3 29.2 290 93-393 12-326 (338)
34 PRK13028 tryptophan synthase s 100.0 2.5E-54 5.4E-59 431.9 33.3 318 63-386 16-394 (402)
35 PRK07476 eutB threonine dehydr 100.0 1.7E-54 3.7E-59 425.5 30.8 287 93-393 8-318 (322)
36 TIGR01124 ilvA_2Cterm threonin 100.0 1.4E-54 3.1E-59 446.1 31.6 294 97-398 10-327 (499)
37 PRK04346 tryptophan synthase s 100.0 3E-54 6.4E-59 430.7 32.3 318 63-386 12-390 (397)
38 PLN02550 threonine dehydratase 100.0 2.8E-54 6.1E-59 446.3 32.3 275 97-379 102-398 (591)
39 PRK08639 threonine dehydratase 100.0 1.5E-54 3.3E-59 439.6 29.6 295 94-399 15-339 (420)
40 cd01563 Thr-synth_1 Threonine 100.0 9.1E-55 2E-59 428.0 27.0 288 82-381 2-324 (324)
41 TIGR02991 ectoine_eutB ectoine 100.0 5.9E-54 1.3E-58 420.4 32.2 283 93-390 8-314 (317)
42 PRK07334 threonine dehydratase 100.0 1.6E-54 3.5E-59 437.6 29.1 291 93-394 12-324 (403)
43 PRK06110 hypothetical protein; 100.0 3E-54 6.4E-59 423.8 29.5 285 93-391 10-316 (322)
44 PRK09224 threonine dehydratase 100.0 3.8E-54 8.3E-59 444.5 31.7 295 96-398 12-330 (504)
45 cd06448 L-Ser-dehyd Serine deh 100.0 6.3E-54 1.4E-58 420.0 30.9 282 104-391 1-313 (316)
46 TIGR01127 ilvA_1Cterm threonin 100.0 2.6E-54 5.7E-59 433.5 28.4 282 105-398 1-307 (380)
47 PRK07048 serine/threonine dehy 100.0 4.9E-54 1.1E-58 422.2 29.6 278 94-383 14-313 (321)
48 PRK05638 threonine synthase; V 100.0 4E-54 8.7E-59 439.3 30.1 290 78-383 43-360 (442)
49 PRK02991 D-serine dehydratase; 100.0 9E-54 2E-58 432.9 32.3 309 82-395 53-438 (441)
50 COG1350 Predicted alternative 100.0 1.9E-54 4.1E-59 405.5 25.1 343 45-392 9-427 (432)
51 PLN02618 tryptophan synthase, 100.0 1.5E-53 3.4E-58 426.3 32.9 316 63-386 20-403 (410)
52 PRK06815 hypothetical protein; 100.0 7.5E-54 1.6E-58 420.0 29.8 277 93-380 9-308 (317)
53 cd01562 Thr-dehyd Threonine de 100.0 5.3E-54 1.2E-58 418.7 27.5 276 92-378 5-302 (304)
54 PRK08813 threonine dehydratase 100.0 3.9E-53 8.5E-58 416.5 32.9 273 93-393 28-321 (349)
55 PRK06450 threonine synthase; V 100.0 3.2E-53 7E-58 417.6 30.2 266 86-382 42-338 (338)
56 PRK08246 threonine dehydratase 100.0 6.9E-53 1.5E-57 411.8 30.1 271 93-379 12-304 (310)
57 PRK06381 threonine synthase; V 100.0 9.6E-53 2.1E-57 412.8 29.5 269 99-377 10-317 (319)
58 PRK13802 bifunctional indole-3 100.0 9.1E-52 2E-56 434.4 33.7 319 63-386 280-670 (695)
59 TIGR00260 thrC threonine synth 100.0 1.4E-52 3.1E-57 413.0 25.7 293 81-383 1-328 (328)
60 cd06447 D-Ser-dehyd D-Serine d 100.0 1.1E-51 2.4E-56 413.1 31.9 259 102-363 50-375 (404)
61 TIGR00263 trpB tryptophan synt 100.0 1.6E-51 3.5E-56 412.6 32.3 316 64-385 5-381 (385)
62 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.8E-51 3.8E-56 414.8 31.3 278 99-379 65-421 (431)
63 PRK08206 diaminopropionate amm 100.0 1.6E-51 3.5E-56 414.3 30.4 287 94-384 32-388 (399)
64 KOG1250 Threonine/serine dehyd 100.0 1.1E-51 2.3E-56 396.3 23.1 281 94-383 56-358 (457)
65 cd06446 Trp-synth_B Tryptophan 100.0 1.8E-50 3.9E-55 403.0 31.7 290 90-385 18-365 (365)
66 TIGR03844 cysteate_syn cysteat 100.0 8.3E-51 1.8E-55 407.8 29.2 292 79-384 42-385 (398)
67 PRK13803 bifunctional phosphor 100.0 3.2E-50 7E-55 423.2 30.8 320 60-385 222-601 (610)
68 cd00640 Trp-synth-beta_II Tryp 100.0 1.7E-49 3.7E-54 375.4 32.4 243 105-377 1-244 (244)
69 TIGR01747 diampropi_NH3ly diam 100.0 1.5E-48 3.2E-53 389.2 30.9 272 103-378 21-364 (376)
70 COG0133 TrpB Tryptophan syntha 100.0 1.3E-48 2.8E-53 365.7 24.8 316 64-387 11-388 (396)
71 KOG1481 Cysteine synthase [Ami 100.0 1.7E-48 3.6E-53 358.7 23.1 299 97-397 42-378 (391)
72 TIGR03528 2_3_DAP_am_ly diamin 100.0 1.5E-47 3.2E-52 384.5 30.9 274 102-378 39-383 (396)
73 KOG1251 Serine racemase [Signa 100.0 4.1E-48 8.8E-53 350.5 21.5 285 92-390 13-319 (323)
74 PF00291 PALP: Pyridoxal-phosp 100.0 4.8E-47 1E-51 369.3 27.4 267 98-376 1-306 (306)
75 KOG1395 Tryptophan synthase be 100.0 6.9E-47 1.5E-51 357.2 23.5 335 49-391 58-458 (477)
76 PRK03910 D-cysteine desulfhydr 100.0 3E-46 6.4E-51 368.5 25.4 277 97-379 8-320 (331)
77 TIGR01275 ACC_deam_rel pyridox 100.0 4.2E-46 9E-51 364.5 26.1 275 101-382 4-305 (311)
78 cd06449 ACCD Aminocyclopropane 100.0 5.5E-46 1.2E-50 363.0 25.7 267 105-377 1-307 (307)
79 PRK12390 1-aminocyclopropane-1 100.0 1.5E-45 3.2E-50 364.4 26.6 279 97-380 8-327 (337)
80 TIGR01274 ACC_deam 1-aminocycl 100.0 3.4E-45 7.4E-50 361.7 26.9 278 97-380 7-326 (337)
81 COG0498 ThrC Threonine synthas 100.0 1E-44 2.3E-49 360.7 26.5 300 75-385 49-379 (411)
82 PRK14045 1-aminocyclopropane-1 100.0 1.3E-42 2.9E-47 342.0 24.0 278 97-383 14-320 (329)
83 PRK09225 threonine synthase; V 100.0 3.9E-32 8.5E-37 276.2 27.5 261 104-386 88-419 (462)
84 cd01560 Thr-synth_2 Threonine 100.0 2.8E-31 6.1E-36 270.1 28.2 262 105-386 88-423 (460)
85 COG2515 Acd 1-aminocyclopropan 100.0 4.5E-29 9.8E-34 234.2 21.0 278 97-380 8-315 (323)
86 COG3048 DsdA D-serine dehydrat 99.9 2.4E-24 5.2E-29 201.2 19.2 280 97-379 71-429 (443)
87 KOG2616 Pyridoxalphosphate-dep 94.9 0.054 1.2E-06 49.7 5.5 65 322-387 148-212 (266)
88 PF00107 ADH_zinc_N: Zinc-bind 86.8 4.7 0.0001 33.3 8.5 88 168-297 3-91 (130)
89 PF03808 Glyco_tran_WecB: Glyc 84.2 6.2 0.00014 35.1 8.4 98 168-273 13-113 (172)
90 COG0800 Eda 2-keto-3-deoxy-6-p 82.6 26 0.00055 32.4 11.7 124 139-275 27-165 (211)
91 COG1063 Tdh Threonine dehydrog 82.6 31 0.00068 34.3 13.6 51 158-210 171-222 (350)
92 PF01210 NAD_Gly3P_dh_N: NAD-d 80.9 3.2 6.9E-05 36.3 5.2 42 159-203 2-43 (157)
93 PRK13656 trans-2-enoyl-CoA red 79.4 26 0.00056 35.6 11.5 57 127-186 14-73 (398)
94 cd08294 leukotriene_B4_DH_like 79.3 22 0.00047 34.2 11.0 57 148-207 137-193 (329)
95 PRK03659 glutathione-regulated 79.2 68 0.0015 34.5 15.6 97 157-295 401-498 (601)
96 cd08230 glucose_DH Glucose deh 78.6 14 0.00029 36.5 9.5 52 154-206 172-223 (355)
97 TIGR02819 fdhA_non_GSH formald 78.0 24 0.00051 35.7 11.1 56 147-205 178-233 (393)
98 PRK03562 glutathione-regulated 77.8 71 0.0015 34.5 15.2 50 157-209 401-450 (621)
99 cd06533 Glyco_transf_WecG_TagA 76.5 18 0.00039 32.1 8.7 116 168-295 11-132 (171)
100 PF07279 DUF1442: Protein of u 76.2 32 0.0007 31.9 10.2 59 142-203 31-94 (218)
101 TIGR03201 dearomat_had 6-hydro 75.3 30 0.00064 34.0 10.8 57 147-207 159-215 (349)
102 TIGR03366 HpnZ_proposed putati 75.2 20 0.00043 34.0 9.3 52 153-207 119-170 (280)
103 PRK05993 short chain dehydroge 74.5 45 0.00098 31.4 11.5 51 156-209 5-55 (277)
104 cd01075 NAD_bind_Leu_Phe_Val_D 74.2 31 0.00068 31.4 9.9 67 137-206 7-76 (200)
105 PRK06935 2-deoxy-D-gluconate 3 73.7 24 0.00052 32.8 9.3 68 156-223 16-83 (258)
106 PRK12481 2-deoxy-D-gluconate 3 73.5 23 0.00051 32.9 9.1 68 156-224 9-76 (251)
107 PRK12823 benD 1,6-dihydroxycyc 72.9 21 0.00046 33.1 8.7 56 156-211 9-64 (260)
108 PF00106 adh_short: short chai 72.8 26 0.00056 29.9 8.7 70 157-226 2-75 (167)
109 TIGR00670 asp_carb_tr aspartat 72.1 29 0.00062 34.0 9.5 60 148-209 144-208 (301)
110 PRK09424 pntA NAD(P) transhydr 72.0 87 0.0019 33.1 13.6 50 157-209 166-215 (509)
111 PRK08628 short chain dehydroge 71.4 27 0.00058 32.4 9.0 67 156-222 8-74 (258)
112 PRK10669 putative cation:proto 71.2 68 0.0015 34.1 12.9 97 157-295 418-515 (558)
113 PRK13394 3-hydroxybutyrate deh 71.1 30 0.00064 32.0 9.3 68 156-223 8-76 (262)
114 TIGR02825 B4_12hDH leukotriene 70.9 42 0.00091 32.4 10.6 57 148-207 132-188 (325)
115 PRK08589 short chain dehydroge 70.7 23 0.00051 33.3 8.5 69 156-224 7-75 (272)
116 cd08295 double_bond_reductase_ 70.6 46 0.001 32.4 10.8 56 148-206 145-201 (338)
117 PRK12743 oxidoreductase; Provi 70.6 23 0.0005 32.9 8.4 67 156-222 3-71 (256)
118 PF00070 Pyr_redox: Pyridine n 70.3 23 0.00049 26.8 6.9 49 159-207 2-59 (80)
119 PRK08993 2-deoxy-D-gluconate 3 70.2 38 0.00083 31.4 9.8 66 156-222 11-76 (253)
120 PRK07523 gluconate 5-dehydroge 70.0 27 0.00058 32.3 8.7 69 156-224 11-80 (255)
121 PF05368 NmrA: NmrA-like famil 69.9 23 0.00049 32.5 8.1 98 159-266 2-99 (233)
122 PRK07066 3-hydroxybutyryl-CoA 69.4 96 0.0021 30.6 12.7 159 157-342 8-176 (321)
123 PRK07109 short chain dehydroge 69.3 24 0.00053 34.6 8.6 70 156-225 9-79 (334)
124 PRK08226 short chain dehydroge 69.2 29 0.00062 32.2 8.7 68 156-223 7-74 (263)
125 cd08256 Zn_ADH2 Alcohol dehydr 69.1 54 0.0012 32.0 11.0 56 148-206 168-223 (350)
126 cd08274 MDR9 Medium chain dehy 69.1 35 0.00075 33.2 9.6 57 146-206 169-225 (350)
127 TIGR01832 kduD 2-deoxy-D-gluco 68.7 37 0.00079 31.2 9.3 67 156-223 6-72 (248)
128 COG0604 Qor NADPH:quinone redu 68.3 46 0.00099 32.8 10.2 57 149-208 137-193 (326)
129 TIGR03451 mycoS_dep_FDH mycoth 68.3 44 0.00096 32.9 10.3 57 148-207 170-226 (358)
130 PRK06114 short chain dehydroge 67.9 44 0.00095 31.0 9.6 70 156-225 9-80 (254)
131 PRK08063 enoyl-(acyl carrier p 67.2 46 0.001 30.5 9.6 68 156-223 5-74 (250)
132 cd08277 liver_alcohol_DH_like 65.9 1.4E+02 0.0031 29.4 13.6 56 148-206 178-233 (365)
133 PF08659 KR: KR domain; Inter 65.4 38 0.00082 30.0 8.3 70 158-227 3-77 (181)
134 cd08293 PTGR2 Prostaglandin re 65.3 72 0.0016 30.9 11.0 58 148-208 146-207 (345)
135 cd08233 butanediol_DH_like (2R 65.0 68 0.0015 31.3 10.8 58 147-207 165-222 (351)
136 PRK07792 fabG 3-ketoacyl-(acyl 65.0 42 0.00091 32.4 9.2 70 156-225 13-84 (306)
137 PRK12937 short chain dehydroge 65.0 50 0.0011 30.1 9.3 68 156-223 6-75 (245)
138 cd08292 ETR_like_2 2-enoyl thi 64.7 58 0.0012 31.1 10.1 55 147-204 132-186 (324)
139 PRK08277 D-mannonate oxidoredu 64.6 42 0.00091 31.5 8.9 68 156-223 11-79 (278)
140 PRK05786 fabG 3-ketoacyl-(acyl 64.5 39 0.00084 30.7 8.5 67 156-223 6-73 (238)
141 TIGR00561 pntA NAD(P) transhyd 64.4 71 0.0015 33.7 11.1 51 157-210 165-215 (511)
142 PRK07097 gluconate 5-dehydroge 64.3 41 0.00089 31.4 8.8 68 156-223 11-79 (265)
143 PRK12935 acetoacetyl-CoA reduc 64.2 43 0.00093 30.7 8.8 69 156-224 7-77 (247)
144 PRK06139 short chain dehydroge 64.0 33 0.00071 33.8 8.3 71 156-226 8-79 (330)
145 PRK06128 oxidoreductase; Provi 63.9 56 0.0012 31.3 9.8 68 156-223 56-126 (300)
146 PLN03154 putative allyl alcoho 63.4 79 0.0017 31.1 11.0 57 148-207 152-209 (348)
147 PF13561 adh_short_C2: Enoyl-( 63.2 36 0.00078 31.3 8.1 46 164-209 5-52 (241)
148 cd08281 liver_ADH_like1 Zinc-d 63.1 64 0.0014 32.0 10.3 57 148-207 185-241 (371)
149 COG1751 Uncharacterized conser 62.8 57 0.0012 28.6 8.3 74 130-208 7-89 (186)
150 PF02826 2-Hacid_dh_C: D-isome 62.6 20 0.00044 31.8 6.0 117 156-297 36-154 (178)
151 PRK05557 fabG 3-ketoacyl-(acyl 62.5 59 0.0013 29.4 9.3 68 156-223 6-75 (248)
152 PRK05876 short chain dehydroge 62.1 48 0.001 31.4 8.8 68 156-223 7-75 (275)
153 cd08239 THR_DH_like L-threonin 62.0 67 0.0014 31.1 10.1 58 147-207 156-213 (339)
154 PRK08703 short chain dehydroge 61.3 85 0.0018 28.6 10.2 31 156-186 7-37 (239)
155 PRK06172 short chain dehydroge 61.3 53 0.0011 30.2 8.8 68 156-223 8-76 (253)
156 PRK08303 short chain dehydroge 61.1 58 0.0012 31.6 9.3 69 156-224 9-88 (305)
157 TIGR02822 adh_fam_2 zinc-bindi 61.0 42 0.0009 32.8 8.4 56 148-207 159-214 (329)
158 cd08284 FDH_like_2 Glutathione 60.9 1.6E+02 0.0035 28.3 12.6 52 151-205 164-215 (344)
159 cd08287 FDH_like_ADH3 formalde 60.8 91 0.002 30.2 10.8 53 149-204 163-215 (345)
160 PRK12744 short chain dehydroge 60.6 52 0.0011 30.5 8.7 68 156-223 9-81 (257)
161 PRK08643 acetoin reductase; Va 60.6 62 0.0014 29.8 9.2 69 156-224 3-72 (256)
162 PRK07478 short chain dehydroge 60.5 51 0.0011 30.4 8.6 68 156-223 7-75 (254)
163 PRK12938 acetyacetyl-CoA reduc 60.3 51 0.0011 30.1 8.5 67 156-222 4-72 (246)
164 PRK08278 short chain dehydroge 59.9 66 0.0014 30.3 9.3 68 156-223 7-82 (273)
165 PRK08217 fabG 3-ketoacyl-(acyl 59.5 57 0.0012 29.7 8.7 69 156-224 6-75 (253)
166 PRK09134 short chain dehydroge 59.5 72 0.0016 29.5 9.4 70 156-225 10-81 (258)
167 COG0078 ArgF Ornithine carbamo 59.2 43 0.00093 32.7 7.7 95 109-210 112-214 (310)
168 PRK08862 short chain dehydroge 59.1 54 0.0012 30.1 8.4 54 156-209 6-60 (227)
169 PRK07454 short chain dehydroge 59.0 55 0.0012 29.9 8.4 68 156-223 7-75 (241)
170 PRK12939 short chain dehydroge 59.0 60 0.0013 29.6 8.7 69 156-224 8-77 (250)
171 PRK08085 gluconate 5-dehydroge 58.6 64 0.0014 29.7 8.9 69 156-224 10-79 (254)
172 PRK07806 short chain dehydroge 58.5 73 0.0016 29.1 9.2 68 156-223 7-76 (248)
173 cd08297 CAD3 Cinnamyl alcohol 58.5 94 0.002 30.0 10.4 52 151-205 162-213 (341)
174 PRK08862 short chain dehydroge 58.3 1.1E+02 0.0023 28.2 10.2 84 182-272 7-94 (227)
175 PRK05866 short chain dehydroge 58.2 57 0.0012 31.2 8.7 68 156-223 41-109 (293)
176 PRK05867 short chain dehydroge 58.2 62 0.0013 29.9 8.7 68 156-223 10-78 (253)
177 PRK10309 galactitol-1-phosphat 58.0 59 0.0013 31.7 8.9 56 148-206 154-209 (347)
178 PRK07791 short chain dehydroge 57.9 68 0.0015 30.5 9.2 69 156-224 7-85 (286)
179 PRK08213 gluconate 5-dehydroge 57.9 62 0.0014 29.9 8.7 68 156-223 13-81 (259)
180 PRK08936 glucose-1-dehydrogena 57.9 79 0.0017 29.3 9.4 67 156-222 8-76 (261)
181 PRK06194 hypothetical protein; 57.7 71 0.0015 30.1 9.2 68 156-223 7-75 (287)
182 PRK06701 short chain dehydroge 57.7 81 0.0018 30.1 9.6 67 156-222 47-115 (290)
183 PRK07666 fabG 3-ketoacyl-(acyl 57.6 71 0.0015 29.1 8.9 68 156-223 8-76 (239)
184 PRK06124 gluconate 5-dehydroge 57.0 64 0.0014 29.7 8.6 69 156-224 12-81 (256)
185 TIGR03206 benzo_BadH 2-hydroxy 57.0 65 0.0014 29.4 8.6 68 156-223 4-72 (250)
186 PRK08265 short chain dehydroge 56.8 80 0.0017 29.4 9.3 67 156-224 7-73 (261)
187 PRK12779 putative bifunctional 56.8 31 0.00068 39.2 7.4 31 156-186 306-336 (944)
188 PRK07677 short chain dehydroge 56.6 68 0.0015 29.6 8.7 68 156-223 2-70 (252)
189 PRK07035 short chain dehydroge 56.6 71 0.0015 29.3 8.8 68 156-223 9-77 (252)
190 cd08296 CAD_like Cinnamyl alco 56.5 93 0.002 30.1 10.0 51 151-205 160-210 (333)
191 PRK06949 short chain dehydroge 56.5 60 0.0013 29.9 8.3 67 156-222 10-77 (258)
192 TIGR02818 adh_III_F_hyde S-(hy 56.5 68 0.0015 31.8 9.2 57 148-207 179-235 (368)
193 PRK12826 3-ketoacyl-(acyl-carr 56.1 71 0.0015 29.1 8.7 68 156-223 7-75 (251)
194 PRK12429 3-hydroxybutyrate deh 56.1 75 0.0016 29.1 8.9 68 156-223 5-73 (258)
195 PRK12771 putative glutamate sy 56.0 24 0.00052 37.5 6.1 52 157-208 138-207 (564)
196 PF00764 Arginosuc_synth: Argi 55.9 1.3E+02 0.0029 30.5 11.0 128 160-293 2-138 (388)
197 PRK12745 3-ketoacyl-(acyl-carr 55.7 82 0.0018 28.9 9.1 69 156-224 3-73 (256)
198 TIGR03325 BphB_TodD cis-2,3-di 55.6 75 0.0016 29.5 8.9 64 156-222 6-70 (262)
199 PRK07890 short chain dehydroge 55.6 69 0.0015 29.5 8.6 68 156-223 6-74 (258)
200 TIGR02853 spore_dpaA dipicolin 55.5 83 0.0018 30.4 9.2 88 113-205 108-197 (287)
201 PRK06181 short chain dehydroge 55.5 68 0.0015 29.7 8.6 69 156-224 2-71 (263)
202 PRK05653 fabG 3-ketoacyl-(acyl 55.5 89 0.0019 28.2 9.2 67 156-222 6-73 (246)
203 cd08269 Zn_ADH9 Alcohol dehydr 55.2 1.5E+02 0.0032 27.9 11.1 53 148-204 123-176 (312)
204 cd08291 ETR_like_1 2-enoyl thi 55.1 1.1E+02 0.0023 29.5 10.2 50 156-208 144-194 (324)
205 PRK06113 7-alpha-hydroxysteroi 55.0 72 0.0016 29.5 8.6 68 156-223 12-80 (255)
206 PRK09880 L-idonate 5-dehydroge 55.0 95 0.002 30.3 9.8 52 153-207 168-219 (343)
207 PRK10754 quinone oxidoreductas 54.9 1.5E+02 0.0032 28.3 11.1 55 148-205 134-188 (327)
208 PRK06077 fabG 3-ketoacyl-(acyl 54.9 67 0.0014 29.4 8.3 68 156-223 7-76 (252)
209 cd08242 MDR_like Medium chain 54.9 86 0.0019 30.0 9.4 56 147-206 148-203 (319)
210 PRK05717 oxidoreductase; Valid 54.8 87 0.0019 28.9 9.1 64 156-221 11-74 (255)
211 cd08289 MDR_yhfp_like Yhfp put 54.4 89 0.0019 29.8 9.4 47 156-205 148-194 (326)
212 cd08285 NADP_ADH NADP(H)-depen 54.3 1.2E+02 0.0026 29.6 10.4 55 148-205 160-214 (351)
213 PRK06198 short chain dehydroge 54.2 93 0.002 28.6 9.2 68 156-223 7-76 (260)
214 PRK07985 oxidoreductase; Provi 54.0 79 0.0017 30.2 8.9 69 156-224 50-121 (294)
215 COG2085 Predicted dinucleotide 53.6 1.3E+02 0.0028 27.9 9.6 32 158-189 3-34 (211)
216 PF01041 DegT_DnrJ_EryC1: DegT 53.6 36 0.00079 33.8 6.6 56 156-211 40-95 (363)
217 PTZ00354 alcohol dehydrogenase 53.5 1.5E+02 0.0031 28.3 10.8 54 150-206 136-189 (334)
218 KOG0025 Zn2+-binding dehydroge 53.4 1.1E+02 0.0023 30.0 9.3 87 120-210 124-217 (354)
219 PF09837 DUF2064: Uncharacteri 53.4 1.3E+02 0.0029 25.0 10.5 97 172-274 3-100 (122)
220 PRK06947 glucose-1-dehydrogena 52.8 66 0.0014 29.4 7.9 67 156-222 3-71 (248)
221 PRK06138 short chain dehydroge 52.8 91 0.002 28.4 8.9 67 156-223 6-73 (252)
222 cd00401 AdoHcyase S-adenosyl-L 52.8 39 0.00084 34.6 6.7 47 157-206 203-249 (413)
223 cd08185 Fe-ADH1 Iron-containin 52.2 82 0.0018 31.6 9.0 89 181-276 4-97 (380)
224 TIGR02415 23BDH acetoin reduct 52.0 96 0.0021 28.4 8.9 67 157-223 2-69 (254)
225 PRK12859 3-ketoacyl-(acyl-carr 51.8 74 0.0016 29.5 8.1 71 156-226 7-91 (256)
226 TIGR00730 conserved hypothetic 51.7 1.6E+02 0.0035 26.3 9.9 87 248-348 18-105 (178)
227 PLN02740 Alcohol dehydrogenase 51.6 1.3E+02 0.0028 30.0 10.3 57 148-207 192-248 (381)
228 PRK15454 ethanol dehydrogenase 51.6 64 0.0014 32.8 8.1 92 178-276 24-120 (395)
229 PRK06500 short chain dehydroge 51.4 1.1E+02 0.0023 27.9 9.1 53 156-211 7-60 (249)
230 PRK08594 enoyl-(acyl carrier p 51.4 1.1E+02 0.0023 28.6 9.1 70 156-225 8-81 (257)
231 PRK08264 short chain dehydroge 51.4 58 0.0012 29.6 7.2 61 156-222 7-68 (238)
232 PRK14030 glutamate dehydrogena 51.4 87 0.0019 32.4 9.0 48 137-185 209-257 (445)
233 cd08243 quinone_oxidoreductase 51.3 1.7E+02 0.0037 27.5 10.8 54 150-206 138-191 (320)
234 PF00185 OTCace: Aspartate/orn 51.3 61 0.0013 28.3 6.9 52 158-209 4-65 (158)
235 TIGR00696 wecB_tagA_cpsF bacte 51.1 1.2E+02 0.0026 27.2 8.9 95 168-273 13-112 (177)
236 cd08170 GlyDH Glycerol dehydro 51.0 54 0.0012 32.5 7.4 41 252-295 67-108 (351)
237 PRK05396 tdh L-threonine 3-deh 50.9 85 0.0018 30.4 8.7 50 154-206 163-212 (341)
238 cd08251 polyketide_synthase po 50.9 1.8E+02 0.0039 27.0 10.8 55 147-204 113-167 (303)
239 PF01262 AlaDh_PNT_C: Alanine 50.8 57 0.0012 28.6 6.8 50 157-209 21-70 (168)
240 PRK09730 putative NAD(P)-bindi 50.7 1E+02 0.0023 27.9 8.9 69 157-225 3-73 (247)
241 PRK10490 sensor protein KdpD; 50.5 1.3E+02 0.0029 34.0 11.1 108 156-270 251-375 (895)
242 cd07766 DHQ_Fe-ADH Dehydroquin 50.4 2.4E+02 0.0053 27.4 11.9 15 261-276 78-92 (332)
243 PRK07814 short chain dehydroge 50.3 91 0.002 29.0 8.5 69 156-224 11-80 (263)
244 PLN02253 xanthoxin dehydrogena 50.3 81 0.0018 29.6 8.2 32 156-187 19-50 (280)
245 PRK09242 tropinone reductase; 50.0 1E+02 0.0022 28.4 8.8 69 156-224 10-81 (257)
246 PRK08306 dipicolinate synthase 50.0 1.4E+02 0.0031 28.9 9.9 47 157-206 153-199 (296)
247 cd08300 alcohol_DH_class_III c 49.9 83 0.0018 31.1 8.6 57 148-207 180-236 (368)
248 PRK07904 short chain dehydroge 49.6 1.2E+02 0.0025 28.2 9.1 56 156-211 9-68 (253)
249 cd08301 alcohol_DH_plants Plan 49.6 1E+02 0.0023 30.3 9.2 55 150-207 183-237 (369)
250 TIGR01963 PHB_DH 3-hydroxybuty 49.4 97 0.0021 28.3 8.5 68 156-223 2-70 (255)
251 PRK06720 hypothetical protein; 49.3 1.3E+02 0.0029 26.4 8.9 31 156-186 17-47 (169)
252 cd08245 CAD Cinnamyl alcohol d 48.9 1.2E+02 0.0025 29.2 9.2 54 150-207 158-211 (330)
253 PRK09423 gldA glycerol dehydro 48.8 89 0.0019 31.2 8.6 23 253-276 75-98 (366)
254 PRK08642 fabG 3-ketoacyl-(acyl 48.7 1.3E+02 0.0029 27.4 9.3 65 156-222 6-71 (253)
255 cd08282 PFDH_like Pseudomonas 48.6 1E+02 0.0022 30.6 9.0 55 148-205 170-224 (375)
256 cd08288 MDR_yhdh Yhdh putative 48.6 1.2E+02 0.0026 28.8 9.3 49 155-206 147-195 (324)
257 smart00822 PKS_KR This enzymat 48.6 1.1E+02 0.0025 25.5 8.3 55 157-211 2-61 (180)
258 PRK07774 short chain dehydroge 48.5 1.3E+02 0.0028 27.5 9.1 67 156-222 7-74 (250)
259 cd08176 LPO Lactadehyde:propan 48.5 87 0.0019 31.4 8.5 91 179-276 4-99 (377)
260 PRK07062 short chain dehydroge 48.3 1.2E+02 0.0026 28.0 9.0 70 156-225 9-81 (265)
261 PRK02610 histidinol-phosphate 48.2 1.1E+02 0.0025 30.2 9.3 55 157-211 92-146 (374)
262 cd08298 CAD2 Cinnamyl alcohol 47.8 1E+02 0.0023 29.5 8.8 53 148-204 161-213 (329)
263 PRK07231 fabG 3-ketoacyl-(acyl 47.6 1.4E+02 0.003 27.2 9.2 65 156-221 6-71 (251)
264 cd08250 Mgc45594_like Mgc45594 47.5 2.2E+02 0.0048 27.1 11.0 53 149-204 134-186 (329)
265 PRK05565 fabG 3-ketoacyl-(acyl 47.4 1.3E+02 0.0028 27.3 8.9 67 156-222 6-74 (247)
266 cd08244 MDR_enoyl_red Possible 47.4 2.2E+02 0.0047 26.9 10.9 55 147-204 135-189 (324)
267 PF02737 3HCDH_N: 3-hydroxyacy 47.4 32 0.00069 30.7 4.6 158 159-345 2-174 (180)
268 PRK12825 fabG 3-ketoacyl-(acyl 47.3 1.5E+02 0.0033 26.6 9.4 67 156-222 7-75 (249)
269 PRK09291 short chain dehydroge 47.2 65 0.0014 29.6 6.9 56 156-211 3-59 (257)
270 PRK12747 short chain dehydroge 47.1 91 0.002 28.6 7.9 56 156-211 5-62 (252)
271 TIGR01751 crot-CoA-red crotony 47.1 1.1E+02 0.0024 30.6 9.1 56 150-208 185-240 (398)
272 cd08246 crotonyl_coA_red croto 47.0 1E+02 0.0022 30.7 8.7 54 151-207 190-243 (393)
273 PRK07576 short chain dehydroge 46.9 1.3E+02 0.0027 28.1 8.9 69 156-224 10-79 (264)
274 COG2130 Putative NADP-dependen 46.8 1.4E+02 0.003 29.5 8.9 58 147-207 143-201 (340)
275 TIGR01831 fabG_rel 3-oxoacyl-( 46.7 1E+02 0.0023 27.9 8.2 65 159-223 2-68 (239)
276 KOG3857 Alcohol dehydrogenase, 46.7 54 0.0012 32.7 6.2 83 188-275 55-140 (465)
277 PRK08339 short chain dehydroge 46.7 1.1E+02 0.0024 28.6 8.5 70 156-225 9-80 (263)
278 PRK06123 short chain dehydroge 46.4 88 0.0019 28.5 7.7 69 156-224 3-73 (248)
279 TIGR01316 gltA glutamate synth 46.3 73 0.0016 32.8 7.7 52 157-208 273-329 (449)
280 cd08278 benzyl_alcohol_DH Benz 46.3 1.8E+02 0.0038 28.7 10.3 55 149-206 181-235 (365)
281 cd08261 Zn_ADH7 Alcohol dehydr 46.3 2E+02 0.0044 27.6 10.5 53 148-204 153-205 (337)
282 PLN02702 L-idonate 5-dehydroge 46.2 1.5E+02 0.0032 29.1 9.7 57 148-207 175-231 (364)
283 PRK08416 7-alpha-hydroxysteroi 46.1 1.4E+02 0.003 27.7 9.1 69 156-224 9-80 (260)
284 PRK07775 short chain dehydroge 46.1 1.4E+02 0.0031 27.9 9.2 68 156-223 11-79 (274)
285 PRK07550 hypothetical protein; 46.0 2.5E+02 0.0055 27.8 11.4 77 131-211 67-144 (386)
286 PRK08251 short chain dehydroge 46.0 1.4E+02 0.003 27.3 8.9 68 156-223 3-73 (248)
287 KOG1201 Hydroxysteroid 17-beta 45.8 1.6E+02 0.0034 28.8 9.2 73 156-229 39-113 (300)
288 cd05288 PGDH Prostaglandin deh 45.7 2.3E+02 0.005 27.0 10.8 53 149-204 140-193 (329)
289 PRK09072 short chain dehydroge 45.7 1.2E+02 0.0026 28.1 8.5 69 156-225 6-75 (263)
290 cd08231 MDR_TM0436_like Hypoth 45.7 3E+02 0.0064 26.8 13.5 53 149-205 172-225 (361)
291 COG0026 PurK Phosphoribosylami 45.5 38 0.00082 34.0 5.1 33 158-190 3-35 (375)
292 PRK09860 putative alcohol dehy 45.5 95 0.002 31.3 8.2 92 179-276 7-102 (383)
293 cd08187 BDH Butanol dehydrogen 45.5 2.1E+02 0.0045 28.8 10.7 90 180-276 6-100 (382)
294 TIGR01829 AcAcCoA_reduct aceto 45.2 1E+02 0.0022 27.8 7.9 67 157-223 2-70 (242)
295 TIGR03282 methan_mark_13 putat 45.1 54 0.0012 32.6 6.0 117 252-376 68-197 (352)
296 PRK05650 short chain dehydroge 44.9 1.3E+02 0.0028 28.0 8.7 66 157-222 2-68 (270)
297 TIGR02824 quinone_pig3 putativ 44.7 2.4E+02 0.0053 26.3 10.7 54 148-204 133-186 (325)
298 cd08253 zeta_crystallin Zeta-c 44.7 2.5E+02 0.0055 26.1 10.8 52 150-204 140-191 (325)
299 cd08240 6_hydroxyhexanoate_dh_ 44.6 1.6E+02 0.0035 28.5 9.6 49 154-205 175-223 (350)
300 PRK13243 glyoxylate reductase; 44.4 1.6E+02 0.0034 29.1 9.4 105 156-284 150-256 (333)
301 cd08235 iditol_2_DH_like L-idi 44.1 2.7E+02 0.0058 26.7 11.1 54 148-204 159-212 (343)
302 cd08258 Zn_ADH4 Alcohol dehydr 44.1 2.2E+02 0.0048 27.1 10.4 54 149-204 159-212 (306)
303 COG1064 AdhP Zn-dependent alco 44.1 1.2E+02 0.0025 30.3 8.3 62 144-209 156-217 (339)
304 PTZ00079 NADP-specific glutama 44.1 1.3E+02 0.0029 31.1 9.0 49 137-185 218-266 (454)
305 PRK10538 malonic semialdehyde 44.0 1.6E+02 0.0034 27.0 9.0 63 157-222 2-65 (248)
306 PRK08220 2,3-dihydroxybenzoate 43.8 1.2E+02 0.0025 27.7 8.1 60 156-223 9-68 (252)
307 cd05188 MDR Medium chain reduc 43.7 2.1E+02 0.0046 25.9 9.8 52 150-205 130-181 (271)
308 PRK12746 short chain dehydroge 43.6 1.6E+02 0.0035 26.9 9.0 68 156-223 7-76 (254)
309 PRK07856 short chain dehydroge 43.5 1.1E+02 0.0024 28.1 7.9 61 156-223 7-67 (252)
310 PRK12809 putative oxidoreducta 43.5 46 0.00099 36.0 5.9 53 156-208 310-380 (639)
311 PRK05872 short chain dehydroge 43.4 1.2E+02 0.0026 29.0 8.3 65 156-223 10-77 (296)
312 TIGR01064 pyruv_kin pyruvate k 43.3 4.1E+02 0.0088 27.8 14.9 122 171-298 262-406 (473)
313 PRK10537 voltage-gated potassi 43.2 3.6E+02 0.0078 27.4 11.9 97 156-296 240-337 (393)
314 COG1454 EutG Alcohol dehydroge 43.1 1.2E+02 0.0027 30.6 8.4 91 180-276 6-100 (377)
315 TIGR00692 tdh L-threonine 3-de 43.1 1.5E+02 0.0033 28.6 9.2 51 152-205 159-209 (340)
316 PRK12748 3-ketoacyl-(acyl-carr 43.0 1.7E+02 0.0036 27.0 9.0 68 156-223 6-87 (256)
317 cd08259 Zn_ADH5 Alcohol dehydr 43.0 1.7E+02 0.0038 27.7 9.4 52 150-204 158-209 (332)
318 PRK07067 sorbitol dehydrogenas 43.0 1.8E+02 0.0038 26.8 9.2 66 156-223 7-72 (257)
319 KOG2862 Alanine-glyoxylate ami 43.0 3.2E+02 0.0069 27.1 10.7 17 195-211 108-124 (385)
320 cd05313 NAD_bind_2_Glu_DH NAD( 42.9 1.7E+02 0.0038 27.8 9.0 51 137-187 19-69 (254)
321 PRK07063 short chain dehydroge 42.8 1.6E+02 0.0034 27.1 8.9 67 156-222 8-77 (260)
322 PRK09422 ethanol-active dehydr 42.8 2.1E+02 0.0044 27.5 10.0 55 148-206 156-211 (338)
323 PRK08261 fabG 3-ketoacyl-(acyl 42.8 1.7E+02 0.0038 29.7 9.9 68 156-225 211-278 (450)
324 cd08191 HHD 6-hydroxyhexanoate 42.7 1.6E+02 0.0035 29.6 9.4 87 184-276 4-93 (386)
325 cd05282 ETR_like 2-enoyl thioe 42.6 1.9E+02 0.0041 27.3 9.6 53 149-204 133-185 (323)
326 PRK06924 short chain dehydroge 42.5 1.4E+02 0.0031 27.2 8.4 64 157-221 3-66 (251)
327 cd05286 QOR2 Quinone oxidoredu 42.2 2.7E+02 0.0059 25.8 10.6 53 149-204 131-183 (320)
328 TIGR01830 3oxo_ACP_reduc 3-oxo 42.2 1.6E+02 0.0035 26.4 8.7 65 159-223 2-68 (239)
329 cd05278 FDH_like Formaldehyde 42.1 1.4E+02 0.003 28.8 8.7 53 149-204 162-214 (347)
330 PLN02583 cinnamoyl-CoA reducta 42.1 1.5E+02 0.0033 28.3 8.8 33 156-188 7-39 (297)
331 KOG0023 Alcohol dehydrogenase, 42.0 1.6E+02 0.0035 29.2 8.6 61 146-210 174-234 (360)
332 COG1611 Predicted Rossmann fol 41.8 2.6E+02 0.0056 25.7 9.7 118 247-378 32-152 (205)
333 PRK07326 short chain dehydroge 41.7 1.5E+02 0.0033 26.7 8.4 31 156-186 7-37 (237)
334 cd05281 TDH Threonine dehydrog 41.7 1.3E+02 0.0029 29.0 8.5 49 154-205 163-211 (341)
335 PRK06101 short chain dehydroge 41.6 1.3E+02 0.0029 27.4 8.1 64 157-223 3-66 (240)
336 PRK12384 sorbitol-6-phosphate 41.5 1.9E+02 0.0042 26.5 9.2 68 156-223 3-73 (259)
337 PF02887 PK_C: Pyruvate kinase 41.5 1.5E+02 0.0032 24.2 7.4 79 141-227 7-86 (117)
338 PRK06079 enoyl-(acyl carrier p 41.4 1.8E+02 0.0038 26.9 8.9 31 156-186 8-40 (252)
339 PRK07370 enoyl-(acyl carrier p 41.4 1.7E+02 0.0036 27.2 8.8 70 156-225 7-81 (258)
340 TIGR02095 glgA glycogen/starch 41.3 1.1E+02 0.0023 31.5 8.1 28 163-190 18-45 (473)
341 cd08264 Zn_ADH_like2 Alcohol d 41.2 1.4E+02 0.003 28.5 8.4 37 149-185 157-193 (325)
342 PF03807 F420_oxidored: NADP o 41.1 1.3E+02 0.0028 23.1 6.8 47 159-207 2-52 (96)
343 PRK10083 putative oxidoreducta 41.0 2.2E+02 0.0048 27.3 9.9 59 146-207 152-211 (339)
344 PRK06182 short chain dehydroge 40.8 2.3E+02 0.0049 26.4 9.7 63 156-223 4-66 (273)
345 PF04127 DFP: DNA / pantothena 40.8 66 0.0014 29.0 5.6 49 156-210 20-68 (185)
346 PRK12824 acetoacetyl-CoA reduc 40.8 1.9E+02 0.0041 26.1 8.9 69 157-225 4-74 (245)
347 PRK06348 aspartate aminotransf 40.5 2.8E+02 0.0061 27.5 10.8 78 129-210 64-142 (384)
348 PRK08340 glucose-1-dehydrogena 40.5 1.4E+02 0.0029 27.7 8.0 66 157-223 2-68 (259)
349 PRK07533 enoyl-(acyl carrier p 40.4 1.7E+02 0.0037 27.2 8.7 32 156-187 11-44 (258)
350 PRK12828 short chain dehydroge 40.2 1.9E+02 0.0042 25.8 8.9 55 156-210 8-63 (239)
351 cd08299 alcohol_DH_class_I_II_ 40.2 2.3E+02 0.005 28.0 10.1 54 148-204 184-237 (373)
352 PRK06200 2,3-dihydroxy-2,3-dih 40.2 1.8E+02 0.0038 26.9 8.7 64 156-222 7-71 (263)
353 PLN02527 aspartate carbamoyltr 40.0 2.2E+02 0.0049 27.8 9.6 60 148-209 145-210 (306)
354 cd08181 PPD-like 1,3-propanedi 40.0 1.6E+02 0.0034 29.3 8.8 89 181-276 4-97 (357)
355 PRK07023 short chain dehydroge 39.9 1.3E+02 0.0029 27.3 7.8 60 157-220 3-62 (243)
356 PRK12831 putative oxidoreducta 39.8 1.1E+02 0.0023 31.8 7.7 52 157-208 282-338 (464)
357 PRK12827 short chain dehydroge 39.8 2.1E+02 0.0045 25.9 9.1 68 156-223 7-79 (249)
358 PRK08192 aspartate carbamoyltr 39.7 1.2E+02 0.0025 30.3 7.6 54 157-210 160-219 (338)
359 cd05279 Zn_ADH1 Liver alcohol 39.5 2.4E+02 0.0052 27.7 10.0 54 148-204 177-230 (365)
360 PRK07831 short chain dehydroge 39.5 2E+02 0.0044 26.5 9.1 69 156-224 18-90 (262)
361 PRK06940 short chain dehydroge 39.5 2E+02 0.0043 27.1 9.1 68 158-226 4-72 (275)
362 cd05285 sorbitol_DH Sorbitol d 39.4 2.1E+02 0.0046 27.6 9.5 57 147-206 155-211 (343)
363 cd08276 MDR7 Medium chain dehy 39.3 3.4E+02 0.0073 25.7 10.9 53 150-206 156-208 (336)
364 PRK09147 succinyldiaminopimela 39.3 3.8E+02 0.0082 26.7 11.5 80 130-211 64-147 (396)
365 PRK07984 enoyl-(acyl carrier p 39.3 1.8E+02 0.0039 27.2 8.7 70 156-225 7-78 (262)
366 cd08279 Zn_ADH_class_III Class 39.2 3E+02 0.0065 26.9 10.6 53 149-204 177-229 (363)
367 COG0796 MurI Glutamate racemas 39.1 3.6E+02 0.0078 26.0 12.6 117 250-377 55-187 (269)
368 TIGR03552 F420_cofC 2-phospho- 39.1 2.7E+02 0.0059 24.5 10.3 70 197-272 60-129 (195)
369 PRK07102 short chain dehydroge 39.0 2.5E+02 0.0053 25.5 9.4 67 156-222 2-70 (243)
370 TIGR02817 adh_fam_1 zinc-bindi 38.9 1.8E+02 0.004 27.8 8.9 48 155-205 149-197 (336)
371 cd08267 MDR1 Medium chain dehy 38.8 1.9E+02 0.004 27.2 8.8 51 150-204 139-189 (319)
372 PRK04284 ornithine carbamoyltr 38.7 2.1E+02 0.0046 28.3 9.3 52 158-209 157-216 (332)
373 PRK06180 short chain dehydroge 38.7 2E+02 0.0044 26.9 9.0 65 156-223 5-70 (277)
374 cd08551 Fe-ADH iron-containing 38.7 1.5E+02 0.0033 29.5 8.4 86 184-276 4-94 (370)
375 COG0300 DltE Short-chain dehyd 38.5 2.2E+02 0.0047 27.4 9.0 68 156-223 7-76 (265)
376 COG0240 GpsA Glycerol-3-phosph 38.5 48 0.001 32.8 4.6 31 158-188 3-33 (329)
377 PRK06841 short chain dehydroge 38.4 1.9E+02 0.004 26.5 8.6 32 156-187 16-47 (255)
378 cd08254 hydroxyacyl_CoA_DH 6-h 38.3 3E+02 0.0065 26.2 10.3 54 149-206 160-213 (338)
379 PRK11706 TDP-4-oxo-6-deoxy-D-g 38.2 1.3E+02 0.0029 29.8 8.0 55 157-211 47-101 (375)
380 PRK08017 oxidoreductase; Provi 38.2 2.3E+02 0.005 25.8 9.2 51 157-210 4-54 (256)
381 PF13460 NAD_binding_10: NADH( 38.1 1E+02 0.0022 26.7 6.4 46 159-209 2-47 (183)
382 PRK12769 putative oxidoreducta 37.9 59 0.0013 35.2 5.7 51 157-207 328-396 (654)
383 cd08262 Zn_ADH8 Alcohol dehydr 37.9 2.4E+02 0.0051 27.2 9.5 55 147-204 154-208 (341)
384 PF01494 FAD_binding_3: FAD bi 37.9 43 0.00094 32.1 4.3 31 158-188 3-33 (356)
385 PF11814 DUF3335: Peptidase_C3 37.6 71 0.0015 29.5 5.3 34 156-189 42-77 (207)
386 cd08255 2-desacetyl-2-hydroxye 37.5 2E+02 0.0042 26.7 8.7 51 148-202 91-142 (277)
387 cd05284 arabinose_DH_like D-ar 37.5 3.1E+02 0.0066 26.3 10.3 49 152-204 165-214 (340)
388 PRK08690 enoyl-(acyl carrier p 37.4 1.7E+02 0.0037 27.2 8.2 68 156-224 7-77 (261)
389 cd02191 FtsZ FtsZ is a GTPase 37.4 2.3E+02 0.005 27.6 9.2 43 253-298 77-124 (303)
390 PLN00175 aminotransferase fami 37.3 3.5E+02 0.0077 27.3 11.0 77 131-210 91-168 (413)
391 COG4558 ChuT ABC-type hemin tr 37.3 1.7E+02 0.0038 28.4 7.9 21 191-211 111-131 (300)
392 PRK06483 dihydromonapterin red 37.3 2.7E+02 0.0059 25.1 9.4 52 156-209 3-54 (236)
393 PRK08267 short chain dehydroge 37.3 1.6E+02 0.0035 27.1 8.0 65 156-223 2-68 (260)
394 PLN02586 probable cinnamyl alc 37.3 1.5E+02 0.0033 29.2 8.2 55 150-207 179-233 (360)
395 TIGR02823 oxido_YhdH putative 37.2 2.2E+02 0.0048 27.0 9.2 50 152-204 142-192 (323)
396 TIGR03538 DapC_gpp succinyldia 37.2 2E+02 0.0043 28.7 9.1 79 130-210 63-145 (393)
397 KOG0024 Sorbitol dehydrogenase 36.9 3E+02 0.0064 27.4 9.6 62 145-209 160-221 (354)
398 PRK07201 short chain dehydroge 36.7 1.4E+02 0.0031 31.9 8.4 68 156-223 372-440 (657)
399 cd08241 QOR1 Quinone oxidoredu 36.4 3.6E+02 0.0077 25.1 10.7 53 149-204 134-186 (323)
400 PRK14807 histidinol-phosphate 36.3 2.1E+02 0.0046 28.0 9.0 53 158-211 78-130 (351)
401 cd08260 Zn_ADH6 Alcohol dehydr 36.2 3.4E+02 0.0073 26.1 10.4 51 149-203 160-210 (345)
402 PF00091 Tubulin: Tubulin/FtsZ 36.1 1.1E+02 0.0023 28.1 6.4 93 242-335 94-204 (216)
403 PRK08945 putative oxoacyl-(acy 36.1 2.5E+02 0.0055 25.5 9.1 32 156-187 13-44 (247)
404 PLN02827 Alcohol dehydrogenase 35.7 2.5E+02 0.0053 28.0 9.4 56 148-206 187-242 (378)
405 cd08270 MDR4 Medium chain dehy 35.6 2.8E+02 0.0061 25.9 9.5 49 154-205 132-180 (305)
406 PRK12936 3-ketoacyl-(acyl-carr 35.5 2.6E+02 0.0056 25.2 9.0 64 156-222 7-71 (245)
407 cd08193 HVD 5-hydroxyvalerate 35.4 4.2E+02 0.0091 26.4 11.1 90 180-276 3-97 (376)
408 cd05283 CAD1 Cinnamyl alcohol 35.4 2.4E+02 0.0052 27.2 9.1 52 152-207 167-218 (337)
409 PRK06125 short chain dehydroge 35.4 1.3E+02 0.0028 27.8 7.0 68 156-223 8-77 (259)
410 cd08550 GlyDH-like Glycerol_de 35.1 1.3E+02 0.0029 29.7 7.4 33 261-296 77-109 (349)
411 PRK12810 gltD glutamate syntha 35.0 1.5E+02 0.0032 30.7 7.9 76 132-207 112-212 (471)
412 COG2242 CobL Precorrin-6B meth 35.0 54 0.0012 29.8 4.0 28 157-186 36-63 (187)
413 PRK07832 short chain dehydroge 34.8 1.5E+02 0.0033 27.6 7.4 49 157-205 2-51 (272)
414 cd08234 threonine_DH_like L-th 34.8 3.2E+02 0.0068 26.1 9.9 54 148-204 153-206 (334)
415 PRK06847 hypothetical protein; 34.6 55 0.0012 32.2 4.5 30 157-186 5-34 (375)
416 PTZ00345 glycerol-3-phosphate 34.6 1.1E+02 0.0024 30.7 6.6 49 156-204 11-68 (365)
417 PRK12480 D-lactate dehydrogena 34.5 2.2E+02 0.0047 28.2 8.6 102 157-284 147-250 (330)
418 PRK09126 hypothetical protein; 34.3 50 0.0011 32.8 4.2 29 158-186 5-33 (392)
419 PLN02342 ornithine carbamoyltr 34.2 1.3E+02 0.0029 30.0 7.0 60 148-209 188-251 (348)
420 PRK13581 D-3-phosphoglycerate 34.2 3.5E+02 0.0077 28.5 10.7 105 156-284 140-246 (526)
421 TIGR00877 purD phosphoribosyla 34.2 5E+02 0.011 26.1 11.7 30 159-188 3-32 (423)
422 PF13478 XdhC_C: XdhC Rossmann 34.2 53 0.0011 28.1 3.7 31 159-189 1-31 (136)
423 PLN02256 arogenate dehydrogena 34.1 4.5E+02 0.0097 25.6 17.1 117 156-302 36-158 (304)
424 PF12000 Glyco_trans_4_3: Gkyc 34.1 70 0.0015 28.6 4.6 41 248-294 54-94 (171)
425 TIGR01182 eda Entner-Doudoroff 33.9 3.8E+02 0.0082 24.6 13.1 129 140-292 23-152 (204)
426 COG2518 Pcm Protein-L-isoaspar 33.8 1.8E+02 0.0038 27.0 7.2 94 157-271 74-171 (209)
427 TIGR02379 ECA_wecE TDP-4-keto- 33.7 2.4E+02 0.0053 28.2 9.0 55 157-211 47-101 (376)
428 PRK06463 fabG 3-ketoacyl-(acyl 33.6 3.7E+02 0.008 24.6 9.8 64 156-223 8-71 (255)
429 TIGR01318 gltD_gamma_fam gluta 33.6 1.6E+02 0.0034 30.5 7.8 51 157-207 142-210 (467)
430 PLN02918 pyridoxine (pyridoxam 33.6 2.3E+02 0.005 30.2 9.0 50 156-205 136-192 (544)
431 PRK04870 histidinol-phosphate 33.6 2.7E+02 0.0059 27.2 9.3 53 158-211 83-135 (356)
432 PRK06505 enoyl-(acyl carrier p 33.5 2.1E+02 0.0045 26.9 8.1 31 156-186 8-40 (271)
433 PF13450 NAD_binding_8: NAD(P) 33.5 61 0.0013 23.9 3.5 28 162-189 2-29 (68)
434 PRK07889 enoyl-(acyl carrier p 33.3 2.4E+02 0.0051 26.2 8.4 68 156-224 8-78 (256)
435 PRK05166 histidinol-phosphate 33.3 2.3E+02 0.005 27.9 8.8 53 158-211 90-142 (371)
436 cd08173 Gro1PDH Sn-glycerol-1- 33.3 3.8E+02 0.0082 26.3 10.2 107 181-297 2-111 (339)
437 PRK11891 aspartate carbamoyltr 33.2 1.8E+02 0.004 30.0 8.0 52 158-209 243-300 (429)
438 PRK07097 gluconate 5-dehydroge 33.0 3.9E+02 0.0085 24.6 10.1 87 181-273 11-99 (265)
439 cd08272 MDR6 Medium chain dehy 33.0 4.1E+02 0.0089 24.8 10.3 54 148-205 138-191 (326)
440 PRK13376 pyrB bifunctional asp 32.9 1.4E+02 0.0031 31.6 7.3 53 157-209 175-233 (525)
441 cd05280 MDR_yhdh_yhfp Yhdh and 32.9 3.1E+02 0.0066 25.9 9.4 46 157-205 149-194 (325)
442 PRK00779 ornithine carbamoyltr 32.7 1.5E+02 0.0034 28.9 7.2 61 148-209 146-209 (304)
443 cd08249 enoyl_reductase_like e 32.6 2.2E+02 0.0047 27.6 8.4 48 153-204 153-200 (339)
444 PRK06197 short chain dehydroge 32.4 2.2E+02 0.0048 27.1 8.3 68 156-223 17-87 (306)
445 PRK05693 short chain dehydroge 32.3 3.7E+02 0.008 24.9 9.6 50 157-209 3-52 (274)
446 PF12831 FAD_oxidored: FAD dep 32.3 55 0.0012 33.5 4.1 31 159-189 2-32 (428)
447 PRK12829 short chain dehydroge 32.3 2.9E+02 0.0063 25.2 8.8 32 156-187 12-43 (264)
448 TIGR02638 lactal_redase lactal 32.1 2.2E+02 0.0048 28.6 8.4 90 179-275 5-99 (379)
449 cd02201 FtsZ_type1 FtsZ is a G 31.9 93 0.002 30.3 5.5 43 253-298 77-124 (304)
450 PRK08594 enoyl-(acyl carrier p 31.9 4.1E+02 0.0088 24.6 9.8 84 181-272 8-98 (257)
451 PLN03139 formate dehydrogenase 31.8 3.6E+02 0.0078 27.4 9.8 107 156-284 199-307 (386)
452 PRK12743 oxidoreductase; Provi 31.8 4E+02 0.0088 24.4 10.1 75 192-273 16-92 (256)
453 PF11760 CbiG_N: Cobalamin syn 31.8 82 0.0018 24.7 4.1 46 255-300 5-50 (84)
454 PRK05875 short chain dehydroge 31.7 2.6E+02 0.0057 25.9 8.5 67 156-222 8-77 (276)
455 PRK09853 putative selenate red 31.6 1E+02 0.0023 35.3 6.4 51 157-207 540-608 (1019)
456 PRK06836 aspartate aminotransf 31.5 4.5E+02 0.0097 26.2 10.6 53 158-211 98-150 (394)
457 PRK11154 fadJ multifunctional 31.4 4.9E+02 0.011 28.6 11.5 32 157-188 310-342 (708)
458 cd08286 FDH_like_ADH2 formalde 31.4 3.4E+02 0.0074 26.1 9.5 50 151-204 163-213 (345)
459 COG2185 Sbm Methylmalonyl-CoA 31.3 1.6E+02 0.0036 25.5 6.2 83 193-286 31-115 (143)
460 PRK07453 protochlorophyllide o 31.3 2.5E+02 0.0053 27.1 8.4 68 156-223 7-75 (322)
461 PRK06482 short chain dehydroge 31.2 3.5E+02 0.0076 25.1 9.3 63 156-221 3-66 (276)
462 PRK05854 short chain dehydroge 31.1 2.6E+02 0.0057 26.9 8.5 67 156-222 15-84 (313)
463 PRK03692 putative UDP-N-acetyl 31.0 1.8E+02 0.0039 27.5 7.1 93 169-273 70-169 (243)
464 PRK08068 transaminase; Reviewe 31.0 4.5E+02 0.0098 26.0 10.5 78 131-211 70-148 (389)
465 cd08283 FDH_like_1 Glutathione 31.0 2.8E+02 0.0061 27.5 9.0 55 148-205 178-233 (386)
466 PRK07024 short chain dehydroge 30.9 2.7E+02 0.0057 25.6 8.3 65 156-224 3-71 (257)
467 cd08189 Fe-ADH5 Iron-containin 30.9 2.6E+02 0.0056 28.0 8.6 88 182-276 5-97 (374)
468 PRK06139 short chain dehydroge 30.8 3.1E+02 0.0067 26.9 9.1 84 181-272 8-95 (330)
469 KOG1205 Predicted dehydrogenas 30.7 2.8E+02 0.006 26.9 8.4 68 156-223 13-83 (282)
470 PRK09186 flagellin modificatio 30.7 2.7E+02 0.0058 25.4 8.3 32 156-187 5-36 (256)
471 PRK09257 aromatic amino acid a 30.7 3.8E+02 0.0083 26.6 10.0 79 129-210 67-149 (396)
472 cd08183 Fe-ADH2 Iron-containin 30.6 2.7E+02 0.0058 27.9 8.7 84 184-276 4-89 (374)
473 PRK07825 short chain dehydroge 30.6 3.2E+02 0.0069 25.3 8.9 32 156-187 6-37 (273)
474 PRK08415 enoyl-(acyl carrier p 30.5 2.6E+02 0.0057 26.3 8.3 69 156-225 6-77 (274)
475 PRK13984 putative oxidoreducta 30.5 1.6E+02 0.0035 31.4 7.5 51 157-207 284-352 (604)
476 PRK10624 L-1,2-propanediol oxi 30.4 2.3E+02 0.005 28.4 8.3 91 179-276 6-101 (382)
477 PRK06753 hypothetical protein; 30.4 70 0.0015 31.5 4.5 29 158-186 2-30 (373)
478 PLN02686 cinnamoyl-CoA reducta 30.4 2.2E+02 0.0048 28.2 8.1 33 156-188 54-86 (367)
479 PRK13018 cell division protein 30.4 2E+02 0.0044 29.1 7.7 30 252-282 104-134 (378)
480 PRK06436 glycerate dehydrogena 30.3 3.9E+02 0.0085 26.0 9.5 102 156-284 122-225 (303)
481 PRK07041 short chain dehydroge 30.2 1.8E+02 0.004 26.0 6.9 64 159-223 1-65 (230)
482 cd08192 Fe-ADH7 Iron-containin 30.2 2.7E+02 0.0058 27.8 8.6 88 182-276 3-95 (370)
483 PRK08849 2-octaprenyl-3-methyl 30.2 67 0.0014 32.0 4.3 29 158-186 5-33 (384)
484 PF00890 FAD_binding_2: FAD bi 30.1 67 0.0014 32.3 4.3 31 159-189 2-32 (417)
485 PRK08159 enoyl-(acyl carrier p 30.1 2.8E+02 0.0061 26.0 8.4 69 156-225 11-82 (272)
486 PRK06914 short chain dehydroge 30.0 4.3E+02 0.0093 24.5 9.7 33 156-188 4-36 (280)
487 PRK02102 ornithine carbamoyltr 29.9 4E+02 0.0086 26.4 9.5 60 148-209 149-216 (331)
488 cd08265 Zn_ADH3 Alcohol dehydr 29.9 4.3E+02 0.0092 26.2 10.1 54 150-206 199-252 (384)
489 PRK12831 putative oxidoreducta 29.8 1.4E+02 0.003 30.9 6.7 30 157-186 141-170 (464)
490 PLN02178 cinnamyl-alcohol dehy 29.7 1.4E+02 0.003 29.8 6.5 51 154-207 178-228 (375)
491 PLN02514 cinnamyl-alcohol dehy 29.6 3E+02 0.0066 27.0 8.9 54 150-206 176-229 (357)
492 cd08290 ETR 2-enoyl thioester 29.6 3E+02 0.0064 26.4 8.7 58 150-207 142-200 (341)
493 cd05211 NAD_bind_Glu_Leu_Phe_V 29.5 2.5E+02 0.0055 25.9 7.7 51 137-187 4-54 (217)
494 cd00640 Trp-synth-beta_II Tryp 29.4 4.5E+02 0.0098 24.1 10.8 68 263-340 50-119 (244)
495 CHL00194 ycf39 Ycf39; Provisio 29.4 2.6E+02 0.0056 26.9 8.2 32 157-188 2-33 (317)
496 cd05289 MDR_like_2 alcohol deh 29.3 4.2E+02 0.0091 24.4 9.5 50 150-203 140-189 (309)
497 PRK07538 hypothetical protein; 29.2 69 0.0015 32.3 4.2 28 159-186 3-30 (413)
498 COG0137 ArgG Argininosuccinate 29.1 4.2E+02 0.0091 27.0 9.4 132 156-293 5-145 (403)
499 PF00670 AdoHcyase_NAD: S-aden 29.1 2.4E+02 0.0051 25.0 7.0 47 157-206 24-70 (162)
500 COG0299 PurN Folate-dependent 29.0 99 0.0022 28.3 4.7 37 264-300 3-39 (200)
No 1
>PLN02565 cysteine synthase
Probab=100.00 E-value=2.4e-63 Score=487.02 Aligned_cols=303 Identities=67% Similarity=1.109 Sum_probs=276.3
Q ss_pred HHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHH
Q 015783 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (400)
Q Consensus 95 ~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (400)
.+.++..+++|||++++.++...|.+||+|+|++|||||||||+|.+++..+.+.|.+.+|.+.|+++|+||||.|+|++
T Consensus 6 ~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~ 85 (322)
T PLN02565 6 AKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFM 85 (322)
T ss_pred hhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHH
Confidence 34688899999999999887666789999999999999999999999999999999887876789999999999999999
Q ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHH
Q 015783 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (400)
Q Consensus 175 a~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei 254 (400)
|+.+|++|+||||+++++.|+.+|+.|||+|+.++...+++++++.|.+++++.++.++++||+|+.|+..||+|+|+||
T Consensus 86 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 86 AAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765567889999998887667899999999998878999999999
Q ss_pred HhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC----------CCCchhhhhhccCeEEE
Q 015783 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----------GYVPSILDVQLLDEVIK 324 (400)
Q Consensus 255 ~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~----------~~~~~~l~~~~~~~~~~ 324 (400)
++|++++||+||+|+|+||+++|++.+||++++++|||+|||++|+++..+.+ +..++.+..+.+|+++.
T Consensus 166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~ 245 (322)
T PLN02565 166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQ 245 (322)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEE
Confidence 99997689999999999999999999999999999999999999988765433 12344455677899999
Q ss_pred eCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHHHHhccc
Q 015783 325 VTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIYEEVQNM 397 (400)
Q Consensus 325 V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~~~~~~~ 397 (400)
|+|+|+++++++|++++|+++||+||++++++++++++...++++||+|+||+|.||+++++|+.+..+.++|
T Consensus 246 V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~ 318 (322)
T PLN02565 246 VSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENM 318 (322)
T ss_pred ECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHHHHhcC
Confidence 9999999999999999999999999999999999997765568899999999999999999999999998887
No 2
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=3.8e-63 Score=492.71 Aligned_cols=306 Identities=58% Similarity=0.989 Sum_probs=280.9
Q ss_pred hHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Q 015783 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (400)
Q Consensus 94 ~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (400)
...++.+.+++|||++++++.+.+|++||+|+|++|||||||||++.+++.++.++|.+.||+++|+++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 34678999999999999999988889999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 174 aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
+|+.+|++|+||||+.++..|+.+|+.|||+|+.++...++.+.++++.+++++++++++++||+|+.++..||.++|+|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865445578889999888877889999999999976799999999
Q ss_pred HHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC----------CCCchhhhhhccCeEE
Q 015783 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----------GYVPSILDVQLLDEVI 323 (400)
Q Consensus 254 i~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~----------~~~~~~l~~~~~~~~~ 323 (400)
|++|+++.+|+||+|+|+||+++|+++++|+.++++|||+|||.+++.+.++.+ +..|..++.+.+|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 999986689999999999999999999999999999999999999987765432 2235556677889999
Q ss_pred EeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHHHHhccccc
Q 015783 324 KVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIYEEVQNMQQ 399 (400)
Q Consensus 324 ~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~~~~~~~~~ 399 (400)
.|+|+|+++++++|++++|++++|+||++++++++++++...++++||+|+||+|.||+|.++|++|+.+.+.|+-
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~ 364 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQP 364 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999998775456889999999999999999999999999999964
No 3
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-62 Score=465.66 Aligned_cols=285 Identities=52% Similarity=0.854 Sum_probs=267.4
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (400)
.+.+.+|+|||++++++....+++||+|+|+.||+||.|||.|.+++.+|.++|.+.|| .+||++|+||+|.+||+.|+
T Consensus 4 ~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~vaa 82 (300)
T COG0031 4 SILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMVAA 82 (300)
T ss_pred chHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHHHH
Confidence 56778899999999999998889999999999999999999999999999999999997 48999999999999999999
Q ss_pred HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCC-hhhHHHHHHHHHHhCCC-ceeeCCCCChHHHHHHHHhHHHHH
Q 015783 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG-LRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEI 254 (400)
Q Consensus 177 ~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~-~~~a~~~a~~~a~~~~~-~~~~~~~~~~~~~~~g~~ti~~Ei 254 (400)
.+|+++++|||+.++.+|+++|++|||+|+.++...+ +.++++++.+++++.++ +++.+||+||.||..||.|+|.||
T Consensus 83 ~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI 162 (300)
T COG0031 83 AKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEI 162 (300)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHH
Confidence 9999999999999999999999999999999998544 78999999999999888 677889999999999999999999
Q ss_pred HhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCC---------CCCCCchhhhhhccCeEEEe
Q 015783 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE---------NAGYVPSILDVQLLDEVIKV 325 (400)
Q Consensus 255 ~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g---------~~~~~~~~l~~~~~~~~~~V 325 (400)
++|+++++|+||+++|+||+++|+++++|+.++++++|+|||++++.+.+| ..+++|..++.+.+|+++.|
T Consensus 163 ~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V 242 (300)
T COG0031 163 WQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRV 242 (300)
T ss_pred HHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEE
Confidence 999988899999999999999999999999999999999999999888644 12567777888889999999
Q ss_pred CHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh
Q 015783 326 TNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP 383 (400)
Q Consensus 326 ~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~ 383 (400)
+|+|+++++++|+++||++++++||++++++++++++. .++++||+|+||+|+||++
T Consensus 243 ~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~a~~~-~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 243 SDEEAIATARRLAREEGLLVGISSGAALAAALKLAKEL-PAGKTIVTILPDSGERYLS 299 (300)
T ss_pred CHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHHHHhc-CCCCeEEEEECCCcccccC
Confidence 99999999999999999999999999999999999885 4689999999999999997
No 4
>PLN03013 cysteine synthase
Probab=100.00 E-value=4.2e-61 Score=481.00 Aligned_cols=293 Identities=65% Similarity=1.085 Sum_probs=267.8
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
....++...+|+|||++++.+.+..|++||+|+|++|||||||||+|.+++..++++|.+.+|.++||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 35678999999999999999998888899999999999999999999999999999999888877899999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||+++++.|+++|+.+||+|+.+++..+++++++.|.+++++.++++|++||+|+.++..||+|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655678899999998887688999999999998779999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC----------CCCchhhhhhccCeE
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----------GYVPSILDVQLLDEV 322 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~----------~~~~~~l~~~~~~~~ 322 (400)
||++|++++||+||+|+|+||+++|+++++|+.+|+++||+|||++++.+.++.+ +.+|+.++.+.+|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 9999997789999999999999999999999999999999999999988754332 345777778889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeE-EEEeCCCCCCChhHH
Q 015783 323 IKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLI-AAIFPSFGERYIPTV 385 (400)
Q Consensus 323 ~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~v-Vvl~t~~G~k~~~~~ 385 (400)
+.|+|+|+++++++|++++|+++||+||++++++++++++....++.| |++++++|.+|.++.
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~~ 415 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPRC 415 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhhh
Confidence 999999999999999999999999999999999999987654456665 677789999999974
No 5
>PLN00011 cysteine synthase
Probab=100.00 E-value=2.9e-60 Score=466.27 Aligned_cols=303 Identities=61% Similarity=0.984 Sum_probs=272.0
Q ss_pred HHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHH
Q 015783 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (400)
Q Consensus 95 ~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (400)
.+.+...+++|||++++++.+..|.+||+|+|++|||||||+|++.+++..++++|.+.|+.++|+++|+||||+|+|++
T Consensus 8 ~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~ 87 (323)
T PLN00011 8 KNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACI 87 (323)
T ss_pred HhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHH
Confidence 34577789999999999988777789999999999999999999999999999999998887889999999999999999
Q ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHH
Q 015783 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (400)
Q Consensus 175 a~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei 254 (400)
|+.+|++|+||||.++++.|+++|+.+||+|+.++.+...++.++++.+++++.+++++++||+|+.++..||.++|+||
T Consensus 88 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI 167 (323)
T PLN00011 88 GAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEI 167 (323)
T ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765455678888888887667889999999988766999999999
Q ss_pred HhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC----------CCCchhhhhhccCeEEE
Q 015783 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----------GYVPSILDVQLLDEVIK 324 (400)
Q Consensus 255 ~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~----------~~~~~~l~~~~~~~~~~ 324 (400)
++|+.++||+||+|+|+||+++|++.++|++++++|||+|||.+++++..+.+ +..+..+....+|+++.
T Consensus 168 ~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~ 247 (323)
T PLN00011 168 WRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQ 247 (323)
T ss_pred HHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEE
Confidence 99996689999999999999999999999999999999999999988765433 12344455667899999
Q ss_pred eCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHHHHhccc
Q 015783 325 VTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIYEEVQNM 397 (400)
Q Consensus 325 V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~~~~~~~ 397 (400)
|+|+|+++++++|++++||+++|+||++++++++++++...++++||+|++++|.||+|+.+|+.|..+...+
T Consensus 248 V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~ 320 (323)
T PLN00011 248 VTGEEAIETAKLLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENL 320 (323)
T ss_pred ECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcC
Confidence 9999999999999999999999999999999999887654567899999999999999999999998875543
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=8.7e-60 Score=458.65 Aligned_cols=286 Identities=58% Similarity=0.932 Sum_probs=259.4
Q ss_pred cccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcC
Q 015783 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179 (400)
Q Consensus 100 ~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~G 179 (400)
..+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..++++|.+.++ ++|+++|+||||+|+|++|+.+|
T Consensus 3 ~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~G 81 (299)
T TIGR01136 3 ELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAKG 81 (299)
T ss_pred cccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcC
Confidence 46789999999999998889999999999999999999999999999999976554 57999999999999999999999
Q ss_pred CeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhC
Q 015783 180 YKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTL 259 (400)
Q Consensus 180 l~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~ 259 (400)
++|+||||+++++.|+.+|+.+||+|+.++++.+++++++++.+++++.++++++++|+|+.++..||+++++||++|++
T Consensus 82 ~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~ 161 (299)
T TIGR01136 82 YKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTD 161 (299)
T ss_pred CcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999876556889999999888765678999999999877899999999999997
Q ss_pred CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC----------CCCchhhhhhccCeEEEeCHHH
Q 015783 260 GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----------GYVPSILDVQLLDEVIKVTNDE 329 (400)
Q Consensus 260 ~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~----------~~~~~~l~~~~~~~~~~V~d~e 329 (400)
+.||+||+|+|+||+++|++.+|++.++.+|||+|||.+++++....+ +..++.+..+.+|+.+.|+|+|
T Consensus 162 ~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e 241 (299)
T TIGR01136 162 GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDED 241 (299)
T ss_pred CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHH
Confidence 689999999999999999999999999999999999999988764322 2355666677889999999999
Q ss_pred HHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 330 AVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 330 ~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
+++++++|++.+|+++||+||++++++++++++...++++||+|+||+|.||.|+.+
T Consensus 242 ~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~~ 298 (299)
T TIGR01136 242 AIETARRLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTGL 298 (299)
T ss_pred HHHHHHHHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCccc
Confidence 999999999999999999999999999998876445689999999999999999744
No 7
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=7.7e-60 Score=457.80 Aligned_cols=289 Identities=43% Similarity=0.718 Sum_probs=259.0
Q ss_pred HHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHH
Q 015783 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (400)
Q Consensus 96 ~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (400)
+.+...+++|||+++++|.+..|.+||+|+|++|||||||+|++.+++..++++|.+.++ ++|+++|+||||.|+|++|
T Consensus 4 ~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a 82 (296)
T PRK11761 4 PTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALAMIA 82 (296)
T ss_pred ccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHH
Confidence 467778999999999999988889999999999999999999999999999999977664 5799999999999999999
Q ss_pred HHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHH
Q 015783 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (400)
Q Consensus 176 ~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~ 255 (400)
+.+|++|+||||+++++.|+++|+.+||+|+.++...+++++.+.+.+++++. +++|++||+|+.++..||+|+|+||+
T Consensus 83 ~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~ 161 (296)
T PRK11761 83 AIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIW 161 (296)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHH
Confidence 99999999999999999999999999999999997445778888888887774 78899999999998778999999999
Q ss_pred hhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCC--C-CCCchhhhhhccCeEEEeCHHHHHH
Q 015783 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN--A-GYVPSILDVQLLDEVIKVTNDEAVN 332 (400)
Q Consensus 256 ~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~--~-~~~~~~l~~~~~~~~~~V~d~e~~~ 332 (400)
+|+++.+|+||+|+|+||+++|++.+||+.++++|||+|||++++.+.+-. + ...+..++...+|+++.|+|+|+++
T Consensus 162 eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~ 241 (296)
T PRK11761 162 RQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAEN 241 (296)
T ss_pred HhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHHHH
Confidence 999767999999999999999999999999999999999999988775311 1 1233444567789999999999999
Q ss_pred HHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhH
Q 015783 333 MARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFR 388 (400)
Q Consensus 333 a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~ 388 (400)
++++|++.+|+++||+||++++++++++++ .++++||+|+||+|+||+++.+|+
T Consensus 242 a~~~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 242 TMRRLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred HHHHHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEEEEECCCCcccCChhccc
Confidence 999999999999999999999999998775 367899999999999999986654
No 8
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=7.9e-59 Score=449.63 Aligned_cols=285 Identities=43% Similarity=0.713 Sum_probs=255.1
Q ss_pred hhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHH
Q 015783 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177 (400)
Q Consensus 98 v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~ 177 (400)
+...+++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+.|.+.++ ++|+++|+||||.|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 4557899999999999988889999999999999999999999999999999987664 579999999999999999999
Q ss_pred cCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhh
Q 015783 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWED 257 (400)
Q Consensus 178 ~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Q 257 (400)
+|++|+||||+++++.|+++|+.+||+|+.++.+.+++++.+.+.+++++. +.+|++||+|+.++..||.|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999987545778888888888876 4468899999999866899999999999
Q ss_pred hCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCC---CCCCchhhhhhccCeEEEeCHHHHHHHH
Q 015783 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNMA 334 (400)
Q Consensus 258 l~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~---~~~~~~~l~~~~~~~~~~V~d~e~~~a~ 334 (400)
+++++|+||+|+|+||+++|++.+||++++++|||+|||.+++.+.+.. .+..+..+....+|+++.|+|+|+++++
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~ 239 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTM 239 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHH
Confidence 9778999999999999999999999999999999999999987765422 1223444556678999999999999999
Q ss_pred HHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 335 RRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 335 ~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
++|++.+|+++||+||++++++++++++ .++++||+|+||+|+||+++.+
T Consensus 240 ~~l~~~~gi~~g~ssga~laa~~~~~~~--~~~~~vv~v~~d~g~ky~~~~~ 289 (290)
T TIGR01138 240 RELAVREGIFCGVSSGGAVAAALRLARE--LPDAVVVAIICDRGDRYLSTGV 289 (290)
T ss_pred HHHHHHhCceEcHhHHHHHHHHHHHHHH--CCCCeEEEEECCCCccccCccc
Confidence 9999999999999999999999998775 3678999999999999999744
No 9
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=1.2e-58 Score=456.48 Aligned_cols=299 Identities=41% Similarity=0.643 Sum_probs=258.1
Q ss_pred HHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHH
Q 015783 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (400)
Q Consensus 95 ~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (400)
.+.++..+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.+++++|.+.++ .+|+++|+||||+|+|++
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~ 82 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLALV 82 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999999999999999976654 579999999999999999
Q ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCC-C-----hhhHHHHHHHHHHhC-CCceeeCCCCChHHHHHHH
Q 015783 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK-G-----LRGALDKAEEIVLNT-PNAYMFQQFDNMANLKIHF 247 (400)
Q Consensus 175 a~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~-~-----~~~a~~~a~~~a~~~-~~~~~~~~~~~~~~~~~g~ 247 (400)
|+++|++|+||||..+++.|+.+|+.+||+|+.++++. . .+.+.+.+.++.++. .+++|++||+|+.++..||
T Consensus 83 a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (330)
T PRK10717 83 AAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHY 162 (330)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHH
Confidence 99999999999999999999999999999999998641 1 112233344443332 3788999999999877899
Q ss_pred HhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC---CC----C---------CCCc
Q 015783 248 DSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---EN----A---------GYVP 311 (400)
Q Consensus 248 ~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~---g~----~---------~~~~ 311 (400)
.|+++||++|++++||+||+|+|+||+++|++.+|++++++++||+|||++++.+.. +. . +..+
T Consensus 163 ~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~ 242 (330)
T PRK10717 163 ETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRIT 242 (330)
T ss_pred HhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCC
Confidence 999999999997689999999999999999999999999999999999999854321 11 0 1223
Q ss_pred hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHH
Q 015783 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIY 391 (400)
Q Consensus 312 ~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~ 391 (400)
+.+....+|+++.|+|+|+++++++|++++||++||+||++++++++++++. .++++||+|+||+|.||++.++.|+|.
T Consensus 243 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~~~~d~~~ 321 (330)
T PRK10717 243 ANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGERYQSKLFNPDFL 321 (330)
T ss_pred cccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCchhhcccccCHHHH
Confidence 4445556889999999999999999999999999999999999999988763 467899999999999999999999999
Q ss_pred HHhc
Q 015783 392 EEVQ 395 (400)
Q Consensus 392 ~~~~ 395 (400)
.+..
T Consensus 322 ~~~~ 325 (330)
T PRK10717 322 REKG 325 (330)
T ss_pred HhcC
Confidence 8753
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=1.3e-58 Score=450.30 Aligned_cols=285 Identities=57% Similarity=0.921 Sum_probs=254.0
Q ss_pred hcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHc
Q 015783 99 TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (400)
Q Consensus 99 ~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~ 178 (400)
..++++|||+++++ ...+|.+||+|+|++|||||||+|++.+++.+++++|.+.+| ++|+++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 556788999999999999999999999999999999976553 5799999999999999999999
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCC-ceeeCCCCChHHHHHHHHhHHHHHHhh
Q 015783 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWED 257 (400)
Q Consensus 179 Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~-~~~~~~~~~~~~~~~g~~ti~~Ei~~Q 257 (400)
|++|+||||+++++.|+++|+.+||+|+.++++.+..++++.+.+++++.++ ++++++|+|+.++..||+|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875456788889988887654 458999999998778999999999999
Q ss_pred hCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC----------CCCchhhhhhccCeEEEeCH
Q 015783 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----------GYVPSILDVQLLDEVIKVTN 327 (400)
Q Consensus 258 l~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~----------~~~~~~l~~~~~~~~~~V~d 327 (400)
+++.||+||+|+|+||+++|++.+|+++++++|||+|||.+++++....+ +.++..+..+.+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999999987764222 12455556677899999999
Q ss_pred HHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 328 DEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 328 ~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
+|+++++++|++.+||+++|+||++++++++++++. .++++||+++||+|.||+|+..
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssga~laa~~~~~~~~-~~~~~vv~v~~d~G~ky~~~~~ 297 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSGAAVAAALKLAKRP-EPDKLIVVILPSTGERYLSTPL 297 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccccCccc
Confidence 999999999999999999999999999999988763 3678999999999999998643
No 11
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-60 Score=446.32 Aligned_cols=307 Identities=60% Similarity=0.978 Sum_probs=289.5
Q ss_pred CcchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHH
Q 015783 91 GVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLG 170 (400)
Q Consensus 91 ~~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~A 170 (400)
.....+++.+.+|+|||+.++++.+.+.++||+|+|.+||+||.|||.++.++.+|..+|.+.||+.+|+++|+||+|.+
T Consensus 39 ~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 39 RILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred hhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 34566789999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhh---HHHHHHHHHHhCCCceeeCCCCChHHHHHHH
Q 015783 171 IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG---ALDKAEEIVLNTPNAYMFQQFDNMANLKIHF 247 (400)
Q Consensus 171 lA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~---a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~ 247 (400)
+|++|+..|++|+++||+.++.+|+.+|+++||+|++++....+++ ++..+.++..+.++.+.++||.||.|+..||
T Consensus 119 LA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy 198 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHY 198 (362)
T ss_pred HHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccc
Confidence 9999999999999999999999999999999999999998776777 9999999999999999999999999998899
Q ss_pred HhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC------------CCCchhhh
Q 015783 248 DSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA------------GYVPSILD 315 (400)
Q Consensus 248 ~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~------------~~~~~~l~ 315 (400)
.++|.||++|+.+++|.||.++|+|||++|+++++|+.+++++|++|||..+..+.++.+ +++|..++
T Consensus 199 ~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld 278 (362)
T KOG1252|consen 199 ETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLD 278 (362)
T ss_pred ccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccc
Confidence 999999999998899999999999999999999999999999999999999987765433 46788899
Q ss_pred hhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHHHHhc
Q 015783 316 VQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIYEEVQ 395 (400)
Q Consensus 316 ~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~~~~~ 395 (400)
...+|+.+.+.++|++.++++|+.+||++++++||+++++|++++++.+..++-+|++++++|.+|+++.++|+|+++..
T Consensus 279 ~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~ 358 (362)
T KOG1252|consen 279 TKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAE 358 (362)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999877778888877999999999999999999987
Q ss_pred cc
Q 015783 396 NM 397 (400)
Q Consensus 396 ~~ 397 (400)
+|
T Consensus 359 ~~ 360 (362)
T KOG1252|consen 359 KL 360 (362)
T ss_pred hh
Confidence 75
No 12
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=8e-58 Score=461.19 Aligned_cols=341 Identities=20% Similarity=0.213 Sum_probs=277.2
Q ss_pred ccccccccccccc------ccccCCCccCCCCCcccccccchHHHHHhhc---cCCCcchHHHhhcccCCCCceeccccc
Q 015783 44 NGALATRRRILPI------VASAKAGAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLIGRTPMVYLNKVT 114 (400)
Q Consensus 44 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~lp~~~~~~~v~~~~~~TPL~~~~~l~ 114 (400)
...|+.+|+++.. +++-+|.+.++..+.++.+.++..+++|+.+ |+|+++....++..+++|||+++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~TPL~~~~~L~ 87 (427)
T PRK12391 8 EDEIPTQWYNILADLPEPLPPPLDPGTGEPVTPEDLAPIFPMELIEQEVSTERYIDIPEEVREIYRLWRPTPLIRARRLE 87 (427)
T ss_pred hhhccccceecCCCCCCCCCCCCCCCCCCCCCHHHhhhcChHHHhhccCCcccccCChHHHHHHHcccCCCCeeEchhhH
Confidence 3557888888743 3455666777777888999999999999876 799999888889999999999999999
Q ss_pred ccCC--CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---
Q 015783 115 EGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS--- 189 (400)
Q Consensus 115 ~~lg--~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~--- 189 (400)
+.+| ++||+|+|++|||||||+|++..++.+++++|. ...++++|+||||+|+|++|+.+|++|+||||+.
T Consensus 88 ~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~~ 163 (427)
T PRK12391 88 KALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSYE 163 (427)
T ss_pred hhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCcc
Confidence 9887 699999999999999999999999999999995 3444457899999999999999999999999974
Q ss_pred CcHHHHHHHHHcCCEEEEeCCCCC----------------hhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 190 TNLERRILLRAFGAEIILTDPEKG----------------LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 190 ~~~~~~~~l~~~GA~V~~~~~~~~----------------~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
.++.|+.+|+.|||+|+.++++.+ ...++++|.+.+.+.++.+|+.++++++. ..||.++|+|
T Consensus 164 ~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~~~-~~~~~~ig~E 242 (427)
T PRK12391 164 QKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLNHV-LLHQTVIGLE 242 (427)
T ss_pred cCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCcHH-HhhHHHHHHH
Confidence 477899999999999999986522 11267888888877666667666554443 5799999999
Q ss_pred HHhhhC---CCCCEEEEecCCChhHHhHHHHHH-h--cC-CCcEEEEEeCCCCccccCCCC-------------------
Q 015783 254 IWEDTL---GCVDIFVAAIGTGGTITGTGRFLK-M--MN-KEIKVVGVEPAERSVISGENA------------------- 307 (400)
Q Consensus 254 i~~Ql~---~~pD~vv~pvG~Gg~~aGi~~~~k-~--~~-~~~rvi~Vep~~~~~l~~g~~------------------- 307 (400)
|.+|++ ..||+||+|+|+|||++|++.+|. . .+ +++|||+|||++|++++++..
T Consensus 243 i~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~l 322 (427)
T PRK12391 243 AKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTL 322 (427)
T ss_pred HHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEec
Confidence 999995 369999999999999999998663 2 34 789999999999998876421
Q ss_pred --CCCchh-----------------hhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCC--
Q 015783 308 --GYVPSI-----------------LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENS-- 366 (400)
Q Consensus 308 --~~~~~~-----------------l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~-- 366 (400)
++++.. +.+..+++++.|+|+|+++++++|++.|||+++|+||+++++++++++++...
T Consensus 323 G~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~ 402 (427)
T PRK12391 323 GHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGE 402 (427)
T ss_pred CCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCC
Confidence 011111 12334558899999999999999999999999999999999999998765333
Q ss_pred CCeEEEEeCCCCCCChhHHhhHHHH
Q 015783 367 GKLIAAIFPSFGERYIPTVLFRSIY 391 (400)
Q Consensus 367 ~~~vVvl~t~~G~k~~~~~~~~~~~ 391 (400)
++.||+++| |++|+|...|++|+
T Consensus 403 ~~~iv~~ls--G~G~~d~~~y~~~l 425 (427)
T PRK12391 403 EKVILFNLS--GHGLLDLAAYDAYL 425 (427)
T ss_pred CCEEEEEeC--CCCCCCHHHHHHHh
Confidence 456666665 55566777888875
No 13
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=2.7e-57 Score=453.49 Aligned_cols=298 Identities=32% Similarity=0.510 Sum_probs=255.4
Q ss_pred HHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHH
Q 015783 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (400)
Q Consensus 96 ~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (400)
..+...+++|||+++++|....|.+||+|+|++|||||||||+|.+++..+.+.|.+.++ .+|+++|+||||.|+|++|
T Consensus 45 ~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~alA~~a 123 (423)
T PLN02356 45 NGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLATVA 123 (423)
T ss_pred hhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHHHHHHH
Confidence 356677899999999999998899999999999999999999999999999998876554 4688899999999999999
Q ss_pred HHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC-----CCh-hhHH---HHHHHHHHh-------------------
Q 015783 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE-----KGL-RGAL---DKAEEIVLN------------------- 227 (400)
Q Consensus 176 ~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~-----~~~-~~a~---~~a~~~a~~------------------- 227 (400)
+.+|++|+||||+++++.|+++|+.|||+|+.+++. ..+ ..+. +++.+++++
T Consensus 124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~ 203 (423)
T PLN02356 124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI 203 (423)
T ss_pred HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 999999999999999999999999999999999641 111 1111 234444433
Q ss_pred -------------CCCceeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEE
Q 015783 228 -------------TPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294 (400)
Q Consensus 228 -------------~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~V 294 (400)
.++.+|++||+|+.++..|+..+|+||++|++++||+||+|+|+||+++|++++||+.+|++|||+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV 283 (423)
T PLN02356 204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI 283 (423)
T ss_pred ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1467899999999997776666699999999778999999999999999999999999999999999
Q ss_pred eCCCCcccc-------------CCC--------------CCCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeeh
Q 015783 295 EPAERSVIS-------------GEN--------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGI 347 (400)
Q Consensus 295 ep~~~~~l~-------------~g~--------------~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p 347 (400)
||.+++.+. .|. .+..+..+....+|+++.|+|+|+++++++|++++|+++||
T Consensus 284 ep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~ 363 (423)
T PLN02356 284 DPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGS 363 (423)
T ss_pred ecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeE
Confidence 999876331 111 12345666778899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHHHHhc
Q 015783 348 SSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIYEEVQ 395 (400)
Q Consensus 348 ~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~~~~~ 395 (400)
+||++++++++++++. .++++||+|+||+|.||++.++.++|+.+..
T Consensus 364 Ssaa~laaa~~la~~~-~~g~~VV~Il~d~G~kyl~~~~~~~w~~~~~ 410 (423)
T PLN02356 364 SSAMNCVGAVRVAQSL-GPGHTIVTILCDSGMRHLSKFHDPQYLSQHG 410 (423)
T ss_pred CHHHHHHHHHHHHHHh-CCCCeEEEEECCCCcchhhhhcCHHHHHhcC
Confidence 9999999999988652 3688999999999999999999999998753
No 14
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=5.3e-58 Score=454.70 Aligned_cols=296 Identities=22% Similarity=0.259 Sum_probs=257.6
Q ss_pred HHHHHhhccCCCcchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEE
Q 015783 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (400)
Q Consensus 80 ~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (400)
.+|| |++++|.......+++++|+|||+++++|++.+|.+||+|+|++|||||||||++.+++.+++++| .++|
T Consensus 5 ~~~r-y~~~lp~~~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g-----~~~v 78 (351)
T PRK06352 5 LLEK-YKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEG-----AEAV 78 (351)
T ss_pred hHHH-HHHhCCCCCCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCC-----CCEE
Confidence 4677 999999977666799999999999999999988899999999999999999999999999999998 4689
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCC
Q 015783 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (400)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (400)
+++|+||||+|+|++|+.+|++|+||||++ .++.|+.+|+.+||+|+.++++ ++++++.+.+++++. ++++.+ +.
T Consensus 79 V~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~ 154 (351)
T PRK06352 79 ICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--FDEALKSVRELAETE-AVTLVN-SV 154 (351)
T ss_pred EEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cccccc-CC
Confidence 999999999999999999999999999997 5899999999999999999865 778888998888774 555555 55
Q ss_pred ChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCC-----cEEEEEeCCCCccccCCCCC-----
Q 015783 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-----IKVVGVEPAERSVISGENAG----- 308 (400)
Q Consensus 239 ~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~-----~rvi~Vep~~~~~l~~g~~~----- 308 (400)
|+.++ +||.|+++||++|++..||+||+|+|+||+++|++++|++++++ +|||+|||++|+++..+.+.
T Consensus 155 n~~~~-~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ 233 (351)
T PRK06352 155 NPYRL-EGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPET 233 (351)
T ss_pred Cccce-eeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCc
Confidence 88885 79999999999999768999999999999999999999998766 89999999999876544321
Q ss_pred ---------CCchhhhhhccC----eEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC-CCCCeEEEEe
Q 015783 309 ---------YVPSILDVQLLD----EVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE-NSGKLIAAIF 374 (400)
Q Consensus 309 ---------~~~~~l~~~~~~----~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-~~~~~vVvl~ 374 (400)
...+.+..+.+| .++.|+|+|+++++++|++++||+++|+||+++++++++++++. .++++||+++
T Consensus 234 ia~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~ 313 (351)
T PRK06352 234 IATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVF 313 (351)
T ss_pred ceeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEe
Confidence 111222223333 48999999999999999999999999999999999999887543 4678999999
Q ss_pred CCCCCCChhHHh
Q 015783 375 PSFGERYIPTVL 386 (400)
Q Consensus 375 t~~G~k~~~~~~ 386 (400)
||+|.||++.+.
T Consensus 314 tg~G~~~~~~~~ 325 (351)
T PRK06352 314 TGNGLKDPDTAM 325 (351)
T ss_pred CCCCcCChHHHH
Confidence 999999998763
No 15
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=5.2e-58 Score=464.53 Aligned_cols=299 Identities=19% Similarity=0.170 Sum_probs=263.6
Q ss_pred cchHHHHHhhccCCCcchHHHhhcccCCCCceecccccccCC-CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCC
Q 015783 77 STREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155 (400)
Q Consensus 77 ~~~~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg-~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g 155 (400)
...++|| |+++||..+.. .+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..|++.|
T Consensus 64 ~~~~~wr-y~~~lp~~~~~-~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g----- 136 (421)
T PRK07591 64 GPKSIWR-YRDLLPVPADN-PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELG----- 136 (421)
T ss_pred cccchhc-chhhCccccCC-CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcC-----
Confidence 3468998 99999986533 6999999999999999999998 59999999999999999999999999999998
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
.++|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.++++ ++++.+.+.+++++.+++++++
T Consensus 137 ~~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n 214 (421)
T PRK07591 137 FTTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVN 214 (421)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEec
Confidence 46889999999999999999999999999999999999999999999999999975 7888899998888765788888
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhCCC-CCEEEEecCCChhHHhHHHHHHhc-------CCCcEEEEEeCCCCccccC---
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVISG--- 304 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~~~-pD~vv~pvG~Gg~~aGi~~~~k~~-------~~~~rvi~Vep~~~~~l~~--- 304 (400)
++.||+.+ +||+|+++||++|++++ ||+||+|+|+||+++|++++|+++ ++.+|||+|||++|+++..
T Consensus 215 ~~~~p~~i-eG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~ 293 (421)
T PRK07591 215 INLRPYYA-EGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFK 293 (421)
T ss_pred CCCCcccc-cchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHH
Confidence 88888884 79999999999999765 999999999999999999999997 5789999999999877652
Q ss_pred -CC-------CCC--------C------chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcC
Q 015783 305 -EN-------AGY--------V------PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARR 362 (400)
Q Consensus 305 -g~-------~~~--------~------~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~ 362 (400)
+. +.. . .+.+.++..+.++.|+|+|++++++.|++.+||+++|+||+++|+++++.++
T Consensus 294 ~g~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~ 373 (421)
T PRK07591 294 EGRDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEA 373 (421)
T ss_pred cCCCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHh
Confidence 21 100 0 1123345667899999999999999999999999999999999999999887
Q ss_pred CC-CCCCeEEEEeCCCCCCChhHH
Q 015783 363 PE-NSGKLIAAIFPSFGERYIPTV 385 (400)
Q Consensus 363 ~~-~~~~~vVvl~t~~G~k~~~~~ 385 (400)
+. .++++||+++||+|.||++.+
T Consensus 374 g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 374 GKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred CCCCCCCeEEEEeCCCccCCHHHH
Confidence 64 478899999999999998754
No 16
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=1.1e-57 Score=459.46 Aligned_cols=298 Identities=23% Similarity=0.200 Sum_probs=262.5
Q ss_pred chHHHHHhhccCCCcchHHHhhcccCCCCceecccccccCC-CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCC
Q 015783 78 TREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156 (400)
Q Consensus 78 ~~~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg-~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~ 156 (400)
..++|| |+++||.......+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+++.| .
T Consensus 54 ~~~~~r-y~~~lp~~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g-----~ 127 (394)
T PRK08197 54 PANLWR-YHELLPVRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELG-----V 127 (394)
T ss_pred Ccchhc-chhhCCCCCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcC-----C
Confidence 467998 9999998765556999999999999999999888 69999999999999999999999999999998 4
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (400)
++|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++.+.+.+.+++. +++++++
T Consensus 128 ~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~ 204 (394)
T PRK08197 128 KHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVST 204 (394)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccC
Confidence 7899999999999999999999999999999999999999999999999999875 678888888888775 7889999
Q ss_pred CCChHHHHHHHHhHHHHHHhhhCCC-CCEEEEecCCChhHHhHHHHHHhc-------CCCcEEEEEeCCCCccccC----
Q 015783 237 FDNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVISG---- 304 (400)
Q Consensus 237 ~~~~~~~~~g~~ti~~Ei~~Ql~~~-pD~vv~pvG~Gg~~aGi~~~~k~~-------~~~~rvi~Vep~~~~~l~~---- 304 (400)
+.||.++ +|++|+++||++|++++ ||+||+|+|+|++++|++++|+++ .+.+|||+|||++|+++.+
T Consensus 205 ~~np~~i-eG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~ 283 (394)
T PRK08197 205 LKEPYRI-EGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEE 283 (394)
T ss_pred CCCccch-hcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHc
Confidence 9999985 79999999999999764 999999999999999999999986 3789999999999977642
Q ss_pred CC--------CCC------Cch--------hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcC
Q 015783 305 EN--------AGY------VPS--------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARR 362 (400)
Q Consensus 305 g~--------~~~------~~~--------~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~ 362 (400)
+. +.. ++. ...++..+.++.|+|+|+++++++|++++||+++|+||+++++++++.++
T Consensus 284 g~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~ 363 (394)
T PRK08197 284 GKEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRES 363 (394)
T ss_pred CCCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHc
Confidence 11 000 111 11235567889999999999999999999999999999999999999887
Q ss_pred CC-CCCCeEEEEeCCCCCCChhHH
Q 015783 363 PE-NSGKLIAAIFPSFGERYIPTV 385 (400)
Q Consensus 363 ~~-~~~~~vVvl~t~~G~k~~~~~ 385 (400)
+. .++++||+++||+|.||.+.+
T Consensus 364 ~~~~~~~~Vv~v~tG~g~k~~~~~ 387 (394)
T PRK08197 364 GWLKGDERVVLFNTGSGLKYPDTV 387 (394)
T ss_pred CCcCCCCcEEEEeCCCCcCchhhh
Confidence 54 467899999999999998864
No 17
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=5.8e-57 Score=454.33 Aligned_cols=338 Identities=19% Similarity=0.185 Sum_probs=266.8
Q ss_pred cccccccc------cccccCCCccCCCCCcccccccchHHHHHhhc---cCCCcchHHHhhccc-CCCCceecccccccC
Q 015783 48 ATRRRILP------IVASAKAGAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLI-GRTPMVYLNKVTEGC 117 (400)
Q Consensus 48 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~lp~~~~~~~v~~~~-~~TPL~~~~~l~~~l 117 (400)
+.+|++.. ++++-+|.+.++..+.++.+.++..+.+|+.+ |+++++.....+..+ ++|||+++++|++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~v~~~~~l~g~pTPL~r~~~L~~~l 81 (419)
T TIGR01415 2 PKHWYNILPDLPEPLPPPLDPEGEEPIAIEKLKRIFPEKLLEQEVSGERWIKIPGEVLKRYAQIGRPTPLIRAKGLEELL 81 (419)
T ss_pred CCcceecCCCCCCCCCCCCCCCCCCcCCHHHHhhhCcHHHHhccccHhhHHhhHHHHHHHHHhcCCCCCeEEccchhhhh
Confidence 44666653 23455666666767777899999999998777 678886666666666 589999999999988
Q ss_pred C--CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---CcH
Q 015783 118 V--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNL 192 (400)
Q Consensus 118 g--~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~---~~~ 192 (400)
| ++||+|+|++|||||||+|++.+++.+++++|. .+.++++|+||||+|+|++|+.+|++|+||||+. .++
T Consensus 82 g~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k~ 157 (419)
T TIGR01415 82 GTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQKP 157 (419)
T ss_pred CCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccCH
Confidence 7 699999999999999999999999999999995 4445567899999999999999999999999984 467
Q ss_pred HHHHHHHHcCCEEEEeCCCCChh----------------hHHHHHHHHHHhCCCcee-eCCCCChHHHHHHHHhHHHHHH
Q 015783 193 ERRILLRAFGAEIILTDPEKGLR----------------GALDKAEEIVLNTPNAYM-FQQFDNMANLKIHFDSTGPEIW 255 (400)
Q Consensus 193 ~~~~~l~~~GA~V~~~~~~~~~~----------------~a~~~a~~~a~~~~~~~~-~~~~~~~~~~~~g~~ti~~Ei~ 255 (400)
.|+.+|+.|||+|+.++++.+.. .++++|.+.+.++++..| ..++.| + +..||+++|+||+
T Consensus 158 ~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n-~-~~~h~~~ig~Ei~ 235 (419)
T TIGR01415 158 YRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLN-H-VLLHQTVIGLEAK 235 (419)
T ss_pred HHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCc-H-HHHHHHHHHHHHH
Confidence 89999999999999998753211 147788888776554444 444444 3 3569999999999
Q ss_pred hhhCC---CCCEEEEecCCChhHHhHHHHHHhc---C-CCcEEEEEeCCCCccccCCCC---------------------
Q 015783 256 EDTLG---CVDIFVAAIGTGGTITGTGRFLKMM---N-KEIKVVGVEPAERSVISGENA--------------------- 307 (400)
Q Consensus 256 ~Ql~~---~pD~vv~pvG~Gg~~aGi~~~~k~~---~-~~~rvi~Vep~~~~~l~~g~~--------------------- 307 (400)
+|+++ .||+||+|+|+|||++|++.+|.+. + +++|||+|||++|++++++..
T Consensus 236 ~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG~ 315 (419)
T TIGR01415 236 KQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLGH 315 (419)
T ss_pred HHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecCC
Confidence 99964 5999999999999999999887432 2 479999999999988876431
Q ss_pred CCCch-----------------hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeE
Q 015783 308 GYVPS-----------------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLI 370 (400)
Q Consensus 308 ~~~~~-----------------~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~v 370 (400)
+++|. .+.++.+++++.|+|+|+++++++|+++|||+++|+||++++++++++++....++.+
T Consensus 316 ~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~~a~~~~~~~~~~ 395 (419)
T TIGR01415 316 DFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEK 395 (419)
T ss_pred CCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhcCcCCCCe
Confidence 01111 1223455678999999999999999999999999999999999999988765445554
Q ss_pred EEEeCCCCCCChhHHhhHHHH
Q 015783 371 AAIFPSFGERYIPTVLFRSIY 391 (400)
Q Consensus 371 Vvl~t~~G~k~~~~~~~~~~~ 391 (400)
+++++.+|++|+|...|++++
T Consensus 396 vvv~~lsG~G~~d~~~y~~~~ 416 (419)
T TIGR01415 396 VILFNLSGHGLLDLKAYAKYL 416 (419)
T ss_pred EEEEEcCCCCcCCHHHHHHHh
Confidence 555555566666777787765
No 18
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=1.7e-56 Score=433.90 Aligned_cols=279 Identities=53% Similarity=0.871 Sum_probs=249.4
Q ss_pred CCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeE
Q 015783 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182 (400)
Q Consensus 103 ~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~ 182 (400)
|+|||+++++|++..|.+||+|+|++|||||||+|++.+.+..++++|.+.++ .+|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 58999999999998899999999999999999999999999999999875443 67999999999999999999999999
Q ss_pred EEEeCCCCcHHHHHHHHHcCCEEEEeCCCC--ChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCC
Q 015783 183 IVTMPASTNLERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260 (400)
Q Consensus 183 ~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~ 260 (400)
+||||.++++.|+++|+.+||+|+.++... +.+++++.+.+++++.++++|+++|+||.++..|++|+++||.+|+++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998763 347788888888877657999999999999754456999999999976
Q ss_pred CCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCC----------CCCchhhhhhccCeEEEeCHHHH
Q 015783 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENA----------GYVPSILDVQLLDEVIKVTNDEA 330 (400)
Q Consensus 261 ~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~----------~~~~~~l~~~~~~~~~~V~d~e~ 330 (400)
.||+||+|+|+||+++|++.+|++++++++||+|||.+++++..... +..++.+....+++++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999999988732111 12345566668899999999999
Q ss_pred HHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh
Q 015783 331 VNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP 383 (400)
Q Consensus 331 ~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~ 383 (400)
+++++.|++++||++||++|++++++++++++. .++++||+|+||+|.||+|
T Consensus 240 ~~a~~~l~~~~gi~~epssa~a~a~~~~~~~~~-~~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 240 FAMARRLAREEGLLVGGSSGAAVAAALKLAKRL-GPGKTIVTILPDSGERYLS 291 (291)
T ss_pred HHHHHHHHHHhCeeEcccHHHHHHHHHHHHHhc-CCCCeEEEEECCCccccCC
Confidence 999999999999999999999999999988764 3688999999999999985
No 19
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=9.7e-57 Score=446.03 Aligned_cols=300 Identities=22% Similarity=0.253 Sum_probs=258.5
Q ss_pred HHHHhhccCCCcchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEE
Q 015783 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160 (400)
Q Consensus 81 l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv 160 (400)
++.+|.++||+.+...++++.+|+|||+++++|++.+|.+||+|+|++|||||||||++.+++.+++++| .++|+
T Consensus 5 ~~~ry~~~lp~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g-----~~~vV 79 (352)
T PRK06721 5 LLNQYASYLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEG-----SEAII 79 (352)
T ss_pred hHHHHHHhCCCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCC-----CCEEE
Confidence 3444999999988888899999999999999999988899999999999999999999999999999998 46899
Q ss_pred EeCCChHHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCC
Q 015783 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN 239 (400)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~ 239 (400)
++|+||||+|+|++|+.+|++|+||||++. ++.|+.+|+.+||+|+.++++ ++++.+.+.+++++. ++++.+ +.|
T Consensus 80 ~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n 155 (352)
T PRK06721 80 CASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGN--FDDALKAVRNIAAEE-PITLVN-SVN 155 (352)
T ss_pred EECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhC-Cceecc-CCC
Confidence 999999999999999999999999999974 788999999999999999865 778888888888875 556655 568
Q ss_pred hHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHH----HHHHhcC-CCcEEEEEeCCCCccccCCCC----C--
Q 015783 240 MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTG----RFLKMMN-KEIKVVGVEPAERSVISGENA----G-- 308 (400)
Q Consensus 240 ~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~----~~~k~~~-~~~rvi~Vep~~~~~l~~g~~----~-- 308 (400)
+.++ .||.|+++||++|++..||+||+|+|+||+++|++ .++|+.+ +++|||+|||++++++..+.. .
T Consensus 156 ~~~~-~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~ti 234 (352)
T PRK06721 156 PYRI-EGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETI 234 (352)
T ss_pred chhh-hhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCce
Confidence 8875 79999999999999767999999999999999855 4455554 889999999999987754321 0
Q ss_pred ------CCch------hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC-CCCCeEEEEeC
Q 015783 309 ------YVPS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE-NSGKLIAAIFP 375 (400)
Q Consensus 309 ------~~~~------~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-~~~~~vVvl~t 375 (400)
..|. ......+|+++.|+|+|+++++++|+++|||+++|++|+++++++++++++. .++++||+++|
T Consensus 235 a~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~ 314 (352)
T PRK06721 235 ATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLT 314 (352)
T ss_pred eeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 0111 1124467899999999999999999999999999999999999999887643 46789999999
Q ss_pred CCCCCChhHHhhHHH
Q 015783 376 SFGERYIPTVLFRSI 390 (400)
Q Consensus 376 ~~G~k~~~~~~~~~~ 390 (400)
|+|.||++.+..+.|
T Consensus 315 g~g~k~~~~~~~~~~ 329 (352)
T PRK06721 315 GNGLKDPDIAISSNT 329 (352)
T ss_pred CCCcCchHHHhhhcc
Confidence 999999998765544
No 20
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.3e-56 Score=460.13 Aligned_cols=299 Identities=41% Similarity=0.662 Sum_probs=261.7
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (400)
.+...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++.++.++|.+.+| ++|+++|+||||+|+|++|+
T Consensus 4 ~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~a~ 82 (454)
T TIGR01137 4 NIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALVAA 82 (454)
T ss_pred chHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHHHH
Confidence 46677899999999999998888999999999999999999999999999999987765 67999999999999999999
Q ss_pred HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChh---hHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR---GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 177 ~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~---~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
.+|++|+||||+++++.|+.+++.+||+|+.+++...++ ..++.+.+++++.++.++++||+|+.++..||.|+|+|
T Consensus 83 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~E 162 (454)
T TIGR01137 83 IKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPE 162 (454)
T ss_pred HcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHH
Confidence 999999999999999999999999999999998642222 23566777777655678889999999877799999999
Q ss_pred HHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCC-----C--C--------CCCchhhhhhc
Q 015783 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE-----N--A--------GYVPSILDVQL 318 (400)
Q Consensus 254 i~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g-----~--~--------~~~~~~l~~~~ 318 (400)
|++|+++.||+||+|+|+||+++|++.+|++.+++++||+|||.+++..... . + +..++.+..+.
T Consensus 163 i~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 242 (454)
T TIGR01137 163 ILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRKV 242 (454)
T ss_pred HHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCchh
Confidence 9999976899999999999999999999999999999999999987633210 0 1 12344455677
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHHHHhcc
Q 015783 319 LDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIYEEVQN 396 (400)
Q Consensus 319 ~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~~~~~~ 396 (400)
+|+++.|+|+|+++++++|++.+|+++||+||++++++++++++...++++||+++||+|.||+++.++++|+.....
T Consensus 243 ~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~~~~~~w~~~~~~ 320 (454)
T TIGR01137 243 VDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTKFLNDEWMKDNGF 320 (454)
T ss_pred CCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCcccChHHHHhcCC
Confidence 899999999999999999999999999999999999999988742346789999999999999999999999887543
No 21
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.8e-56 Score=455.80 Aligned_cols=294 Identities=23% Similarity=0.297 Sum_probs=259.8
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (400)
+++..+++|||+++++|++.+|++||+|+|++|||||||+|||.+.+..+.++.. .+.|+++|+||||.++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHH
Confidence 7888899999999999999999999999999999999999999999988764432 456999999999999999999
Q ss_pred HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHh
Q 015783 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (400)
Q Consensus 177 ~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~ 256 (400)
.+|++|+||||.++++.|+..++.|||+|+.++++ ++++.+.|.+++++. +++|++||+|+.++ .||+|+|.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~--~d~a~~~A~~la~e~-g~~~v~pfdd~~vi-aGqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHALKLAEEE-GLTFVPPFDDPDVI-AGQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeeCCCCChHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999864 889999999998886 78999999999985 799999999999
Q ss_pred hhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------CCCchhh
Q 015783 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------GYVPSIL 314 (400)
Q Consensus 257 Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------~~~~~~l 314 (400)
|+++.||+||+|+||||+++|++.++|+++|++|||||||++++++.. +.+ +..++.+
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~ 261 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFEL 261 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHH
Confidence 996679999999999999999999999999999999999999987742 111 2234556
Q ss_pred hhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC--ChhHHhhHHHHH
Q 015783 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGER--YIPTVLFRSIYE 392 (400)
Q Consensus 315 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k--~~~~~~~~~~~~ 392 (400)
.++.+|+++.|+|+|+.+++++|++.+|+++||+||+++|+++++.++...++++||+|+||++.. .+..++.+.+..
T Consensus 262 ~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~IlsGgNid~~~l~~i~~r~l~~ 341 (521)
T PRK12483 262 CRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGANVNFDRLRHVAERAELG 341 (521)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999999999988766545789999999997743 344557777777
Q ss_pred Hhcccc
Q 015783 393 EVQNMQ 398 (400)
Q Consensus 393 ~~~~~~ 398 (400)
+.|+++
T Consensus 342 ~~r~~~ 347 (521)
T PRK12483 342 EQREAI 347 (521)
T ss_pred cCCEEE
Confidence 777664
No 22
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-56 Score=431.08 Aligned_cols=277 Identities=25% Similarity=0.342 Sum_probs=253.0
Q ss_pred hHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Q 015783 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (400)
Q Consensus 94 ~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (400)
...+++..+.+|||++++.|++.+|++||+|+|++||+||||.|||++.+..+.+++.. ...|+++|+||||.++|+
T Consensus 15 A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGvA~ 91 (347)
T COG1171 15 AAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGVAY 91 (347)
T ss_pred HHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHHHH
Confidence 45688888999999999999999999999999999999999999999999987644221 567999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 174 aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
+|+++|++++||||.+++..|++.++.|||+|++++.+ |+++...|.++++++ |+.|+++|++|+.+ +||.|++.|
T Consensus 92 aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~--~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi~lE 167 (347)
T COG1171 92 AAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTIALE 167 (347)
T ss_pred HHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHHHHH
Confidence 99999999999999999999999999999999999876 899999999999996 89999999999984 899999999
Q ss_pred HHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----C-------------------CCCCC
Q 015783 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----E-------------------NAGYV 310 (400)
Q Consensus 254 i~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g-------------------~~~~~ 310 (400)
|++|+...||+||||+||||+++|++.++|...|++|||||||++++++.. | .++..
T Consensus 168 ileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~ 247 (347)
T COG1171 168 ILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDL 247 (347)
T ss_pred HHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHH
Confidence 999996557999999999999999999999999999999999999998753 2 23667
Q ss_pred chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCC
Q 015783 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFG 378 (400)
Q Consensus 311 ~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G 378 (400)
+|.+.++++|+++.|+|+|+.++++.+++.+++++||+++.++|++++...+. ..+++|++|+||+.
T Consensus 248 tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~ilSGgN 314 (347)
T COG1171 248 TFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVILSGGN 314 (347)
T ss_pred HHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEecCCC
Confidence 88899999999999999999999999999999999999999999998877654 57788999999855
No 23
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.3e-55 Score=438.51 Aligned_cols=296 Identities=23% Similarity=0.224 Sum_probs=255.6
Q ss_pred HHHHhhccCCCcchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEE
Q 015783 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160 (400)
Q Consensus 81 l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv 160 (400)
+...|+++||.......+++++|+|||+++++|++.+|.+||+|+|++|||||||||++.+++..++++| .++|+
T Consensus 8 ~~~~~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g-----~~~iv 82 (353)
T PRK07409 8 LIEAYRDRLPVTDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEG-----AKAVI 82 (353)
T ss_pred chHHHHHhCCCCCccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCC-----CCEEE
Confidence 4444999999866556699999999999999999888899999999999999999999999999999988 46899
Q ss_pred EeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCC
Q 015783 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN 239 (400)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~ 239 (400)
++|+||||+|+|++|+.+|++|+||||++ .++.|+++|+.+||+|+.+++. ++++.+.+.+++++. +++++++ .|
T Consensus 83 ~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~l~~~~-~~~~~~~-~n 158 (353)
T PRK07409 83 CASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGN--FDDALEIVRELAEKY-PVTLVNS-VN 158 (353)
T ss_pred EECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CceecCC-CC
Confidence 99999999999999999999999999997 6899999999999999999864 788888888888776 4666664 58
Q ss_pred hHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCC------CcEEEEEeCCCCccccCCCCC----C
Q 015783 240 MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVISGENAG----Y 309 (400)
Q Consensus 240 ~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~------~~rvi~Vep~~~~~l~~g~~~----~ 309 (400)
+.++ .||.|+++||++|++..||+||+|+|+||+++|++.+|++..+ .+|||+|||.+++++..+.+. .
T Consensus 159 ~~~~-~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~t 237 (353)
T PRK07409 159 PYRI-EGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPET 237 (353)
T ss_pred chhh-hhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcc
Confidence 8885 7999999999999976799999999999999999999988632 489999999998777543320 0
Q ss_pred --------Cch------hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC-CCCCeEEEEe
Q 015783 310 --------VPS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE-NSGKLIAAIF 374 (400)
Q Consensus 310 --------~~~------~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-~~~~~vVvl~ 374 (400)
.+. .+.++..++++.|+|+|+++++++|++++|++++|+||+++++++++.+++. .++++||+++
T Consensus 238 i~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~ 317 (353)
T PRK07409 238 IATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTL 317 (353)
T ss_pred eeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEe
Confidence 011 1123445678999999999999999999999999999999999998887643 4678999999
Q ss_pred CCCCCCChhHHh
Q 015783 375 PSFGERYIPTVL 386 (400)
Q Consensus 375 t~~G~k~~~~~~ 386 (400)
||+|.||++.+.
T Consensus 318 tg~g~k~~~~~~ 329 (353)
T PRK07409 318 TGNGLKDPDTAI 329 (353)
T ss_pred cCccccchHHHH
Confidence 999999999653
No 24
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=6.6e-56 Score=446.85 Aligned_cols=296 Identities=22% Similarity=0.201 Sum_probs=258.4
Q ss_pred chHHHHHhhccCCCcchHHHhhcccCCCCceecccccccCCC-eEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCC
Q 015783 78 TREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156 (400)
Q Consensus 78 ~~~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~-~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~ 156 (400)
..++|| |+++||.. ...+++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.+++++| .
T Consensus 44 ~~~~wr-y~~~lp~~--~~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g-----~ 115 (397)
T PRK06260 44 GRGVWR-YKELLPVK--KKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELG-----V 115 (397)
T ss_pred Ccceee-ehhhcCCC--CCcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcC-----C
Confidence 457998 99999985 2379999999999999999998886 9999999999999999999999999999998 4
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
++|+++|+||||+|+|++|+.+|++|+||||.+ +++.|+.+++.+||+|+.++++ ++++++.+.+++++. ++++++
T Consensus 116 ~~vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-g~y~~~ 192 (397)
T PRK06260 116 KTVACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDGN--FDDALDMVVELAKEG-KIYLLN 192 (397)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECCc--HHHHHHHHHHHHhhC-CEEeec
Confidence 689999999999999999999999999999997 7899999999999999999875 788888899888775 678888
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhCC-CCCEEEEecCCChhHHhHHHHHHhcC------CCcEEEEEeCCCCccccC----
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVISG---- 304 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~~-~pD~vv~pvG~Gg~~aGi~~~~k~~~------~~~rvi~Vep~~~~~l~~---- 304 (400)
++ ||.++ +||+|+++||++|+++ .||+||+|+|+||+++|++.+|+++. +.+|||+|||++|+++..
T Consensus 193 ~~-np~~~-~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~ 270 (397)
T PRK06260 193 SI-NPFRL-EGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKK 270 (397)
T ss_pred CC-Cchhh-cchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHc
Confidence 77 88884 7999999999999976 69999999999999999999999875 348999999999976632
Q ss_pred CCC--------CC------C--ch------hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcC
Q 015783 305 ENA--------GY------V--PS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARR 362 (400)
Q Consensus 305 g~~--------~~------~--~~------~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~ 362 (400)
|.. .. + |. .+.++..+.++.|+|+|+++++++|++++||+++|++|+++++++++.++
T Consensus 271 g~~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~ 350 (397)
T PRK06260 271 GKDEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEE 350 (397)
T ss_pred CCCcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHc
Confidence 111 00 0 11 12344557899999999999999999999999999999999999999887
Q ss_pred CC-CCCCeEEEEeCCCCCCChhHHh
Q 015783 363 PE-NSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 363 ~~-~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
+. .++++||+++||+|.|+.+.+.
T Consensus 351 g~i~~~~~VV~i~tG~glK~~~~~~ 375 (397)
T PRK06260 351 GVIDKDERVVCITTGHLLKDPDAAI 375 (397)
T ss_pred CCCCCCCeEEEEeCCCccCchHHHH
Confidence 54 4688999999999999987653
No 25
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-55 Score=442.90 Aligned_cols=295 Identities=21% Similarity=0.316 Sum_probs=255.0
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.+++++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+.+. .+.||++|+||||+++|
T Consensus 9 ~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~avA 84 (403)
T PRK08526 9 QAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGVA 84 (403)
T ss_pred HHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999998876654 46799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||++++..|++.++.|||+|+.++++ ++++++.+.+++++. +++|++||+|+.+ +.||+|+|.
T Consensus 85 ~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~--~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~ 160 (403)
T PRK08526 85 ISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDN--YDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIAL 160 (403)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHH
Confidence 999999999999999999999999999999999999864 889999999988875 7899999999987 589999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------CCC
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------GYV 310 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------~~~ 310 (400)
||++|+ +.||+||+|+|+||+++|++.++|+.+|++|||||||++|+++.. +.+ +..
T Consensus 161 EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~ 239 (403)
T PRK08526 161 EMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPI 239 (403)
T ss_pred HHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHH
Confidence 999999 479999999999999999999999999999999999999987631 211 122
Q ss_pred chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh---HHhh
Q 015783 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP---TVLF 387 (400)
Q Consensus 311 ~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~---~~~~ 387 (400)
++.+..+.+|+++.|+|+|+.+++++|++++|++++|++++++|++++.... ..++++||+++|| |.-+++ .++.
T Consensus 240 ~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~-~~~~~~Vv~ilsG-Gnid~~~~~~i~~ 317 (403)
T PRK08526 240 NLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKID-LKKGKKIGVVLSG-GNIDVQMLNIIIE 317 (403)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCccc-cccCCeEEEEECC-CCCCHHHHHHHHH
Confidence 2334457899999999999999999999999999999999999998753222 1357899999999 544443 3466
Q ss_pred HHHHHHhcccc
Q 015783 388 RSIYEEVQNMQ 398 (400)
Q Consensus 388 ~~~~~~~~~~~ 398 (400)
.++..+.|.++
T Consensus 318 ~~l~~~~r~~~ 328 (403)
T PRK08526 318 KGLIKSYRKMK 328 (403)
T ss_pred HHHHhcCCEEE
Confidence 66666666654
No 26
>PLN02569 threonine synthase
Probab=100.00 E-value=2.1e-55 Score=449.47 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=258.6
Q ss_pred cchHHHHHhhc-cCCCcchHHHhhcccCCCCceeccccccc-CC-CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCC
Q 015783 77 STREIEKEEGN-DFHGVNIAEDVTQLIGRTPMVYLNKVTEG-CV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153 (400)
Q Consensus 77 ~~~~l~~~~~~-~lp~~~~~~~v~~~~~~TPL~~~~~l~~~-lg-~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~ 153 (400)
...++|+ |++ ++|..+....+++++|+|||+++++|++. +| .+||+|+|++|||||||||++.+.+..+++.|...
T Consensus 106 ~~~g~wr-y~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~ 184 (484)
T PLN02569 106 YGSGVWS-KKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMA 184 (484)
T ss_pred CCCCccc-cccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhcc
Confidence 3467998 888 68887666679999999999999999988 88 59999999999999999999999999998877421
Q ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCce
Q 015783 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAY 232 (400)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~ 232 (400)
.....|+++|+||||.|+|++|+.+|++|+||||++ .+..|+.+|+.+||+|+.++++ ++++++.+.+++++. +++
T Consensus 185 ~~~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~--~d~a~~~a~e~~~~~-~~~ 261 (484)
T PLN02569 185 KPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTD--FDGCMRLIREVTAEL-PIY 261 (484)
T ss_pred CCccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCE
Confidence 112579999999999999999999999999999996 7889999999999999999975 889999999988775 678
Q ss_pred eeCCCCChHHHHHHHHhHHHHHHhhhCCC-CCEEEEecCCChhHHhHHHHHHhcC------CCcEEEEEeCCCCccccC-
Q 015783 233 MFQQFDNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVISG- 304 (400)
Q Consensus 233 ~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~-pD~vv~pvG~Gg~~aGi~~~~k~~~------~~~rvi~Vep~~~~~l~~- 304 (400)
+++++ |+.++ +||+|+++||++|++++ ||+||+|+|+||++.|++++|+++. +.+|||+|||++|+++..
T Consensus 262 ~~n~~-Np~~i-eG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a 339 (484)
T PLN02569 262 LANSL-NSLRL-EGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRA 339 (484)
T ss_pred ecCCC-Ccchh-HhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHH
Confidence 88887 88885 79999999999999875 9999999999999999999999863 468999999999977752
Q ss_pred ---CCC--------C--------CCchhh------hhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHH
Q 015783 305 ---ENA--------G--------YVPSIL------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISL 359 (400)
Q Consensus 305 ---g~~--------~--------~~~~~l------~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l 359 (400)
|.. . ..|..+ ..+..+.++.|+|+|+++++++ ++++||+++|+||++++++.++
T Consensus 340 ~~~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl 418 (484)
T PLN02569 340 YKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKL 418 (484)
T ss_pred HHcCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHH
Confidence 210 0 012211 1223345799999999999999 8899999999999999999999
Q ss_pred hcCCC-CCCCeEEEEeCCCCCCChhHHh
Q 015783 360 ARRPE-NSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 360 ~~~~~-~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
.+++. .++++||+++||+|.||.+..+
T Consensus 419 ~~~g~i~~~~~VV~i~Tg~GlK~~~~~~ 446 (484)
T PLN02569 419 RASGVIGPTDRTVVVSTAHGLKFTQSKI 446 (484)
T ss_pred HHcCCCCCCCcEEEEeCCCcccChhHHH
Confidence 88753 5678999999999999988544
No 27
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=2.6e-55 Score=443.52 Aligned_cols=296 Identities=20% Similarity=0.315 Sum_probs=258.4
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.+.+++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+.+. .+.|+++|+||||.|+|
T Consensus 14 ~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~A 89 (406)
T PRK06382 14 YAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGVA 89 (406)
T ss_pred HHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999998876654 45699999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||+++++.|+++++.|||+|+.++++ ++++.+.+.+++++. +++|++||+|+.++ +||+|+|+
T Consensus 90 ~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~--~~~a~~~a~~la~~~-~~~~v~~~~~~~~i-~g~~t~~~ 165 (406)
T PRK06382 90 YAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD--YDEAHRYADKIAMDE-NRTFIEAFNDRWVI-SGQGTIGL 165 (406)
T ss_pred HHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCccCChHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999864 788999999998875 78999999999985 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCcccc----CCC------------------CCCC
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----GEN------------------AGYV 310 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~----~g~------------------~~~~ 310 (400)
||++|+ +.||+||+|+|+||+++|++.++|+.++++|||||||++++++. .+. |+..
T Consensus 166 Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~ 244 (406)
T PRK06382 166 EIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDL 244 (406)
T ss_pred HHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHH
Confidence 999999 47999999999999999999999999999999999999998762 111 1223
Q ss_pred chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCC--CChhHHhhH
Q 015783 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGE--RYIPTVLFR 388 (400)
Q Consensus 311 ~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~--k~~~~~~~~ 388 (400)
++.+.++.+|+++.|+|+|+.+++++|++++|+++||+||++++++... +. ..++++||+|+||+.. .++..++.+
T Consensus 245 ~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~-~~-~~~~~~Vv~i~sGGn~d~~~~~~~~~~ 322 (406)
T PRK06382 245 TFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG-KV-DVKGKKVAIVVSGGNINPLLMSKIIYK 322 (406)
T ss_pred HHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc-cc-cCCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4456678899999999999999999999999999999988888766432 21 2357899999997442 477778889
Q ss_pred HHHHHhccccc
Q 015783 389 SIYEEVQNMQQ 399 (400)
Q Consensus 389 ~~~~~~~~~~~ 399 (400)
+|..+.|.+|.
T Consensus 323 ~~~~~~~~~rl 333 (406)
T PRK06382 323 ELENLGQLVRI 333 (406)
T ss_pred HHHhcCCEEEE
Confidence 99998888764
No 28
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3.3e-55 Score=434.27 Aligned_cols=284 Identities=20% Similarity=0.163 Sum_probs=248.6
Q ss_pred hHHHHHhhccCCCcchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcE
Q 015783 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTV 158 (400)
Q Consensus 79 ~~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~ 158 (400)
.++|| |+++||..+. ..+++++|.|||+++. .+||+|+|++|||||||||++.+++..+++.| .++
T Consensus 41 ~~~wr-y~~~lP~~~~-~~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g-----~~~ 106 (347)
T PRK08329 41 LDMRR-YIDYLPVDEE-FLPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEG-----INE 106 (347)
T ss_pred cchhh-hHHhCCCCCC-CCCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcC-----CCE
Confidence 47898 9999998653 4589999999999873 48999999999999999999999999999998 468
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (400)
|+++|+||||+|+|++|+++|++|+||||.++++.|+.+|+.+||+|+.++++ ++++.+.+.+++++. +.+|++++.
T Consensus 107 vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~ 183 (347)
T PRK08329 107 VVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWL 183 (347)
T ss_pred EEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCC
Confidence 99999999999999999999999999999999999999999999999999875 566778888887774 678889999
Q ss_pred ChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcC------CCcEEEEEeCCCCccccCC--CC---
Q 015783 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVISGE--NA--- 307 (400)
Q Consensus 239 ~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~------~~~rvi~Vep~~~~~l~~g--~~--- 307 (400)
||.++ +||+|+++||++|++ .||+||+|+|+||+++|++++|+++. +.+|||+|||++|+++... .+
T Consensus 184 np~~~-eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~ 261 (347)
T PRK08329 184 NPYFL-EGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKL 261 (347)
T ss_pred Cchhh-ccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCce
Confidence 99885 799999999999996 79999999999999999999999863 5689999999998776431 11
Q ss_pred ------CCC-----chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC-CCCCeEEEEeC
Q 015783 308 ------GYV-----PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE-NSGKLIAAIFP 375 (400)
Q Consensus 308 ------~~~-----~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-~~~~~vVvl~t 375 (400)
... .+.+.++..+.++.|+|+|+++++++|++ +||+++|+||+++|+++++.+++. .++++||+++|
T Consensus 262 a~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~T 340 (347)
T PRK08329 262 ADGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLS 340 (347)
T ss_pred eeeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeC
Confidence 011 12344566778999999999999999985 899999999999999999998875 47889999999
Q ss_pred CCCCCCh
Q 015783 376 SFGERYI 382 (400)
Q Consensus 376 ~~G~k~~ 382 (400)
|+|.|++
T Consensus 341 G~glK~~ 347 (347)
T PRK08329 341 GSGLKNL 347 (347)
T ss_pred CCCccCC
Confidence 9999975
No 29
>PLN02970 serine racemase
Probab=100.00 E-value=4.1e-55 Score=430.60 Aligned_cols=279 Identities=18% Similarity=0.234 Sum_probs=243.5
Q ss_pred hHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Q 015783 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (400)
Q Consensus 94 ~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (400)
+.+.+...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++. .++|+++|+||||.|+|+
T Consensus 17 a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 92 (328)
T PLN02970 17 ARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALAL 92 (328)
T ss_pred HHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHH
Confidence 4567888899999999999999889999999999999999999999999999876554 467999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 174 aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
+|+.+|++|+||||+++++.|+.+|+.+||+|+.++.+ ++++.+.+.+++++ ++++|++||+|+.++ .||+|+|+|
T Consensus 93 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~la~~-~g~~~~~~~~n~~~~-~g~~t~g~E 168 (328)
T PLN02970 93 AAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPT--VESREAVAARVQQE-TGAVLIHPYNDGRVI-SGQGTIALE 168 (328)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCC--HHHHHHHHHHHHHh-cCCEEeCCCCCcchh-hehHHHHHH
Confidence 99999999999999999999999999999999999865 67788888888876 589999999999885 799999999
Q ss_pred HHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC-----------------CCCch
Q 015783 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA-----------------GYVPS 312 (400)
Q Consensus 254 i~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~-----------------~~~~~ 312 (400)
|++|+. .||+||+|+|+||+++|++.+||+.++++|||+|||.+++++.. +.+ +..++
T Consensus 169 i~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~ 247 (328)
T PLN02970 169 FLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTW 247 (328)
T ss_pred HHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHH
Confidence 999995 69999999999999999999999999999999999999986632 211 11124
Q ss_pred hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcC-CC-CC-CCeEEEEeCCCCCCCh
Q 015783 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARR-PE-NS-GKLIAAIFPSFGERYI 382 (400)
Q Consensus 313 ~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~-~~-~~-~~~vVvl~t~~G~k~~ 382 (400)
...++.+|+++.|+|+|+++++++|++++|+++||++|++++++++...+ +. .+ +++||+++|| |..++
T Consensus 248 ~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~~G-gn~~~ 319 (328)
T PLN02970 248 PVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVLSG-GNVDL 319 (328)
T ss_pred HHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEECC-CCCCH
Confidence 45567889999999999999999999999999999999999998865432 22 23 4789999998 44443
No 30
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=2.3e-55 Score=444.39 Aligned_cols=294 Identities=26% Similarity=0.365 Sum_probs=256.6
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.+...+...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+++. .++|+++|+||||+++|
T Consensus 11 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 86 (404)
T PRK08198 11 EARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVA 86 (404)
T ss_pred HHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999886654 57899999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||++++..|+++++.|||+|+.++.+ ++++++.+.+++++. +++|++||+|+.++ .||.|+|+
T Consensus 87 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t~a~ 162 (404)
T PRK08198 87 YAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV--YDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGTIGL 162 (404)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHHHHH
Confidence 999999999999999999999999999999999999754 789999999998875 78999999999885 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------CCCC
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----EN------------------AGYV 310 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~------------------~~~~ 310 (400)
||++|+ +++|+||+|+|+||+++|++.+||+.++++|||||||++|+++.. |. ++..
T Consensus 163 EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~ 241 (404)
T PRK08198 163 EILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDL 241 (404)
T ss_pred HHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHH
Confidence 999999 479999999999999999999999999999999999999987632 21 1223
Q ss_pred chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCC--CChhHHhhH
Q 015783 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGE--RYIPTVLFR 388 (400)
Q Consensus 311 ~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~--k~~~~~~~~ 388 (400)
++.+.++.+|+++.|+|+|+++++++|++++|++++|+||+++|+++++.. ..++++||+++||+.. .++..++..
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~--~~~~~~vv~vl~ggn~~~~~l~~ii~~ 319 (404)
T PRK08198 242 TFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKL--DVKGKKVVAVLSGGNIDVLLLSRVIER 319 (404)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchh--hcCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 445567889999999999999999999999999999999999999887653 2468899999998543 244445566
Q ss_pred HHHHHhccc
Q 015783 389 SIYEEVQNM 397 (400)
Q Consensus 389 ~~~~~~~~~ 397 (400)
++..+.+.+
T Consensus 320 gl~~~gr~~ 328 (404)
T PRK08198 320 GLVAAGRYL 328 (404)
T ss_pred hhhhcCCEE
Confidence 666666544
No 31
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=2.6e-55 Score=443.29 Aligned_cols=296 Identities=22% Similarity=0.272 Sum_probs=254.8
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+.+..+.+... .+.|+++|+||||.++|
T Consensus 5 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~A 80 (409)
T TIGR02079 5 AARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFA 80 (409)
T ss_pred HHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999987543332 45799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE---EEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHh
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEI---ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDS 249 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V---~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~t 249 (400)
++|+.+|++|+||||+.+++.|+.+++.|||+| +.++. +++++++++.+++++. +++|++||+|+.++ .||+|
T Consensus 81 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t 156 (409)
T TIGR02079 81 YACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGD--TFDQCAAAAREHVEDH-GGTFIPPFDDPRII-EGQGT 156 (409)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCHhHh-hhhHH
Confidence 999999999999999999999999999999974 34443 4889999999998875 78999999999985 79999
Q ss_pred HHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------
Q 015783 250 TGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------ 307 (400)
Q Consensus 250 i~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------ 307 (400)
+|+||++|++..||+||+|+|+||+++|++.+||+.++++|||||||++|+++.. |.+
T Consensus 157 i~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~ 236 (409)
T TIGR02079 157 VAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRV 236 (409)
T ss_pred HHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCC
Confidence 9999999997679999999999999999999999999999999999999988742 221
Q ss_pred CCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh---H
Q 015783 308 GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP---T 384 (400)
Q Consensus 308 ~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~---~ 384 (400)
+..++.+..+.+|+++.|+|+|+.+++++|++++|+++||+||+++|+++++.++ .++++||+|+||+ .-+++ .
T Consensus 237 g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv~ilsGg-n~d~~~~~~ 313 (409)
T TIGR02079 237 GDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVVCVVSGG-NNDIERTEE 313 (409)
T ss_pred cHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEECCC-CCCHHHHHH
Confidence 1123344567899999999999999999999999999999999999999887643 4688999999984 43333 4
Q ss_pred HhhHHHHHHhccccc
Q 015783 385 VLFRSIYEEVQNMQQ 399 (400)
Q Consensus 385 ~~~~~~~~~~~~~~~ 399 (400)
++..++..+.|.++.
T Consensus 314 ~~~~~l~~~~r~~~~ 328 (409)
T TIGR02079 314 IRERSLLYEGLKHYF 328 (409)
T ss_pred HHHHHHHhcCCEEEE
Confidence 567777777777654
No 32
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=6.5e-55 Score=429.33 Aligned_cols=282 Identities=25% Similarity=0.358 Sum_probs=242.2
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.+++.+...+++|||+++++|++.+|++||+|+|++|||||||||++.+++..+.+... .++|+++|+||||.|+|
T Consensus 16 ~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~alA 91 (333)
T PRK08638 16 EAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGVA 91 (333)
T ss_pred HHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHHH
Confidence 35668888999999999999999888999999999999999999999999998765433 45799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||++.++.|+.+|+.+||+|+.++++ ++++++.+.+++++. +++|++||+|+.++ .||.|+|+
T Consensus 92 ~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~a~ 167 (333)
T PRK08638 92 LSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDN--FNDTIAKVEEIVEEE-GRTFIPPYDDPKVI-AGQGTIGL 167 (333)
T ss_pred HHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEEcCcCCCcchh-ccccHHHH
Confidence 999999999999999999999999999999999999754 788899999998886 77999999999885 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----------C---CCchh-
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----GENA-----------G---YVPSI- 313 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~----~g~~-----------~---~~~~~- 313 (400)
||++|+ +++|+||+|+|+||+++|++.+||+.++++|||+|||++|+++. .+.+ + ..|..
T Consensus 168 Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~ 246 (333)
T PRK08638 168 EILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNL 246 (333)
T ss_pred HHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHH
Confidence 999999 57999999999999999999999999999999999999987654 2211 0 12222
Q ss_pred ---hhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhH
Q 015783 314 ---LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPT 384 (400)
Q Consensus 314 ---l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~ 384 (400)
+.++.+|+++.|+|+|+++++++|++++|++++|+++++++++.........++++||+|+|| |..+++.
T Consensus 247 ~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~~G-gn~~~~~ 319 (333)
T PRK08638 247 TYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAIISG-GNVDLSR 319 (333)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEECC-CCCCHHH
Confidence 235789999999999999999999999999999987777766554322222467899999997 7777764
No 33
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=6.3e-55 Score=430.26 Aligned_cols=290 Identities=19% Similarity=0.191 Sum_probs=249.9
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
+++..+...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..++++|.+ .++|+++|+||||.|+|
T Consensus 12 ~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~---~~~vv~~SsGN~g~alA 88 (338)
T PRK06608 12 AAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKL---PDKIVAYSTGNHGQAVA 88 (338)
T ss_pred HHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCc---CCeEEEECCCHHHHHHH
Confidence 355678889999999999999999999999999999999999999999999999999864 25899999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||.++++.|+.+|+.+||+|+.++. .+++.+.+.+ +++ +++||+++|+|+.++ +||+|++.
T Consensus 89 ~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~-~g~~t~a~ 162 (338)
T PRK06608 89 YASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTI-AGAGTLCY 162 (338)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHh-ccHHHHHH
Confidence 99999999999999999999999999999999999974 3567777777 444 578999999999985 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-------CCC-----------
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----GENA-------GYV----------- 310 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~----~g~~-------~~~----------- 310 (400)
||++|++++||+||+|+|+||+++|++.++++.+++++||+|||++|+++. .+.+ ..+
T Consensus 163 Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~ 242 (338)
T PRK06608 163 EALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSA 242 (338)
T ss_pred HHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCH
Confidence 999999768999999999999999999999999999999999999997653 2211 000
Q ss_pred -chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCC--CCChhHHhh
Q 015783 311 -PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFG--ERYIPTVLF 387 (400)
Q Consensus 311 -~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G--~k~~~~~~~ 387 (400)
++... +.+|+++.|+|+|+++++++|++.+|+++||+||++++++++++++. .++++||+++||++ .+|++.++.
T Consensus 243 ~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~v~tgg~~d~~~~~~~~~ 320 (338)
T PRK06608 243 RTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLVILSGGNIDPILYNELWK 320 (338)
T ss_pred HHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEEEeCCCccCHHHHHHHHH
Confidence 12222 34789999999999999999999999999999999999999887653 46789999999955 566666666
Q ss_pred HHHHHH
Q 015783 388 RSIYEE 393 (400)
Q Consensus 388 ~~~~~~ 393 (400)
++|+.+
T Consensus 321 ~~~~~~ 326 (338)
T PRK06608 321 EDYLTI 326 (338)
T ss_pred HhhhcC
Confidence 666543
No 34
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.5e-54 Score=431.90 Aligned_cols=318 Identities=21% Similarity=0.221 Sum_probs=263.7
Q ss_pred CccCCCCCcccccccchHHHHHhhccCCCcchHHH----hhcccC-CCCceecccccccCC-CeEEEEeCCCCCCCcchh
Q 015783 63 GAAASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLIG-RTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKD 136 (400)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~----v~~~~~-~TPL~~~~~l~~~lg-~~i~~K~E~~nptGSfK~ 136 (400)
+.+...+.|+.+.....+|.+.|.+...+++...+ +..+++ +|||+++++|++.+| ++||+|+|++|||||||+
T Consensus 16 g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~ 95 (402)
T PRK13028 16 GEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKI 95 (402)
T ss_pred CCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHH
Confidence 34888999999999999999999998877754444 344555 799999999999994 899999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH---HHHHHHHHcCCEEEEeCC-CC
Q 015783 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL---ERRILLRAFGAEIILTDP-EK 212 (400)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~---~~~~~l~~~GA~V~~~~~-~~ 212 (400)
|++..++..+++.|+ .+.|+++|+||||+|+|++|+.+|++|+||||+...+ .++.+|+.+||+|+.++. ..
T Consensus 96 r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~ 171 (402)
T PRK13028 96 NNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGR 171 (402)
T ss_pred HHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCC
Confidence 999999999999995 5677789999999999999999999999999986433 567899999999999985 34
Q ss_pred ChhhHHHHHHHH-HHhCCCceeeCCC-----CChHHHHHHHHhHHHHHHhhhC----CCCCEEEEecCCChhHHhHHHHH
Q 015783 213 GLRGALDKAEEI-VLNTPNAYMFQQF-----DNMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFL 282 (400)
Q Consensus 213 ~~~~a~~~a~~~-a~~~~~~~~~~~~-----~~~~~~~~g~~ti~~Ei~~Ql~----~~pD~vv~pvG~Gg~~aGi~~~~ 282 (400)
++++++++|.+. +.+.++.+|+.+. ..|.++..||+|++.||.+|+. ..||+||+|||+|||++|++.+|
T Consensus 172 ~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f 251 (402)
T PRK13028 172 TLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAF 251 (402)
T ss_pred CHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHH
Confidence 588899888664 4443466776321 1245556699999999999973 36999999999999999999999
Q ss_pred HhcCCCcEEEEEeCCC--------CccccCCCCCC-------------------------------Cc--hhhhhhccCe
Q 015783 283 KMMNKEIKVVGVEPAE--------RSVISGENAGY-------------------------------VP--SILDVQLLDE 321 (400)
Q Consensus 283 k~~~~~~rvi~Vep~~--------~~~l~~g~~~~-------------------------------~~--~~l~~~~~~~ 321 (400)
++ .++++||||||.+ ++++..|.++. .| +.+.....++
T Consensus 252 ~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~ 330 (402)
T PRK13028 252 LD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVE 330 (402)
T ss_pred Hh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcE
Confidence 86 4889999999998 66675543310 01 1123345578
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 322 VIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 322 ~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
++.|+|+|+++++++|++.|||+++++||+++|++++++++. .++++||+++||+|+||++.+.
T Consensus 331 ~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~VVv~lsG~G~kd~~~~~ 394 (402)
T PRK13028 331 YVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETILVNLSGRGDKDIDYVA 394 (402)
T ss_pred EEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeEEEEECCCCccCHHHHH
Confidence 999999999999999999999999999999999999998763 4688999999999999998763
No 35
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.7e-54 Score=425.48 Aligned_cols=287 Identities=21% Similarity=0.247 Sum_probs=248.6
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.++.++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.+++++|. .++|+++|+||||+|+|
T Consensus 8 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~alA 83 (322)
T PRK07476 8 RARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRALA 83 (322)
T ss_pred HHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999998886 44599999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||+++++.|+.+|+.|||+|+.++.+ ++++++.+.+++++. +++|++||+|+.++ .||+|+++
T Consensus 84 ~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~~~ 159 (322)
T PRK07476 84 YAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREE-GLTMVPPFDDPRII-AGQGTIGL 159 (322)
T ss_pred HHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCccee-echhHHHH
Confidence 999999999999999999999999999999999999864 678888998888775 67999999999985 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC--------------------C
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA--------------------G 308 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~--------------------~ 308 (400)
||++|+. ++|+||+|+|+||+++|++.+||+.++++|||+|||++++++.. +.+ +
T Consensus 160 Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~ 238 (322)
T PRK07476 160 EILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDN 238 (322)
T ss_pred HHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCc
Confidence 9999994 69999999999999999999999999999999999998875431 111 1
Q ss_pred CCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhH
Q 015783 309 YVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFR 388 (400)
Q Consensus 309 ~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~ 388 (400)
..++.+.+..+|+++.|+|+|+++++++|++++|++++|++++++++++.... ...+++||+++||++. |...+.
T Consensus 239 ~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~~~--~~~~~~Vvvi~tGg~~---~~~~~~ 313 (322)
T PRK07476 239 RYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAGKI--AARDGPIVVVVSGANI---DMELHR 313 (322)
T ss_pred HHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhCCc--ccCCCcEEEEECCCCC---CHHHHH
Confidence 12334556788999999999999999999999999999999999998873211 2234899999998775 444455
Q ss_pred HHHHH
Q 015783 389 SIYEE 393 (400)
Q Consensus 389 ~~~~~ 393 (400)
+++.+
T Consensus 314 ~~~~~ 318 (322)
T PRK07476 314 RIING 318 (322)
T ss_pred HHHhh
Confidence 55443
No 36
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.4e-54 Score=446.12 Aligned_cols=294 Identities=23% Similarity=0.302 Sum_probs=258.3
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (400)
+++..+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+.+..+.+... .+.|+++|+||||.++|++|+
T Consensus 10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa~ 85 (499)
T TIGR01124 10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSAA 85 (499)
T ss_pred HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHHH
Confidence 6788899999999999999999999999999999999999999999988744432 467999999999999999999
Q ss_pred HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHh
Q 015783 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (400)
Q Consensus 177 ~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~ 256 (400)
++|++|+||||.+++..|+..++.+||+|+.++.+ ++++.+.|.+++++. +++|++||+|+.++ .||+|+|.||++
T Consensus 86 ~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~--~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI~~ 161 (499)
T TIGR01124 86 RLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGAN--FDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEILR 161 (499)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCcC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHHHH
Confidence 99999999999999999999999999999999754 789999999998885 78999999999985 899999999999
Q ss_pred hhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------CCCchhh
Q 015783 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------GYVPSIL 314 (400)
Q Consensus 257 Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------~~~~~~l 314 (400)
|+++++|+||+|+||||+++|++.++|+.++++|||||||++++++.. |.+ +..++.+
T Consensus 162 q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~ 241 (499)
T TIGR01124 162 QVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRL 241 (499)
T ss_pred hCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHH
Confidence 997689999999999999999999999999999999999999987743 221 2234556
Q ss_pred hhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC--ChhHHhhHHHHH
Q 015783 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGER--YIPTVLFRSIYE 392 (400)
Q Consensus 315 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k--~~~~~~~~~~~~ 392 (400)
.++++|+++.|+|+|+.++++++++.+|+++||+||+++|++++++++...++++||+|+||++.. .+..++.+.+..
T Consensus 242 ~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~sG~n~~~~~l~~~~~r~~~~ 321 (499)
T TIGR01124 242 CQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAILSGANMNFHRLRYVSERCELG 321 (499)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999999999999999999999998776545688999999997754 233456666666
Q ss_pred Hhcccc
Q 015783 393 EVQNMQ 398 (400)
Q Consensus 393 ~~~~~~ 398 (400)
+.|+++
T Consensus 322 ~~re~~ 327 (499)
T TIGR01124 322 EQREAL 327 (499)
T ss_pred cCCEEE
Confidence 666554
No 37
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=3e-54 Score=430.73 Aligned_cols=318 Identities=20% Similarity=0.261 Sum_probs=260.9
Q ss_pred CccCCCCCcccccccchHHHHHhhccCCCcchHHH----hhcccC-CCCceecccccccC-CCeEEEEeCCCCCCCcchh
Q 015783 63 GAAASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKD 136 (400)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~----v~~~~~-~TPL~~~~~l~~~l-g~~i~~K~E~~nptGSfK~ 136 (400)
+.+...+.|+.+.....+|.+.|.+...+++.... +..++| +|||+++++|++.+ |++||+|+|++|||||||+
T Consensus 12 g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~ 91 (397)
T PRK04346 12 GEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKI 91 (397)
T ss_pred cCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHH
Confidence 34888999999999999999999998877654443 345565 69999999999999 4899999999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-c--HHHHHHHHHcCCEEEEeCC-CC
Q 015783 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-N--LERRILLRAFGAEIILTDP-EK 212 (400)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~--~~~~~~l~~~GA~V~~~~~-~~ 212 (400)
|++..++..+++.|+ +++|+++|+||||+|+|++|+++|++|+||||+.. + ..++.+|+.+||+|+.++. ..
T Consensus 92 r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~ 167 (397)
T PRK04346 92 NNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSR 167 (397)
T ss_pred HHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCC
Confidence 999999999999996 56778899999999999999999999999999853 3 3577899999999999985 34
Q ss_pred ChhhHHHHHHHH-HHhCCCceee-CCCCC----hHHHHHHHHhHHHHHHhhhC----CCCCEEEEecCCChhHHhHHHHH
Q 015783 213 GLRGALDKAEEI-VLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFL 282 (400)
Q Consensus 213 ~~~~a~~~a~~~-a~~~~~~~~~-~~~~~----~~~~~~g~~ti~~Ei~~Ql~----~~pD~vv~pvG~Gg~~aGi~~~~ 282 (400)
+++++++++.+. +.+.++.+|+ .++.+ |.++..||+|+|.||.+|+. ..||+||+|||+|||++|++.+|
T Consensus 168 ~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f 247 (397)
T PRK04346 168 TLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPF 247 (397)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHH
Confidence 577888888774 4343455665 22222 45556799999999999983 36999999999999999999999
Q ss_pred HhcCCCcEEEEEeCCCCc--------cccCCCCC---------------------------------CCchhhhhhccCe
Q 015783 283 KMMNKEIKVVGVEPAERS--------VISGENAG---------------------------------YVPSILDVQLLDE 321 (400)
Q Consensus 283 k~~~~~~rvi~Vep~~~~--------~l~~g~~~---------------------------------~~~~~l~~~~~~~ 321 (400)
++ .+++|||||||.++. ++..+.++ ...+.+.....++
T Consensus 248 ~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~ 326 (397)
T PRK04346 248 ID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAE 326 (397)
T ss_pred hh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeE
Confidence 76 789999999999852 23222211 1112234455678
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 322 VIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 322 ~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
++.|+|+|+++++++|++.|||+++++|++|++++++++++. .++++||+++||+|+||++++.
T Consensus 327 ~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~Vvv~lsGrG~kd~~~~~ 390 (397)
T PRK04346 327 YVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVVNLSGRGDKDVFTVA 390 (397)
T ss_pred EEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeEEEEeCCCCccCHHHHH
Confidence 999999999999999999999999999999999999987653 4688999999999999998753
No 38
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2.8e-54 Score=446.33 Aligned_cols=275 Identities=21% Similarity=0.288 Sum_probs=247.1
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (400)
.++..+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+.+..+.++.. .+.|+++|+||||.++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999998754433 456999999999999999999
Q ss_pred HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHh
Q 015783 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (400)
Q Consensus 177 ~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~ 256 (400)
++|++|+||||.+++..|++.++.|||+|+.++.+ ++++.+.|.+++++. +++|++||+|+.++ .||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~--~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDS--YDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999999999999854 788999999988875 67899999999985 799999999999
Q ss_pred hhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------CCCchhh
Q 015783 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------GYVPSIL 314 (400)
Q Consensus 257 Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------~~~~~~l 314 (400)
|+.+.+|+||+|+|+||+++|++.++|+.++++|||||||++++++.. |.+ +..++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 996569999999999999999999999999999999999999987741 211 2234456
Q ss_pred hhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCC
Q 015783 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGE 379 (400)
Q Consensus 315 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~ 379 (400)
.++++|+++.|+|+|+.++++++++.+|++++|+||+++||++++.++...++++||+|+||++.
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNi 398 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANM 398 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCC
Confidence 67899999999999999999999999999999999999999999876555678999999999775
No 39
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=1.5e-54 Score=439.58 Aligned_cols=295 Identities=23% Similarity=0.305 Sum_probs=253.4
Q ss_pred hHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Q 015783 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (400)
Q Consensus 94 ~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (400)
+++++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .++|+++|+||||.++|+
T Consensus 15 a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~alA~ 90 (420)
T PRK08639 15 AAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGVAY 90 (420)
T ss_pred HHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHH
Confidence 5568889999999999999999889999999999999999999999999988533222 467999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE---EeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhH
Q 015783 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEII---LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (400)
Q Consensus 174 aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~---~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti 250 (400)
+|+.+|++|+||||+++++.|+..++.|||+|+ .++ .+++++++.|.+++++. +++|++||+|+.++ +||.|+
T Consensus 91 ~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g--~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~ti 166 (420)
T PRK08639 91 ACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVG--DTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQGTV 166 (420)
T ss_pred HHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeC--cCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchhHH
Confidence 999999999999999999999999999999744 333 34889999999998875 78999999999885 799999
Q ss_pred HHHHHhhhCCC--CCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC-----------------
Q 015783 251 GPEIWEDTLGC--VDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA----------------- 307 (400)
Q Consensus 251 ~~Ei~~Ql~~~--pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~----------------- 307 (400)
|.||++|+++. ||+||+|+|+||+++|++.++|+.++++|||||||++|+++.. |.+
T Consensus 167 g~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~ 246 (420)
T PRK08639 167 AVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVAR 246 (420)
T ss_pred HHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCC
Confidence 99999999655 9999999999999999999999999999999999999987642 221
Q ss_pred -CCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCh---h
Q 015783 308 -GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYI---P 383 (400)
Q Consensus 308 -~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~---~ 383 (400)
+..++.+..+.+|+++.|+|+|+.+++++|++++|+++||+||+++|+++++.+. .++++||+++||+ ..++ .
T Consensus 247 ~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv~v~sGg-n~d~~~~~ 323 (420)
T PRK08639 247 VGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVVCVISGG-NNDIERMP 323 (420)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEeCCC-CCCHHHHH
Confidence 1223445678899999999999999999999999999999999999998876543 3788999999984 4433 3
Q ss_pred HHhhHHHHHHhccccc
Q 015783 384 TVLFRSIYEEVQNMQQ 399 (400)
Q Consensus 384 ~~~~~~~~~~~~~~~~ 399 (400)
.++.+.+..+.|.++.
T Consensus 324 ~~~~~~l~~~~r~~~~ 339 (420)
T PRK08639 324 EIKERSLIYEGLKHYF 339 (420)
T ss_pred HHHHHHHHhcCCEEEE
Confidence 4567777777777654
No 40
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=9.1e-55 Score=428.00 Aligned_cols=288 Identities=23% Similarity=0.237 Sum_probs=252.6
Q ss_pred HHHhhccCCCcchHHHhhcccCCCCceecccccccCC-CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEE
Q 015783 82 EKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160 (400)
Q Consensus 82 ~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg-~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv 160 (400)
|| |.+++|.. ....+++++|+|||+++++|++.+| .+||+|+|++|||||||+|++.+++.++.++| .++|+
T Consensus 2 ~~-~~~~~~~~-~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~vv 74 (324)
T cd01563 2 WR-YRELLPVT-EDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG-----VKAVA 74 (324)
T ss_pred cc-chhhCCCC-CCCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcC-----CCEEE
Confidence 45 88999976 4457999999999999999998877 79999999999999999999999999999988 46899
Q ss_pred EeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCCh
Q 015783 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNM 240 (400)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~ 240 (400)
++|+||||.|+|++|+.+|++|+||||.++++.|+++|+.+||+|+.++.+ ++++.+.+.++++++ .+|+++|+|+
T Consensus 75 ~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~--~~~~~~~~n~ 150 (324)
T cd01563 75 CASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN--FDDALRLVRELAEEN--WIYLSNSLNP 150 (324)
T ss_pred EeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECCc--HHHHHHHHHHHHHhc--CeeccCCCCc
Confidence 999999999999999999999999999999999999999999999999864 678888888888774 7889999999
Q ss_pred HHHHHHHHhHHHHHHhhhCC-CCCEEEEecCCChhHHhHHHHHHhcC------CCcEEEEEeCCCCccccC----CCC--
Q 015783 241 ANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVISG----ENA-- 307 (400)
Q Consensus 241 ~~~~~g~~ti~~Ei~~Ql~~-~pD~vv~pvG~Gg~~aGi~~~~k~~~------~~~rvi~Vep~~~~~l~~----g~~-- 307 (400)
.++ .||.|++.||++|+++ .||+||+|+|+||+++|++.+|++.+ ++++||+|||.+++++.. |.+
T Consensus 151 ~~~-~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~ 229 (324)
T cd01563 151 YRL-EGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDI 229 (324)
T ss_pred cee-cchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCcc
Confidence 986 6999999999999964 69999999999999999999999864 579999999999875532 110
Q ss_pred -----------C---CCc--h----hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC-CC
Q 015783 308 -----------G---YVP--S----ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE-NS 366 (400)
Q Consensus 308 -----------~---~~~--~----~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-~~ 366 (400)
+ ..| + .+.++..++++.|+|+|+++++++|++++|++++|++|+++++++++.+++. .+
T Consensus 230 ~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~ 309 (324)
T cd01563 230 EPVENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDK 309 (324)
T ss_pred CcCCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCC
Confidence 0 001 1 2334566899999999999999999999999999999999999999887643 46
Q ss_pred CCeEEEEeCCCCCCC
Q 015783 367 GKLIAAIFPSFGERY 381 (400)
Q Consensus 367 ~~~vVvl~t~~G~k~ 381 (400)
+++||+|+||+|.|+
T Consensus 310 ~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 310 GERVVVVLTGHGLKD 324 (324)
T ss_pred CCcEEEEeCCCccCC
Confidence 789999999999874
No 41
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=5.9e-54 Score=420.40 Aligned_cols=283 Identities=21% Similarity=0.249 Sum_probs=245.1
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.+++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... ..+|+++|+||||.|+|
T Consensus 8 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 83 (317)
T TIGR02991 8 RAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALA 83 (317)
T ss_pred HHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHH
Confidence 45678899999999999999999889999999999999999999999999998764332 45799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||...++.|+.+|+.|||+|+.++.+ ++++.+.+.+++++. +++|++||+|+.++ +||+|+++
T Consensus 84 ~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~a~ 159 (317)
T TIGR02991 84 YAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRS--QDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGTLGL 159 (317)
T ss_pred HHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHHHHH
Confidence 999999999999999999999999999999999999964 778888888888775 78999999999985 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC--------------------C
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA--------------------G 308 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~--------------------~ 308 (400)
||++|+ +.+|+||+|+|+||+++|++++||++++++|||+|||++++++.. |.+ +
T Consensus 160 Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~ 238 (317)
T TIGR02991 160 EVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDN 238 (317)
T ss_pred HHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCC
Confidence 999999 468999999999999999999999999999999999998876642 211 1
Q ss_pred CCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhH
Q 015783 309 YVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFR 388 (400)
Q Consensus 309 ~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~ 388 (400)
..++.+..+.+|+++.|+|+|+++++++|++++|++++|++++++|++.+... ..+++||+|+||++. |...+.
T Consensus 239 ~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~---~~~~~vvvvltG~n~---~~~~~~ 312 (317)
T TIGR02991 239 RVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKI---KNPGPCAVIVSGRNI---DMDLHK 312 (317)
T ss_pred HHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCcc---ccCCcEEEEeCCCCC---CHHHHH
Confidence 23455567889999999999999999999999999999999999988874221 246789999999775 433444
Q ss_pred HH
Q 015783 389 SI 390 (400)
Q Consensus 389 ~~ 390 (400)
.+
T Consensus 313 ~~ 314 (317)
T TIGR02991 313 RI 314 (317)
T ss_pred HH
Confidence 43
No 42
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.6e-54 Score=437.60 Aligned_cols=291 Identities=22% Similarity=0.291 Sum_probs=254.2
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
++.+++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+.+. .+.|+++|+||||+|+|
T Consensus 12 ~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA 87 (403)
T PRK07334 12 AAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVA 87 (403)
T ss_pred HHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHH
Confidence 45678889999999999999999889999999999999999999999999998764432 35699999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||.++++.|+.+|+.+||+|+.++++ ++++++.+.+++++. +++|++||+|+.++ +||.|+|.
T Consensus 88 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~--~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t~~~ 163 (403)
T PRK07334 88 YHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGET--LDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGTVAL 163 (403)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHHHHH
Confidence 999999999999999999999999999999999999754 788999999988774 78999999999985 89999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----C----------------CCCCCch
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----E----------------NAGYVPS 312 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g----------------~~~~~~~ 312 (400)
||++|+ +.||+||+|+|+||+++|++.+|+++++++|||+|||++++++.. + .++..++
T Consensus 164 Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 242 (403)
T PRK07334 164 EMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTL 242 (403)
T ss_pred HHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHH
Confidence 999999 479999999999999999999999999999999999999987742 1 1234456
Q ss_pred hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCC--CCChhHHhhHHH
Q 015783 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFG--ERYIPTVLFRSI 390 (400)
Q Consensus 313 ~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G--~k~~~~~~~~~~ 390 (400)
.+.++.+|+++.|+|+|+++++++|++.+|++++|+||+++++++++.++ .++++||+++||+. .+++..+++.+|
T Consensus 243 ~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~~ggn~d~~~l~~il~~~l 320 (403)
T PRK07334 243 EIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVLSGGNIDTRLLANVLLRGL 320 (403)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999998876654 46789999999954 334444556666
Q ss_pred HHHh
Q 015783 391 YEEV 394 (400)
Q Consensus 391 ~~~~ 394 (400)
..+.
T Consensus 321 ~~~~ 324 (403)
T PRK07334 321 VRAG 324 (403)
T ss_pred HhCC
Confidence 5554
No 43
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3e-54 Score=423.76 Aligned_cols=285 Identities=22% Similarity=0.275 Sum_probs=247.5
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
++++.++..+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..++++|.. .+.|+++|+||||+|+|
T Consensus 10 ~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~---~~~vv~aSsGN~g~alA 86 (322)
T PRK06110 10 AAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPR---VRGVISATRGNHGQSVA 86 (322)
T ss_pred HHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCC---CceEEEECCCHHHHHHH
Confidence 456788999999999999999998999999999999999999999999999999887643 34699999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||.+.++.|+.+|+.+||+|+.++++ ++++++++.++++++ +++|+++| ++.++ .||.|+|+
T Consensus 87 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t~~~ 161 (322)
T PRK06110 87 FAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGED--FQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVATYAL 161 (322)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccchHHH
Confidence 999999999999999999999999999999999999754 788999999988875 78999998 56664 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC-----------CC---C--c-
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA-----------GY---V--P- 311 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~-----------~~---~--~- 311 (400)
||++|++ ++|+||+|+|+||+++|++.+|++.++++|||+|||++++++.. +.+ +. . +
T Consensus 162 Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~ 240 (322)
T PRK06110 162 ELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPE 240 (322)
T ss_pred HHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHH
Confidence 9999995 79999999999999999999999999999999999999987632 210 11 1 1
Q ss_pred -hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHH
Q 015783 312 -SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSI 390 (400)
Q Consensus 312 -~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~ 390 (400)
+.+.++.+|+++.|+|+|+++++++|++++|++++|++++++++++++.+. .++++||+|+|| |..+++ .+.++
T Consensus 241 ~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~--~~~~~Vv~i~tG-gn~d~~--~~~~~ 315 (322)
T PRK06110 241 ALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER--LAGKRVGLVLSG-GNIDRA--VFARV 315 (322)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh--hCCCcEEEEECC-CCCCHH--HHHHH
Confidence 233457899999999999999999999999999999999999999987654 367899999999 666554 45554
Q ss_pred H
Q 015783 391 Y 391 (400)
Q Consensus 391 ~ 391 (400)
+
T Consensus 316 ~ 316 (322)
T PRK06110 316 L 316 (322)
T ss_pred H
Confidence 4
No 44
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=3.8e-54 Score=444.52 Aligned_cols=295 Identities=23% Similarity=0.303 Sum_probs=259.1
Q ss_pred HHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHH
Q 015783 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (400)
Q Consensus 96 ~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (400)
.+++..+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+.+..+.+... .+.|+++|+||||.++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 37888899999999999999999999999999999999999999999988764322 46799999999999999999
Q ss_pred HHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHH
Q 015783 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (400)
Q Consensus 176 ~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~ 255 (400)
+.+|++|+||||++++..|++.++.+||+|+.++.+ +++++++|.+++++. +++|++||+|+.++ +||+|+|.||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~--~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDS--FDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 999999999999999999999999999999999854 889999999998874 78999999999985 79999999999
Q ss_pred hhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------CCCchh
Q 015783 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------GYVPSI 313 (400)
Q Consensus 256 ~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------~~~~~~ 313 (400)
+|+++.||+||+|+||||+++|++.++|..++++|||||||++++++.. |.+ +..++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~ 243 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFR 243 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHH
Confidence 9996569999999999999999999999999999999999999987742 221 223455
Q ss_pred hhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC--ChhHHhhHHHH
Q 015783 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGER--YIPTVLFRSIY 391 (400)
Q Consensus 314 l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k--~~~~~~~~~~~ 391 (400)
+.++++|+++.|+|+|+.++++++++++|++++|+||+++|+++++.++...++++||+|+||++.. .+..++.+.+.
T Consensus 244 ~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~sG~n~~~~~l~~~~~r~~~ 323 (504)
T PRK09224 244 LCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGANMNFDRLRYVAERAEL 323 (504)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6678999999999999999999999999999999999999999988776545689999999997754 33445666766
Q ss_pred HHhcccc
Q 015783 392 EEVQNMQ 398 (400)
Q Consensus 392 ~~~~~~~ 398 (400)
.+.|+++
T Consensus 324 ~~~re~~ 330 (504)
T PRK09224 324 GEQREAL 330 (504)
T ss_pred hcCCEEE
Confidence 6666654
No 45
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=6.3e-54 Score=419.99 Aligned_cols=282 Identities=22% Similarity=0.207 Sum_probs=239.5
Q ss_pred CCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEE
Q 015783 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLI 183 (400)
Q Consensus 104 ~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~ 183 (400)
+|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.++|. .+ .++|+++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 599999999999889999999999999999999999999999999884 12 4679999999999999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCC--C
Q 015783 184 VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--C 261 (400)
Q Consensus 184 Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~--~ 261 (400)
||||.++++.|+++|+.+||+|+.++++. ++++.+.+.+++++.++++|+++|+|+.++ .||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYVHPFDDPLIW-EGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCch-HHHHHHHHHHHHhccCCcEEeCCCCCchhh-ccccHHHHHHHHHccccCC
Confidence 99999999999999999999999998652 556666777777665478999999999885 7899999999999976 6
Q ss_pred CCEEEEecCCChhHHhHHHHHHhcC-CCcEEEEEeCCCCccccC----CCC-----------C----CC---chhhhhhc
Q 015783 262 VDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVISG----ENA-----------G----YV---PSILDVQL 318 (400)
Q Consensus 262 pD~vv~pvG~Gg~~aGi~~~~k~~~-~~~rvi~Vep~~~~~l~~----g~~-----------~----~~---~~~l~~~~ 318 (400)
||+||+|+|+||+++|++.+|++.+ ++++||+|||++|+++.+ +.+ + .. .+...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 899999999999987642 111 0 11 12334456
Q ss_pred cCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHh-----cCC-CCCCCeEEEEeCCCCCCChhHHhhHHHH
Q 015783 319 LDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLA-----RRP-ENSGKLIAAIFPSFGERYIPTVLFRSIY 391 (400)
Q Consensus 319 ~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~-----~~~-~~~~~~vVvl~t~~G~k~~~~~~~~~~~ 391 (400)
.|+++.|+|+|+++++++|++++||++||+||++++++++.. +++ ..++++||+++||+....++. +.+|+
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~--~~~~~ 313 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQ--LKEYK 313 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHH--HHHHH
Confidence 789999999999999999999999999999999999998532 211 257899999999976544433 44444
No 46
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=2.6e-54 Score=433.47 Aligned_cols=282 Identities=24% Similarity=0.346 Sum_probs=246.8
Q ss_pred CCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 015783 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (400)
Q Consensus 105 TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~V 184 (400)
|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.++|. .++|+++|+||||.++|++|+.+|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999999999999999999999999999999999999998886 45799999999999999999999999999
Q ss_pred EeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCE
Q 015783 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264 (400)
Q Consensus 185 vvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~ 264 (400)
|||+.+++.|+++++.+||+|+.++.+ ++++.+.|.+++++. +++|++||+|+.++ .||.|+|+||++|++ .||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGDD--YDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhCC-CCCE
Confidence 999999999999999999999999754 789999999998875 78999999999885 899999999999994 7999
Q ss_pred EEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------CCCCchhhhhhccCeE
Q 015783 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----EN------------------AGYVPSILDVQLLDEV 322 (400)
Q Consensus 265 vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~------------------~~~~~~~l~~~~~~~~ 322 (400)
||+|+|+||+++|++.++|+.+|++|||||||++|+++.. +. |+..++.+..+.+|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 9999999999999999999999999999999999987641 21 1223444567889999
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh---HHhhHHHHHHhcccc
Q 015783 323 IKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP---TVLFRSIYEEVQNMQ 398 (400)
Q Consensus 323 ~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~---~~~~~~~~~~~~~~~ 398 (400)
+.|+|+|+.+++++|++++|++++|+++++++++++.... .++++||+++|| |..+.| .++..++..+.+.+|
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~--~~~~~vv~i~sG-Gn~d~d~l~~vi~~gl~~~gr~~~ 307 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD--VKGKKIAVVLSG-GNIDLNLLNKIIEKGLVKSGRKVR 307 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc--cCCCeEEEEeCC-CCCCHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999999999999998864332 367899999998 444333 346666666666443
No 47
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=4.9e-54 Score=422.17 Aligned_cols=278 Identities=19% Similarity=0.267 Sum_probs=243.5
Q ss_pred hHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Q 015783 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (400)
Q Consensus 94 ~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (400)
+++++...+++|||++++++++..|.+||+|+|++|||||||||++.+++..+.+++. .++|+++|+||||.|+|+
T Consensus 14 a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 89 (321)
T PRK07048 14 AAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQAIAL 89 (321)
T ss_pred HHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHHHHH
Confidence 4568888999999999999998888999999999999999999999999998875543 467999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 174 aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
+|+.+|++|+||||..+++.|+.+|+.+||+|+.+++. ++++.+.+.+++++. +++|++||+|+.++ .||+|+++|
T Consensus 90 ~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~-~g~~t~~~E 165 (321)
T PRK07048 90 SARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHVI-AGQGTAAKE 165 (321)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcchh-hccchHHHH
Confidence 99999999999999999999999999999999999864 567778888888775 78999999999885 799999999
Q ss_pred HHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCcccc----CCC------C------------CCCc
Q 015783 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----GEN------A------------GYVP 311 (400)
Q Consensus 254 i~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~----~g~------~------------~~~~ 311 (400)
|++|++ +||+||+|+|+||+++|++.++|+.+++++||+|||++++++. .|. + +...
T Consensus 166 I~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~ 244 (321)
T PRK07048 166 LFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYT 244 (321)
T ss_pred HHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHH
Confidence 999995 7999999999999999999999999999999999999987542 121 1 1122
Q ss_pred hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh
Q 015783 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP 383 (400)
Q Consensus 312 ~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~ 383 (400)
+.+..+.+|+++.|+|+|+++++++|++++||++||++++++++++++.++ .++++||+|+|| |..+++
T Consensus 245 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i~tG-Gn~~~~ 313 (321)
T PRK07048 245 FPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVIISG-GNVDLA 313 (321)
T ss_pred HHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEEeCC-CCCCHH
Confidence 344567899999999999999999999999999999999999999987654 467899999997 555443
No 48
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=4e-54 Score=439.35 Aligned_cols=290 Identities=20% Similarity=0.240 Sum_probs=251.3
Q ss_pred chHHHHHhhccCCCcchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCc
Q 015783 78 TREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157 (400)
Q Consensus 78 ~~~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~ 157 (400)
..++|| |++++|..+ ..+++++|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.++++.| .+
T Consensus 43 ~~~~wr-y~~~lp~~~--~~v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g-----~~ 113 (442)
T PRK05638 43 DPGVWR-YKELLPQVK--KIISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYA-----AN 113 (442)
T ss_pred CCChhh-hhhhCCCcC--CccccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcC-----CC
Confidence 468999 999999865 4589999999999984 77778889999999999999999999999999999888 47
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (400)
+|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++++.+.+++++. ++|+++++
T Consensus 114 ~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-~~~~~~~~ 190 (442)
T PRK05638 114 GFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGES--VDEAIEYAEELARLN-GLYNVTPE 190 (442)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECCC--HHHHHHHHHHHHHhC-CeEecCCC
Confidence 899999999999999999999999999999999999999999999999999864 788999998887764 78999999
Q ss_pred CChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCC------CcEEEEEeCCCCccccC----CC-
Q 015783 238 DNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVISG----EN- 306 (400)
Q Consensus 238 ~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~------~~rvi~Vep~~~~~l~~----g~- 306 (400)
+||.++ +||+|+++||++|++ ||+||+|+|+||+++|++++|+++.+ .+|||+|||++|+++.. +.
T Consensus 191 ~np~~~-eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~ 267 (442)
T PRK05638 191 YNIIGL-EGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKT 267 (442)
T ss_pred CChhHh-hhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCC
Confidence 999985 799999999999995 99999999999999999999999754 47999999999977642 11
Q ss_pred --C-----C---CCc------hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC-CCCCe
Q 015783 307 --A-----G---YVP------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE-NSGKL 369 (400)
Q Consensus 307 --~-----~---~~~------~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-~~~~~ 369 (400)
+ + ..| ....++..+.++.|+|+++.++.+.++ ++||+++|+||+++|+++++.+++. .++++
T Consensus 268 ~~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~ 346 (442)
T PRK05638 268 KCNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDK 346 (442)
T ss_pred CCCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCe
Confidence 0 0 001 112334456788999999888877776 6899999999999999999988764 56889
Q ss_pred EEEEeCCCCCCChh
Q 015783 370 IAAIFPSFGERYIP 383 (400)
Q Consensus 370 vVvl~t~~G~k~~~ 383 (400)
||+++||+|.|+..
T Consensus 347 Vv~i~tG~g~k~~~ 360 (442)
T PRK05638 347 VVLVVTGSGLKGYG 360 (442)
T ss_pred EEEEeCCCCCCCCC
Confidence 99999999999853
No 49
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=9e-54 Score=432.94 Aligned_cols=309 Identities=19% Similarity=0.175 Sum_probs=257.9
Q ss_pred HHHhhccCCCcchHHHhhcccCCCCceecccccccCC--------CeEEEEeCCCCC-CCcchhhhHHHHHHH-----HH
Q 015783 82 EKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AE 147 (400)
Q Consensus 82 ~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg--------~~i~~K~E~~np-tGSfK~Rga~~~~~~-----a~ 147 (400)
++.|..+||........+.++++|||++++.+++.+| .+||+|+|++|| |||||+||+.+++.. ++
T Consensus 53 i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~ 132 (441)
T PRK02991 53 LKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLAL 132 (441)
T ss_pred HHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHH
Confidence 3345555665544446677899999999999988775 799999999999 999999999998875 55
Q ss_pred HcCCCCCCC----------------cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 148 ESGDITPGK----------------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 148 ~~G~~~~g~----------------~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
+.|.+.++. ++|+++|+||||.|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.++++
T Consensus 133 ~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~ 212 (441)
T PRK02991 133 EAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGD 212 (441)
T ss_pred HhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC
Confidence 778765543 4799999999999999999999999999999999999999999999999999865
Q ss_pred CChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCC--------CCCEEEEecCCChhHHhHHHHHH
Q 015783 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLK 283 (400)
Q Consensus 212 ~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~--------~pD~vv~pvG~Gg~~aGi~~~~k 283 (400)
++++.+.+.++++++++++|+++++++.. ++||+|+|+||++|+++ .||+||+|+|+||+++|++.+||
T Consensus 213 --~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk 289 (441)
T PRK02991 213 --YGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLK 289 (441)
T ss_pred --HHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHH
Confidence 78899999999887667888999877776 58999999999999952 36799999999999999999999
Q ss_pred hc-CCCcEEEEEeCCCCccccC----CC------------------------CCCCchhhhhhccCeEEEeCHHHHHHHH
Q 015783 284 MM-NKEIKVVGVEPAERSVISG----EN------------------------AGYVPSILDVQLLDEVIKVTNDEAVNMA 334 (400)
Q Consensus 284 ~~-~~~~rvi~Vep~~~~~l~~----g~------------------------~~~~~~~l~~~~~~~~~~V~d~e~~~a~ 334 (400)
+. .++++||+|||++++++.. |. ++..++.+.++.+|+++.|+|+|+++++
T Consensus 290 ~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~ 369 (441)
T PRK02991 290 LAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLL 369 (441)
T ss_pred HhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHH
Confidence 97 6889999999999976531 21 1122345566889999999999999999
Q ss_pred HHHHHHcCCeeehhHHHHHHHHHHHhcCCC-------C---CCCeEEEEeCCCCCCChhHHhhHHHHHHhc
Q 015783 335 RRLALEEGLLVGISSGAAAAAAISLARRPE-------N---SGKLIAAIFPSFGERYIPTVLFRSIYEEVQ 395 (400)
Q Consensus 335 ~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-------~---~~~~vVvl~t~~G~k~~~~~~~~~~~~~~~ 395 (400)
++|++++|+++||+||+++|++++++++.. . .+++||++.|++.....+ ..++|....+
T Consensus 370 ~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~--~~~~~~~~~~ 438 (441)
T PRK02991 370 GLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEE--EMEQYLAKGR 438 (441)
T ss_pred HHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHH--HHHHHHHhhh
Confidence 999999999999999999999987665321 1 578999999998777664 3556655544
No 50
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=100.00 E-value=1.9e-54 Score=405.50 Aligned_cols=343 Identities=20% Similarity=0.222 Sum_probs=294.6
Q ss_pred ccccccccccc------cccccCCCccCCCCCcccccccchHHHHHhhc---cCCCcchHHHhhccc-CCCCceeccccc
Q 015783 45 GALATRRRILP------IVASAKAGAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLI-GRTPMVYLNKVT 114 (400)
Q Consensus 45 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~lp~~~~~~~v~~~~-~~TPL~~~~~l~ 114 (400)
..|+.||++.. ++++-+|.+.++..+..+...+|..+++|+.+ |+.+++....++..| +||||+++++|+
T Consensus 9 ~eiPk~WYNIlpDLPepLppP~dP~t~~~~~~e~L~~ifp~~lieqE~s~eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~LE 88 (432)
T COG1350 9 DEIPKRWYNILPDLPEPLPPPLDPETGEPIRPELLKKIFPKKLIEQEFSGERYIKIPEEVREAYLQIGRPTPLIRAKNLE 88 (432)
T ss_pred ccccHHHHhcccCCCCCCCCCCCccccCCCCHHHHHHhccHHHHHHHhhhhhcccCcHHHHHHHHHhCCCCchhhhhhHH
Confidence 34677888773 33455666666666667788899999999776 889999999999999 589999999999
Q ss_pred ccCC--CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC---C
Q 015783 115 EGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA---S 189 (400)
Q Consensus 115 ~~lg--~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~---~ 189 (400)
+.+| ++||+|.|+..||||||+|.|..++.+++..|. ++.+.++++|+||.|++++|+.+|++|+|||.. .
T Consensus 89 ~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy~ 164 (432)
T COG1350 89 EALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSYY 164 (432)
T ss_pred HHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhhh
Confidence 9998 799999999999999999999999999999997 788888999999999999999999999999977 4
Q ss_pred CcHHHHHHHHHcCCEEEEeCCCCChhh----------------HHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 190 TNLERRILLRAFGAEIILTDPEKGLRG----------------ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 190 ~~~~~~~~l~~~GA~V~~~~~~~~~~~----------------a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
+++.++.+|+.|||+|+.++++.+.-+ |+++|.|.+.++++..|..++..+++ ..||++||.|
T Consensus 165 qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhv-llhQTViGlE 243 (432)
T COG1350 165 QKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHV-LLHQTVIGLE 243 (432)
T ss_pred cchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHH-HHHHHHHhHH
Confidence 689999999999999999988754222 89999999998888889888877776 4699999999
Q ss_pred HHhhh---CCCCCEEEEecCCChhHHhHH-HHHHhc--C-CCcEEEEEeCCCCccccCCCC-------------------
Q 015783 254 IWEDT---LGCVDIFVAAIGTGGTITGTG-RFLKMM--N-KEIKVVGVEPAERSVISGENA------------------- 307 (400)
Q Consensus 254 i~~Ql---~~~pD~vv~pvG~Gg~~aGi~-~~~k~~--~-~~~rvi~Vep~~~~~l~~g~~------------------- 307 (400)
..+|+ +..||++|.|||||||++|+. .++++. + ...++|+|||..||.|++|.+
T Consensus 244 akkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyTl 323 (432)
T COG1350 244 AKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYTL 323 (432)
T ss_pred HHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhcc
Confidence 97776 467999999999999999995 455443 2 238999999999999988653
Q ss_pred --CCCc-----------------hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCC
Q 015783 308 --GYVP-----------------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGK 368 (400)
Q Consensus 308 --~~~~-----------------~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~ 368 (400)
.++| ..+..+.+.+++.++++|++++++.|++.|||++.|+|+||+.++++.+.+.+..++
T Consensus 324 Ghd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~ge 403 (432)
T COG1350 324 GHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGE 403 (432)
T ss_pred CCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccCc
Confidence 1112 224456777899999999999999999999999999999999999999988878889
Q ss_pred eEEEEeCCCCCCChhHHhhHHHHH
Q 015783 369 LIAAIFPSFGERYIPTVLFRSIYE 392 (400)
Q Consensus 369 ~vVvl~t~~G~k~~~~~~~~~~~~ 392 (400)
..|++++-+||+.+|...|++++.
T Consensus 404 ekvI~fnlSGHGllDL~~Y~~yl~ 427 (432)
T COG1350 404 EKVILFNLSGHGLLDLSAYDKYLE 427 (432)
T ss_pred eeEEEEeccCccccchhhHHHHhh
Confidence 999999999999999999999874
No 51
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.5e-53 Score=426.31 Aligned_cols=316 Identities=22% Similarity=0.258 Sum_probs=260.0
Q ss_pred CccCCCCCcccccccchHHHHHhhccCCCcch----HHHhhcccC-CCCceecccccccC------CCeEEEEeCCCCCC
Q 015783 63 GAAASSSSSSLYATSTREIEKEEGNDFHGVNI----AEDVTQLIG-RTPMVYLNKVTEGC------VGNVAAKLESMEPC 131 (400)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~----~~~v~~~~~-~TPL~~~~~l~~~l------g~~i~~K~E~~npt 131 (400)
+.+...+.|+.+.....+|.+.|.+...+++. ...+..++| +|||+++++|++.+ |++||+|+|++|||
T Consensus 20 g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnpt 99 (410)
T PLN02618 20 GKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHT 99 (410)
T ss_pred cCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCc
Confidence 45889999999999999999999997776543 445667785 89999999999977 48999999999999
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHcCCEEEEe
Q 015783 132 RSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILT 208 (400)
Q Consensus 132 GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~---~~~~~~~l~~~GA~V~~~ 208 (400)
||||+|++..++..+++.|+ ++.|+++|+||||+|+|++|+.+|++|+||||+.. +..++.+|+.+||+|+.+
T Consensus 100 GS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v 175 (410)
T PLN02618 100 GAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPV 175 (410)
T ss_pred cchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEE
Confidence 99999999999999999885 45666778999999999999999999999999953 356777999999999999
Q ss_pred CC-CCChhhHHHHHHH-HHHhCCCceee-------CCCCChHHHHHHHHhHHHHHHhhh----CCCCCEEEEecCCChhH
Q 015783 209 DP-EKGLRGALDKAEE-IVLNTPNAYMF-------QQFDNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTI 275 (400)
Q Consensus 209 ~~-~~~~~~a~~~a~~-~a~~~~~~~~~-------~~~~~~~~~~~g~~ti~~Ei~~Ql----~~~pD~vv~pvG~Gg~~ 275 (400)
+. ..++++++.++.+ ++++..+.+|+ ++| +..+..|++|+|.||.+|+ +..||+||+|||+|||+
T Consensus 176 ~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~--~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~ 253 (410)
T PLN02618 176 HSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY--PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNA 253 (410)
T ss_pred eCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC--HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHH
Confidence 64 3457888866654 55553456666 333 3344579999999998886 34699999999999999
Q ss_pred HhHHHHHHhcCCCcEEEEEeCCCC--------ccccCCCCC-------------------------------CCc--hhh
Q 015783 276 TGTGRFLKMMNKEIKVVGVEPAER--------SVISGENAG-------------------------------YVP--SIL 314 (400)
Q Consensus 276 aGi~~~~k~~~~~~rvi~Vep~~~--------~~l~~g~~~-------------------------------~~~--~~l 314 (400)
+|++.+|++ .+++|||||||.++ +.+..+.++ .-| ..+
T Consensus 254 ~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l 332 (410)
T PLN02618 254 MGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFL 332 (410)
T ss_pred HHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHH
Confidence 999999975 68999999999997 233333221 001 112
Q ss_pred hhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 315 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
.....++++.|+|+|+++++++|++.|||+++++|+|+++++++++++. .+++.||++++|+|+||++++.
T Consensus 333 ~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l-~~~~~iVv~lsgrG~Kd~~~v~ 403 (410)
T PLN02618 333 KDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTL-PDGTKVVVNCSGRGDKDVNTAI 403 (410)
T ss_pred HhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhc-CCCCEEEEEeCCCCcCCHHHHH
Confidence 2346789999999999999999999999999999999999999999763 4688999999999999999764
No 52
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-54 Score=420.03 Aligned_cols=277 Identities=22% Similarity=0.285 Sum_probs=244.4
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
..++++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+.+..+.+... .+.|+++|+||||+|+|
T Consensus 9 ~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA 84 (317)
T PRK06815 9 EAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVA 84 (317)
T ss_pred HHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHH
Confidence 45668888999999999999999889999999999999999999999999987543322 45699999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||.++++.|+.+|+.+||+|+.++++ ++++...+.+++++. +.+|+++|+|+.++ .||+|+++
T Consensus 85 ~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~a~ 160 (317)
T PRK06815 85 LAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGTIGM 160 (317)
T ss_pred HHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhHHHH
Confidence 999999999999999999999999999999999999875 677888888887774 78899999999875 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC-------------------CC
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA-------------------GY 309 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~-------------------~~ 309 (400)
||++|++ .||+||+|+|+||+++|++.+|++++++++||||||++++++.. +.+ +.
T Consensus 161 Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~ 239 (317)
T PRK06815 161 ELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGA 239 (317)
T ss_pred HHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccH
Confidence 9999995 69999999999999999999999999999999999999987642 110 11
Q ss_pred CchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCC
Q 015783 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGER 380 (400)
Q Consensus 310 ~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k 380 (400)
.++.+..+++|+++.|+|+|+++++++|++++||++||++|+++++++++.++ .++++||+|+||++.+
T Consensus 240 ~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i~tG~~~~ 308 (317)
T PRK06815 240 ITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVVLCGKNIV 308 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEEECCCCCC
Confidence 12234567889999999999999999999999999999999999999998765 3678999999998875
No 53
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=5.3e-54 Score=418.74 Aligned_cols=276 Identities=24% Similarity=0.333 Sum_probs=248.2
Q ss_pred cchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHH
Q 015783 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGI 171 (400)
Q Consensus 92 ~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~Al 171 (400)
.+++.++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++++.|. ..+|+++|+||||+|+
T Consensus 5 ~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~al 80 (304)
T cd01562 5 LAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGV 80 (304)
T ss_pred HHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHH
Confidence 356778999999999999999999889999999999999999999999999999988773 4579999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHH
Q 015783 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTG 251 (400)
Q Consensus 172 A~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~ 251 (400)
|++|+.+|++|+||||.++++.|+++|+.+||+|+.++++ ++++++.+.+++++. +++|+++|+|+.++ .||.+++
T Consensus 81 A~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~-~g~~~~~ 156 (304)
T cd01562 81 AYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVI-AGQGTIG 156 (304)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchh-ccHHHHH
Confidence 9999999999999999999999999999999999999975 788999999998885 78999999999875 7999999
Q ss_pred HHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CC------------------CCC
Q 015783 252 PEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----EN------------------AGY 309 (400)
Q Consensus 252 ~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~------------------~~~ 309 (400)
+||++|++ .||+||+|+|+||+++|++.+|++.++++|||+|||.+++++.. +. +..
T Consensus 157 ~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 235 (304)
T cd01562 157 LEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGE 235 (304)
T ss_pred HHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchH
Confidence 99999996 49999999999999999999999999999999999999876632 11 111
Q ss_pred CchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCC
Q 015783 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFG 378 (400)
Q Consensus 310 ~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G 378 (400)
.++.+..+.+++++.|+|+|+++++++|+++|||+++|+||+++++++++.++. ++++||+++||+.
T Consensus 236 ~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~i~tGG~ 302 (304)
T cd01562 236 LTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVVVLSGGN 302 (304)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEEEecCCC
Confidence 234456678999999999999999999999999999999999999999988764 6889999999975
No 54
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=3.9e-53 Score=416.49 Aligned_cols=273 Identities=23% Similarity=0.314 Sum_probs=239.5
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.++++++.++++|||++++.+ +||+|+|++|||||||+|++.+++..+.+.|. .+.|+++|+||||.|+|
T Consensus 28 ~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~alA 97 (349)
T PRK08813 28 AAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQGVA 97 (349)
T ss_pred HHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHHHHH
Confidence 456789999999999998765 49999999999999999999999999999986 45699999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||.++++.|+.+|+.|||+|+.++++ ++++++.+.+++++. +++|+++|+|+.++ +||+|+|+
T Consensus 98 ~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~--~~~a~~~a~~la~~~-g~~~v~~~~np~~i-~G~~Tig~ 173 (349)
T PRK08813 98 WSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNS--YDEAYAFARELADQN-GYRFLSAFDDPDVI-AGQGTVGI 173 (349)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCccCChHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999764 889999999998875 78999999999985 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC---C------------------CCCCCc
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---E------------------NAGYVP 311 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~---g------------------~~~~~~ 311 (400)
||++|. ||+||+|+|+||+++|++.+||+ +.+|||||||++++++.. + .++..+
T Consensus 174 EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~ 248 (349)
T PRK08813 174 ELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLT 248 (349)
T ss_pred HHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhH
Confidence 999874 89999999999999999999996 469999999999876521 1 123345
Q ss_pred hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHHHH
Q 015783 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRSIY 391 (400)
Q Consensus 312 ~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~~~ 391 (400)
+.+..+.+|+++.|+|+|+.+++++|++++|+++||+||+++|+++++ .+++||+|+||+.. |...+..++
T Consensus 249 ~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~vlsGgN~---d~~~~~~~~ 319 (349)
T PRK08813 249 RRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCAVVSGGNI---DATVLATLL 319 (349)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEEEECCCCC---CHHHHHHHH
Confidence 566778899999999999999999999999999999999999998752 45789999999664 444555665
Q ss_pred HH
Q 015783 392 EE 393 (400)
Q Consensus 392 ~~ 393 (400)
..
T Consensus 320 ~~ 321 (349)
T PRK08813 320 SE 321 (349)
T ss_pred Hh
Confidence 54
No 55
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=3.2e-53 Score=417.60 Aligned_cols=266 Identities=22% Similarity=0.228 Sum_probs=226.5
Q ss_pred hccCCCcchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCC
Q 015783 86 GNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTG 165 (400)
Q Consensus 86 ~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assG 165 (400)
++++|... ..+++++|+|||++.+ +||+|+|++|||||||||++.+++..+++.| .++|+++|+|
T Consensus 42 ~~~lp~~~--~~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g-----~~~vv~aSsG 106 (338)
T PRK06450 42 RKNFPYIK--HFISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKG-----IKQISEDSSG 106 (338)
T ss_pred HhhCCCCc--CCCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcC-----CCEEEEECCc
Confidence 36788754 3799999999999865 6999999999999999999999999999988 4689999999
Q ss_pred hHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHH
Q 015783 166 NTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKI 245 (400)
Q Consensus 166 N~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 245 (400)
|+|.|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++.+ .+++ .+.+|++++.||.++ +
T Consensus 107 N~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~----~a~~-~g~~~~~~~~np~~i-e 178 (338)
T PRK06450 107 NAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAK----AAEN-SGYYYASHVLQPQFR-D 178 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHH----HHHh-cCeEeccCCCCccHH-H
Confidence 9999999999999999999999999999999999999999999865 444333 3444 367888899999985 7
Q ss_pred HHHhHHHHHHhhhCC-CCCEEEEecCCChhHHhHHHHHHhcCC------CcEEEEEeCCCCccccC----CC------CC
Q 015783 246 HFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVISG----EN------AG 308 (400)
Q Consensus 246 g~~ti~~Ei~~Ql~~-~pD~vv~pvG~Gg~~aGi~~~~k~~~~------~~rvi~Vep~~~~~l~~----g~------~~ 308 (400)
||+|+++||++|+++ .||+||+|+|+|++++|++++|+++.+ .+|||+|||++|+++.. +. +.
T Consensus 179 G~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~ 258 (338)
T PRK06450 179 GIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVT 258 (338)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCC
Confidence 999999999999975 599999999999999999999998753 48999999999977652 11 10
Q ss_pred --------CCch------hhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 015783 309 --------YVPS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIF 374 (400)
Q Consensus 309 --------~~~~------~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~ 374 (400)
..|. ...++. +.++.|+|+|+++++++|++ +||+++|+||+++|++.++ ++++||+++
T Consensus 259 tia~~l~~~~p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vl 330 (338)
T PRK06450 259 SIADALVSTRPFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVL 330 (338)
T ss_pred cceeeeecCCCCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEe
Confidence 0111 112343 68999999999999999986 7999999999999999875 347899999
Q ss_pred CCCCCCCh
Q 015783 375 PSFGERYI 382 (400)
Q Consensus 375 t~~G~k~~ 382 (400)
||+|.|.+
T Consensus 331 tG~glK~~ 338 (338)
T PRK06450 331 TGSGLKVL 338 (338)
T ss_pred CCCCccCC
Confidence 99999864
No 56
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=6.9e-53 Score=411.75 Aligned_cols=271 Identities=26% Similarity=0.337 Sum_probs=237.3
Q ss_pred chHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHH
Q 015783 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (400)
Q Consensus 93 ~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (400)
.+++++...+++|||++++++... |.+||+|+|++|||||||+|++.+++..+.+ + .++|+++|+||||+|+|
T Consensus 12 ~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~a~A 84 (310)
T PRK08246 12 AAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGLAVA 84 (310)
T ss_pred HHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHHHHH
Confidence 356688899999999999999876 7899999999999999999999999988766 3 46799999999999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~ 252 (400)
++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++++.+.+++++. +++|++||+|+.++ .||+|+|+
T Consensus 85 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i-~g~~t~~~ 160 (310)
T PRK08246 85 YAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE--YADALEAAQAFAAET-GALLCHAYDQPEVL-AGAGTLGL 160 (310)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeCCCCCChhhh-cchHHHHH
Confidence 999999999999999999999999999999999999864 678888888888775 78999999999985 79999999
Q ss_pred HHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------CCC
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------GYV 310 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------~~~ 310 (400)
||++|+ +.||+||+|+|+||+++|++.+|+. .+|||+|||++++++.. |.+ +..
T Consensus 161 Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~ 236 (310)
T PRK08246 161 EIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEI 236 (310)
T ss_pred HHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHH
Confidence 999999 4799999999999999999999965 48999999999987642 221 112
Q ss_pred chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCC
Q 015783 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGE 379 (400)
Q Consensus 311 ~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~ 379 (400)
++.+.++.+|+++.|+|+|+++++++|++.+||+++|++|++++++++.... ..++++||+|+||++.
T Consensus 237 ~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~-~~~~~~vv~i~~g~n~ 304 (310)
T PRK08246 237 AFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYV-PAPGERVAVVLCGANT 304 (310)
T ss_pred HHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCcc-ccCCCeEEEEECCCCC
Confidence 4456778899999999999999999999999999999999999888654432 2467899999999653
No 57
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=9.6e-53 Score=412.77 Aligned_cols=269 Identities=22% Similarity=0.284 Sum_probs=235.6
Q ss_pred hcccCCCCceecccccccCC-CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHH
Q 015783 99 TQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177 (400)
Q Consensus 99 ~~~~~~TPL~~~~~l~~~lg-~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~ 177 (400)
...+|+|||+++++|++.+| .+||+|+|++|||||||+|++.+++.+++++| .++|+++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g-----~~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLG-----YSGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcC-----CCEEEEeCCcHHHHHHHHHHHH
Confidence 34688999999999999998 69999999999999999999999999999998 4789999999999999999999
Q ss_pred cCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCC-Ch-HHHHHHHHhHHHHHH
Q 015783 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD-NM-ANLKIHFDSTGPEIW 255 (400)
Q Consensus 178 ~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~-~~-~~~~~g~~ti~~Ei~ 255 (400)
+|++|+||||...+..|+++|+.+||+|+.++++ ++++++.+.+++++. ++|+++++. |+ .+ ..||.|+++||+
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~-~~G~~t~a~Ei~ 160 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVD-IEAYSAIAYEIY 160 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchH-hhhHHHHHHHHH
Confidence 9999999999999999999999999999999875 678889999988774 788888886 66 35 479999999999
Q ss_pred hhhCCCCCEEEEecCCChhHHhHHHHHHhc------CCCcEEEEEeCCCCccccC----CCC-------CCC-------c
Q 015783 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPAERSVISG----ENA-------GYV-------P 311 (400)
Q Consensus 256 ~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~------~~~~rvi~Vep~~~~~l~~----g~~-------~~~-------~ 311 (400)
+|++..||+||+|+|+||+++|++.+|++. ++.++||+|||.+++++.. +.. ..+ |
T Consensus 161 ~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~ 240 (319)
T PRK06381 161 EALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEP 240 (319)
T ss_pred HHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCC
Confidence 999767999999999999999999999998 7889999999999865532 111 000 1
Q ss_pred ------------hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 015783 312 ------------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSF 377 (400)
Q Consensus 312 ------------~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~ 377 (400)
+.+..+..++.+.|+|+|+++++++|+++|||+++|++|+++++++++.+++.. +++||+++||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~tGg 317 (319)
T PRK06381 241 LVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVITGR 317 (319)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEecCC
Confidence 112345566899999999999999999999999999999999999999887543 48999999984
No 58
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=9.1e-52 Score=434.42 Aligned_cols=319 Identities=19% Similarity=0.210 Sum_probs=260.5
Q ss_pred CccCCCCCcccccccchHHHHHhhccCCCcchHHH----hhcccC-CCCceeccccccc----CC--CeEEEEeCCCCCC
Q 015783 63 GAAASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLIG-RTPMVYLNKVTEG----CV--GNVAAKLESMEPC 131 (400)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~----v~~~~~-~TPL~~~~~l~~~----lg--~~i~~K~E~~npt 131 (400)
+.+...+.|+...+...+|.+.|.+...+++.... ...++| +|||+++++|++. +| ++||+|+|++|||
T Consensus 280 g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpT 359 (695)
T PRK13802 280 GQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHT 359 (695)
T ss_pred CCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCc
Confidence 34889999999999999999999998777654433 455677 9999999998753 44 7999999999999
Q ss_pred CcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---CcHHHHHHHHHcCCEEEEe
Q 015783 132 RSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLERRILLRAFGAEIILT 208 (400)
Q Consensus 132 GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~---~~~~~~~~l~~~GA~V~~~ 208 (400)
||||+|++.+++..+++.|+ .++|+++|+||||+|+|++|+++|++|+||||+. .+..|+.+|+.+||+|+.+
T Consensus 360 GS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v 435 (695)
T PRK13802 360 GAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEV 435 (695)
T ss_pred CCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEE
Confidence 99999999999999999997 5689999999999999999999999999999995 3678999999999999999
Q ss_pred CCC-CChhhHHHHHHH-HHHhCCCc-eeeCCCCCh----HHHHHHHHhHHHHHHhhhCC-----CCCEEEEecCCChhHH
Q 015783 209 DPE-KGLRGALDKAEE-IVLNTPNA-YMFQQFDNM----ANLKIHFDSTGPEIWEDTLG-----CVDIFVAAIGTGGTIT 276 (400)
Q Consensus 209 ~~~-~~~~~a~~~a~~-~a~~~~~~-~~~~~~~~~----~~~~~g~~ti~~Ei~~Ql~~-----~pD~vv~pvG~Gg~~a 276 (400)
+.. .+++++++++.+ ++++.++. |+++++.|+ .++..||+|+|.||++|+.. .||+||+|||+|||++
T Consensus 436 ~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~ 515 (695)
T PRK13802 436 TLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAI 515 (695)
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHH
Confidence 843 357788877755 45443334 556676554 44568999999999999942 6999999999999999
Q ss_pred hHHHHHHhcCCCcEEEEEeCCCCccccC----------CCCCC-------Cc------------------------hhhh
Q 015783 277 GTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGY-------VP------------------------SILD 315 (400)
Q Consensus 277 Gi~~~~k~~~~~~rvi~Vep~~~~~l~~----------g~~~~-------~~------------------------~~l~ 315 (400)
|++.+|++ .+++|||||||.++....+ |.++. .+ ..-.
T Consensus 516 Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~ 594 (695)
T PRK13802 516 GVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAW 594 (695)
T ss_pred HHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCchhHH
Confidence 99999976 6889999999999743321 22110 00 0001
Q ss_pred hhccC--eEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCC---CCCeEEEEeCCCCCCChhHHh
Q 015783 316 VQLLD--EVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPEN---SGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 316 ~~~~~--~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~---~~~~vVvl~t~~G~k~~~~~~ 386 (400)
.+.++ +++.|+|+|+++++++|++.|||+++|+||||++++++++++... .++.||+++||+|+||++++.
T Consensus 595 l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~ 670 (695)
T PRK13802 595 LKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKGYEHPVMIVNISGRGDKDMNTAG 670 (695)
T ss_pred HHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhcccccCCCCEEEEEECCCCcCCHHHHH
Confidence 11233 458999999999999999999999999999999999999976432 256999999999999999864
No 59
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=1.4e-52 Score=413.04 Aligned_cols=293 Identities=19% Similarity=0.138 Sum_probs=249.5
Q ss_pred HHHHhhccCCCcchHHHhhcccCCCCceecccccccCCC-eEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEE
Q 015783 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (400)
Q Consensus 81 l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~-~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (400)
+|+ |+++||.......+...+++|||++++++.+.+|. +||+|+|++|||||||||++.+++.++.++| ..+|
T Consensus 1 ~~~-~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g-----~~~v 74 (328)
T TIGR00260 1 VWR-YREFLPVTPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELG-----NDTV 74 (328)
T ss_pred Ccc-chhhcCCCChhhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcC-----CCEE
Confidence 466 99999998666779999999999999999988886 9999999999999999999999999999988 4689
Q ss_pred EEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCC
Q 015783 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (400)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (400)
+++|+||||+|+|++|+.+|++|+||||++ .++.|+.+++.+||+|+.++++ ++++.+.+.+++++. +.++.++++
T Consensus 75 v~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~n 151 (328)
T TIGR00260 75 LCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGN--FDDAQRLVKQLFGDK-EALGLNSVN 151 (328)
T ss_pred EEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCC--HHHHHHHHHHHHhhc-CeeecccCC
Confidence 999999999999999999999999999998 8999999999999999999874 788888888888765 445555432
Q ss_pred C-hHHHHHHHHhHHHHHHhhhCC-CCCEEEEecCCChhHHhHHHHHHhcC-C----CcEEEEEeCCCCcccc-----CCC
Q 015783 239 N-MANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN-K----EIKVVGVEPAERSVIS-----GEN 306 (400)
Q Consensus 239 ~-~~~~~~g~~ti~~Ei~~Ql~~-~pD~vv~pvG~Gg~~aGi~~~~k~~~-~----~~rvi~Vep~~~~~l~-----~g~ 306 (400)
+ +.++ .||.|+++||++|+++ .||+||+|+|+||+++|++.+|+++. . .+++++|||.+++++. ++.
T Consensus 152 ~~~~~~-~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~ 230 (328)
T TIGR00260 152 SIPYRL-EGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQ 230 (328)
T ss_pred CCCeEe-eeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCC
Confidence 1 6664 6899999999999975 79999999999999999999999742 1 3499999999985442 221
Q ss_pred C-----------CC---Cc------hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC-C
Q 015783 307 A-----------GY---VP------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE-N 365 (400)
Q Consensus 307 ~-----------~~---~~------~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~-~ 365 (400)
+ +. .| +.+.+..+++.+.|+|+|+++++++|++++||+++|++|+++++++++.+++. .
T Consensus 231 ~~~~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~ 310 (328)
T TIGR00260 231 WEPIEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTAD 310 (328)
T ss_pred cCcCCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCC
Confidence 1 00 11 12234678899999999999999999999999999999999999999887643 4
Q ss_pred CCCeEEEEeCCCCCCChh
Q 015783 366 SGKLIAAIFPSFGERYIP 383 (400)
Q Consensus 366 ~~~~vVvl~t~~G~k~~~ 383 (400)
++++||+++||+|.|+.|
T Consensus 311 ~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 311 PAERVVCALTGNGLKDPE 328 (328)
T ss_pred CCCcEEEEecCCCCCCCC
Confidence 678999999999999854
No 60
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.1e-51 Score=413.14 Aligned_cols=259 Identities=20% Similarity=0.247 Sum_probs=227.2
Q ss_pred cCCCCceecccccccCC--------CeEEEEeCCCCC-CCcchhhhHHHHHHH-----HHHcCCCCCCC-----------
Q 015783 102 IGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK----------- 156 (400)
Q Consensus 102 ~~~TPL~~~~~l~~~lg--------~~i~~K~E~~np-tGSfK~Rga~~~~~~-----a~~~G~~~~g~----------- 156 (400)
+++|||+++++|++.+| .+||+|+|++|| |||||||++.+++.. +++.|.+.|+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999988765 799999999999 999999999998864 77888877764
Q ss_pred -----cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCc
Q 015783 157 -----TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (400)
Q Consensus 157 -----~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~ 231 (400)
++||++|+||||.|+|++|+.+|++|+||||.++++.|+++|+.+||+|+.++++ ++++++.+.+++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~--~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETD--YSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHHCCCe
Confidence 4899999999999999999999999999999999999999999999999999864 788999999999887677
Q ss_pred eeeCCCCChHHHHHHHHhHHHHHHhhhCC---C-----CCEEEEecCCChhHHhHHHHHHhc-CCCcEEEEEeCCCCccc
Q 015783 232 YMFQQFDNMANLKIHFDSTGPEIWEDTLG---C-----VDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPAERSVI 302 (400)
Q Consensus 232 ~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~---~-----pD~vv~pvG~Gg~~aGi~~~~k~~-~~~~rvi~Vep~~~~~l 302 (400)
+|+++++++.. ++||+|+|+||++|+++ + ||+||+|+|+||+++|++++||+. .++++||+|||++++++
T Consensus 208 ~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 88898666555 68999999999999952 3 558999999999999999999997 78899999999998766
Q ss_pred cC----CC------------------------CCCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHH
Q 015783 303 SG----EN------------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAA 354 (400)
Q Consensus 303 ~~----g~------------------------~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~a 354 (400)
.. +. ++..++.+.++.+|+++.|+|+|+++++++|++++|+++||+||++++
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lA 366 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFT 366 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHH
Confidence 21 11 112334455678999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 015783 355 AAISLARRP 363 (400)
Q Consensus 355 aa~~l~~~~ 363 (400)
++++++++.
T Consensus 367 Al~~~~~~~ 375 (404)
T cd06447 367 GPAQVLSEA 375 (404)
T ss_pred HHHHHHHhh
Confidence 999988753
No 61
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.6e-51 Score=412.63 Aligned_cols=316 Identities=19% Similarity=0.208 Sum_probs=251.2
Q ss_pred ccCCCCCcccccccchHHHHHhhccCCCcch----HHHhhccc-CCCCceecccccccCC-CeEEEEeCCCCCCCcchhh
Q 015783 64 AAASSSSSSLYATSTREIEKEEGNDFHGVNI----AEDVTQLI-GRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDR 137 (400)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~----~~~v~~~~-~~TPL~~~~~l~~~lg-~~i~~K~E~~nptGSfK~R 137 (400)
+|..++.|+.......+|.+.|.+.+-.++. +..+..+. ++|||+++++|++.+| .+||+|+|++|||||||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R 84 (385)
T TIGR00263 5 DFGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKIN 84 (385)
T ss_pred CcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHH
Confidence 4677778888887888888877775554432 22333344 5899999999999888 8999999999999999999
Q ss_pred hHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcH--HHHHHHHHcCCEEEEeCCC-CC
Q 015783 138 IGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNL--ERRILLRAFGAEIILTDPE-KG 213 (400)
Q Consensus 138 ga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~--~~~~~l~~~GA~V~~~~~~-~~ 213 (400)
++..++..++++|. ..+|+++|+||||+|+|++|+.+|++|+||||+. .+. .++.+|+.+||+|+.++.. ..
T Consensus 85 ~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~ 160 (385)
T TIGR00263 85 NALGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGT 160 (385)
T ss_pred HHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCC
Confidence 99999999998885 4566679999999999999999999999999985 333 5788999999999999753 33
Q ss_pred hhhHHHHHHH-HHHhCCCceee-CCCCC----hHHHHHHHHhHHHHHHhhhC---C-CCCEEEEecCCChhHHhHHHHHH
Q 015783 214 LRGALDKAEE-IVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL---G-CVDIFVAAIGTGGTITGTGRFLK 283 (400)
Q Consensus 214 ~~~a~~~a~~-~a~~~~~~~~~-~~~~~----~~~~~~g~~ti~~Ei~~Ql~---~-~pD~vv~pvG~Gg~~aGi~~~~k 283 (400)
++++++++.+ ++++.++.+|+ .++.| +.++..||+|+|+||++|+. + .||+||+|+|+||+++|++.+|.
T Consensus 161 ~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~ 240 (385)
T TIGR00263 161 LKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFI 240 (385)
T ss_pred HHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHh
Confidence 6667655544 45554456665 33332 35556799999999999983 2 58999999999999999999885
Q ss_pred hcCCCcEEEEEeCCCC--------ccccCCCCC-------------------------------C--CchhhhhhccCeE
Q 015783 284 MMNKEIKVVGVEPAER--------SVISGENAG-------------------------------Y--VPSILDVQLLDEV 322 (400)
Q Consensus 284 ~~~~~~rvi~Vep~~~--------~~l~~g~~~-------------------------------~--~~~~l~~~~~~~~ 322 (400)
+ .+++|||+|||.++ ..+..+.+. . ..+.+.....+++
T Consensus 241 ~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~ 319 (385)
T TIGR00263 241 D-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATY 319 (385)
T ss_pred h-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEE
Confidence 5 68999999999985 223333210 0 0122344556789
Q ss_pred EEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHH
Q 015783 323 IKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTV 385 (400)
Q Consensus 323 ~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~ 385 (400)
+.|+|+|+++++++|++.|||+++|+||++++++++++++. .++++||+++||+|.+|++.+
T Consensus 320 v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l-~~~~~Vv~i~~g~G~~d~~~~ 381 (385)
T TIGR00263 320 EAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTL-PKDQIVVVNLSGRGDKDIFTI 381 (385)
T ss_pred EEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhC-CCCCeEEEEeCCCCcCCHHHH
Confidence 99999999999999999999999999999999999987652 368899999999999999864
No 62
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.8e-51 Score=414.77 Aligned_cols=278 Identities=20% Similarity=0.223 Sum_probs=237.4
Q ss_pred hcccCCCCceecccccccC--------CCeEEEEeCCCCC-CCcchhhhHHHHHHH-----HHHcCCCCCCC--------
Q 015783 99 TQLIGRTPMVYLNKVTEGC--------VGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK-------- 156 (400)
Q Consensus 99 ~~~~~~TPL~~~~~l~~~l--------g~~i~~K~E~~np-tGSfK~Rga~~~~~~-----a~~~G~~~~g~-------- 156 (400)
+.++++|||++++++++.+ +.+||+|+|++|| |||||+|++.+++.. +.+.|.+.++.
T Consensus 65 ~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~ 144 (431)
T TIGR02035 65 TGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEK 144 (431)
T ss_pred cCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcch
Confidence 4599999999999998844 5799999999999 999999999998864 67888876653
Q ss_pred --------cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhC
Q 015783 157 --------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNT 228 (400)
Q Consensus 157 --------~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~ 228 (400)
++|+++|+||||.++|++|+.+|++|+||||+++++.|+++|+.|||+|+.++++ ++++++.|++++++.
T Consensus 145 ~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~--~~~a~~~A~~la~~~ 222 (431)
T TIGR02035 145 KFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESD--YGVAVEEGRKNADAD 222 (431)
T ss_pred hhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999999875 889999999999887
Q ss_pred CCceeeCCCCChHHHHHHHHhHHHHHHhhhCC--------CCCEEEEecCCChhHHhHHHHHHhc-CCCcEEEEEeCCCC
Q 015783 229 PNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPAER 299 (400)
Q Consensus 229 ~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~--------~pD~vv~pvG~Gg~~aGi~~~~k~~-~~~~rvi~Vep~~~ 299 (400)
++.+++++ .|+.++.+||+|+|.||++|+++ .||+|++|+|+||+++||+.+||++ ++++|||+|||+++
T Consensus 223 ~~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s 301 (431)
T TIGR02035 223 PMCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHS 301 (431)
T ss_pred CCeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCC
Confidence 67778777 45555568999999999999953 4779999999999999999999997 78999999999999
Q ss_pred cccc----CCC------------------------CCCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHH
Q 015783 300 SVIS----GEN------------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGA 351 (400)
Q Consensus 300 ~~l~----~g~------------------------~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sga 351 (400)
+++. .+. ++...+.+.++.+|+++.|+|+|+++++++|++++||++||+||+
T Consensus 302 ~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa 381 (431)
T TIGR02035 302 PCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALA 381 (431)
T ss_pred HHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHH
Confidence 8652 111 112233344668999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC--------C----CCCCeEEEEeCCCCC
Q 015783 352 AAAAAISLARRP--------E----NSGKLIAAIFPSFGE 379 (400)
Q Consensus 352 a~aaa~~l~~~~--------~----~~~~~vVvl~t~~G~ 379 (400)
+++++.++.+.. . ..+.++++-.||++.
T Consensus 382 ~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~ 421 (431)
T TIGR02035 382 GMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWATGGGM 421 (431)
T ss_pred HHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEecCCCC
Confidence 999998877652 0 145677777777553
No 63
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=1.6e-51 Score=414.27 Aligned_cols=287 Identities=19% Similarity=0.168 Sum_probs=239.4
Q ss_pred hHHHh--hcccCCCCceecccccccCC-CeEEEEeCCC-CCCCcchhhhHHHHHHHHHH--cCCC--------------C
Q 015783 94 IAEDV--TQLIGRTPMVYLNKVTEGCV-GNVAAKLESM-EPCRSVKDRIGYSMITDAEE--SGDI--------------T 153 (400)
Q Consensus 94 ~~~~v--~~~~~~TPL~~~~~l~~~lg-~~i~~K~E~~-nptGSfK~Rga~~~~~~a~~--~G~~--------------~ 153 (400)
+.+.+ ...+++|||+++++|++.+| .+||+|+|++ |||||||+||+.+.+..+.. .+.- .
T Consensus 32 a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (399)
T PRK08206 32 ARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVR 111 (399)
T ss_pred HHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHH
Confidence 45566 45888999999999999999 6999999998 59999999999998887753 3310 0
Q ss_pred C--CCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCc
Q 015783 154 P--GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (400)
Q Consensus 154 ~--g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~ 231 (400)
+ ...+|+++|+||||+|+|++|+.+|++|+||||.++++.|+.+|+.+||+|+.++++ ++++++.+.+++++. ++
T Consensus 112 ~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~ 188 (399)
T PRK08206 112 EKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGN--YDDSVRLAAQEAQEN-GW 188 (399)
T ss_pred HhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHHc-CC
Confidence 0 012599999999999999999999999999999999999999999999999999964 788999999988875 67
Q ss_pred eeeC-----CCCC-hHHHHHHHHhHHHHHHhhhCC---CCCEEEEecCCChhHHhHHHHHHhcC--CCcEEEEEeCCCCc
Q 015783 232 YMFQ-----QFDN-MANLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMN--KEIKVVGVEPAERS 300 (400)
Q Consensus 232 ~~~~-----~~~~-~~~~~~g~~ti~~Ei~~Ql~~---~pD~vv~pvG~Gg~~aGi~~~~k~~~--~~~rvi~Vep~~~~ 300 (400)
++++ +|+| +.++++||.|+++||++|+++ .||+||+|+|+||+++|++.+|++++ +.+|||+|||++++
T Consensus 189 ~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~ 268 (399)
T PRK08206 189 VVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD 268 (399)
T ss_pred EEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc
Confidence 7776 6765 566678999999999999975 69999999999999999999999984 47999999999998
Q ss_pred cccC----CCC-------------------CCCchhhhhhccCeEEEeCHHHHHHHHHHHHH----HcCCeeehhHHHHH
Q 015783 301 VISG----ENA-------------------GYVPSILDVQLLDEVIKVTNDEAVNMARRLAL----EEGLLVGISSGAAA 353 (400)
Q Consensus 301 ~l~~----g~~-------------------~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~----~eGi~~~p~sgaa~ 353 (400)
++.. |.+ +..++.+.++.+|+++.|+|+|+++++++|++ ++|+++||+||+++
T Consensus 269 ~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~l 348 (399)
T PRK08206 269 CLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGL 348 (399)
T ss_pred hHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHH
Confidence 7631 211 11234455678899999999999999999996 78999999999999
Q ss_pred HHHHHHhcC---------CC-CCCCeEEEEeCCCCCCChhH
Q 015783 354 AAAISLARR---------PE-NSGKLIAAIFPSFGERYIPT 384 (400)
Q Consensus 354 aaa~~l~~~---------~~-~~~~~vVvl~t~~G~k~~~~ 384 (400)
++++++.++ +. .++++||+|+| +|.++.+.
T Consensus 349 Aa~~~~~~~~~~~~~~~~~~i~~~~~Vv~ilt-gG~~d~~~ 388 (399)
T PRK08206 349 GALAALMTDPDYQELREKLGLDEDSRVLLIST-EGDTDPDR 388 (399)
T ss_pred HHHHHHHhcchhhHHHHhcCCCCCCEEEEEEC-CCCCCHHH
Confidence 999976532 22 35789999999 57776654
No 64
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-51 Score=396.26 Aligned_cols=281 Identities=23% Similarity=0.257 Sum_probs=252.7
Q ss_pred hHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHH
Q 015783 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (400)
Q Consensus 94 ~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (400)
.+..++.++-.|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++...-++++ +..++++|+||||.|+|+
T Consensus 56 ~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Ay 131 (457)
T KOG1250|consen 56 AHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAY 131 (457)
T ss_pred hhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHH
Confidence 3456788888999999989999999999999999999999999999999998777775 678999999999999999
Q ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHH
Q 015783 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 174 aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~E 253 (400)
+|+++|++|+||||..++..|.+.++.+||+|++.+.+ +++|..+|.++++++ ++.|++||++|+.| +|+.|++.|
T Consensus 132 aa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~--~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTig~E 207 (457)
T KOG1250|consen 132 AARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGED--WDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTIGLE 207 (457)
T ss_pred HHHhcCCceEEEecCCChHHHHHHHhccCCEEEEeccc--HHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchHHHH
Confidence 99999999999999999999999999999999999866 789999999999986 89999999999997 899999999
Q ss_pred HHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC----CCC------------------CCCc
Q 015783 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENA------------------GYVP 311 (400)
Q Consensus 254 i~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~----g~~------------------~~~~ 311 (400)
|.+|+...++.|+|||||||+++||+.++++..|+++|||||+.+|.++.. |.+ +...
T Consensus 208 Il~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~t 287 (457)
T KOG1250|consen 208 ILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENT 287 (457)
T ss_pred HHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHH
Confidence 999996556699999999999999999999999999999999999987753 332 2334
Q ss_pred hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh
Q 015783 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP 383 (400)
Q Consensus 312 ~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~ 383 (400)
+.+.+..+|+++.|+|+|+..++.++.+.|..++||++|+++|+...- +....+++++|.+++|++..+-+
T Consensus 288 f~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~ilsG~n~~~~~ 358 (457)
T KOG1250|consen 288 FELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSILSGGNIDFDS 358 (457)
T ss_pred HHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeecccCCCCccc
Confidence 556678899999999999999999999999999999999999998876 44457889999999998765433
No 65
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.8e-50 Score=402.98 Aligned_cols=290 Identities=21% Similarity=0.237 Sum_probs=232.0
Q ss_pred CCcchHHHhhc--ccCCCCceecccccccC-CCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCCh
Q 015783 90 HGVNIAEDVTQ--LIGRTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGN 166 (400)
Q Consensus 90 p~~~~~~~v~~--~~~~TPL~~~~~l~~~l-g~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN 166 (400)
+.++....... ...+|||+++++|++.+ +.+||+|+|++|||||||+|++..++..+.++|. ...++++|+||
T Consensus 18 ~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN 93 (365)
T cd06446 18 DFPEELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQ 93 (365)
T ss_pred ccHHHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchH
Confidence 34444444444 33589999999999988 4899999999999999999999999999999985 34444479999
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCCc---HHHHHHHHHcCCEEEEeCCCC-ChhhHHHHHHHHHHhC-CCcee-eCCC---
Q 015783 167 TGLGIAFVAAVKGYKLIVTMPASTN---LERRILLRAFGAEIILTDPEK-GLRGALDKAEEIVLNT-PNAYM-FQQF--- 237 (400)
Q Consensus 167 ~g~AlA~aa~~~Gl~~~Vvvp~~~~---~~~~~~l~~~GA~V~~~~~~~-~~~~a~~~a~~~a~~~-~~~~~-~~~~--- 237 (400)
||+|+|++|+.+|++|+||||...+ +.++.+|+.+||+|+.++... ++.+++.++.+...+. ++.+| +.++
T Consensus 94 ~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~ 173 (365)
T cd06446 94 HGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGP 173 (365)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCC
Confidence 9999999999999999999998643 367889999999999998642 3556665565553333 23333 3332
Q ss_pred -CChHHHHHHHHhHHHHHHhhhCC----CCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCC-------
Q 015783 238 -DNMANLKIHFDSTGPEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE------- 305 (400)
Q Consensus 238 -~~~~~~~~g~~ti~~Ei~~Ql~~----~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g------- 305 (400)
.++.+++.||+|+|+||++|+.+ .||+||+|+|+||+++|++.+|++ .+++|||+|||.+|+.+.+.
T Consensus 174 ~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~ 252 (365)
T cd06446 174 HPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFG 252 (365)
T ss_pred CCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccC
Confidence 12346678999999999999953 699999999999999999998877 45899999999998877421
Q ss_pred -CCC-------------------------------CC--chhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHH
Q 015783 306 -NAG-------------------------------YV--PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGA 351 (400)
Q Consensus 306 -~~~-------------------------------~~--~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sga 351 (400)
.+. .. .+.+..+.+|+++.|+|+|+++++++++++|||+++|+||+
T Consensus 253 g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssga 332 (365)
T cd06446 253 GTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSH 332 (365)
T ss_pred CCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchH
Confidence 110 00 11244566789999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHH
Q 015783 352 AAAAAISLARRPENSGKLIAAIFPSFGERYIPTV 385 (400)
Q Consensus 352 a~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~ 385 (400)
++++++++.++. .++++||+|+||+|.||++++
T Consensus 333 alAa~~~~~~~~-~~~~~Vv~i~~g~G~k~~~~~ 365 (365)
T cd06446 333 AIAYAIKLAKKL-GKEKVIVVNLSGRGDKDLQTV 365 (365)
T ss_pred HHHHHHHHHHhc-CCCCeEEEEeCCCCccccccC
Confidence 999999998765 467899999999999999863
No 66
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=8.3e-51 Score=407.84 Aligned_cols=292 Identities=15% Similarity=0.061 Sum_probs=245.4
Q ss_pred hHHHHHhhccCCCcchHHHhhcccCCCCceecccccccCCC-eEEEEeCC-------CCCCCcchhhhHHHHHHHHHHcC
Q 015783 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLES-------MEPCRSVKDRIGYSMITDAEESG 150 (400)
Q Consensus 79 ~~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~-~i~~K~E~-------~nptGSfK~Rga~~~~~~a~~~G 150 (400)
.++|| |+++||..+. ....+.|||+++++|++.+|. +||+|+|+ +|||||||||++.+.+..+.+.|
T Consensus 42 ~~~wr-y~~~lP~~~~----~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g 116 (398)
T TIGR03844 42 PGIFR-YYDWLPVTGH----LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERG 116 (398)
T ss_pred Cchhh-hHhhCCCCCC----CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcC
Confidence 56998 9999998653 457778999999999999997 99996666 89999999999999999999998
Q ss_pred CCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCC
Q 015783 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN 230 (400)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~ 230 (400)
.+.|+++|+||||.|+|++|+++|++|+||||++.+..+...++.+|++|+.++++ ++++++.+.+++++. +
T Consensus 117 -----~~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~--~d~a~~~a~~~a~~~-g 188 (398)
T TIGR03844 117 -----GKTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGD--YTDAIALADRIATLP-G 188 (398)
T ss_pred -----CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCC--HHHHHHHHHHHHHhC-C
Confidence 47899999999999999999999999999999986543344457899999999865 889999999988775 5
Q ss_pred ceeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcC-------CCcEEEEEeCCCCcccc
Q 015783 231 AYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN-------KEIKVVGVEPAERSVIS 303 (400)
Q Consensus 231 ~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~-------~~~rvi~Vep~~~~~l~ 303 (400)
++..++++|+.. ++|++|+++||++|++..||+||+|+|+|+++.|++.+++++. ..+|+++|||++|+++.
T Consensus 189 ~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~ 267 (398)
T TIGR03844 189 FVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMV 267 (398)
T ss_pred ccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHH
Confidence 554566678887 4899999999999997459999999999998999998888742 44899999999998764
Q ss_pred C----CCCC----------------C--------Cc--------hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeeh
Q 015783 304 G----ENAG----------------Y--------VP--------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGI 347 (400)
Q Consensus 304 ~----g~~~----------------~--------~~--------~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p 347 (400)
. |.+. . .| ....++..++++.|+|+|+.++++.|++++|++++|
T Consensus 268 ~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEp 347 (398)
T TIGR03844 268 NAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILP 347 (398)
T ss_pred HHHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccc
Confidence 2 2110 0 01 122356678999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCC-CCCCeEEEEeCCCCCCChhH
Q 015783 348 SSGAAAAAAISLARRPE-NSGKLIAAIFPSFGERYIPT 384 (400)
Q Consensus 348 ~sgaa~aaa~~l~~~~~-~~~~~vVvl~t~~G~k~~~~ 384 (400)
+||+++|+++++.+++. .++++||+++||+|.|++..
T Consensus 348 a~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~~~~ 385 (398)
T TIGR03844 348 AAAVAVAALVKAVESGFIGPDDDILLNITGGGYKRLRE 385 (398)
T ss_pred cHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhhHHh
Confidence 99999999999988764 37899999999999998754
No 67
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=3.2e-50 Score=423.21 Aligned_cols=320 Identities=18% Similarity=0.195 Sum_probs=260.6
Q ss_pred cCCCccCCCCCcccccccchHHHHHhhccCCCcchHHHh----hccc-CCCCceecccccccCCCeEEEEeCCCCCCCcc
Q 015783 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLI-GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSV 134 (400)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~v----~~~~-~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSf 134 (400)
+.=+.+...+.|+.......+|.+.|.+....++....+ ..+. ++|||+++++|++.+|.+||+|+|++||||||
T Consensus 222 ~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~ 301 (610)
T PRK13803 222 GRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSH 301 (610)
T ss_pred CcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccH
Confidence 334458899999999999999999999988776544443 3344 48999999999998899999999999999999
Q ss_pred hhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC---cHHHHHHHHHcCCEEEEeCCC
Q 015783 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 135 K~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~---~~~~~~~l~~~GA~V~~~~~~ 211 (400)
|+|++..++..+++.|+ .++|+++|+||||+|+|++|+.+|++|+||||... ...++.+|+.+||+|+.++..
T Consensus 302 K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~ 377 (610)
T PRK13803 302 KINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSG 377 (610)
T ss_pred HHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCC
Confidence 99999999999999885 56677899999999999999999999999999864 356888999999999999853
Q ss_pred -CChhhHHHHHHHHH-HhCCCceeeCCCC-----ChHHHHHHHHhHHHHHHhhhC----CCCCEEEEecCCChhHHhHHH
Q 015783 212 -KGLRGALDKAEEIV-LNTPNAYMFQQFD-----NMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGR 280 (400)
Q Consensus 212 -~~~~~a~~~a~~~a-~~~~~~~~~~~~~-----~~~~~~~g~~ti~~Ei~~Ql~----~~pD~vv~pvG~Gg~~aGi~~ 280 (400)
.++.++++++.+.+ .+.++.+|+.++. .+.++..||+|+|.||.+|+. ..||+||+|+|+|||++|++.
T Consensus 378 ~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~ 457 (610)
T PRK13803 378 SKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFY 457 (610)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHH
Confidence 34677877776654 4445677764432 144555699999999999984 369999999999999999999
Q ss_pred HHHhcCCCcEEEEEeCCCC--------ccccCCCC-------------------------------CCCch--hhhhhcc
Q 015783 281 FLKMMNKEIKVVGVEPAER--------SVISGENA-------------------------------GYVPS--ILDVQLL 319 (400)
Q Consensus 281 ~~k~~~~~~rvi~Vep~~~--------~~l~~g~~-------------------------------~~~~~--~l~~~~~ 319 (400)
+|++ +++++||||||.++ .++..+.+ +.-|. .+.....
T Consensus 458 ~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~ 536 (610)
T PRK13803 458 HFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGR 536 (610)
T ss_pred HHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCC
Confidence 9965 78999999999985 23333222 11111 1223344
Q ss_pred CeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHH
Q 015783 320 DEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTV 385 (400)
Q Consensus 320 ~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~ 385 (400)
++++.|+|+|+++++++|++.|||+++++||+++|++++++.+. .++++||+++||+|.||++++
T Consensus 537 ~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~-~~~~~Vvv~lsG~G~kd~~~~ 601 (610)
T PRK13803 537 AIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKF-KKKDIVIVNLSGRGDKDIPTL 601 (610)
T ss_pred eEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhc-CCCCeEEEEeCCCCcCCHHHH
Confidence 57999999999999999999999999999999999999987553 458899999999999999865
No 68
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.7e-49 Score=375.42 Aligned_cols=243 Identities=41% Similarity=0.584 Sum_probs=227.2
Q ss_pred CCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEE
Q 015783 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (400)
Q Consensus 105 TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~V 184 (400)
|||++++++++..+.+||+|+|++|||||||||++.+++..+++.|.+ + ..+|+++|+||||.|+|++|+.+|++|+|
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~-~~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-P-KGVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-C-CCEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987779999999999999999999999999999999854 3 36799999999999999999999999999
Q ss_pred EeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCC-CCC
Q 015783 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG-CVD 263 (400)
Q Consensus 185 vvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~-~pD 263 (400)
|||.+.++.++++|+.+|++|+.++++ ++++.+.+.+++++.++++++++|.|+.++ .||.++++||.+|+++ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~-~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANI-AGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHH-HHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999876 778899999999886689999999999986 6888999999999976 699
Q ss_pred EEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCC
Q 015783 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGL 343 (400)
Q Consensus 264 ~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi 343 (400)
+||+|+|+||+++|++.+|++.++.+|||+||| +++.|+|+|+++++++|++.+||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~------------------------~~~~v~d~~~~~a~~~l~~~~gi 211 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------------EVVTVSDEEALEAIRLLAREEGI 211 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee------------------------eEEEECHHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999 88999999999999999999999
Q ss_pred eeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 015783 344 LVGISSGAAAAAAISLARRPENSGKLIAAIFPSF 377 (400)
Q Consensus 344 ~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~ 377 (400)
+++|++|++++++.+++++. .++++||+++||+
T Consensus 212 ~~~pssa~~~aa~~~~~~~~-~~~~~vv~v~tg~ 244 (244)
T cd00640 212 LVEPSSAAALAAALKLAKKL-GKGKTVVVILTGG 244 (244)
T ss_pred eECHhHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 99999999999999998775 4678999999984
No 69
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=1.5e-48 Score=389.16 Aligned_cols=272 Identities=18% Similarity=0.173 Sum_probs=225.8
Q ss_pred CCCCceecccccccCC-CeEEEEeCCCCC-CCcchhhhHHHHHHHHHHc----------------CCCC--CCCcEEEEe
Q 015783 103 GRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAEES----------------GDIT--PGKTVLVEP 162 (400)
Q Consensus 103 ~~TPL~~~~~l~~~lg-~~i~~K~E~~np-tGSfK~Rga~~~~~~a~~~----------------G~~~--~g~~~vv~a 162 (400)
.+|||+++++|++.+| .+||+|+|++|+ |||||+||+.+.+..+.++ +.+. .+.++|+++
T Consensus 21 ~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~a 100 (376)
T TIGR01747 21 RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATA 100 (376)
T ss_pred CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEEEE
Confidence 4899999999999999 699999999985 8999999999999887552 1111 124689999
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC-----CC
Q 015783 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ-----QF 237 (400)
Q Consensus 163 ssGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~-----~~ 237 (400)
|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++.+.+.+++++. ++++++ +|
T Consensus 101 SsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~--~~~a~~~a~~~~~~~-g~~~~~~~~~~~~ 177 (376)
T TIGR01747 101 TDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMN--YDDTVRLAMQMAQQH-GWVVVQDTAWEGY 177 (376)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CcEEecccccccc
Confidence 9999999999999999999999999999999999999999999999864 788889998888775 677776 56
Q ss_pred CC--hHHHHHHHHhHHHHHHhhhCC----CCCEEEEecCCChhHHhHHHHHHhcCC--CcEEEEEeCCCCccccC-----
Q 015783 238 DN--MANLKIHFDSTGPEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNK--EIKVVGVEPAERSVISG----- 304 (400)
Q Consensus 238 ~~--~~~~~~g~~ti~~Ei~~Ql~~----~pD~vv~pvG~Gg~~aGi~~~~k~~~~--~~rvi~Vep~~~~~l~~----- 304 (400)
++ +.. ++||+|+++||++|++. .||+||+|+|+||+++|++.++++... .++||+|||++|+++..
T Consensus 178 ~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~ 256 (376)
T TIGR01747 178 EKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKK 256 (376)
T ss_pred ccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhc
Confidence 65 443 57999999999999952 699999999999999999999987643 37999999999987742
Q ss_pred -CC-------C------------CCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHc----CCeeehhHHHHHHHHHH--
Q 015783 305 -EN-------A------------GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEE----GLLVGISSGAAAAAAIS-- 358 (400)
Q Consensus 305 -g~-------~------------~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~e----Gi~~~p~sgaa~aaa~~-- 358 (400)
+. + +..+|.+.++..+.++.|+|+|+.+++++|++.. ++++||++++++|++..
T Consensus 257 ~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~ 336 (376)
T TIGR01747 257 DGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVM 336 (376)
T ss_pred CCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHH
Confidence 21 1 2234556678889999999999999999999865 49999999999887773
Q ss_pred -------HhcCCC-CCCCeEEEEeCCCC
Q 015783 359 -------LARRPE-NSGKLIAAIFPSFG 378 (400)
Q Consensus 359 -------l~~~~~-~~~~~vVvl~t~~G 378 (400)
+.+++. .++++||+++|++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~vvvi~t~gn 364 (376)
T TIGR01747 337 YHPQYQSLMEKLQLDKDAVVLVISTEGD 364 (376)
T ss_pred hCchHHHHHHHcCCCCCCEEEEEeCCCC
Confidence 223333 34788988888743
No 70
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=365.69 Aligned_cols=316 Identities=19% Similarity=0.238 Sum_probs=263.2
Q ss_pred ccCCCCCcccccccchHHHHHhhccCCCcchHHH----hhccc-CCCCceecccccccCCCeEEEEeCCCCCCCcchhhh
Q 015783 64 AAASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLI-GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRI 138 (400)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~~~~~~lp~~~~~~~----v~~~~-~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rg 138 (400)
.+...+.|+.+.+...+|.+.|.+...+++.... +..+. +||||+.+++|++.+|++||+|+|++|+||+||+|.
T Consensus 11 ~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN 90 (396)
T COG0133 11 EFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINN 90 (396)
T ss_pred ccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHH
Confidence 4788899999999999999999987766654333 33344 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-C--cHHHHHHHHHcCCEEEEeCC-CCCh
Q 015783 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-T--NLERRILLRAFGAEIILTDP-EKGL 214 (400)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~--~~~~~~~l~~~GA~V~~~~~-~~~~ 214 (400)
+..++..|++.|+ ++.|+++++|+||.|.|.+|++||++|+|||... + +..++.+|+.+||+|+.|.. ..+.
T Consensus 91 ~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TL 166 (396)
T COG0133 91 ALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTL 166 (396)
T ss_pred HHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchH
Confidence 9999999999998 8899999999999999999999999999999873 2 34567899999999998864 4578
Q ss_pred hhHHHHHHHHHHhC-CCceee-------CCCCChHHHHHHHHhHHHHHHhhh----CCCCCEEEEecCCChhHHhHHHHH
Q 015783 215 RGALDKAEEIVLNT-PNAYMF-------QQFDNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFL 282 (400)
Q Consensus 215 ~~a~~~a~~~a~~~-~~~~~~-------~~~~~~~~~~~g~~ti~~Ei~~Ql----~~~pD~vv~pvG~Gg~~aGi~~~~ 282 (400)
.|++.+|.+.+..+ .+.+|+ +|| |..+...|+.||.|..+|+ +..||.||.|||||||+.|++..|
T Consensus 167 KDA~neAlRdWvtn~~~ThY~iGsa~GPHPy--P~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~F 244 (396)
T COG0133 167 KDAINEALRDWVTNVEDTHYLIGSAAGPHPY--PTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPF 244 (396)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccCCCCc--hHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccc
Confidence 99999999887653 456665 344 5666779999999999987 346999999999999999998877
Q ss_pred HhcCCCcEEEEEeCCCC--------ccccCCCCCC---------------------------------CchhhhhhccCe
Q 015783 283 KMMNKEIKVVGVEPAER--------SVISGENAGY---------------------------------VPSILDVQLLDE 321 (400)
Q Consensus 283 k~~~~~~rvi~Vep~~~--------~~l~~g~~~~---------------------------------~~~~l~~~~~~~ 321 (400)
.. .+++++||||+.+- +++..|.++. ....+....-.+
T Consensus 245 i~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~ 323 (396)
T COG0133 245 ID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAE 323 (396)
T ss_pred cC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCcee
Confidence 65 46899999999874 4455454411 111222333446
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhh
Q 015783 322 VIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLF 387 (400)
Q Consensus 322 ~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~ 387 (400)
++.|+|+|++++.+.|.+.|||++..+|+||+|.+++++++. .+++.+||.++|.|+|++.++..
T Consensus 324 y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~-~~~~~ivvnlSGRGDKDv~tv~~ 388 (396)
T COG0133 324 YVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKL-PKDEIIVVNLSGRGDKDVFTVAK 388 (396)
T ss_pred EEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhc-CCCcEEEEEccCCCcccHHHHHH
Confidence 899999999999999999999999999999999999999875 35568999999999999987653
No 71
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-48 Score=358.67 Aligned_cols=299 Identities=33% Similarity=0.528 Sum_probs=260.3
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (400)
-+...+|+|||++++.|++..|++|+.|.|.+||.||.|||.|++++..|.++|++.+| -+|++.|+|++|.++|..|.
T Consensus 42 Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA~v~~ 120 (391)
T KOG1481|consen 42 GVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLAHVAR 120 (391)
T ss_pred hhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHHHhhh
Confidence 67778999999999999999999999999999999999999999999999999999997 67999999999999999999
Q ss_pred HcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCC--hhhHHHHHHHHHHhCC------CceeeCCCCChHHHHHHHH
Q 015783 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG--LRGALDKAEEIVLNTP------NAYMFQQFDNMANLKIHFD 248 (400)
Q Consensus 177 ~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~--~~~a~~~a~~~a~~~~------~~~~~~~~~~~~~~~~g~~ 248 (400)
.+|++|+|+||.+++.+|.+.++.+||+|+.|++..- -..-+..|++.+.+.+ ..++.+||+|+.||..||.
T Consensus 121 a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHye 200 (391)
T KOG1481|consen 121 ALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYE 200 (391)
T ss_pred hcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhc
Confidence 9999999999999999999999999999999876421 1223344444333322 2367899999999999999
Q ss_pred hHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCC-cEEEEEeCCCCccccC-------------CC-C----CC
Q 015783 249 STGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-IKVVGVEPAERSVISG-------------EN-A----GY 309 (400)
Q Consensus 249 ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~-~rvi~Vep~~~~~l~~-------------g~-~----~~ 309 (400)
++|+||+.|..++.|.+++.+|+||+++|+.+++|++.+. +.++.++|.++..+.+ |+ + +.
T Consensus 201 tTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dt 280 (391)
T KOG1481|consen 201 TTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDT 280 (391)
T ss_pred CcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcch
Confidence 9999999999999999999999999999999999998865 8899999998853322 11 0 11
Q ss_pred -----------CchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCC
Q 015783 310 -----------VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFG 378 (400)
Q Consensus 310 -----------~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G 378 (400)
-.+.+..+++|+.+.|+|++++++.+.|..++|++++-+++....+|+++++.. .+|.+||+|+|++|
T Consensus 281 i~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG 359 (391)
T KOG1481|consen 281 ITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSG 359 (391)
T ss_pred hhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCc
Confidence 123445678999999999999999999999999999999999999999999875 69999999999999
Q ss_pred CCChhHHhhHHHHHHhccc
Q 015783 379 ERYIPTVLFRSIYEEVQNM 397 (400)
Q Consensus 379 ~k~~~~~~~~~~~~~~~~~ 397 (400)
+||++..+.++++......
T Consensus 360 ~rh~sk~~~~~~l~~~~l~ 378 (391)
T KOG1481|consen 360 SRHLSKLFSESFLESKKLS 378 (391)
T ss_pred chHHHHhcCHHHHhhcCCC
Confidence 9999999988888776543
No 72
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=1.5e-47 Score=384.45 Aligned_cols=274 Identities=20% Similarity=0.181 Sum_probs=222.1
Q ss_pred cCCCCceecccccccCC-CeEEEEeCCCCC-CCcchhhhHHHHHHHHH--HcCCC--------------C--CCCcEEEE
Q 015783 102 IGRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAE--ESGDI--------------T--PGKTVLVE 161 (400)
Q Consensus 102 ~~~TPL~~~~~l~~~lg-~~i~~K~E~~np-tGSfK~Rga~~~~~~a~--~~G~~--------------~--~g~~~vv~ 161 (400)
+.+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+. +.|.. . ....+|++
T Consensus 39 ~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv~ 118 (396)
T TIGR03528 39 YQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFVT 118 (396)
T ss_pred CcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEEE
Confidence 35899999999999999 699999999885 99999999999998753 33310 0 00237999
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC-----C
Q 015783 162 PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ-----Q 236 (400)
Q Consensus 162 assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~-----~ 236 (400)
+|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++.+.+.+++++. ++++++ +
T Consensus 119 aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~--~~~a~~~a~~~a~~~-g~~~v~~~~~~~ 195 (396)
T TIGR03528 119 ATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLN--YDDAVRLAWKMAQEN-GWVMVQDTAWEG 195 (396)
T ss_pred ECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CcEeeccccccc
Confidence 99999999999999999999999999999999999999999999999864 788899999988875 677775 6
Q ss_pred CCCh-HHHHHHHHhHHHHHHhhhC----CCCCEEEEecCCChhHHhHHHHHHhc-CCC-cEEEEEeCCCCccccC-----
Q 015783 237 FDNM-ANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMM-NKE-IKVVGVEPAERSVISG----- 304 (400)
Q Consensus 237 ~~~~-~~~~~g~~ti~~Ei~~Ql~----~~pD~vv~pvG~Gg~~aGi~~~~k~~-~~~-~rvi~Vep~~~~~l~~----- 304 (400)
|+|. ..++.||.|+++||++|++ ..||+||+|+|+||+++|++.++++. .+. +|||+|||++++++..
T Consensus 196 ~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~ 275 (396)
T TIGR03528 196 YEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIAD 275 (396)
T ss_pred cccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhc
Confidence 7652 2334799999999999996 26999999999999999999988654 333 5999999999987742
Q ss_pred -CCC-------------------CCCchhhhhhccCeEEEeCHHHHHHHHHHHHH----HcCCeeehhHHHHHHHHHH--
Q 015783 305 -ENA-------------------GYVPSILDVQLLDEVIKVTNDEAVNMARRLAL----EEGLLVGISSGAAAAAAIS-- 358 (400)
Q Consensus 305 -g~~-------------------~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~----~eGi~~~p~sgaa~aaa~~-- 358 (400)
+.+ +..++.+.++.+|+++.|+|+|+.+++++|++ +++++++|++++++|++..
T Consensus 276 ~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~ 355 (396)
T TIGR03528 276 DGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVM 355 (396)
T ss_pred CCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHH
Confidence 111 11234455678999999999999999999997 5799999999999855422
Q ss_pred -------HhcCCC-CCCCeEEEEeCCCC
Q 015783 359 -------LARRPE-NSGKLIAAIFPSFG 378 (400)
Q Consensus 359 -------l~~~~~-~~~~~vVvl~t~~G 378 (400)
+.+++. .++++||+|+|++.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~vv~i~tggn 383 (396)
T TIGR03528 356 TNPDYKELREKLQLDKNSRVLLISTEGD 383 (396)
T ss_pred hCchhHHHHHhcCCCCCCEEEEEECCCC
Confidence 222222 35789999999854
No 73
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-48 Score=350.47 Aligned_cols=285 Identities=18% Similarity=0.255 Sum_probs=249.7
Q ss_pred cchHHHhhcccCCCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHH
Q 015783 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGI 171 (400)
Q Consensus 92 ~~~~~~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~Al 171 (400)
.++++++...+.+||.+.++.|.+..|.+||||+|++|.+|+||.|||.+.+..+..+.. .+.+++.|+||||.|+
T Consensus 13 ~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaqAl 88 (323)
T KOG1251|consen 13 RAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQAL 88 (323)
T ss_pred HHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHHHH
Confidence 356778999999999999999999999999999999999999999999999998875544 5689999999999999
Q ss_pred HHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHH
Q 015783 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTG 251 (400)
Q Consensus 172 A~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~ 251 (400)
|++|+..|++|+||||.+.+..|+..++.|||+|+.+++. .+++-+.+.++.++. +.+.++||+.|..+ .||+|++
T Consensus 89 alaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqgTiA 164 (323)
T KOG1251|consen 89 ALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQGTIA 164 (323)
T ss_pred HHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccchHH
Confidence 9999999999999999999999999999999999999875 345566678888876 78899999999984 8999999
Q ss_pred HHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCcccc----CC------------------CCCC
Q 015783 252 PEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----GE------------------NAGY 309 (400)
Q Consensus 252 ~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~----~g------------------~~~~ 309 (400)
+|+++|.+ ..|.+|+|+||||+++|++...+.+.|+++|++|||+.+..-. .| +.|.
T Consensus 165 ~ElleqVg-~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~ 243 (323)
T KOG1251|consen 165 LELLEQVG-EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGP 243 (323)
T ss_pred HHHHHhhC-ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccc
Confidence 99999994 8999999999999999999999999999999999998874221 11 1266
Q ss_pred CchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhhHH
Q 015783 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLFRS 389 (400)
Q Consensus 310 ~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~~~ 389 (400)
..|++.++++|++++|+|+|+.++++.+|++-.+.++|+++.++|+++..-.+ ...+++.+|+||+. +|+-.|+.
T Consensus 244 ~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~--~~~K~igIiLsGGN---VD~~~~~s 318 (323)
T KOG1251|consen 244 LTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA--LNIKRIGIILSGGN---VDLNSWAS 318 (323)
T ss_pred cchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH--hccCceEEEEeCCc---ccccchhh
Confidence 78999999999999999999999999999999999999999999998755443 45789999999865 34444554
Q ss_pred H
Q 015783 390 I 390 (400)
Q Consensus 390 ~ 390 (400)
+
T Consensus 319 ~ 319 (323)
T KOG1251|consen 319 F 319 (323)
T ss_pred e
Confidence 4
No 74
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=4.8e-47 Score=369.28 Aligned_cols=267 Identities=33% Similarity=0.488 Sum_probs=221.3
Q ss_pred hhcccCCCCceecc--cccccCCCeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHH
Q 015783 98 VTQLIGRTPMVYLN--KVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (400)
Q Consensus 98 v~~~~~~TPL~~~~--~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (400)
|+.++++|||++++ .+.+..+.+||+|+|++|||||||+|++.+++.+++++| .++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~-----~~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKG-----GRTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTT-----TSEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhccccc-----cceeeeeccCCceehhhhhh
Confidence 57889999999975 455566799999999999999999999999999999987 57899999999999999999
Q ss_pred HHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHh-------CCCceeeCCCCChHHHHHHHH
Q 015783 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLN-------TPNAYMFQQFDNMANLKIHFD 248 (400)
Q Consensus 176 ~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~-------~~~~~~~~~~~~~~~~~~g~~ 248 (400)
+.+|++|+||||+++++.++.+|+.+||+|+.++.+ ++++.+.+.+.+++ ..+. +++| ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999998864 44445555444432 1112 5667 4555568999
Q ss_pred hHHHHHHhhhCCCCCE--EEEecCCChhHHhHHHHHHh--cCCCcEEEEEeCCCCccccC----CCC-------------
Q 015783 249 STGPEIWEDTLGCVDI--FVAAIGTGGTITGTGRFLKM--MNKEIKVVGVEPAERSVISG----ENA------------- 307 (400)
Q Consensus 249 ti~~Ei~~Ql~~~pD~--vv~pvG~Gg~~aGi~~~~k~--~~~~~rvi~Vep~~~~~l~~----g~~------------- 307 (400)
+++.||.+|++ .||. ||+|+|+||+++|++.++++ . ++++||+|||.+++++.. +.+
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 7766 99999999999999999999 7 899999999999877641 221
Q ss_pred ------CCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCC---CCCCeEEEEeCC
Q 015783 308 ------GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPE---NSGKLIAAIFPS 376 (400)
Q Consensus 308 ------~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~---~~~~~vVvl~t~ 376 (400)
+...+.+.++.+++++.|+|+|+++++++|++++||+++|+++++++++++++++.. .++++||+|+||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~tG 306 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLTG 306 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-B
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcCC
Confidence 112234556677788999999999999999999999999999999999999887753 378999999986
No 75
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=6.9e-47 Score=357.25 Aligned_cols=335 Identities=20% Similarity=0.202 Sum_probs=261.5
Q ss_pred ccccccccccccCCC-----ccCCCCCcccccccchHHHHHhhccC---CCcchHHHhh-cccCCCCceecccccccCC-
Q 015783 49 TRRRILPIVASAKAG-----AAASSSSSSLYATSTREIEKEEGNDF---HGVNIAEDVT-QLIGRTPMVYLNKVTEGCV- 118 (400)
Q Consensus 49 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~l---p~~~~~~~v~-~~~~~TPL~~~~~l~~~lg- 118 (400)
..|.++..+...++. .+...+.|+.++....+|+++|.... ...+....++ ..++||||++++||.+.++
T Consensus 58 ~~~~~l~~d~~~~~~P~r~gkfgg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ 137 (477)
T KOG1395|consen 58 PQWYNLVADLSVKPPPPRFGKFGGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQT 137 (477)
T ss_pred HHHHhccCchhhcCCCccccccCCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCC
Confidence 366665444433333 37778888877777779999998843 3345555566 6678899999999999775
Q ss_pred -CeEEEEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---CcHHH
Q 015783 119 -GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLER 194 (400)
Q Consensus 119 -~~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~---~~~~~ 194 (400)
++||+|+|++||+||||+|.|..++..|++.|+ ++.|.++++|+||.|+|++|++||++|+|||..+ .++.+
T Consensus 138 ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqaln 213 (477)
T KOG1395|consen 138 GARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALN 213 (477)
T ss_pred CCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHH
Confidence 899999999999999999999999999999998 8899999999999999999999999999999874 46788
Q ss_pred HHHHHHcCCEEEEeCC-CCChhhHHHHHHHHHHhC-CCceeeC-----CCCChHHHHHHHHhHHHHHHhhh----CCCCC
Q 015783 195 RILLRAFGAEIILTDP-EKGLRGALDKAEEIVLNT-PNAYMFQ-----QFDNMANLKIHFDSTGPEIWEDT----LGCVD 263 (400)
Q Consensus 195 ~~~l~~~GA~V~~~~~-~~~~~~a~~~a~~~a~~~-~~~~~~~-----~~~~~~~~~~g~~ti~~Ei~~Ql----~~~pD 263 (400)
+.+|+.+||+|+.+++ ..+..++.+++.+++..+ +..+|+. ++--|..+...+.+|+.|...|. +..||
T Consensus 214 vfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD 293 (477)
T KOG1395|consen 214 VFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPD 293 (477)
T ss_pred HHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCC
Confidence 9999999999998875 345778888888776543 2334432 22234455568899999987776 45699
Q ss_pred EEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCcc--------ccCCCC----------------------------
Q 015783 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV--------ISGENA---------------------------- 307 (400)
Q Consensus 264 ~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~--------l~~g~~---------------------------- 307 (400)
+||.|+|||+|.+|++.-|.. ...+++|+||..+-+. ++.+.+
T Consensus 294 ~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGL 372 (477)
T KOG1395|consen 294 AVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGL 372 (477)
T ss_pred eEEEeccCCCccccccchhhc-cchhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCC
Confidence 999999999999999877765 4468889988766432 222222
Q ss_pred ---CCCc--hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCh
Q 015783 308 ---GYVP--SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYI 382 (400)
Q Consensus 308 ---~~~~--~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~ 382 (400)
+.-| ..+......+++.|+|.|++++.++|++.|||++.+++.||+++..++++.. .+++.||+.+||+|+|++
T Consensus 373 dYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGdkDv 451 (477)
T KOG1395|consen 373 DYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGDKDV 451 (477)
T ss_pred CCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCCchH
Confidence 1111 1122223347899999999999999999999999999999999999888875 578999999999999877
Q ss_pred hHHhhHHHH
Q 015783 383 PTVLFRSIY 391 (400)
Q Consensus 383 ~~~~~~~~~ 391 (400)
.. +++++
T Consensus 452 qS--~~kyL 458 (477)
T KOG1395|consen 452 QS--VAKYL 458 (477)
T ss_pred HH--HHHhc
Confidence 54 45544
No 76
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=3e-46 Score=368.47 Aligned_cols=277 Identities=21% Similarity=0.196 Sum_probs=228.3
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCC--CcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCC--ChHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEPTT--GNTGLGIA 172 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~npt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~ass--GN~g~AlA 172 (400)
.++..+++|||++++.|++.+|.+||+|+|++||+ ||||+|++.+++..+++.|. ++|+++|+ ||||.|+|
T Consensus 8 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~alA 82 (331)
T PRK03910 8 RLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQTA 82 (331)
T ss_pred CccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHHH
Confidence 57788999999999999988889999999999997 69999999999999999884 56787753 89999999
Q ss_pred HHHHHcCCeEEEEeCCCCcH--------HHHHHHHHcCCEEEEeCCCCChhh-HHHHHHHHHHhCCCce-eeCCCCChHH
Q 015783 173 FVAAVKGYKLIVTMPASTNL--------ERRILLRAFGAEIILTDPEKGLRG-ALDKAEEIVLNTPNAY-MFQQFDNMAN 242 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~--------~~~~~l~~~GA~V~~~~~~~~~~~-a~~~a~~~a~~~~~~~-~~~~~~~~~~ 242 (400)
++|+.+|++|+||||...++ .++..|+.+||+|+.++.+.+..+ +.+.+.++.++.+..+ +..++.|+.+
T Consensus 83 ~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 162 (331)
T PRK03910 83 AAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALG 162 (331)
T ss_pred HHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchh
Confidence 99999999999999998765 456899999999999986522223 2344555555433233 3467788888
Q ss_pred HHHHHHhHHHHHHhhhCC---CCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC--------------C
Q 015783 243 LKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------------E 305 (400)
Q Consensus 243 ~~~g~~ti~~Ei~~Ql~~---~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~--------------g 305 (400)
+ .||.+++.||++|+++ .||+||+|+|+||+++|++.+|++++++++||||||++++.+.. +
T Consensus 163 ~-~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g 241 (331)
T PRK03910 163 A-LGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLG 241 (331)
T ss_pred H-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcC
Confidence 5 6889999999999963 69999999999999999999999999999999999998765421 1
Q ss_pred CC---CCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehh-HHHHHHHHHHHhcCCCC-CCCeEEEEeCCCCC
Q 015783 306 NA---GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGIS-SGAAAAAAISLARRPEN-SGKLIAAIFPSFGE 379 (400)
Q Consensus 306 ~~---~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~-sgaa~aaa~~l~~~~~~-~~~~vVvl~t~~G~ 379 (400)
.+ ....+.+.++++|+.+.|+|+|+++++++|++++||++||+ +|+++++++++.+++.. ++++||+|+||+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~tGG~~ 320 (331)
T PRK03910 242 LPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIHTGGAP 320 (331)
T ss_pred CCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEECCChH
Confidence 11 11222355677889999999999999999999999999997 99999999998876543 57899999998654
No 77
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=4.2e-46 Score=364.52 Aligned_cols=275 Identities=20% Similarity=0.160 Sum_probs=222.7
Q ss_pred ccCCCCceecccccccCCCeEEEEeCCCCCC--CcchhhhHHHHHHHHHHcCCCCCCCcEEEEe--CCChHHHHHHHHHH
Q 015783 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAA 176 (400)
Q Consensus 101 ~~~~TPL~~~~~l~~~lg~~i~~K~E~~npt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~AlA~aa~ 176 (400)
...+|||+++++|++..|.+||+|+|++||+ ||||+|++.+++..++++| .++|+++ |+||||.|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g-----~~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKG-----ADTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcC-----CCEEEEcCCchhHHHHHHHHHHH
Confidence 4568999999999988889999999999998 9999999999999999998 4688888 45999999999999
Q ss_pred HcCCeEEEEeCCCC-cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHH----hCC-CceeeCCCCChHHHHHHHHhH
Q 015783 177 VKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL----NTP-NAYMFQQFDNMANLKIHFDST 250 (400)
Q Consensus 177 ~~Gl~~~Vvvp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~----~~~-~~~~~~~~~~~~~~~~g~~ti 250 (400)
.+|++|+||||... +..+..+++.+||+|+.++... +.+..+.+.++++ +.+ .+++..++.|+.++ .||.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAEE-YFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGT-LGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECchh-hhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHH-HHHHHH
Confidence 99999999999965 4556777899999999998532 3344444444433 222 23455778888886 577789
Q ss_pred HHHHHhhhCC--CCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC--------------CCCCCCchhh
Q 015783 251 GPEIWEDTLG--CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------------ENAGYVPSIL 314 (400)
Q Consensus 251 ~~Ei~~Ql~~--~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~--------------g~~~~~~~~l 314 (400)
++||++|+++ +||+||+|+|+||+++|++.+||+++++++||||||+.+.+... +.+....+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999964 79999999999999999999999999999999999876532110 0111223334
Q ss_pred hhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehh-HHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCCh
Q 015783 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVGIS-SGAAAAAAISLARRPENSGKLIAAIFPSFGERYI 382 (400)
Q Consensus 315 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~-sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~ 382 (400)
..+..+..+.|+|+|+++++++|++++||++||. +|+++++++++.++...++++||+++||+....+
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~tGG~~g~~ 305 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIHTGGISGLF 305 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEECCCccccc
Confidence 4566778899999999999999999999999995 9999999998876654557889999999765543
No 78
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=5.5e-46 Score=362.99 Aligned_cols=267 Identities=21% Similarity=0.217 Sum_probs=221.6
Q ss_pred CCceecccccccC--CCeEEEEeCCCCCC---CcchhhhHHHHHHHHHHcCCCCCCCcEEEEe--CCChHHHHHHHHHHH
Q 015783 105 TPMVYLNKVTEGC--VGNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAAV 177 (400)
Q Consensus 105 TPL~~~~~l~~~l--g~~i~~K~E~~npt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~AlA~aa~~ 177 (400)
|||+++++|++.+ +.+||+|+|++||+ ||||+|++.+++..++++|. ++|+++ |+||||.|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999999887 57999999999998 56699999999999999984 678888 579999999999999
Q ss_pred cCCeEEEEeCCCCc--------HHHHHHHHHcCCEEEEeCCCCC--hhhHHHHHHHHHHhCCC-cee-eCCC-CChHHHH
Q 015783 178 KGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKG--LRGALDKAEEIVLNTPN-AYM-FQQF-DNMANLK 244 (400)
Q Consensus 178 ~Gl~~~Vvvp~~~~--------~~~~~~l~~~GA~V~~~~~~~~--~~~a~~~a~~~a~~~~~-~~~-~~~~-~~~~~~~ 244 (400)
+|++|+||||.+.+ ..|+.+|+.+||+|+.++.+.. ..++++++.+...+..+ .++ ..++ +|+.++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGG- 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccH-
Confidence 99999999999876 4689999999999999986521 22334444444443322 343 4454 488885
Q ss_pred HHHHhHHHHHHhhhCC---CCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC--------------CC-
Q 015783 245 IHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------------EN- 306 (400)
Q Consensus 245 ~g~~ti~~Ei~~Ql~~---~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~--------------g~- 306 (400)
.||.+++.||++|+++ .||+||+|+|+||+++|++.+|++.++++|||+|||.+++.+.. +.
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 6999999999999964 69999999999999999999999999999999999999876532 11
Q ss_pred CCCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeeh-hHHHHHHHHHHHhcCCC-CCCCeEEEEeCCC
Q 015783 307 AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGI-SSGAAAAAAISLARRPE-NSGKLIAAIFPSF 377 (400)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p-~sgaa~aaa~~l~~~~~-~~~~~vVvl~t~~ 377 (400)
.+..++.+..+++++.+.|+|+|++++++++++++||++|| ++|++++++.++++++. .++++||+|+||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~TGG 307 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIHLGG 307 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Confidence 11234456667888999999999999999999999999999 59999999999988754 3578999999984
No 79
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.5e-45 Score=364.36 Aligned_cols=279 Identities=20% Similarity=0.159 Sum_probs=229.8
Q ss_pred HhhcccCCCCceecccccccCC--CeEEEEeCCCCCC---CcchhhhHHHHHHHHHHcCCCCCCCcEEEEe--CCChHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGL 169 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg--~~i~~K~E~~npt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~ 169 (400)
++.+.+++|||++++++++.+| .+||+|+|++||+ ||||+|.+.+++.+++++|. .+|+++ |+||||+
T Consensus 8 ~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g~ 82 (337)
T PRK12390 8 RYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHTR 82 (337)
T ss_pred ccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHHH
Confidence 6778899999999999998888 7999999999987 77899999999999999994 677877 7799999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCc--------HHHHHHHHHcCCEEEEeCCCC--ChhhHHHHHHHHHHhCCCcee-eCCCC
Q 015783 170 GIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYM-FQQFD 238 (400)
Q Consensus 170 AlA~aa~~~Gl~~~Vvvp~~~~--------~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~~~~-~~~~~ 238 (400)
|+|++|+.+|++|+|||+..++ ..++.+++.+||+|+.++.+. .+.++++.+.+.+++..+..| +..+.
T Consensus 83 alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (337)
T PRK12390 83 QVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGA 162 (337)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcC
Confidence 9999999999999999876543 336779999999999998742 234677777777766444444 44443
Q ss_pred ChHH-HHHHHHhHHHHHHhh---hCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCC---------
Q 015783 239 NMAN-LKIHFDSTGPEIWED---TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE--------- 305 (400)
Q Consensus 239 ~~~~-~~~g~~ti~~Ei~~Q---l~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g--------- 305 (400)
+.+. ...||.++++||++| ++++||+||+|+|+||+++|++.+|++.++++|||+|||++++.+...
T Consensus 163 ~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~ 242 (337)
T PRK12390 163 SDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNT 242 (337)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHH
Confidence 3322 235899999999998 445799999999999999999999999999999999999998766431
Q ss_pred -----CCC-C--CchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehh-HHHHHHHHHHHhcCCC-CCCCeEEEEeC
Q 015783 306 -----NAG-Y--VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGIS-SGAAAAAAISLARRPE-NSGKLIAAIFP 375 (400)
Q Consensus 306 -----~~~-~--~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~-sgaa~aaa~~l~~~~~-~~~~~vVvl~t 375 (400)
... . ..+.+..+.+++.+.|+|+|++++++++++++||++||+ ||+++++++++.+++. .++++||+++|
T Consensus 243 a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~ht 322 (337)
T PRK12390 243 AELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHL 322 (337)
T ss_pred HHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEeC
Confidence 000 1 122355678899999999999999999999999999997 9999999999998765 46789999999
Q ss_pred CCCCC
Q 015783 376 SFGER 380 (400)
Q Consensus 376 ~~G~k 380 (400)
|+-..
T Consensus 323 gg~~~ 327 (337)
T PRK12390 323 GGVPA 327 (337)
T ss_pred CChHh
Confidence 97543
No 80
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=3.4e-45 Score=361.67 Aligned_cols=278 Identities=22% Similarity=0.201 Sum_probs=229.7
Q ss_pred HhhcccCCCCceecccccccCCC--eEEEEeCCCCCC---CcchhhhHHHHHHHHHHcCCCCCCCcEEEEe--CCChHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVG--NVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGL 169 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~--~i~~K~E~~npt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~ 169 (400)
++.+.+++|||+++++|++.+|. +||+|+|++||+ ||||+|.+.+++.+++++|. .+|+++ ++||||+
T Consensus 7 ~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~g~ 81 (337)
T TIGR01274 7 RYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQTR 81 (337)
T ss_pred ccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcchHHH
Confidence 67789999999999999998874 999999999986 77799999999999999994 677876 5599999
Q ss_pred HHHHHHHHcCCeEEEEeCCCCc--------HHHHHHHHHcCCEEEEeCCCC--ChhhHHHHHHHHHHhCCCc-eeeCCCC
Q 015783 170 GIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNA-YMFQQFD 238 (400)
Q Consensus 170 AlA~aa~~~Gl~~~Vvvp~~~~--------~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~~-~~~~~~~ 238 (400)
|+|++|+.+|++|+||||+..+ ..|+.+|+.+||+|+.++.+. ...+++..+.+.+++.++. +++..+.
T Consensus 82 alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~ 161 (337)
T TIGR01274 82 QVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGC 161 (337)
T ss_pred HHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCC
Confidence 9999999999999999998542 589999999999999998642 1235666777766665333 5555543
Q ss_pred C--hHHHHHHHHhHHHHHHhhh---CCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCC-------
Q 015783 239 N--MANLKIHFDSTGPEIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN------- 306 (400)
Q Consensus 239 ~--~~~~~~g~~ti~~Ei~~Ql---~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~------- 306 (400)
+ +.. ..|+.++++||.+|+ +..||+||+|+|+||+++|++.+|++.++++|||+|||++++.+....
T Consensus 162 ~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~ 240 (337)
T TIGR01274 162 SDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARN 240 (337)
T ss_pred CCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 3 333 358999999999996 347999999999999999999999999999999999999997653210
Q ss_pred -------CCCCc---hhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehh-HHHHHHHHHHHhcCCC-CCCCeEEEEe
Q 015783 307 -------AGYVP---SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGIS-SGAAAAAAISLARRPE-NSGKLIAAIF 374 (400)
Q Consensus 307 -------~~~~~---~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~-sgaa~aaa~~l~~~~~-~~~~~vVvl~ 374 (400)
....+ +.+...+.++.+.|+|+|+++++++|++++|++++|. +|+++++++++.+++. .++++||+++
T Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv~~h 320 (337)
T TIGR01274 241 TAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVLYAH 320 (337)
T ss_pred HHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEEEEe
Confidence 01111 3456677889999999999999999999999999997 9999999999998765 4678999999
Q ss_pred CCCCCC
Q 015783 375 PSFGER 380 (400)
Q Consensus 375 t~~G~k 380 (400)
||+-..
T Consensus 321 tGG~~~ 326 (337)
T TIGR01274 321 LGGAPA 326 (337)
T ss_pred CCChhh
Confidence 995443
No 81
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-44 Score=360.74 Aligned_cols=300 Identities=21% Similarity=0.148 Sum_probs=258.8
Q ss_pred cccchHHHHHhhccCCCcchHHHhhcccCCCCceecccccccCCC---eEEEEeCCCCCCCcchhhhHHHHHHHHHHcCC
Q 015783 75 ATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG---NVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151 (400)
Q Consensus 75 ~~~~~~l~~~~~~~lp~~~~~~~v~~~~~~TPL~~~~~l~~~lg~---~i~~K~E~~nptGSfK~Rga~~~~~~a~~~G~ 151 (400)
...+..+|+ |.+++|.. ....+++.++.||+++.+++...+|. ++|+|.|++|||||||||++...+..+.+.|.
T Consensus 49 ~~~~~~~~~-~~~~lp~~-~~~~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~ 126 (411)
T COG0498 49 LSYPELAWR-YLELLPVG-EIPAVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA 126 (411)
T ss_pred ccccchHHH-HHHHCCCC-CcchhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC
Confidence 345667788 99999975 45578999999999999999988883 59999999999999999999999999999982
Q ss_pred CCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCC
Q 015783 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN 230 (400)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~ 230 (400)
.+|+++|+||+|.|+|.++++.|++|.|++|.+ ++..|+.+|..+|++++.++++ ++++.+.+.+++.+. +
T Consensus 127 -----~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~ 198 (411)
T COG0498 127 -----KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-G 198 (411)
T ss_pred -----CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-C
Confidence 489999999999999999999999999999998 9999999999999999999987 889999999998865 5
Q ss_pred ceeeCCCCChHHHHHHHHhHHHHHHhhhCC-CCCEEEEecCCChhHHhHHHHHHhcCC------CcEEEEEeCCCCcccc
Q 015783 231 AYMFQQFDNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVIS 303 (400)
Q Consensus 231 ~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~-~pD~vv~pvG~Gg~~aGi~~~~k~~~~------~~rvi~Vep~~~~~l~ 303 (400)
+++....-||..+ +||+|+++||.+|+++ .||+|++|+|+||++.|+|.+|++..+ -+++.+||++++.++.
T Consensus 199 ~~~~~nsiNp~rl-egq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~ 277 (411)
T COG0498 199 LLSAVNSINPYRL-EGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGV 277 (411)
T ss_pred ceeeccccCHHHh-hhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchh
Confidence 5777777788884 7999999999999984 799999999999999999999998753 4788999999987664
Q ss_pred CC------CCCC--------Cchhh------hhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCC
Q 015783 304 GE------NAGY--------VPSIL------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRP 363 (400)
Q Consensus 304 ~g------~~~~--------~~~~l------~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~ 363 (400)
.. .+.+ .|..+ ..+....++.|||+|++++.+++++.+|++++|+||+++++++++.++.
T Consensus 278 ~~~~~~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~ 357 (411)
T COG0498 278 YAWKEGRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKI 357 (411)
T ss_pred hhcccccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhh
Confidence 31 2211 12111 1223355899999999999999999999999999999999999998763
Q ss_pred CCCCCeEEEEeCCCCCCChhHH
Q 015783 364 ENSGKLIAAIFPSFGERYIPTV 385 (400)
Q Consensus 364 ~~~~~~vVvl~t~~G~k~~~~~ 385 (400)
..+++++|+++|++|.|+.+.+
T Consensus 358 i~~~~~vV~v~Tg~~~K~~~~v 379 (411)
T COG0498 358 IDPDETVVLVLTGHGLKFPDTV 379 (411)
T ss_pred cCCCCeEEEEecCCcccChhHH
Confidence 3577899999999999999974
No 82
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=1.3e-42 Score=342.04 Aligned_cols=278 Identities=21% Similarity=0.232 Sum_probs=219.7
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCCC--CcchhhhHHHHHHHHHHcCCCCCCCcEEE--EeCCChHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLV--EPTTGNTGLGIA 172 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~npt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv--~assGN~g~AlA 172 (400)
++.+.+++|||++++++++..|.+||+|+|++||+ ||||+|++.+++.++.++|. ++|+ ++|+||||.|+|
T Consensus 14 ~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~g~alA 88 (329)
T PRK14045 14 RVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNHAFVTG 88 (329)
T ss_pred CcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHHHHHHH
Confidence 67888999999999999988889999999999996 89999999999999999984 5566 588899999999
Q ss_pred HHHHHcCCeEEEEeCCCCcHH-HHHHHHHcCCEEEEeCCCCC---hhhHHHHHHHHHHhCCCcee-eCCCCChHHHHHHH
Q 015783 173 FVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKG---LRGALDKAEEIVLNTPNAYM-FQQFDNMANLKIHF 247 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~~GA~V~~~~~~~~---~~~a~~~a~~~a~~~~~~~~-~~~~~~~~~~~~g~ 247 (400)
++|+.+|++|+||||...+.. +..+++.+||+|+.++...+ .+.+.+.+.++.++.+..++ ..++.|+.++. ||
T Consensus 89 ~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~-g~ 167 (329)
T PRK14045 89 LAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL-GY 167 (329)
T ss_pred HHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH-HH
Confidence 999999999999999875433 55678999999998874322 22445555555555434454 46667888864 55
Q ss_pred HhHHHHHHhhhC---CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCc-cccC-------------CC-CCC
Q 015783 248 DSTGPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-VISG-------------EN-AGY 309 (400)
Q Consensus 248 ~ti~~Ei~~Ql~---~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~-~l~~-------------g~-~~~ 309 (400)
.+...||++|+. .++|+||+|+|+||+++|++.+++..+++++||+|+|.+.. .+.+ +. ...
T Consensus 168 ~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 247 (329)
T PRK14045 168 VRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKV 247 (329)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 545559999996 37999999999999999999999999999999999997632 1211 00 011
Q ss_pred -CchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeeh-hHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChh
Q 015783 310 -VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGI-SSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIP 383 (400)
Q Consensus 310 -~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p-~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~ 383 (400)
.+. +.+...+++..++ +|+++++++|+++|||+++| .+|++++++++++++.. .+++||+|+||+-...++
T Consensus 248 ~~~~-~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~-~~~~iv~ihtGG~~g~~~ 320 (329)
T PRK14045 248 QEPE-LYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGE-LGEKILFIHTGGISGTFH 320 (329)
T ss_pred cceE-ecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCC-CCCCEEEEECCCcccccc
Confidence 121 2233347777777 69999999999999999999 89999999999998753 378999999997665443
No 83
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=3.9e-32 Score=276.24 Aligned_cols=261 Identities=15% Similarity=0.108 Sum_probs=204.3
Q ss_pred CCCceecccccccCCCeEEEEeCCCCCCCcchhhhHHH---HHHHHHHcCCCCCCCcEEEEeCCChHHHHH-HHHHHHcC
Q 015783 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYS---MITDAEESGDITPGKTVLVEPTTGNTGLGI-AFVAAVKG 179 (400)
Q Consensus 104 ~TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~---~~~~a~~~G~~~~g~~~vv~assGN~g~Al-A~aa~~~G 179 (400)
.+||.+++ .++|+..-.++||||||||++.. .+.++++ |. ..+|+++|+||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37887764 26898888899999999999988 7888877 43 5789999999999998 78899999
Q ss_pred CeEEEEeCCC-CcHHHHHHHHHc-CCEEE--EeCCCCChhhHHHHHHHHHHhC-----CCceeeCCCCChHHHHHHHHhH
Q 015783 180 YKLIVTMPAS-TNLERRILLRAF-GAEII--LTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDST 250 (400)
Q Consensus 180 l~~~Vvvp~~-~~~~~~~~l~~~-GA~V~--~~~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~~~~~~~~g~~ti 250 (400)
++|+|++|++ +++.++.+|..+ |++|+ .+++ +++++...+.++..+. -+++..+. .|+..+ +||.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRL-LAQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHH-HHHHHH
Confidence 9999999996 899999999999 99884 5555 4888888887766541 13333444 477774 799999
Q ss_pred HHHHHhhhCC---CCCEEEEecCCChhHHhHHHHHHhcC-CCcEEEEEeCCCCcccc----CCCC------C--------
Q 015783 251 GPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVIS----GENA------G-------- 308 (400)
Q Consensus 251 ~~Ei~~Ql~~---~pD~vv~pvG~Gg~~aGi~~~~k~~~-~~~rvi~Vep~~~~~l~----~g~~------~-------- 308 (400)
++|+.+|+++ .||+|++|+|+||++.|.+.+ ++++ |-+|+|+++ ..++.+. .|.. .
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI 309 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDI 309 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhc
Confidence 9999999975 399999999999999999998 5555 556999998 4444432 1211 0
Q ss_pred CCchhhhh------------------h---ccC---------------eEEEeCHHHHHHHHHHHHHHcCCeeehhHHHH
Q 015783 309 YVPSILDV------------------Q---LLD---------------EVIKVTNDEAVNMARRLALEEGLLVGISSGAA 352 (400)
Q Consensus 309 ~~~~~l~~------------------~---~~~---------------~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa 352 (400)
..|.++.+ . .-. .++.|+|+|+.++++++++++|++++|++|++
T Consensus 310 ~~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva 389 (462)
T PRK09225 310 SVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVA 389 (462)
T ss_pred CCCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHH
Confidence 01111111 0 011 56899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 353 AAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 353 ~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
++++.++. .+++.+|++.|++|.|+.+.+.
T Consensus 390 ~aa~~~~~----~~~~~~V~l~Ta~p~Kf~~~v~ 419 (462)
T PRK09225 390 YKAAREYL----DPGEPGVVLSTAHPAKFPEVVE 419 (462)
T ss_pred HHHHHHhh----CCCCCEEEEecCCccCCHHHHH
Confidence 99997762 3557899999999999988765
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=2.8e-31 Score=270.14 Aligned_cols=262 Identities=14% Similarity=0.080 Sum_probs=203.7
Q ss_pred CCceecccccccCCCeEEEEeCCCCCCCcchhhhHHHH---HHHHHHc--CCCCCCCcEEEEeCCChHHHHH-HHHHHHc
Q 015783 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSM---ITDAEES--GDITPGKTVLVEPTTGNTGLGI-AFVAAVK 178 (400)
Q Consensus 105 TPL~~~~~l~~~lg~~i~~K~E~~nptGSfK~Rga~~~---~~~a~~~--G~~~~g~~~vv~assGN~g~Al-A~aa~~~ 178 (400)
+||.++.. ++|++...++||||||||++..+ +.+++++ | ..+|+++|+||+|.|+ +.++...
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~-----~~~Il~ATSGdTG~Aa~aaf~~~~ 155 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNE-----RITILVATSGDTGSAAIEGFRGKP 155 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCC-----CeEEEEcCCCcHHHHHHHHHhCcC
Confidence 78877652 78999999999999999998876 6666654 4 5789999999999994 8889999
Q ss_pred CCeEEEEeCCC-CcHHHHHHHHHcCC---EEEEeCCCCChhhHHHHHHHHHHhC-----CCceeeCCCCChHHHHHHHHh
Q 015783 179 GYKLIVTMPAS-TNLERRILLRAFGA---EIILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDS 249 (400)
Q Consensus 179 Gl~~~Vvvp~~-~~~~~~~~l~~~GA---~V~~~~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~~~~~~~~g~~t 249 (400)
|++|+|++|.+ +++.++.+|..+|+ +++.++++ ++++...+.++..+. -+++.++. -|+..+ ++|.+
T Consensus 156 gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~--fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~~Q~~ 231 (460)
T cd01560 156 NVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGD--FDDCQSLVKALFADEDFNKKLKLSSANS-INWARI-LAQIV 231 (460)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCC--HHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHH-HHHHH
Confidence 99999999996 89999999999996 77777765 888888887776542 12333333 466664 79999
Q ss_pred HHHHHHhhhCC----CCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccc----cCCCC-------C------
Q 015783 250 TGPEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI----SGENA-------G------ 308 (400)
Q Consensus 250 i~~Ei~~Ql~~----~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l----~~g~~-------~------ 308 (400)
.++|+.+|+++ .||.|+||+|+||++.|.+.+.+.-.|-.|+|+++.... .+ ..|.. .
T Consensus 232 yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~-il~~~~~~G~y~~~~~~~~T~spam 310 (460)
T cd01560 232 YYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEND-VLRRFFKTGRYDRRESLKQTLSPAM 310 (460)
T ss_pred HHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCCh-HHHHHHHcCCCcCCCCCCCCcCchh
Confidence 99999999964 589999999999999999998655345678999765432 22 12211 0
Q ss_pred --CCchhh---hhh--c-------------------------------cCeEEEeCHHHHHHHHHHHHHHcCCeeehhHH
Q 015783 309 --YVPSIL---DVQ--L-------------------------------LDEVIKVTNDEAVNMARRLALEEGLLVGISSG 350 (400)
Q Consensus 309 --~~~~~l---~~~--~-------------------------------~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sg 350 (400)
..|.++ ... . .-.++.|+|+|+.++++++++++|++++|++|
T Consensus 311 dI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtA 390 (460)
T cd01560 311 DILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTA 390 (460)
T ss_pred hcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHH
Confidence 011111 110 0 01468999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHh
Q 015783 351 AAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVL 386 (400)
Q Consensus 351 aa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~ 386 (400)
++++++.++.++ +++.+|++.|++|.|+.+.+.
T Consensus 391 va~aa~~~~~~~---~~~~~V~l~Ta~p~Kf~~~v~ 423 (460)
T cd01560 391 VGVRAAERVRKS---PGTPGVVLSTAHPAKFPEAVK 423 (460)
T ss_pred HHHHHHHHHHhc---cCCCEEEEecCCcccCHHHHH
Confidence 999999887654 456789999999999988764
No 85
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.97 E-value=4.5e-29 Score=234.18 Aligned_cols=278 Identities=21% Similarity=0.181 Sum_probs=226.9
Q ss_pred HhhcccCCCCceecccccccCCCeEEEEeCCCCC--CCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCC--ChHHHHHH
Q 015783 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEP--CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT--GNTGLGIA 172 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~~~lg~~i~~K~E~~np--tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~ass--GN~g~AlA 172 (400)
++..-.++||+.+++++++.+|.+||+|+|++.+ .|.+|.|...+.+.+|.++| .+++++.++ .||.+++|
T Consensus 8 R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g-----~dTlvT~GgiQSNh~r~tA 82 (323)
T COG2515 8 RMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKG-----ADTLVTYGGIQSNHVRQTA 82 (323)
T ss_pred ccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcC-----CcEEEEecccchhHHHHHH
Confidence 5566677999999999999999999999999965 48899999999999999999 689999999 99999999
Q ss_pred HHHHHcCCeEEEEeCCCC----cHHHHHHHHHcCCEEEEeCCCCCh--hhHHHHHHHHHHhCCCceeeCCCCC--hHHHH
Q 015783 173 FVAAVKGYKLIVTMPAST----NLERRILLRAFGAEIILTDPEKGL--RGALDKAEEIVLNTPNAYMFQQFDN--MANLK 244 (400)
Q Consensus 173 ~aa~~~Gl~~~Vvvp~~~----~~~~~~~l~~~GA~V~~~~~~~~~--~~a~~~a~~~a~~~~~~~~~~~~~~--~~~~~ 244 (400)
++|+++|++|+.++-... -..++...+.+|++++.++...+. +.-.+...+..++.++..|+.+-.. |.- .
T Consensus 83 avA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-~ 161 (323)
T COG2515 83 AVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-A 161 (323)
T ss_pred HHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-c
Confidence 999999999999996654 123566778899999999876554 4445555666666677777655443 222 3
Q ss_pred HHHHhHHHHHHhhhC--CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCC-------------CC-C
Q 015783 245 IHFDSTGPEIWEDTL--GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE-------------NA-G 308 (400)
Q Consensus 245 ~g~~ti~~Ei~~Ql~--~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g-------------~~-~ 308 (400)
.||...+.||.+|.. -++|+||+++|+|||.+|+..++...+++.+|||+.....+...+. .. +
T Consensus 162 lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~ 241 (323)
T COG2515 162 LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGS 241 (323)
T ss_pred ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 499999999999996 5799999999999999999999999899999999998876543320 01 1
Q ss_pred CCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehh-HHHHHHHHHHHhcCCCC-CCCeEEEEeCCCCCC
Q 015783 309 YVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGIS-SGAAAAAAISLARRPEN-SGKLIAAIFPSFGER 380 (400)
Q Consensus 309 ~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~-sgaa~aaa~~l~~~~~~-~~~~vVvl~t~~G~k 380 (400)
...+.+..++.-..+.+.++|.+++.+.+++.|||..+|- ++.++.+++++++++.. ++..|+.|++|+-..
T Consensus 242 ~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~g 315 (323)
T COG2515 242 EADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAPG 315 (323)
T ss_pred CceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCccc
Confidence 2233444555666788999999999999999999999999 99999999999988764 456689999987644
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.93 E-value=2.4e-24 Score=201.25 Aligned_cols=280 Identities=20% Similarity=0.226 Sum_probs=227.6
Q ss_pred HhhcccCCCCceeccccc----cc----CCCeEEEEeCCCCC-CCcchhhhHHHHHHH-----HHHcCCCCCC-------
Q 015783 97 DVTQLIGRTPMVYLNKVT----EG----CVGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPG------- 155 (400)
Q Consensus 97 ~v~~~~~~TPL~~~~~l~----~~----lg~~i~~K~E~~np-tGSfK~Rga~~~~~~-----a~~~G~~~~g------- 155 (400)
.-+.++..+||++.+.+- ++ ...++|+|++++-| +||.|.||..+.+.. |.+.|.+...
T Consensus 71 ~~~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~ 150 (443)
T COG3048 71 AATGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILL 150 (443)
T ss_pred cccCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhh
Confidence 346677889999876443 32 23699999999998 699999998887643 5567765332
Q ss_pred ---------CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHH
Q 015783 156 ---------KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (400)
Q Consensus 156 ---------~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (400)
.-.|...|+||.|.++..+.+.+|++++|.|..+....|.+++|..|.+|+....+ |..++++-++.++
T Consensus 151 ~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~D--Y~~AVeeGRk~a~ 228 (443)
T COG3048 151 SEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQD--YGVAVEEGRKEAE 228 (443)
T ss_pred cHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecch--hhHHHHHhhhhhc
Confidence 22688999999999999999999999999999999999999999999999999876 7789999999999
Q ss_pred hCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCC--------CCCEEEEecCCChhHHhHHHHHHhc-CCCcEEEEEeCC
Q 015783 227 NTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPA 297 (400)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~--------~pD~vv~pvG~Gg~~aGi~~~~k~~-~~~~rvi~Vep~ 297 (400)
.++..||++. +|+.+...||.+.+.-+..|+.. .|-.|..|||.||.-.|++.++|.. +.++.++-+||.
T Consensus 229 ~DP~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPt 307 (443)
T COG3048 229 SDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPT 307 (443)
T ss_pred cCCceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCC
Confidence 9999999877 44555457999999999999842 3668999999999999999999986 467999999999
Q ss_pred CCccccC----------------------------CCCCCCchhhhhhccCeEEEeCHHHHHHHHHHHHHHcCCeeehhH
Q 015783 298 ERSVISG----------------------------ENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVGISS 349 (400)
Q Consensus 298 ~~~~l~~----------------------------g~~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~la~~eGi~~~p~s 349 (400)
.+|||-- |+|+.....+....++..++|+|+..++...+|++.|||.++|++
T Consensus 308 hsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSa 387 (443)
T COG3048 308 HSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSA 387 (443)
T ss_pred CChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchh
Confidence 9999842 233334455667789999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcCC------------CCCCCeEEEEeCCCCC
Q 015783 350 GAAAAAAISLARRP------------ENSGKLIAAIFPSFGE 379 (400)
Q Consensus 350 gaa~aaa~~l~~~~------------~~~~~~vVvl~t~~G~ 379 (400)
-+++++-.++.+.. .....+.+|-.||+|.
T Consensus 388 lAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~M 429 (443)
T COG3048 388 LAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGM 429 (443)
T ss_pred hhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCc
Confidence 88887777665321 1244566777777654
No 87
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=94.86 E-value=0.054 Score=49.74 Aligned_cols=65 Identities=8% Similarity=0.105 Sum_probs=56.1
Q ss_pred EEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCCCChhHHhh
Q 015783 322 VIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSFGERYIPTVLF 387 (400)
Q Consensus 322 ~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~G~k~~~~~~~ 387 (400)
+..||++|+.+++...+++.+++++|++|++.-...+...+. .+.-.++++.|.+..||.+.+..
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt-~ps~~~i~lstAh~aKFa~AV~~ 212 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKT-QPSIPYICLSTAHPAKFAEAVNA 212 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhcc-CCCCceEEecccChhhhhHHHHH
Confidence 456999999999999999999999999999999999887764 34667888999999998886643
No 88
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.79 E-value=4.7 Score=33.29 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHH
Q 015783 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHF 247 (400)
Q Consensus 168 g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~ 247 (400)
|..+...|+.+|.+++++.+ .+.|++.++.+||+.+....+.+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~---------------------------------- 45 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDD---------------------------------- 45 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSS----------------------------------
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccc----------------------------------
Confidence 55666667777744444433 45566777777766555443210
Q ss_pred HhHHHHHHhhhC-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCC
Q 015783 248 DSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297 (400)
Q Consensus 248 ~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~ 297 (400)
...+|.+-.+ ..+|+||-|+|++..+.-....+ .+.-+++.+--.
T Consensus 46 --~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l---~~~G~~v~vg~~ 91 (130)
T PF00107_consen 46 --FVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL---RPGGRIVVVGVY 91 (130)
T ss_dssp --HHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE---EEEEEEEEESST
T ss_pred --cccccccccccccceEEEEecCcHHHHHHHHHHh---ccCCEEEEEEcc
Confidence 1123333333 25899999999877665444433 344455555443
No 89
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=84.17 E-value=6.2 Score=35.09 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcCCeE-EEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH-HHHHhCCCceeeCCCCChHHHHH
Q 015783 168 GLGIAFVAAVKGYKL-IVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE-EIVLNTPNAYMFQQFDNMANLKI 245 (400)
Q Consensus 168 g~AlA~aa~~~Gl~~-~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~-~~a~~~~~~~~~~~~~~~~~~~~ 245 (400)
|..+..+++.+|.++ .-+.+.+.-..-...+...|-+|.++++. .+..+++. .+.++.++.-.+..+..+.. ..
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~---~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~ 88 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS---EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EE 88 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hh
Confidence 478889999999887 34434344455566777788999999876 34444444 34455555444322221111 11
Q ss_pred HHHhHHHHHHhhhC-CCCCEEEEecCCCh
Q 015783 246 HFDSTGPEIWEDTL-GCVDIFVAAIGTGG 273 (400)
Q Consensus 246 g~~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg 273 (400)
-. .+|.+++. ..||+|+++.|+.-
T Consensus 89 ~~----~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 89 EE----EAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred hH----HHHHHHHHHcCCCEEEEECCCCH
Confidence 12 23444442 36999999999865
No 90
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=82.64 E-value=26 Score=32.44 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHH
Q 015783 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGAL 218 (400)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~ 218 (400)
+..++....+-|. ...=++..+=.+.-++...++.++ ++.|=...-.++...++....||+.+++++-.
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~------ 95 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN------ 95 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC------
Confidence 4445555556664 344466677788899999999999 66665555568889999999999999988642
Q ss_pred HHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHH--------------hhhC-CCCCEEEEecCCChhH
Q 015783 219 DKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW--------------EDTL-GCVDIFVAAIGTGGTI 275 (400)
Q Consensus 219 ~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~--------------~Ql~-~~pD~vv~pvG~Gg~~ 275 (400)
.+..+.+.+. +..++.+...|.-+. --...|.+++ +.+. .-+++-|+|+||=++-
T Consensus 96 ~ev~~~a~~~-~ip~~PG~~TptEi~-~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~ 165 (211)
T COG0800 96 PEVAKAANRY-GIPYIPGVATPTEIM-AALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLD 165 (211)
T ss_pred HHHHHHHHhC-CCcccCCCCCHHHHH-HHHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCCHH
Confidence 3344555554 677777766665432 1122333332 2222 2467788888875544
No 91
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.60 E-value=31 Score=34.26 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=43.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH-cCCEEEEeCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTDP 210 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~-~GA~V~~~~~ 210 (400)
+++..++|.-|...+..++.+|...+|++ +..+.|+++.+. .|++++....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCc
Confidence 79999999999999999999999998888 456889998877 7777766553
No 92
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.93 E-value=3.2 Score=36.25 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=33.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA 203 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA 203 (400)
|+.-++||||.|+|...+..|.+++++.++. ...+.++..+-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~~ 43 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETRQ 43 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHTS
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhCC
Confidence 6778999999999999999999999998854 55555555444
No 93
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=79.37 E-value=26 Score=35.60 Aligned_cols=57 Identities=23% Similarity=0.189 Sum_probs=37.3
Q ss_pred CCCCCCcchhhhHHHHHHHHHHcCCCCC-CCcEEEEeCCChHHHH--HHHHHHHcCCeEEEEe
Q 015783 127 SMEPCRSVKDRIGYSMITDAEESGDITP-GKTVLVEPTTGNTGLG--IAFVAAVKGYKLIVTM 186 (400)
Q Consensus 127 ~~nptGSfK~Rga~~~~~~a~~~G~~~~-g~~~vv~assGN~g~A--lA~aa~~~Gl~~~Vvv 186 (400)
+.+|.|..+ ....++.+.+.+|.+.. ++..||+..++..|.| +|.+. ..|.+.+++.
T Consensus 14 ~~hp~gc~~--~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCEA--NVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHHH--HHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 345666443 35668888888888743 3566666666777777 55566 6788766654
No 94
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=79.28 E-value=22 Score=34.17 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=41.9
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.+.+.+|.+.++...+|.-|.++...|+.+|.+++++.. ++.+.+.++.+|++-+.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi 193 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVF 193 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4455666666667666799999999999999998554433 45688888889986444
No 95
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.20 E-value=68 Score=34.49 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=64.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (400)
.+++..+.|..|+.+|..-...|++++++=. ++.+.+.++.+|.+++.-+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 4688889999999999888888888766632 355666677777666543321
Q ss_pred CCChHHHHHHHHhHHHHHHhhhC-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEe
Q 015783 237 FDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (400)
Q Consensus 237 ~~~~~~~~~g~~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Ve 295 (400)
+ .|++++.+ .+.|.+|++++.--...-+....|+.+|+.+|++--
T Consensus 453 -----~---------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 453 -----Q---------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred -----C---------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 0 12333332 356777877777655555667778878888887744
No 96
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=78.60 E-value=14 Score=36.49 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=40.0
Q ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
++.+.+|. ++|.-|...+..++..|.+++++......+.|++.++.+|++.+
T Consensus 172 ~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 172 NPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 44555444 67999999999999999976666554456788899999999863
No 97
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=78.01 E-value=24 Score=35.70 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=41.8
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
.+...+.++.+.+| .++|.-|..++..|+.+|.+.+++.. ..+.+++..+.+|++.
T Consensus 178 ~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~ 233 (393)
T TIGR02819 178 AVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCET 233 (393)
T ss_pred HHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeE
Confidence 33445566656555 77899999999999999998766432 2467888999999974
No 98
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.81 E-value=71 Score=34.52 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=38.5
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
..++..+.|..|+.+|..-...|++++++ +.++.+.+.++.+|.+|+.-+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GD 450 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGD 450 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEe
Confidence 46888999999999998888888887766 335667777777887776544
No 99
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=76.49 E-value=18 Score=32.09 Aligned_cols=116 Identities=18% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCeEEEEeCC-CCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH-HHHHhCCCceee---CCCCChHH
Q 015783 168 GLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDKAE-EIVLNTPNAYMF---QQFDNMAN 242 (400)
Q Consensus 168 g~AlA~aa~~~Gl~~~Vvvp~-~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~-~~a~~~~~~~~~---~~~~~~~~ 242 (400)
|..+..+++.+|.+..--++. +.-..-.+.+...|.+|.++++. .+..+.+. .+.++.++...+ ++|.++..
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~---~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK---PEVLEKAAERLRARYPGLKIVGYHHGYFGPEE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCcEEEEecCCCCChhh
Confidence 467888999999873323322 22234455566678999999875 34444444 344555555443 23322211
Q ss_pred HHHHHHhHHHHHHhhhC-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEe
Q 015783 243 LKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (400)
Q Consensus 243 ~~~g~~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Ve 295 (400)
-.+|.+++. ..||+|+++.|.---=. .....++..+..-+++|=
T Consensus 88 --------~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~vG 132 (171)
T cd06533 88 --------EEEIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGVG 132 (171)
T ss_pred --------HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEec
Confidence 112555553 36999999999865332 222333334444556654
No 100
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=76.18 E-value=32 Score=31.92 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCCCCcEEEEe-CCC---hHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCC
Q 015783 142 MITDAEESGDITPGKTVLVEP-TTG---NTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGA 203 (400)
Q Consensus 142 ~~~~a~~~G~~~~g~~~vv~a-ssG---N~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA 203 (400)
-+..|...|.= .+.+|++ +.| .+..|||.+|++.|=+.+.++|+... ..-.+.|..+|.
T Consensus 31 EfISAlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 31 EFISALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHHHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 33445566642 4566666 444 36899999999999999999999654 344555655664
No 101
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=75.34 E-value=30 Score=34.00 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=39.7
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
.....+.+|.+ ++..++|..|.+++..|+.+|.+++++ +..+.+++.++.+|++.+.
T Consensus 159 ~~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i 215 (349)
T TIGR03201 159 AVQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTL 215 (349)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEe
Confidence 33444556555 455556999999999999999964333 2246788888889997544
No 102
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=75.18 E-value=20 Score=34.05 Aligned_cols=52 Identities=29% Similarity=0.375 Sum_probs=38.2
Q ss_pred CCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
.++.+ ++..++|.-|..++..|+.+|.+.++++ +..+.|++..+.+|++.+.
T Consensus 119 ~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 119 LKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 35545 4445779999999999999999755555 3456788888999986433
No 103
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.53 E-value=45 Score=31.44 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=34.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
+..+|+.++|.-|.++|......|.+++++... ..+...+...|.+++.++
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~D 55 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLD 55 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEcc
Confidence 456788888999999999888889887766442 334444444555544443
No 104
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=74.23 E-value=31 Score=31.41 Aligned_cols=67 Identities=24% Similarity=0.206 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHc--CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-HcCCEEE
Q 015783 137 RIGYSMITDAEES--GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEII 206 (400)
Q Consensus 137 Rga~~~~~~a~~~--G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~-~~GA~V~ 206 (400)
+|....+..+.+. +......++++..+.||.|..+|......|.+++++ . ..+.++..+. .+|++.+
T Consensus 7 ~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 7 YGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence 5667777766554 222222357888888999999999999999987744 2 2344444443 3476543
No 105
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.66 E-value=24 Score=32.80 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=44.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|.-|.++|......|.+++++..........+.+...|.++..+..+.+..+.+..+.+
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 56788888899999999999899999888765422222334455567777666555433444444433
No 106
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.51 E-value=23 Score=32.89 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=45.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.++|--|.++|......|.+++++-... .+.....++..|.+++.+..+-+..+.++.+.+.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 5678888889999999999999999987764322 2333455666788887665544334445544443
No 107
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.85 E-value=21 Score=33.12 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=38.9
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
+..+|+.++|.-|.++|......|.+++++-...........+...|.++..+..+
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 64 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTAD 64 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEe
Confidence 56788888899999999999999998776644322223334555668787655544
No 108
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=72.76 E-value=26 Score=29.88 Aligned_cols=70 Identities=23% Similarity=0.259 Sum_probs=46.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc----HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN----LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~----~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (400)
..+|+.+++.-|+++|......|-..++++..+.+ ......++..|.++..+..+....+.++.+.+...
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 45788888999999999988887777766665521 22334556778888887765443444444444433
No 109
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=72.13 E-value=29 Score=33.98 Aligned_cols=60 Identities=20% Similarity=0.133 Sum_probs=45.3
Q ss_pred HcCCCCCCCcEEEEeCC---ChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeC
Q 015783 148 ESGDITPGKTVLVEPTT---GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (400)
Q Consensus 148 ~~G~~~~g~~~vv~ass---GN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~ 209 (400)
..|.+. ..+|+-.+. +|.+.++...++++|++++++.|++. ++..+..++..|++|..++
T Consensus 144 ~~g~l~--g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 144 EFGRLD--GLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred HhCCCC--CCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 345443 235555666 59999999999999999999999974 5555667777899987765
No 110
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.00 E-value=87 Score=33.05 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=40.9
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
..++..++|.-|.+.+..|+.+|-+++++ +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 56899999999999999999999853333 346789999999999976554
No 111
>PRK08628 short chain dehydrogenase; Provisional
Probab=71.41 E-value=27 Score=32.35 Aligned_cols=67 Identities=18% Similarity=0.111 Sum_probs=45.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+..+|--|.++|..-...|.+++++............++..|.+++.+..+.+..+.+..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAV 74 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 5677888889999999999989999987765443223334556667888776665543334444443
No 112
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=71.20 E-value=68 Score=34.06 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=60.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (400)
.+++..+.|+.|+.+|..-+..|.+++++=. ++.+.+.++.+|.+++.-+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~------------------------- 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA------------------------- 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC-------------------------
Confidence 5788889999999988888878887765533 245566666666665543321
Q ss_pred CCChHHHHHHHHhHHHHHHhhhC-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEe
Q 015783 237 FDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (400)
Q Consensus 237 ~~~~~~~~~g~~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Ve 295 (400)
+ .|++++.+ .+.|.+++.++.-....-+....++++++.++++-.
T Consensus 470 --~------------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 470 --N------------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred --C------------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 0 12222222 346777777776544444555566777788888753
No 113
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.15 E-value=30 Score=32.00 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=45.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|.-|.+++......|.+++++..... .......++..|.+++.+..+.+..+.++.+.+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGID 76 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHH
Confidence 56788888899999999999999998776654321 123344566678888776655433344444443
No 114
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=70.86 E-value=42 Score=32.37 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=42.0
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.+.+.+|.+.++...+|--|.+++..|+.+|.+++++.. +..+.+.++.+|++.+.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi 188 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAF 188 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 4455666666666666799999999999999997655543 35678888889986544
No 115
>PRK08589 short chain dehydrogenase; Validated
Probab=70.75 E-value=23 Score=33.34 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=44.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.++|--|.++|......|.+++++-...........++..|.++..+..+.+..+.++.+.+.
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 567888888889999999988899988777544211222445556677776665543333444444443
No 116
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=70.62 E-value=46 Score=32.35 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=41.2
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH-cCCEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEII 206 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~-~GA~V~ 206 (400)
+.+.+.+|.+.++...+|.-|.++...|+.+|.++++... ...+.+.++. +|++-+
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~v 201 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDA 201 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCcee
Confidence 3455667677777776799999999999999998555433 3567777877 898543
No 117
>PRK12743 oxidoreductase; Provisional
Probab=70.57 E-value=23 Score=32.90 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=44.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+|+.++|.-|.++|......|.+++++...+.. ......++.+|.+++.+..+.+..+.++.+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 71 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQAL 71 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 467888888999999999999999988776543322 2224556677888877665543333444433
No 118
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=70.31 E-value=23 Score=26.76 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=38.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----c----HHHHHHHHHcCCEEEE
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-----N----LERRILLRAFGAEIIL 207 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-----~----~~~~~~l~~~GA~V~~ 207 (400)
++.-++|..|.-+|.+.+.+|.+++++...+. + ..-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 67889999999999999999999999986642 1 2234567777888765
No 119
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=70.18 E-value=38 Score=31.37 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=44.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+.++|.-|.++|......|.+++++- ..........++..|.++..+..+.+..+.++.+.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 76 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGIN-IVEPTETIEQVTALGRRFLSLTADLRKIDGIPALL 76 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEec-CcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 5678888889999999999999999876552 22233445556666777776655543333444433
No 120
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=70.03 E-value=27 Score=32.33 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+.++|.-|.++|......|.+++++-....+ ......++..|.++..+..+.+..+.++.+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHH
Confidence 567888888999999999999899986655332111 122344556677887765554333445544443
No 121
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=69.89 E-value=23 Score=32.49 Aligned_cols=98 Identities=20% Similarity=0.228 Sum_probs=59.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (400)
+|...+|+.|..++.+....|.++.+++... +......++..|++++..+-+ -.+.+..+.+ .-+..+.+.+..
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~~--~~~~l~~al~---g~d~v~~~~~~~ 75 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADYD--DPESLVAALK---GVDAVFSVTPPS 75 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-TT---HHHHHHHHT---TCSEEEEESSCS
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecccC--CHHHHHHHHc---CCceEEeecCcc
Confidence 5677789999999999998999999998765 455667788899999865532 2234433332 222334444443
Q ss_pred ChHHHHHHHHhHHHHHHhhhCCCCCEEE
Q 015783 239 NMANLKIHFDSTGPEIWEDTLGCVDIFV 266 (400)
Q Consensus 239 ~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv 266 (400)
++... ..+..+ .+.....+ +.++|
T Consensus 76 ~~~~~-~~~~~l-i~Aa~~ag--Vk~~v 99 (233)
T PF05368_consen 76 HPSEL-EQQKNL-IDAAKAAG--VKHFV 99 (233)
T ss_dssp CCCHH-HHHHHH-HHHHHHHT---SEEE
T ss_pred hhhhh-hhhhhH-HHhhhccc--cceEE
Confidence 33332 233444 34444443 66665
No 122
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.44 E-value=96 Score=30.60 Aligned_cols=159 Identities=18% Similarity=0.093 Sum_probs=81.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHH-HH-------HHHHcCCEEEEeCCCCChhhHHHHHHHHHHhC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RI-------LLRAFGAEIILTDPEKGLRGALDKAEEIVLNT 228 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~-~~-------~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~ 228 (400)
+.|..-++|..|.++|..+...|++++++=+......+ +. .+...|...-.......+...++ +.+ ++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~---~av-~~ 83 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIE---ACV-AD 83 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHH---HHh-cC
Confidence 46888899999999999999999999999765322111 11 11112210000000000000111 111 22
Q ss_pred CCceeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCCC
Q 015783 229 PNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAG 308 (400)
Q Consensus 229 ~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~~ 308 (400)
-+++.-.-.++... ...+..||.+.+ ++|.|+...-++-...-+...+ ...-|+++..+-..+.+
T Consensus 84 aDlViEavpE~l~v----K~~lf~~l~~~~--~~~aIlaSnTS~l~~s~la~~~---~~p~R~~g~HffnP~~~------ 148 (321)
T PRK07066 84 ADFIQESAPEREAL----KLELHERISRAA--KPDAIIASSTSGLLPTDFYARA---THPERCVVGHPFNPVYL------ 148 (321)
T ss_pred CCEEEECCcCCHHH----HHHHHHHHHHhC--CCCeEEEECCCccCHHHHHHhc---CCcccEEEEecCCcccc------
Confidence 23343333333221 233335555554 4788777666644444444433 34568999888654322
Q ss_pred CCchhhhhhccCeEEE--eCHHHHHHHHHHHHHHcC
Q 015783 309 YVPSILDVQLLDEVIK--VTNDEAVNMARRLALEEG 342 (400)
Q Consensus 309 ~~~~~l~~~~~~~~~~--V~d~e~~~a~~~la~~eG 342 (400)
+| +.+++. -++.|+++.+..|.+.-|
T Consensus 149 -~p-------LVEVv~g~~T~~e~~~~~~~f~~~lG 176 (321)
T PRK07066 149 -LP-------LVEVLGGERTAPEAVDAAMGIYRALG 176 (321)
T ss_pred -Cc-------eEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 11 111211 367778888888877666
No 123
>PRK07109 short chain dehydrogenase; Provisional
Probab=69.28 E-value=24 Score=34.64 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=46.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+..+|--|.++|......|.+++++...... ......++..|++++.+..+.+..+.++.+.+.+
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 467788888999999999999999987776543211 2234456677988887766544345555554433
No 124
>PRK08226 short chain dehydrogenase; Provisional
Probab=69.18 E-value=29 Score=32.25 Aligned_cols=68 Identities=22% Similarity=0.096 Sum_probs=42.9
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|.-|.++|......|.+++++-...........+...|.++..+..+.+..+.++.+.+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 74 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIK 74 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 56788888899999999999989998766643321122233444457777666555433344444433
No 125
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=69.15 E-value=54 Score=32.01 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=41.2
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+...+.++.+.++ .++|..|.++...|+.+|...++.+.. .+.+...++.+|++.+
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 223 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVV 223 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 4455566655555 777999999999999999876666554 3567778888898654
No 126
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=69.11 E-value=35 Score=33.15 Aligned_cols=57 Identities=28% Similarity=0.425 Sum_probs=41.0
Q ss_pred HHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.+.+.+.++.+.++...+|..|.+++..|+.+|.+++++... . ++..++.+|++.+
T Consensus 169 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~ 225 (350)
T cd08274 169 MLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTV 225 (350)
T ss_pred HHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEE
Confidence 3445556666676776666999999999999999996555432 2 6677778888643
No 127
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=68.72 E-value=37 Score=31.16 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=44.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|.-|.++|......|.+++++.. .........++..+.++..+..+.+..+.+..+.+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGR-SEPSETQQQVEALGRRFLSLTADLSDIEAIKALVD 72 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcC-chHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 56777777899999999999999998776653 22233445566678777766655443444444443
No 128
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=68.31 E-value=46 Score=32.79 Aligned_cols=57 Identities=26% Similarity=0.481 Sum_probs=42.6
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEe
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~ 208 (400)
.+.+.+|.+.++.+.+|.-|..+-..|+.+|...++.+.. ..+.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s---~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS---SEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC---HHHHHHHHhcCCCEEEc
Confidence 3556667888888889999999999999999844444332 35666889999976654
No 129
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.28 E-value=44 Score=32.87 Aligned_cols=57 Identities=25% Similarity=0.321 Sum_probs=40.7
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.+.+.+|.+.+|. ++|--|.+++..|+.+|.+.++.+.. .+.+++.++.+|++.+.
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 44555666666665 67999999999999999875554432 45688888889986433
No 130
>PRK06114 short chain dehydrogenase; Provisional
Probab=67.87 E-value=44 Score=30.95 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=45.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+.++|--|.++|......|.++++....... ....+.++..|.++..+..+.+..+.++.+.+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~ 80 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVART 80 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 567888888889999999998899988777543321 2234456666877766655543334455554433
No 131
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.21 E-value=46 Score=30.48 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=45.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|.-|+++|......|.++++....+.. ......++..|.++..+..+.+..+.+..+.+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 567888888999999999999999987765443322 12334566678888777665433344444433
No 132
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=65.88 E-value=1.4e+02 Score=29.38 Aligned_cols=56 Identities=27% Similarity=0.374 Sum_probs=39.5
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.+.+.+|.+.+|. ++|.-|.+++..|+.+|..-++++.. .+.+++.++.+|++-+
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~ 233 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDF 233 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcE
Confidence 44556666666665 67999999999999999853333322 4577888888998533
No 133
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=65.43 E-value=38 Score=30.03 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=46.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHh
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-----TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLN 227 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-----~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~ 227 (400)
.|++.+.|..|..+|..-...|-.-+|++... .....++.++..|++|.....+-+..+.++.+.+.+.+
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~ 77 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQ 77 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHT
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHh
Confidence 56777789999999999777776555665443 33457788899999999887665444566666555443
No 134
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=65.30 E-value=72 Score=30.87 Aligned_cols=58 Identities=26% Similarity=0.441 Sum_probs=38.2
Q ss_pred HcCCCCCC--CcEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCcHHHHHHHHH-cCCEEEEe
Q 015783 148 ESGDITPG--KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRA-FGAEIILT 208 (400)
Q Consensus 148 ~~G~~~~g--~~~vv~assGN~g~AlA~aa~~~Gl-~~~Vvvp~~~~~~~~~~l~~-~GA~V~~~ 208 (400)
+.+.+.++ .+.++...+|.-|.++...|+.+|. +++++.. ++.+.+.++. +|++-+..
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~ 207 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAIN 207 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEE
Confidence 33444444 4555655569999999999999998 5555433 3567777765 89865443
No 135
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=65.04 E-value=68 Score=31.30 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=39.2
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
.+...+.++.+.++. ++|..|.+++..|+.+|++.++++. .+..+.+.++.+|++.+.
T Consensus 165 l~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i 222 (351)
T cd08233 165 VRRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVL 222 (351)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 344445565565555 5789999999999999995444443 245667777778886543
No 136
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.00 E-value=42 Score=32.39 Aligned_cols=70 Identities=21% Similarity=0.166 Sum_probs=46.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..||+.++|.-|.++|......|.++++.-.... .......++..|.+++.+..+....+.++.+.+.+
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~ 84 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATA 84 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 56788888899999999998889998766533221 12334566777989887776644334454444433
No 137
>PRK12937 short chain dehydrogenase; Provisional
Probab=64.99 E-value=50 Score=30.08 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=45.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+++.++|.-|.++|......|.+++++...... ....+.+..+|.++..+..+....+.++++.+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 467888888999999999999999987776543321 12334556678888877665443344444443
No 138
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=64.75 E-value=58 Score=31.07 Aligned_cols=55 Identities=24% Similarity=0.314 Sum_probs=37.7
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.+.+|.+.++...+|.-|.+++..|+.+|.+.+++... ..+++.++.+|++
T Consensus 132 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~ 186 (324)
T cd08292 132 LDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIG 186 (324)
T ss_pred HHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCC
Confidence 334455666666666667999999999999999986666443 3455555566764
No 139
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=64.61 E-value=42 Score=31.52 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=43.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|.-|.++|......|.+++++-.... .......++..|.++..+..+....+.+..+.+
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 46778888899999999999999998777654321 122234455568887766655432334444433
No 140
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.53 E-value=39 Score=30.72 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=40.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHH-HHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~-~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+++.++|..|.+++......|.+++++.........+ ..+...| +++.+..+....+.++.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~ 73 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIE 73 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHH
Confidence 5678888889999999999999999888776543222111 2233333 45555544333344444433
No 141
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.42 E-value=71 Score=33.69 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=41.0
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~ 210 (400)
..++.-+.|..|.+.+..++.+|..++++-. ...++++.+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~---~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDT---RPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCeEEeccc
Confidence 4678888999999999999999987555433 45688889999999877763
No 142
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=64.30 E-value=41 Score=31.36 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=44.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|.-|.++|......|.+++++-..... ......++..|++++.+..+.+..+.++.+.+
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVS 79 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 567888888999999999999999987666322211 12233455568888776665443444444443
No 143
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=64.24 E-value=43 Score=30.67 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=44.9
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.++|--|.++|......|.++++....... +.....++..|.++..+..+....+.++.+.+.
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 77 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEE 77 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 567888888999999999988899887765433211 122344556788888776664434444444443
No 144
>PRK06139 short chain dehydrogenase; Provisional
Probab=64.02 E-value=33 Score=33.77 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=45.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (400)
+..+|+..+|--|.++|......|.+++++...... ......++..|+++..+..|-+..+.++.+.+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 466777777899999999999999987766433211 12234566789888766554433455555554443
No 145
>PRK06128 oxidoreductase; Provisional
Probab=63.91 E-value=56 Score=31.28 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=45.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-C--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-T--NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|--|.++|......|.++++..... . .......++..|.+++.+..+....+.++.+.+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 5678888889999999999999999887654321 1 123345667778888776655433344444433
No 146
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=63.35 E-value=79 Score=31.10 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=40.5
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-HcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~-~~GA~V~~ 207 (400)
+.+.+.+|.+.+|...+|.-|.++...|+.+|.+++++.. +..+.+.++ .+|++-+.
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~---~~~k~~~~~~~lGa~~vi 209 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG---SSQKVDLLKNKLGFDEAF 209 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhcCCCEEE
Confidence 3455666666666666699999999999999987544332 456777776 68986544
No 147
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=63.24 E-value=36 Score=31.28 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeC
Q 015783 164 TGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTD 209 (400)
Q Consensus 164 sGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~ 209 (400)
++.-|.++|......|.++++.-..... .......+.+|.+++.++
T Consensus 5 s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D 52 (241)
T PF13561_consen 5 SSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCD 52 (241)
T ss_dssp TSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESC
T ss_pred CCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeec
Confidence 4567777777777777776666544321 112233344666654444
No 148
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=63.08 E-value=64 Score=31.96 Aligned_cols=57 Identities=26% Similarity=0.429 Sum_probs=40.0
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+...+.+|.+.+| .++|.-|..++..|+.+|.+-++++. ..+.+++.++.+|++.+.
T Consensus 185 ~~~~i~~g~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 241 (371)
T cd08281 185 NTAGVRPGQSVAV-VGLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATV 241 (371)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEe
Confidence 3444566666566 56799999999999999985344432 356788888889986443
No 149
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=62.76 E-value=57 Score=28.63 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=53.9
Q ss_pred CCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC---------CCcHHHHHHHHH
Q 015783 130 PCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA---------STNLERRILLRA 200 (400)
Q Consensus 130 ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~---------~~~~~~~~~l~~ 200 (400)
|+--+-++.....+..|.+.|. +..+|..++|-++.-++-+..- .+++++|.-. .++++-++.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4545667778888899999996 5666667779888766665442 2888877633 256778888999
Q ss_pred cCCEEEEe
Q 015783 201 FGAEIILT 208 (400)
Q Consensus 201 ~GA~V~~~ 208 (400)
.|++|..-
T Consensus 82 rGa~v~~~ 89 (186)
T COG1751 82 RGAKVLTQ 89 (186)
T ss_pred cCceeeee
Confidence 99999764
No 150
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=62.55 E-value=20 Score=31.81 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=71.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
.++|..-+-|+-|+++|..++.+|++++++-|...+.. .....|.+. .+ +++ +..+. +.+.++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~~----l~e-------ll~~a-Div~~~ 98 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--VS----LDE-------LLAQA-DIVSLH 98 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--SS----HHH-------HHHH--SEEEE-
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--ee----hhh-------hcchh-hhhhhh
Confidence 35788889999999999999999999999988754333 334444422 11 222 22332 344332
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhH--HhHHHHHHhcCCCcEEEEEeCC
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKMMNKEIKVVGVEPA 297 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~--aGi~~~~k~~~~~~rvi~Vep~ 297 (400)
--.++.+ ...+..|.++++ +++.+++-+|-|+.+ ..+..++++ ....-.+.+..
T Consensus 99 ~plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~ 154 (178)
T PF02826_consen 99 LPLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDVF 154 (178)
T ss_dssp SSSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-
T ss_pred hcccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEECC
Confidence 2222222 234567888887 478999999999987 456666665 23444454443
No 151
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=62.48 E-value=59 Score=29.44 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=44.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+++.++|..|.+++......|.+++++.....+ ......++..+.+++.+..+....+.+..+.+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVD 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 467888888999999999988889987666543321 12233455567888777655433444444433
No 152
>PRK05876 short chain dehydrogenase; Provisional
Probab=62.08 E-value=48 Score=31.38 Aligned_cols=68 Identities=13% Similarity=0.116 Sum_probs=43.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|......|.+++++...... ......++..|.++..+..+-+..+.+..+.+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 567888888999999999999999986655422111 11233455668787766655433344444443
No 153
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=61.96 E-value=67 Score=31.13 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=39.3
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
.+...+.+|.+.+|. ++|.-|.+++..|+.+|.+-++++. ..+.+++.++.+|++.+.
T Consensus 156 l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i 213 (339)
T cd08239 156 LRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVI 213 (339)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEE
Confidence 333345566666665 6799999999999999998333332 245677778888986443
No 154
>PRK08703 short chain dehydrogenase; Provisional
Probab=61.31 E-value=85 Score=28.59 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=25.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
++.+++.++|.-|.++|......|.+++++-
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 5678888889999999998888888766554
No 155
>PRK06172 short chain dehydrogenase; Provisional
Probab=61.29 E-value=53 Score=30.24 Aligned_cols=68 Identities=22% Similarity=0.246 Sum_probs=44.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|.-|.++|......|.+++++.-.... ......++..|.++..+..+.+..+.+..+.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 567888888999999999999999987666533221 22244556678777766555433344444443
No 156
>PRK08303 short chain dehydrogenase; Provisional
Probab=61.08 E-value=58 Score=31.56 Aligned_cols=69 Identities=25% Similarity=0.192 Sum_probs=43.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-----------cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-----------NLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-----------~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.+++--|.++|......|.+++++-.... .....+.++..|.+++.+..+-...+.++.+.+.
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 56677777788999999999889998777643211 1223345566787776665544333444444443
No 157
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=61.01 E-value=42 Score=32.78 Aligned_cols=56 Identities=23% Similarity=0.169 Sum_probs=39.3
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+...+.+|.+.+| .+.|.-|.+++..|+.+|.+.+++.. .+.|++.++.+||+.+.
T Consensus 159 ~~~~~~~g~~VlV-~G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 159 LRASLPPGGRLGL-YGFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HhcCCCCCCEEEE-EcCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3445566655554 45688999999999999987444333 35678899999997543
No 158
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=60.87 E-value=1.6e+02 Score=28.33 Aligned_cols=52 Identities=33% Similarity=0.370 Sum_probs=36.6
Q ss_pred CCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
.+.++...++. ++|.-|.+++..|+.+|+..++++ ...+.+...++.+|+.+
T Consensus 164 ~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 164 QVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred CCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 34455566665 689999999999999998434444 23456777778889864
No 159
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=60.81 E-value=91 Score=30.18 Aligned_cols=53 Identities=36% Similarity=0.542 Sum_probs=38.5
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
...+.++...++ .++|..|.++...|+..|++.++.+... +.+.+.++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 334445556666 5689999999999999999865555443 4677778888984
No 160
>PRK12744 short chain dehydrogenase; Provisional
Probab=60.65 E-value=52 Score=30.46 Aligned_cols=68 Identities=25% Similarity=0.193 Sum_probs=43.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC--C---cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS--T---NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~--~---~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+..+|.-|.++|..-...|.+++++.... . .....+.++..|.++..+..+.+..+.++.+.+
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 81 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFD 81 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH
Confidence 4678888889999999999888999966665321 1 112234455668787766555433344444443
No 161
>PRK08643 acetoin reductase; Validated
Probab=60.56 E-value=62 Score=29.80 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=43.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.++|.-|.++|......|.+++++-...... .....+...|.++..+..+.+..+.++.+.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4678888889999999999999998866654332111 12234455677777666554434444444433
No 162
>PRK07478 short chain dehydrogenase; Provisional
Probab=60.54 E-value=51 Score=30.39 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=43.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|..-...|.+++++.....+ ......++..|.++..+..+....+.++.+.+
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVA 75 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 467788788899999999988899987666433211 11234456678777766655433344444443
No 163
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=60.33 E-value=51 Score=30.13 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=43.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+.++|.-|.++|......|.+++++..... .......++..|.+++....+....+.++.+.
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAF 72 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 45688888899999999999999988766543221 12234455567888876655543334444443
No 164
>PRK08278 short chain dehydrogenase; Provisional
Probab=59.95 E-value=66 Score=30.28 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=44.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--------HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--------~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+..+|--|.++|......|.+++++.....+ ....+.++..|.+++.+..+.+..+.+..+.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 467788888999999999999999988777644321 11234556678887776555433344444433
No 165
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=59.50 E-value=57 Score=29.73 Aligned_cols=69 Identities=17% Similarity=0.062 Sum_probs=42.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+.++|--|.++|......|.+++++..... .......++..|+++..+..+....+.++++.+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46677777799999999999889988666543321 1223344556688877665543223344444443
No 166
>PRK09134 short chain dehydrogenase; Provisional
Probab=59.46 E-value=72 Score=29.50 Aligned_cols=70 Identities=17% Similarity=0.211 Sum_probs=44.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH--HHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
++.+|+..+|.-|.+++......|.++++....+... .-...++..|.++..+..+.+..+.+..+.+.+
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 81 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARA 81 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4678888889999999999999999887765432211 122334455888876655543334555554443
No 167
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=59.22 E-value=43 Score=32.74 Aligned_cols=95 Identities=18% Similarity=0.235 Sum_probs=58.6
Q ss_pred ecccccccCCCeEEEEeCC-CCCCCcchhhhHHHHHHHHH-HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 109 YLNKVTEGCVGNVAAKLES-MEPCRSVKDRIGYSMITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 109 ~~~~l~~~lg~~i~~K~E~-~nptGSfK~Rga~~~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
.++.|++.-+..||==+-+ ..|+- +..-+.-.+ ..|.+ .|.+.+.+.-+.|-+.++-.+|+.+|++++|..
T Consensus 112 ~ve~lA~~s~VPViNgLtD~~HP~Q------~LADl~Ti~E~~g~l-~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~ 184 (310)
T COG0078 112 TLEELAKYSGVPVINGLTDEFHPCQ------ALADLMTIKEHFGSL-KGLKLAYVGDGNNVANSLLLAAAKLGMDVRIAT 184 (310)
T ss_pred HHHHHHHhCCCceEcccccccCcHH------HHHHHHHHHHhcCcc-cCcEEEEEcCcchHHHHHHHHHHHhCCeEEEEC
Confidence 4566777777777722222 24543 112122222 33433 224556666668999999999999999999999
Q ss_pred CCCCcH--HHHHH----HHHcCCEEEEeCC
Q 015783 187 PASTNL--ERRIL----LRAFGAEIILTDP 210 (400)
Q Consensus 187 p~~~~~--~~~~~----l~~~GA~V~~~~~ 210 (400)
|++..+ .-+.. ....|++|.++..
T Consensus 185 Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d 214 (310)
T COG0078 185 PKGYEPDPEVVEKAKENAKESGGKITLTED 214 (310)
T ss_pred CCcCCcCHHHHHHHHHHHHhcCCeEEEecC
Confidence 997533 22222 3445999988864
No 168
>PRK08862 short chain dehydrogenase; Provisional
Probab=59.07 E-value=54 Score=30.14 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=34.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTD 209 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~ 209 (400)
+..+|+..++.-|.++|......|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 466777777889999999999999986665332211 112334555676665544
No 169
>PRK07454 short chain dehydrogenase; Provisional
Probab=58.97 E-value=55 Score=29.85 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=42.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|..|.+++......|.+++++...... ......+...+.++..+..+.+..+.+..+.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIA 75 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHH
Confidence 456788888999999999999999987776543211 12223344556677666555433344444433
No 170
>PRK12939 short chain dehydrogenase; Provisional
Probab=58.96 E-value=60 Score=29.61 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=43.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+++.++|.-|.++|......|.+++++..... .......++..|.++..+..+....+.++.+.+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56778888899999999999889998666632211 1122334555677777665554333444444443
No 171
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=58.60 E-value=64 Score=29.73 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=43.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.++|.-|.++|......|.+++++--.... ......++..|.++..+..+.+..+.++.+.+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 567888888999999999999999877665432111 122334555577777665554334445444443
No 172
>PRK07806 short chain dehydrogenase; Provisional
Probab=58.51 E-value=73 Score=29.13 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=42.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|.-|.+++......|.+++++...... ......++..|.++..+..+.+..+.+..+.+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 567788888999999999988899988776543211 11123345567777666555433344444433
No 173
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=58.49 E-value=94 Score=30.00 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=37.4
Q ss_pred CCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
.+.++...++...+|..|.+++..|+.+|++++++... +.+.+.++.+|++-
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 213 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADA 213 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 45555666777777789999999999999976555443 35666677788653
No 174
>PRK08862 short chain dehydrogenase; Provisional
Probab=58.30 E-value=1.1e+02 Score=28.17 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=47.0
Q ss_pred EEEEeCCC--CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCc--eeeCCCCChHHHHHHHHhHHHHHHhh
Q 015783 182 LIVTMPAS--TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA--YMFQQFDNMANLKIHFDSTGPEIWED 257 (400)
Q Consensus 182 ~~Vvvp~~--~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~--~~~~~~~~~~~~~~g~~ti~~Ei~~Q 257 (400)
..++...+ .-..-...+...|++|+.+..+ .+..++..+...+.+.. .+.....++ .....+..++.++
T Consensus 7 ~~lVtGas~GIG~aia~~la~~G~~V~~~~r~---~~~l~~~~~~i~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~~ 79 (227)
T PRK08862 7 IILITSAGSVLGRTISCHFARLGATLILCDQD---QSALKDTYEQCSALTDNVYSFQLKDFSQ----ESIRHLFDAIEQQ 79 (227)
T ss_pred EEEEECCccHHHHHHHHHHHHCCCEEEEEcCC---HHHHHHHHHHHHhcCCCeEEEEccCCCH----HHHHHHHHHHHHH
Confidence 44444443 3345566677789999998754 23333333323222222 222222232 2345566788888
Q ss_pred hCCCCCEEEEecCCC
Q 015783 258 TLGCVDIFVAAIGTG 272 (400)
Q Consensus 258 l~~~pD~vv~pvG~G 272 (400)
+++.+|++|.+.|.+
T Consensus 80 ~g~~iD~li~nag~~ 94 (227)
T PRK08862 80 FNRAPDVLVNNWTSS 94 (227)
T ss_pred hCCCCCEEEECCccC
Confidence 854799999998753
No 175
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.18 E-value=57 Score=31.25 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=42.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|......|.+++++...... ......+...|.++..+..+....+.+..+.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 456888888999999999988899987776544211 11223444457776666554333344544444
No 176
>PRK05867 short chain dehydrogenase; Provisional
Probab=58.16 E-value=62 Score=29.85 Aligned_cols=68 Identities=9% Similarity=0.084 Sum_probs=42.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|.-|.++|......|.+++++-..... ......++..|.++..+..+.+..+.++.+.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 567788888999999999998899986665432111 12233455567777666554333344444443
No 177
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=58.01 E-value=59 Score=31.73 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=39.7
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+...+.++.+.+|. ++|..|.++...|+.+|.+.++.+.. .+.+++.++.+|++-+
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~ 209 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQT 209 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceE
Confidence 34445555565555 68999999999999999975554432 4567777888998643
No 178
>PRK07791 short chain dehydrogenase; Provisional
Probab=57.94 E-value=68 Score=30.51 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=43.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC----------CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS----------TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~----------~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+..++--|.++|......|.+++++.... ........++..|.+++.+..+-+..+.++.+.+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDA 85 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHH
Confidence 5678888888999999999999999877764221 11122344556688877665554333444444433
No 179
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=57.88 E-value=62 Score=29.91 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=43.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|.-|.++|......|.+++++...... ......++..|.+++.+..+.+..+.++.+.+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAE 81 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 567888888999999999988899987655432111 11233445667787777665443445544443
No 180
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=57.87 E-value=79 Score=29.29 Aligned_cols=67 Identities=12% Similarity=0.139 Sum_probs=43.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+.++|.-|.++|......|.++++......+ ......++..|.++..+..+.+..+.+....
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~ 76 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLI 76 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHH
Confidence 567888888999999999999999987776554322 2223455566888776654433333444433
No 181
>PRK06194 hypothetical protein; Provisional
Probab=57.74 E-value=71 Score=30.05 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=43.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|.-|.++|......|.+++++-..... ......+...|.+++.+..+.+..+.++.+.+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 467888888999999999988899987665432111 22233444557788776665433344444443
No 182
>PRK06701 short chain dehydrogenase; Provisional
Probab=57.73 E-value=81 Score=30.10 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=44.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+..+|--|.++|......|.+++++..... .......++..|.++..+..+....+.++.+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAV 115 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHH
Confidence 46788888899999999999989998776654422 22334455667888876665543344444443
No 183
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.58 E-value=71 Score=29.06 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=43.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|..|.+++......|.+++++.....+ ......+...|.+++.+..+.+..+.+..+.+
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence 456888888999999999988899977666543211 11233455667788766655433344444444
No 184
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=57.05 E-value=64 Score=29.71 Aligned_cols=69 Identities=20% Similarity=0.108 Sum_probs=43.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..+.+..+.+..+.+.
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 567888888999999999988889987766543211 122334555676666665443333444444433
No 185
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=56.96 E-value=65 Score=29.42 Aligned_cols=68 Identities=22% Similarity=0.098 Sum_probs=43.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+++.++|.-|.++|......|.+++++...... ......++..+.++..+..+....+.++.+.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 72 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVA 72 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 567888888999999999999999987766543211 11223345557777766655433444444443
No 186
>PRK08265 short chain dehydrogenase; Provisional
Probab=56.84 E-value=80 Score=29.39 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=41.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.++|--|.++|......|.+++++-... ....+..+..|.++..+..+.+..+.+..+.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 5677888889999999999999999776663321 112223344576776665554334445444443
No 187
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=56.81 E-value=31 Score=39.20 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=28.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
.+.|+..++|-.|.+.|+..++.|++++||=
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE 336 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFE 336 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 3569999999999999999999999999994
No 188
>PRK07677 short chain dehydrogenase; Provisional
Probab=56.59 E-value=68 Score=29.56 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=41.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|.-|.++|......|.+++++...... ......++..+.+++.+..+.+..+.++.+.+
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVE 70 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 467888888999999999999999976665432211 12223344556677666554333444444443
No 189
>PRK07035 short chain dehydrogenase; Provisional
Probab=56.55 E-value=71 Score=29.34 Aligned_cols=68 Identities=21% Similarity=0.115 Sum_probs=42.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|.-|.+++......|.+++++-..... ....+.+...|.++..+..+.+..+.++.+.+
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFA 77 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 467888888999999999999999987766543211 12233444567776655544333344444443
No 190
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=56.52 E-value=93 Score=30.09 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=36.2
Q ss_pred CCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
.+.++.+.+|. ++|..|.+++..|+.+|.+.+++.. ...++..++.+|++-
T Consensus 160 ~~~~~~~vlV~-g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~ 210 (333)
T cd08296 160 GAKPGDLVAVQ-GIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHH 210 (333)
T ss_pred CCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcE
Confidence 44555555555 4899999999999999998555433 345677778888853
No 191
>PRK06949 short chain dehydrogenase; Provisional
Probab=56.52 E-value=60 Score=29.86 Aligned_cols=67 Identities=21% Similarity=0.169 Sum_probs=39.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+++.++|.-|.++|......|.+++++...... ......++..+.++..+..+.+..+.+..+.
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 77 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAV 77 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHH
Confidence 567888888999999999999999986666543211 1112234444555555544433233343333
No 192
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=56.47 E-value=68 Score=31.79 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=39.8
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.+.+.+|.+.+|. ++|.-|.+++..|+.+|.+-++.+. ..+.+++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEE
Confidence 34455666565555 6799999999999999985344432 246788888889986443
No 193
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=56.13 E-value=71 Score=29.07 Aligned_cols=68 Identities=24% Similarity=0.220 Sum_probs=44.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+++.++|.-|.+++......|.+++++.....+ ......++..|.++..+..+....+.+..+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 467788888999999999988899887666543211 22334556677777766655433344444443
No 194
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=56.09 E-value=75 Score=29.10 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=44.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+..+|.-|.++|..-...|.+++++.....+. .....++..|.++..+..+....+.+..+.+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 4678888889999999999888899887775543222 2233455568787766655433444444444
No 195
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=56.00 E-value=24 Score=37.49 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=40.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC------------------CCcHHHHHHHHHcCCEEEEe
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA------------------STNLERRILLRAFGAEIILT 208 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~------------------~~~~~~~~~l~~~GA~V~~~ 208 (400)
+.|+..++|-.|.+.|.+++..|.+++||=.. .....+++.++.+|++++.-
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 46899999999999999999999997776321 12345667788899987653
No 196
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=55.91 E-value=1.3e+02 Score=30.50 Aligned_cols=128 Identities=15% Similarity=0.159 Sum_probs=63.7
Q ss_pred EEeCCC-hHHHHHHHHHHHcCCeEEEEeCC-CCc----HHHHHHHHHcCC-EEEEeCCCCChh-hHHHHHHHHHHhCCCc
Q 015783 160 VEPTTG-NTGLGIAFVAAVKGYKLIVTMPA-STN----LERRILLRAFGA-EIILTDPEKGLR-GALDKAEEIVLNTPNA 231 (400)
Q Consensus 160 v~assG-N~g~AlA~aa~~~Gl~~~Vvvp~-~~~----~~~~~~l~~~GA-~V~~~~~~~~~~-~a~~~a~~~a~~~~~~ 231 (400)
+..|+| .+...+.+.....+++++.|.-. +.+ ....+....+|| +++.++....+. +.+-.+.+.-....|.
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg~ 81 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYEGR 81 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BTTT
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666 44555556666666887777633 332 334455677899 999887532111 1121222211112233
Q ss_pred eeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEE-ecCCChhHHhHHHHHHhcCCCcEEEE
Q 015783 232 YMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA-AIGTGGTITGTGRFLKMMNKEIKVVG 293 (400)
Q Consensus 232 ~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~-pvG~Gg~~aGi~~~~k~~~~~~rvi~ 293 (400)
|++... -.++. ...-..|+.++.+ .|+|.- |+|-|--..=.-.+++.+.|+.+|++
T Consensus 82 YpL~ts--l~Rpl--Ia~~~v~~A~~~g--a~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 82 YPLSTS--LARPL--IAKKLVEVAREEG--ADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp B--CCC--CHHHH--HHHHHHHHHHHHT---SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred cccccc--chHHH--HHHHHHHHHHHcC--CeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 333221 12221 1334456677763 676665 56777777777788888899999986
No 197
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.75 E-value=82 Score=28.88 Aligned_cols=69 Identities=25% Similarity=0.306 Sum_probs=44.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+++.++|.-|.++|..-...|.+++++.....+ ......++..+.++..+..+.+..+.+..+.+.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDA 73 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 356788888999999999988889987776533221 223444555677777665554433444444443
No 198
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=55.64 E-value=75 Score=29.49 Aligned_cols=64 Identities=19% Similarity=0.118 Sum_probs=40.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-HcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+.++|.-|.++|......|.+++++-. + ..+.+.+. .+|.++..+..+....+.++.+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r-~--~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~ 70 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDK-S--AAGLQELEAAHGDAVVGVEGDVRSLDDHKEAV 70 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeC-C--HHHHHHHHhhcCCceEEEEeccCCHHHHHHHH
Confidence 56788888899999999999999998766532 2 23333333 34666665554433333444443
No 199
>PRK07890 short chain dehydrogenase; Provisional
Probab=55.64 E-value=69 Score=29.46 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=42.9
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|--|+++|......|.+++++...... ......++..|.++..+..+.+..+.++.+.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHH
Confidence 567888888999999999999999987666432211 11223344457777666555433344444443
No 200
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=55.54 E-value=83 Score=30.45 Aligned_cols=88 Identities=15% Similarity=0.051 Sum_probs=51.4
Q ss_pred ccccCCCeEE--EEeCCCCCCCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 015783 113 VTEGCVGNVA--AKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST 190 (400)
Q Consensus 113 l~~~lg~~i~--~K~E~~nptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~ 190 (400)
..+..|..++ .++|+. ..-+-+-.+...+..+.+.-..+-..+++...+.|+.|.++|..++.+|.+++++-..
T Consensus 108 ~a~~~gi~v~~~~~~~~v--a~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~-- 183 (287)
T TIGR02853 108 LAADAGVKLIELFERDDV--AIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS-- 183 (287)
T ss_pred HHHHCCCeEEEEEeccce--EEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC--
Confidence 4555665555 444433 2222333455455555543211212357888899999999999999999876666443
Q ss_pred cHHHHHHHHHcCCEE
Q 015783 191 NLERRILLRAFGAEI 205 (400)
Q Consensus 191 ~~~~~~~l~~~GA~V 205 (400)
..+......+|.+.
T Consensus 184 -~~~~~~~~~~g~~~ 197 (287)
T TIGR02853 184 -SADLARITEMGLIP 197 (287)
T ss_pred -HHHHHHHHHCCCee
Confidence 33444555566553
No 201
>PRK06181 short chain dehydrogenase; Provisional
Probab=55.51 E-value=68 Score=29.67 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=43.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+.++|.-|.+++......|.+++++...... ......+...|.+++.+..+....+.+..+.+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 356788888999999999988899987776543211 122334455677777665554333444444443
No 202
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=55.46 E-value=89 Score=28.17 Aligned_cols=67 Identities=24% Similarity=0.184 Sum_probs=42.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+++..+|.-|..++......|.+++++....... .....++..|.++..+..+....+.+..+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALI 73 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 4678888889999999999888999965554332211 123445567888877655543333444443
No 203
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.22 E-value=1.5e+02 Score=27.92 Aligned_cols=53 Identities=36% Similarity=0.392 Sum_probs=37.1
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~-~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+...+.++...++. ++|..|.+++..|+.+|.+ .+++ .. .+.+...++.+|++
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~~-~~--~~~~~~~~~~~g~~ 176 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIAI-DR--RPARLALARELGAT 176 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-CC--CHHHHHHHHHhCCc
Confidence 34555566666666 5788999999999999998 4443 32 24566677778874
No 204
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=55.13 E-value=1.1e+02 Score=29.46 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=35.4
Q ss_pred CcEEEE-eCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEe
Q 015783 156 KTVLVE-PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (400)
Q Consensus 156 ~~~vv~-assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~ 208 (400)
.+.++. .++|..|.++...|+.+|.+.+++.. ++.+++.++.+|++-+..
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~ 194 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLN 194 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEE
Confidence 345554 57788999999999999987544433 356777788888875543
No 205
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=55.03 E-value=72 Score=29.45 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=43.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|.-|.+++......|.+++++....... .....++..|.+++.+..+.+..+.+..+.+
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALAD 80 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 5678888889999999999888999877765432211 1223445567777665554433344444433
No 206
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=54.99 E-value=95 Score=30.31 Aligned_cols=52 Identities=27% Similarity=0.299 Sum_probs=37.6
Q ss_pred CCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
.++.+.+| .++|.-|.+....|+.+|.+.++++.. .+.+++..+.+||+.+.
T Consensus 168 ~~g~~VlV-~G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi 219 (343)
T PRK09880 168 LQGKRVFV-SGVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLV 219 (343)
T ss_pred CCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 35555455 567999999999999999864444432 46788888889997554
No 207
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=54.94 E-value=1.5e+02 Score=28.34 Aligned_cols=55 Identities=25% Similarity=0.268 Sum_probs=38.9
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+.+.+.++.+.++...+|..|.+++..|+.+|++.+++.. ...++..++.+|++-
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~ 188 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQ 188 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCE
Confidence 3455556666666667799999999999999998655543 345666667788743
No 208
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.89 E-value=67 Score=29.38 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=43.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+++.++|--|.+++......|.++++...... .......++..|.+++.+..+.+..+.+..+.+
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAK 76 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHH
Confidence 46778888899999999998889998766553221 123344566778887766555433344444433
No 209
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=54.88 E-value=86 Score=29.96 Aligned_cols=56 Identities=36% Similarity=0.436 Sum_probs=39.9
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
.+.+.+.++.+.++. ++|..|.+++..|+.+|.+.+++.. .+.+++.++.+|+..+
T Consensus 148 ~~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 148 LEQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVGR---HSEKLALARRLGVETV 203 (319)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCcEE
Confidence 345556666666666 5799999999999999999444322 3567778888888653
No 210
>PRK05717 oxidoreductase; Validated
Probab=54.81 E-value=87 Score=28.86 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKA 221 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (400)
++.+|+.++|.-|.++|......|.+++++-... .......+..+.+++.+..+....+.+..+
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMDVADEAQVAAG 74 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEccCCCHHHHHHH
Confidence 5678888889999999999998998876663221 111223344566666665554333444444
No 211
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=54.43 E-value=89 Score=29.81 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=33.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
.+.++...+|..|.+++..|+.+|+++++... .+.+.+.++.+|++-
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 194 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKLGYEVVASTG---KADAADYLKKLGAKE 194 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHHcCCCE
Confidence 35555555599999999999999998554433 345677777788743
No 212
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.33 E-value=1.2e+02 Score=29.55 Aligned_cols=55 Identities=29% Similarity=0.322 Sum_probs=38.6
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+...+.++.+.++. ++|..|.+++..|+.+|.+.++.+.. ...+....+.+|++.
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 214 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATD 214 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCce
Confidence 34445555666665 67999999999999999975555433 346777778888753
No 213
>PRK06198 short chain dehydrogenase; Provisional
Probab=54.18 E-value=93 Score=28.65 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=43.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH--HHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+++..+|.-|..+|......|.+.++++...... .....+...|.++..+..+.+..+.+..+.+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVA 76 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 4677888889999999999999999844444443221 2233556678888666554433344444443
No 214
>PRK07985 oxidoreductase; Provisional
Probab=54.01 E-value=79 Score=30.24 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=43.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC-CC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA-ST--NLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~-~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+..+|.-|.++|......|.+++++-.. .. .......++..|.+++.+..+.+..+.+..+.+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 121 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHE 121 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHH
Confidence 467888888999999999999999987765322 11 1122233455677776665554334455554443
No 215
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=53.63 E-value=1.3e+02 Score=27.87 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=26.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~ 189 (400)
++...++||-|.++|..-...|.+++|--...
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 56778899999999999999998887775443
No 216
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=53.59 E-value=36 Score=33.79 Aligned_cols=56 Identities=25% Similarity=0.178 Sum_probs=43.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
....+..++|..+.-+|+.+-.++=.-.|++|.-+-......+...|++++.++-+
T Consensus 40 ~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 40 VKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 45788899999999998888433333788889988888999999999999999865
No 217
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=53.47 E-value=1.5e+02 Score=28.28 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=39.0
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.+.++.+.++...+|..|.+++..|+.+|.+.+++.. ++.+...++.+|++.+
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS---SEEKVDFCKKLAAIIL 189 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEE
Confidence 55556666666666799999999999999998655433 3566666777888533
No 218
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=53.45 E-value=1.1e+02 Score=30.03 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=57.7
Q ss_pred eEEEEeCCCCC-----CCcchhhhHHHHHHHHHHcCCCCCCCcEEEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCC-cH
Q 015783 120 NVAAKLESMEP-----CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT-GNTGLGIAFVAAVKGYKLIVTMPAST-NL 192 (400)
Q Consensus 120 ~i~~K~E~~np-----tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~ass-GN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~ 192 (400)
+-++|.+..-| |-+.-.-.|+-++.+-.+... | +.|+--++ .--|.++-..|+.+||+.+=++.... -.
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~---G-D~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNK---G-DSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCC---C-CeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 45566666433 334444467778888776553 2 34443333 45667777889999999998886643 45
Q ss_pred HHHHHHHHcCCEEEEeCC
Q 015783 193 ERRILLRAFGAEIILTDP 210 (400)
Q Consensus 193 ~~~~~l~~~GA~V~~~~~ 210 (400)
+-.++++.+||+-+..+.
T Consensus 200 el~~~Lk~lGA~~ViTee 217 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITEE 217 (354)
T ss_pred HHHHHHHHcCCceEecHH
Confidence 556788999999888763
No 219
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=53.44 E-value=1.3e+02 Score=25.04 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHHHcCCeEEEEeCC-CCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhH
Q 015783 172 AFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (400)
Q Consensus 172 A~aa~~~Gl~~~Vvvp~-~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti 250 (400)
+...+..+.+..|+... .............+.+++.=.+ .++.+++..|.+.+.+......+.+.+-|.... . .
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~---~ 77 (122)
T PF09837_consen 3 AALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-D---D 77 (122)
T ss_dssp -----TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-H---H
T ss_pred cccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-H---H
Confidence 44556678888888744 4444444435556777765433 357788988888874433456667777776542 2 2
Q ss_pred HHHHHhhhCCCCCEEEEecCCChh
Q 015783 251 GPEIWEDTLGCVDIFVAAIGTGGT 274 (400)
Q Consensus 251 ~~Ei~~Ql~~~pD~vv~pvG~Gg~ 274 (400)
-.+..+.+ ...|+|+.|+-=||.
T Consensus 78 l~~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 78 LEQAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp HHHHHHHT-TT-SEEEEEBTTSSE
T ss_pred HHHHHHHh-ccCCEEEeeccCCCE
Confidence 23444444 345999999987663
No 220
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=52.80 E-value=66 Score=29.41 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=43.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+|+.++|.-|.++|......|.++++..-.+. .......++..+.+++.+..+.+..+.++.+.
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 71 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMF 71 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHH
Confidence 35678888899999999998889988766543321 12234456667888877665543333444443
No 221
>PRK06138 short chain dehydrogenase; Provisional
Probab=52.80 E-value=91 Score=28.44 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=41.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|--|.++|......|.+++++.-.... ......+. .|.++..+..+.+..+.++++.+
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~ 73 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVD 73 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHH
Confidence 467888888999999999888889876665433211 11222333 57777766655433345554444
No 222
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=52.77 E-value=39 Score=34.63 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=38.2
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
++++..+.|.-|+.+|..++.+|.+++|+ +..+.+....+.+|++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 57899999999999999999999975553 234667788888999764
No 223
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=52.18 E-value=82 Score=31.64 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=45.1
Q ss_pred eEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCC--hhhHHHHHHHHHHhCC-CceeeCCCC-ChHHHHHHHHhHHHHHHh
Q 015783 181 KLIVTMPASTNLERRILLRAFGAEIILTDPEKG--LRGALDKAEEIVLNTP-NAYMFQQFD-NMANLKIHFDSTGPEIWE 256 (400)
Q Consensus 181 ~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~--~~~a~~~a~~~a~~~~-~~~~~~~~~-~~~~~~~g~~ti~~Ei~~ 256 (400)
+..|+...+.-..--+.++.+|-++.++.+... ..+.+++..+..++.+ .....+... ||.. ....|+.+
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~------~~v~~~~~ 77 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT------TTVMEGAA 77 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH------HHHHHHHH
Confidence 445555555444444556667877777665432 2355666666555432 122222222 2221 11123333
Q ss_pred hhC-CCCCEEEEecCCChhHH
Q 015783 257 DTL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 257 Ql~-~~pD~vv~pvG~Gg~~a 276 (400)
++. .++| +|+.+|||+.+=
T Consensus 78 ~~~~~~~D-~IiavGGGS~iD 97 (380)
T cd08185 78 LAREEGCD-FVVGLGGGSSMD 97 (380)
T ss_pred HHHHcCCC-EEEEeCCccHHH
Confidence 332 3588 567899998764
No 224
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=51.95 E-value=96 Score=28.37 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=42.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+.+|+.++|--|.++|......|.+++++-..... ......++..|.++..+..+....+.+..+.+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~ 69 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAID 69 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 45778888999999999999999876665433211 12234556678887766655433444444433
No 225
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.84 E-value=74 Score=29.51 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=43.1
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC----CC------Cc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHH
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP----AS------TN--LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp----~~------~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (400)
+..+|+.++ +.-|.++|......|.++++... .. .. ....+.++..|.+++.+..+-+..+.+..+
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~~~ 86 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPKEL 86 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHH
Confidence 455666555 37999999999999998777521 11 11 122345667798888776554434455555
Q ss_pred HHHHH
Q 015783 222 EEIVL 226 (400)
Q Consensus 222 ~~~a~ 226 (400)
.+.+.
T Consensus 87 ~~~~~ 91 (256)
T PRK12859 87 LNKVT 91 (256)
T ss_pred HHHHH
Confidence 54443
No 226
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=51.66 E-value=1.6e+02 Score=26.30 Aligned_cols=87 Identities=15% Similarity=0.021 Sum_probs=48.2
Q ss_pred HhHHHHHHhhhCCCCCEEEEecCC-ChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCCchhhhhhccCeEEEeC
Q 015783 248 DSTGPEIWEDTLGCVDIFVAAIGT-GGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVT 326 (400)
Q Consensus 248 ~ti~~Ei~~Ql~~~pD~vv~pvG~-Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~~~~~~~l~~~~~~~~~~V~ 326 (400)
...+.|+-+.+. +.++.++.-|+ .|....++++.++.+ -+++||-|..-.. .......+++.+.++
T Consensus 18 ~~~A~~lG~~la-~~g~~lV~GGg~~GlM~a~a~ga~~~g--G~viGi~p~~l~~----------~~~~~~~~~~~i~~~ 84 (178)
T TIGR00730 18 KELAAELGAYLA-GQGWGLVYGGGRVGLMGAIADAAMENG--GTAVGVNPSGLFS----------GEVVHQNLTELIEVN 84 (178)
T ss_pred HHHHHHHHHHHH-HCCCEEEECCChHhHHHHHHHHHHhcC--CeEEEecchhhhh----------hhccCCCCCceEEEC
Confidence 344455555552 23555555554 677777888887754 5789998864211 011223455566666
Q ss_pred HHHHHHHHHHHHHHcCCeeehh
Q 015783 327 NDEAVNMARRLALEEGLLVGIS 348 (400)
Q Consensus 327 d~e~~~a~~~la~~eGi~~~p~ 348 (400)
+-..... ..+....++++=|-
T Consensus 85 ~~~~Rk~-~m~~~sda~I~lPG 105 (178)
T TIGR00730 85 GMHERKA-MMAELADAFIAMPG 105 (178)
T ss_pred CHHHHHH-HHHHhCCEEEEcCC
Confidence 6553332 22333667777663
No 227
>PLN02740 Alcohol dehydrogenase-like
Probab=51.64 E-value=1.3e+02 Score=29.97 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=39.3
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+...+.+|.+.+| .++|.-|.+++..|+.+|.+-++.+. ..+.+++.++.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV-~G~G~vG~~a~q~ak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAI-FGLGAVGLAVAEGARARGASKIIGVD--INPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHCCCCcEEEEc--CChHHHHHHHHcCCcEEE
Confidence 3445566655444 46799999999999999985334332 245688888889986543
No 228
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=51.59 E-value=64 Score=32.75 Aligned_cols=92 Identities=10% Similarity=-0.045 Sum_probs=44.7
Q ss_pred cCCeEEEEeCCCCcHHHHHHHHHcCCEEE-EeCCCCCh--hhHHHHHHHHHHhCCCce-eeCCCC-ChHHHHHHHHhHHH
Q 015783 178 KGYKLIVTMPASTNLERRILLRAFGAEII-LTDPEKGL--RGALDKAEEIVLNTPNAY-MFQQFD-NMANLKIHFDSTGP 252 (400)
Q Consensus 178 ~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~-~~~~~~~~--~~a~~~a~~~a~~~~~~~-~~~~~~-~~~~~~~g~~ti~~ 252 (400)
+-.+..|+...+.-..--..++.+|.+.. ++.+. .. .+.+++..+..++.+-.+ ..+... ||..- .-.-+.
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~-~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~---~v~~~~ 99 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMADS-FLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCIT---DVCAAV 99 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHH---HHHHHH
Confidence 44556666665543333456677785544 44332 22 234555555555432111 112222 33221 111233
Q ss_pred HHHhhhCCCCCEEEEecCCChhHH
Q 015783 253 EIWEDTLGCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG~Gg~~a 276 (400)
++.++ .++| +|+.+|||+.+=
T Consensus 100 ~~~r~--~~~D-~IiavGGGS~iD 120 (395)
T PRK15454 100 AQLRE--SGCD-GVIAFGGGSVLD 120 (395)
T ss_pred HHHHh--cCcC-EEEEeCChHHHH
Confidence 44444 3588 567899999874
No 229
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.37 E-value=1.1e+02 Score=27.88 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=36.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHH-HHHHHcCCEEEEeCCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFGAEIILTDPE 211 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~-~~l~~~GA~V~~~~~~ 211 (400)
+..+|+..+|.-|.+++......|.+++++... ..+. ...+..|.++..+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D 60 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRD---PASLEAARAELGESALVIRAD 60 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC---HHHHHHHHHHhCCceEEEEec
Confidence 567888888999999999999999986655332 2222 2334457777655544
No 230
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.37 E-value=1.1e+02 Score=28.63 Aligned_cols=70 Identities=21% Similarity=0.165 Sum_probs=39.4
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-Hc-CCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AF-GAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~-~~-GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+.++ +.-|.++|......|.++++.-.......+++.+. .. |.+++.+..|-+..+.++.+.+..
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 445555544 67899999999999998766533222223333332 22 556665554443344555554443
No 231
>PRK08264 short chain dehydrogenase; Validated
Probab=51.36 E-value=58 Score=29.60 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=38.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl-~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+++.++|.-|.++|......|. +++++..... +... .|.++..+..+....+.+..+.
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~---~~~~---~~~~~~~~~~D~~~~~~~~~~~ 68 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE---SVTD---LGPRVVPLQLDVTDPASVAAAA 68 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh---hhhh---cCCceEEEEecCCCHHHHHHHH
Confidence 4678888889999999999999998 7666654321 2211 5556665544432233444433
No 232
>PRK14030 glutamate dehydrogenase; Provisional
Probab=51.35 E-value=87 Score=32.43 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHH-cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 015783 137 RIGYSMITDAEE-SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVT 185 (400)
Q Consensus 137 Rga~~~~~~a~~-~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vv 185 (400)
+|..+.+..+.+ .|. .....+++.-+.||-|..+|.....+|.+++.+
T Consensus 209 ~Gv~~~~~~~~~~~g~-~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVav 257 (445)
T PRK14030 209 FGALYFVHQMLETKGI-DIKGKTVAISGFGNVAWGAATKATELGAKVVTI 257 (445)
T ss_pred HHHHHHHHHHHHHcCC-CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 566677766544 443 444567899999999999999988888888774
No 233
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=51.32 E-value=1.7e+02 Score=27.46 Aligned_cols=54 Identities=30% Similarity=0.439 Sum_probs=37.3
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.+.++...++...+|..|.++...|+..|.+++++... +.+.+.++.+|++-+
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEV 191 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEE
Confidence 334455566666666999999999999999985554433 356666677887433
No 234
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=51.25 E-value=61 Score=28.32 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=38.8
Q ss_pred EEEEeC-C-ChHHHHHHHHHHHcCCeEEEEeCCC--CcH--HHH----HHHHHcCCEEEEeC
Q 015783 158 VLVEPT-T-GNTGLGIAFVAAVKGYKLIVTMPAS--TNL--ERR----ILLRAFGAEIILTD 209 (400)
Q Consensus 158 ~vv~as-s-GN~g~AlA~aa~~~Gl~~~Vvvp~~--~~~--~~~----~~l~~~GA~V~~~~ 209 (400)
+|+-.+ . +|.+.+++..++++|+.++++.|++ .++ ..+ +.....|.++..++
T Consensus 4 ~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 4 KIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred EEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 344444 3 7999999999999999999999998 444 233 33455699998884
No 235
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=51.07 E-value=1.2e+02 Score=27.16 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCeEEEEeCC-CCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH-HHHhCCCceee--CCCCChHHH
Q 015783 168 GLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDKAEE-IVLNTPNAYMF--QQFDNMANL 243 (400)
Q Consensus 168 g~AlA~aa~~~Gl~~~Vvvp~-~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~-~a~~~~~~~~~--~~~~~~~~~ 243 (400)
|..+..+++.+|.+..--++. +.-..-.......|..|.++++. .+..+.+.+ +.++.++...+ ++|.++..
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~---~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~- 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGK---PDVLQQLKVKLIKEYPKLKIVGAFGPLEPEE- 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCCEEEEECCCCChHH-
Confidence 366788899998764322221 11223344455678899999875 234444444 44455554322 34433221
Q ss_pred HHHHHhHHHHHHhhhC-CCCCEEEEecCCCh
Q 015783 244 KIHFDSTGPEIWEDTL-GCVDIFVAAIGTGG 273 (400)
Q Consensus 244 ~~g~~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg 273 (400)
-.+|.+++. ..||.|+++.|.--
T Consensus 89 -------~~~i~~~I~~s~~dil~VglG~Pk 112 (177)
T TIGR00696 89 -------RKAALAKIARSGAGIVFVGLGCPK 112 (177)
T ss_pred -------HHHHHHHHHHcCCCEEEEEcCCcH
Confidence 123455542 35999999998754
No 236
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=50.99 E-value=54 Score=32.47 Aligned_cols=41 Identities=27% Similarity=0.217 Sum_probs=20.6
Q ss_pred HHHHhhhC-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEe
Q 015783 252 PEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (400)
Q Consensus 252 ~Ei~~Ql~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Ve 295 (400)
.|+.++.. .++| +|+.+|||+.+= ++++.... ....+|+|-
T Consensus 67 ~~~~~~~~~~~~D-~IIavGGGS~iD-~aK~ia~~-~~~P~iaIP 108 (351)
T cd08170 67 ERLAEIARDNGAD-VVIGIGGGKTLD-TAKAVADY-LGAPVVIVP 108 (351)
T ss_pred HHHHHHHhhcCCC-EEEEecCchhhH-HHHHHHHH-cCCCEEEeC
Confidence 34444442 2577 566788887664 23333221 134555554
No 237
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=50.93 E-value=85 Score=30.42 Aligned_cols=50 Identities=32% Similarity=0.345 Sum_probs=36.2
Q ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+|.+.+| .++|..|.++...|+.+|.+.++++ +..+.+.+.++.+|++.+
T Consensus 163 ~g~~vlV-~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~ 212 (341)
T PRK05396 163 VGEDVLI-TGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRA 212 (341)
T ss_pred CCCeEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEE
Confidence 4456666 4579999999999999999644444 345667788888888643
No 238
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=50.92 E-value=1.8e+02 Score=26.96 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=39.1
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.+.++...++...+|..|.++...++.+|++.+++.+. ..++..++.+|++
T Consensus 113 l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 113 FARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 345566666666666778899999999999999885555333 3566666778864
No 239
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=50.78 E-value=57 Score=28.60 Aligned_cols=50 Identities=30% Similarity=0.349 Sum_probs=39.8
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
..++..++||-|...+.++..+|.+.+++ + ..+.+++..+..++..+.++
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~--d-~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP--D-ERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE--E-SSHHHHHHHHHTTTEESEET
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec--c-CCHHHHHhhhcccCceEEEc
Confidence 46888999999999999999999886665 2 35677788888999888775
No 240
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=50.72 E-value=1e+02 Score=27.88 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=44.2
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
..+|+..+|.-|.+++......|.+++++...+.. ......++..|.++..+..+....+.++.+.+..
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~ 73 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAI 73 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHH
Confidence 46788888999999999988899987765544321 1223345566777776665543344555554443
No 241
>PRK10490 sensor protein KdpD; Provisional
Probab=50.52 E-value=1.3e+02 Score=33.99 Aligned_cols=108 Identities=11% Similarity=0.003 Sum_probs=63.6
Q ss_pred CcEEEEeCCChHHHH----HHHHHHHcCCeEEEEeCCC-----CcH-------HHHHHHHHcCCEEEEeCCCCChhhHHH
Q 015783 156 KTVLVEPTTGNTGLG----IAFVAAVKGYKLIVTMPAS-----TNL-------ERRILLRAFGAEIILTDPEKGLRGALD 219 (400)
Q Consensus 156 ~~~vv~assGN~g~A----lA~aa~~~Gl~~~Vvvp~~-----~~~-------~~~~~l~~~GA~V~~~~~~~~~~~a~~ 219 (400)
.+.+|+-+++-++.. .+..|.+++-+++++.... .+. ..+.+.+.+||+++.+.++ +-.+
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~----dva~ 326 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP----AEEK 326 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC----CHHH
Confidence 457888888777644 4556777788876554321 111 1234567799999888754 2234
Q ss_pred HHHHHHHhCC-CceeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecC
Q 015783 220 KAEEIVLNTP-NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIG 270 (400)
Q Consensus 220 ~a~~~a~~~~-~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG 270 (400)
...+.+++.+ ..+.+.....+. | ....++...+.+.. +.+|+.|++..
T Consensus 327 ~i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 327 AVLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 4455666543 224444433322 2 22346777888887 56888888644
No 242
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=50.45 E-value=2.4e+02 Score=27.41 Aligned_cols=15 Identities=47% Similarity=0.671 Sum_probs=9.1
Q ss_pred CCCEEEEecCCChhHH
Q 015783 261 CVDIFVAAIGTGGTIT 276 (400)
Q Consensus 261 ~pD~vv~pvG~Gg~~a 276 (400)
++|. |+.+|||+.+-
T Consensus 78 ~~d~-IIaiGGGs~~D 92 (332)
T cd07766 78 EVDA-VIAVGGGSTLD 92 (332)
T ss_pred CcCE-EEEeCCchHHH
Confidence 4664 55677777653
No 243
>PRK07814 short chain dehydrogenase; Provisional
Probab=50.33 E-value=91 Score=29.00 Aligned_cols=69 Identities=16% Similarity=0.139 Sum_probs=42.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+.++|--|.++|......|.+++++...... ......++..|.++..+..+.+..+.+..+.+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 567888888999999999988899987666543211 112233444566666554443334445444443
No 244
>PLN02253 xanthoxin dehydrogenase
Probab=50.26 E-value=81 Score=29.58 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=26.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
+..+|+.++|.-|.++|......|.+++++-.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~ 50 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDL 50 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeC
Confidence 56788888899999999999889998777643
No 245
>PRK09242 tropinone reductase; Provisional
Probab=49.97 E-value=1e+02 Score=28.35 Aligned_cols=69 Identities=16% Similarity=0.079 Sum_probs=42.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHc--CCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAF--GAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+++..+|.-|.++|......|.+++++....... .....++.. +.+++.+..+....+.++.+.+.
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5678888889999999999999999876665432111 112233333 67787776554334445444443
No 246
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=49.95 E-value=1.4e+02 Score=28.92 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=36.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
..+..-+.|..|.+++..++.+|.+++++-.. +.+..+.+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 46777888999999999999999877666443 445667778898754
No 247
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=49.91 E-value=83 Score=31.08 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=39.3
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.+.+.+|.+.+|. ++|.-|.+++..|+.+|.+-++.+.. .+.+++.++.+|++.+.
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 33445565565555 67999999999999999853444432 35677788889986443
No 248
>PRK07904 short chain dehydrogenase; Provisional
Probab=49.64 E-value=1.2e+02 Score=28.23 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=35.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCc--HHHHHHHHHcCC-EEEEeCCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTN--LERRILLRAFGA-EIILTDPE 211 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~-Gl~~~Vvvp~~~~--~~~~~~l~~~GA-~V~~~~~~ 211 (400)
+..+|+.++|--|.++|...... |.+++++.....+ ....+.++..|. +++.+..+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D 68 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFD 68 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEec
Confidence 46778888888999999887777 4887777543322 222344555554 56555443
No 249
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=49.63 E-value=1e+02 Score=30.32 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=38.6
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
..+.+|.+.+|. ++|.-|.+++..|+.+|...++++.. .+.+++.++.+|++.+.
T Consensus 183 ~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 183 AKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 445566555555 67999999999999999843444432 35688888899986444
No 250
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=49.39 E-value=97 Score=28.26 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=42.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH-HHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|--|.+++......|.+++++........ ....+...+.++..+..+....+.++.+.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIA 70 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHH
Confidence 45678888899999999998888998777654422111 122344557777766555433344444443
No 251
>PRK06720 hypothetical protein; Provisional
Probab=49.33 E-value=1.3e+02 Score=26.39 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=21.9
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
+..+++..+|--|.++|......|.+++++-
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 4566776677788888887777777655543
No 252
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=48.89 E-value=1.2e+02 Score=29.17 Aligned_cols=54 Identities=24% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
..+.++.+.++. ++|..|.+++..|+.+|++++++.+. ..+++.++.+|++.+.
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~ 211 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITRS---PDKRELARKLGADEVV 211 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhCCcEEe
Confidence 445555566665 67779999999999999986665443 4566667777865443
No 253
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=48.80 E-value=89 Score=31.21 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=12.3
Q ss_pred HHHhhhC-CCCCEEEEecCCChhHH
Q 015783 253 EIWEDTL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 253 Ei~~Ql~-~~pD~vv~pvG~Gg~~a 276 (400)
|+.+++. .++| +|+.+|||+.+=
T Consensus 75 ~~~~~~~~~~~d-~IIavGGGsv~D 98 (366)
T PRK09423 75 RLVAIAEENGCD-VVIGIGGGKTLD 98 (366)
T ss_pred HHHHHHHhcCCC-EEEEecChHHHH
Confidence 4444442 2466 455677777653
No 254
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.74 E-value=1.3e+02 Score=27.35 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=39.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHH-HHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRI-LLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~-~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+|+.++|.-|.++|......|.++++...... .+.+ ....++.++..+..+....+.+..+.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE--DAAEALADELGDRAIALQADVTDREQVQAMF 71 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH--HHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence 46788888899999999998889998776554322 2222 23334556655544432233444443
No 255
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=48.63 E-value=1e+02 Score=30.59 Aligned_cols=55 Identities=31% Similarity=0.365 Sum_probs=39.2
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+...+.+|...++ .+.|.-|.+++..|+.+|...++++. ....+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 3344555566666 56799999999999999985444443 3567888888899853
No 256
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=48.61 E-value=1.2e+02 Score=28.82 Aligned_cols=49 Identities=29% Similarity=0.364 Sum_probs=36.5
Q ss_pred CCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+...++...+|..|.+++..|+.+|.+++++.. .+.+.+.++.+|++-+
T Consensus 147 ~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~ 195 (324)
T cd08288 147 DGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEI 195 (324)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEE
Confidence 345555555699999999999999998655543 4567888888998543
No 257
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=48.56 E-value=1.1e+02 Score=25.46 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=33.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-CcHH----HHHHHHHcCCEEEEeCCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLE----RRILLRAFGAEIILTDPE 211 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-~~~~----~~~~l~~~GA~V~~~~~~ 211 (400)
..+++..+|..|.+++......|...++++..+ .+.. ....++..|.++..+..+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACD 61 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECC
Confidence 356777778899999998888887544444322 1111 124445567676655544
No 258
>PRK07774 short chain dehydrogenase; Provisional
Probab=48.54 E-value=1.3e+02 Score=27.46 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=40.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+++.++|--|.+++......|.+++++....... .....++..+.+++.+..+.+..+.++.+.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 4678888889999999999999999877765432211 122334445666655544433233444433
No 259
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=48.45 E-value=87 Score=31.44 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=46.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHcCC-EEEEeCCCCChh-hHHHHHHHHHHhCCC-ceeeCCCC-ChHHHHHHHHhHHHHH
Q 015783 179 GYKLIVTMPASTNLERRILLRAFGA-EIILTDPEKGLR-GALDKAEEIVLNTPN-AYMFQQFD-NMANLKIHFDSTGPEI 254 (400)
Q Consensus 179 Gl~~~Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~~~~-~a~~~a~~~a~~~~~-~~~~~~~~-~~~~~~~g~~ti~~Ei 254 (400)
-++..|+...+.-..--..++.+|. ++.++.+..... +..++..+..++.+- ....+... ||.. . ...++
T Consensus 4 ~~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~-----~-~v~~~ 77 (377)
T cd08176 4 YLPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI-----T-NVKDG 77 (377)
T ss_pred cCCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH-----H-HHHHH
Confidence 3456666666544444456677785 566665432222 455666665554321 22222221 3322 1 12344
Q ss_pred HhhhC-CCCCEEEEecCCChhHH
Q 015783 255 WEDTL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 255 ~~Ql~-~~pD~vv~pvG~Gg~~a 276 (400)
.+++. .++| +|+.+|||+.+=
T Consensus 78 ~~~~~~~~~D-~IIavGGGS~iD 99 (377)
T cd08176 78 LAVFKKEGCD-FIISIGGGSPHD 99 (377)
T ss_pred HHHHHhcCCC-EEEEeCCcHHHH
Confidence 44442 3578 567899998754
No 260
>PRK07062 short chain dehydrogenase; Provisional
Probab=48.32 E-value=1.2e+02 Score=28.05 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=42.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH-HHHHHHH-c-CCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRA-F-GAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~-~-GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+.++|--|.++|......|.+++++........ ....+.. + +.+++.+..+.+..+.++.+.+.+
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 56788888899999999999999998776654322111 1222322 2 457766554443344555544433
No 261
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=48.17 E-value=1.1e+02 Score=30.24 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=35.4
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
..|+.+++++.+..++..+....-+-.|+++.-.-..-...++.+|++++.++.+
T Consensus 92 ~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~ 146 (374)
T PRK02610 92 ANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRD 146 (374)
T ss_pred HHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCC
Confidence 3467777778887766555443322245665544455567778899999988743
No 262
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=47.84 E-value=1e+02 Score=29.46 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=38.1
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+.+.+.++.+.++ .++|..|.+++..|+..|++.+++.+. ..+++.++.+|++
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~ 213 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGAD 213 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCc
Confidence 4555666556566 467899999999999999876655444 3566777778874
No 263
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.61 E-value=1.4e+02 Score=27.19 Aligned_cols=65 Identities=23% Similarity=0.257 Sum_probs=39.9
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH-HHHHHHHcCCEEEEeCCCCChhhHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKGLRGALDKA 221 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (400)
++.+|+.++|.-|.+++......|.+++++........ ....+.. |.++..+..+....+.++.+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~ 71 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAA 71 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHH
Confidence 56788888899999999999889999666644321111 1222332 56676665554333344443
No 264
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=47.52 E-value=2.2e+02 Score=27.13 Aligned_cols=53 Identities=30% Similarity=0.490 Sum_probs=38.0
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.++.+.++...+|-.|.+++..|+.+|.+++++.. +..+...++.+|++
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 186 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCD 186 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCc
Confidence 355666667777777899999999999999988655543 34556666777764
No 265
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.38 E-value=1.3e+02 Score=27.25 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=41.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH--HHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+++.++|.-|.++|......|.+++++...+... .....+...|.++..+..+....+.+..+.
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLV 74 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 4578888889999999998888899877663433211 122334445777776665543334444443
No 266
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=47.38 E-value=2.2e+02 Score=26.93 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=36.7
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.+.++...++...+|..|.+++..|+.+|++.+++.+ ...+.+.++.+|++
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~---~~~~~~~~~~~g~~ 189 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAG---GPAKTALVRALGAD 189 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCC
Confidence 34455556566666666799999999999999988544432 23445555667763
No 267
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=47.35 E-value=32 Score=30.74 Aligned_cols=158 Identities=20% Similarity=0.218 Sum_probs=73.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHH-HHHHHH-cCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RILLRA-FGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~-~~~l~~-~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (400)
|..-++|..|+++|+.+...|++++++-+......+ ...++. +...+ -.+. ..+ +++...... ..+...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~--~~~~--~~~--~~~~~~~~~---i~~~~d 72 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLV--RKGR--LSQ--EEADAALAR---ISFTTD 72 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHH--HTTT--TTH--HHHHHHHHT---EEEESS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhh--hhcc--chh--hhhhhhhhh---cccccC
Confidence 567789999999999999999999999775322111 111111 10000 0010 000 011111111 111111
Q ss_pred CCC-----------hHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCC
Q 015783 237 FDN-----------MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE 305 (400)
Q Consensus 237 ~~~-----------~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g 305 (400)
+.. +.+. .-...+..++.+.+ .+|.|++...++-.+.-++..+ ...-|++|......+.+
T Consensus 73 l~~~~~adlViEai~E~l-~~K~~~~~~l~~~~--~~~~ilasnTSsl~i~~la~~~---~~p~R~ig~Hf~~P~~~--- 143 (180)
T PF02737_consen 73 LEEAVDADLVIEAIPEDL-ELKQELFAELDEIC--PPDTILASNTSSLSISELAAAL---SRPERFIGMHFFNPPHL--- 143 (180)
T ss_dssp GGGGCTESEEEE-S-SSH-HHHHHHHHHHHCCS---TTSEEEE--SSS-HHHHHTTS---STGGGEEEEEE-SSTTT---
T ss_pred HHHHhhhheehhhccccH-HHHHHHHHHHHHHh--CCCceEEecCCCCCHHHHHhcc---CcCceEEEEeccccccc---
Confidence 110 1111 12233333333332 5899998887777666665554 34557888887542211
Q ss_pred CCCCCchhhhhhccCeEE--EeCHHHHHHHHHHHHHHcCCee
Q 015783 306 NAGYVPSILDVQLLDEVI--KVTNDEAVNMARRLALEEGLLV 345 (400)
Q Consensus 306 ~~~~~~~~l~~~~~~~~~--~V~d~e~~~a~~~la~~eGi~~ 345 (400)
.| +.+++ .-+++++++.+..|.+.-|..+
T Consensus 144 ----~~-------lVEvv~~~~T~~~~~~~~~~~~~~~gk~p 174 (180)
T PF02737_consen 144 ----MP-------LVEVVPGPKTSPETVDRVRALLRSLGKTP 174 (180)
T ss_dssp -------------EEEEEE-TTS-HHHHHHHHHHHHHTT-EE
T ss_pred ----Cc-------eEEEeCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 11 11111 1378888888888888776543
No 268
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.31 E-value=1.5e+02 Score=26.63 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=43.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH--HHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE--RRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~--~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+|+..+|.-|.+++......|.+++++........ ....++..+.++..+..+....+.+..+.
T Consensus 7 ~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 75 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAV 75 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHH
Confidence 46788888899999999999999998777665543221 22344456777766655543334444443
No 269
>PRK09291 short chain dehydrogenase; Provisional
Probab=47.18 E-value=65 Score=29.61 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=36.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH-HHHHHHHcCCEEEEeCCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPE 211 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~~GA~V~~~~~~ 211 (400)
++.+|+.++|.-|.+++......|.+++++........ ........|.++..+..+
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 59 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLD 59 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEee
Confidence 45788888899999999999999998887765421111 122334456555554433
No 270
>PRK12747 short chain dehydrogenase; Provisional
Probab=47.10 E-value=91 Score=28.63 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=37.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~ 211 (400)
+..+|+.++|--|.++|......|.++++...... .......+...|.+++.+..+
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 62 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGAN 62 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecc
Confidence 56788888899999999999999988776532221 122233455567666655444
No 271
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=47.06 E-value=1.1e+02 Score=30.58 Aligned_cols=56 Identities=23% Similarity=0.367 Sum_probs=40.7
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEe
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~ 208 (400)
..+.++.+.+|...+|.-|.+++..|+.+|.+.+++.. ...+...++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~---~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVS---SPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcC---CHHHHHHHHHcCCCEEec
Confidence 34455556566666699999999999999998655432 456778888899876653
No 272
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=46.95 E-value=1e+02 Score=30.72 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=39.9
Q ss_pred CCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
.+.++.+.+|...+|..|.+++..|+.+|.+.+++.+ ++.+++.++.+|++.+.
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~---s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVS---SEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3445555555555699999999999999999665543 56788888889986544
No 273
>PRK07576 short chain dehydrogenase; Provisional
Probab=46.91 E-value=1.3e+02 Score=28.12 Aligned_cols=69 Identities=23% Similarity=0.147 Sum_probs=42.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+..+|.-|.++|......|.+++++...... ......+...+.+++.+..+.+..+.+..+.+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 567788888999999999988899887666433211 112234455677766555443333444444443
No 274
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=46.76 E-value=1.4e+02 Score=29.51 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=44.5
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH-cCCEEEE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~-~GA~V~~ 207 (400)
++-|...+|.+.+|++-+|--|.-+-..|+..|.+++-+.. .++|.+.+.. +|-+...
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 34566666788899999999999999999999988877765 4577777776 6666554
No 275
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=46.74 E-value=1e+02 Score=27.87 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=42.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+|+..+|.-|.++|......|.+++++...... ......++..|.++..+..+.+-.+.++.+.+
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 68 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLE 68 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHH
Confidence 677788899999999999999997766543221 22344556668888776655433344444443
No 276
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=46.70 E-value=54 Score=32.72 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHcCCEEE-E-eCCCCChhhHHHHHHHHHHhCCCceeeCCCCChH-HHHHHHHhHHHHHHhhhCCCCCE
Q 015783 188 ASTNLERRILLRAFGAEII-L-TDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMA-NLKIHFDSTGPEIWEDTLGCVDI 264 (400)
Q Consensus 188 ~~~~~~~~~~l~~~GA~V~-~-~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~-~~~~g~~ti~~Ei~~Ql~~~pD~ 264 (400)
++...+.-..++.+|++=. + .+.+.---+.+..+.+..++++ .-| .-|++.. ++-.|--+-+.|+.+. .++|
T Consensus 55 ~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~-I~~-~vyD~v~~ePtv~s~~~alefak~--~~fD- 129 (465)
T KOG3857|consen 55 KGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENG-INV-EVYDKVQPEPTVGSVTAALEFAKK--KNFD- 129 (465)
T ss_pred chhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcC-Cce-EEecCccCCCchhhHHHHHHHHHh--cccc-
Confidence 3445566677777887533 2 2332212245666666666653 211 1222211 1113556667787765 4577
Q ss_pred EEEecCCChhH
Q 015783 265 FVAAIGTGGTI 275 (400)
Q Consensus 265 vv~pvG~Gg~~ 275 (400)
.++.+|||+..
T Consensus 130 s~vaiGGGSa~ 140 (465)
T KOG3857|consen 130 SFVAIGGGSAH 140 (465)
T ss_pred eEEEEcCcchh
Confidence 46678888865
No 277
>PRK08339 short chain dehydrogenase; Provisional
Probab=46.69 E-value=1.1e+02 Score=28.55 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=41.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHH-HcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLR-AFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+.++|--|.++|......|.+++++-...... .....++ ..|.++..+..+.+..+.++.+.+..
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 5678888888999999999999999877664321111 1122222 23666655544433334454444433
No 278
>PRK06123 short chain dehydrogenase; Provisional
Probab=46.44 E-value=88 Score=28.52 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=41.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.++|.-|.++|..-...|..+++...... .......++..|.+++.+..+.+..+.++.+.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEA 73 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHH
Confidence 35678888899999999988888976544432221 1122334556677776665554334455555443
No 279
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=46.29 E-value=73 Score=32.76 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=40.8
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC-----CcHHHHHHHHHcCCEEEEe
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-----TNLERRILLRAFGAEIILT 208 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~-----~~~~~~~~l~~~GA~V~~~ 208 (400)
+.++..++||.|.-+|..+.++|.+++++.... .....++.++..|.+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 468999999999999999999999988887552 1233445677788888754
No 280
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=46.27 E-value=1.8e+02 Score=28.70 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=38.4
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
.+.+.++.+.++. ++|.-|.+++..|+.+|.+.++.+.. .+.|...++.+|++.+
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~ 235 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHV 235 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEE
Confidence 3445555566665 67999999999999999975544433 3567777788887543
No 281
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=46.27 E-value=2e+02 Score=27.65 Aligned_cols=53 Identities=38% Similarity=0.544 Sum_probs=36.6
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+...+.++.+.++. ++|..|.+++..|+.+|++++++.. +..+...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 34455566666666 5788899999999999988655533 35566666777753
No 282
>PLN02702 L-idonate 5-dehydrogenase
Probab=46.25 E-value=1.5e+02 Score=29.14 Aligned_cols=57 Identities=30% Similarity=0.382 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+...+.++...+|. ++|.-|.++...++.+|.+.++.+.. ...+.+.++.+|++...
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34445555565565 67999999999999999986555543 46777788888886554
No 283
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=46.09 E-value=1.4e+02 Score=27.66 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=42.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH--HHHHHHH-HcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLR-AFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~--~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.+++--|.++|......|.+++++...+... .....++ ..|.++..+..+.+..+.++.+.+.
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 5678888888899999999999999876654332211 1122333 3577777666554333445544443
No 284
>PRK07775 short chain dehydrogenase; Provisional
Probab=46.09 E-value=1.4e+02 Score=27.94 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=42.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+..+|--|.+++......|.+++++....... .-...++..|.++..+..+.+..+.+..+.+
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVA 79 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 3567777779999999999888899876665332111 1223455668888776655443344444443
No 285
>PRK07550 hypothetical protein; Provisional
Probab=46.04 E-value=2.5e+02 Score=27.76 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCcchhhhHHHHHHHHHHcCC-CCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 131 CRSVKDRIGYSMITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 131 tGSfK~Rga~~~~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
.|....|.+...... ...|. +.+ ..|+.+++++.+..++..+- .+-...|++|.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~-~~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYS-RLYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 466666655443222 22332 222 45677777788877666553 34445677776443444556788999999887
Q ss_pred CC
Q 015783 210 PE 211 (400)
Q Consensus 210 ~~ 211 (400)
.+
T Consensus 143 ~~ 144 (386)
T PRK07550 143 CD 144 (386)
T ss_pred cC
Confidence 53
No 286
>PRK08251 short chain dehydrogenase; Provisional
Probab=45.95 E-value=1.4e+02 Score=27.26 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=40.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH-HHHHHHHc--CCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAF--GAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+++.++|.-|.++|......|.++++......... ....+... |.+++.+..+.+..+.+..+.+
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFA 73 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHH
Confidence 45788888899999999998888987665543321111 11222222 6778776655443344444444
No 287
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.85 E-value=1.6e+02 Score=28.84 Aligned_cols=73 Identities=21% Similarity=0.127 Sum_probs=47.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEe-CCCCcHHHHHHHHHcCCEEEEeCCCCC-hhhHHHHHHHHHHhCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM-PASTNLERRILLRAFGAEIILTDPEKG-LRGALDKAEEIVLNTP 229 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv-p~~~~~~~~~~l~~~GA~V~~~~~~~~-~~~a~~~a~~~a~~~~ 229 (400)
+..++|.+++-.|+++|.-.++.|-+.++.= -.....+.+++++..| +++....+-+ .++-.+.|.++-++.+
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 5677888888899999999999998655443 2234567777888777 6654433322 4455555555555543
No 288
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=45.72 E-value=2.3e+02 Score=26.96 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=36.3
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH-cCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~-~GA~ 204 (400)
.+.+.++...++...+|-.|.+++..|+.+|.+.+++.. ...+...++. +|++
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~ 193 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFD 193 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCc
Confidence 344555556666665799999999999999997555533 3456666665 7774
No 289
>PRK09072 short chain dehydrogenase; Provisional
Probab=45.72 E-value=1.2e+02 Score=28.10 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=41.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH-HHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+++.++|-.|.+++......|.+++++........ ....+ ..+.++..+..+....+.++.+.+..
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHH
Confidence 56788888899999999999999998776654321111 11222 24666666554433233444444433
No 290
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=45.67 E-value=3e+02 Score=26.83 Aligned_cols=53 Identities=36% Similarity=0.496 Sum_probs=36.7
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCC-eEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl-~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
.+...++.+.++. ++|..|.+++..|+.+|+ +++++.. ...+...++.+|++-
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~~---~~~~~~~~~~~g~~~ 225 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVIDG---SPERLELAREFGADA 225 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCCe
Confidence 3433355566665 579999999999999999 5444422 456777778888753
No 291
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=45.55 E-value=38 Score=34.03 Aligned_cols=33 Identities=30% Similarity=0.287 Sum_probs=29.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST 190 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~ 190 (400)
+|-.-++|+.|+-++.+|+.+|++++|+-|...
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 577889999999999999999999999998743
No 292
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=45.51 E-value=95 Score=31.33 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=46.0
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHcCC-EEEEeCCCC-ChhhHHHHHHHHHHhCCCce-eeCCC-CChHHHHHHHHhHHHHH
Q 015783 179 GYKLIVTMPASTNLERRILLRAFGA-EIILTDPEK-GLRGALDKAEEIVLNTPNAY-MFQQF-DNMANLKIHFDSTGPEI 254 (400)
Q Consensus 179 Gl~~~Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~-~~~~a~~~a~~~a~~~~~~~-~~~~~-~~~~~~~~g~~ti~~Ei 254 (400)
-++..|+...+.-..--..++.+|. ++.++.+.. .-.+.+++..+..++.+-.+ ..++- .||.. . .-.-+.|+
T Consensus 7 ~~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~--~-~v~~~~~~ 83 (383)
T PRK09860 7 FIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTT--E-NVAAGLKL 83 (383)
T ss_pred ccCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCH--H-HHHHHHHH
Confidence 3456666666654444556777885 555554431 11244555665555432111 22221 13322 1 11123344
Q ss_pred HhhhCCCCCEEEEecCCChhHH
Q 015783 255 WEDTLGCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 255 ~~Ql~~~pD~vv~pvG~Gg~~a 276 (400)
.++ .++|. |+.+|||+.+=
T Consensus 84 ~~~--~~~D~-IiaiGGGS~iD 102 (383)
T PRK09860 84 LKE--NNCDS-VISLGGGSPHD 102 (383)
T ss_pred HHH--cCCCE-EEEeCCchHHH
Confidence 444 35884 67899999774
No 293
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=45.46 E-value=2.1e+02 Score=28.75 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=44.3
Q ss_pred CeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChh--hHHHHHHHHHHhCC-CceeeCCCC-ChHHHHHHHHhHHHHHH
Q 015783 180 YKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR--GALDKAEEIVLNTP-NAYMFQQFD-NMANLKIHFDSTGPEIW 255 (400)
Q Consensus 180 l~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~--~a~~~a~~~a~~~~-~~~~~~~~~-~~~~~~~g~~ti~~Ei~ 255 (400)
.+..|+...+.-..--..++.+|-++.++.+..... +.++...+..++.+ .....+... ||.. ....|+.
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~------~~v~~~~ 79 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL------ETVREGI 79 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH------HHHHHHH
Confidence 455566665554444456666777887765432222 33455555554432 111122221 2221 1112333
Q ss_pred hhhC-CCCCEEEEecCCChhHH
Q 015783 256 EDTL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 256 ~Ql~-~~pD~vv~pvG~Gg~~a 276 (400)
+++. .++|. |+.+|||+.+=
T Consensus 80 ~~~~~~~~D~-IIaiGGGS~iD 100 (382)
T cd08187 80 ELCKEEKVDF-ILAVGGGSVID 100 (382)
T ss_pred HHHHHcCCCE-EEEeCChHHHH
Confidence 3332 35785 67899998764
No 294
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=45.23 E-value=1e+02 Score=27.83 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=41.7
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH--HHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
..+|+..+|.-|..+|......|.+++++.-.+... .....+...+.++..+..+....+.++.+.+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVA 70 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHH
Confidence 457888889999999999999999877665422111 1122344456677666655433344444444
No 295
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=45.05 E-value=54 Score=32.61 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=58.8
Q ss_pred HHHHhhhCCCCCEEEEecCCChhHHhH--HHHHHhcCCCcEEEEEeCCCCccccCCCCCCCchhhhhhccCeEEEeCHHH
Q 015783 252 PEIWEDTLGCVDIFVAAIGTGGTITGT--GRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDE 329 (400)
Q Consensus 252 ~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi--~~~~k~~~~~~rvi~Vep~~~~~l~~g~~~~~~~~l~~~~~~~~~~V~d~e 329 (400)
.|+.+.. +|+.|++..+..+-+.|= -...++...+.+||.|+..+.- +... .-.....+.+.+...++++|
T Consensus 68 ~ea~e~y--~P~lI~VvTTCvseIIGDDIeaVvkE~~~giPVI~V~t~GGf---Gdn~--~G~~~aLeAiidq~~i~~~e 140 (352)
T TIGR03282 68 RYAEEKF--KPELIGVVGTCASMIIGEDLKEAVDEADVDAEVIAVEVHAGF---GDNT--EGVIATLESAAEAGIIDEDE 140 (352)
T ss_pred HHHHHhc--CCCEEEEECCCchhhccCCHHHHHHHhCCCCCEEEEECCCCC---ccHH--HHHHHHHHHHHHhCCcCHHH
Confidence 3444443 589888888877766664 2233444567889999874421 1100 01111122223334456665
Q ss_pred HHHHHHHH------HHHcC----CeeehhHHHHHH-HHHHHhcCCCCCCCeEEEEeCC
Q 015783 330 AVNMARRL------ALEEG----LLVGISSGAAAA-AAISLARRPENSGKLIAAIFPS 376 (400)
Q Consensus 330 ~~~a~~~l------a~~eG----i~~~p~sgaa~a-aa~~l~~~~~~~~~~vVvl~t~ 376 (400)
.-+.-+.| -+..| -++.|+-|--.- ++.++.+. ...++++++|+..
T Consensus 141 ~~rq~~~l~~at~~ek~~g~a~~~yi~p~~~d~~~~~~~~l~~~-~~~~~~~~~vlna 197 (352)
T TIGR03282 141 VERQKELLKKATEVEKKRGMAKREYIEPSYGDDKHKVAKRLVDL-IQEGKKVLAILNA 197 (352)
T ss_pred HHHHHHHHHHHHHHHHHhchhhccccCCCCCccHHHHHHHHHHH-HhcCCcEEEEEec
Confidence 44333333 22333 367777443332 23333322 2467888888874
No 296
>PRK05650 short chain dehydrogenase; Provisional
Probab=44.87 E-value=1.3e+02 Score=28.02 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=42.0
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+.+|+.++|.-|.++|......|.+++++...... ......++..|.++..+..+....+.++.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 68 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALA 68 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 35788888999999999988899987776543221 2223345566777776655533233344443
No 297
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=44.72 E-value=2.4e+02 Score=26.32 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=36.6
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+.+.+.++...++...+|..|.+++..++..|.+.+++... ..+.+.++.+|++
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGAD 186 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 45556666666666667999999999999999876554332 3444455666654
No 298
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=44.72 E-value=2.5e+02 Score=26.12 Aligned_cols=52 Identities=31% Similarity=0.408 Sum_probs=35.5
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+.+.++...++...+|..|.+++..++..|.+.++..+. ..+.+.+..+|++
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 191 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGAD 191 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCC
Confidence 445555666666667999999999999999876555442 3455555666653
No 299
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=44.57 E-value=1.6e+02 Score=28.54 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=34.6
Q ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
++...++ .++|..|.+++..|+.+|.+.++++.. ...+...++.+|++.
T Consensus 175 ~~~~vlI-~g~g~vg~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 223 (350)
T cd08240 175 ADEPVVI-IGAGGLGLMALALLKALGPANIIVVDI--DEAKLEAAKAAGADV 223 (350)
T ss_pred CCCEEEE-ECCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCcE
Confidence 3344444 478999999999999999965555432 456777778788753
No 300
>PRK13243 glyoxylate reductase; Reviewed
Probab=44.42 E-value=1.6e+02 Score=29.13 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=64.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
.++|..-+-|+-|.++|..++.+|+++++|=+... .. ....+|... . +.+ ++..+. +.+.++
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~-~~---~~~~~~~~~--~----~l~-------ell~~a-DiV~l~ 211 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRK-PE---AEKELGAEY--R----PLE-------ELLRES-DFVSLH 211 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCC-hh---hHHHcCCEe--c----CHH-------HHHhhC-CEEEEe
Confidence 35788889999999999999999998877655322 11 123345431 1 122 233332 444443
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHH--hHHHHHHh
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT--GTGRFLKM 284 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~a--Gi~~~~k~ 284 (400)
-..++. -...+..|.++.+ +++.+++-+|.|+..- .+..++++
T Consensus 212 lP~t~~----T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~~aL~~aL~~ 256 (333)
T PRK13243 212 VPLTKE----TYHMINEERLKLM--KPTAILVNTARGKVVDTKALVKALKE 256 (333)
T ss_pred CCCChH----HhhccCHHHHhcC--CCCeEEEECcCchhcCHHHHHHHHHc
Confidence 322222 2244556777777 5889999999999874 44555544
No 301
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=44.12 E-value=2.7e+02 Score=26.75 Aligned_cols=54 Identities=31% Similarity=0.425 Sum_probs=35.6
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+...+.++...++. ++|-.|.+++..|+..|++.+++... .+.+...++.+|++
T Consensus 159 ~~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~~--s~~~~~~~~~~g~~ 212 (343)
T cd08235 159 RKAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSDL--NEFRLEFAKKLGAD 212 (343)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCc
Confidence 33455666666666 57889999999999999994443322 34455555666663
No 302
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=44.07 E-value=2.2e+02 Score=27.12 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=37.8
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.++.+.++. ++|..|.+++..|+.+|++++ ++..+....+...++.+|++
T Consensus 159 ~~~~~~g~~vlI~-g~g~~g~~~~~la~~~G~~v~-~~~~~~~~~~~~~~~~~g~~ 212 (306)
T cd08258 159 RSGIRPGDTVVVF-GPGPIGLLAAQVAKLQGATVV-VVGTEKDEVRLDVAKELGAD 212 (306)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EECCCCCHHHHHHHHHhCCc
Confidence 3445555666675 579999999999999999854 33233346677778888863
No 303
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=44.06 E-value=1.2e+02 Score=30.32 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=41.5
Q ss_pred HHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
+.+.++..+.||.+ |...+.|-.|.-...+|+.+|.+++.+-- ++.|++..+.+||+.+...
T Consensus 156 y~alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~~---~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 156 YRALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAITR---SEEKLELAKKLGADHVINS 217 (339)
T ss_pred eeehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEeC---ChHHHHHHHHhCCcEEEEc
Confidence 34445555667644 66777776777777778878866666633 4567777788888877654
No 304
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=44.06 E-value=1.3e+02 Score=31.14 Aligned_cols=49 Identities=10% Similarity=-0.058 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 015783 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVT 185 (400)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vv 185 (400)
+|..+.+..+.+.-..+....+++..+.||-|..+|.....+|.+++-+
T Consensus 218 ~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVav 266 (454)
T PTZ00079 218 YGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTM 266 (454)
T ss_pred HHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 4666777665543222222467899999999999998888888777633
No 305
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=43.96 E-value=1.6e+02 Score=27.00 Aligned_cols=63 Identities=25% Similarity=0.235 Sum_probs=39.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHH-HHcCCEEEEeCCCCChhhHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+.+++..+|..|.++|......|.+++++... +.+...+ ...|.++..+..+....+.++.+.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~ 65 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLDVRNRAAIEEML 65 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEecCCCHHHHHHHH
Confidence 35788888999999999999999987665432 2333332 334666666555433333444443
No 306
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=43.84 E-value=1.2e+02 Score=27.74 Aligned_cols=60 Identities=20% Similarity=0.084 Sum_probs=40.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+++..+|.-|.++|......|.+++++.... ++..+.++..+..+....+.++.+.+
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~ 68 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF--------LTQEDYPFATFVLDVSDAAAVAQVCQ 68 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch--------hhhcCCceEEEEecCCCHHHHHHHHH
Confidence 5678888889999999999988999888775542 33345566555544333344544443
No 307
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=43.65 E-value=2.1e+02 Score=25.93 Aligned_cols=52 Identities=38% Similarity=0.484 Sum_probs=34.2
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+.+.++.+.++...++ .|.+++..++..|.+.+++.+. +.+.+.++.+|++.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 181 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADH 181 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCce
Confidence 3334555656655555 9999999999999776655443 35566666677543
No 308
>PRK12746 short chain dehydrogenase; Provisional
Probab=43.65 E-value=1.6e+02 Score=26.89 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=42.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH--HHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL--ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~--~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+.++|--|.++|......|.++++....+... .....+...|.++..+..+....+.+..+.+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~ 76 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVE 76 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHH
Confidence 4678888889999999999888998877654433211 1122344446677666554333344444443
No 309
>PRK07856 short chain dehydrogenase; Provisional
Probab=43.54 E-value=1.1e+02 Score=28.05 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=38.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|......|.+++++..... + ...+.++..+..+....+.++.+.+
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~---~----~~~~~~~~~~~~D~~~~~~~~~~~~ 67 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAP---E----TVDGRPAEFHAADVRDPDQVAALVD 67 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChh---h----hhcCCceEEEEccCCCHHHHHHHHH
Confidence 56788888899999999998889998777654321 1 2345555555444333344444443
No 310
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=43.46 E-value=46 Score=36.04 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=40.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---------Cc---------HHHHHHHHHcCCEEEEe
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---------TN---------LERRILLRAFGAEIILT 208 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~---------~~---------~~~~~~l~~~GA~V~~~ 208 (400)
.+.|+..++|-.|.+.|+..++.|.+++||-... .+ ....+.++.+|.+++.-
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~ 380 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcC
Confidence 3568899999999999999999999998885332 11 12456778889887653
No 311
>PRK05872 short chain dehydrogenase; Provisional
Probab=43.38 E-value=1.2e+02 Score=28.97 Aligned_cols=65 Identities=17% Similarity=0.128 Sum_probs=39.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHH-HHHc--CCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAF--GAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~-l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|.-|.++|......|.+++++-.. ..+++. .+.+ +.+++.+..+.+..+.++.+.+
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLE---EAELAALAAELGGDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHH
Confidence 567888888999999999999999876655432 223222 2223 4566654443333344444443
No 312
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=43.32 E-value=4.1e+02 Score=27.76 Aligned_cols=122 Identities=13% Similarity=0.147 Sum_probs=71.9
Q ss_pred HHHHHHHcCCeEEEEe-----------CCCCcHHHHHHHHHcCCEEEEeCCCCC----hhhHHHHHHHHHHhCCCce---
Q 015783 171 IAFVAAVKGYKLIVTM-----------PASTNLERRILLRAFGAEIILTDPEKG----LRGALDKAEEIVLNTPNAY--- 232 (400)
Q Consensus 171 lA~aa~~~Gl~~~Vvv-----------p~~~~~~~~~~l~~~GA~V~~~~~~~~----~~~a~~~a~~~a~~~~~~~--- 232 (400)
+..+|+..|+++++.. |.-.....+......|++.+....+.. -.++++.-.+++.+.+..+
T Consensus 262 ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~ 341 (473)
T TIGR01064 262 MIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYL 341 (473)
T ss_pred HHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchh
Confidence 4566888999988764 333455667777778999988765432 2234444444433221111
Q ss_pred --eeCCCC-Ch--HHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCC
Q 015783 233 --MFQQFD-NM--ANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE 298 (400)
Q Consensus 233 --~~~~~~-~~--~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~ 298 (400)
|-.... .. ..........+.++.+.+ +.+.||+.+-+|.++--++++ .|.+.|+++.|..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr~----rp~~PIiAvT~~~ 406 (473)
T TIGR01064 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSKY----RPNAPIIAVTPNE 406 (473)
T ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHhh----CCCCCEEEEcCCH
Confidence 100000 00 011122333445555665 478999999999988776554 6889999999865
No 313
>PRK10537 voltage-gated potassium channel; Provisional
Probab=43.19 E-value=3.6e+02 Score=27.39 Aligned_cols=97 Identities=12% Similarity=0.046 Sum_probs=57.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
+.+++..+.|+.|..++..-+..|.+++|+.++ +.+.....|.+++.-+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d-----~~~~~~~~g~~vI~GD-------------------------- 288 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL-----GLEHRLPDDADLIPGD-------------------------- 288 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc-----hhhhhccCCCcEEEeC--------------------------
Confidence 457888999999999888777778888777653 1111112232222211
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhC-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeC
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP 296 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep 296 (400)
+.. .|.+++.+ .+.+.|++....-..-.-+....|+.+++.++++...
T Consensus 289 ----~td---------~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~ 337 (393)
T PRK10537 289 ----SSD---------SAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVN 337 (393)
T ss_pred ----CCC---------HHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 111 23334433 3466677766664444445666788888888887544
No 314
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=43.11 E-value=1.2e+02 Score=30.64 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=47.1
Q ss_pred CeEEEEeCCCCcHHHHHHHHHcCC-EEEEe-CCCCChhhHHHHHHHHHHhCCCceee--CCCCChHHHHHHHHhHHHHHH
Q 015783 180 YKLIVTMPASTNLERRILLRAFGA-EIILT-DPEKGLRGALDKAEEIVLNTPNAYMF--QQFDNMANLKIHFDSTGPEIW 255 (400)
Q Consensus 180 l~~~Vvvp~~~~~~~~~~l~~~GA-~V~~~-~~~~~~~~a~~~a~~~a~~~~~~~~~--~~~~~~~~~~~g~~ti~~Ei~ 255 (400)
++-.|+...+.-..-...+..+|. ++.+| ++...-.+-.+...+...+.+-.+.+ .---||.. ..-.-|.|..
T Consensus 6 ~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~---~~v~~~~~~~ 82 (377)
T COG1454 6 LPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI---ETVEAGAEVA 82 (377)
T ss_pred cCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCH---HHHHHHHHHH
Confidence 445566666666666666777774 33333 33211123445555555554212222 22223322 2334456666
Q ss_pred hhhCCCCCEEEEecCCChhHH
Q 015783 256 EDTLGCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 256 ~Ql~~~pD~vv~pvG~Gg~~a 276 (400)
++. +|| .|+++||||.+=
T Consensus 83 ~~~--~~D-~iIalGGGS~~D 100 (377)
T COG1454 83 REF--GPD-TIIALGGGSVID 100 (377)
T ss_pred Hhc--CCC-EEEEeCCccHHH
Confidence 664 588 466899999764
No 315
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=43.08 E-value=1.5e+02 Score=28.61 Aligned_cols=51 Identities=31% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+.++.+.++. ++|-.|.+++..|+.+|.+.++++ +.++.+.+.++.+|++.
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~ 209 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATY 209 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcE
Confidence 3445666775 468899999999999998744555 33567888888888753
No 316
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.01 E-value=1.7e+02 Score=26.98 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=39.9
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCC-----------CCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHH
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPA-----------STNL-ERRILLRAFGAEIILTDPEKGLRGALDKA 221 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp~-----------~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (400)
+..+|+..+ |.-|.++|..-...|.+++++... .... .....+..+|.+++.+..+....+.+..+
T Consensus 6 k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 85 (256)
T PRK12748 6 KIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPNRV 85 (256)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 345555555 368999998888889877666433 1111 12234556788887776654433444444
Q ss_pred HH
Q 015783 222 EE 223 (400)
Q Consensus 222 ~~ 223 (400)
.+
T Consensus 86 ~~ 87 (256)
T PRK12748 86 FY 87 (256)
T ss_pred HH
Confidence 43
No 317
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=43.00 E-value=1.7e+02 Score=27.71 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=37.2
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
..+.++.+.++...+|..|.+++..++..|.+++++.. .+.+...++.+|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTR---SPEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHcCCc
Confidence 55556666777777799999999999999998766643 23455556666653
No 318
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=42.99 E-value=1.8e+02 Score=26.76 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=40.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|......|.+++++..... .........+.++..+..+....+.++.+.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPA--RARLAALEIGPAAIAVSLDVTRQDSIDRIVA 72 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHHHHhCCceEEEEccCCCHHHHHHHHH
Confidence 46788888899999999999999998776644321 1112223345556655544332334444433
No 319
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=42.99 E-value=3.2e+02 Score=27.14 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=8.9
Q ss_pred HHHHHHcCCEEEEeCCC
Q 015783 195 RILLRAFGAEIILTDPE 211 (400)
Q Consensus 195 ~~~l~~~GA~V~~~~~~ 211 (400)
.++.+.+|++|..++.+
T Consensus 108 ~D~~~r~ga~V~~v~~~ 124 (385)
T KOG2862|consen 108 ADCARRYGAEVDVVEAD 124 (385)
T ss_pred HHHHHhhCceeeEEecC
Confidence 44455555555555443
No 320
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=42.94 E-value=1.7e+02 Score=27.82 Aligned_cols=51 Identities=12% Similarity=-0.060 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
+|..+.+..+.+.-.......+++.-+-||-|..+|.....+|.+++-+..
T Consensus 19 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 19 YGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred HHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 566666666554333333346789999999999999999888877765543
No 321
>PRK07063 short chain dehydrogenase; Provisional
Probab=42.81 E-value=1.6e+02 Score=27.14 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=39.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHH--cCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRA--FGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~--~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+.++|--|.++|......|.+++++-..... ......++. .+.++..+..+.+..+.++.+.
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 567888888889999999988899987665432211 112233433 4666666554433233344333
No 322
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=42.80 E-value=2.1e+02 Score=27.51 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=37.5
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+...+.++.+.+|.. +|-.|.+++..|+. +|.+.+++.. ++.+++.++.+|++.+
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v 211 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLT 211 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEE
Confidence 444456666666665 78899999989997 4987555533 3457777788887544
No 323
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.80 E-value=1.7e+02 Score=29.72 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=43.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
++.+|+..+|.-|.++|......|.+++++-...............|++++.++-. ..+.++.+.+..
T Consensus 211 ~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~--~~~~~~~~~~~~ 278 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT--APDAPARIAEHL 278 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC--CHHHHHHHHHHH
Confidence 56777777799999999999999998777654332233333444567777766543 234455554443
No 324
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=42.75 E-value=1.6e+02 Score=29.62 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=39.6
Q ss_pred EEeCCCCcHHHHHHHHHcCCEEEEeCCCCChh-hHHHHHHHHHHhCCC-ceeeCCCC-ChHHHHHHHHhHHHHHHhhhCC
Q 015783 184 VTMPASTNLERRILLRAFGAEIILTDPEKGLR-GALDKAEEIVLNTPN-AYMFQQFD-NMANLKIHFDSTGPEIWEDTLG 260 (400)
Q Consensus 184 Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~-~a~~~a~~~a~~~~~-~~~~~~~~-~~~~~~~g~~ti~~Ei~~Ql~~ 260 (400)
|+...+.-..--..++.+|-++.++.+....+ +.+++..+..++.+- ....++.. ++.. .... -+.+..++ .
T Consensus 4 i~fG~g~l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~--~~v~-~~~~~~~~--~ 78 (386)
T cd08191 4 LLFGAGQRRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPR--SELC-DAASAAAR--A 78 (386)
T ss_pred EEECcCHHHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCH--HHHH-HHHHHHHh--c
Confidence 44444433333345666776666554432222 455555555544321 11222222 2211 1111 11233333 4
Q ss_pred CCCEEEEecCCChhHH
Q 015783 261 CVDIFVAAIGTGGTIT 276 (400)
Q Consensus 261 ~pD~vv~pvG~Gg~~a 276 (400)
++| +|+.+|||+.+=
T Consensus 79 ~~D-~IIaiGGGS~iD 93 (386)
T cd08191 79 GPD-VIIGLGGGSCID 93 (386)
T ss_pred CCC-EEEEeCCchHHH
Confidence 578 477899998764
No 325
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=42.56 E-value=1.9e+02 Score=27.33 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=35.8
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.++.+.++...+|.-|.+++..|+.+|.+.+++... ..+.+.++.+|++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 185 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGAD 185 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCC
Confidence 3444555566666666889999999999999886655443 2455566667763
No 326
>PRK06924 short chain dehydrogenase; Provisional
Probab=42.47 E-value=1.4e+02 Score=27.22 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=38.7
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKA 221 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (400)
..+++.++|.-|.++|......|.+++++.... ...........+.+++.+..+.+..+.++..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTE-NKELTKLAEQYNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc-hHHHHHHHhccCCceEEEEecCCCHHHHHHH
Confidence 467888889999999999988999877665332 1222222333466665554443323333333
No 327
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=42.18 E-value=2.7e+02 Score=25.79 Aligned_cols=53 Identities=36% Similarity=0.461 Sum_probs=35.6
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.++...++...+|..|.+++..|+.+|.+.+++.. ++.+.+.++.+|++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~ 183 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVS---SEEKAELARAAGAD 183 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHCCCC
Confidence 344555556566555789999999999999987555432 34566666667763
No 328
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=42.15 E-value=1.6e+02 Score=26.41 Aligned_cols=65 Identities=26% Similarity=0.255 Sum_probs=41.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+++.++|-.|..+|......|.+++++..... .......++..|+++..+..+.+..+.++.+.+
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 68 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVE 68 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 57778889999999998888998766654321 112334556678887766655433344544443
No 329
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=42.09 E-value=1.4e+02 Score=28.77 Aligned_cols=53 Identities=34% Similarity=0.381 Sum_probs=35.7
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.++.+.++. ++|..|.++...|+.+|...++.+ .....+...++.+|++
T Consensus 162 ~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 162 LAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGAT 214 (347)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCc
Confidence 3445566666664 568899999999999997444444 2345666777777754
No 330
>PLN02583 cinnamoyl-CoA reductase
Probab=42.09 E-value=1.5e+02 Score=28.26 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~ 188 (400)
+..+|+..+|--|.+++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 567888888999999999999999998887754
No 331
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.98 E-value=1.6e+02 Score=29.24 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Q 015783 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (400)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~ 210 (400)
.++.|. .||+..-+..-+| .|.-.-.+|+.+|++++++=.. ...|.+.++.+||++.+...
T Consensus 174 Lk~~g~-~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSGL-GPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcCC-CCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 345554 4776654444445 8877778899999999988543 23577788999999987754
No 332
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=41.76 E-value=2.6e+02 Score=25.67 Aligned_cols=118 Identities=14% Similarity=0.018 Sum_probs=61.1
Q ss_pred HHhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCCchhhhhhccCeEEEeC
Q 015783 247 FDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVT 326 (400)
Q Consensus 247 ~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~~~~~~~l~~~~~~~~~~V~ 326 (400)
|...+.++-+++. +...+|++-|++|..-++.++..+.+ -+++|+-|..-..- . .....++..+.+.
T Consensus 32 ~~~~a~~lg~~la-~~g~~V~tGG~~GiMea~~~gA~~~g--g~~vGi~p~~~~~~-------e---~~~~~~~~l~~~~ 98 (205)
T COG1611 32 YYELARELGRELA-KRGLLVITGGGPGVMEAVARGALEAG--GLVVGILPGLLHEQ-------E---PPNYEVIELITGM 98 (205)
T ss_pred HHHHHHHHHHHHH-hCCcEEEeCCchhhhhHHHHHHHHcC--CeEEEecCCCchhh-------c---cCccccceeeecC
Confidence 5556666666663 22356666666666666688888644 68899887542100 0 1122345566666
Q ss_pred HHHHHHHHHHHHHHcCCeeehhHHHH---HHHHHHHhcCCCCCCCeEEEEeCCCC
Q 015783 327 NDEAVNMARRLALEEGLLVGISSGAA---AAAAISLARRPENSGKLIAAIFPSFG 378 (400)
Q Consensus 327 d~e~~~a~~~la~~eGi~~~p~sgaa---~aaa~~l~~~~~~~~~~vVvl~t~~G 378 (400)
+-+....+... ...++++-|-+--+ ++-++-+.+.+......+.+++++.+
T Consensus 99 ~~~~Rk~~~~~-~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~ 152 (205)
T COG1611 99 DFAERKRAMVR-SADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNG 152 (205)
T ss_pred CHHHHHHHHHH-hCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchH
Confidence 66654444333 36666666642222 22333333333333345555666544
No 333
>PRK07326 short chain dehydrogenase; Provisional
Probab=41.73 E-value=1.5e+02 Score=26.68 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
+..+++.++|.-|.+++......|.+++++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 4677888889999999999988899866664
No 334
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=41.73 E-value=1.3e+02 Score=29.03 Aligned_cols=49 Identities=33% Similarity=0.467 Sum_probs=35.1
Q ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
++.+.+|. ++|..|.+++..|+.+|.+.+++. .....|....+.+|++-
T Consensus 163 ~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~ 211 (341)
T cd05281 163 SGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADV 211 (341)
T ss_pred CCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcce
Confidence 44566664 568999999999999998644554 23557777777888743
No 335
>PRK06101 short chain dehydrogenase; Provisional
Probab=41.59 E-value=1.3e+02 Score=27.38 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=40.0
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
..+++.++|--|.++|..-...|.+++++... ..+.+.+...+.++..+..+.+..+.++.+.+
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 66 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDVTDHPGTKAALS 66 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHH
Confidence 56888888999999999988899987666432 34455454445445544444333344444433
No 336
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=41.47 E-value=1.9e+02 Score=26.50 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=40.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHH-HcC-CEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLR-AFG-AEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~-~~G-A~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|.-|.++|......|.+++++-...... .....+. ..| .+++.+..+.+..+.+..+.+
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 73 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSR 73 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHH
Confidence 4678888889999999999888999876664332111 1122232 234 466666554433344444433
No 337
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=41.45 E-value=1.5e+02 Score=24.25 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCC-ChhhHHH
Q 015783 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK-GLRGALD 219 (400)
Q Consensus 141 ~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~-~~~~a~~ 219 (400)
..+..|.+.+. +..++.+.+|++++.+|.+-- ..+.+++.|.. ...+++.-.+|..-+..+... +.++.++
T Consensus 7 aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~RP--~~pIiavt~~~--~~~r~l~l~~GV~p~~~~~~~~~~~~~~~ 78 (117)
T PF02887_consen 7 AAVELAEDLNA----KAIVVFTESGRTARLISKYRP--KVPIIAVTPNE--SVARQLSLYWGVYPVLIEEFDKDTEELIA 78 (117)
T ss_dssp HHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT-T--SSEEEEEESSH--HHHHHGGGSTTEEEEECSSHSHSHHHHHH
T ss_pred HHHHHHHhcCC----CEEEEECCCchHHHHHHhhCC--CCeEEEEcCcH--HHHhhhhcccceEEEEeccccccHHHHHH
Confidence 33444555553 345556666777666655422 35555555532 222222334566665555433 3344445
Q ss_pred HHHHHHHh
Q 015783 220 KAEEIVLN 227 (400)
Q Consensus 220 ~a~~~a~~ 227 (400)
.+.+.+.+
T Consensus 79 ~a~~~~~~ 86 (117)
T PF02887_consen 79 EALEYAKE 86 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444444
No 338
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.39 E-value=1.8e+02 Score=26.92 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=23.4
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEe
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
+..+|+.++ +.-|.++|......|.++++.-
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 455566555 5799999999999999877654
No 339
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=41.37 E-value=1.7e+02 Score=27.24 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=39.4
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEe-CCC--CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTM-PAS--TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvv-p~~--~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+.++ +--|.++|......|.++++.. +.. ........+...+.+++.+..|-+..+.++.+.+..
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 445565543 5688999998989999876653 221 123345555555555544444433334455444433
No 340
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=41.27 E-value=1.1e+02 Score=31.49 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHHHHcCCeEEEEeCCCC
Q 015783 163 TTGNTGLGIAFVAAVKGYKLIVTMPAST 190 (400)
Q Consensus 163 ssGN~g~AlA~aa~~~Gl~~~Vvvp~~~ 190 (400)
+=|.+..+|+.+-+..|.++.|++|.-.
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 3388889999999999999999999853
No 341
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=41.19 E-value=1.4e+02 Score=28.55 Aligned_cols=37 Identities=32% Similarity=0.507 Sum_probs=27.9
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVT 185 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vv 185 (400)
...+.++.+.++...+|..|.+++..|+..|.+++++
T Consensus 157 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 3455566666666556999999999999999986554
No 342
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=41.13 E-value=1.3e+02 Score=23.15 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=32.7
Q ss_pred EEEeCCChHHHHHHHHHHHcC---CeEEEEeCCCCcHHHHHHH-HHcCCEEEE
Q 015783 159 LVEPTTGNTGLGIAFVAAVKG---YKLIVTMPASTNLERRILL-RAFGAEIIL 207 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~G---l~~~Vvvp~~~~~~~~~~l-~~~GA~V~~ 207 (400)
|..-++||.|.+++......| .++.++... .+++...+ +.+|.++..
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~~~~~~~~ 52 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKEYGVQATA 52 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHHCTTEEES
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHhhcccccc
Confidence 344589999999999999999 666655333 34555544 667866654
No 343
>PRK10083 putative oxidoreductase; Provisional
Probab=40.97 E-value=2.2e+02 Score=27.33 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHcCCCCCCCcEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.+.+.+.+|.+.++ .++|--|.+++..|+. +|.+.++.+.. .+.+...++.+|++-+.
T Consensus 152 ~~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 152 VTGRTGPTEQDVALI-YGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 334455666655555 4478889988888886 69876665543 56788888889986443
No 344
>PRK06182 short chain dehydrogenase; Validated
Probab=40.82 E-value=2.3e+02 Score=26.39 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=41.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|......|.+++++... ..++..+...+.+++..+-. ..+.++.+.+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~--~~~~~~~~~~ 66 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT--DEASIKAAVD 66 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC--CHHHHHHHHH
Confidence 467788888999999999998899987776543 33444455567666665532 2344444433
No 345
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=40.81 E-value=66 Score=29.03 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=32.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~ 210 (400)
-|.|.-.|+|-+|.++|.++...|-.++++.....-+. -.|.+++.+..
T Consensus 20 VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s 68 (185)
T PF04127_consen 20 VRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES 68 (185)
T ss_dssp SEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS
T ss_pred ceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc
Confidence 45677788999999999999999999999886632111 24667777663
No 346
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=40.79 E-value=1.9e+02 Score=26.12 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=41.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH--HHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE--RRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~--~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
..+|+.++|.-|.++|..-...|.++++......... ........+.++..+..+....+.+..+.+.+
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 74 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEI 74 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5677788899999999988888988777765432111 11222234566766665543344555554433
No 347
>PRK06348 aspartate aminotransferase; Provisional
Probab=40.52 E-value=2.8e+02 Score=27.46 Aligned_cols=78 Identities=8% Similarity=0.012 Sum_probs=44.5
Q ss_pred CCCCcchhhhHHHHHHHHHHcCC-CCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 129 EPCRSVKDRIGYSMITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 129 nptGSfK~Rga~~~~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
.+.|..-.|-+...... .+.|. +. ...|+.++++++|..++..+-. +-.-.|+++.-.-..-...++..|++++.
T Consensus 64 ~~~G~~~lr~~ia~~~~-~~~~~~~~--~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~ 139 (384)
T PRK06348 64 DSGGDVELIEEIIKYYS-KNYDLSFK--RNEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPII 139 (384)
T ss_pred CCCCcHHHHHHHHHHHH-HHhCCCCC--hhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEE
Confidence 34565555544433222 22232 23 2457778888888877666542 22235566654444556677788999988
Q ss_pred eCC
Q 015783 208 TDP 210 (400)
Q Consensus 208 ~~~ 210 (400)
++.
T Consensus 140 ~~~ 142 (384)
T PRK06348 140 LET 142 (384)
T ss_pred ecC
Confidence 763
No 348
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=40.49 E-value=1.4e+02 Score=27.69 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=38.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+.+|+.++|.-|.++|......|.++++.-..... ....+.++..| +++.+..+-+..+.++.+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~ 68 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVK 68 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHH
Confidence 36788888999999999999999986665432211 11223344444 45544444332344444443
No 349
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.42 E-value=1.7e+02 Score=27.16 Aligned_cols=32 Identities=28% Similarity=0.156 Sum_probs=22.6
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeC
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
+..+|+.++ +--|.++|......|.+++++-.
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r 44 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYL 44 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 344555544 36899999998889998766643
No 350
>PRK12828 short chain dehydrogenase; Provisional
Probab=40.23 E-value=1.9e+02 Score=25.83 Aligned_cols=55 Identities=18% Similarity=0.044 Sum_probs=37.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDP 210 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~ 210 (400)
++.+|+.++|--|.+++......|.+++++.....+ ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 567888888999999999988889987666543221 1223445556777766543
No 351
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=40.18 E-value=2.3e+02 Score=28.03 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=38.0
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+.+.+.++.+.+|. ++|.-|.+++..|+.+|..-++++.. ...+++.++.+|++
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 44555565555555 78999999999999999954444432 35677777888884
No 352
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=40.17 E-value=1.8e+02 Score=26.93 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=38.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHH-HHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..+|+.++|--|.++|......|.+++++-.. ..+.+.+ ..++.++..+..+....+.++.+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVEGDVTSYADNQRAV 71 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEEccCCCHHHHHHHH
Confidence 567888888999999999999999987665432 2333333 234555555544432233344333
No 353
>PLN02527 aspartate carbamoyltransferase
Probab=39.98 E-value=2.2e+02 Score=27.79 Aligned_cols=60 Identities=17% Similarity=0.090 Sum_probs=42.4
Q ss_pred HcCCCCCCCcEEEEeCCC---hHHHHHHHHHHHc-CCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeC
Q 015783 148 ESGDITPGKTVLVEPTTG---NTGLGIAFVAAVK-GYKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assG---N~g~AlA~aa~~~-Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~ 209 (400)
+.|.+. ..+|+-.+.+ |...+++..++.+ |++++++.|+.. +....+.++..|.++..++
T Consensus 145 ~~g~l~--g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 145 EIGRLD--GIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred HhCCcC--CCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 345442 2356666654 5899999998887 999999999873 4455556666788887765
No 354
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=39.98 E-value=1.6e+02 Score=29.33 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=42.9
Q ss_pred eEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCh--hhHHHHHHHHHHhCC-CceeeCCC-CChHHHHHHHHhHHHHHHh
Q 015783 181 KLIVTMPASTNLERRILLRAFGAEIILTDPEKGL--RGALDKAEEIVLNTP-NAYMFQQF-DNMANLKIHFDSTGPEIWE 256 (400)
Q Consensus 181 ~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~--~~a~~~a~~~a~~~~-~~~~~~~~-~~~~~~~~g~~ti~~Ei~~ 256 (400)
+..|+...+.-..--..++.+|-++.++.+...+ .+.+++..+..++.+ .....+.. .||.. ....++.+
T Consensus 4 p~~i~~G~g~l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~------~~v~~~~~ 77 (357)
T cd08181 4 PTKVYFGENCVEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSL------ETIMEAVE 77 (357)
T ss_pred CCeEEECCCHHHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCH------HHHHHHHH
Confidence 4455555554333344566677777766543221 233455555444432 11112222 13222 12234555
Q ss_pred hhC-CCCCEEEEecCCChhHH
Q 015783 257 DTL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 257 Ql~-~~pD~vv~pvG~Gg~~a 276 (400)
++. .++| +|+.+|||+.+=
T Consensus 78 ~~~~~~~D-~IIavGGGSviD 97 (357)
T cd08181 78 IAKKFNAD-FVIGIGGGSPLD 97 (357)
T ss_pred HHHhcCCC-EEEEeCCchHHH
Confidence 542 3578 567899999774
No 355
>PRK07023 short chain dehydrogenase; Provisional
Probab=39.94 E-value=1.3e+02 Score=27.33 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=39.9
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHH
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDK 220 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~ 220 (400)
+.+|+.++|.-|.++|......|.+++++.....+ ......|.++..+..+....+.++.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP----SLAAAAGERLAEVELDLSDAAAAAA 62 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch----hhhhccCCeEEEEEeccCCHHHHHH
Confidence 46888888999999999988899997776543221 1234467777766555433344444
No 356
>PRK12831 putative oxidoreductase; Provisional
Probab=39.81 E-value=1.1e+02 Score=31.81 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=39.7
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---C--cHHHHHHHHHcCCEEEEe
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---T--NLERRILLRAFGAEIILT 208 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~---~--~~~~~~~l~~~GA~V~~~ 208 (400)
+.|+..++||.|.-+|..+.++|.+++++.... + ....+..++..|.+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 468999999999999999999999988886543 2 223445566788887754
No 357
>PRK12827 short chain dehydrogenase; Provisional
Probab=39.77 E-value=2.1e+02 Score=25.85 Aligned_cols=68 Identities=21% Similarity=0.136 Sum_probs=43.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-cHHH----HHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLER----RILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~~~----~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|--|.++|......|.+++++..... ...+ ...+...|.++..+..+....+.++.+.+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 79 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALD 79 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 46788888899999999998889998776543211 1222 23445567787766655433444444443
No 358
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=39.67 E-value=1.2e+02 Score=30.31 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=40.5
Q ss_pred cEEEEeCC---ChHHHHHHHH-HHHcCCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeCC
Q 015783 157 TVLVEPTT---GNTGLGIAFV-AAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDP 210 (400)
Q Consensus 157 ~~vv~ass---GN~g~AlA~a-a~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~~ 210 (400)
.+|+-.+. +|.+.+++.. +..+|++++++-|++. +...++.++..|.++..+..
T Consensus 160 ~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d 219 (338)
T PRK08192 160 MHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQ 219 (338)
T ss_pred CEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 35566666 6889999976 6677999999999963 55556667778998887653
No 359
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=39.55 E-value=2.4e+02 Score=27.72 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=38.9
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+...+.++.+.++. ++|..|.+++..|+.+|.+.++.+.. ...+...++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 34455666666665 67999999999999999875555432 45677777888874
No 360
>PRK07831 short chain dehydrogenase; Provisional
Probab=39.52 E-value=2e+02 Score=26.48 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=38.5
Q ss_pred CcEEEEeCCC-hHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHH-cCC-EEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTG-NTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRA-FGA-EIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assG-N~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~-~GA-~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+.++| .-|.++|......|.+++++-..... ......++. +|. ++..+..+....+.++.+.+.
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 4566666666 69999999999999985554322111 122233333 563 565555443333445555443
No 361
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.46 E-value=2e+02 Score=27.06 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=38.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHH
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (400)
+++.+++|--|.++|.... .|.+++++-..... ......++..|.+++.+..+....+.++.+.+..+
T Consensus 4 ~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred EEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 3444455778888888875 68877666432211 12233455568787766554433344555544433
No 362
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=39.44 E-value=2.1e+02 Score=27.64 Aligned_cols=57 Identities=30% Similarity=0.327 Sum_probs=38.5
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
.+.+.+.++.+.++. ++|.-|.+++..|+.+|.+.++++.. ...+...++.+|++-+
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~v 211 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHT 211 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEE
Confidence 355666677777775 56888999999999999884333322 2456666677777543
No 363
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=39.32 E-value=3.4e+02 Score=25.66 Aligned_cols=53 Identities=34% Similarity=0.456 Sum_probs=35.0
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.+.++...++. ++|..|.+++..|+..|.+.++..+ ...+++.++.+|++.+
T Consensus 156 ~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 208 (336)
T cd08276 156 GPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHV 208 (336)
T ss_pred cCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 445555554554 6788999999999999988555433 3456666666666543
No 364
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=39.32 E-value=3.8e+02 Score=26.66 Aligned_cols=80 Identities=14% Similarity=0.039 Sum_probs=43.3
Q ss_pred CCCcchhhhHHHHHHHHHHcCC--CCCCCcEEEEeCCChHHHHHHHHHHH-c-CCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 130 PCRSVKDRIGYSMITDAEESGD--ITPGKTVLVEPTTGNTGLGIAFVAAV-K-GYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 130 ptGSfK~Rga~~~~~~a~~~G~--~~~g~~~vv~assGN~g~AlA~aa~~-~-Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+.|.-+.|-+...... ...|. +.+ ...|+.+.+++.+..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDP-ATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCc-cceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 4566677755443322 22243 332 1357777777887766655432 1 112234444433334455577899999
Q ss_pred EEeCCC
Q 015783 206 ILTDPE 211 (400)
Q Consensus 206 ~~~~~~ 211 (400)
+.++-+
T Consensus 142 ~~vp~~ 147 (396)
T PRK09147 142 YFLNCD 147 (396)
T ss_pred EEeccC
Confidence 988753
No 365
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.25 E-value=1.8e+02 Score=27.25 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=36.8
Q ss_pred CcEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~assG--N~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+++..++ .-|.++|......|.++++.-.........+.+...+.+++.+..|-+..+.++.+.+.+
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 78 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAEL 78 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHH
Confidence 3445555443 578888988888998866553322112344455443333444444433334455554443
No 366
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=39.18 E-value=3e+02 Score=26.93 Aligned_cols=53 Identities=32% Similarity=0.435 Sum_probs=36.3
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.++.+.++. ++|..|.++...|+.+|.+.++++.. ...+...++.+|++
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 3445566666666 67999999999999999873344322 34556666778873
No 367
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=39.14 E-value=3.6e+02 Score=25.96 Aligned_cols=117 Identities=22% Similarity=0.126 Sum_probs=65.3
Q ss_pred HHHHHHhhhC-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccC---------CCCCCCchhhhhhc-
Q 015783 250 TGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---------ENAGYVPSILDVQL- 318 (400)
Q Consensus 250 i~~Ei~~Ql~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~---------g~~~~~~~~l~~~~- 318 (400)
-..||.+-+. ..++.+|++|-+-++++ ...+++.. ++.||||.|.-.+.... ++++++.+...++.
T Consensus 55 ~~~~i~~~l~~~~ik~lVIACNTASa~a--l~~LR~~~-~iPVvGviPaik~A~~~t~~~~IgViaT~~Tvks~~y~~~i 131 (269)
T COG0796 55 RTLEIVDFLLERGIKALVIACNTASAVA--LEDLREKF-DIPVVGVIPAIKPAVALTRNGRIGVIATPATVKSNAYRDLI 131 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecchHHHHH--HHHHHHhC-CCCEEEeccchHHHHHhccCCeEEEEeccchhccHHHHHHH
Confidence 3345555542 23999999999877766 46677766 78999999876544321 22333333322221
Q ss_pred -----cCeEEEeCHHHHHHHHHHHHHHcCCeeehhHHHHHHHHHHHhcCCCCCCCeEEEEeCCC
Q 015783 319 -----LDEVIKVTNDEAVNMARRLALEEGLLVGISSGAAAAAAISLARRPENSGKLIAAIFPSF 377 (400)
Q Consensus 319 -----~~~~~~V~d~e~~~a~~~la~~eGi~~~p~sgaa~aaa~~l~~~~~~~~~~vVvl~t~~ 377 (400)
-..+..+...+ ...|. ++|+.-++..=..+. ....-....+-.+|++-|+|
T Consensus 132 ~~~~~~~~V~~la~p~----lV~lv-E~g~~~~~~~~~~l~---~~l~~~~~~~~DtlVLGCTH 187 (269)
T COG0796 132 ARFAPDCEVESLACPE----LVPLV-EEGIRGGPVALEVLK---EYLPPLQEAGPDTLVLGCTH 187 (269)
T ss_pred HHhCCCCEEEEecCcc----hHHHH-hcccccCHHHHHHHH---HHhcchhccCCCEEEEeCcC
Confidence 12344444444 33444 778887776333333 22222223445677888876
No 368
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=39.09 E-value=2.7e+02 Score=24.53 Aligned_cols=70 Identities=19% Similarity=0.111 Sum_probs=39.4
Q ss_pred HHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCC
Q 015783 197 LLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272 (400)
Q Consensus 197 ~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~G 272 (400)
....+|.+++.-+. .+...++..+.+.......++++.+.+.|..... +-.++.+++. ..|.+++|.-.|
T Consensus 60 ~~~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~----~i~~l~~~~~-~~~~vi~p~~~G 129 (195)
T TIGR03552 60 AARNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPR----ELKRLLAAAT-EGDVVIAPDRGG 129 (195)
T ss_pred HHHhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHH----HHHHHHHhcc-cCCEEEEecCCC
Confidence 34556777654333 2456677777665543334566767676654211 2234445442 367788887666
No 369
>PRK07102 short chain dehydrogenase; Provisional
Probab=39.00 E-value=2.5e+02 Score=25.53 Aligned_cols=67 Identities=16% Similarity=0.030 Sum_probs=40.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHH-cCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRA-FGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~-~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+++.++|.-|.+++......|.+++++....... .....++. .+.++..+..+....+.++...
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 70 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFL 70 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHH
Confidence 3567888889999999999999999877665432111 11222222 3567766655533233343333
No 370
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=38.89 E-value=1.8e+02 Score=27.77 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=33.8
Q ss_pred CCcEEEEeCCChHHHHHHHHHHHc-CCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 155 GKTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~-Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+.+.++...+|..|.+++..|+.+ |++++++... ..+.+.++.+|++-
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~ 197 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHH 197 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCE
Confidence 456666666789999999999987 8876555432 35666667778743
No 371
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=38.80 E-value=1.9e+02 Score=27.21 Aligned_cols=51 Identities=25% Similarity=0.460 Sum_probs=36.4
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+.+.++...++...+|..|.+++..|+..|.+.+++.+. .+...++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 334555566666656999999999999999986665532 566666778864
No 372
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.73 E-value=2.1e+02 Score=28.34 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=37.6
Q ss_pred EEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHH----HHHcCCEEEEeC
Q 015783 158 VLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRIL----LRAFGAEIILTD 209 (400)
Q Consensus 158 ~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~----l~~~GA~V~~~~ 209 (400)
+|+-.+. .|.+++++.+++.+|++++++.|+.. +...+.. .+..|+++..+.
T Consensus 157 kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 157 KFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred EEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 4555555 48999999999999999999999863 2233322 345788887764
No 373
>PRK06180 short chain dehydrogenase; Provisional
Probab=38.71 E-value=2e+02 Score=26.87 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=40.5
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-HcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+..+|.-|.+++......|.+++++... +.+...+. ..+.++..+..+.+..+.+..+.+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~ 70 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS---EAARADFEALHPDRALARLLDVTDFDAIDAVVA 70 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC---HHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHH
Confidence 457888888999999999998899987766543 23333333 344455555444333344444444
No 374
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=38.68 E-value=1.5e+02 Score=29.51 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=41.4
Q ss_pred EEeCCCCcHHHHHHHHHcCC-EEEEeCCCCChh-hHHHHHHHHHHhCCCcee-eCCCC-ChHHHHHHHHhHHHHHHhhhC
Q 015783 184 VTMPASTNLERRILLRAFGA-EIILTDPEKGLR-GALDKAEEIVLNTPNAYM-FQQFD-NMANLKIHFDSTGPEIWEDTL 259 (400)
Q Consensus 184 Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~~~~-~a~~~a~~~a~~~~~~~~-~~~~~-~~~~~~~g~~ti~~Ei~~Ql~ 259 (400)
|+...+.-..-...++.+|+ ++.++.+....+ +..+...+..++.+-.+. ..... ||.. ....++.+++.
T Consensus 4 i~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~------~~v~~~~~~~~ 77 (370)
T cd08551 4 IIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTL------SNVDAAVAAYR 77 (370)
T ss_pred EEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCH------HHHHHHHHHHH
Confidence 44444443344445666774 555554432223 445555555544321122 22222 2221 12234555553
Q ss_pred -CCCCEEEEecCCChhHH
Q 015783 260 -GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 260 -~~pD~vv~pvG~Gg~~a 276 (400)
.++| +|+.+|||+.+=
T Consensus 78 ~~~~d-~IiaiGGGs~~D 94 (370)
T cd08551 78 EEGCD-GVIAVGGGSVLD 94 (370)
T ss_pred hcCCC-EEEEeCCchHHH
Confidence 3578 477899998764
No 375
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=38.54 E-value=2.2e+02 Score=27.39 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=46.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHH--HHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR--ILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~--~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+||..|+.-|.++|...+..|.+++++-........+ +.-+.+|.+|...+-|.+..+.++...+
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~ 76 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLED 76 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHH
Confidence 5678888888999999999999999999998764332222 2223467788777665443344444443
No 376
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=38.47 E-value=48 Score=32.81 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=27.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~ 188 (400)
.|..-++|+||.|+|..++..|-+++++.-+
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence 4788899999999999999999989988764
No 377
>PRK06841 short chain dehydrogenase; Provisional
Probab=38.39 E-value=1.9e+02 Score=26.49 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=25.9
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
++.+|+..+|--|.++|......|.+++++-.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r 47 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDR 47 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 46777777899999999999999998666544
No 378
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=38.32 E-value=3e+02 Score=26.16 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=37.1
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
.+.+.++.+.++. ++|..|.+++..|+.+|.++++..+ ++.+.+.++.+|++-+
T Consensus 160 ~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~ 213 (338)
T cd08254 160 AGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEV 213 (338)
T ss_pred ccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEE
Confidence 4445555666664 5788999999999999988544433 3456667777887543
No 379
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=38.24 E-value=1.3e+02 Score=29.84 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=38.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
+.++..++|..|..++..+...+-.-.|++|.-.-......++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4577777888877666554323333467788877777778888899999988754
No 380
>PRK08017 oxidoreductase; Provisional
Probab=38.20 E-value=2.3e+02 Score=25.79 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=36.5
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~ 210 (400)
+.+|+..+|.-|.++|......|.+++++... ..+.+.++..|.+.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 46777777999999999988889987665432 3455555667877766653
No 381
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.10 E-value=1e+02 Score=26.70 Aligned_cols=46 Identities=28% Similarity=0.305 Sum_probs=35.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
+|...+|+.|..++......|.++++++....+... ..+.+++..+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESC
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceee
Confidence 566778999999999999999999999977543333 5566666554
No 382
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=37.91 E-value=59 Score=35.25 Aligned_cols=51 Identities=27% Similarity=0.263 Sum_probs=38.5
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---------Cc---------HHHHHHHHHcCCEEEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---------TN---------LERRILLRAFGAEIIL 207 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~---------~~---------~~~~~~l~~~GA~V~~ 207 (400)
..|+..++|-.|.+.|.+.++.|.+++||=... .+ ......++.+|.+++.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 568999999999999999999999988884321 11 1235567778887764
No 383
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=37.89 E-value=2.4e+02 Score=27.17 Aligned_cols=55 Identities=33% Similarity=0.442 Sum_probs=39.3
Q ss_pred HHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.+.++...++. ++|..|.++...|+.+|.+.++.+.. .+.+...++.+|++
T Consensus 154 ~~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 208 (341)
T cd08262 154 VRRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGAD 208 (341)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCc
Confidence 344555565566666 56999999999999999876555443 46777777888874
No 384
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=37.88 E-value=43 Score=32.11 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=25.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~ 188 (400)
-|+..++|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4788999999999999999999999998643
No 385
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=37.62 E-value=71 Score=29.45 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=24.9
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCC
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPAS 189 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp~~ 189 (400)
.++|..+|+ |-+-..||.+|++.|+++.|++...
T Consensus 42 ATTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~ 77 (207)
T PF11814_consen 42 ATTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTD 77 (207)
T ss_pred hceecccCCCCCcChHHHHHHHHHcCCceEEEECCC
Confidence 356666653 5566667777888899999999764
No 386
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=37.53 E-value=2e+02 Score=26.72 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=35.7
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCe-EEEEeCCCCcHHHHHHHHHcC
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFG 202 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~-~~Vvvp~~~~~~~~~~l~~~G 202 (400)
..+.+.++.+.++. +.|..|.++...|+.+|.+ ++++. ....+...++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~~---~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGVD---PDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEC---CCHHHHHHHHHcC
Confidence 34555666666665 6799999999999999988 44432 2455666777777
No 387
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=37.49 E-value=3.1e+02 Score=26.30 Aligned_cols=49 Identities=24% Similarity=0.258 Sum_probs=33.8
Q ss_pred CCCCCcEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~G-l~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+.++.+.++.. +|..|.+++..|+.+| .+++++.. ++.+.+.++.+|++
T Consensus 165 ~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~ 214 (340)
T cd05284 165 LDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGAD 214 (340)
T ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCc
Confidence 44445555555 7779999999999999 67655433 34566777888874
No 388
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.40 E-value=1.7e+02 Score=27.22 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=36.0
Q ss_pred CcEEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHH-cCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPT--TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~as--sGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~-~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.. ++--|.++|......|.++++.-.......+.+.+.. .|. .+.+..|-+..+.++.+.+.
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~ 77 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDS-ELVFRCDVASDDEINQVFAD 77 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCC-ceEEECCCCCHHHHHHHHHH
Confidence 34455553 4568899999988899988775332222334444433 343 23333333333444444433
No 389
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=37.36 E-value=2.3e+02 Score=27.62 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=24.7
Q ss_pred HHHhhhCCCCCEEEEecC-CChhHHhHHH----HHHhcCCCcEEEEEeCCC
Q 015783 253 EIWEDTLGCVDIFVAAIG-TGGTITGTGR----FLKMMNKEIKVVGVEPAE 298 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG-~Gg~~aGi~~----~~k~~~~~~rvi~Vep~~ 298 (400)
+|.+++ ...|.||+..| +||+-+|++. .+++.+. -+++|-+..
T Consensus 77 ~I~~~l-e~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~--~~~~vvt~P 124 (303)
T cd02191 77 AIDNIP-VHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGT--LTVAVVTLP 124 (303)
T ss_pred HHHHHH-cCCCEEEEEeccCCccchhHHHHHHHHHHHhCC--CEEEEEeCC
Confidence 344444 45888888876 3455566654 4455554 466665544
No 390
>PLN00175 aminotransferase family protein; Provisional
Probab=37.30 E-value=3.5e+02 Score=27.27 Aligned_cols=77 Identities=10% Similarity=-0.002 Sum_probs=42.4
Q ss_pred CCcchhhhHHHHHHHHHHcCC-CCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 131 CRSVKDRIGYSMITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 131 tGSfK~Rga~~~~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
.|.-..|-+...... .+.|. +++ ...|+.+++++.|..++..+- ++-.-.|+++.-.-..-...++..|++++.++
T Consensus 91 ~G~~~Lr~aia~~~~-~~~g~~~~~-~~~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~ 167 (413)
T PLN00175 91 FGVPELNSAIAERFK-KDTGLVVDP-EKEVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVT 167 (413)
T ss_pred CCCHHHHHHHHHHHH-HHhCCCCCC-CCCEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEE
Confidence 355555544433222 23342 233 124666777788877666643 33223455544333445666788999999886
Q ss_pred C
Q 015783 210 P 210 (400)
Q Consensus 210 ~ 210 (400)
-
T Consensus 168 ~ 168 (413)
T PLN00175 168 L 168 (413)
T ss_pred C
Confidence 4
No 391
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=37.29 E-value=1.7e+02 Score=28.39 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=11.2
Q ss_pred cHHHHHHHHHcCCEEEEeCCC
Q 015783 191 NLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 191 ~~~~~~~l~~~GA~V~~~~~~ 211 (400)
++.-+++++..|-+|+.++..
T Consensus 111 P~~vl~qLraagV~vv~v~~~ 131 (300)
T COG4558 111 PATVLDQLRAAGVPVVTVPEQ 131 (300)
T ss_pred cHHHHHHHHHcCCcEEEcCCC
Confidence 444555555555555555543
No 392
>PRK06483 dihydromonapterin reductase; Provisional
Probab=37.29 E-value=2.7e+02 Score=25.10 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=36.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
++.+++.++|--|.++|......|.+++++-... ....+.++..|++.+.++
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~D 54 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTH--YPAIDGLRQAGAQCIQAD 54 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc--hhHHHHHHHcCCEEEEcC
Confidence 4678888889999999999888999877764332 223445556677666554
No 393
>PRK08267 short chain dehydrogenase; Provisional
Probab=37.29 E-value=1.6e+02 Score=27.07 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=39.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-Hc-CCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AF-GAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~-~~-GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
++.+|+..+|.-|.+++......|.+++++... ..+...+. .. |.++..+..+.+..+.+.++.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 68 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDIN---EAGLAALAAELGAGNAWTGALDVTDRAAWDAALA 68 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 356788888999999999988899887776543 22333222 12 4555555444333334444443
No 394
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=37.27 E-value=1.5e+02 Score=29.20 Aligned_cols=55 Identities=25% Similarity=0.315 Sum_probs=34.7
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.+.+|.+.+| .++|.-|.++...|+.+|.+.+++.... ..+....+.+|++.+.
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 33344445444 7779999999999999998755443322 2334455678886443
No 395
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=37.22 E-value=2.2e+02 Score=27.01 Aligned_cols=50 Identities=28% Similarity=0.434 Sum_probs=35.3
Q ss_pred CCCCC-cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 152 ITPGK-TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 152 ~~~g~-~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+.++. +.++...+|..|.+++..|+.+|.+.++.... ..+++.++.+|++
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~ 192 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGAS 192 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCc
Confidence 44555 55555556999999999999999986555433 3455667778874
No 396
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=37.21 E-value=2e+02 Score=28.65 Aligned_cols=79 Identities=14% Similarity=-0.003 Sum_probs=45.0
Q ss_pred CCCcchhhhHHHHHHHHHHcCC---CCCCCcEEEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 130 PCRSVKDRIGYSMITDAEESGD---ITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 130 ptGSfK~Rga~~~~~~a~~~G~---~~~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+.|.-..|-+....... ..|. +.+ ...|+.+++++.+..++..+-. -|=...|++|.-.-..-....+..|+++
T Consensus 63 ~~G~~~lr~aia~~~~~-~~~~~~~~~~-~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~ 140 (393)
T TIGR03538 63 TKGLPELRQAIARWLER-RFDLPTGVDP-ERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEP 140 (393)
T ss_pred CCCCHHHHHHHHHHHHH-hhCCcccCCC-CceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeE
Confidence 45766667654433322 2222 222 1357777778888776665432 2433456776533333345577899999
Q ss_pred EEeCC
Q 015783 206 ILTDP 210 (400)
Q Consensus 206 ~~~~~ 210 (400)
+.++-
T Consensus 141 ~~v~~ 145 (393)
T TIGR03538 141 YFLNC 145 (393)
T ss_pred EEeec
Confidence 98864
No 397
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.92 E-value=3e+02 Score=27.44 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=48.6
Q ss_pred HHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
+|-+++.+.+| ..++.-++|--|...-..|+.+|-.=+|++. ..+.|+++.+.+||+++.-.
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d--~~~~Rle~Ak~~Ga~~~~~~ 221 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVITD--LVANRLELAKKFGATVTDPS 221 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEee--cCHHHHHHHHHhCCeEEeec
Confidence 45555666665 4688899999999999999999988777764 35688888888999987644
No 398
>PRK07201 short chain dehydrogenase; Provisional
Probab=36.68 E-value=1.4e+02 Score=31.91 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=43.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|.-|.++|..-...|.+++++...... ......++..|.+++.+..+....+.++.+.+
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~ 440 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVK 440 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 457788888999999999988889987776543211 12233455567777766555433344554444
No 399
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=36.39 E-value=3.6e+02 Score=25.08 Aligned_cols=53 Identities=34% Similarity=0.525 Sum_probs=34.5
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.+.++...++...+|..|.+++..++.+|.+.+++... ..+.+.++.+|++
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 186 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGAD 186 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCc
Confidence 3445555566665556999999999999999875444332 3455555666653
No 400
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=36.33 E-value=2.1e+02 Score=27.97 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=30.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
.|+.+++...+..++..+- ++-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 4666666677666655443 2222344555433334455667889999988654
No 401
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=36.25 E-value=3.4e+02 Score=26.14 Aligned_cols=51 Identities=27% Similarity=0.426 Sum_probs=35.6
Q ss_pred cCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCC
Q 015783 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA 203 (400)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA 203 (400)
.+.+.++.+.++.. +|..|.++...|+.+|++.+++... ..+.+.++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCC
Confidence 34455555666655 7999999999999999986655443 455666667776
No 402
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=36.15 E-value=1.1e+02 Score=28.12 Aligned_cols=93 Identities=20% Similarity=0.235 Sum_probs=45.8
Q ss_pred HHHHHHHhHHHHH----HhhhC------CCCCEEEEecC-CChhHHhHH----HHHHhcCCCcEEEEEeCCCCccccCCC
Q 015783 242 NLKIHFDSTGPEI----WEDTL------GCVDIFVAAIG-TGGTITGTG----RFLKMMNKEIKVVGVEPAERSVISGEN 306 (400)
Q Consensus 242 ~~~~g~~ti~~Ei----~~Ql~------~~pD~vv~pvG-~Gg~~aGi~----~~~k~~~~~~rvi~Vep~~~~~l~~g~ 306 (400)
+|..||.+++.++ .+++. ...|.|++..| +|||-+|++ ..+++.+++..++++-...... ....
T Consensus 94 n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~-e~~~ 172 (216)
T PF00091_consen 94 NWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS-EGVV 172 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG-GSHH
T ss_pred cccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc-cccc
Confidence 4555777654443 33331 34676666554 344556655 4445666565555443322211 1000
Q ss_pred -C--CCCchhhhhhccCeEEEeCHHHHHHHHH
Q 015783 307 -A--GYVPSILDVQLLDEVIKVTNDEAVNMAR 335 (400)
Q Consensus 307 -~--~~~~~~l~~~~~~~~~~V~d~e~~~a~~ 335 (400)
+ ......-..+..|.++.++++.+.+.+.
T Consensus 173 ~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~ 204 (216)
T PF00091_consen 173 EPYNALLSLSELQEYADSVILFDNDALYKICK 204 (216)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHH
T ss_pred ccceehhHHHHHHHhCCEEEEEcHHHHHHHHh
Confidence 0 0011122345678888888888776553
No 403
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=36.09 E-value=2.5e+02 Score=25.49 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=26.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
++.+++.++|.-|.+++......|.+++++..
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r 44 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGR 44 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeC
Confidence 56788888899999999998888987766543
No 404
>PLN02827 Alcohol dehydrogenase-like
Probab=35.69 E-value=2.5e+02 Score=27.99 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=39.0
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.+.+.+|.+.+|. ++|--|.+++..|+.+|.+.++.+.. .+.+.+.++.+|++-+
T Consensus 187 ~~~~~~~g~~VlV~-G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~ 242 (378)
T PLN02827 187 NVADVSKGSSVVIF-GLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDF 242 (378)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEE
Confidence 33455566555555 67889999999999999865554432 4567788888998643
No 405
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=35.58 E-value=2.8e+02 Score=25.91 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=36.4
Q ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
++...++...+|..|.+++..|+.+|.+.++... ...+...++.+|+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 3456666666699999999999999997554433 356777787788863
No 406
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=35.48 E-value=2.6e+02 Score=25.17 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=38.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHH-HHHcCCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~-l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+|+..+|--|.+++......|..+++.... ..+.+. ....+.++..+..+....+.++.+.
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTR---VEKLEALAAELGERVKIFPANLSDRDEVKALG 71 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC---HHHHHHHHHHhCCceEEEEccCCCHHHHHHHH
Confidence 467788888999999999998889855443322 233332 2344666655544433334444443
No 407
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=35.45 E-value=4.2e+02 Score=26.45 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=41.8
Q ss_pred CeEEEEeCCCCcHHHHHHHHHcCC-EEEEeCCCCC-hhhHHHHHHHHHHhCC-CceeeCCCC-ChHHHHHHHHhHHHHHH
Q 015783 180 YKLIVTMPASTNLERRILLRAFGA-EIILTDPEKG-LRGALDKAEEIVLNTP-NAYMFQQFD-NMANLKIHFDSTGPEIW 255 (400)
Q Consensus 180 l~~~Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~~-~~~a~~~a~~~a~~~~-~~~~~~~~~-~~~~~~~g~~ti~~Ei~ 255 (400)
.+..|+...+.-..--..++.+|. ++.++.+..- ..+.++...+..++.+ .....+... ||.. . ...|+.
T Consensus 3 ~p~~i~~G~g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~----~v~~~~ 76 (376)
T cd08193 3 TPPRIVFGAGSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPE--A----VVEAAV 76 (376)
T ss_pred CCCeEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCH--H----HHHHHH
Confidence 344555555543333445666664 4544543321 1124555555544432 122122221 2221 1 123444
Q ss_pred hhhC-CCCCEEEEecCCChhHH
Q 015783 256 EDTL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 256 ~Ql~-~~pD~vv~pvG~Gg~~a 276 (400)
+++. .++| +|+.+|||+.+=
T Consensus 77 ~~~~~~~~D-~IIaiGGGs~iD 97 (376)
T cd08193 77 EAARAAGAD-GVIGFGGGSSMD 97 (376)
T ss_pred HHHHhcCCC-EEEEeCCchHHH
Confidence 4442 3578 677899999774
No 408
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=35.44 E-value=2.4e+02 Score=27.24 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+.++.+.++ .+.|..|.+++..|+.+|++++++.+. ..+...++.+|++-+.
T Consensus 167 ~~~g~~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGV-VGIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEE-ECCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 455556666 457999999999999999976555433 3566666778875443
No 409
>PRK06125 short chain dehydrogenase; Provisional
Probab=35.42 E-value=1.3e+02 Score=27.78 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=39.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHH-HHHHHHH-cCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE-RRILLRA-FGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~-~~~~l~~-~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+++.++|.-|.++|......|.+++++-....... ....++. .|.++..+..+.+..+.++.+.+
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 56788888899999999998889997666543221111 1222332 36666655544333344444443
No 410
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=35.10 E-value=1.3e+02 Score=29.67 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=17.4
Q ss_pred CCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeC
Q 015783 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP 296 (400)
Q Consensus 261 ~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep 296 (400)
++| +|+.+|||+.+= +++++... ...++|.|-.
T Consensus 77 ~~d-~IIavGGGs~~D-~aK~ia~~-~~~p~i~VPT 109 (349)
T cd08550 77 EAD-VIIGVGGGKTLD-TAKAVADR-LDKPIVIVPT 109 (349)
T ss_pred CCC-EEEEecCcHHHH-HHHHHHHH-cCCCEEEeCC
Confidence 467 566788877653 33333221 1345565543
No 411
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=35.05 E-value=1.5e+02 Score=30.72 Aligned_cols=76 Identities=26% Similarity=0.109 Sum_probs=49.4
Q ss_pred CcchhhhHHHHHHH-HHHcCC---CC---CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------
Q 015783 132 RSVKDRIGYSMITD-AEESGD---IT---PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-------------- 190 (400)
Q Consensus 132 GSfK~Rga~~~~~~-a~~~G~---~~---~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-------------- 190 (400)
++..++...-.+.+ ..+.+. .. .....|+..++|-.|.+.|..+++.|.+++||-....
T Consensus 112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~ 191 (471)
T PRK12810 112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKL 191 (471)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccC
Confidence 45666665554443 223331 10 1124689999999999999999999999998853321
Q ss_pred c----HHHHHHHHHcCCEEEE
Q 015783 191 N----LERRILLRAFGAEIIL 207 (400)
Q Consensus 191 ~----~~~~~~l~~~GA~V~~ 207 (400)
+ ....+.+..+|.+++.
T Consensus 192 ~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 192 EKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CHHHHHHHHHHHHhCCcEEEe
Confidence 1 1235567888988764
No 412
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=35.04 E-value=54 Score=29.76 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=18.8
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
..+..-++|.-+.++-++ +.+-.+.||.
T Consensus 36 ~~l~DIGaGtGsi~iE~a--~~~p~~~v~A 63 (187)
T COG2242 36 DRLWDIGAGTGSITIEWA--LAGPSGRVIA 63 (187)
T ss_pred CEEEEeCCCccHHHHHHH--HhCCCceEEE
Confidence 578888888777776666 5555555544
No 413
>PRK07832 short chain dehydrogenase; Provisional
Probab=34.80 E-value=1.5e+02 Score=27.59 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=32.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHcCCEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEI 205 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~GA~V 205 (400)
+.+|+.++|--|.++|......|.+++++-..... ......++..|+++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~ 51 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTV 51 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence 35788888999999999999999886665433211 11233455566654
No 414
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=34.78 E-value=3.2e+02 Score=26.07 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=36.3
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
+...+.++.+.++. ++|..|.+++..|+.+|++.++++.. ...+...++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 34445565565665 67899999999999999884444433 34566666777765
No 415
>PRK06847 hypothetical protein; Provisional
Probab=34.64 E-value=55 Score=32.24 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=27.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
..|+..++|-.|.++|...++.|++++|+=
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E 34 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRRAGIAVDLVE 34 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 458889999999999999999999998884
No 416
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.59 E-value=1.1e+02 Score=30.74 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=33.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcC-------CeEEEEeCCCC--cHHHHHHHHHcCCE
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKG-------YKLIVTMPAST--NLERRILLRAFGAE 204 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~G-------l~~~Vvvp~~~--~~~~~~~l~~~GA~ 204 (400)
+..|..-++|+||.|+|......| -++.++..+.. .....+.|...+-+
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N 68 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHEN 68 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCC
Confidence 456889999999999999998876 57888875542 22234455544433
No 417
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=34.52 E-value=2.2e+02 Score=28.16 Aligned_cols=102 Identities=11% Similarity=0.126 Sum_probs=62.0
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (400)
.+|..-+.|+.|.++|..++.+|.+++++-+... ... . + +... ...+ ++.++ .+.+.++-
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~---~~~--~-~---~~~~-------~~l~---ell~~-aDiVil~l 206 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN---KDL--D-F---LTYK-------DSVK---EAIKD-ADIISLHV 206 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh---Hhh--h-h---hhcc-------CCHH---HHHhc-CCEEEEeC
Confidence 4688889999999999999999999888865421 110 0 0 0011 1122 23333 24444433
Q ss_pred CCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhH--HhHHHHHHh
Q 015783 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKM 284 (400)
Q Consensus 237 ~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~--aGi~~~~k~ 284 (400)
..++. -...+..++..++ +++.+++-+|-|..+ ..+..++++
T Consensus 207 P~t~~----t~~li~~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 207 PANKE----SYHLFDKAMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred CCcHH----HHHHHhHHHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 22222 2234566777777 478899999999987 455666654
No 418
>PRK09126 hypothetical protein; Provisional
Probab=34.28 E-value=50 Score=32.83 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=26.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
.|+..++|-.|.++|.+.++.|++++|+=
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E 33 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIE 33 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEe
Confidence 47889999999999999999999999884
No 419
>PLN02342 ornithine carbamoyltransferase
Probab=34.23 E-value=1.3e+02 Score=30.02 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=40.6
Q ss_pred HcCCCCCCCcEEEEeCC-ChHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHHHHHcCC-EEEEeC
Q 015783 148 ESGDITPGKTVLVEPTT-GNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGA-EIILTD 209 (400)
Q Consensus 148 ~~G~~~~g~~~vv~ass-GN~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~l~~~GA-~V~~~~ 209 (400)
+.|.+. |. +|+-.+. .|...+++..++++|++++++-|++. +...++..+..|. ++..++
T Consensus 188 ~~G~l~-gl-kva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 188 HIGRLE-GT-KVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred HhCCcC-CC-EEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 445543 23 3444444 68899999999999999999999964 3344555666774 666554
No 420
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=34.23 E-value=3.5e+02 Score=28.54 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=67.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
.+++..-+-|+-|.++|..++.+|+++++|=|... .. ....+|.+.. + .+ ++.++. +.+.++
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~---~~~~~g~~~~--~----l~-------ell~~a-DiV~l~ 201 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYIS-PE---RAAQLGVELV--S----LD-------ELLARA-DFITLH 201 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hh---HHHhcCCEEE--c----HH-------HHHhhC-CEEEEc
Confidence 35788889999999999999999999888866432 22 2234565432 1 22 233332 455443
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhH--HhHHHHHHh
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKM 284 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~--aGi~~~~k~ 284 (400)
-..++.. ...+..|.++++ +++.+++-+|-|+.+ ..+..++++
T Consensus 202 lP~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 202 TPLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred cCCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 3233222 234456778887 578999999999987 455666655
No 421
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=34.18 E-value=5e+02 Score=26.14 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=22.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~ 188 (400)
|...++|+.+.+++.+++..|+.+.+++..
T Consensus 3 iliiG~G~~~~~l~~~~~~~~~~~~~~~~~ 32 (423)
T TIGR00877 3 VLVIGNGGREHALAWKLAQSPLVKYVYVAP 32 (423)
T ss_pred EEEECCChHHHHHHHHHHhCCCccEEEEEC
Confidence 556777888888888888888777777543
No 422
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=34.17 E-value=53 Score=28.07 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=26.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~ 189 (400)
++..++|.-+.+++..++.+|++++|+=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4678899999999999999999999998774
No 423
>PLN02256 arogenate dehydrogenase
Probab=34.14 E-value=4.5e+02 Score=25.58 Aligned_cols=117 Identities=10% Similarity=0.045 Sum_probs=66.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
...|...+.|+.|.++|...+..|.+++++-+.. . ....+.+|... +. +..+ ......+.+++.
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~--~--~~~a~~~gv~~--~~---~~~e-------~~~~~aDvVila 99 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD--Y--SDIAAELGVSF--FR---DPDD-------FCEEHPDVVLLC 99 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc--H--HHHHHHcCCee--eC---CHHH-------HhhCCCCEEEEe
Confidence 3467777899999999999999998877776553 1 23344577643 21 1111 111222444432
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhC---CCCCEEEEecCC--ChhHHhHHHHHHhcC-CCcEEEEEeCCCCccc
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTL---GCVDIFVAAIGT--GGTITGTGRFLKMMN-KEIKVVGVEPAERSVI 302 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~---~~pD~vv~pvG~--Gg~~aGi~~~~k~~~-~~~rvi~Vep~~~~~l 302 (400)
-. +.. ..|+.+++. -+++.+|+-+++ |..+. .+.+.. .+.++|+.-|-..+..
T Consensus 100 vp--~~~--------~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~----~~~~~l~~~~~~V~~HPmaG~e~ 158 (304)
T PLN02256 100 TS--ILS--------TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKN----LLLQVLPEEFDILCTHPMFGPES 158 (304)
T ss_pred cC--HHH--------HHHHHHhhhhhccCCCCEEEecCCchHHHHH----HHHHhCCCCCeEEecCCCCCCCC
Confidence 11 111 133444431 247789999998 33333 333322 3568999988765543
No 424
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=34.14 E-value=70 Score=28.58 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=30.2
Q ss_pred HhHHHHHHhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEE
Q 015783 248 DSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294 (400)
Q Consensus 248 ~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~V 294 (400)
...+.++.+| |-.||+|+.=.|=|. ..++|+.+|++++++-
T Consensus 54 ~~a~~~L~~~-Gf~PDvI~~H~GWGe-----~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 54 ARAARQLRAQ-GFVPDVIIAHPGWGE-----TLFLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHc-CCCCCEEEEcCCcch-----hhhHHHhCCCCcEEEE
Confidence 3444555555 668998887777665 4568999999999985
No 425
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=33.88 E-value=3.8e+02 Score=24.62 Aligned_cols=129 Identities=11% Similarity=0.000 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHH
Q 015783 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219 (400)
Q Consensus 140 ~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~ 219 (400)
...+..+.+.|. ...=++.++-|+-.++....+.++ ++.|=...=...+..+.....||+.++.+.- + .
T Consensus 23 ~~~~~al~~~Gi----~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~---~---~ 91 (204)
T TIGR01182 23 LPLAKALIEGGL----RVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQLRQAVDAGAQFIVSPGL---T---P 91 (204)
T ss_pred HHHHHHHHHcCC----CEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEECCCC---C---H
Confidence 334444555554 223344455566666667766665 4444444445667777777788888877653 1 2
Q ss_pred HHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCCCCCE-EEEecCCChhHHhHHHHHHhcCCCcEEE
Q 015783 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI-FVAAIGTGGTITGTGRFLKMMNKEIKVV 292 (400)
Q Consensus 220 ~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~-vv~pvG~Gg~~aGi~~~~k~~~~~~rvi 292 (400)
+..+.+.+. +..++.+.-.| .||.+-+....|. =+.|.+..|.. ...+.++.-.++++++
T Consensus 92 ~v~~~~~~~-~i~~iPG~~Tp-----------tEi~~A~~~Ga~~vKlFPA~~~GG~-~yikal~~plp~i~~~ 152 (204)
T TIGR01182 92 ELAKHAQDH-GIPIIPGVATP-----------SEIMLALELGITALKLFPAEVSGGV-KMLKALAGPFPQVRFC 152 (204)
T ss_pred HHHHHHHHc-CCcEECCCCCH-----------HHHHHHHHCCCCEEEECCchhcCCH-HHHHHHhccCCCCcEE
Confidence 233344443 45555443332 3555544333443 35665532211 1235555556777776
No 426
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=1.8e+02 Score=26.96 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc---HHHHHHHHHcCC-EEEEeCCCCChhhHHHHHHHHHHhCCCce
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN---LERRILLRAFGA-EIILTDPEKGLRGALDKAEEIVLNTPNAY 232 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~---~~~~~~l~~~GA-~V~~~~~~~~~~~a~~~a~~~a~~~~~~~ 232 (400)
..|.+-++| .|-..|..|+..| .|+.-+..+ ..-++.++.+|- +|+..-+|.. .|+.
T Consensus 74 ~~VLEIGtG-sGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~---------------~G~~ 134 (209)
T COG2518 74 DRVLEIGTG-SGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGS---------------KGWP 134 (209)
T ss_pred CeEEEECCC-chHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc---------------cCCC
Confidence 468888887 6788888888888 555444332 223445777887 6666554421 1222
Q ss_pred eeCCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCC
Q 015783 233 MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271 (400)
Q Consensus 233 ~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~ 271 (400)
-..||+-...+ .+-.++=.-+.+||. .--.+|+|+|.
T Consensus 135 ~~aPyD~I~Vt-aaa~~vP~~Ll~QL~-~gGrlv~PvG~ 171 (209)
T COG2518 135 EEAPYDRIIVT-AAAPEVPEALLDQLK-PGGRLVIPVGS 171 (209)
T ss_pred CCCCcCEEEEe-eccCCCCHHHHHhcc-cCCEEEEEEcc
Confidence 22333332221 223333345678983 23568999994
No 427
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=33.67 E-value=2.4e+02 Score=28.17 Aligned_cols=55 Identities=18% Similarity=0.085 Sum_probs=36.7
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
..++.+++|..|..++..+-..+=.-.|++|.-.-......+...|++++.++-+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 4567777777776665544322223457777766666677777889999998754
No 428
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.65 E-value=3.7e+02 Score=24.57 Aligned_cols=64 Identities=27% Similarity=0.215 Sum_probs=40.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|......|.++++..... ....+.++..+...+.++-. ..+.++.+.+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~--~~~~~~~~~~ 71 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG--NRDQVKKSKE 71 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC--CHHHHHHHHH
Confidence 5678888889999999999988998876654332 33344455456555555432 2334444443
No 429
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=33.61 E-value=1.6e+02 Score=30.51 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=38.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCC---------Cc---------HHHHHHHHHcCCEEEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---------TN---------LERRILLRAFGAEIIL 207 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~---------~~---------~~~~~~l~~~GA~V~~ 207 (400)
..|+..++|-.|.+.|..+++.|.+++|+-... .+ ....++++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 568999999999999999999999988874221 11 1345667788888764
No 430
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=33.58 E-value=2.3e+02 Score=30.17 Aligned_cols=50 Identities=28% Similarity=0.239 Sum_probs=31.9
Q ss_pred CcEEEEeCCChHH---HHHHHHHHHcCCeEEEEeCCCCcHH----HHHHHHHcCCEE
Q 015783 156 KTVLVEPTTGNTG---LGIAFVAAVKGYKLIVTMPASTNLE----RRILLRAFGAEI 205 (400)
Q Consensus 156 ~~~vv~assGN~g---~AlA~aa~~~Gl~~~Vvvp~~~~~~----~~~~l~~~GA~V 205 (400)
.+.+|.++.||.| ..+|......|+++.|++|...... ...+++.+|..+
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 3566777776654 3455555567999999997743322 245566777654
No 431
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=33.56 E-value=2.7e+02 Score=27.17 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=31.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
.|+.+++++.+..++..+- .+-.-.|++|.-.-..-....+.+|++++.++-+
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 135 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT 135 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC
Confidence 4666666666666555432 2222345555544445566678889999988654
No 432
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.55 E-value=2.1e+02 Score=26.94 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=23.1
Q ss_pred CcEEEEeCCC--hHHHHHHHHHHHcCCeEEEEe
Q 015783 156 KTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 156 ~~~vv~assG--N~g~AlA~aa~~~Gl~~~Vvv 186 (400)
+..||+..++ .-|.++|......|.+++++-
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEec
Confidence 4456665554 689999999999999877753
No 433
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=33.51 E-value=61 Score=23.87 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=22.7
Q ss_pred eCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 015783 162 PTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (400)
Q Consensus 162 assGN~g~AlA~aa~~~Gl~~~Vvvp~~ 189 (400)
-++|-.|.+.|+..++.|.+++|+=-.+
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 4678999999999999999999885443
No 434
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.33 E-value=2.4e+02 Score=26.17 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=35.1
Q ss_pred CcEEEEeC--CChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHH-HHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPT--TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~as--sGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
+..+|+.. ++--|.++|..-...|.++++.-. +......+.+ +.++.+++.+..|-...+.++.+.+.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~ 78 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGF-GRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADR 78 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecC-ccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHH
Confidence 34555554 466888888888888988666432 2112222222 33454544444443333444444443
No 435
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=33.31 E-value=2.3e+02 Score=27.95 Aligned_cols=53 Identities=8% Similarity=-0.118 Sum_probs=30.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
.|+.++++..+..++..+- ..-.-.|+++.-.-..-....+.+|++++.++.+
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 4666666677666554432 2222234444433344556678899999888654
No 436
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=33.31 E-value=3.8e+02 Score=26.31 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=46.9
Q ss_pred eEEEEeCCCCcHHHHHHHH-HcC-CEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhh
Q 015783 181 KLIVTMPASTNLERRILLR-AFG-AEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDT 258 (400)
Q Consensus 181 ~~~Vvvp~~~~~~~~~~l~-~~G-A~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql 258 (400)
+..|++..+.-..--+.++ ..| -++.++.+....+...++..+..++.+ .+...-..++. .....++.+++
T Consensus 2 p~~i~~g~g~l~~l~~~l~~~~~~~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~~------~~~v~~~~~~~ 74 (339)
T cd08173 2 PRDVVVGHGVLEKIPNVLRDLLLGGRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVIVEDAT------YEEVEKVESSA 74 (339)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCCeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEEeCCCC------HHHHHHHHHHh
Confidence 3455555554333333444 234 355554433223334444444444432 22111111221 12224455554
Q ss_pred C-CCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCC
Q 015783 259 L-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297 (400)
Q Consensus 259 ~-~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~ 297 (400)
. .++| +|+.+|||+.+= ++++... ...+++|.|-..
T Consensus 75 ~~~~~d-~iIaiGGGs~~D-~aK~~a~-~~~~p~i~iPTT 111 (339)
T cd08173 75 RDIGAD-FVIGVGGGRVID-VAKVAAY-KLGIPFISVPTA 111 (339)
T ss_pred hhcCCC-EEEEeCCchHHH-HHHHHHH-hcCCCEEEecCc
Confidence 3 2577 567788887653 2333322 234566666543
No 437
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=33.21 E-value=1.8e+02 Score=29.95 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=38.5
Q ss_pred EEEEeCC---ChHHHHHHHHHHHc-CCeEEEEeCCCC--cHHHHHHHHHcCCEEEEeC
Q 015783 158 VLVEPTT---GNTGLGIAFVAAVK-GYKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (400)
Q Consensus 158 ~vv~ass---GN~g~AlA~aa~~~-Gl~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~ 209 (400)
+|+-.+. +|.+.+++..++.+ |++++++-|++. +...++.++..|++|..++
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 4555556 58899999996665 999999999864 4444566667788887765
No 438
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=33.02 E-value=3.9e+02 Score=24.59 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=45.7
Q ss_pred eEEEEeCCC--CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhh
Q 015783 181 KLIVTMPAS--TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDT 258 (400)
Q Consensus 181 ~~~Vvvp~~--~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql 258 (400)
+.+++.... .-..-...+...|++|+.+... .+..+...+...+.+..+...+.+-. . .........++.+++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Dl~-~-~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDIN---QELVDKGLAAYRELGIEAHGYVCDVT-D-EDGVQAMVSQIEKEV 85 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHHHHhcCCceEEEEcCCC-C-HHHHHHHHHHHHHhC
Confidence 344444443 3344566677789999988644 22333333333332222222222211 1 122344555777776
Q ss_pred CCCCCEEEEecCCCh
Q 015783 259 LGCVDIFVAAIGTGG 273 (400)
Q Consensus 259 ~~~pD~vv~pvG~Gg 273 (400)
+.+|++|.+.|..+
T Consensus 86 -~~id~li~~ag~~~ 99 (265)
T PRK07097 86 -GVIDILVNNAGIIK 99 (265)
T ss_pred -CCCCEEEECCCCCC
Confidence 56999999998753
No 439
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=33.02 E-value=4.1e+02 Score=24.78 Aligned_cols=54 Identities=24% Similarity=0.422 Sum_probs=37.8
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
+.+.+.++...++...+|..|.+++..++..|.++++... + .+...++.+|++-
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~ 191 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADP 191 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCE
Confidence 4455666666666666789999999999999998665543 2 4555566677643
No 440
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=32.94 E-value=1.4e+02 Score=31.57 Aligned_cols=53 Identities=11% Similarity=-0.030 Sum_probs=41.6
Q ss_pred cEEEEeCC---ChHHHHHHHHHHHcC-CeEEEEeCCCC--cHHHHHHHHHcCCEEEEeC
Q 015783 157 TVLVEPTT---GNTGLGIAFVAAVKG-YKLIVTMPAST--NLERRILLRAFGAEIILTD 209 (400)
Q Consensus 157 ~~vv~ass---GN~g~AlA~aa~~~G-l~~~Vvvp~~~--~~~~~~~l~~~GA~V~~~~ 209 (400)
.+|+-.+. +|.+.+++..++.+| ++++++.|++. +...+..++..|+.+..+.
T Consensus 175 lkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 175 IHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 45666666 688999999999998 99999999864 4455566777899887765
No 441
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=32.94 E-value=3.1e+02 Score=25.91 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=33.4
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V 205 (400)
..++...+|..|.+++..|+.+|.+++++.+ ...+++.++.+|++-
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 194 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASE 194 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcE
Confidence 4455555699999999999999998544433 346777777888753
No 442
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=32.67 E-value=1.5e+02 Score=28.88 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=41.6
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc--HHHHHH-HHHcCCEEEEeC
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRIL-LRAFGAEIILTD 209 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~--~~~~~~-l~~~GA~V~~~~ 209 (400)
+.|.+. |.+..++.-.+|..++++..++++|++++++-|+... ...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 356543 2343444334899999999999999999999998632 233333 466798887664
No 443
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=32.60 E-value=2.2e+02 Score=27.58 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=35.0
Q ss_pred CCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.++.+.++...+|..|.+++..|+.+|.+.++.. . ..+.+.++.+|++
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~ 200 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGAD 200 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCC
Confidence 4555666666668999999999999999766554 2 2566777778874
No 444
>PRK06197 short chain dehydrogenase; Provisional
Probab=32.45 E-value=2.2e+02 Score=27.10 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=39.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHc--CCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAF--GAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|..-...|.+++++....... .....+... +.++..+..+....+.++.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 87 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAAD 87 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHH
Confidence 4677777778899999998888899877765432211 112233322 4566555544332334444433
No 445
>PRK05693 short chain dehydrogenase; Provisional
Probab=32.31 E-value=3.7e+02 Score=24.93 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=35.7
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
..+|+..+|--|.++|......|.+++++... ..+...+...|.+.+.++
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~D 52 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLD 52 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEee
Confidence 46788888999999999998899987766543 334455555676666555
No 446
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=32.28 E-value=55 Score=33.46 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=24.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~ 189 (400)
||..++|-.|.+.|.+|++.|.++.++=+..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~ 32 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGG 32 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCc
Confidence 6889999999999999999999999986654
No 447
>PRK12829 short chain dehydrogenase; Provisional
Probab=32.27 E-value=2.9e+02 Score=25.21 Aligned_cols=32 Identities=28% Similarity=0.175 Sum_probs=26.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
++.+|+..+|.-|++++......|.+++++.-
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 56788888899999999999889998666553
No 448
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=32.07 E-value=2.2e+02 Score=28.56 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=42.3
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHcCC-EEEEeCCCCChh-hHHHHHHHHHHhCCC-ceeeCCC-CChHHHHHHHHhHHHHH
Q 015783 179 GYKLIVTMPASTNLERRILLRAFGA-EIILTDPEKGLR-GALDKAEEIVLNTPN-AYMFQQF-DNMANLKIHFDSTGPEI 254 (400)
Q Consensus 179 Gl~~~Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~~~~-~a~~~a~~~a~~~~~-~~~~~~~-~~~~~~~~g~~ti~~Ei 254 (400)
-++..|+...+.-..--+.++.+|. ++.++.+..-.+ +..+...+..++.+- ....+.. .||.. ....|+
T Consensus 5 ~~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~------~~v~~~ 78 (379)
T TIGR02638 5 ILNETSYFGAGAIEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTI------TVVKAG 78 (379)
T ss_pred cCCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCH------HHHHHH
Confidence 3455666666554444456677774 555554332111 234444444444321 1222222 12221 122234
Q ss_pred HhhhC-CCCCEEEEecCCChhH
Q 015783 255 WEDTL-GCVDIFVAAIGTGGTI 275 (400)
Q Consensus 255 ~~Ql~-~~pD~vv~pvG~Gg~~ 275 (400)
.+++. .++| +|+.+|||+.+
T Consensus 79 ~~~~~~~~~D-~IiaiGGGSvi 99 (379)
T TIGR02638 79 VAAFKASGAD-YLIAIGGGSPI 99 (379)
T ss_pred HHHHHhcCCC-EEEEeCChHHH
Confidence 33332 3578 46789999977
No 449
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=31.93 E-value=93 Score=30.32 Aligned_cols=43 Identities=33% Similarity=0.360 Sum_probs=25.9
Q ss_pred HHHhhhCCCCCEEEEecC-CChhHHhHHHHH----HhcCCCcEEEEEeCCC
Q 015783 253 EIWEDTLGCVDIFVAAIG-TGGTITGTGRFL----KMMNKEIKVVGVEPAE 298 (400)
Q Consensus 253 Ei~~Ql~~~pD~vv~pvG-~Gg~~aGi~~~~----k~~~~~~rvi~Vep~~ 298 (400)
+|.+++ ...|.||+..| +||+-+|++..+ ++.+ .-+++|-+..
T Consensus 77 ~I~~~l-~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g--~~~~~vvt~P 124 (304)
T cd02201 77 EIKEAL-EGADMVFITAGMGGGTGTGAAPVIAKIAKEMG--ALTVAVVTKP 124 (304)
T ss_pred HHHHHH-hCCCEEEEeeccCCCcchhHHHHHHHHHHHcC--CCEEEEEeCC
Confidence 444555 45898888888 566667766544 3333 3456665544
No 450
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.91 E-value=4.1e+02 Score=24.59 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=45.9
Q ss_pred eEEEEeCC----CCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhC-CC-ce-eeCCCCChHHHHHHHHhHHHH
Q 015783 181 KLIVTMPA----STNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNT-PN-AY-MFQQFDNMANLKIHFDSTGPE 253 (400)
Q Consensus 181 ~~~Vvvp~----~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~-~~-~~-~~~~~~~~~~~~~g~~ti~~E 253 (400)
+.+++... +.-..-.+.+...|++|+.+.......+..+ ++..+. ++ .. +.....++. ....+..+
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~Dv~d~~----~v~~~~~~ 80 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVR---ELADTLEGQESLLLPCDVTSDE----EITACFET 80 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHH---HHHHHcCCCceEEEecCCCCHH----HHHHHHHH
Confidence 45555553 4555666777778999998754311112222 233322 12 22 222223332 33445567
Q ss_pred HHhhhCCCCCEEEEecCCC
Q 015783 254 IWEDTLGCVDIFVAAIGTG 272 (400)
Q Consensus 254 i~~Ql~~~pD~vv~pvG~G 272 (400)
+.+++ +++|.+|.++|..
T Consensus 81 ~~~~~-g~ld~lv~nag~~ 98 (257)
T PRK08594 81 IKEEV-GVIHGVAHCIAFA 98 (257)
T ss_pred HHHhC-CCccEEEECcccC
Confidence 77777 5799999988754
No 451
>PLN03139 formate dehydrogenase; Provisional
Probab=31.85 E-value=3.6e+02 Score=27.36 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=65.6
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
.++|..-+-|+.|.++|..++.+|++++++=+...+.. .....|++. +. ..+ +++.+. +.+.++
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~---~~~~~g~~~--~~-------~l~---ell~~s-DvV~l~ 262 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE---LEKETGAKF--EE-------DLD---AMLPKC-DVVVIN 262 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh---hHhhcCcee--cC-------CHH---HHHhhC-CEEEEe
Confidence 35688888999999999999999999876644322222 223345432 11 122 233332 455543
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhH--HhHHHHHHh
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI--TGTGRFLKM 284 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~--aGi~~~~k~ 284 (400)
--.++.. ...+..|++.++ +++.+++-+|-|+.+ ..+..++++
T Consensus 263 lPlt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 263 TPLTEKT----RGMFNKERIAKM--KKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred CCCCHHH----HHHhCHHHHhhC--CCCeEEEECCCCchhhHHHHHHHHHc
Confidence 3222222 234567888887 578999999999987 355566654
No 452
>PRK12743 oxidoreductase; Provisional
Probab=31.82 E-value=4e+02 Score=24.35 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceee--CCCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEec
Q 015783 192 LERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF--QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAI 269 (400)
Q Consensus 192 ~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~--~~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pv 269 (400)
..-.+.+...|++|+.+.... ....++..+.....+..+.. ....++. .......|+.+++ +.+|.||.+.
T Consensus 16 ~~~a~~l~~~G~~V~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~----~~~~~~~~~~~~~-~~id~li~~a 88 (256)
T PRK12743 16 KACALLLAQQGFDIGITWHSD--EEGAKETAEEVRSHGVRAEIRQLDLSDLP----EGAQALDKLIQRL-GRIDVLVNNA 88 (256)
T ss_pred HHHHHHHHHCCCEEEEEeCCC--hHHHHHHHHHHHhcCCceEEEEccCCCHH----HHHHHHHHHHHHc-CCCCEEEECC
Confidence 445566667899998774321 12222222222222322222 2333333 3345666777777 4799999998
Q ss_pred CCCh
Q 015783 270 GTGG 273 (400)
Q Consensus 270 G~Gg 273 (400)
|.+.
T Consensus 89 g~~~ 92 (256)
T PRK12743 89 GAMT 92 (256)
T ss_pred CCCC
Confidence 8643
No 453
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=31.81 E-value=82 Score=24.71 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=28.8
Q ss_pred HhhhCCCCCEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCc
Q 015783 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS 300 (400)
Q Consensus 255 ~~Ql~~~pD~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~ 300 (400)
+++.=...|.+|.-+..|...-.++..++.+..++-|+.|+..+.-
T Consensus 5 ~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~ 50 (84)
T PF11760_consen 5 LRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRF 50 (84)
T ss_dssp HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--E
T ss_pred HHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCE
Confidence 3443235788888888888888999999999999999999999874
No 454
>PRK05875 short chain dehydrogenase; Provisional
Probab=31.67 E-value=2.6e+02 Score=25.91 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=39.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHc--CCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAF--GAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~ 222 (400)
++.+|+.++|.-|.++|......|.+++++...... ......+... +.++..+..+....+.+..+.
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAV 77 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHH
Confidence 467888888999999999999999987666532111 1122333333 345655544433233443333
No 455
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=31.62 E-value=1e+02 Score=35.33 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=38.6
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------c----HHHHHHHHHcCCEEEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--------------N----LERRILLRAFGAEIIL 207 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--------------~----~~~~~~l~~~GA~V~~ 207 (400)
+.|+.-++|..|.++|++.++.|++++||=.... + ....+.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 4688899999999999999999999998854321 1 1224567778888765
No 456
>PRK06836 aspartate aminotransferase; Provisional
Probab=31.52 E-value=4.5e+02 Score=26.15 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=32.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCC
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (400)
.|+.+++++.+..+++.+- ..-...|+++.-.-..-...++.+|++++.++.+
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~ 150 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecC
Confidence 4666667777776655432 2222345555533333455677899999988754
No 457
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=31.43 E-value=4.9e+02 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=27.9
Q ss_pred cEEEEeCCChHHHHHHHHHH-HcCCeEEEEeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAA-VKGYKLIVTMPA 188 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~-~~Gl~~~Vvvp~ 188 (400)
+.|..-++|..|.++|+.++ ..|++++++=+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~ 342 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDIN 342 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCC
Confidence 46888899999999999988 889999998654
No 458
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=31.39 E-value=3.4e+02 Score=26.11 Aligned_cols=50 Identities=26% Similarity=0.434 Sum_probs=34.6
Q ss_pred CCCCCCcEEEEeCCChHHHHHHHHHHHcC-CeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 151 ~~~~g~~~vv~assGN~g~AlA~aa~~~G-l~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.++.+.++. ++|..|.+++..|+.+| .++++ +. ....+...++.+|++
T Consensus 163 ~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~ 213 (345)
T cd08286 163 KVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGAT 213 (345)
T ss_pred CCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCC
Confidence 34455666664 57999999999999999 55433 33 245667777778874
No 459
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.33 E-value=1.6e+02 Score=25.47 Aligned_cols=83 Identities=20% Similarity=0.101 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeCCCCChHHHHHHHHhHHHHHHhhhCC-CCCEEEEecCC
Q 015783 193 ERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGT 271 (400)
Q Consensus 193 ~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~~-~pD~vv~pvG~ 271 (400)
...+.++..|.+|+..+-..+-+++++.| .+++.+.+.+... -.+|.+...++.+.+.. ..+.|. +..
T Consensus 31 via~~l~d~GfeVi~~g~~~tp~e~v~aA---~~~dv~vIgvSsl------~g~h~~l~~~lve~lre~G~~~i~--v~~ 99 (143)
T COG2185 31 VIARALADAGFEVINLGLFQTPEEAVRAA---VEEDVDVIGVSSL------DGGHLTLVPGLVEALREAGVEDIL--VVV 99 (143)
T ss_pred HHHHHHHhCCceEEecCCcCCHHHHHHHH---HhcCCCEEEEEec------cchHHHHHHHHHHHHHHhCCcceE--Eee
Confidence 34556778899988776543333333333 2333344444332 24778888888888742 244444 223
Q ss_pred ChhH-HhHHHHHHhcC
Q 015783 272 GGTI-TGTGRFLKMMN 286 (400)
Q Consensus 272 Gg~~-aGi~~~~k~~~ 286 (400)
||++ -+=...+++++
T Consensus 100 GGvip~~d~~~l~~~G 115 (143)
T COG2185 100 GGVIPPGDYQELKEMG 115 (143)
T ss_pred cCccCchhHHHHHHhC
Confidence 3333 23355666655
No 460
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=31.30 E-value=2.5e+02 Score=27.06 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=38.3
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcH-HHHHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL-ERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~-~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+|+.++|--|.++|......|.+++++....... .....++..+.++..+..+-+..+.++.+.+
T Consensus 7 k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence 5677887788889999988888898776664332111 1122333334555555444332344444433
No 461
>PRK06482 short chain dehydrogenase; Provisional
Probab=31.20 E-value=3.5e+02 Score=25.06 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=39.4
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHH-HcCCEEEEeCCCCChhhHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEKGLRGALDKA 221 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~-~~GA~V~~~~~~~~~~~a~~~a 221 (400)
++.+|+.++|.-|.++|......|.+++++... +.++..+. ..+.++..+..+.+..+.++.+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRR---PDALDDLKARYGDRLWVLQLDVTDSAAVRAV 66 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhccCceEEEEccCCCHHHHHHH
Confidence 356888888999999999988899987776543 23333332 2355555554443333344443
No 462
>PRK05854 short chain dehydrogenase; Provisional
Probab=31.07 E-value=2.6e+02 Score=26.91 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=37.7
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHc--CCEEEEeCCCCChhhHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAF--GAEIILTDPEKGLRGALDKAE 222 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~-~~~~~~l~~~--GA~V~~~~~~~~~~~a~~~a~ 222 (400)
+..||+.++|--|.++|..-...|.+++++...... ......+... +.++..+..+....+.++.+.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~ 84 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALG 84 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHH
Confidence 466777777888888888888889887666543211 1122333322 456655544432233444443
No 463
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=31.04 E-value=1.8e+02 Score=27.48 Aligned_cols=93 Identities=12% Similarity=0.042 Sum_probs=47.3
Q ss_pred HHHHHHHHHc--CCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHH-HhCCCce---eeCCCCChHH
Q 015783 169 LGIAFVAAVK--GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV-LNTPNAY---MFQQFDNMAN 242 (400)
Q Consensus 169 ~AlA~aa~~~--Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a-~~~~~~~---~~~~~~~~~~ 242 (400)
..+..+++.+ |.+..-+-..+.-..-.+.....|-.|.++++. .+..+.+.+.. ++. +.. +-++|.++..
T Consensus 70 ~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~---~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e 145 (243)
T PRK03692 70 ISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGK---PEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQ 145 (243)
T ss_pred HHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCC---HHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHH
Confidence 4556666555 433111111122223344445678899999875 34444454443 333 322 1245544321
Q ss_pred HHHHHHhHHHHHHhhhC-CCCCEEEEecCCCh
Q 015783 243 LKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGG 273 (400)
Q Consensus 243 ~~~g~~ti~~Ei~~Ql~-~~pD~vv~pvG~Gg 273 (400)
. .+|.+++. ..||.|+++.|.-=
T Consensus 146 ----~----~~i~~~I~~s~~dil~VglG~Pk 169 (243)
T PRK03692 146 ----R----QALFERIHASGAKIVTVAMGSPK 169 (243)
T ss_pred ----H----HHHHHHHHhcCCCEEEEECCCcH
Confidence 1 23455553 36999999998754
No 464
>PRK08068 transaminase; Reviewed
Probab=31.01 E-value=4.5e+02 Score=26.00 Aligned_cols=78 Identities=12% Similarity=-0.086 Sum_probs=43.5
Q ss_pred CCcchhhhHHHHHHHHHHcCC-CCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeC
Q 015783 131 CRSVKDRIGYSMITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (400)
Q Consensus 131 tGSfK~Rga~~~~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~ 209 (400)
.|.-..|-+....... +.|. +.++ ..|+.+++|+.+..++..+ ..+-.-.|++|.-.-..-...++..|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~-~~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPE-TEVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCC-ccEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 4666666554443321 2342 3332 2466677777877665433 233334566665443344556778999999887
Q ss_pred CC
Q 015783 210 PE 211 (400)
Q Consensus 210 ~~ 211 (400)
-+
T Consensus 147 ~~ 148 (389)
T PRK08068 147 LI 148 (389)
T ss_pred cc
Confidence 53
No 465
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=30.99 E-value=2.8e+02 Score=27.53 Aligned_cols=55 Identities=33% Similarity=0.393 Sum_probs=36.9
Q ss_pred HcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHc-CCEE
Q 015783 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAF-GAEI 205 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~-GA~V 205 (400)
+.+.+.++.+.++. ++|-.|.+++..|+..|...++++.. .+.+++.++.+ |+++
T Consensus 178 ~~~~~~~g~~VlV~-g~G~vG~~~~~la~~~g~~~vi~~~~--~~~~~~~~~~~~~~~v 233 (386)
T cd08283 178 ELAEVKPGDTVAVW-GCGPVGLFAARSAKLLGAERVIAIDR--VPERLEMARSHLGAET 233 (386)
T ss_pred hhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCcEE
Confidence 34445555555555 67888999999999999864444433 35677777777 5543
No 466
>PRK07024 short chain dehydrogenase; Provisional
Probab=30.91 E-value=2.7e+02 Score=25.64 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=40.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHH----HHHcCCEEEEeCCCCChhhHHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL----LRAFGAEIILTDPEKGLRGALDKAEEI 224 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~----l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (400)
++.+|+.++|--|.++|......|.+++++... ..+... +...+ ++..+..+.+..+.+.++.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~ 71 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARR---TDALQAFAARLPKAA-RVSVYAADVRDADALAAAAAD 71 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHH
Confidence 467888888999999999988899977666433 222222 22223 666665554434455555443
No 467
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=30.89 E-value=2.6e+02 Score=27.99 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=40.5
Q ss_pred EEEEeCCCCcHHHHHHHHHcCC-EEEEeCCCCCh-hhHHHHHHHHHHhCCC-ceeeCCCC-ChHHHHHHHHhHHHHHHhh
Q 015783 182 LIVTMPASTNLERRILLRAFGA-EIILTDPEKGL-RGALDKAEEIVLNTPN-AYMFQQFD-NMANLKIHFDSTGPEIWED 257 (400)
Q Consensus 182 ~~Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~~~-~~a~~~a~~~a~~~~~-~~~~~~~~-~~~~~~~g~~ti~~Ei~~Q 257 (400)
..|+...+.-..--..++.+|. ++.++.+..-. .+.+++..+..++.+- ....+... ||.. ....|+.++
T Consensus 5 ~~i~~G~g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~------~~v~~~~~~ 78 (374)
T cd08189 5 PKLFVGSGSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTI------ENVEAGLAL 78 (374)
T ss_pred ceEEECcCHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCH------HHHHHHHHH
Confidence 3445554443333445566774 55555433211 1244555555544321 12122222 2221 112344444
Q ss_pred hC-CCCCEEEEecCCChhHH
Q 015783 258 TL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 258 l~-~~pD~vv~pvG~Gg~~a 276 (400)
+. .++| +|+.+|||+.+=
T Consensus 79 ~~~~~~d-~IIaiGGGS~~D 97 (374)
T cd08189 79 YRENGCD-AILAVGGGSVID 97 (374)
T ss_pred HHhcCCC-EEEEeCCccHHH
Confidence 32 3578 577899998774
No 468
>PRK06139 short chain dehydrogenase; Provisional
Probab=30.84 E-value=3.1e+02 Score=26.86 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=46.2
Q ss_pred eEEEEeCCC--CcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCce--eeCCCCChHHHHHHHHhHHHHHHh
Q 015783 181 KLIVTMPAS--TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAY--MFQQFDNMANLKIHFDSTGPEIWE 256 (400)
Q Consensus 181 ~~~Vvvp~~--~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~--~~~~~~~~~~~~~g~~ti~~Ei~~ 256 (400)
+.+++...+ .-......+...|++|+.+..+ .+..++..+..++.+... +.....++.. ...+..++.+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~---~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~----v~~~~~~~~~ 80 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARD---EEALQAVAEECRALGAEVLVVPTDVTDADQ----VKALATQAAS 80 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHHHhcCCcEEEEEeeCCCHHH----HHHHHHHHHH
Confidence 344555443 3445566777789999988754 233333333333322222 2222333332 3445566666
Q ss_pred hhCCCCCEEEEecCCC
Q 015783 257 DTLGCVDIFVAAIGTG 272 (400)
Q Consensus 257 Ql~~~pD~vv~pvG~G 272 (400)
++ +.+|++|.++|.+
T Consensus 81 ~~-g~iD~lVnnAG~~ 95 (330)
T PRK06139 81 FG-GRIDVWVNNVGVG 95 (330)
T ss_pred hc-CCCCEEEECCCcC
Confidence 65 5699999999864
No 469
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.71 E-value=2.8e+02 Score=26.94 Aligned_cols=68 Identities=26% Similarity=0.389 Sum_probs=46.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHH-HHHHHcCC-E-EEEeCCCCChhhHHHHHHH
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR-ILLRAFGA-E-IILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~-~~l~~~GA-~-V~~~~~~~~~~~a~~~a~~ 223 (400)
+..+||..|.--|.++|+.-...|.+.++++.......++ +.++..|+ + |+....|-+-.+.+..+.+
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~ 83 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVE 83 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHH
Confidence 4556666666789999999999999999998877666666 66666544 4 6666655332334444433
No 470
>PRK09186 flagellin modification protein A; Provisional
Probab=30.69 E-value=2.7e+02 Score=25.37 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=27.0
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
++.+|+..+|.-|.++|......|.+++++..
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEec
Confidence 56788888899999999999999998777643
No 471
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=30.68 E-value=3.8e+02 Score=26.63 Aligned_cols=79 Identities=14% Similarity=-0.002 Sum_probs=46.7
Q ss_pred CCCCcchhhhHHHHHHHHHHcCC--CCCCCcE-EEEeCCChHHHHHHHHHHH-cCCeEEEEeCCCCcHHHHHHHHHcCCE
Q 015783 129 EPCRSVKDRIGYSMITDAEESGD--ITPGKTV-LVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAE 204 (400)
Q Consensus 129 nptGSfK~Rga~~~~~~a~~~G~--~~~g~~~-vv~assGN~g~AlA~aa~~-~Gl~~~Vvvp~~~~~~~~~~l~~~GA~ 204 (400)
.+.|....|-+..... ...+. +.+ .+. ++.++++++|..++..+-. .+---.|++|.-.-+.-...++.+|++
T Consensus 67 ~~~G~~~lR~aia~~~--~~~~~~~~~~-~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~ 143 (396)
T PRK09257 67 PIEGLAAYRQAVQELL--FGADSPALAA-GRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLE 143 (396)
T ss_pred CCCCCHHHHHHHHHHh--cCCCCccccc-CeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCc
Confidence 3458777886655433 22332 233 232 3777778888888764332 121135666654445567778889999
Q ss_pred EEEeCC
Q 015783 205 IILTDP 210 (400)
Q Consensus 205 V~~~~~ 210 (400)
++.++-
T Consensus 144 ~v~v~~ 149 (396)
T PRK09257 144 VKTYPY 149 (396)
T ss_pred EEEEec
Confidence 998863
No 472
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=30.61 E-value=2.7e+02 Score=27.86 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=38.7
Q ss_pred EEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCC-ceeeCCCCChHHHHHHHHhHHHHHHhhhC-CC
Q 015783 184 VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWEDTL-GC 261 (400)
Q Consensus 184 Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~-~~~~~~~~~~~~~~~g~~ti~~Ei~~Ql~-~~ 261 (400)
|+...+.-..--+.++.+|-++.++.+... . ..+...+..++.+- ........||.. ....|+.++.. .+
T Consensus 4 i~~G~g~~~~l~~~l~~~~~r~livtd~~~-~-~~~~v~~~L~~~g~~~~~~~~~~~p~~------~~v~~~~~~~~~~~ 75 (374)
T cd08183 4 IHFGRGVAKELPALAAELGRRVLLVTGASS-L-RAAWLIEALRAAGIEVTHVVVAGEPSV------ELVDAAVAEARNAG 75 (374)
T ss_pred EEECcCHHHHHHHHHHHcCCcEEEEECCch-H-HHHHHHHHHHHcCCeEEEecCCCCcCH------HHHHHHHHHHHhcC
Confidence 444444322333445556777766654322 1 34444444443321 122221223321 12234444442 35
Q ss_pred CCEEEEecCCChhHH
Q 015783 262 VDIFVAAIGTGGTIT 276 (400)
Q Consensus 262 pD~vv~pvG~Gg~~a 276 (400)
+| +|+.+|||+.+=
T Consensus 76 ~D-~IIaiGGGS~~D 89 (374)
T cd08183 76 CD-VVIAIGGGSVID 89 (374)
T ss_pred CC-EEEEecCchHHH
Confidence 88 577899998763
No 473
>PRK07825 short chain dehydrogenase; Provisional
Probab=30.56 E-value=3.2e+02 Score=25.33 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=26.1
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
+..+|+..+|.-|.++|......|.+++++..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r 37 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDL 37 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEEC
Confidence 46788888899999999998889998666543
No 474
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.54 E-value=2.6e+02 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=35.8
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHH-HHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+.++ +--|+++|......|.++++.-.......+++.+ +.+|.+ +.+..|-+..+.++.+.+..
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i 77 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESL 77 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHH
Confidence 344555543 4578889988888999877654332112334433 344554 22222222234454444443
No 475
>PRK13984 putative oxidoreductase; Provisional
Probab=30.46 E-value=1.6e+02 Score=31.45 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.4
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC--------------c----HHHHHHHHHcCCEEEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--------------N----LERRILLRAFGAEIIL 207 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~--------------~----~~~~~~l~~~GA~V~~ 207 (400)
..|+..++|-.|.+.|...++.|++++|+=.... + ....+.++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 4577788999999999999999999998843211 0 2345677888988764
No 476
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=30.42 E-value=2.3e+02 Score=28.41 Aligned_cols=91 Identities=12% Similarity=0.041 Sum_probs=42.4
Q ss_pred CCeEEEEeCCCCcHHHHHHHHHcCC-EEEEeCCCCCh-hhHHHHHHHHHHhCC-CceeeCCCC-ChHHHHHHHHhHHHHH
Q 015783 179 GYKLIVTMPASTNLERRILLRAFGA-EIILTDPEKGL-RGALDKAEEIVLNTP-NAYMFQQFD-NMANLKIHFDSTGPEI 254 (400)
Q Consensus 179 Gl~~~Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~~~-~~a~~~a~~~a~~~~-~~~~~~~~~-~~~~~~~g~~ti~~Ei 254 (400)
-.+..|+...+.-..--..++.+|. ++.++.+..-. .+..++..+..++.+ .....+... ||.. . ...|+
T Consensus 6 ~~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~--~----~v~~~ 79 (382)
T PRK10624 6 ILNETAYFGRGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTI--E----VVKEG 79 (382)
T ss_pred cCCCeEEECcCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCH--H----HHHHH
Confidence 3455566655543334455666774 55555432111 124555555554432 122222222 3321 1 11233
Q ss_pred HhhhC-CCCCEEEEecCCChhHH
Q 015783 255 WEDTL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 255 ~~Ql~-~~pD~vv~pvG~Gg~~a 276 (400)
.+++. .++| +|+.+|||+.+=
T Consensus 80 ~~~~~~~~~D-~IIaiGGGS~iD 101 (382)
T PRK10624 80 VEVFKASGAD-YLIAIGGGSPQD 101 (382)
T ss_pred HHHHHhcCCC-EEEEeCChHHHH
Confidence 33332 3578 677899998774
No 477
>PRK06753 hypothetical protein; Provisional
Probab=30.40 E-value=70 Score=31.49 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=26.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
.|+..++|-.|.++|...++.|++++|+=
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E 30 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFE 30 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEe
Confidence 37789999999999999999999998885
No 478
>PLN02686 cinnamoyl-CoA reductase
Probab=30.38 E-value=2.2e+02 Score=28.24 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=27.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~ 188 (400)
++.+|+.++|--|.+++......|.++++++..
T Consensus 54 k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 54 RLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 567888888999999999999999998876654
No 479
>PRK13018 cell division protein FtsZ; Provisional
Probab=30.37 E-value=2e+02 Score=29.09 Aligned_cols=30 Identities=33% Similarity=0.394 Sum_probs=18.9
Q ss_pred HHHHhhhCCCCCEEEEecC-CChhHHhHHHHH
Q 015783 252 PEIWEDTLGCVDIFVAAIG-TGGTITGTGRFL 282 (400)
Q Consensus 252 ~Ei~~Ql~~~pD~vv~pvG-~Gg~~aGi~~~~ 282 (400)
.||.+++ ...|.||+..| ||||-+|++..+
T Consensus 104 d~I~~~l-e~~D~vfI~aGLGGGTGSGaapvI 134 (378)
T PRK13018 104 DEIKEVL-KGADLVFVTAGMGGGTGTGAAPVV 134 (378)
T ss_pred HHHHHHh-cCCCEEEEEeeccCcchhhHHHHH
Confidence 4455555 46888888877 445666665444
No 480
>PRK06436 glycerate dehydrogenase; Provisional
Probab=30.33 E-value=3.9e+02 Score=26.02 Aligned_cols=102 Identities=12% Similarity=0.081 Sum_probs=63.2
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCChhhHHHHHHHHHHhCCCceeeC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (400)
.+++..-+-|+-|+++|..++.+|++++++=+.... .|.... .. ..+ ++..+. +...++
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~-~~-------~l~---ell~~a-Div~~~ 180 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSI-YM-------EPE---DIMKKS-DFVLIS 180 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCcccc-cC-------CHH---HHHhhC-CEEEEC
Confidence 357888899999999999999999998888654211 132211 10 122 233332 455443
Q ss_pred CCCChHHHHHHHHhHHHHHHhhhCCCCCEEEEecCCChhHH--hHHHHHHh
Q 015783 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT--GTGRFLKM 284 (400)
Q Consensus 236 ~~~~~~~~~~g~~ti~~Ei~~Ql~~~pD~vv~pvG~Gg~~a--Gi~~~~k~ 284 (400)
-..++.. +..+..+.++++ +++.+++-+|.|+..- .+...+++
T Consensus 181 lp~t~~T----~~li~~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 181 LPLTDET----RGMINSKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCCCchh----hcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 3223222 344566777777 4789999999999873 44555554
No 481
>PRK07041 short chain dehydrogenase; Provisional
Probab=30.20 E-value=1.8e+02 Score=26.03 Aligned_cols=64 Identities=20% Similarity=0.167 Sum_probs=36.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHH-HHHHHHcCCEEEEeCCCCChhhHHHHHHH
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLER-RILLRAFGAEIILTDPEKGLRGALDKAEE 223 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~-~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (400)
+++..+|--|.++|......|.+++++......... ...++ .|.+++.+..+.+..+.+..+.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~ 65 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG-GGAPVRTAALDITDEAAVDAFFA 65 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHH
Confidence 356777889999999988899997776543211111 11122 25666655554333344444443
No 482
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=30.19 E-value=2.7e+02 Score=27.76 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=41.4
Q ss_pred EEEEeCCCCcHHHHHHHHHcCC-EEEEeCCCCCh-hhHHHHHHHHHHhCCCcee-eCCC-CChHHHHHHHHhHHHHHHhh
Q 015783 182 LIVTMPASTNLERRILLRAFGA-EIILTDPEKGL-RGALDKAEEIVLNTPNAYM-FQQF-DNMANLKIHFDSTGPEIWED 257 (400)
Q Consensus 182 ~~Vvvp~~~~~~~~~~l~~~GA-~V~~~~~~~~~-~~a~~~a~~~a~~~~~~~~-~~~~-~~~~~~~~g~~ti~~Ei~~Q 257 (400)
..|+...+.-..--+.++.+|. ++.++.+.... .+..++..+..++.+-.+. .+.. .||.. . ...|+.++
T Consensus 3 ~~i~~G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~-----~-~v~~~~~~ 76 (370)
T cd08192 3 TRIRFGAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTE-----A-AVEAGLAA 76 (370)
T ss_pred ceEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCH-----H-HHHHHHHH
Confidence 3455555543334455666774 55555433211 1245555555544321121 2222 12221 1 22344454
Q ss_pred hC-CCCCEEEEecCCChhHH
Q 015783 258 TL-GCVDIFVAAIGTGGTIT 276 (400)
Q Consensus 258 l~-~~pD~vv~pvG~Gg~~a 276 (400)
.. .++|. |+.+|||+.+=
T Consensus 77 ~~~~~~d~-IIaiGGGSviD 95 (370)
T cd08192 77 YRAGGCDG-VIAFGGGSALD 95 (370)
T ss_pred HHhcCCCE-EEEeCCchHHH
Confidence 43 35785 67899998764
No 483
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=30.15 E-value=67 Score=32.03 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=26.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
.|+..++|-.|.++|.+.++.|++++||=
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIE 33 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEc
Confidence 47889999999999999999999999996
No 484
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=30.07 E-value=67 Score=32.30 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=25.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEeCCC
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~ 189 (400)
|+..++|..|.+.|..|+..|.+++|+=-..
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 6788999999999999999999888885443
No 485
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.07 E-value=2.8e+02 Score=26.03 Aligned_cols=69 Identities=20% Similarity=0.183 Sum_probs=36.6
Q ss_pred CcEEEEeCC--ChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHH-HHcCCEEEEeCCCCChhhHHHHHHHHH
Q 015783 156 KTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKGLRGALDKAEEIV 225 (400)
Q Consensus 156 ~~~vv~ass--GN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l-~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (400)
+..+|+.++ +--|.++|......|.++++.-.......+++.+ +.+|. ++.+..+-+..+.++.+.+..
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHHH
Confidence 345555553 5689999999999999876543221122344444 33454 333333333334455444433
No 486
>PRK06914 short chain dehydrogenase; Provisional
Probab=29.95 E-value=4.3e+02 Score=24.49 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=26.8
Q ss_pred CcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 015783 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (400)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~ 188 (400)
+..+|+.++|-.|.++|......|.+++++...
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence 456888888999999999988889987776543
No 487
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=29.85 E-value=4e+02 Score=26.43 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=41.3
Q ss_pred HcCCCCCCCcEEEEeCCC--hHHHHHHHHHHHcCCeEEEEeCCCC--cHHHHHH----HHHcCCEEEEeC
Q 015783 148 ESGDITPGKTVLVEPTTG--NTGLGIAFVAAVKGYKLIVTMPAST--NLERRIL----LRAFGAEIILTD 209 (400)
Q Consensus 148 ~~G~~~~g~~~vv~assG--N~g~AlA~aa~~~Gl~~~Vvvp~~~--~~~~~~~----l~~~GA~V~~~~ 209 (400)
+.|.+. ..+|+-.+.+ |...+++..++.+|++++++.|+.. ++..++. .+..|.++..++
T Consensus 149 ~~g~l~--g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 149 HFGPLK--GLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred HhCCCC--CCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 345443 2455556665 8999999999999999999999863 3333332 345788887765
No 488
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=29.85 E-value=4.3e+02 Score=26.18 Aligned_cols=54 Identities=30% Similarity=0.492 Sum_probs=37.9
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.+.+|.+.+|. +.|.-|.+++..|+.+|...++++.. .+.+...++.+|++-+
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~ 252 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYV 252 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEE
Confidence 455566666666 67999999999999999854444432 3347788888887543
No 489
>PRK12831 putative oxidoreductase; Provisional
Probab=29.77 E-value=1.4e+02 Score=30.90 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=27.2
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
..|+.-++|-.|.+.|...+++|++++||=
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e 170 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKMGYDVTIFE 170 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence 468899999999999999999999998883
No 490
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=29.72 E-value=1.4e+02 Score=29.83 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=34.2
Q ss_pred CCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEE
Q 015783 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (400)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~~ 207 (400)
+|.+ ++..++|.-|.+++..|+.+|.+.+++... +..+.+.++.+|++.+.
T Consensus 178 ~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 178 SGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 4444 555667999999999999999875544332 23345666788886443
No 491
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=29.62 E-value=3e+02 Score=26.95 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+...+|.+.+|. ++|.-|.+++..|+.+|.+.+++... +..+...++.+|++.+
T Consensus 176 ~~~~~g~~vlV~-G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~ 229 (357)
T PLN02514 176 GLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDY 229 (357)
T ss_pred ccCCCCCeEEEE-cccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEE
Confidence 444455555554 67999999999999999875554432 2223344566898643
No 492
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=29.58 E-value=3e+02 Score=26.41 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=38.5
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCC-cHHHHHHHHHcCCEEEE
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIIL 207 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~-~~~~~~~l~~~GA~V~~ 207 (400)
+.+.++.+.++...+|.-|.+++..|+.+|.++++...... ...+...++.+|++-+.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~ 200 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVL 200 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEE
Confidence 33455555555555699999999999999998766654321 12456666778876544
No 493
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=29.47 E-value=2.5e+02 Score=25.90 Aligned_cols=51 Identities=18% Similarity=0.059 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeC
Q 015783 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMP 187 (400)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp 187 (400)
+|..+.+..+.+.-..+....+++.-+-||-|..+|......|.+.+.+..
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 455666655543321222346789999999999999999998877776654
No 494
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=29.42 E-value=4.5e+02 Score=24.14 Aligned_cols=68 Identities=24% Similarity=0.161 Sum_probs=37.0
Q ss_pred CEEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCCchhhhhhccCeEEEeCH--HHHHHHHHHHHHH
Q 015783 263 DIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTN--DEAVNMARRLALE 340 (400)
Q Consensus 263 D~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~~l~~g~~~~~~~~l~~~~~~~~~~V~d--~e~~~a~~~la~~ 340 (400)
+..|++.++|.+..+++...+..+ .+++.+-|...+.. .....+.+-.+++.+++ +++.+.++++++.
T Consensus 50 ~~~vv~~ssGN~g~alA~~a~~~g--~~~~v~~p~~~~~~--------~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~ 119 (244)
T cd00640 50 KGVIIESTGGNTGIALAAAAARLG--LKCTIVMPEGASPE--------KVAQMRALGAEVVLVPGDFDDAIALAKELAEE 119 (244)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcC--CCEEEEECCCCCHH--------HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHh
Confidence 334555555777777777777644 67788888765311 11112222234444433 4556666666655
No 495
>CHL00194 ycf39 Ycf39; Provisional
Probab=29.41 E-value=2.6e+02 Score=26.90 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=27.0
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCC
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA 188 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~ 188 (400)
+.+|+.++|.-|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 36788888999999999988899998888744
No 496
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=29.32 E-value=4.2e+02 Score=24.43 Aligned_cols=50 Identities=32% Similarity=0.506 Sum_probs=35.0
Q ss_pred CCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCC
Q 015783 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA 203 (400)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA 203 (400)
+.+.++...++...+|..|.+++..++..|++.+++... . +...++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~---~-~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASA---A-NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecc---h-hHHHHHHcCC
Confidence 445555555555556999999999999999987666542 2 4555667775
No 497
>PRK07538 hypothetical protein; Provisional
Probab=29.16 E-value=69 Score=32.30 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=26.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCeEEEEe
Q 015783 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTM 186 (400)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~Vvv 186 (400)
|+..++|-.|.++|...++.|++++||=
T Consensus 3 V~IVGaG~aGl~~A~~L~~~G~~v~v~E 30 (413)
T PRK07538 3 VLIAGGGIGGLTLALTLHQRGIEVVVFE 30 (413)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 7889999999999999999999999884
No 498
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=29.11 E-value=4.2e+02 Score=26.97 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=68.2
Q ss_pred CcEEEEeCCC-hHHHHHHHHHHHcCCeEEEEeCC-CCc----HHHHHHHHHcCCE-EEEeCCCCChhhHHHHHHHHHHhC
Q 015783 156 KTVLVEPTTG-NTGLGIAFVAAVKGYKLIVTMPA-STN----LERRILLRAFGAE-IILTDPEKGLRGALDKAEEIVLNT 228 (400)
Q Consensus 156 ~~~vv~assG-N~g~AlA~aa~~~Gl~~~Vvvp~-~~~----~~~~~~l~~~GA~-V~~~~~~~~~~~a~~~a~~~a~~~ 228 (400)
++.++..|+| .+..++-+.-...|..++-|+-. +.+ ....+....+||. .+.++....+. -+.+....+
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~--~~yi~~~i~-- 80 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFV--EDYIFPAIK-- 80 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHH--HHHHHHHHH--
Confidence 4567778877 78888888899898887777633 332 2223444568987 55665421111 011111111
Q ss_pred CCceeeCCCCChHHH-HHHHHhHHHHHHhhhCCCCCEEE-EecCCChhHHhHHHHHHhcCCCcEEEE
Q 015783 229 PNAYMFQQFDNMANL-KIHFDSTGPEIWEDTLGCVDIFV-AAIGTGGTITGTGRFLKMMNKEIKVVG 293 (400)
Q Consensus 229 ~~~~~~~~~~~~~~~-~~g~~ti~~Ei~~Ql~~~pD~vv-~pvG~Gg~~aGi~~~~k~~~~~~rvi~ 293 (400)
.+..|-..|-+.... +-=-.....|+.++.+ .++|- .|+|=|-=.-=.-.+++.++|+.+||+
T Consensus 81 ana~Yeg~YpL~TalaRPLIak~lVe~A~k~g--a~avaHGcTGKGNDQvRFe~~~~al~p~lkiiA 145 (403)
T COG0137 81 ANALYEGVYPLGTALARPLIAKKLVEAAKKEG--ADAVAHGCTGKGNDQVRFELAILALNPDLKIIA 145 (403)
T ss_pred hhceeeccccccchhhHHHHHHHHHHHHHHcC--CCEEEecCCCCCCceeeeeeehhhhCCCcEEEe
Confidence 244554444322111 0011334467878764 34333 333433333323344556677888776
No 499
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=29.06 E-value=2.4e+02 Score=25.01 Aligned_cols=47 Identities=26% Similarity=0.222 Sum_probs=33.8
Q ss_pred cEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEE
Q 015783 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (400)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~Vvvp~~~~~~~~~~l~~~GA~V~ 206 (400)
+.++..+=|.-|+++|..++.+|.+++|+- ..|.+..+....|=+|.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e---~DPi~alqA~~dGf~v~ 70 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTE---IDPIRALQAAMDGFEVM 70 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE----SSHHHHHHHHHTT-EEE
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEE---CChHHHHHhhhcCcEec
Confidence 468889999999999999999998877763 35677766667787765
No 500
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=29.00 E-value=99 Score=28.31 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=29.8
Q ss_pred EEEEecCCChhHHhHHHHHHhcCCCcEEEEEeCCCCc
Q 015783 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS 300 (400)
Q Consensus 264 ~vv~pvG~Gg~~aGi~~~~k~~~~~~rvi~Vep~~~~ 300 (400)
.+|...|+|+|+..|..+++.-..+.+|.+|-.....
T Consensus 3 i~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~ 39 (200)
T COG0299 3 IAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKAD 39 (200)
T ss_pred EEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCC
Confidence 5788999999999999999865557788887766543
Done!