Query 015785
Match_columns 400
No_of_seqs 231 out of 1497
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1E-109 3E-114 833.7 33.6 376 23-398 30-420 (524)
2 PLN02998 beta-glucosidase 100.0 2E-106 4E-111 831.4 36.3 392 7-398 8-405 (497)
3 PLN02849 beta-glucosidase 100.0 2E-105 4E-110 825.5 37.1 389 3-397 3-397 (503)
4 PLN02814 beta-glucosidase 100.0 3E-105 7E-110 823.6 35.3 371 24-397 22-399 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 3E-104 7E-109 790.0 34.2 356 28-398 2-368 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 3E-100 6E-105 782.9 35.8 357 29-397 3-379 (467)
7 PRK13511 6-phospho-beta-galact 100.0 4E-100 9E-105 783.1 35.0 358 28-397 3-380 (469)
8 PRK09593 arb 6-phospho-beta-gl 100.0 4E-100 9E-105 783.1 34.7 355 27-397 3-380 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 4E-101 9E-106 790.6 23.5 360 27-398 2-368 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 3.2E-99 7E-104 776.2 35.4 353 29-397 3-379 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 2.3E-98 5E-103 769.4 37.5 355 26-397 2-380 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1.3E-97 3E-102 762.6 35.1 353 29-397 3-377 (474)
13 TIGR03356 BGL beta-galactosida 100.0 6.7E-97 1E-101 751.9 34.3 346 30-397 1-349 (427)
14 PF00150 Cellulase: Cellulase 99.4 2.7E-12 5.9E-17 123.0 11.5 145 81-251 22-170 (281)
15 PF02449 Glyco_hydro_42: Beta- 99.4 1.1E-12 2.5E-17 132.1 8.0 109 80-192 10-141 (374)
16 smart00633 Glyco_10 Glycosyl h 99.3 1.7E-10 3.7E-15 110.3 18.6 82 102-191 2-85 (254)
17 PF07745 Glyco_hydro_53: Glyco 99.1 1.2E-08 2.5E-13 100.7 19.0 207 83-398 27-242 (332)
18 COG1874 LacA Beta-galactosidas 98.6 8.6E-08 1.9E-12 102.0 7.6 113 81-197 31-170 (673)
19 COG3867 Arabinogalactan endo-1 98.4 7.7E-05 1.7E-09 71.4 21.5 240 28-396 33-286 (403)
20 COG2730 BglC Endoglucanase [Ca 98.3 1.8E-06 4E-11 88.1 9.4 109 83-191 76-193 (407)
21 PF01229 Glyco_hydro_39: Glyco 98.3 2.8E-06 6.1E-11 88.7 10.0 140 82-252 41-202 (486)
22 PRK10150 beta-D-glucuronidase; 98.1 9.5E-05 2E-09 79.4 17.0 93 81-190 314-419 (604)
23 PF00331 Glyco_hydro_10: Glyco 97.9 4E-05 8.7E-10 75.9 9.0 122 30-191 6-136 (320)
24 COG3693 XynA Beta-1,4-xylanase 97.8 0.0014 2.9E-08 63.9 17.4 96 90-191 56-153 (345)
25 PF01301 Glyco_hydro_35: Glyco 97.7 9.9E-05 2.2E-09 73.0 8.1 109 81-190 25-151 (319)
26 PF01373 Glyco_hydro_14: Glyco 97.3 0.00043 9.3E-09 69.6 6.6 105 79-189 15-150 (402)
27 PLN02161 beta-amylase 97.3 0.00082 1.8E-08 69.0 7.8 111 76-191 113-262 (531)
28 PLN02803 beta-amylase 97.2 0.0011 2.4E-08 68.4 8.6 107 80-191 107-252 (548)
29 PLN00197 beta-amylase; Provisi 97.2 0.0013 2.8E-08 68.1 8.7 107 80-191 127-272 (573)
30 PLN02801 beta-amylase 97.0 0.0032 6.9E-08 64.8 9.6 100 78-180 35-173 (517)
31 PLN03059 beta-galactosidase; P 97.0 0.0017 3.7E-08 70.9 7.6 108 80-189 59-187 (840)
32 PF13204 DUF4038: Protein of u 96.9 0.0069 1.5E-07 59.1 10.8 102 83-189 33-156 (289)
33 PLN02905 beta-amylase 96.9 0.0039 8.5E-08 65.4 9.3 102 76-180 282-422 (702)
34 PLN02705 beta-amylase 96.9 0.0052 1.1E-07 64.3 9.4 100 78-180 266-404 (681)
35 PF14587 Glyco_hydr_30_2: O-Gl 96.8 0.0095 2.1E-07 59.8 10.2 80 111-191 95-185 (384)
36 PF11790 Glyco_hydro_cc: Glyco 96.4 0.042 9.1E-07 52.1 11.6 26 370-396 151-176 (239)
37 PF02836 Glyco_hydro_2_C: Glyc 96.1 0.033 7.2E-07 54.3 9.3 93 78-189 34-132 (298)
38 PF03198 Glyco_hydro_72: Gluca 95.9 0.26 5.7E-06 48.2 14.5 48 81-142 54-101 (314)
39 PF14488 DUF4434: Domain of un 95.6 0.069 1.5E-06 47.8 8.7 101 81-190 21-131 (166)
40 KOG0496 Beta-galactosidase [Ca 95.6 0.048 1E-06 57.8 8.5 108 81-190 50-176 (649)
41 COG3664 XynB Beta-xylosidase [ 92.3 0.24 5.2E-06 50.0 5.5 101 89-194 14-119 (428)
42 PF07488 Glyco_hydro_67M: Glyc 92.3 0.97 2.1E-05 44.1 9.4 87 79-178 56-150 (328)
43 PRK09525 lacZ beta-D-galactosi 91.0 0.71 1.5E-05 52.8 8.2 91 78-190 369-464 (1027)
44 COG3934 Endo-beta-mannanase [C 90.3 0.13 2.9E-06 52.7 1.5 109 82-191 28-150 (587)
45 PRK10340 ebgA cryptic beta-D-g 89.8 1 2.2E-05 51.6 8.1 90 79-190 354-451 (1021)
46 PF02638 DUF187: Glycosyl hydr 87.8 13 0.00028 36.7 13.4 98 80-177 19-154 (311)
47 COG3250 LacZ Beta-galactosidas 87.3 2.4 5.2E-05 47.2 8.7 90 76-190 317-408 (808)
48 PF12876 Cellulase-like: Sugar 86.6 1.1 2.4E-05 35.4 4.3 60 172-252 1-63 (88)
49 smart00642 Aamy Alpha-amylase 84.5 2.5 5.4E-05 37.7 6.0 63 79-141 18-91 (166)
50 PF14871 GHL6: Hypothetical gl 84.0 6.3 0.00014 33.9 8.0 92 84-176 4-123 (132)
51 PRK09936 hypothetical protein; 80.4 18 0.00038 35.3 10.3 62 82-151 40-101 (296)
52 PLN02361 alpha-amylase 76.8 4.3 9.4E-05 41.5 5.4 64 77-140 26-96 (401)
53 PLN00196 alpha-amylase; Provis 74.3 5 0.00011 41.5 5.1 62 79-140 43-112 (428)
54 PF10566 Glyco_hydro_97: Glyco 74.0 14 0.00029 35.9 7.6 119 56-175 9-149 (273)
55 PF12891 Glyco_hydro_44: Glyco 73.6 6.4 0.00014 37.3 5.1 114 119-255 23-182 (239)
56 TIGR00612 ispG_gcpE 1-hydroxy- 71.5 30 0.00064 34.5 9.4 87 72-172 74-160 (346)
57 cd06592 GH31_glucosidase_KIAA1 71.3 20 0.00043 35.1 8.3 105 82-190 32-167 (303)
58 PF05089 NAGLU: Alpha-N-acetyl 71.1 16 0.00034 36.4 7.4 70 119-190 94-185 (333)
59 PF00128 Alpha-amylase: Alpha 70.2 7.8 0.00017 36.8 5.2 58 83-141 7-73 (316)
60 PRK14041 oxaloacetate decarbox 70.2 16 0.00036 38.1 7.8 56 78-146 88-148 (467)
61 cd07945 DRE_TIM_CMS Leptospira 70.0 14 0.00031 35.8 6.9 83 81-174 75-158 (280)
62 TIGR02402 trehalose_TreZ malto 68.9 28 0.0006 37.1 9.4 92 79-177 110-237 (542)
63 PRK05402 glycogen branching en 68.8 26 0.00057 38.7 9.4 94 82-183 267-401 (726)
64 PRK12313 glycogen branching en 68.5 24 0.00053 38.3 9.0 93 79-177 169-302 (633)
65 cd06598 GH31_transferase_CtsZ 67.4 89 0.0019 30.7 12.1 107 83-192 27-168 (317)
66 cd07939 DRE_TIM_NifV Streptomy 66.4 20 0.00044 34.1 7.1 79 82-174 71-150 (259)
67 PRK14040 oxaloacetate decarbox 66.1 21 0.00046 38.5 7.8 97 78-191 90-211 (593)
68 cd02932 OYE_YqiM_FMN Old yello 66.0 1.4E+02 0.0031 29.5 15.0 40 105-144 62-101 (336)
69 COG1523 PulA Type II secretory 65.6 12 0.00026 41.0 5.8 55 86-140 206-285 (697)
70 PRK03705 glycogen debranching 64.1 14 0.00029 40.5 6.0 55 86-141 185-263 (658)
71 cd03174 DRE_TIM_metallolyase D 63.3 22 0.00049 33.4 6.8 80 83-174 77-157 (265)
72 cd07944 DRE_TIM_HOA_like 4-hyd 63.1 29 0.00062 33.4 7.5 65 83-174 85-149 (266)
73 cd06543 GH18_PF-ChiA-like PF-C 63.1 43 0.00093 32.8 8.7 128 87-257 19-150 (294)
74 PLN02784 alpha-amylase 62.9 14 0.0003 41.4 5.7 64 77-140 518-588 (894)
75 PRK05799 coproporphyrinogen II 62.6 16 0.00034 36.8 5.8 94 82-192 98-195 (374)
76 PRK10933 trehalose-6-phosphate 62.6 16 0.00034 39.1 6.0 61 79-141 32-102 (551)
77 cd06591 GH31_xylosidase_XylS X 62.4 1.6E+02 0.0035 28.9 13.4 78 114-193 60-164 (319)
78 cd07937 DRE_TIM_PC_TC_5S Pyruv 62.2 42 0.00092 32.3 8.5 69 82-175 93-161 (275)
79 cd06593 GH31_xylosidase_YicI Y 61.7 44 0.00096 32.6 8.7 106 82-190 26-161 (308)
80 PRK09441 cytoplasmic alpha-amy 61.4 15 0.00033 38.4 5.6 64 78-141 20-102 (479)
81 TIGR02403 trehalose_treC alpha 61.2 17 0.00038 38.6 6.1 63 79-141 26-96 (543)
82 TIGR02090 LEU1_arch isopropylm 60.7 25 0.00055 35.4 6.9 60 82-141 73-133 (363)
83 PRK05692 hydroxymethylglutaryl 60.3 33 0.00071 33.4 7.4 86 81-175 80-167 (287)
84 TIGR00433 bioB biotin syntheta 59.6 21 0.00046 34.4 6.0 55 82-139 122-177 (296)
85 PLN02746 hydroxymethylglutaryl 58.9 30 0.00066 34.7 7.0 84 82-174 123-208 (347)
86 cd07948 DRE_TIM_HCS Saccharomy 58.5 15 0.00032 35.4 4.5 60 82-141 73-133 (262)
87 COG1501 Alpha-glucosidases, fa 58.4 60 0.0013 36.2 9.8 98 92-194 294-421 (772)
88 PRK09505 malS alpha-amylase; R 58.1 22 0.00047 39.1 6.2 60 82-141 232-313 (683)
89 PRK14705 glycogen branching en 57.1 55 0.0012 38.4 9.5 91 86-177 772-897 (1224)
90 PRK12331 oxaloacetate decarbox 57.1 43 0.00094 34.8 8.0 51 83-146 99-149 (448)
91 TIGR01515 branching_enzym alph 56.4 63 0.0014 35.0 9.4 96 82-177 158-288 (613)
92 PRK14510 putative bifunctional 56.4 17 0.00036 42.7 5.3 57 84-140 191-267 (1221)
93 PRK12399 tagatose 1,6-diphosph 56.3 52 0.0011 32.6 7.9 89 86-183 111-202 (324)
94 KOG2233 Alpha-N-acetylglucosam 56.2 75 0.0016 33.3 9.2 112 79-190 77-249 (666)
95 PRK12858 tagatose 1,6-diphosph 56.1 46 0.00099 33.4 7.7 52 86-140 112-163 (340)
96 cd06601 GH31_lyase_GLase GLase 55.3 70 0.0015 31.9 8.9 80 114-195 58-140 (332)
97 PRK04161 tagatose 1,6-diphosph 55.3 55 0.0012 32.5 7.9 91 84-183 111-204 (329)
98 PRK10785 maltodextrin glucosid 55.2 26 0.00056 37.8 6.2 54 82-141 181-247 (598)
99 TIGR03581 EF_0839 conserved hy 55.0 32 0.00068 32.2 5.8 78 76-165 131-230 (236)
100 cd07938 DRE_TIM_HMGL 3-hydroxy 54.7 48 0.001 32.0 7.4 84 82-174 75-160 (274)
101 PF03659 Glyco_hydro_71: Glyco 53.9 55 0.0012 33.3 8.0 50 81-140 18-67 (386)
102 PRK08255 salicylyl-CoA 5-hydro 53.4 3.6E+02 0.0078 30.0 15.4 150 104-273 459-646 (765)
103 PRK12581 oxaloacetate decarbox 53.3 49 0.0011 34.6 7.6 92 35-146 54-158 (468)
104 TIGR02456 treS_nterm trehalose 53.1 26 0.00057 37.2 5.8 60 82-141 30-97 (539)
105 TIGR02660 nifV_homocitr homoci 52.2 40 0.00087 33.9 6.7 59 82-140 74-133 (365)
106 cd06599 GH31_glycosidase_Aec37 51.9 2.4E+02 0.0053 27.6 12.5 106 84-191 33-171 (317)
107 COG0821 gcpE 1-hydroxy-2-methy 51.7 1.1E+02 0.0024 30.5 9.3 87 72-172 76-162 (361)
108 cd02803 OYE_like_FMN_family Ol 51.0 1.5E+02 0.0032 29.0 10.4 137 105-259 62-221 (327)
109 TIGR03234 OH-pyruv-isom hydrox 50.9 34 0.00074 32.1 5.7 65 79-146 83-150 (254)
110 cd04733 OYE_like_2_FMN Old yel 50.6 2.6E+02 0.0057 27.6 14.7 40 104-143 63-105 (338)
111 cd06603 GH31_GANC_GANAB_alpha 50.4 73 0.0016 31.6 8.2 79 115-193 59-167 (339)
112 TIGR01108 oadA oxaloacetate de 49.2 66 0.0014 34.7 8.0 92 83-191 94-205 (582)
113 cd07943 DRE_TIM_HOA 4-hydroxy- 49.0 60 0.0013 30.9 7.1 46 83-141 88-133 (263)
114 TIGR02629 L_rham_iso_rhiz L-rh 48.8 69 0.0015 32.9 7.6 88 83-184 73-171 (412)
115 cd06602 GH31_MGAM_SI_GAA This 48.4 81 0.0017 31.4 8.1 105 84-191 28-168 (339)
116 TIGR01232 lacD tagatose 1,6-di 46.6 75 0.0016 31.5 7.3 59 85-146 111-169 (325)
117 PRK09058 coproporphyrinogen II 46.4 49 0.0011 34.3 6.4 95 82-192 162-259 (449)
118 cd06600 GH31_MGAM-like This fa 45.9 1.3E+02 0.0028 29.6 9.0 103 86-191 30-163 (317)
119 PRK11858 aksA trans-homoaconit 45.8 55 0.0012 33.2 6.5 58 83-140 78-136 (378)
120 cd07940 DRE_TIM_IPMS 2-isoprop 44.2 59 0.0013 31.1 6.2 77 83-174 72-154 (268)
121 COG3589 Uncharacterized conser 43.8 44 0.00096 33.3 5.2 71 84-168 20-90 (360)
122 COG2100 Predicted Fe-S oxidore 43.6 79 0.0017 31.5 6.8 82 76-173 197-284 (414)
123 cd07941 DRE_TIM_LeuA3 Desulfob 43.6 75 0.0016 30.5 6.9 81 83-174 81-162 (273)
124 TIGR00539 hemN_rel putative ox 43.5 58 0.0013 32.6 6.3 93 82-190 99-194 (360)
125 PRK10605 N-ethylmaleimide redu 43.3 3.6E+02 0.0078 27.1 16.6 193 111-324 70-321 (362)
126 PLN02447 1,4-alpha-glucan-bran 43.1 59 0.0013 36.2 6.6 52 85-142 256-322 (758)
127 TIGR01210 conserved hypothetic 43.1 1E+02 0.0022 30.4 7.8 108 83-204 117-229 (313)
128 KOG1065 Maltase glucoamylase a 42.5 1.1E+02 0.0024 34.1 8.4 104 84-193 315-453 (805)
129 PRK05474 xylose isomerase; Pro 42.3 4.1E+02 0.009 27.5 12.7 144 85-262 84-238 (437)
130 cd02933 OYE_like_FMN Old yello 42.3 3.6E+02 0.0078 26.8 15.8 39 106-144 63-101 (338)
131 cd06545 GH18_3CO4_chitinase Th 42.0 61 0.0013 30.6 5.9 73 100-177 27-99 (253)
132 PRK08195 4-hyroxy-2-oxovalerat 41.6 1E+02 0.0022 30.7 7.6 67 83-177 91-157 (337)
133 TIGR03217 4OH_2_O_val_ald 4-hy 41.5 1.6E+02 0.0035 29.3 9.0 54 82-148 89-144 (333)
134 PRK13523 NADPH dehydrogenase N 41.4 3.7E+02 0.0081 26.7 11.8 139 111-268 72-229 (337)
135 TIGR02401 trehalose_TreY malto 40.8 52 0.0011 36.9 5.8 61 80-140 16-85 (825)
136 TIGR02100 glgX_debranch glycog 40.7 60 0.0013 35.8 6.3 56 86-141 190-266 (688)
137 PRK12568 glycogen branching en 40.5 52 0.0011 36.4 5.7 98 79-177 268-401 (730)
138 COG0366 AmyA Glycosidases [Car 39.8 46 0.001 34.3 5.1 59 84-142 33-101 (505)
139 PLN02923 xylose isomerase 39.6 2.6E+02 0.0056 29.0 10.0 102 87-202 78-197 (478)
140 PF01120 Alpha_L_fucos: Alpha- 38.7 97 0.0021 30.9 7.0 59 86-144 97-162 (346)
141 PRK14706 glycogen branching en 38.5 1.6E+02 0.0036 32.1 9.1 90 87-177 175-299 (639)
142 PLN02389 biotin synthase 38.4 83 0.0018 32.0 6.5 58 80-140 175-233 (379)
143 PRK08599 coproporphyrinogen II 37.9 1.2E+02 0.0027 30.4 7.7 93 82-191 99-195 (377)
144 PRK14507 putative bifunctional 36.6 1.1E+02 0.0023 37.4 7.7 66 79-144 757-833 (1693)
145 TIGR02104 pulA_typeI pullulana 36.5 68 0.0015 34.7 5.9 23 119-141 228-250 (605)
146 PRK12677 xylose isomerase; Pro 35.9 4.8E+02 0.01 26.5 14.8 91 81-178 32-128 (384)
147 PRK00366 ispG 4-hydroxy-3-meth 35.9 1.8E+02 0.0039 29.4 8.1 88 72-172 82-169 (360)
148 cd07947 DRE_TIM_Re_CS Clostrid 35.6 87 0.0019 30.4 5.9 60 81-140 75-135 (279)
149 PF03511 Fanconi_A: Fanconi an 35.4 29 0.00062 25.8 1.9 39 104-144 19-57 (64)
150 TIGR02630 xylose_isom_A xylose 35.3 5.3E+02 0.011 26.7 12.8 143 86-262 84-237 (434)
151 PLN02960 alpha-amylase 35.0 93 0.002 35.2 6.6 94 78-177 414-549 (897)
152 PRK07379 coproporphyrinogen II 35.0 1.4E+02 0.0029 30.5 7.5 103 82-201 114-220 (400)
153 cd02874 GH18_CFLE_spore_hydrol 34.5 1.1E+02 0.0024 29.8 6.5 84 86-177 16-103 (313)
154 cd06542 GH18_EndoS-like Endo-b 34.5 1.1E+02 0.0023 28.8 6.3 55 119-177 50-104 (255)
155 smart00729 Elp3 Elongator prot 34.4 2.1E+02 0.0046 24.9 8.0 58 80-140 97-157 (216)
156 COG3623 SgaU Putative L-xylulo 34.0 76 0.0016 30.2 4.9 21 81-101 19-39 (287)
157 PRK14511 maltooligosyl trehalo 33.7 79 0.0017 35.8 5.8 57 79-141 19-90 (879)
158 PRK09997 hydroxypyruvate isome 33.0 94 0.002 29.2 5.6 62 82-146 87-151 (258)
159 PRK13398 3-deoxy-7-phosphohept 32.8 1.2E+02 0.0027 29.1 6.4 72 75-149 36-107 (266)
160 PRK08446 coproporphyrinogen II 32.7 1.8E+02 0.0038 29.0 7.8 92 83-190 98-192 (350)
161 PRK09282 pyruvate carboxylase 32.0 1.7E+02 0.0037 31.7 7.9 93 82-191 98-210 (592)
162 PRK09856 fructoselysine 3-epim 31.7 53 0.0011 31.1 3.7 61 78-139 88-148 (275)
163 cd06604 GH31_glucosidase_II_Ma 31.4 2.4E+02 0.0052 27.9 8.5 75 115-192 59-163 (339)
164 TIGR02635 RhaI_grampos L-rhamn 31.4 2.2E+02 0.0049 28.9 8.2 86 83-183 43-136 (378)
165 cd02929 TMADH_HD_FMN Trimethyl 31.1 5.6E+02 0.012 25.8 15.0 132 111-260 74-231 (370)
166 cd06525 GH25_Lyc-like Lyc mura 31.0 3.4E+02 0.0073 24.1 8.7 21 160-180 100-120 (184)
167 PF04914 DltD_C: DltD C-termin 30.9 1.4E+02 0.003 25.6 5.7 56 119-178 35-90 (130)
168 cd06589 GH31 The enzymes of gl 30.9 4.7E+02 0.01 24.8 11.3 89 83-192 27-120 (265)
169 PF01055 Glyco_hydro_31: Glyco 30.8 1.8E+02 0.0038 29.8 7.6 107 82-192 45-184 (441)
170 PRK08208 coproporphyrinogen II 30.4 1.5E+02 0.0033 30.5 7.0 60 82-146 140-203 (430)
171 TIGR03471 HpnJ hopanoid biosyn 30.2 94 0.002 32.3 5.5 59 83-146 287-348 (472)
172 PRK13347 coproporphyrinogen II 29.8 53 0.0012 34.1 3.6 76 82-174 151-230 (453)
173 PRK06294 coproporphyrinogen II 29.7 1.5E+02 0.0032 29.9 6.6 94 82-191 102-198 (370)
174 PF03932 CutC: CutC family; I 29.5 87 0.0019 28.9 4.5 50 79-142 71-120 (201)
175 TIGR00542 hxl6Piso_put hexulos 28.6 76 0.0017 30.2 4.2 60 79-140 93-153 (279)
176 PRK05628 coproporphyrinogen II 28.6 2.7E+02 0.0058 27.9 8.4 94 82-191 107-203 (375)
177 PRK12330 oxaloacetate decarbox 28.5 2.1E+02 0.0046 30.3 7.7 93 83-191 100-213 (499)
178 PF00682 HMGL-like: HMGL-like 28.3 1.5E+02 0.0032 27.5 6.0 79 83-175 66-149 (237)
179 PF02055 Glyco_hydro_30: O-Gly 28.1 77 0.0017 33.5 4.4 101 90-192 110-236 (496)
180 PF04646 DUF604: Protein of un 27.9 26 0.00057 33.4 0.8 72 129-203 77-148 (255)
181 KOG0470 1,4-alpha-glucan branc 27.6 79 0.0017 34.8 4.4 64 79-142 253-333 (757)
182 COG3534 AbfA Alpha-L-arabinofu 27.4 4.2E+02 0.0092 27.7 9.3 94 82-190 50-175 (501)
183 PRK07094 biotin synthase; Prov 26.7 1.1E+02 0.0024 29.9 5.0 57 81-140 127-185 (323)
184 PRK11572 copper homeostasis pr 26.4 1.2E+02 0.0027 28.9 5.1 42 79-129 72-113 (248)
185 PRK06256 biotin synthase; Vali 26.3 93 0.002 30.6 4.5 57 81-140 150-207 (336)
186 PLN02411 12-oxophytodienoate r 25.8 5.1E+02 0.011 26.4 9.8 126 111-255 78-240 (391)
187 PRK10426 alpha-glucosidase; Pr 25.8 5E+02 0.011 28.3 10.3 104 84-189 225-364 (635)
188 cd00019 AP2Ec AP endonuclease 25.5 3.1E+02 0.0068 25.9 7.9 54 80-138 10-64 (279)
189 PF04055 Radical_SAM: Radical 24.9 88 0.0019 26.1 3.6 52 83-136 90-143 (166)
190 cd06595 GH31_xylosidase_XylS-l 24.8 2.1E+02 0.0045 27.7 6.5 105 85-192 30-163 (292)
191 cd00717 URO-D Uroporphyrinogen 24.8 6.6E+02 0.014 24.5 11.4 46 86-133 183-228 (335)
192 PF13200 DUF4015: Putative gly 24.8 2.1E+02 0.0046 28.4 6.5 95 80-175 13-136 (316)
193 TIGR01212 radical SAM protein, 24.3 1.6E+02 0.0034 28.8 5.6 72 119-203 162-233 (302)
194 cd03130 GATase1_CobB Type 1 gl 24.3 2.9E+02 0.0063 25.0 7.0 67 73-142 6-83 (198)
195 PRK09249 coproporphyrinogen II 24.1 2.4E+02 0.0051 29.2 7.2 77 82-174 150-229 (453)
196 TIGR00538 hemN oxygen-independ 24.1 71 0.0015 33.1 3.3 76 82-174 150-229 (455)
197 PRK05660 HemN family oxidoredu 23.9 3.4E+02 0.0073 27.4 8.1 94 82-191 106-202 (378)
198 PF14417 MEDS: MEDS: MEthanoge 23.8 2E+02 0.0042 25.9 5.8 58 79-145 104-163 (191)
199 PF13812 PPR_3: Pentatricopept 23.7 79 0.0017 19.0 2.3 15 122-136 20-34 (34)
200 PLN02925 4-hydroxy-3-methylbut 23.6 2.3E+02 0.0049 31.3 6.9 50 122-172 212-261 (733)
201 PF06777 DUF1227: Protein of u 23.5 1.5E+02 0.0033 26.0 4.6 68 120-188 16-85 (146)
202 PF01261 AP_endonuc_2: Xylose 23.3 53 0.0011 29.1 1.9 61 79-139 70-131 (213)
203 TIGR00674 dapA dihydrodipicoli 23.3 3.6E+02 0.0079 25.8 7.9 59 111-183 13-71 (285)
204 smart00052 EAL Putative diguan 23.2 1.5E+02 0.0033 26.8 5.1 62 73-139 148-209 (241)
205 PF04028 DUF374: Domain of unk 22.9 2.1E+02 0.0045 21.9 4.8 40 87-140 27-66 (74)
206 PRK13210 putative L-xylulose 5 22.8 2.3E+02 0.0049 26.7 6.3 57 107-177 226-282 (284)
207 PF10107 Endonuc_Holl: Endonuc 22.8 42 0.0009 29.6 1.0 42 285-328 72-113 (156)
208 TIGR01211 ELP3 histone acetylt 22.4 2.3E+02 0.005 30.1 6.7 106 82-204 205-316 (522)
209 PTZ00445 p36-lilke protein; Pr 22.3 1.5E+02 0.0033 27.7 4.7 50 120-173 29-88 (219)
210 COG3916 LasI N-acyl-L-homoseri 21.8 1.3E+02 0.0027 28.1 4.0 77 79-157 76-159 (209)
211 PRK13210 putative L-xylulose 5 21.8 1.1E+02 0.0024 28.9 4.0 59 80-140 94-153 (284)
212 PRK09389 (R)-citramalate synth 21.6 2.7E+02 0.0058 29.4 7.0 106 82-191 75-199 (488)
213 cd01948 EAL EAL domain. This d 21.6 1.5E+02 0.0032 26.9 4.6 63 72-139 146-208 (240)
214 cd01335 Radical_SAM Radical SA 21.4 1.2E+02 0.0027 25.9 3.9 58 82-140 87-145 (204)
215 COG3142 CutC Uncharacterized p 21.3 1.4E+02 0.0031 28.2 4.3 42 80-130 73-114 (241)
216 COG1902 NemA NADH:flavin oxido 21.2 8.6E+02 0.019 24.6 12.2 135 104-258 67-228 (363)
217 cd06565 GH20_GcnA-like Glycosy 21.1 2.9E+02 0.0064 26.9 6.8 60 82-148 19-85 (301)
218 KOG4530 Predicted flavoprotein 20.9 97 0.0021 27.7 2.9 27 368-394 101-127 (199)
219 PF02065 Melibiase: Melibiase; 20.9 9.1E+02 0.02 24.7 14.8 144 82-251 60-232 (394)
220 PRK01060 endonuclease IV; Prov 20.9 4.7E+02 0.01 24.6 8.1 51 82-137 14-64 (281)
221 TIGR02102 pullulan_Gpos pullul 20.9 1.9E+02 0.0042 33.7 6.1 23 119-141 554-576 (1111)
222 COG5520 O-Glycosyl hydrolase [ 20.8 2.8E+02 0.006 28.1 6.4 94 91-192 77-181 (433)
223 TIGR01856 hisJ_fam histidinol 20.7 2.5E+02 0.0055 26.4 6.1 59 121-181 16-77 (253)
224 PLN02229 alpha-galactosidase 20.7 2.2E+02 0.0047 29.6 5.9 122 2-135 6-143 (427)
225 PRK00125 pyrF orotidine 5'-pho 20.7 1.1E+02 0.0023 29.9 3.5 32 116-147 69-100 (278)
226 PLN03153 hypothetical protein; 20.7 1.1E+02 0.0023 32.6 3.6 69 128-205 326-401 (537)
227 PRK09967 putative outer membra 20.6 4.2E+02 0.0091 23.3 7.1 64 81-144 26-93 (160)
228 TIGR01589 A_thal_3526 uncharac 20.6 1.2E+02 0.0026 22.2 2.8 36 123-169 19-55 (57)
229 cd01990 Alpha_ANH_like_I This 20.5 3.3E+02 0.0071 24.4 6.6 57 88-144 47-106 (202)
230 COG3661 AguA Alpha-glucuronida 20.5 3.9E+02 0.0084 27.9 7.4 91 79-176 182-273 (684)
231 TIGR02631 xylA_Arthro xylose i 20.3 9.1E+02 0.02 24.5 16.0 94 79-179 31-130 (382)
232 PRK05692 hydroxymethylglutaryl 20.3 6.9E+02 0.015 24.2 9.1 80 80-178 120-199 (287)
233 PF15240 Pro-rich: Proline-ric 20.2 86 0.0019 28.4 2.5 13 5-17 3-15 (179)
234 PTZ00445 p36-lilke protein; Pr 20.1 1.8E+02 0.004 27.2 4.7 56 86-141 35-99 (219)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-109 Score=833.73 Aligned_cols=376 Identities=55% Similarity=0.992 Sum_probs=337.6
Q ss_pred cccccCCCCCCCeehhehhhhhhcCCcCCCCCCCccceeeccc-C-Cc--CCCCCcCCCcccCcHHHHHHHHHcCCCcee
Q 015785 23 VEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-G-NV--HGTGDIACDGYHKYKEDVKLMADTGLDAYR 98 (400)
Q Consensus 23 ~~~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~-~-~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R 98 (400)
+.+.+..||++|+||+||||||+|||+++||||+|+||.|++. + ++ ..++|+|||+||||+|||+|||+||+++||
T Consensus 30 ~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afR 109 (524)
T KOG0626|consen 30 TKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFR 109 (524)
T ss_pred CcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEE
Confidence 3456788999999999999999999999999999999999987 3 33 567899999999999999999999999999
Q ss_pred ecccCCccccCCC--CCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHh
Q 015785 99 FSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQF 176 (400)
Q Consensus 99 ~si~W~ri~p~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~ 176 (400)
|||+||||+|.|+ +.+|++|+++|+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++|
T Consensus 110 FSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~f 189 (524)
T KOG0626|consen 110 FSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEF 189 (524)
T ss_pred EEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHh
Confidence 9999999999997 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEecCCccccccCcccCCCCCCCCCCc-cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEEE
Q 015785 177 GDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI-NHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQ---RGYIGVN 252 (400)
Q Consensus 177 ~d~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~---~~~IG~~ 252 (400)
|||||+|+|+|||++++..||..|..|||+|+.. .+|..+++.++.|.+.|||++|||+||++||+.++ +|+||++
T Consensus 190 GDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~ 269 (524)
T KOG0626|consen 190 GDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIA 269 (524)
T ss_pred cccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEE
Confidence 9999999999999999999999999999999864 67999999999999999999999999999998754 8999999
Q ss_pred eeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhcccCCCCCHHHHhhhcCCCcEEEeeeeeeEEEe
Q 015785 253 IFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVK 332 (400)
Q Consensus 253 ~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFiGiNYYt~~~v~ 332 (400)
+...|+.|.+++++|++||+|+.+|..+|+++|++.|+||+.|++.+++|||.||++|.+.+||+.||+|||||++.+++
T Consensus 270 ~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~ 349 (524)
T KOG0626|consen 270 LSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVK 349 (524)
T ss_pred EeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhh
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999998
Q ss_pred cCCCCCccccCCCccCCcccc----ccCCCCC-CCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCCC
Q 015785 333 DNPSSLNKKLRDWNADSATEI----FFNLDTA-SSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLSL 398 (400)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~~ 398 (400)
...............|..... ....+.. ...+..++|+|||++|++++++|+|+||||||||+++.
T Consensus 350 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~ 420 (524)
T KOG0626|consen 350 HLKPPPDPSQPGWSTDSGVDWTLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDL 420 (524)
T ss_pred ccCCCCCCCCcccccccceeeeecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcc
Confidence 743321111111222221111 0011122 23467899999999999999999999999999999875
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.9e-106 Score=831.43 Aligned_cols=392 Identities=64% Similarity=1.133 Sum_probs=339.0
Q ss_pred HHHHHHHHHHhhhhcccccccCCCCCCCeehhehhhhhhcCCcCCCCCCCccceeecccCCcC-CCCCcCCCcccCcHHH
Q 015785 7 FLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVH-GTGDIACDGYHKYKED 85 (400)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~~-~~~~~a~d~y~~~~eD 85 (400)
+..+-||+||...+++..+.+.+||++|+||+|||||||||++++||||+|+||.|++.+..+ .++++||||||||+||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~ED 87 (497)
T PLN02998 8 LMFLPLLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKED 87 (497)
T ss_pred hhHHHHHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHH
Confidence 334446788887788777888899999999999999999999999999999999998754222 4788999999999999
Q ss_pred HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHH
Q 015785 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f 165 (400)
|+|||+||+++|||||+||||+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|
T Consensus 88 i~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F 167 (497)
T PLN02998 88 VKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDF 167 (497)
T ss_pred HHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHH
Confidence 99999999999999999999999998999999999999999999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEecCCccccccCcccCCCCCCCCCCc--cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHh
Q 015785 166 TAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRKK 243 (400)
Q Consensus 166 ~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~ 243 (400)
++||+.|+++|||+|++|+|||||++++..||..|.+|||.+... ..|+.+++.++.++++||+++|||+|++++|+.
T Consensus 168 ~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~ 247 (497)
T PLN02998 168 TAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQ 247 (497)
T ss_pred HHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999964311 125545555668999999999999999999997
Q ss_pred ---cCCCeEEEEeeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhcccCCCCCHHHHhhhcCCCcE
Q 015785 244 ---YQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADF 320 (400)
Q Consensus 244 ---~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DF 320 (400)
.++++||++++..++||.+++|+|++||++.+++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||
T Consensus 248 ~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DF 327 (497)
T PLN02998 248 YKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDF 327 (497)
T ss_pred hccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCE
Confidence 56889999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEeeeeeeEEEecCCCCCccccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCCC
Q 015785 321 LGVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLSL 398 (400)
Q Consensus 321 iGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~~ 398 (400)
+|||||++.+|+............+..+........+....++||+|+|+|||.+|+++++||+++||||||||+++.
T Consensus 328 lGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~ 405 (497)
T PLN02998 328 VGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIENEYANTPWSLQQILLYVKETYGNPPVYILENGQMTP 405 (497)
T ss_pred EEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCCCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccC
Confidence 999999999997532110000000000000000001111234799999999999999999999866899999999863
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.7e-105 Score=825.48 Aligned_cols=389 Identities=60% Similarity=1.057 Sum_probs=336.2
Q ss_pred hHHHH-HHHHHHHHHhhhhcccccccCCCCCCCeehhehhhhhhcCCcCCCCCCCccceeecccCCcCCCCCcCCCcccC
Q 015785 3 LRLSF-LLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHK 81 (400)
Q Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~~~~~~~a~d~y~~ 81 (400)
|-||| .++.||++..+.- +..+.+.+||++|+||+|||||||||++++||||+|+||.+++.+. +.++++|||||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~Yhr 80 (503)
T PLN02849 3 LILSLFTIFLLLALSSGKC-SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYHK 80 (503)
T ss_pred hHHHHHHHHHHHhcccccc-cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHHh
Confidence 33443 3456666655433 3457778899999999999999999999999999999999987432 3578899999999
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchh
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~ 161 (400)
|+|||+|||+||+++|||||+|+||+|+|.|++|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|+++
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~ 160 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRI 160 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCCCCCCCCC-ccccCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 015785 162 VKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSS-INHCSRGNSSTEPYITVHHVLLAHASVARLY 240 (400)
Q Consensus 162 ~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~llAha~a~~~~ 240 (400)
+++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+.. ...|+.+++.++.++++||+++|||+||+++
T Consensus 161 v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~ 240 (503)
T PLN02849 161 IKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLY 240 (503)
T ss_pred HHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996431 1235444445678999999999999999999
Q ss_pred HHhc---CCCeEEEEeeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhcccCCCCCHHHHhhhcCC
Q 015785 241 RKKY---QRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGS 317 (400)
Q Consensus 241 r~~~---~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~ 317 (400)
|+.+ ++++||++++..++||.+++|+|++||++++++.++||+||++.|+||+.|++.+++++|.++++|+++|+++
T Consensus 241 ~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~ 320 (503)
T PLN02849 241 KQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGS 320 (503)
T ss_pred HHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCC
Confidence 9973 6899999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CcEEEeeeeeeEEEecCCCCCc-cccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCC
Q 015785 318 ADFLGVINYYIVYVKDNPSSLN-KKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSL 396 (400)
Q Consensus 318 ~DFiGiNYYt~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g 396 (400)
+||||||||++.+|+....... .......... .......+++||+|+|+|||++|+++++||+++||||||||++
T Consensus 321 ~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~ 396 (503)
T PLN02849 321 SDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDM----GVSLGKFSAFEYAVAPWAMESVLEYIKQSYGNPPVYILENGTP 396 (503)
T ss_pred CCEEEEeccchhhcccCCCCCCCCCCCcccccc----CCCCCccCCCCCeEChHHHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence 9999999999999975321100 0000111100 0011235789999999999999999999998668999999998
Q ss_pred C
Q 015785 397 S 397 (400)
Q Consensus 397 ~ 397 (400)
.
T Consensus 397 ~ 397 (503)
T PLN02849 397 M 397 (503)
T ss_pred c
Confidence 5
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3.1e-105 Score=823.64 Aligned_cols=371 Identities=60% Similarity=1.021 Sum_probs=324.5
Q ss_pred ccccCCCCCCCeehhehhhhhhcCCcCCCCCCCccceeecccCCcCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccC
Q 015785 24 EYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISW 103 (400)
Q Consensus 24 ~~~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W 103 (400)
.+.+.+||++|+||+|||||||||++++||||+|+||.+++.. .+.++++||||||||+|||+|||+||+++|||||+|
T Consensus 22 ~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~-~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsW 100 (504)
T PLN02814 22 AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCY-NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISW 100 (504)
T ss_pred ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeecc-CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccH
Confidence 3667789999999999999999999999999999999998631 135789999999999999999999999999999999
Q ss_pred CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceE
Q 015785 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYW 183 (400)
Q Consensus 104 ~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w 183 (400)
|||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|++|
T Consensus 101 sRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~W 180 (504)
T PLN02814 101 SRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLW 180 (504)
T ss_pred hhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCccccccCcccCCCCCCCCCCc--cccCCCCCCChhhHHHHHHHHHHHHHHHHHHHh---cCCCeEEEEeeCCcc
Q 015785 184 TTVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRKK---YQRGYIGVNIFAFGL 258 (400)
Q Consensus 184 ~t~NEp~~~~~~gy~~g~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~---~~~~~IG~~~~~~~~ 258 (400)
+|||||++++..||..|.. ||.+... ..|..+++.++.++++||+++|||+||+++|+. .++++||++++..++
T Consensus 181 iT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~ 259 (504)
T PLN02814 181 TTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGL 259 (504)
T ss_pred EeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCcee
Confidence 9999999999999998875 7754321 234334445678999999999999999999986 678999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhcccCCCCCHHHHhhhcCCCcEEEeeeeeeEEEecCCCCC
Q 015785 259 LPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSL 338 (400)
Q Consensus 259 ~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFiGiNYYt~~~v~~~~~~~ 338 (400)
||.+++|+|++||++++++.++||+||++.|+||+.|++.+++++|.++++|+++|++++||||||||++.+|+..+...
T Consensus 260 ~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~ 339 (504)
T PLN02814 260 SPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPS 339 (504)
T ss_pred ecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999997532110
Q ss_pred -ccc-cCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015785 339 -NKK-LRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 397 (400)
Q Consensus 339 -~~~-~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~ 397 (400)
... ...+..+.... .......+++||+|||+|||.+|+++++||+++||||||||+|.
T Consensus 340 ~~~~~~~~~~~~~~~~-~~~~~~~~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~ 399 (504)
T PLN02814 340 IFPSMNEGFFTDMGAY-IISAGNSSFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPM 399 (504)
T ss_pred cccccCCCcccccccc-cCCCCCcCCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 000 00111111000 01112467899999999999999999999987799999999974
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-104 Score=790.01 Aligned_cols=356 Identities=39% Similarity=0.686 Sum_probs=318.3
Q ss_pred CCCCCCCeehhehhhhhhcCCcCCCCCCCccceeeccc---CCc--CCCCCcCCCcccCcHHHHHHHHHcCCCceeeccc
Q 015785 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA---GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSIS 102 (400)
Q Consensus 28 ~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~---~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~ 102 (400)
.+||++||||+||||+|+|||+++||||+|+||+|++. +.. +.+++.||||||||+|||+|||+||+++||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 47999999999999999999999999999999999983 233 5788999999999999999999999999999999
Q ss_pred CCccccCCCC-CCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCc
Q 015785 103 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVS 181 (400)
Q Consensus 103 W~ri~p~g~g-~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~ 181 (400)
||||+|+|.+ ++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||++||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999876 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeCCccccC
Q 015785 182 YWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGVNIFAFGLLPL 261 (400)
Q Consensus 182 ~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~~~~~~~~~P~ 261 (400)
+|+||||||+++..||+.|.+||+..+ .+.++|++||+++|||+|++++|+..|+.+|||+++..+.||.
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~----------~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~ 231 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD----------PKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPL 231 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC----------HHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCC
Confidence 999999999999999999999998764 2578999999999999999999999887799999999999999
Q ss_pred CCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhccc--CCCCCHHHHhhhcC-CCcEEEeeeeeeEE-EecCCCC
Q 015785 262 TNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKG-SADFLGVINYYIVY-VKDNPSS 337 (400)
Q Consensus 262 ~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik~-~~DFiGiNYYt~~~-v~~~~~~ 337 (400)
|++|+|+.||+.++.+.+.+|+||+++|+||..+.+.+++. +|.++++|+++||. ++||||||||++.. ++..+..
T Consensus 232 s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~ 311 (460)
T COG2723 232 SDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRY 311 (460)
T ss_pred CCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCc
Confidence 99999999999999999999999999999999999999875 79999999999985 69999999999544 4443221
Q ss_pred Cc-cccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCCC
Q 015785 338 LN-KKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLSL 398 (400)
Q Consensus 338 ~~-~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~~ 398 (400)
.. ........ . .+ .+.-+.|+|||+|||+|||++|+++++||+ +||||||||+|..
T Consensus 312 ~~~~~~~~~~~-~-~~--~p~~~~sdwGWeI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~ 368 (460)
T COG2723 312 VSGYGPGGFFT-S-VP--NPGLEVSDWGWEIYPKGLYDILEKLYERYG-IPLFITENGLGVK 368 (460)
T ss_pred CCccccccccc-c-cC--CCCCcccCCCceeChHHHHHHHHHHHHHhC-CCeEEecCCCCcc
Confidence 00 00000110 0 00 112246799999999999999999999997 9999999999863
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.9e-100 Score=782.89 Aligned_cols=357 Identities=31% Similarity=0.516 Sum_probs=310.9
Q ss_pred CCCCCCeehhehhhhhhcCCcCCCCCCCccceeecccCCcCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCCcccc
Q 015785 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIP 108 (400)
Q Consensus 29 ~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p 108 (400)
+||++|+||+|||||||||+++++|||+|+||.+.+... ..++++||||||||+|||+|||+||+++|||||+||||+|
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P 81 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNY-WYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFP 81 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCC-CCCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccC
Confidence 599999999999999999999999999999999876311 2377899999999999999999999999999999999999
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecC
Q 015785 109 NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNE 188 (400)
Q Consensus 109 ~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NE 188 (400)
+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+||||
T Consensus 82 ~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NE 159 (467)
T TIGR01233 82 TGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNE 159 (467)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecc
Confidence 99899999999999999999999999999999999999999876 9999999999999999999999998 999999999
Q ss_pred CccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeCCccccCC-CCHHH
Q 015785 189 PNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGVNIFAFGLLPLT-NSTED 267 (400)
Q Consensus 189 p~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~~~~~~~~~P~~-~~~~D 267 (400)
|++++..||+.|.+|||.+.. .++.++++||+++|||+||+++|++.++++||++++..++||.+ ++|+|
T Consensus 160 P~~~~~~gy~~G~~~Pg~~~~---------~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D 230 (467)
T TIGR01233 160 IGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPAD 230 (467)
T ss_pred hhhhhhccchhcccCCCccch---------hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHH
Confidence 999999999999999995321 13578999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHhhhccccCccccCCCChhHHHHhcc----c--CCCCCHHHHhhh---cCCCcEEEeeeeeeEEEecCCCCC
Q 015785 268 AIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS----R--LPAFSDRESKQV---KGSADFLGVINYYIVYVKDNPSSL 338 (400)
Q Consensus 268 ~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~----~--lp~~t~~d~~~i---k~~~DFiGiNYYt~~~v~~~~~~~ 338 (400)
++||++++++.++||+||+++|+||+.|++.++. + +|.++++|+++| ++++||||||||++.+|+......
T Consensus 231 ~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~ 310 (467)
T TIGR01233 231 VRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGET 310 (467)
T ss_pred HHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCcc
Confidence 9999999999999999999999999999997753 2 377999999999 478999999999999997531110
Q ss_pred cc----c---cCCCccCCccc--cccCCCCCCCCCCCcChHHHHHHHHHHHHHcCC-CCEEEecCCCCC
Q 015785 339 NK----K---LRDWNADSATE--IFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGN-PPMYIHENGSLS 397 (400)
Q Consensus 339 ~~----~---~~~~~~~~~~~--~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~-~PI~ITENG~g~ 397 (400)
.. . ........... ......+.++|||+|+|+|||.+|+++++||++ +||||||||+|+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~ 379 (467)
T TIGR01233 311 EIIHNGKGEKGSSKYQIKGVGRRVAPDYVPRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGY 379 (467)
T ss_pred ccccCCccccCcccccCCCcccccCCCCCCcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCC
Confidence 00 0 00000000000 000112457899999999999999999999975 579999999985
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=4.4e-100 Score=783.13 Aligned_cols=358 Identities=32% Similarity=0.543 Sum_probs=311.3
Q ss_pred CCCCCCCeehhehhhhhhcCCcCCCCCCCccceeecccCCcCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCCccc
Q 015785 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLI 107 (400)
Q Consensus 28 ~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~ 107 (400)
.+||++|+||+|||||||||++++||||+|+||.|++... ..++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~ 81 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENY-WFTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIF 81 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCC-CCCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcC
Confidence 4599999999999999999999999999999999986421 137899999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEec
Q 015785 108 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVN 187 (400)
Q Consensus 108 p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~N 187 (400)
|+|.|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+|||
T Consensus 82 P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~N 159 (469)
T PRK13511 82 PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFN 159 (469)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEcc
Confidence 998899999999999999999999999999999999999999976 9999999999999999999999999 99999999
Q ss_pred CCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeCCccccCC-CCHH
Q 015785 188 EPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGVNIFAFGLLPLT-NSTE 266 (400)
Q Consensus 188 Ep~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~~~~~~~~~P~~-~~~~ 266 (400)
||++++..||..|.+|||.+.. .++.++++||+++|||+||+++|+..++++||++++..+++|.+ ++|+
T Consensus 160 EP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~ 230 (469)
T PRK13511 160 EIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPE 230 (469)
T ss_pred chhhhhhcchhhcccCCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHH
Confidence 9999999999999999996421 13579999999999999999999998999999999999999999 8999
Q ss_pred HHHHHHHHHHhhhccccCccccCCCChhHHHHhcc-----c-CCCCCHHHHhhhcC---CCcEEEeeeeeeEEEecCCCC
Q 015785 267 DAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS-----R-LPAFSDRESKQVKG---SADFLGVINYYIVYVKDNPSS 337 (400)
Q Consensus 267 D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~-----~-lp~~t~~d~~~ik~---~~DFiGiNYYt~~~v~~~~~~ 337 (400)
|++||++++++.++||+||+++|+||+.|++.++. . .+.||++|+++|++ ++||||||||++.+|+..+..
T Consensus 231 d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~ 310 (469)
T PRK13511 231 DVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGE 310 (469)
T ss_pred HHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCc
Confidence 99999999999999999999999999999987741 1 24799999999974 589999999999999753211
Q ss_pred Ccc--ccCC-Ccc----CCccc--cccCCCCCCCCCCCcChHHHHHHHHHHHHHcCC-CCEEEecCCCCC
Q 015785 338 LNK--KLRD-WNA----DSATE--IFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGN-PPMYIHENGSLS 397 (400)
Q Consensus 338 ~~~--~~~~-~~~----~~~~~--~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~-~PI~ITENG~g~ 397 (400)
... .... ... ..... ......+.+++||+|+|+||+.+|++++++|++ +||||||||+|.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~ 380 (469)
T PRK13511 311 TEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGY 380 (469)
T ss_pred cccccCCCCccccccccccCccccccCCCCCcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCC
Confidence 000 0000 000 00000 000122457899999999999999999999986 589999999983
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.3e-100 Score=783.07 Aligned_cols=355 Identities=31% Similarity=0.484 Sum_probs=307.7
Q ss_pred cCCCCCCCeehhehhhhhhcCCcCCCCCCCccceeeccc-CCc--------------C--CCCCcCCCcccCcHHHHHHH
Q 015785 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLM 89 (400)
Q Consensus 27 ~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~-~~~--------------~--~~~~~a~d~y~~~~eDi~l~ 89 (400)
..+||++|+||+|||||||||++++||||+|+||.|++. ++. + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 456999999999999999999999999999999998873 221 0 15788999999999999999
Q ss_pred HHcCCCceeecccCCccccCCC-CCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHH
Q 015785 90 ADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAY 168 (400)
Q Consensus 90 ~~lG~~~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 168 (400)
|+||+++|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999974 569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCceEEEecCCccccccCcc-cCC-CCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCC
Q 015785 169 ADVCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQR 246 (400)
Q Consensus 169 a~~~~~~~~d~v~~w~t~NEp~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~ 246 (400)
|+.|+++|||+|++|+|||||++++..||. .|. +|||.. +..+.++++||+++|||+|++++|+..++
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~----------~~~~~~~a~h~~llAHa~A~~~~~~~~~~ 232 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN----------KEQVKYQAAHHELVASAIATKIAHEVDPE 232 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc----------hhhhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999888876 343 366532 12457999999999999999999999999
Q ss_pred CeEEEEeeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhccc--CCCCCHHHHhhhc-CCCcEEEe
Q 015785 247 GYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVK-GSADFLGV 323 (400)
Q Consensus 247 ~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik-~~~DFiGi 323 (400)
++||++++..+++|.+++|+|++||++++ +.++||+||+++|+||+.|++.++++ +|.|+++|+++|+ +++|||||
T Consensus 233 g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGi 311 (478)
T PRK09593 233 NKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISF 311 (478)
T ss_pred CeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEE
Confidence 99999999999999999999999999987 45889999999999999999999753 6889999999996 89999999
Q ss_pred eeeeeEEEecCCCCCccccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015785 324 INYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 397 (400)
Q Consensus 324 NYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~ 397 (400)
|||++.+|+..+........+... ....+....+++||+|+|+||+.+|+++++||+ .||||||||+++
T Consensus 312 NyYt~~~v~~~~~~~~~~~~~~~~----~~~~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~ 380 (478)
T PRK09593 312 SYYSSRVASGDPKVNEKTAGNIFA----SLKNPYLKASEWGWQIDPLGLRITLNTIWDRYQ-KPMFIVENGLGA 380 (478)
T ss_pred ecccCcccccCCCCCCCCCCCccc----cccCCCcccCCCCCEECHHHHHHHHHHHHHHcC-CCEEEEcCCCCC
Confidence 999999997532100000000000 000011236789999999999999999999996 699999999984
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=4.1e-101 Score=790.62 Aligned_cols=360 Identities=49% Similarity=0.881 Sum_probs=310.2
Q ss_pred cCCCCCCCeehhehhhhhhcCCcCCCCCCCccceeeccc-CCc--CCCCCcCCCcccCcHHHHHHHHHcCCCceeecccC
Q 015785 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISW 103 (400)
Q Consensus 27 ~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~-~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W 103 (400)
+.+||++||||+|||||||||++++||||+|+||.|++. +++ +.++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 357999999999999999999999999999999999987 444 56789999999999999999999999999999999
Q ss_pred CccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCce
Q 015785 104 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSY 182 (400)
Q Consensus 104 ~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~ 182 (400)
+||+|+| +|.+|++++++|+++|++|+++||+|+|||+|||+|+||++ +|||.|+++++.|++||+.|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 89999999999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred EEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeCCccccCC
Q 015785 183 WTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGVNIFAFGLLPLT 262 (400)
Q Consensus 183 w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~~~~~~~~~P~~ 262 (400)
|+|||||++++..||+.|.+|||..+ .++.++++||+++||++|++++|+++++++||++++..+++|.+
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~----------~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~ 230 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS----------LKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLS 230 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST----------HHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESS
T ss_pred EEeccccceeeccccccccccccccc----------cchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCC
Confidence 99999999999999999999999553 35789999999999999999999999999999999999999999
Q ss_pred CCHHHH-HHHHHHHHhhhccccCccccCCCChhHHHHhccc--CCCCCHHHHhhhcCCCcEEEeeeeeeEEEecCCCCCc
Q 015785 263 NSTEDA-IATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSLN 339 (400)
Q Consensus 263 ~~~~D~-~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik~~~DFiGiNYYt~~~v~~~~~~~~ 339 (400)
++++|. +||++.+++.++||+||+++|+||..|++.++++ +|.||++|++.|++++||+|||||++.+|+..+....
T Consensus 231 ~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~ 310 (455)
T PF00232_consen 231 PSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSS 310 (455)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTS
T ss_pred ccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCccccc
Confidence 988776 8999999999999999999999999999999987 9999999999999999999999999999987542211
Q ss_pred cccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCCC
Q 015785 340 KKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLSL 398 (400)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~~ 398 (400)
............. .....+.+++||+|+|+|||++|++++++|+++||+|||||+++.
T Consensus 311 ~~~~~~~~~~~~~-~~~~~~~t~~gw~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~ 368 (455)
T PF00232_consen 311 PPSYDSDAPFGQP-YNPGGPTTDWGWEIYPEGLRDVLRYLKDRYGNPPIYITENGIGDP 368 (455)
T ss_dssp STTHEEEESEEEE-CETSSEBCTTSTBBETHHHHHHHHHHHHHHTSSEEEEEEE---EE
T ss_pred cccccCCcccccc-ccccccccccCcccccchHhhhhhhhccccCCCcEEEeccccccc
Confidence 0000000000000 001234688999999999999999999999889999999999864
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=3.2e-99 Score=776.22 Aligned_cols=353 Identities=31% Similarity=0.532 Sum_probs=303.0
Q ss_pred CCCCCCeehhehhhhhhcCCcCCCCCCCccceeec---cc--CCc------C--CCCCcCCCcccCcHHHHHHHHHcCCC
Q 015785 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------H--GTGDIACDGYHKYKEDVKLMADTGLD 95 (400)
Q Consensus 29 ~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~---~~--~~~------~--~~~~~a~d~y~~~~eDi~l~~~lG~~ 95 (400)
+||++|+||+|||||||||++++||||+|+||.|+ +. +++ + .++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 31 211 1 15688999999999999999999999
Q ss_pred ceeecccCCccccCCC-CCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHH
Q 015785 96 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (400)
Q Consensus 96 ~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 174 (400)
+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999984 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEecCCcccccc-----Ccc-cCC-CCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 015785 175 QFGDRVSYWTTVNEPNAFANL-----GYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRG 247 (400)
Q Consensus 175 ~~~d~v~~w~t~NEp~~~~~~-----gy~-~g~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~ 247 (400)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....++++||+++|||+|++++|+..+++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~----------~~~~~~~~~h~~llAha~A~~~~~~~~~~~ 232 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED----------REQIMYQAAHYELVASALAVKTGHEINPDF 232 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998766 444 333 255531 123479999999999999999999999999
Q ss_pred eEEEEeeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhccc--CCCCCHHHHhhh-cCCCcEEEee
Q 015785 248 YIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQV-KGSADFLGVI 324 (400)
Q Consensus 248 ~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~i-k~~~DFiGiN 324 (400)
+||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++||||||
T Consensus 233 ~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiN 311 (476)
T PRK09589 233 QIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFS 311 (476)
T ss_pred cEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEe
Confidence 999999999999999999999999998854 679999999999999999999874 478999999999 5899999999
Q ss_pred eeeeEEEecCCCCCccccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015785 325 NYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 397 (400)
Q Consensus 325 YYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~ 397 (400)
||++.+|+..+.... .....+... ...+....+++||+|+|+|||.+|+++++||+ +||||||||+|.
T Consensus 312 yYts~~v~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~~Y~-~Pi~ItENG~~~ 379 (476)
T PRK09589 312 YYMSFATKFHEDNPQ---LDYVETRDL-VSNPYVKASEWGWQIDPAGLRYSLNWFWDHYQ-LPLFIVENGFGA 379 (476)
T ss_pred cccCcccccCCCCCC---CCccccccc-ccCCCcccCCCCCccCcHHHHHHHHHHHHhcC-CCEEEEeCCccc
Confidence 999999975221100 000000000 00111236789999999999999999999996 799999999984
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.3e-98 Score=769.42 Aligned_cols=355 Identities=30% Similarity=0.544 Sum_probs=305.0
Q ss_pred ccCCCCCCCeehhehhhhhhcCCcCCCCCCCccceeec---cc--CCc------C--CCCCcCCCcccCcHHHHHHHHHc
Q 015785 26 SKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------H--GTGDIACDGYHKYKEDVKLMADT 92 (400)
Q Consensus 26 ~~~~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~---~~--~~~------~--~~~~~a~d~y~~~~eDi~l~~~l 92 (400)
.+.+||++|+||+|||||||||++++||||+|+||.|+ +. +++ + .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 31 111 1 26688999999999999999999
Q ss_pred CCCceeecccCCccccCCC-CCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHH
Q 015785 93 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADV 171 (400)
Q Consensus 93 G~~~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~ 171 (400)
|+++|||||+|+||+|+|. |.+|++||++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999984 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceEEEecCCccc-----cccCccc-CCC-CCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 015785 172 CFRQFGDRVSYWTTVNEPNAF-----ANLGYDY-GIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKY 244 (400)
Q Consensus 172 ~~~~~~d~v~~w~t~NEp~~~-----~~~gy~~-g~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~ 244 (400)
||++|||+|++|+|||||+++ +..||.. |.+ ||+.. .....++++||+++|||+|++++|+..
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~----------~~~~~~~~~h~~llAHa~A~~~~~~~~ 231 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN----------PEETMYQVLHHQFVASALAVKAARRIN 231 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987 6678874 664 44321 124579999999999999999999999
Q ss_pred CCCeEEEEeeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhcccC--CCCCHHHHhhh-cCCCcEE
Q 015785 245 QRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRL--PAFSDRESKQV-KGSADFL 321 (400)
Q Consensus 245 ~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~l--p~~t~~d~~~i-k~~~DFi 321 (400)
++++||++++..++||.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| ++++|||
T Consensus 232 ~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFl 310 (477)
T PRK15014 232 PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYL 310 (477)
T ss_pred CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEE
Confidence 99999999999999999999999999998773 23359999999999999999998763 78999999999 5899999
Q ss_pred EeeeeeeEEEecCCCCCccccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015785 322 GVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 397 (400)
Q Consensus 322 GiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~ 397 (400)
|||||+|.+|+..+.... ....+.. ..+ .+....+++||+|+|+|||.+|+++++||+ +||||||||+|+
T Consensus 311 GiNyYt~~~v~~~~~~~~-~~~~~~~--~~~--~~~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~ 380 (477)
T PRK15014 311 GFSYYMTNAVKAEGGTGD-AISGFEG--SVP--NPYVKASDWGWQIDPVGLRYALCELYERYQ-KPLFIVENGFGA 380 (477)
T ss_pred EEcceeCeeeccCCCCCC-Ccccccc--ccC--CCCcccCCCCCccCcHHHHHHHHHHHHhcC-CCEEEeCCCCCC
Confidence 999999999975321000 0000100 001 011136789999999999999999999996 699999999985
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.3e-97 Score=762.61 Aligned_cols=353 Identities=29% Similarity=0.480 Sum_probs=308.5
Q ss_pred CCCCCCeehhehhhhhhcCCcCCCCCCCccceeeccc-CCc--------------C--CCCCcCCCcccCcHHHHHHHHH
Q 015785 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLMAD 91 (400)
Q Consensus 29 ~fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~-~~~--------------~--~~~~~a~d~y~~~~eDi~l~~~ 91 (400)
+||++|+||+|||||||||++++||||+|+||.+++. +++ + .++++||||||||+||++||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999999873 221 1 1568899999999999999999
Q ss_pred cCCCceeecccCCccccCCC-CCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHH
Q 015785 92 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYAD 170 (400)
Q Consensus 92 lG~~~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 170 (400)
||+++|||||+|+||+|+|. +.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999974 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEecCCccccccCcc-cCC-CCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015785 171 VCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGY 248 (400)
Q Consensus 171 ~~~~~~~d~v~~w~t~NEp~~~~~~gy~-~g~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~ 248 (400)
.|+++|||+|++|+|||||++++..||. .|. +|||... ....++++||+++|||+|++++|+..++++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~~~~~ 232 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ----------DQVKYQAAHHELVASALATKIAHEVNPQNQ 232 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc----------hHhHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 9999999999999999999999999996 564 4786421 235799999999999999999999999999
Q ss_pred EEEEeeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhccc--CCCCCHHHHhhhcCCCcEEEeeee
Q 015785 249 IGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGVINY 326 (400)
Q Consensus 249 IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik~~~DFiGiNYY 326 (400)
||++++..++||.+++|+|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||||||
T Consensus 233 IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyY 311 (474)
T PRK09852 233 VGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYY 311 (474)
T ss_pred EEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccc
Confidence 999999999999999999999998877 55889999999999999999999864 789999999999999999999999
Q ss_pred eeEEEecCCCCCccccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015785 327 YIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 397 (400)
Q Consensus 327 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~ 397 (400)
++.+|+............... ... .+....+++||+|+|+|||.+|+++++||+ +||||||||+|.
T Consensus 312 t~~~v~~~~~~~~~~~~~~~~--~~~--~p~~~~~~~gw~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG~~~ 377 (474)
T PRK09852 312 ASRCASAEMNANNSSAANVVK--SLR--NPYLQVSDWGWGIDPLGLRITMNMMYDRYQ-KPLFLVENGLGA 377 (474)
T ss_pred cCeecccCCCCCCCCcCCcee--ccc--CCCcccCCCCCeeChHHHHHHHHHHHHhcC-CCEEEeCCCCCC
Confidence 999997532100000000000 000 111236789999999999999999999996 689999999984
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=6.7e-97 Score=751.93 Aligned_cols=346 Identities=42% Similarity=0.777 Sum_probs=314.3
Q ss_pred CCCCCeehhehhhhhhcCCcCCCCCCCccceeeccc-CCc--CCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCCcc
Q 015785 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (400)
Q Consensus 30 fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~-~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri 106 (400)
||++||||+|||||||||+++++|||+|+||.+++. ++. +.++++||||||+|+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999874 333 34788999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEe
Q 015785 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (400)
Q Consensus 107 ~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 186 (400)
+|+|+|.+|++++++|+++|++|+++||+|+|||||||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998899999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred cCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeCCccccCCCCHH
Q 015785 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGVNIFAFGLLPLTNSTE 266 (400)
Q Consensus 187 NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~~~~~~~~~P~~~~~~ 266 (400)
|||++++..||..|.+||+.++. ...++++||+++|||+|++++|++.|+++||++++..++||.+++|+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~----------~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~ 229 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL----------RAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPE 229 (427)
T ss_pred cCcceecccchhhccCCCCCccH----------HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHH
Confidence 99999999999999899985421 34789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccccCccccCCCChhHHHHhcccCCCCCHHHHhhhcCCCcEEEeeeeeeEEEecCCCCCccccCCCc
Q 015785 267 DAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSLNKKLRDWN 346 (400)
Q Consensus 267 D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFiGiNYYt~~~v~~~~~~~~~~~~~~~ 346 (400)
|+.||++++++.++||+||++.|+||+.|++.++. +|.+|++|++++++++||||||||++.+|+...... ....
T Consensus 230 d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~----~~~~ 304 (427)
T TIGR03356 230 DVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG----AGFV 304 (427)
T ss_pred HHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC----CCcc
Confidence 99999999999999999999999999999999974 699999999999999999999999999997532110 0000
Q ss_pred cCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCCC
Q 015785 347 ADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSLS 397 (400)
Q Consensus 347 ~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g~ 397 (400)
.. ....+.+++||+|+|+|||.+|+++++||+++||||||||+|+
T Consensus 305 ----~~--~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~ 349 (427)
T TIGR03356 305 ----EV--PEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYITENGAAF 349 (427)
T ss_pred ----cc--CCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEEeCCCCCc
Confidence 00 0122357799999999999999999999986789999999984
No 14
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.38 E-value=2.7e-12 Score=122.95 Aligned_cols=145 Identities=19% Similarity=0.207 Sum_probs=108.2
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccc-cCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCC-CC
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW-IN 158 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~-p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~-~~ 158 (400)
..++|++.||++|+|++|+.|.|..++ |...+.++...+++++++|+.+.++||.++|++|+. |.|.... +++ ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 578999999999999999999998888 553346899999999999999999999999999975 6674322 223 33
Q ss_pred chhHHHHHHHHHHHHHHhcC--CCceEEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHH
Q 015785 159 RTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASV 236 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a 236 (400)
....+.|.++++.++++|++ .|..|.++|||...... ..+ +. .....+.....++
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~----~~w-~~------------------~~~~~~~~~~~~~ 155 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDD----ANW-NA------------------QNPADWQDWYQRA 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTST----TTT-SH------------------HHTHHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCc----ccc-cc------------------ccchhhhhHHHHH
Confidence 45678899999999999955 58899999999964321 001 00 0111233445778
Q ss_pred HHHHHHhcCCCeEEE
Q 015785 237 ARLYRKKYQRGYIGV 251 (400)
Q Consensus 237 ~~~~r~~~~~~~IG~ 251 (400)
+++||+..|+..|-+
T Consensus 156 ~~~Ir~~~~~~~i~~ 170 (281)
T PF00150_consen 156 IDAIRAADPNHLIIV 170 (281)
T ss_dssp HHHHHHTTSSSEEEE
T ss_pred HHHHHhcCCcceeec
Confidence 899999988865543
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.36 E-value=1.1e-12 Score=132.12 Aligned_cols=109 Identities=24% Similarity=0.443 Sum_probs=88.0
Q ss_pred cCcHHHHHHHHHcCCCceee-cccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhh-----
Q 015785 80 HKYKEDVKLMADTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY----- 153 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~----- 153 (400)
+.+++|+++||++|+|++|+ .++|+++||+ +|++| +..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999997 5799999999 89999 78899999999999999999999999999998653
Q ss_pred ----------CC-----CCCchhHHHHHHHHHHHHHHhcCC--CceEEEecCCccc
Q 015785 154 ----------GG-----WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNAF 192 (400)
Q Consensus 154 ----------gg-----~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~~ 192 (400)
|+ ..++...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 124567788888899999999985 7789999999853
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.30 E-value=1.7e-10 Score=110.27 Aligned_cols=82 Identities=20% Similarity=0.364 Sum_probs=71.2
Q ss_pred cCCccccCCCCCCChhhhHHHHHHHHHHHHcCCce--eEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCC
Q 015785 102 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (400)
Q Consensus 102 ~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p--~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~ 179 (400)
.|++++|+ +|.+| ++..|++++.++++||++ ...+.|...|.|+... + .++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCCc
Confidence 69999999 89999 677889999999999995 3456677899998632 2 5577899999999999999999
Q ss_pred CceEEEecCCcc
Q 015785 180 VSYWTTVNEPNA 191 (400)
Q Consensus 180 v~~w~t~NEp~~ 191 (400)
|..|.++|||..
T Consensus 74 i~~wdV~NE~~~ 85 (254)
T smart00633 74 IYAWDVVNEALH 85 (254)
T ss_pred ceEEEEeeeccc
Confidence 999999999985
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.06 E-value=1.2e-08 Score=100.72 Aligned_cols=207 Identities=19% Similarity=0.265 Sum_probs=125.5
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeecc---CCCcHhHHhhhCCCCC-
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---FDLPQALEDEYGGWIN- 158 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h---~~~P~~l~~~~gg~~~- 158 (400)
++=+++||+.|+|++|+-+ | +.|...|..| ++.-.++..+++++||+.+|++|- |.-|.--. .-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCCCC
Confidence 4457999999999999988 4 5576226666 778889999999999999999873 22232211 1256887
Q ss_pred --chhHHHHHHHHHHHHHHhcC---CCceEEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHH
Q 015785 159 --RTIVKDFTAYADVCFRQFGD---RVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAH 233 (400)
Q Consensus 159 --~~~~~~f~~ya~~~~~~~~d---~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAh 233 (400)
.+..+.-.+|.+.+.+.+++ .++.+.+=||.+. |.+ +|.|... .+.-.-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~----Gml---wp~g~~~-------------~~~~~a~ll~a- 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN----GML---WPDGKPS-------------NWDNLAKLLNA- 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG----EST---BTTTCTT--------------HHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc----ccc---CcCCCcc-------------CHHHHHHHHHH-
Confidence 56778889999999888865 4788899999884 221 3444321 12233344444
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhcccCCCCCHHHHhh
Q 015785 234 ASVARLYRKKYQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQ 313 (400)
Q Consensus 234 a~a~~~~r~~~~~~~IG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ 313 (400)
+++++|+..|+.+|.+.+.. +.|.... .||.|-+ +.
T Consensus 159 --g~~AVr~~~p~~kV~lH~~~---------~~~~~~~--------~~~f~~l-------------------------~~ 194 (332)
T PF07745_consen 159 --GIKAVREVDPNIKVMLHLAN---------GGDNDLY--------RWFFDNL-------------------------KA 194 (332)
T ss_dssp --HHHHHHTHSSTSEEEEEES----------TTSHHHH--------HHHHHHH-------------------------HH
T ss_pred --HHHHHHhcCCCCcEEEEECC---------CCchHHH--------HHHHHHH-------------------------Hh
Confidence 55666778899888665542 1122111 1222211 11
Q ss_pred hcCCCcEEEeeeeeeEEEecCCCCCccccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecC
Q 015785 314 VKGSADFLGVINYYIVYVKDNPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHEN 393 (400)
Q Consensus 314 ik~~~DFiGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITEN 393 (400)
.....|.||++||. .|.-....|+..|+.+.+||+ +||+|+|.
T Consensus 195 ~g~d~DviGlSyYP------------------------------------~w~~~l~~l~~~l~~l~~ry~-K~V~V~Et 237 (332)
T PF07745_consen 195 AGVDFDVIGLSYYP------------------------------------FWHGTLEDLKNNLNDLASRYG-KPVMVVET 237 (332)
T ss_dssp TTGG-SEEEEEE-S------------------------------------TTST-HHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred cCCCcceEEEecCC------------------------------------CCcchHHHHHHHHHHHHHHhC-CeeEEEec
Confidence 12345999999993 133356789999999999995 99999999
Q ss_pred CCCCC
Q 015785 394 GSLSL 398 (400)
Q Consensus 394 G~g~~ 398 (400)
|+..-
T Consensus 238 ~yp~t 242 (332)
T PF07745_consen 238 GYPWT 242 (332)
T ss_dssp ---SB
T ss_pred ccccc
Confidence 98653
No 18
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=8.6e-08 Score=101.96 Aligned_cols=113 Identities=20% Similarity=0.384 Sum_probs=88.5
Q ss_pred CcHHHHHHHHHcCCCceeec-ccCCccccCCCCCCChhhhHHHHHH-HHHHHHcCCceeEee-ccCCCcHhHHhhh----
Q 015785 81 KYKEDVKLMADTGLDAYRFS-ISWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHFDLPQALEDEY---- 153 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~s-i~W~ri~p~g~g~~n~~~~~~y~~~-i~~l~~~Gi~p~~tL-~h~~~P~~l~~~~---- 153 (400)
-|++|++.||++|+|++|.+ ++|++++|+ +|.+| +.+.|.. ++.+.+.||.+++.. .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 37889999999999999995 699999999 89999 5577887 999999999999998 7788999998765
Q ss_pred -----------CCCCCchhHH-HHHHHHHH----HHHH-hcCC--CceEEEecCCcc-ccccCc
Q 015785 154 -----------GGWINRTIVK-DFTAYADV----CFRQ-FGDR--VSYWTTVNEPNA-FANLGY 197 (400)
Q Consensus 154 -----------gg~~~~~~~~-~f~~ya~~----~~~~-~~d~--v~~w~t~NEp~~-~~~~gy 197 (400)
|+|.+-.... .|..|++. +++| ||+. |-.|.+-||-.. .+...|
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~ 170 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDY 170 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccc
Confidence 5564333222 35555555 7888 7774 677999999765 344333
No 19
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=7.7e-05 Score=71.40 Aligned_cols=240 Identities=17% Similarity=0.239 Sum_probs=140.1
Q ss_pred CCCCCCCeehhehhh-hhhcCCcCCCCCCCccceeecccCCcCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCCcc
Q 015785 28 NDFPPGFLFGASTSA-YQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (400)
Q Consensus 28 ~~fp~~FlwG~Atsa-~QvEG~~~~dgkg~s~Wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri 106 (400)
...|+||+-|+-.|. .|+|-. ++| |... ++. -++-++.+|+.|+|.+|+-|-=.--
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~---Gvk-------f~d~-----ng~--------~qD~~~iLK~~GvNyvRlRvwndP~ 89 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS---GVK-------FFDT-----NGV--------RQDALQILKNHGVNYVRLRVWNDPY 89 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc---Cce-------EEcc-----CCh--------HHHHHHHHHHcCcCeEEEEEecCCc
Confidence 348999999997654 677732 222 2111 111 1344799999999999998731111
Q ss_pred ccCCC----CCCChhhhHHHHHHHHHHHHcCCceeEeec---cCCCcHhHHhhhCCCCCc---hhHHHHHHHHHHHHHHh
Q 015785 107 IPNGR----GPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLPQALEDEYGGWINR---TIVKDFTAYADVCFRQF 176 (400)
Q Consensus 107 ~p~g~----g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~---h~~~P~~l~~~~gg~~~~---~~~~~f~~ya~~~~~~~ 176 (400)
--+|. |.=| ++.--++-++++++||+++++.| ||.-|..- ++-..|.+- ....+--+|.+.+..++
T Consensus 90 dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~l~~m 165 (403)
T COG3867 90 DSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYVLTTM 165 (403)
T ss_pred cCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 11121 2223 55566778899999999999987 45556432 222446542 33445556777777666
Q ss_pred cC---CCceEEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 015785 177 GD---RVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGVNI 253 (400)
Q Consensus 177 ~d---~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~~~ 253 (400)
.+ ....-.+=||-+- |++ ||-|... -+.-+-.++. .+++++||..|..+|-+.+
T Consensus 166 ~~eGi~pdmVQVGNEtn~----gfl---wp~Ge~~-------------~f~k~a~L~n---~g~~avrev~p~ikv~lHl 222 (403)
T COG3867 166 KKEGILPDMVQVGNETNG----GFL---WPDGEGR-------------NFDKMAALLN---AGIRAVREVSPTIKVALHL 222 (403)
T ss_pred HHcCCCccceEeccccCC----cee---ccCCCCc-------------ChHHHHHHHH---HHhhhhhhcCCCceEEEEe
Confidence 54 4566678899762 332 5544321 1222333444 3566777888877765543
Q ss_pred eCCccccCCCCHHHHHHHHHHHHhhhccccCccccCCCChhHHHHhcccCCCCCHHHHhhhcCCCcEEEeeeeeeEEEec
Q 015785 254 FAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKD 333 (400)
Q Consensus 254 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFiGiNYYt~~~v~~ 333 (400)
. .|.+++ ..+|+.|-+.+ -.-..|.||++||.- +.
T Consensus 223 a----~g~~n~-------------~y~~~fd~ltk-------------------------~nvdfDVig~SyYpy--Wh- 257 (403)
T COG3867 223 A----EGENNS-------------LYRWIFDELTK-------------------------RNVDFDVIGSSYYPY--WH- 257 (403)
T ss_pred c----CCCCCc-------------hhhHHHHHHHH-------------------------cCCCceEEeeecccc--cc-
Confidence 3 222221 12333332111 112459999999942 11
Q ss_pred CCCCCccccCCCccCCccccccCCCCCCCCCCCcChHHHHHHHHHHHHHcCCCCEEEecCCCC
Q 015785 334 NPSSLNKKLRDWNADSATEIFFNLDTASSNEFPIQPLGLQRVLEHFKQLYGNPPMYIHENGSL 396 (400)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~I~P~GL~~~L~~i~~rY~~~PI~ITENG~g 396 (400)
=.=.-|...|..+..||+ +.+||.|.+.+
T Consensus 258 ---------------------------------gtl~nL~~nl~dia~rY~-K~VmV~Etay~ 286 (403)
T COG3867 258 ---------------------------------GTLNNLTTNLNDIASRYH-KDVMVVETAYT 286 (403)
T ss_pred ---------------------------------CcHHHHHhHHHHHHHHhc-CeEEEEEecce
Confidence 111458888999999995 89999998764
No 20
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=1.8e-06 Score=88.14 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCC---CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhh--h-CCC
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE--Y-GGW 156 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~--~-gg~ 156 (400)
++|+..||+.|+|++|+.+.|-.+.+.+ +.-.+...+.+.+++|+.+++.||.+++++|+..-+.-=.+. + +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866655532 222224456699999999999999999999987622211111 0 122
Q ss_pred C-CchhHHHHHHHHHHHHHHhcCC--CceEEEecCCcc
Q 015785 157 I-NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (400)
Q Consensus 157 ~-~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 191 (400)
. ....++++.+-++.++.||++. |-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3467799999999999999984 444689999995
No 21
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.30 E-value=2.8e-06 Score=88.73 Aligned_cols=140 Identities=22% Similarity=0.333 Sum_probs=81.7
Q ss_pred cHHHHHHHH-HcCCCceeec--c--cCCcccc-CCCCC--CChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhh-
Q 015785 82 YKEDVKLMA-DTGLDAYRFS--I--SWSRLIP-NGRGP--VNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE- 152 (400)
Q Consensus 82 ~~eDi~l~~-~lG~~~~R~s--i--~W~ri~p-~g~g~--~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~- 152 (400)
+.+.+..++ ++|++.+||- + +..-... ++.|. +| +...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 566666664 9999999986 2 2222222 22332 78 888999999999999999999975 77776422
Q ss_pred -----hCCCC-CchhHHHHHHHHHHHHHHhcC-----CCc--eEEEecCCccccccCcccCCCCCCCCCCccccCCCCCC
Q 015785 153 -----YGGWI-NRTIVKDFTAYADVCFRQFGD-----RVS--YWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSS 219 (400)
Q Consensus 153 -----~gg~~-~~~~~~~f~~ya~~~~~~~~d-----~v~--~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~ 219 (400)
+.|+. .++..+.|.++++.+++|+-+ .|. +|++||||+...+ +..+.
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~------------- 175 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT------------- 175 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG--------------
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC-------------
Confidence 12232 346778888888777766644 355 5699999997321 11110
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Q 015785 220 TEPYITVHHVLLAHASVARLYRKKYQRGYIGVN 252 (400)
Q Consensus 220 ~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~~ 252 (400)
.+.| +.-...+++++|+..|+.+||--
T Consensus 176 ~~ey------~~ly~~~~~~iK~~~p~~~vGGp 202 (486)
T PF01229_consen 176 PEEY------FELYDATARAIKAVDPELKVGGP 202 (486)
T ss_dssp HHHH------HHHHHHHHHHHHHH-TTSEEEEE
T ss_pred HHHH------HHHHHHHHHHHHHhCCCCcccCc
Confidence 1111 12234467788888999999864
No 22
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.11 E-value=9.5e-05 Score=79.37 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHh-------hh
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED-------EY 153 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~-------~~ 153 (400)
.+..|+++||++|+|++|+|- .|. + ..+++.|=+.||-++.-+.-+....|... ..
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~ 376 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 478899999999999999962 243 2 25677888899988765532222222210 00
Q ss_pred CCCC----CchhHHHHHHHHHHHHHHhcCC--CceEEEecCCc
Q 015785 154 GGWI----NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (400)
Q Consensus 154 gg~~----~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (400)
..|. +++..+.+.+-++.++++++.+ |-.|.+-||+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 1222 3466788888899999999887 66899999974
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.92 E-value=4e-05 Score=75.86 Aligned_cols=122 Identities=18% Similarity=0.312 Sum_probs=86.5
Q ss_pred CCCCCeehhehhhhhhcCCcCCCCCCCccceeecccCCcCCCCCcCCCcccCcHHHHHHHHHcCCCceee--cccCCccc
Q 015785 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRF--SISWSRLI 107 (400)
Q Consensus 30 fp~~FlwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~--si~W~ri~ 107 (400)
.+.+|.+|+|.++.++++.. .|++ +-.--+|.+-. ...|..++
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-------------------------------~~~~----~~~~~Fn~~t~eN~~Kw~~~e 50 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-------------------------------RYRE----LFAKHFNSVTPENEMKWGSIE 50 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-------------------------------HHHH----HHHHH-SEEEESSTTSHHHHE
T ss_pred HhccCCEEEEechhHcCCcH-------------------------------HHHH----HHHHhCCeeeeccccchhhhc
Confidence 45789999999999988631 0111 11123444444 47899999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCceeE--eeccCCCcHhHHhhhCCCCCch---hHHHHHHHHHHHHHHhc--CCC
Q 015785 108 PNGRGPVNPKGLQYYNNLINELISYGIQPHV--TLHHFDLPQALEDEYGGWINRT---IVKDFTAYADVCFRQFG--DRV 180 (400)
Q Consensus 108 p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~--tL~h~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~~--d~v 180 (400)
|. +|.+| ++..|++++.++++||++-- -+.|--.|.|+... .-+...+ ..+...+|.+.+++||+ .+|
T Consensus 51 ~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i 125 (320)
T PF00331_consen 51 PE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRI 125 (320)
T ss_dssp SB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTE
T ss_pred CC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccce
Confidence 99 89999 66789999999999999873 34466789999743 1223223 78889999999999999 489
Q ss_pred ceEEEecCCcc
Q 015785 181 SYWTTVNEPNA 191 (400)
Q Consensus 181 ~~w~t~NEp~~ 191 (400)
..|-+.|||..
T Consensus 126 ~~WDVvNE~i~ 136 (320)
T PF00331_consen 126 YAWDVVNEAID 136 (320)
T ss_dssp SEEEEEES-B-
T ss_pred EEEEEeeeccc
Confidence 99999999974
No 24
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.0014 Score=63.86 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=74.5
Q ss_pred HHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeE-e-eccCCCcHhHHhhhCCCCCchhHHHHHH
Q 015785 90 ADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV-T-LHHFDLPQALEDEYGGWINRTIVKDFTA 167 (400)
Q Consensus 90 ~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~-t-L~h~~~P~~l~~~~gg~~~~~~~~~f~~ 167 (400)
++.+.=+-=--..|.-|+|+ +|.+| ++.=|.+++-++++||..-- | +.|--.|.|+.. .-+..+...+...+
T Consensus 56 re~n~iTpenemKwe~i~p~-~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~ 129 (345)
T COG3693 56 RECNQITPENEMKWEAIEPE-RGRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEE 129 (345)
T ss_pred hhhcccccccccccccccCC-CCccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHH
Confidence 34443333344579999998 89999 55568999999999998543 2 224457999942 34777889999999
Q ss_pred HHHHHHHHhcCCCceEEEecCCcc
Q 015785 168 YADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 168 ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
+...|++||++.|..|-+.|||.-
T Consensus 130 hI~tV~~rYkg~~~sWDVVNE~vd 153 (345)
T COG3693 130 HIKTVVGRYKGSVASWDVVNEAVD 153 (345)
T ss_pred HHHHHHHhccCceeEEEecccccC
Confidence 999999999999999999999975
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.72 E-value=9.9e-05 Score=73.01 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec--------cCCCcHhHHhh
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALEDE 152 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~--------h~~~P~~l~~~ 152 (400)
.|++-++.||++|+|++-+-|.|.-.||. +|++|.++..=.+++|+.++++||.+++-.- .-.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 48889999999999999999999999999 8999999988899999999999999887543 13489999876
Q ss_pred hCCCC---CchhHHHHHHHHHHHHHHhcC-------CCceEEEecCCc
Q 015785 153 YGGWI---NRTIVKDFTAYADVCFRQFGD-------RVSYWTTVNEPN 190 (400)
Q Consensus 153 ~gg~~---~~~~~~~f~~ya~~~~~~~~d-------~v~~w~t~NEp~ 190 (400)
.+... ++...++-.+|.+.+++...+ -|-...+=||..
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 33322 334555666666666666644 244456666643
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.32 E-value=0.00043 Score=69.60 Aligned_cols=105 Identities=15% Similarity=0.342 Sum_probs=78.8
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec-c-----------CCCc
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLP 146 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h-----------~~~P 146 (400)
+.-.+.+++.+|++|++.+-+.+-|.-+|..+++++| +..|+++++.+++.|++..+.|. | ..+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 3467889999999999999999999999999899999 66799999999999999887663 3 3589
Q ss_pred HhHHhh-----------hCC--------CCCchhHHHHHHHHHHHHHHhcCCCceEEEecCC
Q 015785 147 QALEDE-----------YGG--------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEP 189 (400)
Q Consensus 147 ~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp 189 (400)
.|+.++ .|. |....+++.|.+|-+.+.++|.+.. -|+-|.
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I 150 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEI 150 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEE
Confidence 998753 122 3333348999999999999997764 344443
No 27
>PLN02161 beta-amylase
Probab=97.25 E-value=0.00082 Score=68.96 Aligned_cols=111 Identities=17% Similarity=0.281 Sum_probs=86.7
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec-cC-----------
Q 015785 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HF----------- 143 (400)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h~----------- 143 (400)
..+..-.+..++.+|.+|++.+-+.+-|--+|.++++++| +..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4556667889999999999999999999999999999999 66699999999999999777665 42
Q ss_pred CCcHhHHhh--------h---CC----------------CCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 144 DLPQALEDE--------Y---GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 144 ~~P~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
.+|.|+.+. | .| +..+.-++.|.+|-+-+.++|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 489998752 0 12 12233558899999999888888654 36666554
No 28
>PLN02803 beta-amylase
Probab=97.24 E-value=0.0011 Score=68.41 Aligned_cols=107 Identities=19% Similarity=0.355 Sum_probs=83.4
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec-c-----------CCCcH
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLPQ 147 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h-----------~~~P~ 147 (400)
.-.+..++.+|++|++.+-+.+-|--+|.++++++| |..|+++++.+++.|++..+.|. | ..+|.
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 446779999999999999999999999999999999 66699999999999999777665 3 24899
Q ss_pred hHHhh--------h---CC----------------CCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 148 ALEDE--------Y---GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 148 ~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
|+.+. | .| +..+.-++.|.+|-+-+.++|.+... -|+.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 98752 0 12 12333558889999888888877654 46666543
No 29
>PLN00197 beta-amylase; Provisional
Probab=97.20 E-value=0.0013 Score=68.07 Aligned_cols=107 Identities=20% Similarity=0.349 Sum_probs=84.0
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec-c-----------CCCcH
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLPQ 147 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h-----------~~~P~ 147 (400)
.-.+..++.+|.+|++.+-+.+-|--+|+++++++| |..|+++++.+++.|++..+.|. | ..+|.
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347889999999999999999999999999999999 66699999999999999777665 3 25999
Q ss_pred hHHhh--------h---CCC----------------CCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 148 ALEDE--------Y---GGW----------------INRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 148 ~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
|+.+. | .|. ..+.-++.|.+|-+-+.++|.+... -|+.|..+
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 98752 0 121 2233478999999998888888654 35666544
No 30
>PLN02801 beta-amylase
Probab=97.04 E-value=0.0032 Score=64.78 Aligned_cols=100 Identities=20% Similarity=0.423 Sum_probs=79.4
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec-c-----------CCC
Q 015785 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDL 145 (400)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h-----------~~~ 145 (400)
+-.-.+..++.+|++|++.+-+.+-|--+|.++++++| +..|+++++.+++.|++..+.|. | ..+
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 33447888999999999999999999999999899999 66699999999999999766654 3 358
Q ss_pred cHhHHhh--------h---CC----------------CCCchhHHHHHHHHHHHHHHhcCCC
Q 015785 146 PQALEDE--------Y---GG----------------WINRTIVKDFTAYADVCFRQFGDRV 180 (400)
Q Consensus 146 P~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v 180 (400)
|+|+.+. | .| +..+..++.|.+|-+-+.++|.+..
T Consensus 112 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 112 PQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9998752 0 12 1223356889999998888887754
No 31
>PLN03059 beta-galactosidase; Provisional
Probab=97.00 E-value=0.0017 Score=70.95 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=83.2
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec--------cCCCcHhHHh
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALED 151 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~--------h~~~P~~l~~ 151 (400)
+.|++=++.||++|+|++-.=|-|.--||. +|++|.+|..=..++|+.+.+.||-+|+-.- .-.+|.||.+
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 347888999999999999999999999999 8999999998899999999999999888643 3458999975
Q ss_pred hhCCCC----CchhHHHHHHHHHHHHHHhcC---------CCceEEEecCC
Q 015785 152 EYGGWI----NRTIVKDFTAYADVCFRQFGD---------RVSYWTTVNEP 189 (400)
Q Consensus 152 ~~gg~~----~~~~~~~f~~ya~~~~~~~~d---------~v~~w~t~NEp 189 (400)
. .|-. ++.+.++-.+|.+.+++..++ -|-...+=||-
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 4 4422 345556666666777666632 24445566774
No 32
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.94 E-value=0.0069 Score=59.12 Aligned_cols=102 Identities=13% Similarity=0.237 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCceeecc--cCCcc-----ccC-----CC------CCCChhhhHHHHHHHHHHHHcCCceeEeeccCC
Q 015785 83 KEDVKLMADTGLDAYRFSI--SWSRL-----IPN-----GR------GPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~W~ri-----~p~-----g~------g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~ 144 (400)
++-++..|+-|+|.+|+.+ .|.+. .|. .+ ..+|++-+++.+++|+.|.+.||++.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3446778999999999998 45443 111 01 1279999999999999999999999877654 2
Q ss_pred CcHhHHhhhCCCCC---chhHHHHHHHHHHHHHHhcCC-CceEEEecCC
Q 015785 145 LPQALEDEYGGWIN---RTIVKDFTAYADVCFRQFGDR-VSYWTTVNEP 189 (400)
Q Consensus 145 ~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~~d~-v~~w~t~NEp 189 (400)
.|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 121 11 45543 334788899999999999998 4778998885
No 33
>PLN02905 beta-amylase
Probab=96.94 E-value=0.0039 Score=65.36 Aligned_cols=102 Identities=14% Similarity=0.267 Sum_probs=80.8
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec-c-----------C
Q 015785 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------F 143 (400)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h-----------~ 143 (400)
..+..-.+..++.+|.+|++.+-+.+-|--+|.+++++|| |..|+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3455667889999999999999999999999999999999 66699999999999999777665 3 2
Q ss_pred CCcHhHHhh--------h---CCC----------------CCchhHHHHHHHHHHHHHHhcCCC
Q 015785 144 DLPQALEDE--------Y---GGW----------------INRTIVKDFTAYADVCFRQFGDRV 180 (400)
Q Consensus 144 ~~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~v 180 (400)
.+|.|+.+. | .|. ..+..++.|.+|-+-+.++|.+..
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 422 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFF 422 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 599998752 0 121 223456888888888888887753
No 34
>PLN02705 beta-amylase
Probab=96.86 E-value=0.0052 Score=64.27 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=78.9
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec-c-----------CCC
Q 015785 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDL 145 (400)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h-----------~~~ 145 (400)
+-.-.+..++.+|.+|++.+-+.+-|--+|.+++++|| |..|+++++.+++.|++..+.|. | ..+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 33457888999999999999999999999999899999 66699999999999999776654 3 258
Q ss_pred cHhHHhh--------h---CCC----------------CCchhHHHHHHHHHHHHHHhcCCC
Q 015785 146 PQALEDE--------Y---GGW----------------INRTIVKDFTAYADVCFRQFGDRV 180 (400)
Q Consensus 146 P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~v 180 (400)
|.|+.+. | .|. ..+.-++.|.+|.+-+.++|.+..
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl 404 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF 404 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9998752 0 121 223456888999988888887753
No 35
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.77 E-value=0.0095 Score=59.81 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=48.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhh---CC-----CCCchhHHHHHHHHHHHHHHhcC---C
Q 015785 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY---GG-----WINRTIVKDFTAYADVCFRQFGD---R 179 (400)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~---gg-----~~~~~~~~~f~~ya~~~~~~~~d---~ 179 (400)
+|.+|..+=+-=+-++++++++|+..++. +-+..|.|+.... |+ =+.++..++|++|-..|+++|.. .
T Consensus 95 dg~yDW~~D~gQrwfL~~Ak~rGV~~f~a-FSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~ 173 (384)
T PF14587_consen 95 DGSYDWDADAGQRWFLKAAKERGVNIFEA-FSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGIN 173 (384)
T ss_dssp TS-B-TTSSHHHHHHHHHHHHTT---EEE-E-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--
T ss_pred CCCcCCCCCHHHHHHHHHHHHcCCCeEEE-eecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCc
Confidence 57777654334455889999999998874 5567777774320 11 14567889999999999999944 5
Q ss_pred CceEEEecCCcc
Q 015785 180 VSYWTTVNEPNA 191 (400)
Q Consensus 180 v~~w~t~NEp~~ 191 (400)
+++-.++|||+.
T Consensus 174 f~~IsP~NEP~~ 185 (384)
T PF14587_consen 174 FDYISPFNEPQW 185 (384)
T ss_dssp EEEEE--S-TTS
T ss_pred cceeCCcCCCCC
Confidence 888999999984
No 36
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.38 E-value=0.042 Score=52.08 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCCEEEecCCCC
Q 015785 370 LGLQRVLEHFKQLYGNPPMYIHENGSL 396 (400)
Q Consensus 370 ~GL~~~L~~i~~rY~~~PI~ITENG~g 396 (400)
.++...|..++++|+ +||.|||-|+.
T Consensus 151 ~~~~~~i~~~~~~~~-kPIWITEf~~~ 176 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYG-KPIWITEFGCW 176 (239)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEeeccc
Confidence 578999999999996 99999999874
No 37
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.07 E-value=0.033 Score=54.33 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=61.5
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhC---
Q 015785 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYG--- 154 (400)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~g--- 154 (400)
..+.++.|+++||++|+|++|++. .|. + .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCccc
Confidence 356789999999999999999953 233 1 356678888999988765431111111 001
Q ss_pred -CCCCchhHHHHHHHHHHHHHHhcCC--CceEEEecCC
Q 015785 155 -GWINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEP 189 (400)
Q Consensus 155 -g~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp 189 (400)
--.+++..+.+.+-++.+++++..+ |-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0125678888888999999999886 7779999998
No 38
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=95.91 E-value=0.26 Score=48.25 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeecc
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h 142 (400)
-.+.|+.+||+||+|++|+=- |-|. .| .|+..+.|.++||-++++|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~----vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYS----VDPS----KN------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEEE----eCCC----CC------HHHHHHHHHhCCCEEEEecCC
Confidence 578999999999999999742 3355 13 577888999999999999964
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.63 E-value=0.069 Score=47.84 Aligned_cols=101 Identities=17% Similarity=0.327 Sum_probs=67.7
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccc-----cCC--CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhh
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLI-----PNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY 153 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----p~g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~ 153 (400)
+|+++++.|+++|++++=+. |+... |.. ++.+.....+.++.+++++.++||++++.|+. -|.|.. +
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~-~- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWD-Q- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhh-c-
Confidence 58999999999999998544 44432 321 11233344678999999999999999999974 345554 2
Q ss_pred CCCCCch-hHHHHHHHHHHHHHHhcCC--CceEEEecCCc
Q 015785 154 GGWINRT-IVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (400)
Q Consensus 154 gg~~~~~-~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (400)
.+.+ -++.=..-++.+.++||.+ +..|-+=.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1111 2233345777888899885 45576666665
No 40
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.56 E-value=0.048 Score=57.82 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=84.1
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec--------cCCCcHhHHhh
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALEDE 152 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~--------h~~~P~~l~~~ 152 (400)
.|++=++.+|++|+|++-.=+-|.-.||. +|++|.+|..=..++|..+.++|+-+++-+- |-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 47888999999999999999999999999 8999999977778889999999998777543 45689888654
Q ss_pred hCCC----CCchhHHHHHHHHHHHHHHhc-------CCCceEEEecCCc
Q 015785 153 YGGW----INRTIVKDFTAYADVCFRQFG-------DRVSYWTTVNEPN 190 (400)
Q Consensus 153 ~gg~----~~~~~~~~f~~ya~~~~~~~~-------d~v~~w~t~NEp~ 190 (400)
.|- .|+.+..+..+|.+.++...+ +-|-.-.+=||-.
T Consensus 129 -pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 -PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred -CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 342 366788888889988887443 2244445666643
No 41
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.33 E-value=0.24 Score=49.97 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=73.3
Q ss_pred HHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCC--CchhHHHHH
Q 015785 89 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI--NRTIVKDFT 166 (400)
Q Consensus 89 ~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~--~~~~~~~f~ 166 (400)
-+|+|++.+|.---|.-++.+ =-++ +.++++++|.+.+.|+.-+.+-.||+.+.-...+|.+=. .....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 368899999988888833322 2345 778999999999999555556667777655444444422 224789999
Q ss_pred HHHHHHHHHhcCC-CceE--EEecCCccccc
Q 015785 167 AYADVCFRQFGDR-VSYW--TTVNEPNAFAN 194 (400)
Q Consensus 167 ~ya~~~~~~~~d~-v~~w--~t~NEp~~~~~ 194 (400)
++++.|+.++|-+ |.-| ..+||||..+-
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 9999999999964 4445 79999998643
No 42
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=92.33 E-value=0.97 Score=44.07 Aligned_cols=87 Identities=22% Similarity=0.406 Sum_probs=61.8
Q ss_pred ccCcHHHHHHHHHcCCCceeecc---cCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCC
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSI---SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si---~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg 155 (400)
..||.+-.++++++|+|++-+.= .-..+. .+-++.+.++-+.++.+||++.+++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt--------~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLT--------PEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGS--------TTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcC--------HHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 56889999999999999987641 222222 23377888999999999999999986 7778654 66
Q ss_pred C-----CCchhHHHHHHHHHHHHHHhcC
Q 015785 156 W-----INRTIVKDFTAYADVCFRQFGD 178 (400)
Q Consensus 156 ~-----~~~~~~~~f~~ya~~~~~~~~d 178 (400)
. ++++++..|.+=++.+.++..|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 4678999999999999988855
No 43
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=90.98 E-value=0.71 Score=52.84 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=62.4
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec---cCCCcHhHHhhhC
Q 015785 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLPQALEDEYG 154 (400)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~---h~~~P~~l~~~~g 154 (400)
....+++|+++||++|+|++|+| ..|. + ..+.+.|=+.||-++--.. |--.|. ..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~-------p~fydlcDe~GilV~dE~~~e~hg~~~~---~~-- 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPN-----H-------PLWYELCDRYGLYVVDEANIETHGMVPM---NR-- 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCC-----C-------HHHHHHHHHcCCEEEEecCccccCCccc---cC--
Confidence 34568999999999999999996 2343 1 2445778889998776542 111110 00
Q ss_pred CCCCchhHHHHHHHHHHHHHHhcCC--CceEEEecCCc
Q 015785 155 GWINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (400)
Q Consensus 155 g~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (400)
...+++..+.+.+=++.+++|.+.+ |-.|...||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 0124556677777788889999887 67899999975
No 44
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.27 E-value=0.13 Score=52.67 Aligned_cols=109 Identities=16% Similarity=0.121 Sum_probs=79.8
Q ss_pred cHHHHHHHHHcCCCceeecccC-CccccCCCCCCChhh-hHHHHHHHHHHHHcCCceeEeec----cCCCcHhHHhhhCC
Q 015785 82 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKG-LQYYNNLINELISYGIQPHVTLH----HFDLPQALEDEYGG 155 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W-~ri~p~g~g~~n~~~-~~~y~~~i~~l~~~Gi~p~~tL~----h~~~P~~l~~~~gg 155 (400)
.+.|++.++.+|++..|++|-= ..+ -+..|..|.+. +.+.+.+++.+...+|++++||. |+.--.|-..=.|+
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4578899999999999999633 332 23357778776 99999999999999999999976 33322221100011
Q ss_pred ------CCCchhHHHHHHHHHHHHHHhcCC--CceEEEecCCcc
Q 015785 156 ------WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (400)
Q Consensus 156 ------~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 191 (400)
...++....|.+|++.+++.|+.. +--|+.-|||-+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 234567888999999999999886 455999999765
No 45
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=89.84 E-value=1 Score=51.65 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=61.7
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee----ccCCCcHhHHhhhC
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHFDLPQALEDEYG 154 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL----~h~~~P~~l~~~~g 154 (400)
...+++|+++||++|+|++|+|. .|.. ..+.+.|=+.||-++--. |.|..... +
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~~----~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPND------------PRFYELCDIYGLFVMAETDVESHGFANVGD----I- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCCC------------HHHHHHHHHCCCEEEECCcccccCcccccc----c-
Confidence 46789999999999999999962 4541 245678888999877643 11211100 0
Q ss_pred CC--CCchhHHHHHHHHHHHHHHhcCC--CceEEEecCCc
Q 015785 155 GW--INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (400)
Q Consensus 155 g~--~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (400)
.+ ..+...+.|.+=++.+++|.+.+ |-.|..-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 01 23345567777788899999887 67799999973
No 46
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=87.84 E-value=13 Score=36.74 Aligned_cols=98 Identities=17% Similarity=0.312 Sum_probs=64.8
Q ss_pred cCcHHHHHHHHHcCCCceeecccC-------CccccCC---CCCC-ChhhhHHHHHHHHHHHHcCCceeEeec-c-----
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISW-------SRLIPNG---RGPV-NPKGLQYYNNLINELISYGIQPHVTLH-H----- 142 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W-------~ri~p~g---~g~~-n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h----- 142 (400)
...++-++.++++|+|++=+.+.+ |.++|.. .|.. ...+++.+..+|++++++||++..-+. .
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345677899999999988776644 2333321 0111 113578899999999999999875441 1
Q ss_pred -----CCCcHhHHhh-------h----CC--CCC---chhHHHHHHHHHHHHHHhc
Q 015785 143 -----FDLPQALEDE-------Y----GG--WIN---RTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 143 -----~~~P~~l~~~-------~----gg--~~~---~~~~~~f~~ya~~~~~~~~ 177 (400)
-..|.|+..+ + ++ |.| |++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1236665421 1 22 554 5788899999999999994
No 47
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=87.33 E-value=2.4 Score=47.16 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=65.1
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCC
Q 015785 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (400)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg 155 (400)
+-.+..+.+|+++||++|+|++|.| -.|.. .++.+.|=+.||=++-...+.. +++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~~--------~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIET--------HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchhh--------cCC
Confidence 3345558999999999999999999 44551 3455677788998886543211 233
Q ss_pred CCCchhHHHHHHHHHHHHHHhcCC--CceEEEecCCc
Q 015785 156 WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (400)
Q Consensus 156 ~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 190 (400)
...++..+...+=+++.++|-+.+ |-.|..-||..
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 455666677777788888888876 67799999965
No 48
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=86.56 E-value=1.1 Score=35.41 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=29.7
Q ss_pred HHHHhcC--CCceEEEecC-CccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCe
Q 015785 172 CFRQFGD--RVSYWTTVNE-PNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGY 248 (400)
Q Consensus 172 ~~~~~~d--~v~~w~t~NE-p~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~ 248 (400)
++++||+ +|.+|.++|| |+... ..+|. .... ...+. +..-+.++.+.+|+..|...
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~------~~~~~-~~~~-----------~~~~~---~~~~l~~~~~~iR~~dP~~p 59 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWA------DGYPA-EWGD-----------PKAEA---YAEWLKEAFRWIRAVDPSQP 59 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-------TT-TT--TT------------TTSHH---HHHHHHHHHHHHHTT-TTS-
T ss_pred CchhhcCCCCEEEEEeecCCCCccc------ccccc-cccc-----------hhHHH---HHHHHHHHHHHHHHhCCCCc
Confidence 4567766 7999999999 66211 11222 1110 00112 22334567888999999877
Q ss_pred EEEE
Q 015785 249 IGVN 252 (400)
Q Consensus 249 IG~~ 252 (400)
|+..
T Consensus 60 vt~g 63 (88)
T PF12876_consen 60 VTSG 63 (88)
T ss_dssp EE--
T ss_pred EEee
Confidence 7543
No 49
>smart00642 Aamy Alpha-amylase domain.
Probab=84.51 E-value=2.5 Score=37.73 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=43.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccc---------cCCCCCCChh--hhHHHHHHHHHHHHcCCceeEeec
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLI---------PNGRGPVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~---------p~g~g~~n~~--~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
+....+-++.++++|++++-++--+.... |..--.+|+. ..+-++++|++|+++||++++++-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44456667789999999998876544442 1100112221 256689999999999999999874
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=83.99 E-value=6.3 Score=33.88 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCceeeccc--CCc-cccCCCCC--CChhhhHHHHHHHHHHHHcCCceeEeecc-CC------CcHhHHh
Q 015785 84 EDVKLMADTGLDAYRFSIS--WSR-LIPNGRGP--VNPKGLQYYNNLINELISYGIQPHVTLHH-FD------LPQALED 151 (400)
Q Consensus 84 eDi~l~~~lG~~~~R~si~--W~r-i~p~g~g~--~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h-~~------~P~~l~~ 151 (400)
+=++.+|++|+|++-+... +-- ..|..-|. ...+ -+.+.++|++|+++||++++-+.+ +| .|.|+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 3468899999999999332 111 11332222 2222 578999999999999999986543 33 5888763
Q ss_pred hhC------------CCC----CchhHHHHHHHHHHHHHHh
Q 015785 152 EYG------------GWI----NRTIVKDFTAYADVCFRQF 176 (400)
Q Consensus 152 ~~g------------g~~----~~~~~~~f~~ya~~~~~~~ 176 (400)
.-. ||. |....+....-.+.++++|
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 222 232 3445566666667777777
No 51
>PRK09936 hypothetical protein; Provisional
Probab=80.36 E-value=18 Score=35.35 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=45.6
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHh
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~ 151 (400)
|++=++.++.+|++++ =+.|++.--+.-|.- + .+..+.++.+.+.||++.|.|+ +| |.|.+.
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~--~--g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADFGGQ--R--GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCcccc--h--HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 6777889999999986 357988821101222 2 4688999999999999999997 56 666653
No 52
>PLN02361 alpha-amylase
Probab=76.83 E-value=4.3 Score=41.53 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=46.6
Q ss_pred CcccCcHHHHHHHHHcCCCceeecccCCccccCCCCC-----CChh--hhHHHHHHHHHHHHcCCceeEee
Q 015785 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~-----~n~~--~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
.+|....+-++-+++||++++=++-......+.|-.. +|.. ..+-++++|++|+++||++++++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 4788889999999999999998876544333332111 1211 24558999999999999999975
No 53
>PLN00196 alpha-amylase; Provisional
Probab=74.28 E-value=5 Score=41.46 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=43.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCC-----CCh---hhhHHHHHHHHHHHHcCCceeEee
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNP---KGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~-----~n~---~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
|....+.+.-+++||++++=++=......+.|-.. +|. -.-+=++++|++++++||++|++.
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44457788999999999998886544433333211 221 113458999999999999999984
No 54
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=74.02 E-value=14 Score=35.92 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=70.6
Q ss_pred CccceeecccCCcCCCCCcCCCcccCcHHHHHHHHHcCCCceeecccCCccccCCC-CCCChhhhHHHHHHHHHHHHcCC
Q 015785 56 PSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGI 134 (400)
Q Consensus 56 ~s~Wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~~Gi 134 (400)
.+.|+-|...... ..+..+.-.+.++++-|+..+++|+..+=+.-.|+.-..... .......-....++++..+++|+
T Consensus 9 k~~W~Ww~~~~~~-~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgV 87 (273)
T PF10566_consen 9 KAAWSWWSMHNGK-GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGV 87 (273)
T ss_dssp EEEECTCCCCTTS-SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-
T ss_pred eEEEeecccCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 3667766543111 112234456788999999999999999999999997332211 11111112347899999999999
Q ss_pred ceeEeeccCC------CcHhHH---hhh---C------CC---CCchhHHHHHHHHHHHHHH
Q 015785 135 QPHVTLHHFD------LPQALE---DEY---G------GW---INRTIVKDFTAYADVCFRQ 175 (400)
Q Consensus 135 ~p~~tL~h~~------~P~~l~---~~~---g------g~---~~~~~~~~f~~ya~~~~~~ 175 (400)
.+++-.+|-+ +=..+. ++| | || .+...++.+.+.++.++++
T Consensus 88 gi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 88 GIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999998765 211111 112 1 23 3446778888888887764
No 55
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=73.55 E-value=6.4 Score=37.29 Aligned_cols=114 Identities=12% Similarity=0.182 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHcCCceeEeeccCC--------------CcHhHHhh----------------hCC----CCCch----
Q 015785 119 LQYYNNLINELISYGIQPHVTLHHFD--------------LPQALEDE----------------YGG----WINRT---- 160 (400)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~~tL~h~~--------------~P~~l~~~----------------~gg----~~~~~---- 160 (400)
-+.++.+|+.-+++|.++|+||.=.+ .|.|-..+ .+| -.+|+
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 46789999999999999999986211 12111000 011 11332
Q ss_pred --hHHHHHHHHHHHHHHhcCC-----CceEEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHH
Q 015785 161 --IVKDFTAYADVCFRQFGDR-----VSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAH 233 (400)
Q Consensus 161 --~~~~f~~ya~~~~~~~~d~-----v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAh 233 (400)
..+.| +..+..+||.. |++|..=|||.+-. +.|+.-... ...+.-+....++.
T Consensus 103 ~~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~------~TH~dVHP~-----------~~t~~El~~r~i~~ 162 (239)
T PF12891_consen 103 PVYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWH------STHRDVHPE-----------PVTYDELRDRSIEY 162 (239)
T ss_dssp EEEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHH------HHTTTT--S--------------HHHHHHHHHHH
T ss_pred HhHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhc------ccccccCCC-----------CCCHHHHHHHHHHH
Confidence 44555 66666777665 99999999998632 122211000 11234444555666
Q ss_pred HHHHHHHHHhcCCCeE-EEEeeC
Q 015785 234 ASVARLYRKKYQRGYI-GVNIFA 255 (400)
Q Consensus 234 a~a~~~~r~~~~~~~I-G~~~~~ 255 (400)
|+|+ |+..|+++| |.+.-.
T Consensus 163 Akai---K~~DP~a~v~GP~~wg 182 (239)
T PF12891_consen 163 AKAI---KAADPDAKVFGPVEWG 182 (239)
T ss_dssp HHHH---HHH-TTSEEEEEEE-S
T ss_pred HHHH---HhhCCCCeEeechhhc
Confidence 6554 557898875 766443
No 56
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=71.47 E-value=30 Score=34.50 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=63.3
Q ss_pred CCcCCCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHh
Q 015785 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (400)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~ 151 (400)
+-+|.=||+ |+.-+..++. |++.+|+. +|.+-. -+..+.+++.++++|+-.=+...|-.++..+.+
T Consensus 74 PlVADIHFd-~~lAl~a~~~-g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAALAMAK-GVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHHHHHh-ccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 445777776 6666665554 99999963 344421 357899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHH
Q 015785 152 EYGGWINRTIVKDFTAYADVC 172 (400)
Q Consensus 152 ~~gg~~~~~~~~~f~~ya~~~ 172 (400)
+||+=+.+..++.-.++++.+
T Consensus 140 kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 987644444555555555543
No 57
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.25 E-value=20 Score=35.11 Aligned_cols=105 Identities=17% Similarity=0.261 Sum_probs=70.6
Q ss_pred cHHHHHHHHHcCC--CceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC---cHhHH------
Q 015785 82 YKEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL---PQALE------ 150 (400)
Q Consensus 82 ~~eDi~l~~~lG~--~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~---P~~l~------ 150 (400)
..+-++.+++.|+ +.+=+.+.|..-. |.=.+|.+.+.-..++++.|++.|+++++.+.-+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 3555677888885 4666666785432 233567666777889999999999999987653221 11110
Q ss_pred ---hhhC----------C------CCCchhHHHHHHHHHHHHHHhcCCCce-EEEecCCc
Q 015785 151 ---DEYG----------G------WINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPN 190 (400)
Q Consensus 151 ---~~~g----------g------~~~~~~~~~f~~ya~~~~~~~~d~v~~-w~t~NEp~ 190 (400)
++.| | ++||+..+.|.+..+.+....| |++ |.=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG--IDSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC--CcEEEeCCCCcc
Confidence 0001 1 6788999999888888886664 444 68899997
No 58
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=71.14 E-value=16 Score=36.42 Aligned_cols=70 Identities=17% Similarity=0.460 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhh--------CCC--------CCchhHHHHHHHHHHHH----HHhcC
Q 015785 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGW--------INRTIVKDFTAYADVCF----RQFGD 178 (400)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~--------gg~--------~~~~~~~~f~~ya~~~~----~~~~d 178 (400)
.+.=+++++++++.||+|++--+---.|..+.+++ +.| +.| .-+.|.+.++... +.||
T Consensus 94 ~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG- 171 (333)
T PF05089_consen 94 AELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG- 171 (333)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-
Confidence 45568999999999999999877666898887765 223 233 2367777666554 6677
Q ss_pred CCceE--EEecCCc
Q 015785 179 RVSYW--TTVNEPN 190 (400)
Q Consensus 179 ~v~~w--~t~NEp~ 190 (400)
...++ -+|||-.
T Consensus 172 ~~~~Y~~D~FnE~~ 185 (333)
T PF05089_consen 172 TDHIYAADPFNEGG 185 (333)
T ss_dssp --SEEE--TTTTS-
T ss_pred CCceeCCCccCCCC
Confidence 34444 3888843
No 59
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=70.19 E-value=7.8 Score=36.82 Aligned_cols=58 Identities=17% Similarity=0.342 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCC-------CCChh--hhHHHHHHHHHHHHcCCceeEeec
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g-------~~n~~--~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
.+-++.+|+||++++-++=-+..-. ...| .+|++ ..+=++++|++|+++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~-~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPN-GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSS-STTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccccc-ccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4557889999999999885443110 1011 12222 366789999999999999999874
No 60
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=70.17 E-value=16 Score=38.13 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=42.2
Q ss_pred cccCcHHH-----HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc
Q 015785 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (400)
Q Consensus 78 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P 146 (400)
.|..|.+| ++...+.|++.+|+..+-+.+ +-..+.++.+++.|+.+..++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46678888 899999999999999865542 335677788888888888777653335
No 61
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=70.03 E-value=14 Score=35.79 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=61.7
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCc
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~ 159 (400)
+-+.|++.+++.|++.+++.++=|...-.- -+.--++.++...++++.+++.|+++.+++-+|..|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 346799999999999999998654433220 1333467799999999999999999999998877663 1
Q ss_pred hhHHHHHHHHHHHHH
Q 015785 160 TIVKDFTAYADVCFR 174 (400)
Q Consensus 160 ~~~~~f~~ya~~~~~ 174 (400)
...+.+.++++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~ 158 (280)
T cd07945 144 DSPDYVFQLVDFLSD 158 (280)
T ss_pred CCHHHHHHHHHHHHH
Confidence 235677777777654
No 62
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=68.87 E-value=28 Score=37.14 Aligned_cols=92 Identities=18% Similarity=0.318 Sum_probs=55.9
Q ss_pred ccCcHHHHHHHHHcCCCceeecc--c------C-------CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec--
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSI--S------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-- 141 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si--~------W-------~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-- 141 (400)
+.-..+-++.+|+||++++-+.= + | -.+.|. -| ..+-++++|++|.++||++|+++-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G-----~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YG-----GPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cC-----CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 34455668999999999987652 1 2 111121 12 245689999999999999999854
Q ss_pred cCC---------CcHhHHhh-hCCC------CCc---hhHHHHHHHHHHHHHHhc
Q 015785 142 HFD---------LPQALEDE-YGGW------INR---TIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 142 h~~---------~P~~l~~~-~gg~------~~~---~~~~~f~~ya~~~~~~~~ 177 (400)
|.. .| |+... ..+| .++ .+.+.+.+-++.-++.|+
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 543 12 22211 1233 234 666666766666666653
No 63
>PRK05402 glycogen branching enzyme; Provisional
Probab=68.83 E-value=26 Score=38.74 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=57.9
Q ss_pred cHHHH-HHHHHcCCCceeeccc--------C-------CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee--ccC
Q 015785 82 YKEDV-KLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HHF 143 (400)
Q Consensus 82 ~~eDi-~l~~~lG~~~~R~si~--------W-------~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL--~h~ 143 (400)
..+.+ +.+|+||++++=+.=- | -.+.|. -|. .+=++++|++|.++||++|+++ .|+
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FGT-----PDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 34453 7789999999876532 2 112222 222 4458999999999999999985 355
Q ss_pred CCc-----------HhHHh-----hhCCC-------CCchhHHHHHHHHHHHHHHhcCCCceE
Q 015785 144 DLP-----------QALED-----EYGGW-------INRTIVKDFTAYADVCFRQFGDRVSYW 183 (400)
Q Consensus 144 ~~P-----------~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~~d~v~~w 183 (400)
... .+... .+..| .++++.+.+.+-++.-+++|+ |+.|
T Consensus 341 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~ 401 (726)
T PRK05402 341 PKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGL 401 (726)
T ss_pred CCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 311 11000 01123 466777888888888888774 4444
No 64
>PRK12313 glycogen branching enzyme; Provisional
Probab=68.45 E-value=24 Score=38.30 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=57.9
Q ss_pred ccCcHHH-HHHHHHcCCCceeeccc--------C-------CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee--
Q 015785 79 YHKYKED-VKLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (400)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~si~--------W-------~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL-- 140 (400)
|.-..+. ++.+|+||++++=+.=- | -.+.|. -|. .+=++++|++|.++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YGT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 3334556 48999999999976531 2 112222 222 4458999999999999999984
Q ss_pred ccCCCcH----hHH--------h---h-hCCC-------CCchhHHHHHHHHHHHHHHhc
Q 015785 141 HHFDLPQ----ALE--------D---E-YGGW-------INRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 141 ~h~~~P~----~l~--------~---~-~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (400)
.|+.... ++. + . +.+| .++++.+.+.+-++.-++.|+
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3543111 110 0 0 0123 367777888888888888774
No 65
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.37 E-value=89 Score=30.72 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCC--CceeecccCCccccC----CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccC---CCcHhHH--h
Q 015785 83 KEDVKLMADTGL--DAYRFSISWSRLIPN----GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALE--D 151 (400)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~p~----g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~---~~P~~l~--~ 151 (400)
.+-++.+++.|+ +++=+.+.|...... +.=.+|++.+.--+++|+.|+++|++.++.++-+ +.|..-+ +
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 344555666554 455566667543321 1112455555556789999999999999988644 2333210 0
Q ss_pred h-h-------------------C---CCCCchhHHHHHHHHHHHHHHhcCCCce-EEEecCCccc
Q 015785 152 E-Y-------------------G---GWINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (400)
Q Consensus 152 ~-~-------------------g---g~~~~~~~~~f~~ya~~~~~~~~d~v~~-w~t~NEp~~~ 192 (400)
+ | + .++||+..+.|.+..+.+ +..-|+. |.=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 0 1 256888888887766654 2233544 7899999754
No 66
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.45 E-value=20 Score=34.12 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=55.9
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccC-CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCch
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~ 160 (400)
-.+|++...+.|++.+|+.++.|.+.-. --+.-.+++++...+.++.+++.|+++.+++.. .+. .
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~---~ 136 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------ASR---A 136 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CCC---C
Confidence 3789999999999999999988766421 013334567889999999999999988765521 222 2
Q ss_pred hHHHHHHHHHHHHH
Q 015785 161 IVKDFTAYADVCFR 174 (400)
Q Consensus 161 ~~~~f~~ya~~~~~ 174 (400)
..+.+.+.++.+.+
T Consensus 137 ~~~~~~~~~~~~~~ 150 (259)
T cd07939 137 DPDFLIEFAEVAQE 150 (259)
T ss_pred CHHHHHHHHHHHHH
Confidence 35666666666644
No 67
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=66.12 E-value=21 Score=38.49 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=57.3
Q ss_pred cccCcHHH-----HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc----Hh
Q 015785 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QA 148 (400)
Q Consensus 78 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P----~~ 148 (400)
.|.+|.+| ++..++.|++.+|+....+.+ +-....|+.+++.|.....++.+-+.| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 36666666 999999999999999654433 335566777777777665555432233 21
Q ss_pred HHhh------h----------CCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 149 LEDE------Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 149 l~~~------~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
+.+. . .|-..| ....+.++.+-+++ +..-...+.|-..+
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P---~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gl 211 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKP---YAAYELVSRIKKRV-DVPLHLHCHATTGL 211 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCH---HHHHHHHHHHHHhc-CCeEEEEECCCCch
Confidence 1110 0 233443 45555566666666 32234678887765
No 68
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=65.98 E-value=1.4e+02 Score=29.45 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=33.2
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC
Q 015785 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (400)
Q Consensus 105 ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~ 144 (400)
+..|...+-++.+-+..++++.+.++++|-+.++=|+|..
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 4445544567888899999999999999999999999953
No 69
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=65.56 E-value=12 Score=41.04 Aligned_cols=55 Identities=18% Similarity=0.387 Sum_probs=39.8
Q ss_pred HHHHHHcCCCceee----cccCCccccC-CC---------------CCC--Ch---hhhHHHHHHHHHHHHcCCceeEee
Q 015785 86 VKLMADTGLDAYRF----SISWSRLIPN-GR---------------GPV--NP---KGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 86 i~l~~~lG~~~~R~----si~W~ri~p~-g~---------------g~~--n~---~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
|+.+|+||++++.+ ++.+.+...+ |. |.+ +. ..++=++++|++|.++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999984 3444444322 10 111 33 258889999999999999999985
No 70
>PRK03705 glycogen debranching enzyme; Provisional
Probab=64.08 E-value=14 Score=40.47 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=37.3
Q ss_pred HHHHHHcCCCceeecc--c---------------C-------CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 86 VKLMADTGLDAYRFSI--S---------------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 86 i~l~~~lG~~~~R~si--~---------------W-------~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
++-+|+||++++=+.= + | -.+.|. -|.-....++-++++|++|.++||++|+++-
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 8899999999987642 1 1 122222 1211112356799999999999999999854
No 71
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=63.26 E-value=22 Score=33.42 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchh
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~ 161 (400)
++|++.+++.|++.+|++++-+...-.- .+.=.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999866421110 011122357888999999999999999998543322 133
Q ss_pred HHHHHHHHHHHHH
Q 015785 162 VKDFTAYADVCFR 174 (400)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (400)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666543
No 72
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.13 E-value=29 Score=33.40 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhH
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~ 162 (400)
.+|++...+.|++.+|+++..+ .++...+.++.+++.|+++.+++.+-. +-..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~--------------~~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS--------------GYSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec--------------CCCH
Confidence 5889999999999999987432 367788999999999999999886521 1235
Q ss_pred HHHHHHHHHHHH
Q 015785 163 KDFTAYADVCFR 174 (400)
Q Consensus 163 ~~f~~ya~~~~~ 174 (400)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 677777777654
No 73
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=63.09 E-value=43 Score=32.79 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=74.1
Q ss_pred HHHHHcCCCceeeccc--CCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHH
Q 015785 87 KLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (400)
Q Consensus 87 ~l~~~lG~~~~R~si~--W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~ 164 (400)
+.+++.|++++-+++- -....|.-.|......-......|..|+++|.+++|++--+.-... -.+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 5677889999887753 2222332111111011234567899999999999999843331110 013467888
Q ss_pred HHHHHHHHHHHhcC-CCce-EEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 015785 165 FTAYADVCFRQFGD-RVSY-WTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRK 242 (400)
Q Consensus 165 f~~ya~~~~~~~~d-~v~~-w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~ 242 (400)
|++....+.++|+= .|++ |+- |+..+ + .+..+ .++|++.+++
T Consensus 92 ~~~a~~~~i~~y~~dgiDfDiE~------------------~~~~d-----------~---~~~~~----~~~al~~Lq~ 135 (294)
T cd06543 92 LAAAYQKVIDAYGLTHLDFDIEG------------------GALTD-----------T---AAIDR----RAQALALLQK 135 (294)
T ss_pred HHHHHHHHHHHhCCCeEEEeccC------------------Ccccc-----------c---hhHHH----HHHHHHHHHH
Confidence 88888888888863 2322 110 11110 0 11122 3566788888
Q ss_pred hcCCCeEEEEeeCCc
Q 015785 243 KYQRGYIGVNIFAFG 257 (400)
Q Consensus 243 ~~~~~~IG~~~~~~~ 257 (400)
.+|+-+|.+++...+
T Consensus 136 ~~p~l~vs~Tlp~~p 150 (294)
T cd06543 136 EYPDLKISFTLPVLP 150 (294)
T ss_pred HCCCcEEEEecCCCC
Confidence 888888988876554
No 74
>PLN02784 alpha-amylase
Probab=62.93 E-value=14 Score=41.38 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=47.5
Q ss_pred CcccCcHHHHHHHHHcCCCceeecccCCccccCCCCC-----CChh--hhHHHHHHHHHHHHcCCceeEee
Q 015785 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~-----~n~~--~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
.+|....+.++.+++||++++=++=......+.|-.. +|.. ..+-++.+|++|+++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5688899999999999999998876544443333221 1221 24568999999999999999984
No 75
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=62.62 E-value=16 Score=36.79 Aligned_cols=94 Identities=14% Similarity=0.244 Sum_probs=57.1
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCC---CCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHhHHhhhCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~ 157 (400)
-+|.++.++++|++.+-+++ .-+-++- -|+.. ..+-..+.|+.+++.|+..+ +++- +++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 46889999999999554444 3333321 13221 25567789999999999744 5543 55553
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCceEEEecCCccc
Q 015785 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (400)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (400)
++.+.|.+-.+.+.+.=-++|..+...-+|+..
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 234666666666654333556665544577643
No 76
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=62.60 E-value=16 Score=39.13 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=41.4
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCC--------CChh--hhHHHHHHHHHHHHcCCceeEeec
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP--------VNPK--GLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~--------~n~~--~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
+.-..+.++.+++||++++=++=-+.. |..... +|+. ..+-++++|++++++||++|+++-
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 444568889999999999977643311 110111 1221 245689999999999999999864
No 77
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=62.40 E-value=1.6e+02 Score=28.88 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=46.8
Q ss_pred CChhhhHHHHHHHHHHHHcCCceeEeeccCC---CcHhHHhh---h--------------------CCCCCchhHHHHHH
Q 015785 114 VNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALEDE---Y--------------------GGWINRTIVKDFTA 167 (400)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~---~P~~l~~~---~--------------------gg~~~~~~~~~f~~ 167 (400)
+|.+.+.--.++|+.|+++|+++++.++-+- .+.+-+-+ | -.|+||+..+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 4555555678999999999999988764321 12111000 0 11567777777665
Q ss_pred HHHHHHHHhcCCCc-eEEEecCCcccc
Q 015785 168 YADVCFRQFGDRVS-YWTTVNEPNAFA 193 (400)
Q Consensus 168 ya~~~~~~~~d~v~-~w~t~NEp~~~~ 193 (400)
..+..+... -|+ +|.=+|||..+.
T Consensus 140 ~~~~~~~~~--Gvdg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDK--GVDAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcC--CCcEEEecCCCCCccC
Confidence 544433333 344 478999998643
No 78
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=62.24 E-value=42 Score=32.34 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=50.1
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchh
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~ 161 (400)
-++|++...+.|++.+|+++..+. ++...+.++.+++.|+++.+++.--+ + ++-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 478999999999999999875443 45678899999999999887663111 1 2234
Q ss_pred HHHHHHHHHHHHHH
Q 015785 162 VKDFTAYADVCFRQ 175 (400)
Q Consensus 162 ~~~f~~ya~~~~~~ 175 (400)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777776553
No 79
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=61.71 E-value=44 Score=32.56 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=67.8
Q ss_pred cHHHHHHHHHcC--CCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC---CcHhHHh--h--
Q 015785 82 YKEDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALED--E-- 152 (400)
Q Consensus 82 ~~eDi~l~~~lG--~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~---~P~~l~~--~-- 152 (400)
..|-++.+++.| ++++=+.+.|.+-.-.+.=.+|++.+--.+++|+.|+++|+++++.++-+- .|..-+. +
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 466788889999 556777778875322112345666666778999999999999988776332 2221110 0
Q ss_pred ---------h--------CC---CCCchhHHHHHHHHHHHHHHhcCCCce-EEEecCCc
Q 015785 153 ---------Y--------GG---WINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPN 190 (400)
Q Consensus 153 ---------~--------gg---~~~~~~~~~f~~ya~~~~~~~~d~v~~-w~t~NEp~ 190 (400)
+ ++ +.|++..+.|.+..+.+.+ .| |++ |.=+||+.
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 11 5678888888777765543 33 555 56688873
No 80
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=61.45 E-value=15 Score=38.37 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=42.2
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCCcc--------ccCC---------CCCCChh--hhHHHHHHHHHHHHcCCceeE
Q 015785 78 GYHKYKEDVKLMADTGLDAYRFSISWSRL--------IPNG---------RGPVNPK--GLQYYNNLINELISYGIQPHV 138 (400)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri--------~p~g---------~g~~n~~--~~~~y~~~i~~l~~~Gi~p~~ 138 (400)
.|.-..+-++-+++||++++=++=...-. .|.- .|.+|+. ..+=++++|++|+++||++|+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 34445677889999999999877533322 1110 0122222 245589999999999999999
Q ss_pred eec
Q 015785 139 TLH 141 (400)
Q Consensus 139 tL~ 141 (400)
++-
T Consensus 100 D~V 102 (479)
T PRK09441 100 DVV 102 (479)
T ss_pred EEC
Confidence 853
No 81
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=61.19 E-value=17 Score=38.64 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=40.7
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccC-CC-----CCCChh--hhHHHHHHHHHHHHcCCceeEeec
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN-GR-----GPVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~-g~-----g~~n~~--~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
+.-..+-++.+++||++++=++--...-.-. |- -.+|+. ..+-++++|++|+++||++|+++-
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3445677889999999998765432211100 00 012221 245689999999999999999854
No 82
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=60.66 E-value=25 Score=35.39 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=47.5
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
.++|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.++.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 58999999999999999998777654220 1323355688999999999999999988874
No 83
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=60.33 E-value=33 Score=33.43 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccC-CCCCCChhhhHHHHHHHHHHHHcCCceeEeecc-CCCcHhHHhhhCCCCC
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWIN 158 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h-~~~P~~l~~~~gg~~~ 158 (400)
+-.+|+++..+.|++.+|+.++=|...-. --+.=-++.++...+.|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~- 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV- 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC-
Confidence 35899999999999999999865543211 023334567899999999999999999887763 5555 23333
Q ss_pred chhHHHHHHHHHHHHHH
Q 015785 159 RTIVKDFTAYADVCFRQ 175 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~ 175 (400)
..+.+.++++.+.+.
T Consensus 153 --~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 --PPEAVADVAERLFAL 167 (287)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 367788888887653
No 84
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=59.58 E-value=21 Score=34.35 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=40.1
Q ss_pred cHHHHHHHHHcCCCceeecccCCc-cccCCCCCCChhhhHHHHHHHHHHHHcCCceeEe
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~t 139 (400)
-+|.++.||++|++.+-++++-+. +.+.-.+.. .++.+.+.++.++++||.+...
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEe
Confidence 489999999999999999988221 333211222 3677889999999999986544
No 85
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.89 E-value=30 Score=34.72 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=61.5
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeecc-CCCcHhHHhhhCCCCCc
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h-~~~P~~l~~~~gg~~~~ 159 (400)
-.+|++...++|++.+.+.++=|...-.- -+.=-++.++.+.++|+.++++|+++.+++.. |..|. .|-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r--- 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGP--- 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCC---
Confidence 68999999999999999998655544221 23335678999999999999999999877753 55552 232
Q ss_pred hhHHHHHHHHHHHHH
Q 015785 160 TIVKDFTAYADVCFR 174 (400)
Q Consensus 160 ~~~~~f~~ya~~~~~ 174 (400)
-.++.+.++++.+.+
T Consensus 194 ~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 VPPSKVAYVAKELYD 208 (347)
T ss_pred CCHHHHHHHHHHHHH
Confidence 336777777777655
No 86
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=58.54 E-value=15 Score=35.38 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.2
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
-.+|++...+.|++.+|+.++=|...-.. .+.=-++.++...+++..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 37899999999999999988654432110 1222356799999999999999999999884
No 87
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=58.44 E-value=60 Score=36.24 Aligned_cols=98 Identities=21% Similarity=0.373 Sum_probs=63.7
Q ss_pred cCCCceeeccc-CCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccC---CCcHh--HHhh-------------
Q 015785 92 TGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQA--LEDE------------- 152 (400)
Q Consensus 92 lG~~~~R~si~-W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~---~~P~~--l~~~------------- 152 (400)
+=++++++.+. |.+ ..+.=.+|+.-+---+++|+.|++.||+.++.+... |.|.. +.++
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 45778999996 887 222234566556666799999999999999887632 33321 1111
Q ss_pred ---------hCCCCCchhHHHHHHHHHHHHHHhcCC--CceEEEecCCccccc
Q 015785 153 ---------YGGWINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNAFAN 194 (400)
Q Consensus 153 ---------~gg~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~~~~ 194 (400)
+-.|+||+.++.|.+ ...+.+.|. .-+|.=+|||.+...
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~---~~~~~l~d~Gv~g~W~D~nEp~~~~~ 421 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWAS---DKKKNLLDLGVDGFWNDMNEPEPFDG 421 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHH---HHHhHHHhcCccEEEccCCCCccccc
Confidence 012678888888887 333434342 445889999997653
No 88
>PRK09505 malS alpha-amylase; Reviewed
Probab=58.13 E-value=22 Score=39.10 Aligned_cols=60 Identities=17% Similarity=0.278 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCceeecccCCccc-----------c----CCC-----CCCChh--hhHHHHHHHHHHHHcCCceeEe
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLI-----------P----NGR-----GPVNPK--GLQYYNNLINELISYGIQPHVT 139 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------p----~g~-----g~~n~~--~~~~y~~~i~~l~~~Gi~p~~t 139 (400)
..+-++.+++||++++=++=-...+. | .|- -.+|+. ..+=++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45567889999999998875443321 1 000 012222 3566899999999999999998
Q ss_pred ec
Q 015785 140 LH 141 (400)
Q Consensus 140 L~ 141 (400)
+-
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 54
No 89
>PRK14705 glycogen branching enzyme; Provisional
Probab=57.11 E-value=55 Score=38.38 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHcCCCceeecc--------cCCccccCCCCCCCh--hhhHHHHHHHHHHHHcCCceeEeec--cCCCcHhHHhhh
Q 015785 86 VKLMADTGLDAYRFSI--------SWSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFDLPQALEDEY 153 (400)
Q Consensus 86 i~l~~~lG~~~~R~si--------~W~ri~p~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~~tL~--h~~~P~~l~~~~ 153 (400)
++.+|+||++++=+.= +|- -.|.+--.++. ...+=++++|++|.++||.+|+++- |+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 6889999999986542 231 11111000110 1244588999999999999999854 552111211111
Q ss_pred C----------------C-------CCCchhHHHHHHHHHHHHHHhc
Q 015785 154 G----------------G-------WINRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 154 g----------------g-------~~~~~~~~~f~~ya~~~~~~~~ 177 (400)
. . +.++++.+.+.+=+..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1 1 2356777777888888888884
No 90
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=57.07 E-value=43 Score=34.84 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P 146 (400)
++|++...+.|++.+|+.++-+.+. -..+.|+.+++.|+++.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5667999999999999998655541 25668899999999888777765545
No 91
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=56.45 E-value=63 Score=35.02 Aligned_cols=96 Identities=11% Similarity=0.100 Sum_probs=57.6
Q ss_pred cHHHH-HHHHHcCCCceeec-ccCCcc------ccCCCCCCCh--hhhHHHHHHHHHHHHcCCceeEeec--cCCC----
Q 015785 82 YKEDV-KLMADTGLDAYRFS-ISWSRL------IPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFDL---- 145 (400)
Q Consensus 82 ~~eDi-~l~~~lG~~~~R~s-i~W~ri------~p~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~~tL~--h~~~---- 145 (400)
..+.+ +.+|+||++++=+. |..+.- .|..--.++. ...+=++++|++|.++||++|+++- |...
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 34564 88999999999883 433211 0110001111 1134589999999999999999854 5431
Q ss_pred -------cHhHHh-----hhCCC-------CCchhHHHHHHHHHHHHHHhc
Q 015785 146 -------PQALED-----EYGGW-------INRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 146 -------P~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (400)
|.+... .+..| .++++.+.+.+-++..++.|+
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 00112 357788888888888888874
No 92
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=56.39 E-value=17 Score=42.69 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCceeecccCCccc-----cC------CCC-----CCCh----hhhHHHHHHHHHHHHcCCceeEee
Q 015785 84 EDVKLMADTGLDAYRFSISWSRLI-----PN------GRG-----PVNP----KGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~ri~-----p~------g~g-----~~n~----~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
+.|+.+|+||++++=+.=-..... +. |-. .+|. ...+=++++|++|+++||++|+++
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 668899999999987653211110 00 000 0111 145668999999999999999984
No 93
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=56.29 E-value=52 Score=32.62 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=62.5
Q ss_pred HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHH
Q 015785 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f 165 (400)
.+.+|++|.+++-|=+-|. |+++..+|..-.++.+++.++|++.+|-=++=+..++.+.- +. .+.++...-
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~~--d~----~~~~yak~k 181 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKIA--DN----GSVEYAKVK 181 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCccc--cc----ccHHHHhhC
Confidence 6889999999999998877 66556789989999999999999999998888766664321 11 122222222
Q ss_pred HHHHHHHHHHhcC---CCceE
Q 015785 166 TAYADVCFRQFGD---RVSYW 183 (400)
Q Consensus 166 ~~ya~~~~~~~~d---~v~~w 183 (400)
-+.+-..++.|++ .|+.|
T Consensus 182 P~~V~~a~kefs~~~~gvDVl 202 (324)
T PRK12399 182 PHKVNEAMKVFSKPRFGVDVL 202 (324)
T ss_pred hHHHHHHHHHhccCCCCCcEE
Confidence 3334445667765 36655
No 94
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.24 E-value=75 Score=33.33 Aligned_cols=112 Identities=19% Similarity=0.425 Sum_probs=69.0
Q ss_pred ccCcHHHHHHHHHcCCCceeec----ccCCccccC-----------------------C-----CCCCChh----hhHHH
Q 015785 79 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPN-----------------------G-----RGPVNPK----GLQYY 122 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~p~-----------------------g-----~g~~n~~----~~~~y 122 (400)
|.+|+..|+.|+-.|+|..=-. +-|.+|+-. | .|+..++ .+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6789999999999999954322 124443321 0 1333221 12234
Q ss_pred HHHHHHHHHcCCceeEeeccCCCcHhHHhhh--------CCCC------------Cc---hhHHHHHHHHHHHHHHhcCC
Q 015785 123 NNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGWI------------NR---TIVKDFTAYADVCFRQFGDR 179 (400)
Q Consensus 123 ~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~--------gg~~------------~~---~~~~~f~~ya~~~~~~~~d~ 179 (400)
+++|+++++-||+|++--+--..|..|..-+ +.|. +| -+++-=..|.+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999887667888876432 2232 11 23333345666677889973
Q ss_pred CceE--EEecCCc
Q 015785 180 VSYW--TTVNEPN 190 (400)
Q Consensus 180 v~~w--~t~NEp~ 190 (400)
-..+ -||||..
T Consensus 237 tniy~~DpFNE~~ 249 (666)
T KOG2233|consen 237 TNIYSADPFNEIL 249 (666)
T ss_pred ccccccCcccccC
Confidence 2223 4899843
No 95
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=56.14 E-value=46 Score=33.36 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=43.6
Q ss_pred HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
++.++++|.+++-+-+-|. |+.+..+|.+-++...++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5778999999999999877 553334577889999999999999999998864
No 96
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=55.27 E-value=70 Score=31.85 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=46.9
Q ss_pred CChhhhHHHHHHHHHHHHcCCceeEeeccC-CCcHhHHh--hhCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCc
Q 015785 114 VNPKGLQYYNNLINELISYGIQPHVTLHHF-DLPQALED--EYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (400)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~-~~P~~l~~--~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (400)
+|++.+.--++++++|++.|++.++.++-+ ..-..... .+-.|.|++..+.|.+..+.+.+ .| -.-+|.=+|||.
T Consensus 58 ~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~ 135 (332)
T cd06601 58 TNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPA 135 (332)
T ss_pred ecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcc
Confidence 344444445789999999999988765421 10000000 01236788888877665544332 12 223589999999
Q ss_pred ccccc
Q 015785 191 AFANL 195 (400)
Q Consensus 191 ~~~~~ 195 (400)
++...
T Consensus 136 ~~~~~ 140 (332)
T cd06601 136 IMPSY 140 (332)
T ss_pred cccCC
Confidence 86543
No 97
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=55.26 E-value=55 Score=32.51 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHH
Q 015785 84 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVK 163 (400)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~ 163 (400)
-+.+.+|++|.+++-|=+-|. |+++-.+|..-.++.+++.++|++.+|-=++=+..+|.+.. +. .+++...
T Consensus 111 ws~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~--d~----~~~eyak 181 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERIS--DN----NSAAYAK 181 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCccc--cc----ccHHHHh
Confidence 357889999999999998877 66556788888999999999999999999998876654321 11 2223322
Q ss_pred HHHHHHHHHHHHhcC---CCceE
Q 015785 164 DFTAYADVCFRQFGD---RVSYW 183 (400)
Q Consensus 164 ~f~~ya~~~~~~~~d---~v~~w 183 (400)
.--+.+-..++.|++ .|+.|
T Consensus 182 ~kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 182 LKPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred hChHHHHHHHHHhccCCCCCcEE
Confidence 223334555677765 36665
No 98
>PRK10785 maltodextrin glucosidase; Provisional
Probab=55.16 E-value=26 Score=37.83 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=38.5
Q ss_pred cHHHHHHHHHcCCCceeeccc-------------CCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 82 YKEDVKLMADTGLDAYRFSIS-------------WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-------------W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
..+-++-+|+||++++=++=- +.+|.|. -| ..+=++++|++|+++||++|+++-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~-~G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ-LG-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345678899999999887632 1122222 12 245589999999999999999854
No 99
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=55.02 E-value=32 Score=32.21 Aligned_cols=78 Identities=17% Similarity=0.369 Sum_probs=52.4
Q ss_pred CCcccCcHHHHHHHHHcCCCceee----------------------cccCCccccCCCCCCChhhhHHHHHHHHHHHHcC
Q 015785 76 CDGYHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYG 133 (400)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~G 133 (400)
.+---.-+.-++++++||.+++.| ++ | +||. |.+| ++.+.+++..+++.|
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaG 202 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAG 202 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcC
Confidence 333445677899999999998874 33 3 5777 6788 888999999999999
Q ss_pred CceeEeeccCCCcHhHHhhhCCCCCchhHHHH
Q 015785 134 IQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (400)
Q Consensus 134 i~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f 165 (400)
++-++- |.- ....++--|-++++-+...
T Consensus 203 v~kviP--HIY--ssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 203 VEKVIP--HVY--SSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred CCeecc--ccc--eeccccccCCCCHHHHHHH
Confidence 987742 311 1122333566666654443
No 100
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=54.69 E-value=48 Score=32.00 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccC-CCCCCChhhhHHHHHHHHHHHHcCCceeEeec-cCCCcHhHHhhhCCCCCc
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HFDLPQALEDEYGGWINR 159 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~-h~~~P~~l~~~~gg~~~~ 159 (400)
-.+|++...+.|++.+++.++=|...-. --+.--++.++...+.++.++++|+++.+++. .|+.|. .|-
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~--- 145 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGE--- 145 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCC---
Confidence 3789999999999999999865543211 01222356789999999999999999998876 355551 232
Q ss_pred hhHHHHHHHHHHHHH
Q 015785 160 TIVKDFTAYADVCFR 174 (400)
Q Consensus 160 ~~~~~f~~ya~~~~~ 174 (400)
-..+.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (274)
T cd07938 146 VPPERVAEVAERLLD 160 (274)
T ss_pred CCHHHHHHHHHHHHH
Confidence 246777888887665
No 101
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=53.89 E-value=55 Score=33.34 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
.|++||++.+++|+++|=+.|. . ..... .+....+++.+.+.|.+.++++
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~-~d~~~---~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------S-SDSWQ---PDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------c-CCccc---HHHHHHHHHHHHhcCCEEEEEe
Confidence 4899999999999999999886 1 12334 3567788899999999999875
No 102
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=53.40 E-value=3.6e+02 Score=30.04 Aligned_cols=150 Identities=20% Similarity=0.206 Sum_probs=84.8
Q ss_pred CccccCCCCCCChhhhHHHHHHHHHHHHc-CCceeEeeccCCC-----cHhHHh----hhCCCC--------------C-
Q 015785 104 SRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHVTLHHFDL-----PQALED----EYGGWI--------------N- 158 (400)
Q Consensus 104 ~ri~p~g~g~~n~~~~~~y~~~i~~l~~~-Gi~p~~tL~h~~~-----P~~l~~----~~gg~~--------------~- 158 (400)
.++.|...|-++.+-++-++++++.++++ |-+.++=|.|-.- +.|... .-+||. .
T Consensus 459 g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p 538 (765)
T PRK08255 459 GRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVP 538 (765)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCC
Confidence 45556545778989999999999999999 6999999999431 112100 002221 0
Q ss_pred --------chhHHHHHHHHHHHHHHhc-CCCceEEEecCCccccccCcccCCC-CCCCCCCccccCCCCCCChhh-HHHH
Q 015785 159 --------RTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPNAFANLGYDYGIA-PPQRCSSINHCSRGNSSTEPY-ITVH 227 (400)
Q Consensus 159 --------~~~~~~f~~ya~~~~~~~~-d~v~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~~~~~~-~~~~ 227 (400)
.++++.|++=|+.+.+ -| |-| .+.+-.||+...| .|-.... ++.| -..-
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgv---------eih~ahGyLl~qFlsp~~N~R----------tD~yGGsle 598 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAE-AGFDWL---------ELHCAHGYLLSSFISPLTNQR----------TDEYGGSLE 598 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCCEE---------EEecccchHHHHhcCCCCCCC----------CCCCCCCHH
Confidence 1266777776666544 33 222 1335568877655 3321110 0111 1223
Q ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEeeCCccccCCCCHHHH-HHHHH
Q 015785 228 HVLLAHASVARLYRKKYQ-RGYIGVNIFAFGLLPLTNSTEDA-IATQR 273 (400)
Q Consensus 228 ~~llAha~a~~~~r~~~~-~~~IG~~~~~~~~~P~~~~~~D~-~aa~~ 273 (400)
|-+.--.+.++.+|+..+ +-.||+-++...+.+...+++|. ..++.
T Consensus 599 nR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~ 646 (765)
T PRK08255 599 NRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARA 646 (765)
T ss_pred HHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHH
Confidence 344444667888888765 56789888765444433345553 33343
No 103
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=53.29 E-value=49 Score=34.63 Aligned_cols=92 Identities=17% Similarity=0.326 Sum_probs=56.8
Q ss_pred eehhehhhhhhcCCcCCCCCCCccceeeccc----CCc----CCCCCcCCCcccCcHHH-----HHHHHHcCCCceeecc
Q 015785 35 LFGASTSAYQVEGAANEDGRTPSIWDTFAHA----GNV----HGTGDIACDGYHKYKED-----VKLMADTGLDAYRFSI 101 (400)
Q Consensus 35 lwG~Atsa~QvEG~~~~dgkg~s~Wd~~~~~----~~~----~~~~~~a~d~y~~~~eD-----i~l~~~lG~~~~R~si 101 (400)
.||+|| +++--.+. ..+.|+....- ++. -..+. -.=.|..|.+| +++.++.|++.+|+.-
T Consensus 54 ~wGGAt--fd~~~rfl----~edpwerlr~~r~~~~nt~lqmLlRG~-n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd 126 (468)
T PRK12581 54 CWGGAT--FDACIRFL----NEDPWERLRTLKKGLPNTRLQMLLRGQ-NLLGYRHYADDIVDKFISLSAQNGIDVFRIFD 126 (468)
T ss_pred ecCCcc--hhhhhccc----CCCHHHHHHHHHHhCCCCceeeeeccc-cccCccCCcchHHHHHHHHHHHCCCCEEEEcc
Confidence 677776 77654432 23568765322 111 01111 11247778899 8999999999999865
Q ss_pred cCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc
Q 015785 102 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (400)
Q Consensus 102 ~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P 146 (400)
... | ++-....|+.+++.|....+++.+=+.|
T Consensus 127 ~ln----------d---~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 127 ALN----------D---PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred cCC----------C---HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 322 1 3445677788888888877777765555
No 104
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=53.11 E-value=26 Score=37.23 Aligned_cols=60 Identities=13% Similarity=0.293 Sum_probs=38.8
Q ss_pred cHHHHHHHHHcCCCceeecccCCccc-cCCC-----CCCChh--hhHHHHHHHHHHHHcCCceeEeec
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLI-PNGR-----GPVNPK--GLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~-p~g~-----g~~n~~--~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
..+-++.+++||++++=++=-.+.-. ..|- -.+|+. ..+=++++|++++++||++|+++-
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45668889999999987663221100 0000 022322 246689999999999999999853
No 105
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=52.18 E-value=40 Score=33.93 Aligned_cols=59 Identities=22% Similarity=0.133 Sum_probs=45.6
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
-++|++.+.+.|++.+|+.++-|.+.-.- -+.-.++.++...+.|+.+++.|+++.++.
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 38999999999999999999877543220 122235678899999999999999987664
No 106
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.92 E-value=2.4e+02 Score=27.63 Aligned_cols=106 Identities=13% Similarity=0.152 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCC--ceeecccCCccccC--CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC---cHhHH--hh-h
Q 015785 84 EDVKLMADTGLD--AYRFSISWSRLIPN--GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL---PQALE--DE-Y 153 (400)
Q Consensus 84 eDi~l~~~lG~~--~~R~si~W~ri~p~--g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~---P~~l~--~~-~ 153 (400)
+-++.+++.|+. ++=+.+.|....-. ..=.+|.+.+.--+++|+.|+++|++.++.++-+-. |..-+ ++ |
T Consensus 33 ~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~ 112 (317)
T cd06599 33 EFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGA 112 (317)
T ss_pred HHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCc
Confidence 344555565553 33333445433100 011344444445679999999999999987764422 22110 00 0
Q ss_pred ----------------C------CCCCchhHHHHHHHHHHHHHHhcCCCc-eEEEecCCcc
Q 015785 154 ----------------G------GWINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEPNA 191 (400)
Q Consensus 154 ----------------g------g~~~~~~~~~f~~ya~~~~~~~~d~v~-~w~t~NEp~~ 191 (400)
. .++|++..+.|.+..+......| |+ +|+=+|||.+
T Consensus 113 ~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G--vdg~w~D~~E~~~ 171 (317)
T cd06599 113 FIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG--IDSTWNDNNEYEI 171 (317)
T ss_pred EEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC--CcEEEecCCCCcc
Confidence 0 14677777777766654444432 44 5788999974
No 107
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=51.72 E-value=1.1e+02 Score=30.53 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=60.4
Q ss_pred CCcCCCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHh
Q 015785 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (400)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~ 151 (400)
+-+|.=||+ |+== ....+.|++.+|+. +|.+-.+ +....+++.++++|+-.=+...|-.+..-+.+
T Consensus 76 PLVaDiHf~-~rla-~~~~~~g~~k~RIN----------PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ 141 (361)
T COG0821 76 PLVADIHFD-YRLA-LEAAECGVDKVRIN----------PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE 141 (361)
T ss_pred CEEEEeecc-HHHH-HHhhhcCcceEEEC----------CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHH
Confidence 334555666 4333 33456788888853 3444222 27899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHH
Q 015785 152 EYGGWINRTIVKDFTAYADVC 172 (400)
Q Consensus 152 ~~gg~~~~~~~~~f~~ya~~~ 172 (400)
+|++-+.+..++--..+++.+
T Consensus 142 ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 142 KYGGPTPEALVESALEHAELL 162 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 998665555555555555543
No 108
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.01 E-value=1.5e+02 Score=28.98 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=75.1
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC---cHhHH---------hhhCCCC-----C----chhHH
Q 015785 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL---PQALE---------DEYGGWI-----N----RTIVK 163 (400)
Q Consensus 105 ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~---P~~l~---------~~~gg~~-----~----~~~~~ 163 (400)
+..|...|-++++.++.++++++.++++|-+.++=|.|-.- |.... ....... + .++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~ 141 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIE 141 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 33454456788899999999999999999999999998531 11000 0000011 1 24778
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCC-CCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 015785 164 DFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRK 242 (400)
Q Consensus 164 ~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~ 242 (400)
.|++-|+.+.+. | |....+..-.||+...| .|...... -..|.+ .-|-..--.+.++.+|+
T Consensus 142 ~~~~aA~~a~~a-G--------fDgveih~~~gyL~~qFlsp~~n~R~--d~yGgs-------~enr~r~~~eii~avr~ 203 (327)
T cd02803 142 DFAAAARRAKEA-G--------FDGVEIHGAHGYLLSQFLSPYTNKRT--DEYGGS-------LENRARFLLEIVAAVRE 203 (327)
T ss_pred HHHHHHHHHHHc-C--------CCEEEEcchhhhHHHHhcCccccCCC--cccCCC-------HHHHHHHHHHHHHHHHH
Confidence 888877776653 2 12222334467776554 33211000 000111 11222223456777777
Q ss_pred hc-CCCeEEEEeeCCccc
Q 015785 243 KY-QRGYIGVNIFAFGLL 259 (400)
Q Consensus 243 ~~-~~~~IG~~~~~~~~~ 259 (400)
.. ++..||+-++.....
T Consensus 204 ~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 204 AVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HcCCCceEEEEechhccC
Confidence 65 356888877754433
No 109
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=50.89 E-value=34 Score=32.07 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=41.5
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCC--CCCCChhhhHHHHHHHHHHHHcCCceeEe-eccCCCc
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG--RGPVNPKGLQYYNNLINELISYGIQPHVT-LHHFDLP 146 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~~t-L~h~~~P 146 (400)
-+.+++=++.++++|.+.+|+...+. |.. ..+.....++..+++.+.+.+.||...+= +.+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 35566778899999999998644321 221 01122334567888888899999987774 3444444
No 110
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.55 E-value=2.6e+02 Score=27.62 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=33.6
Q ss_pred Ccccc---CCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccC
Q 015785 104 SRLIP---NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (400)
Q Consensus 104 ~ri~p---~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~ 143 (400)
.+..| ...+-++.+-+..++++.+.++++|-+.++=|+|-
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 45556 33567788889999999999999999999999993
No 111
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=50.36 E-value=73 Score=31.62 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=51.4
Q ss_pred ChhhhHHHHHHHHHHHHcCCceeEeeccCCC-----cHhHHhh------------------------hCCCCCchhHHHH
Q 015785 115 NPKGLQYYNNLINELISYGIQPHVTLHHFDL-----PQALEDE------------------------YGGWINRTIVKDF 165 (400)
Q Consensus 115 n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~-----P~~l~~~------------------------~gg~~~~~~~~~f 165 (400)
|++.+.--+++|+.|+++|++.++.++-+-. |..-+.+ +-.+.|++.++.|
T Consensus 59 d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 138 (339)
T cd06603 59 DKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWW 138 (339)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHH
Confidence 4444444578999999999999888764422 2211100 0126788999999
Q ss_pred HHHHHHHHHHhc-CCCceEEEecCCcccc
Q 015785 166 TAYADVCFRQFG-DRVSYWTTVNEPNAFA 193 (400)
Q Consensus 166 ~~ya~~~~~~~~-d~v~~w~t~NEp~~~~ 193 (400)
.+..+.+....+ +-+-+|.=+|||.++.
T Consensus 139 ~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 139 ASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HHHHHHHhhcccCCCceEEeccCCccccC
Confidence 888877665432 2345689999998653
No 112
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=49.21 E-value=66 Score=34.70 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc----HhHHhh------
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QALEDE------ 152 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P----~~l~~~------ 152 (400)
++|++..++.|++.+|+..+.+.+ +-....++.++++|+.+.+++..-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 455899999999999999766553 235677788889999888887665555 221110
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 153 ~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
. .|...| ....+.++.+.++++ ..-...+.|-..+
T Consensus 161 ~Gad~I~i~Dt~G~~~P---~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 161 MGVDSICIKDMAGILTP---KAAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred cCCCEEEECCCCCCcCH---HHHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 0 344454 445555566666665 2234678887764
No 113
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=48.97 E-value=60 Score=30.92 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
.+|++..++.|++.+|+.++-+.+ +-..+.++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998766643 2357789999999999999985
No 114
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=48.76 E-value=69 Score=32.89 Aligned_cols=88 Identities=15% Similarity=0.307 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCceeecc--cCCccccCCCCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHh--HHhhhCCCC
Q 015785 83 KEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQA--LEDEYGGWI 157 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~--l~~~~gg~~ 157 (400)
-+|++.+.++.--.-|+++ .|. .+|.+.++ +.++++||..- ++..-|..|+. -.=++|.+.
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd--------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD--------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC--------cCCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 5788888888777777775 672 23655554 89999999988 76665766632 111347787
Q ss_pred Cc--hhHHHHHHHHHHH---HHHhcCC-CceEE
Q 015785 158 NR--TIVKDFTAYADVC---FRQFGDR-VSYWT 184 (400)
Q Consensus 158 ~~--~~~~~f~~ya~~~---~~~~~d~-v~~w~ 184 (400)
|+ ++.+...+-++.| .+..|.+ |+.|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 76 4666667766665 4666664 44443
No 115
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.39 E-value=81 Score=31.42 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCC--ceeecccCCccccCCCCCCChhhhHHH--HHHHHHHHHcCCceeEeeccCCCc--------HhHHh
Q 015785 84 EDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYY--NNLINELISYGIQPHVTLHHFDLP--------QALED 151 (400)
Q Consensus 84 eDi~l~~~lG~~--~~R~si~W~ri~p~g~g~~n~~~~~~y--~~~i~~l~~~Gi~p~~tL~h~~~P--------~~l~~ 151 (400)
+-++.+++.|+. ++=+.+.|..-. +.=.+|++.+.-- +++|+.|+++|++.++.++-+-.+ ..-+.
T Consensus 28 ~~~~~~r~~~iP~d~i~lD~~~~~~~--~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~ 105 (339)
T cd06602 28 EVVENMRAAGIPLDVQWNDIDYMDRR--RDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRG 105 (339)
T ss_pred HHHHHHHHhCCCcceEEECcccccCc--cceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHH
Confidence 344455555543 333444454221 1223344434334 889999999999999887644332 11110
Q ss_pred --h-----------h--------C---CCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 152 --E-----------Y--------G---GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 152 --~-----------~--------g---g~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
+ | + .++|++..+.|.+..+.+...+|= .-+|.=+|||..
T Consensus 106 ~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 106 LEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 0 0 1 266888888877766665554432 344788999974
No 116
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=46.59 E-value=75 Score=31.53 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc
Q 015785 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (400)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P 146 (400)
+.+.+|++|.+++-|=+-|. |+++..+|..-.++.+++.++|++++|-=++=+..+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47889999999999988765 554457888889999999999999999999988777654
No 117
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=46.44 E-value=49 Score=34.33 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=60.1
Q ss_pred cHHHHHHHHHcCCCceeecc-cCCc-cccCCCCCCChhhhHHHHHHHHHHHHcC-CceeEeeccCCCcHhHHhhhCCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~G-i~p~~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-+|.+++|+++|+|.+-+++ +-+. +... -|+.. ..+-..+.|+.+++.| +.+.++|- +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg----------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG----------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC-----------
Confidence 36889999999999887777 3332 2222 23322 1345668889999999 66766764 56663
Q ss_pred chhHHHHHHHHHHHHHHhcCCCceEEEecCCccc
Q 015785 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 192 (400)
++.+.|.+=.+.+.+-=-++|..+...-||...
T Consensus 227 -qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~ 259 (449)
T PRK09058 227 -QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTP 259 (449)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCH
Confidence 223445444555544334678888777788753
No 118
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=45.88 E-value=1.3e+02 Score=29.64 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=58.7
Q ss_pred HHHHHHcCCC--ceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC-----cHhHHhh------
Q 015785 86 VKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL-----PQALEDE------ 152 (400)
Q Consensus 86 i~l~~~lG~~--~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~-----P~~l~~~------ 152 (400)
++.+++.++. ++=+.+.|..- .+.=.+|++.+.-..++|+.|+++|++.++.++-+-. |......
T Consensus 30 ~~~~~~~~iP~d~i~lD~~~~~~--~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v 107 (317)
T cd06600 30 VDIMQKEGFPYDVVFLDIHYMDS--YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFC 107 (317)
T ss_pred HHHHHHcCCCcceEEEChhhhCC--CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEE
Confidence 4444444443 44444445321 1112345555555678999999999998877653321 2221100
Q ss_pred ------------------hCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 153 ------------------YGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 153 ------------------~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
+-.|+||+..+.|.+..+.+....|= .-+|.=+|||..
T Consensus 108 ~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~ 163 (317)
T cd06600 108 EIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSD 163 (317)
T ss_pred ECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCcc
Confidence 01267888888888777766544331 235788999974
No 119
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=45.84 E-value=55 Score=33.18 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
++|++.+.+.|++.+|++++-|.+.-.- -+.--++.++...+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999776653220 233345679999999999999999988874
No 120
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=44.15 E-value=59 Score=31.10 Aligned_cols=77 Identities=13% Similarity=0.068 Sum_probs=53.0
Q ss_pred HHHHHHHHHcC----CCceeecccCCccc--cCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCC
Q 015785 83 KEDVKLMADTG----LDAYRFSISWSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW 156 (400)
Q Consensus 83 ~eDi~l~~~lG----~~~~R~si~W~ri~--p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~ 156 (400)
.+|++...+.| ++.+|+.++.|.+. -+ -+.=.++.++...+.++.+++.|+++.++..+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 99999987665543 22 12222346888899999999999987755421 222
Q ss_pred CCchhHHHHHHHHHHHHH
Q 015785 157 INRTIVKDFTAYADVCFR 174 (400)
Q Consensus 157 ~~~~~~~~f~~ya~~~~~ 174 (400)
...+.+.+.++.+.+
T Consensus 140 ---~~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 ---TDLDFLIEVVEAAIE 154 (268)
T ss_pred ---CCHHHHHHHHHHHHH
Confidence 235666777777654
No 121
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=43.82 E-value=44 Score=33.32 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHH
Q 015785 84 EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVK 163 (400)
Q Consensus 84 eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~ 163 (400)
.-|++|.+.|++-+=.|+ +.|++ -+...++.++++++.+.+.|+++|+++. |+-|.. -||.- ..++
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S~-~~l~ 85 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNISL-DNLS 85 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCCh-HHHH
Confidence 347788888988776665 23442 2345799999999999999999999984 877643 34432 3345
Q ss_pred HHHHH
Q 015785 164 DFTAY 168 (400)
Q Consensus 164 ~f~~y 168 (400)
.|...
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55544
No 122
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=43.65 E-value=79 Score=31.54 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=59.9
Q ss_pred CCcccCcHHHHHHHHHcCCCceeecccCCccccC------CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhH
Q 015785 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPN------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (400)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~------g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l 149 (400)
++.+-.-++=++.+.++|++-+-+|++ -+-|. |..-+| +++-.++.+.+.+.||.++++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec
Confidence 344555677789999999997777773 34443 223566 888899999999999999987 8888
Q ss_pred HhhhCCCCCchhHHHHHHHHHHHH
Q 015785 150 EDEYGGWINRTIVKDFTAYADVCF 173 (400)
Q Consensus 150 ~~~~gg~~~~~~~~~f~~ya~~~~ 173 (400)
-| .|.+-...+..||+.+-
T Consensus 266 ----PG-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 ----PG-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred ----CC-cChHHHHHHHHHHHHhC
Confidence 34 34455678888887764
No 123
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=43.58 E-value=75 Score=30.55 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCceeecccCCccccC-CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchh
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~ 161 (400)
+.+++.+++.|++.+|+.++=|...-. ..|.-.++.++...+.++.+++.|+++.++.-+|. + +. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~------d--~~---~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFF------D--GY---KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecc------c--cC---CCC
Confidence 468999999999999998764433211 12333356799999999999999999988766551 1 11 123
Q ss_pred HHHHHHHHHHHHH
Q 015785 162 VKDFTAYADVCFR 174 (400)
Q Consensus 162 ~~~f~~ya~~~~~ 174 (400)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5666777777654
No 124
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=43.49 E-value=58 Score=32.57 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=54.2
Q ss_pred cHHHHHHHHHcCCCceeeccc-CC-ccccCCCCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHhHHhhhCCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-++.++.|+++|++.+-+++. -+ ++... -|+. ...+-+.+.|+.+++.|+.++ ++|- +++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg----------- 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQ--HSAKNIAPAIETALKSGIENISLDLM-YGLPL----------- 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCeEEEecc-CCCCC-----------
Confidence 368899999999996666663 32 23322 2332 125667889999999999754 4442 55663
Q ss_pred chhHHHHHHHHHHHHHHhcCCCceEEEecCCc
Q 015785 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (400)
++.+.+.+-.+.+.+.=-+++..+...=||+
T Consensus 164 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 -QTLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred -CCHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 2345555555555442223444443333444
No 125
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=43.25 E-value=3.6e+02 Score=27.11 Aligned_cols=193 Identities=17% Similarity=0.136 Sum_probs=102.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc---------------HhHHhh--------------hCCCC----
Q 015785 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP---------------QALEDE--------------YGGWI---- 157 (400)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P---------------~~l~~~--------------~gg~~---- 157 (400)
.+-+|.+-+.-++++.+.++++|-+.++=|+|-.-- ...... ..+-.
T Consensus 70 ~~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~m 149 (362)
T PRK10605 70 PGLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRAL 149 (362)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccC
Confidence 456788889999999999999999999999995311 000000 00000
Q ss_pred C----chhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCC-CCCCCCCccccCCCCCCChhh-HHHHHHHH
Q 015785 158 N----RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQRCSSINHCSRGNSSTEPY-ITVHHVLL 231 (400)
Q Consensus 158 ~----~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~ll 231 (400)
+ .++++.|++=|+.+.+.==|-| .+.+-.||+...| .|..... ++.| -..-|-++
T Consensus 150 t~~eI~~ii~~f~~AA~rA~~AGfDGV---------EIh~ahGyLl~qFLSp~~N~R----------tDeYGGslENR~R 210 (362)
T PRK10605 150 ELEEIPGIVNDFRQAIANAREAGFDLV---------ELHSAHGYLLHQFLSPSSNQR----------TDQYGGSVENRAR 210 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEE---------EEcccccchHHHhcCCcCCCC----------CCcCCCcHHHHHH
Confidence 0 2467777776666554222333 2456678887765 3431111 1111 12234444
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeeCCcc---ccCCCCHHH--HHHHHHHHHhhhccccCccccC------CCChhHHHHhc
Q 015785 232 AHASVARLYRKKYQRGYIGVNIFAFGL---LPLTNSTED--AIATQRYYDFLIGWMANPLVYG------DYPKIMKQNVG 300 (400)
Q Consensus 232 Aha~a~~~~r~~~~~~~IG~~~~~~~~---~P~~~~~~D--~~aa~~~~~~~~~~~ldp~~~G------~YP~~~~~~l~ 300 (400)
--...++.+|+..+...||+-++.... .+...+++| +..++.....-. -+++.- .| .|+..+.+.++
T Consensus 211 f~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~gi-D~i~vs-~~~~~~~~~~~~~~~~~ik 288 (362)
T PRK10605 211 LVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGI-AYLHMS-EPDWAGGEPYSDAFREKVR 288 (362)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCC-CEEEec-cccccCCccccHHHHHHHH
Confidence 456778888887664468887765421 121124444 344444332101 122221 12 23444434444
Q ss_pred cc--CC-----CCCHHHHhhh--cCCCcEEEee
Q 015785 301 SR--LP-----AFSDRESKQV--KGSADFLGVI 324 (400)
Q Consensus 301 ~~--lp-----~~t~~d~~~i--k~~~DFiGiN 324 (400)
.. .| .+++++.+.+ .|.+|++|+-
T Consensus 289 ~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 289 ARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 32 12 2566666554 3678999874
No 126
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=43.11 E-value=59 Score=36.19 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCceeecccCC---------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeecc
Q 015785 85 DVKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (400)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~---------------ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h 142 (400)
-+..+|+||++++=+.=-.. .+.|. -|. .+-++++|++|.++||++|+++-+
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~-~Gt-----p~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR-SGT-----PEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 48999999999998763221 11111 121 345889999999999999998653
No 127
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=43.07 E-value=1e+02 Score=30.38 Aligned_cols=108 Identities=16% Similarity=0.282 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCC-ceeeccc-CC-cccc-C-CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCC
Q 015785 83 KEDVKLMADTGLD-AYRFSIS-WS-RLIP-N-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 83 ~eDi~l~~~lG~~-~~R~si~-W~-ri~p-~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~ 157 (400)
+|.+++|+++|++ .+=++++ -+ ++.- . ++| .+ .+-+.+.++.++++||.+.+.+- +.+|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------CC
Confidence 7889999999987 4555552 22 1221 1 122 23 56688999999999999776654 34442 12
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCCCC
Q 015785 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPP 204 (400)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~p 204 (400)
..+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23567778777777765 45777766555556543322345565544
No 128
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=42.52 E-value=1.1e+02 Score=34.13 Aligned_cols=104 Identities=16% Similarity=0.334 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCC--ceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec---cCCCc-----------H
Q 015785 84 EDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLP-----------Q 147 (400)
Q Consensus 84 eDi~l~~~lG~~--~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~---h~~~P-----------~ 147 (400)
+=++.+.++|+. ..=..|+|-.-.. +=.+|...+-...++++.|.++|++.++.+. +-+.. .
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 335666777766 5555555543322 2456777777899999999999999999987 33332 0
Q ss_pred hHHhh----------hCC------CCCchhHHHHHHHHHHHHHHhcCCCc---eEEEecCCcccc
Q 015785 148 ALEDE----------YGG------WINRTIVKDFTAYADVCFRQFGDRVS---YWTTVNEPNAFA 193 (400)
Q Consensus 148 ~l~~~----------~gg------~~~~~~~~~f~~ya~~~~~~~~d~v~---~w~t~NEp~~~~ 193 (400)
|..+. ..| ++|++++ .++...+++|.+.|. +|+-+|||.-+.
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~----~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~ 453 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVV----EWWLDELKRFHDEVPFDGFWIDMNEPSNFP 453 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHH----HHHHHHHHhhcccCCccceEEECCCcccCC
Confidence 11110 012 4555444 444556668988876 599999997554
No 129
>PRK05474 xylose isomerase; Provisional
Probab=42.32 E-value=4.1e+02 Score=27.54 Aligned_cols=144 Identities=15% Similarity=0.097 Sum_probs=78.3
Q ss_pred HHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHH----HHHHcCCcee-EeeccCCCcHhHHhhhCCCCCc
Q 015785 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLIN----ELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (400)
Q Consensus 85 Di~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~----~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~~~ 159 (400)
-++.+.+||+..|-|- =..|.|+| .-..+..+..+++++ .+.+-||+.. +|..-|..|.... |+++|+
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg--~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tnp 156 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEG--ASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATNP 156 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCCC
Confidence 3667999999987664 23477884 222333344455554 4557899865 4666788897652 889988
Q ss_pred hhHHHHHHHHHH------HHHHhcCCCceEEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHH
Q 015785 160 TIVKDFTAYADV------CFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAH 233 (400)
Q Consensus 160 ~~~~~f~~ya~~------~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAh 233 (400)
+. +.|+.=++. +.+++|... .+.|.|. -|.-.+. .+...+..-|+..+=
T Consensus 157 d~-~Vra~A~~qvk~alD~~~eLGge~----------yV~WgGR-EGye~~~-------------ntD~~~e~d~~~~~l 211 (437)
T PRK05474 157 DP-DVFAYAAAQVKTALDATKRLGGEN----------YVFWGGR-EGYETLL-------------NTDLKREREQLARFL 211 (437)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHhCCCe----------EEECCCc-ccccchh-------------hcCHHHHHHHHHHHH
Confidence 63 333332333 246666531 2222221 1111111 012234455666666
Q ss_pred HHHHHHHHHhcCCCeEEEEeeCCccccCC
Q 015785 234 ASVARLYRKKYQRGYIGVNIFAFGLLPLT 262 (400)
Q Consensus 234 a~a~~~~r~~~~~~~IG~~~~~~~~~P~~ 262 (400)
..+++..+++.-+++|.| ..-|..|..
T Consensus 212 ~~v~dYa~~iGf~~~f~I--EPKP~EPr~ 238 (437)
T PRK05474 212 QMVVDYKHKIGFKGTFLI--EPKPQEPTK 238 (437)
T ss_pred HHHHHHhhhcCCCceEEe--ccCCCCCCC
Confidence 666666666555566654 345666654
No 130
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=42.26 E-value=3.6e+02 Score=26.81 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=32.1
Q ss_pred cccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC
Q 015785 106 LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (400)
Q Consensus 106 i~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~ 144 (400)
..|...+-++.+.+..++++.+.++++|-+.++=|+|..
T Consensus 63 ~~~~~~~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G 101 (338)
T cd02933 63 GYPNTPGIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVG 101 (338)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCc
Confidence 344334556888899999999999999999999999954
No 131
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=42.03 E-value=61 Score=30.61 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=43.2
Q ss_pred cccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhc
Q 015785 100 SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 100 si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (400)
.+.|..+.++|.-.... .......+++.++++|+++++++..+....... -..++...+.|++=+-..+++|+
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 34566665553222211 123567889999999999999997655432111 12356666777666666666653
No 132
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.58 E-value=1e+02 Score=30.74 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhH
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~ 162 (400)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+++..-. +-..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMSH--------------MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CCCH
Confidence 689999999999999998755543 2357899999999999999886321 1234
Q ss_pred HHHHHHHHHHHHHhc
Q 015785 163 KDFTAYADVCFRQFG 177 (400)
Q Consensus 163 ~~f~~ya~~~~~~~~ 177 (400)
+.+.+.++.+. .+|
T Consensus 144 e~l~~~a~~~~-~~G 157 (337)
T PRK08195 144 EKLAEQAKLME-SYG 157 (337)
T ss_pred HHHHHHHHHHH-hCC
Confidence 66667776654 354
No 133
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.48 E-value=1.6e+02 Score=29.31 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec--cCCCcHh
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--HFDLPQA 148 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~--h~~~P~~ 148 (400)
..+|++...+.|++.+|+....+.. +-..+.|+.+++.|+++.+.+. |...|..
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~ 144 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEK 144 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHH
Confidence 3689999999999999988754433 2346889999999999988774 4334443
No 134
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=41.37 E-value=3.7e+02 Score=26.73 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=76.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcH----------hHHhhhCC-----CCC---chhHHHHHHHHHHH
Q 015785 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ----------ALEDEYGG-----WIN---RTIVKDFTAYADVC 172 (400)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~----------~l~~~~gg-----~~~---~~~~~~f~~ya~~~ 172 (400)
.+-++.+.+..++++.+.++++|-..++=|.|...-. .......+ .+. +++++.|++=|+.+
T Consensus 72 ~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a 151 (337)
T PRK13523 72 LGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRA 151 (337)
T ss_pred eecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3456888899999999999999999999999965311 00000000 011 14677888766666
Q ss_pred HHHhcCCCceEEEecCCccccccCcccCCC-CCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Q 015785 173 FRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGV 251 (400)
Q Consensus 173 ~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~ 251 (400)
.+.==|-| .+.+-.||+...| .|...... -..|- ..-|-+.--.+.++.+|+.. +..||+
T Consensus 152 ~~aGfDgV---------eih~ahGyLl~qFlSp~~N~Rt--D~yGG-------slenR~Rf~~eii~~ir~~~-~~~v~v 212 (337)
T PRK13523 152 KEAGFDVI---------EIHGAHGYLINEFLSPLSNKRT--DEYGG-------SPENRYRFLREIIDAVKEVW-DGPLFV 212 (337)
T ss_pred HHcCCCEE---------EEccccchHHHHhcCCccCCcC--CCCCC-------CHHHHHHHHHHHHHHHHHhc-CCCeEE
Confidence 55311222 2345568887765 33211000 00111 12233333355667777765 557888
Q ss_pred EeeCCccccCCCCHHHH
Q 015785 252 NIFAFGLLPLTNSTEDA 268 (400)
Q Consensus 252 ~~~~~~~~P~~~~~~D~ 268 (400)
-++...+.+...+++|.
T Consensus 213 Ris~~d~~~~G~~~~e~ 229 (337)
T PRK13523 213 RISASDYHPGGLTVQDY 229 (337)
T ss_pred EecccccCCCCCCHHHH
Confidence 77754444432345544
No 135
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=40.76 E-value=52 Score=36.88 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=41.1
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCccccC--C-----CCCCChh--hhHHHHHHHHHHHHcCCceeEee
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPN--G-----RGPVNPK--GLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~--g-----~g~~n~~--~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
....+-+..+++||++++=+|=-+.-.-.. | ...+|++ +.+-+++++++++++||.+|+++
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 346778899999999999776433211000 1 0122222 35568999999999999999985
No 136
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=40.73 E-value=60 Score=35.76 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=36.2
Q ss_pred HHHHHHcCCCceeecc--cCCc--------------cccCCCCCCChh-----hhHHHHHHHHHHHHcCCceeEeec
Q 015785 86 VKLMADTGLDAYRFSI--SWSR--------------LIPNGRGPVNPK-----GLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 86 i~l~~~lG~~~~R~si--~W~r--------------i~p~g~g~~n~~-----~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
++.+|+||++++=+.= +... .-|..--.++.. .++=++++|++|+++||++|+++-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7889999999997663 2110 001000011111 256689999999999999999854
No 137
>PRK12568 glycogen branching enzyme; Provisional
Probab=40.49 E-value=52 Score=36.44 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=56.5
Q ss_pred ccCcHHH-HHHHHHcCCCceeecc--------cCCccccCCCCCCCh--hhhHHHHHHHHHHHHcCCceeEeec--cCCC
Q 015785 79 YHKYKED-VKLMADTGLDAYRFSI--------SWSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFDL 145 (400)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~si--------~W~ri~p~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~~tL~--h~~~ 145 (400)
|.-..+. +.-+|+||++++=+.= +|- ..|.+.-.++. -..+-++++|++|.++||++|+++- |+.-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3334444 5889999999986542 231 11111001111 1245689999999999999999854 4431
Q ss_pred cH---------hHHh----h---hCCC-------CCchhHHHHHHHHHHHHHHhc
Q 015785 146 PQ---------ALED----E---YGGW-------INRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 146 P~---------~l~~----~---~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (400)
-. .+.. + +..| .++++.+.+.+-++.-+++|+
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 10 0000 0 0123 356777777887787788774
No 138
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=39.82 E-value=46 Score=34.25 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=38.4
Q ss_pred HHHHHHHHcCCCceeecc------cCCccccCCCCCCCh--hhhHHHHHHHHHHHHcCCceeEee--cc
Q 015785 84 EDVKLMADTGLDAYRFSI------SWSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTL--HH 142 (400)
Q Consensus 84 eDi~l~~~lG~~~~R~si------~W~ri~p~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~~tL--~h 142 (400)
+-++.+++||++++=++= ++.+--..---.+|+ -.++-.++++++++++||++++++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 556789999999985442 111111110012222 236788999999999999999997 45
No 139
>PLN02923 xylose isomerase
Probab=39.55 E-value=2.6e+02 Score=29.01 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=53.2
Q ss_pred HHHHHcCCCceeeccc-CCcc-----ccCCCCC----CC------hhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHH
Q 015785 87 KLMADTGLDAYRFSIS-WSRL-----IPNGRGP----VN------PKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (400)
Q Consensus 87 ~l~~~lG~~~~R~si~-W~ri-----~p~g~g~----~n------~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~ 150 (400)
+.|++ ++||++. |.-+ -|-|.+. ++ +.+.+..|-.++.+.+.|+ |.+|+|--|+=.
T Consensus 78 K~M~e----hlRFav~yWHTf~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~-~y~cFHD~Dl~P--- 149 (478)
T PLN02923 78 KKMKD----WMRFSVAFWHTFRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGV-DRWCFHDRDIAP--- 149 (478)
T ss_pred ccHHH----hhhhhheeeeecCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCC-CeEccCccccCC---
Confidence 55665 7899874 5333 3333322 22 1256677778889999998 677988777421
Q ss_pred hhhCCC--CCchhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCC
Q 015785 151 DEYGGW--INRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA 202 (400)
Q Consensus 151 ~~~gg~--~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~ 202 (400)
. |.= .+.+..+.-+++.+...+.-|-+ +.|+-+|+++.--|+.|.+
T Consensus 150 -e-g~sl~E~~~nld~ivd~~ke~~~~TGik----llwgTaNlFshPrf~~GAa 197 (478)
T PLN02923 150 -D-GKTLEESNANLDEVVALAKELQEGTKIR----PLWGTAQLFKHPRYMHGAA 197 (478)
T ss_pred -C-CCCHHHHHhhHHHHHHHHHHHhHhhCce----eeeeccccccCccccCCcC
Confidence 1 110 11123344444444444433322 3344455665545555543
No 140
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=38.66 E-value=97 Score=30.92 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHHHcCCCceeecccCCc---cccCCCCCCCh----hhhHHHHHHHHHHHHcCCceeEeeccCC
Q 015785 86 VKLMADTGLDAYRFSISWSR---LIPNGRGPVNP----KGLQYYNNLINELISYGIQPHVTLHHFD 144 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~r---i~p~g~g~~n~----~~~~~y~~~i~~l~~~Gi~p~~tL~h~~ 144 (400)
++++|++|++.+=+.-.-.. +.|.....+|. -.-+...+++++|+++||++.+-++++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 79999999998775432211 22221112221 1357789999999999999999888765
No 141
>PRK14706 glycogen branching enzyme; Provisional
Probab=38.53 E-value=1.6e+02 Score=32.09 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=52.0
Q ss_pred HHHHHcCCCceeecc--c------CCccccCCCCCCCh--hhhHHHHHHHHHHHHcCCceeEeec--cCCC---------
Q 015785 87 KLMADTGLDAYRFSI--S------WSRLIPNGRGPVNP--KGLQYYNNLINELISYGIQPHVTLH--HFDL--------- 145 (400)
Q Consensus 87 ~l~~~lG~~~~R~si--~------W~ri~p~g~g~~n~--~~~~~y~~~i~~l~~~Gi~p~~tL~--h~~~--------- 145 (400)
+.+|+||++++-+.= + |- -.|.+--.++. ...+=++++|++|.++||++|+++- |+.-
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wG-Y~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWG-YQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCC-cCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 568999999987542 1 10 00000000111 1244589999999999999999854 5321
Q ss_pred --cHh-HHhhhCC----C-------CCchhHHHHHHHHHHHHHHhc
Q 015785 146 --PQA-LEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 146 --P~~-l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 177 (400)
|.+ ..+...| | .++++.+.+.+=++.-++.|+
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 111 0000011 2 256777888888888888884
No 142
>PLN02389 biotin synthase
Probab=38.44 E-value=83 Score=31.97 Aligned_cols=58 Identities=21% Similarity=0.184 Sum_probs=42.8
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCc-cccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
..-+|.++.+|++|++.|-.+++=++ +.+.-...- .++..-+.++.+++.||++..++
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 35789999999999999998885222 444411112 37778899999999999886664
No 143
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=37.86 E-value=1.2e+02 Score=30.36 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=54.7
Q ss_pred cHHHHHHHHHcCCCceeeccc-C-CccccCCCCC-CChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHhHHhhhCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W-~ri~p~g~g~-~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~ 157 (400)
-+|.+++|+++|++.+-++++ = .++... -|+ .+ .+...+.|+.+++.|+..+ +++ =+++|.
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~-l~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------- 163 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKK-IGRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG---------- 163 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC----------
Confidence 478999999999997777762 2 233322 122 23 5567899999999999743 333 255663
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
++.+.|.+=.+.+.+.=-+.|..+...-+|..
T Consensus 164 --qt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT 195 (377)
T PRK08599 164 --QTIEDFKESLAKALALDIPHYSAYSLILEPKT 195 (377)
T ss_pred --CCHHHHHHHHHHHHccCCCEEeeeceeecCCC
Confidence 22345555555543322234544444456654
No 144
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=36.63 E-value=1.1e+02 Score=37.37 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=43.4
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccC--CC-----CCCChh--hhHHHHHHHHHHHHcCCceeEee--ccCC
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN--GR-----GPVNPK--GLQYYNNLINELISYGIQPHVTL--HHFD 144 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~--g~-----g~~n~~--~~~~y~~~i~~l~~~Gi~p~~tL--~h~~ 144 (400)
+....+-+..+++||++++=+|=-+.-.--. |- ..+|++ +.+-+++++++|+++||.+|+++ .|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 3446677889999999999766444311000 00 122322 35568999999999999999986 3653
No 145
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=36.53 E-value=68 Score=34.66 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHcCCceeEeec
Q 015785 119 LQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
.+=++++|++|.++||++|+++-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 45689999999999999999854
No 146
>PRK12677 xylose isomerase; Provisional
Probab=35.93 E-value=4.8e+02 Score=26.48 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=53.2
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHhHHhhhCCCCCc
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~~~ 159 (400)
...|-++.++++|++++=+.. ..+.|-+ .-..+--+..+++-+.+.+.||++. +|...|..|.+ +.|++.++
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 367889999999999886632 2244431 1111111246778888999999976 55554555543 33788875
Q ss_pred h-hHHHH-HHHHHHH---HHHhcC
Q 015785 160 T-IVKDF-TAYADVC---FRQFGD 178 (400)
Q Consensus 160 ~-~~~~f-~~ya~~~---~~~~~d 178 (400)
+ .+.++ .++.+.+ +..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3 12222 4444433 455654
No 147
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.85 E-value=1.8e+02 Score=29.36 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=59.0
Q ss_pred CCcCCCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHh
Q 015785 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (400)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~ 151 (400)
+-+|.=||+ |+--++. .+.|++.+|+ - +|.+-. --+..+.+++.++++|+..=+...|-.++..+.+
T Consensus 82 PlvADIHFd-~~lAl~a-~~~G~~~iRI-------N---PGNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~ 148 (360)
T PRK00366 82 PLVADIHFD-YRLALAA-AEAGADALRI-------N---PGNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLE 148 (360)
T ss_pred CEEEecCCC-HHHHHHH-HHhCCCEEEE-------C---CCCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHH
Confidence 334655653 2322322 4669999964 3 344521 0356899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHH
Q 015785 152 EYGGWINRTIVKDFTAYADVC 172 (400)
Q Consensus 152 ~~gg~~~~~~~~~f~~ya~~~ 172 (400)
+||+-+.+..++.-.++++.+
T Consensus 149 ~yg~~t~eamveSAl~~~~~l 169 (360)
T PRK00366 149 KYGEPTPEALVESALRHAKIL 169 (360)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 986533344555555555554
No 148
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=35.58 E-value=87 Score=30.40 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
--++|++...++|++.+-+.++=|...-.- -+.=-++.++.+.++++.++++|+++-+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 358999999999999988887655443220 233356789999999999999999999887
No 149
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=35.36 E-value=29 Score=25.76 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=31.6
Q ss_pred CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC
Q 015785 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (400)
Q Consensus 104 ~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~ 144 (400)
+++.|. ++.=-.++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 567788 555567889999999999999999 888877543
No 150
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=35.25 E-value=5.3e+02 Score=26.73 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=78.4
Q ss_pred HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHH----HHHHcCCceeE-eeccCCCcHhHHhhhCCCCCch
Q 015785 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLIN----ELISYGIQPHV-TLHHFDLPQALEDEYGGWINRT 160 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~----~l~~~Gi~p~~-tL~h~~~P~~l~~~~gg~~~~~ 160 (400)
++.+.+||+..|-|- =..|.|+| .-..+..+..+++++ .+.+-||+..+ |..-|..|.... |+++|++
T Consensus 84 Fef~~kLg~~~~~FH--D~D~~peg--~~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnPd 156 (434)
T TIGR02630 84 FEFFEKLGVPYYCFH--DRDIAPEG--ASLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSPD 156 (434)
T ss_pred HHHHHHhCCCeeccC--ccccCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCCC
Confidence 566899999887653 33477884 222333334455554 45678999654 666788897752 8899886
Q ss_pred hHHHHHHHHHH------HHHHhcCCCceEEEecCCccccccCcccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHH
Q 015785 161 IVKDFTAYADV------CFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHA 234 (400)
Q Consensus 161 ~~~~f~~ya~~------~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha 234 (400)
. +.|+.=+.. +.+++|.. +.+.|.|. -|.-.+. .+...+..-|+..+-.
T Consensus 157 ~-~Vra~A~~qvk~alD~~~eLGge----------nyV~WgGR-EGye~~l-------------ntD~~~e~d~~~~~l~ 211 (434)
T TIGR02630 157 A-DVFAYAAAQVKKALEVTKKLGGE----------NYVFWGGR-EGYETLL-------------NTDMKRELDHLARFLH 211 (434)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhCCC----------eEEECCCc-ccccccc-------------ccCHHHHHHHHHHHHH
Confidence 3 333333333 24566643 12222221 1111111 1123345556666666
Q ss_pred HHHHHHHHhcCCCeEEEEeeCCccccCC
Q 015785 235 SVARLYRKKYQRGYIGVNIFAFGLLPLT 262 (400)
Q Consensus 235 ~a~~~~r~~~~~~~IG~~~~~~~~~P~~ 262 (400)
.+++..+++.-+++|.| ..-|..|..
T Consensus 212 ~~~dYa~~iGf~~~f~I--EPKP~EPr~ 237 (434)
T TIGR02630 212 MAVDYAKKIGFKGQFLI--EPKPKEPTK 237 (434)
T ss_pred HHHHHhhhcCCCceEEe--ccCCCCccc
Confidence 67776666655666654 344566654
No 151
>PLN02960 alpha-amylase
Probab=35.01 E-value=93 Score=35.18 Aligned_cols=94 Identities=10% Similarity=0.188 Sum_probs=57.5
Q ss_pred cccCcHHH-HHHHHHcCCCceeeccc--------CC-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 78 GYHKYKED-VKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 78 ~y~~~~eD-i~l~~~lG~~~~R~si~--------W~-------ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
.|.-..+. +..+|+||++++=+.=- |- .+.|. -|. .+=++.+|++|.++||.+|+++-
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yGt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FGT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cCC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45445444 89999999999876521 11 11111 122 34578999999999999999973
Q ss_pred --cCCC--c--HhHHhh-------------hCCC-------CCchhHHHHHHHHHHHHHHhc
Q 015785 142 --HFDL--P--QALEDE-------------YGGW-------INRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 142 --h~~~--P--~~l~~~-------------~gg~-------~~~~~~~~f~~ya~~~~~~~~ 177 (400)
|+.- + .+..+. ...| .++++.+.+.+-++.-++.|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5431 1 111000 0112 245677788888888888884
No 152
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=34.96 E-value=1.4e+02 Score=30.53 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=60.9
Q ss_pred cHHHHHHHHHcCCCceeecc-cCC-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCc-eeEeeccCCCcHhHHhhhCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~g~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~~tL~h~~~P~~l~~~~gg~~ 157 (400)
-++.++.++++|++.+-+++ +-+ ++... -|+ .+ .+-..+.++.+++.|++ +-++|- +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~-l~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLAL-CGRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHH-hCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 46889999999999666665 222 12222 122 22 34466888999999998 556664 56663
Q ss_pred CchhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCC
Q 015785 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGI 201 (400)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~ 201 (400)
++.+.+.+=++.+.+-=-++|..+...-||......-+..|.
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~ 220 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGK 220 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCC
Confidence 233445444444444333567777777777754333343343
No 153
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=34.54 E-value=1.1e+02 Score=29.80 Aligned_cols=84 Identities=10% Similarity=0.114 Sum_probs=54.6
Q ss_pred HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC----cHhHHhhhCCCCCchh
Q 015785 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL----PQALEDEYGGWINRTI 161 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~----P~~l~~~~gg~~~~~~ 161 (400)
.+.+++-+-.-=-++..|-.+.|+| .+... ...++++.++++|+++++++..++- +.-+. .-..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~---~~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAH---AVLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH---HHhcCHHH
Confidence 5667776666667888899998774 34322 2468999999999999999976541 11111 01235566
Q ss_pred HHHHHHHHHHHHHHhc
Q 015785 162 VKDFTAYADVCFRQFG 177 (400)
Q Consensus 162 ~~~f~~ya~~~~~~~~ 177 (400)
.+.|++=+-.+++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6677666666666664
No 154
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=34.53 E-value=1.1e+02 Score=28.84 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhc
Q 015785 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (400)
.+...+.|..++++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4556788999999999999998754432111 011344445666665555566664
No 155
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=34.43 E-value=2.1e+02 Score=24.85 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=39.6
Q ss_pred cCcHHHHHHHHHcCCCceeeccc-CCc-cccCCCCCCChhhhHHHHHHHHHHHHcC-CceeEee
Q 015785 80 HKYKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTL 140 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~-W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~G-i~p~~tL 140 (400)
..-++.++.|++.|++.+.+|++ ++. +...-....+ ++.+.+.++.+++.| +.+-+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34578899999999999999985 543 2211011122 578889999999999 6555443
No 156
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=33.99 E-value=76 Score=30.19 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.8
Q ss_pred CcHHHHHHHHHcCCCceeecc
Q 015785 81 KYKEDVKLMADTGLDAYRFSI 101 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si 101 (400)
-|+|-+++.|++|++.+-+||
T Consensus 19 sW~erl~~AK~~GFDFvEmSv 39 (287)
T COG3623 19 SWLERLALAKELGFDFVEMSV 39 (287)
T ss_pred CHHHHHHHHHHcCCCeEEEec
Confidence 478888999999999888876
No 157
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=33.73 E-value=79 Score=35.75 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=41.6
Q ss_pred ccCcHHHHHHHHHcCCCceeeccc---------------CCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSIS---------------WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~---------------W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
+....+-+..+++||++++=+|=- +.+|.|. -| +.+-+++++++++++||++|+++-
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-LG-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 344677888999999999866643 3334333 22 345689999999999999999863
No 158
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=32.98 E-value=94 Score=29.21 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=37.3
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCCC--CCCChhhhHHHHHHHHHHHHcCCceeEe-eccCCCc
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVT-LHHFDLP 146 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~~t-L~h~~~P 146 (400)
.++=+++++++|.+.+++...+ . |.+. .+.-....+..+++.+.+.+.|++..+= +.|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 5666789999999998864332 2 2211 1111223455677777788999886663 3455444
No 159
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.84 E-value=1.2e+02 Score=29.12 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=50.7
Q ss_pred CCCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhH
Q 015785 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (400)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l 149 (400)
+.+..+...+-.+.+|++|+..+|-+..=+|--|.+.-.+-++ .++.+-+.+.+.||..+-+.++-.....+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~---gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEE---GLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHH---HHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 4455666777888999999999999985577666532112234 45566667899999999998765554444
No 160
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=32.70 E-value=1.8e+02 Score=29.04 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCceeecc-cCC-ccccCCCCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHhHHhhhCCCCCc
Q 015785 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~~~ 159 (400)
+|.++.++++|++.+-+++ +-+ ++... -|+.. ..+-..+.|+.+++.|+..+ ++|- +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6899999999999777776 443 23222 23321 15567889999999999855 6654 55563
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEecCCc
Q 015785 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (400)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 190 (400)
++.+.|.+-.+.+.+-=-++|..+...=||.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 3345666666655542234444444333444
No 161
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=31.98 E-value=1.7e+02 Score=31.65 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=56.1
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcH----hHHh------
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ----ALED------ 151 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~----~l~~------ 151 (400)
-++|++..++.|++.+|+..+-+.+ +-..+.++.++++|.....++..-..|. .+.+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567789999999999998765544 2245566777777777776664322341 1110
Q ss_pred hh----------CCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 152 EY----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 152 ~~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
+. .|-..| ....+.++.+-++++ ..-...+.|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTP---YAAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCH---HHHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 00 244443 455666666667774 3334678887664
No 162
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.72 E-value=53 Score=31.10 Aligned_cols=61 Identities=7% Similarity=0.013 Sum_probs=39.5
Q ss_pred cccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEe
Q 015785 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (400)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~t 139 (400)
...+++.-+++.+.+|.+.+++........+. ....-+..++.++++.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 34556677899999999999986432211111 11111334677888888999999876543
No 163
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=31.42 E-value=2.4e+02 Score=27.91 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=45.2
Q ss_pred ChhhhHHHHHHHHHHHHcCCceeEeeccC---C--CcHhHHhh-------------h--------C---CCCCchhHHHH
Q 015785 115 NPKGLQYYNNLINELISYGIQPHVTLHHF---D--LPQALEDE-------------Y--------G---GWINRTIVKDF 165 (400)
Q Consensus 115 n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~---~--~P~~l~~~-------------~--------g---g~~~~~~~~~f 165 (400)
|++.+---+++++.|+++|++.++.++-+ + .|..-+.+ | + .|+|++..+.|
T Consensus 59 d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 138 (339)
T cd06604 59 DKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWW 138 (339)
T ss_pred ccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHH
Confidence 33333335789999999999998765422 1 22221110 0 1 36788888887
Q ss_pred HHHHHHHHHHhcCCCce-EEEecCCccc
Q 015785 166 TAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (400)
Q Consensus 166 ~~ya~~~~~~~~d~v~~-w~t~NEp~~~ 192 (400)
.+.-+.+. ..-|+. |.=+|||..+
T Consensus 139 ~~~~~~~~---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 139 GSLYKKFV---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred HHHHHHHh---hCCCceEeecCCCcccc
Confidence 76655544 233554 6889999865
No 164
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=31.40 E-value=2.2e+02 Score=28.93 Aligned_cols=86 Identities=19% Similarity=0.311 Sum_probs=56.0
Q ss_pred HHHHHHHHHc-CCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHhHHhhhCCCCCc-
Q 015785 83 KEDVKLMADT-GLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR- 159 (400)
Q Consensus 83 ~eDi~l~~~l-G~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~~~- 159 (400)
-+|++.+.++ +++ .++++- .|. +... .+.++.+.+.++||++. ++...|..|.+ ++|.+.|+
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH----~~~-d~~~------d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~pD 107 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALH----IPW-DRVE------DYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTHPD 107 (378)
T ss_pred HHHHHHHHhhcCCC-Cceeec----cCC-cccc------CHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCCCC
Confidence 5777888777 555 666652 222 1112 36777888999999998 77776665644 35778876
Q ss_pred -hhHHHHHHHHHHHH---HHhcCC-CceE
Q 015785 160 -TIVKDFTAYADVCF---RQFGDR-VSYW 183 (400)
Q Consensus 160 -~~~~~f~~ya~~~~---~~~~d~-v~~w 183 (400)
++.+.-.++++.+. +.+|.. |..|
T Consensus 108 ~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 108 KRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 45566677777664 777774 4444
No 165
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=31.08 E-value=5.6e+02 Score=25.76 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=75.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC-------------cHhHHhhh--CCCC-----C----chhHHHHH
Q 015785 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL-------------PQALEDEY--GGWI-----N----RTIVKDFT 166 (400)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~-------------P~~l~~~~--gg~~-----~----~~~~~~f~ 166 (400)
.|-++++-+.-++++++.++++|-+.++=|+|-.- |..+.... .... + .++++.|+
T Consensus 74 ~~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (370)
T cd02929 74 ARLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYV 153 (370)
T ss_pred cCcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHH
Confidence 46778889999999999999999999999999542 10000000 0000 0 13677787
Q ss_pred HHHHHHHHHhcCCCceEEEecCCccccccCcccCCC-CCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcC
Q 015785 167 AYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQ 245 (400)
Q Consensus 167 ~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~ 245 (400)
+=|+.+.+.=-|-|. +.+-.||+...| .|...... . ..|- .+-|-..--...++.+|+..+
T Consensus 154 ~AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~N~Rt-D-~yGG-------slenR~Rf~~eii~aIr~~vg 215 (370)
T cd02929 154 DAALRARDAGFDIVY---------VYAAHGYLPLQFLLPRYNKRT-D-EYGG-------SLENRARFWRETLEDTKDAVG 215 (370)
T ss_pred HHHHHHHHcCCCEEE---------EcccccchHHHhhCccccCCc-c-ccCC-------ChHhhhHHHHHHHHHHHHHcC
Confidence 766665543222221 335567877655 33211100 0 0111 122333334667888888754
Q ss_pred -CCeEEEEeeCCcccc
Q 015785 246 -RGYIGVNIFAFGLLP 260 (400)
Q Consensus 246 -~~~IG~~~~~~~~~P 260 (400)
+..||+-++.....|
T Consensus 216 ~~~~v~vRls~~~~~~ 231 (370)
T cd02929 216 DDCAVATRFSVDELIG 231 (370)
T ss_pred CCceEEEEecHHHhcC
Confidence 667888877655444
No 166
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=31.02 E-value=3.4e+02 Score=24.12 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCC
Q 015785 160 TIVKDFTAYADVCFRQFGDRV 180 (400)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~d~v 180 (400)
...+....|++.+-++.|-++
T Consensus 100 ~~~~~~~~f~~~v~~~~G~~~ 120 (184)
T cd06525 100 ELNDYVLRFIEEFEKLSGLKV 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCCe
Confidence 344556666666666655543
No 167
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.90 E-value=1.4e+02 Score=25.63 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcC
Q 015785 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGD 178 (400)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d 178 (400)
.+=+.-+++.|++.|++|++.+.=. -+.|. .|-|. +++..+.|.+=.+..++++|=
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~Pv-Ng~wy--dytG~-~~~~r~~~y~kI~~~~~~~gf 90 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPV-NGKWY--DYTGL-SKEMRQEYYKKIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHH--HHTT---HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHcCCceEEEecCC-cHHHH--HHhCC-CHHHHHHHHHHHHHHHHHCCC
Confidence 5557889999999999999988310 12454 24554 455667777777777777765
No 168
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=30.88 E-value=4.7e+02 Score=24.78 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCC--CceeecccCCccccCCCC--CCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCC
Q 015785 83 KEDVKLMADTGL--DAYRFSISWSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~W~ri~p~g~g--~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~ 158 (400)
.+-++.+++.|+ +++=+.+.|..-. +.- .+|++.+.-.+++|+.|+++|++.++.++ |.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~----------- 89 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY----------- 89 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh-----------
Confidence 444555666444 3555666665432 223 45666666678999999999999998774 31
Q ss_pred chhHHHHHHHHHHHHHHhcCCCce-EEEecCCccc
Q 015785 159 RTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~-w~t~NEp~~~ 192 (400)
+.+.|.+..+.+. +..-|+. |+=+|||...
T Consensus 90 --v~~w~~~~~~~~~--~~~Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 90 --IREWWAEVVKKLL--VSLGVDGFWTDMGEPSPG 120 (265)
T ss_pred --HHHHHHHHHHHhh--ccCCCCEEeccCCCCCcC
Confidence 1344544444332 2223544 6899999754
No 169
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=30.76 E-value=1.8e+02 Score=29.83 Aligned_cols=107 Identities=21% Similarity=0.333 Sum_probs=63.9
Q ss_pred cHHHHHHHHHcCCC--ceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccC---CCc---HhHHhh-
Q 015785 82 YKEDVKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLP---QALEDE- 152 (400)
Q Consensus 82 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~---~~P---~~l~~~- 152 (400)
..+-++.+++.|+- ++=+...|..-.. .-.+|++.+.-.+++++.|+++|++.++.++-+ +.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 45667777777765 4445555655322 235677667778999999999999988876632 222 111100
Q ss_pred --h-----CC----------------CCCchhHHHHHHHHHHHHHHhcCCCce-EEEecCCccc
Q 015785 153 --Y-----GG----------------WINRTIVKDFTAYADVCFRQFGDRVSY-WTTVNEPNAF 192 (400)
Q Consensus 153 --~-----gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v~~-w~t~NEp~~~ 192 (400)
+ .| |.+++..+.|.+..+.+++.+| |+. |.=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG--VDGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST---SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC--CceEEeecCCcccc
Confidence 0 12 6788888888777777666543 444 7899999864
No 170
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=30.41 E-value=1.5e+02 Score=30.46 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=40.2
Q ss_pred cHHHHHHHHHcCCCceeecc-cCC-ccccC-CCCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCc
Q 015785 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPN-GRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLP 146 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P 146 (400)
-+|.+++|+++|++.+.+++ +-+ ++... +.+. + .+-..+.|+.+++.|+..+ ++|- +++|
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~-~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ-K---RADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 46889999999999777766 332 22222 2222 3 5567889999999999864 5553 5566
No 171
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=30.20 E-value=94 Score=32.33 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCceeecc-cCCc-cccC-CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCc
Q 015785 83 KEDVKLMADTGLDAYRFSI-SWSR-LIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~W~r-i~p~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P 146 (400)
+|.+++|+++|++.+-+++ +-+. +... ++| .+ ++.+.+.++.++++||.+.+++- +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999888887 3332 2211 112 33 56688999999999999887764 3445
No 172
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=29.83 E-value=53 Score=34.07 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=46.7
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCC---CCCCChhhhHHHHHHHHHHHHcCCc-eeEeeccCCCcHhHHhhhCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~Gi~-p~~tL~h~~~P~~l~~~~gg~~ 157 (400)
-+|.+++|+++|++.+-+++ .-.-|+- -|.. ...+...+.|+.+++.|++ +-++|- +++|.
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlPg---------- 215 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLPH---------- 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCCC----------
Confidence 47999999999999666655 2222220 1221 1255678899999999997 445553 45552
Q ss_pred CchhHHHHHHHHHHHHH
Q 015785 158 NRTIVKDFTAYADVCFR 174 (400)
Q Consensus 158 ~~~~~~~f~~ya~~~~~ 174 (400)
++.+.|.+-.+.+.+
T Consensus 216 --qt~e~~~~tl~~~~~ 230 (453)
T PRK13347 216 --QTVESFRETLDKVIA 230 (453)
T ss_pred --CCHHHHHHHHHHHHh
Confidence 234555555555553
No 173
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=29.74 E-value=1.5e+02 Score=29.91 Aligned_cols=94 Identities=15% Similarity=0.251 Sum_probs=60.0
Q ss_pred cHHHHHHHHHcCCCceeecc-cCCc-cccCCCCCCChhhhHHHHHHHHHHHHcCCc-eeEeeccCCCcHhHHhhhCCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~-p~~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-++.++.++++|++.+.+++ +-+. +.-. -|+.. ..+-..+.|+.+++.|+. +-++|- +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGvQS~~~~~L~~-l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGVQTFDDPLLKL-LGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEccccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 36889999999999665555 2211 1111 12221 144567788999999997 455653 55553
Q ss_pred chhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
++.+.|.+-.+.+.+.=-++|..+...=||..
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT 198 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHT 198 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCC
Confidence 34567777777766543467888887788875
No 174
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=29.54 E-value=87 Score=28.93 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=31.6
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeecc
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h 142 (400)
....++||+.++++|++.+=|+.- -+ +|.+|.+ ..+++++.+. |+-..+|
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L----~~--dg~iD~~---~~~~Li~~a~-----~~~~tFH 120 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGAL----TE--DGEIDEE---ALEELIEAAG-----GMPVTFH 120 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--B----ET--TSSB-HH---HHHHHHHHHT-----TSEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeE----CC--CCCcCHH---HHHHHHHhcC-----CCeEEEe
Confidence 344678999999999999999973 23 5889954 4567777764 4444456
No 175
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.63 E-value=76 Score=30.20 Aligned_cols=60 Identities=7% Similarity=0.058 Sum_probs=39.1
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCC-CCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
-.++++-+++++++|.+.++++-. +..+... .+.-...++.++++++.+.++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 445778899999999999998521 1111100 01112346677888899999999877643
No 176
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.57 E-value=2.7e+02 Score=27.92 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=55.3
Q ss_pred cHHHHHHHHHcCCCceeecc-cCC-ccccCCCCCCChhhhHHHHHHHHHHHHcCCc-eeEeeccCCCcHhHHhhhCCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~-p~~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-+|.+++|+++|++.+-+++ +-+ ++... -|+.. ..+...+.++.+++.|+. +.++|- +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 46889999999999666666 322 12211 12211 245677889999999998 656653 45552
Q ss_pred chhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
++.+.|.+=.+.+.+.=-+++..+...=||..
T Consensus 172 -qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT 203 (375)
T PRK05628 172 -ESDDDWRASLDAALEAGVDHVSAYALIVEDGT 203 (375)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCC
Confidence 23455555555544422355555544446654
No 177
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=28.46 E-value=2.1e+02 Score=30.26 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee----ccCCCcHhHHhh------
Q 015785 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHFDLPQALEDE------ 152 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL----~h~~~P~~l~~~------ 152 (400)
+.|++..++.|++.+|+....+.+ +-.+..++.+++.|.....++ .+-+.|..+.+.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 457899999999999998866554 223344455555555442222 122222221110
Q ss_pred ----------hCCCCCchhHHHHHHHHHHHHHHhc-CCCceEEEecCCcc
Q 015785 153 ----------YGGWINRTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPNA 191 (400)
Q Consensus 153 ----------~gg~~~~~~~~~f~~ya~~~~~~~~-d~v~~w~t~NEp~~ 191 (400)
=.|-..| ....+.++.+-++++ +..-...+.|-..+
T Consensus 167 ~Gad~I~IkDtaGll~P---~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 167 MGADSICIKDMAALLKP---QPAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred cCCCEEEeCCCccCCCH---HHHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 0344554 455666666677776 33334678887664
No 178
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=28.28 E-value=1.5e+02 Score=27.48 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=54.0
Q ss_pred HHHHHH----HHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCC
Q 015785 83 KEDVKL----MADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 83 ~eDi~l----~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~ 157 (400)
++|++. +++.|++.+|+.++=+.....- -+.--++.++...+.++.+++.|+++.+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 455555 4569999999998755533220 2333345688999999999999999987775422
Q ss_pred CchhHHHHHHHHHHHHHH
Q 015785 158 NRTIVKDFTAYADVCFRQ 175 (400)
Q Consensus 158 ~~~~~~~f~~ya~~~~~~ 175 (400)
+-..+.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 12346777777777665
No 179
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=28.12 E-value=77 Score=33.46 Aligned_cols=101 Identities=18% Similarity=0.323 Sum_probs=50.3
Q ss_pred HHcCCCceeecccCCccccC------CCC-----CCCh--hhhHHHHHHHHHHHHc--CCceeEeeccCCCcHhHHhh--
Q 015785 90 ADTGLDAYRFSISWSRLIPN------GRG-----PVNP--KGLQYYNNLINELISY--GIQPHVTLHHFDLPQALEDE-- 152 (400)
Q Consensus 90 ~~lG~~~~R~si~W~ri~p~------g~g-----~~n~--~~~~~y~~~i~~l~~~--Gi~p~~tL~h~~~P~~l~~~-- 152 (400)
+-+|++..|..|.=+..-.. .++ .++. +..++--.+|+++++. +|+.+.+- |..|.|+-..
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCc
Confidence 34899999988833222211 111 1221 1122223466665553 35666554 8999998322
Q ss_pred h--CCCCC----chhHHHHHHHHHHHHHHhcCC-CceE--EEecCCccc
Q 015785 153 Y--GGWIN----RTIVKDFTAYADVCFRQFGDR-VSYW--TTVNEPNAF 192 (400)
Q Consensus 153 ~--gg~~~----~~~~~~f~~ya~~~~~~~~d~-v~~w--~t~NEp~~~ 192 (400)
+ +|.+. ++..+.|++|-.+.++.|+.. |+.| .+-|||...
T Consensus 188 ~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 188 MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 1 24443 356678888888888888764 6666 588999853
No 180
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=27.91 E-value=26 Score=33.45 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=41.5
Q ss_pred HHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCCC
Q 015785 129 LISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAP 203 (400)
Q Consensus 129 l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~ 203 (400)
+.+..+.|+++||||+.=..+ +-+....+.++.+.+=++.--.++-.+-..|---....+.+..||....++
T Consensus 77 ~~a~~~~pl~SlHH~~~~~Pi---fP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 77 LEAHPLAPLVSLHHWDSVDPI---FPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eecCCCCceeeeeehhhcccc---CCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 444568999999999952222 345555566777776555444444333223332333344455788877664
No 181
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=27.60 E-value=79 Score=34.76 Aligned_cols=64 Identities=22% Similarity=0.464 Sum_probs=43.5
Q ss_pred ccCcHHH-HHHHHHcCCCceeec-c-cC-Ccc-----------ccCCC-CCCC-hhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 79 YHKYKED-VKLMADTGLDAYRFS-I-SW-SRL-----------IPNGR-GPVN-PKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~s-i-~W-~ri-----------~p~g~-g~~n-~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
|.-+.|+ +..+|+||.|++-+= | +- +.. -|.+. |..+ +..+.-++.+|+++.+.||++++++-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8788887 999999999998742 1 22 122 12210 1111 22266789999999999999999876
Q ss_pred c
Q 015785 142 H 142 (400)
Q Consensus 142 h 142 (400)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 182
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=27.40 E-value=4.2e+02 Score=27.72 Aligned_cols=94 Identities=19% Similarity=0.425 Sum_probs=57.9
Q ss_pred cHHH-HHHHHHcCCCceeec-------ccCCc-cccCCC--CCC---------ChhhhHHHHHHHHHHHHcCCceeEeec
Q 015785 82 YKED-VKLMADTGLDAYRFS-------ISWSR-LIPNGR--GPV---------NPKGLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 82 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~p~g~--g~~---------n~~~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
++.| ++++|+|.+..+|+. -.|.. |-|..+ -.+ |+=| ..++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4555 688999999999964 24554 334311 011 2222 46899999999999999985
Q ss_pred cCCCcHhHHhhhCCCCCchhHHHHHHHHHH--------HHHHhcC----CCceEEEecCCc
Q 015785 142 HFDLPQALEDEYGGWINRTIVKDFTAYADV--------CFRQFGD----RVSYWTTVNEPN 190 (400)
Q Consensus 142 h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~--------~~~~~~d----~v~~w~t~NEp~ 190 (400)
= |. ...+....|.+||.. .=+..|. .||+|.+=||-+
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 2 11 222344556665532 2233343 399999999964
No 183
>PRK07094 biotin synthase; Provisional
Probab=26.71 E-value=1.1e+02 Score=29.93 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHcCCCceeeccc-C-CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 81 KYKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
.-+|+++.|+++|++.+-++++ - .++...-....+ .+.+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 4589999999999999988884 2 234333111222 5678889999999999865544
No 184
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.38 E-value=1.2e+02 Score=28.91 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=32.7
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHH
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINEL 129 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l 129 (400)
....++||+.++++|++.+=|++- -| +|.+|.+ ...++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L----~~--dg~vD~~---~~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL----DV--DGHVDMP---RMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE----CC--CCCcCHH---HHHHHHHHh
Confidence 445788999999999999999974 23 5899955 456777776
No 185
>PRK06256 biotin synthase; Validated
Probab=26.29 E-value=93 Score=30.64 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHcCCCceeecccCCc-cccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 81 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
.-+|.++.||++|++.+-++++=++ +.+.-...- .++...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 5678999999999999888763132 333311111 25667789999999999865443
No 186
>PLN02411 12-oxophytodienoate reductase
Probab=25.83 E-value=5.1e+02 Score=26.37 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=73.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC---cHhH--------------H------hhhC---CCCC------
Q 015785 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL---PQAL--------------E------DEYG---GWIN------ 158 (400)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~---P~~l--------------~------~~~g---g~~~------ 158 (400)
.|-++.+-+.-++++.+.++++|-+.++=|+|-.- |.+. . ...+ ....
T Consensus 78 ~gi~~d~~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~ 157 (391)
T PLN02411 78 PGIYSDEQVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALET 157 (391)
T ss_pred CccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCH
Confidence 35668888999999999999999999999999431 1100 0 0000 0011
Q ss_pred ---chhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCC-CCCCCCCccccCCCCCCChhh-HHHHHHHHHH
Q 015785 159 ---RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQRCSSINHCSRGNSSTEPY-ITVHHVLLAH 233 (400)
Q Consensus 159 ---~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~llAh 233 (400)
.++++.|++=|+.+.+.==|-| .+.+-+||+...| .|..... ++.| -..-|-++--
T Consensus 158 ~eI~~ii~~f~~AA~rA~~AGFDGV---------EIH~AhGYLl~QFLSp~tN~R----------tDeYGGSlENR~RF~ 218 (391)
T PLN02411 158 SEIPEVVEHYRQAALNAIRAGFDGI---------EIHGAHGYLIDQFLKDGINDR----------TDEYGGSIENRCRFL 218 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEE---------EEccccchHHHHhCCCccCCC----------CCcCCCCHHHHhHHH
Confidence 1366777776666554222333 2456678887765 3421111 1111 0123344445
Q ss_pred HHHHHHHHHhcCCCeEEEEeeC
Q 015785 234 ASVARLYRKKYQRGYIGVNIFA 255 (400)
Q Consensus 234 a~a~~~~r~~~~~~~IG~~~~~ 255 (400)
...++.+|+..+...||+-++.
T Consensus 219 lEIi~aVr~~vg~d~vgvRiS~ 240 (391)
T PLN02411 219 MQVVQAVVSAIGADRVGVRVSP 240 (391)
T ss_pred HHHHHHHHHHcCCCeEEEEEcc
Confidence 6678888887654469988774
No 187
>PRK10426 alpha-glucosidase; Provisional
Probab=25.82 E-value=5e+02 Score=28.32 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCCceeecc-cCCccccCCCC-------CCChhhhHHHHHHHHHHHHcCCceeEeeccC---CCcHhHHhh
Q 015785 84 EDVKLMADTGLDAYRFSI-SWSRLIPNGRG-------PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE 152 (400)
Q Consensus 84 eDi~l~~~lG~~~~R~si-~W~ri~p~g~g-------~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~---~~P~~l~~~ 152 (400)
+-++.+++.|+..==+-+ .|.......-| .+|.+-+.-.+++|+.|++.|++.++.+.-+ +.|..-+.+
T Consensus 225 ~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~ 304 (635)
T PRK10426 225 KKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAA 304 (635)
T ss_pred HHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHH
Confidence 446777887765333322 67654321111 3466666667899999999999988876532 233321111
Q ss_pred ---h------C---------------CCCCchhHHHHHHHHHHHHHHhcCCCceE-EEecCC
Q 015785 153 ---Y------G---------------GWINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEP 189 (400)
Q Consensus 153 ---~------g---------------g~~~~~~~~~f~~ya~~~~~~~~d~v~~w-~t~NEp 189 (400)
| | .++|++..+.|.+..+..+...| |+.| .=+||+
T Consensus 305 ~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 305 EKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 0 1 16788888888877665444454 6665 788994
No 188
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.48 E-value=3.1e+02 Score=25.89 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=36.8
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHc-CCceeE
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHV 138 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~-Gi~p~~ 138 (400)
..+++-+++++++|++.+=+.+......+. ...+.+ ..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~--~~~~~~---~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS--RPLKKE---RAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC--CCCCHH---HHHHHHHHHHHcCCCcEEE
Confidence 678999999999999999888866544333 122333 456666677777 666544
No 189
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=24.92 E-value=88 Score=26.10 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCceeeccc-CCcc-ccCCCCCCChhhhHHHHHHHHHHHHcCCce
Q 015785 83 KEDVKLMADTGLDAYRFSIS-WSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQP 136 (400)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-W~ri-~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p 136 (400)
++.++.+++.|++.+++|++ -+.- ..+--+ ....++..-+.++.|.++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999994 2221 111001 1234677889999999999996
No 190
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.85 E-value=2.1e+02 Score=27.74 Aligned_cols=105 Identities=16% Similarity=0.297 Sum_probs=55.4
Q ss_pred HHHHHHHcCC--CceeecccCCccc--c---CC--CCCCChhhhHHHHHHHHHHHHcCCceeEeeccC-CC-c-Hh----
Q 015785 85 DVKLMADTGL--DAYRFSISWSRLI--P---NG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHF-DL-P-QA---- 148 (400)
Q Consensus 85 Di~l~~~lG~--~~~R~si~W~ri~--p---~g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~-~~-P-~~---- 148 (400)
=++.+++.|+ +++=+.+.|..-- + ++ .=.+|++.+.-..++|+.|+++|++.++.++-. .. | ..
T Consensus 30 v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~ 109 (292)
T cd06595 30 LMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPE 109 (292)
T ss_pred HHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHH
Confidence 3444444443 4555556664311 0 11 113455555667889999999999988877532 11 1 11
Q ss_pred HHhhhC-----------CCCCchhHHHHHHHHHHHHHHhc-CCCc-eEEEecCCccc
Q 015785 149 LEDEYG-----------GWINRTIVKDFTAYADVCFRQFG-DRVS-YWTTVNEPNAF 192 (400)
Q Consensus 149 l~~~~g-----------g~~~~~~~~~f~~ya~~~~~~~~-d~v~-~w~t~NEp~~~ 192 (400)
+.+..+ .++||+..+.| .+.+.+.+- .-|+ +|.=+|||..+
T Consensus 110 ~~~~~~~~~~~~~~~~~D~tnp~a~~~w---~~~~~~~~~~~Gidg~W~D~~E~~~~ 163 (292)
T cd06595 110 MAKALGVDPATEGPILFDLTNPKFMDAY---FDNVHRPLEKQGVDFWWLDWQQGNRT 163 (292)
T ss_pred HHHhcCCCcccCCeEEecCCCHHHHHHH---HHHHHHHHHhcCCcEEEecCCCCccc
Confidence 111111 24565555444 444444432 2355 57889999754
No 191
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=24.82 E-value=6.6e+02 Score=24.53 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcC
Q 015785 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYG 133 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~G 133 (400)
++.+.+.|++.+-+.-+|+.+.+. ..|++=.+.+..++++.++++|
T Consensus 183 ~~~~ieaGad~i~i~d~~~~~lsp--~~f~ef~~P~~k~i~~~i~~~~ 228 (335)
T cd00717 183 LKAQIEAGAQAVQIFDSWAGALSP--EDFEEFVLPYLKRIIEEVKKRL 228 (335)
T ss_pred HHHHHHhCCCEEEEeCcccccCCH--HHHHHHHHHHHHHHHHHHHHhC
Confidence 344567899988655567776643 4566666788899999999984
No 192
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=24.76 E-value=2.1e+02 Score=28.36 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=60.2
Q ss_pred cCcHHHHHHHHHcCCCceeecc--cCCcccc-CC------CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC------
Q 015785 80 HKYKEDVKLMADTGLDAYRFSI--SWSRLIP-NG------RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD------ 144 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si--~W~ri~p-~g------~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~------ 144 (400)
.+.++=++++++.|+|++=+.+ ++-.|.= .. .|.. ...+.=..++++.|+++||.||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 3577889999999999999988 4444431 10 1111 11134468899999999999998766543
Q ss_pred -CcHhHHhhhC----------CCCCc---hhHHHHHHHHHHHHHH
Q 015785 145 -LPQALEDEYG----------GWINR---TIVKDFTAYADVCFRQ 175 (400)
Q Consensus 145 -~P~~l~~~~g----------g~~~~---~~~~~f~~ya~~~~~~ 175 (400)
.|.|...+-+ .|.+| ++.+.-.+.|+.+++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3444432111 27765 5666666777776643
No 193
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=24.31 E-value=1.6e+02 Score=28.79 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcc
Q 015785 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYD 198 (400)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~ 198 (400)
++-+.+.++.++++||++.+++- +++|. +..+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 55678899999999999777654 45552 234666666666655444667777777777754443344
Q ss_pred cCCCC
Q 015785 199 YGIAP 203 (400)
Q Consensus 199 ~g~~~ 203 (400)
.|.+.
T Consensus 229 ~g~~~ 233 (302)
T TIGR01212 229 KGELK 233 (302)
T ss_pred cCCCC
Confidence 45544
No 194
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=24.25 E-value=2.9e+02 Score=25.02 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=39.9
Q ss_pred CcCCCcccCcHHHHHHHHHcCCCceeecccCCccccC--C---CCCCCh---hhhHH---HHHHHHHHHHcCCceeEeec
Q 015785 73 DIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPN--G---RGPVNP---KGLQY---YNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 73 ~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~--g---~g~~n~---~~~~~---y~~~i~~l~~~Gi~p~~tL~ 141 (400)
|.|=.|| |+|.++.++++|++...+|-.=....|+ + +|..+. +.|.. ..+.|.+..++| +|++.++
T Consensus 6 d~aF~f~--y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g-~pilgIC 82 (198)
T cd03130 6 DEAFNFY--YPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESG-GPIYAEC 82 (198)
T ss_pred cCccccc--cHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcC-CCEEEEc
Confidence 3455566 8999999999999888876520111121 1 233333 23322 344455556677 4899988
Q ss_pred c
Q 015785 142 H 142 (400)
Q Consensus 142 h 142 (400)
+
T Consensus 83 g 83 (198)
T cd03130 83 G 83 (198)
T ss_pred c
Confidence 6
No 195
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.14 E-value=2.4e+02 Score=29.24 Aligned_cols=77 Identities=10% Similarity=0.280 Sum_probs=47.3
Q ss_pred cHHHHHHHHHcCCCceeeccc-CC-ccccCCCCCCChhhhHHHHHHHHHHHHcCC-ceeEeeccCCCcHhHHhhhCCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNNLINELISYGI-QPHVTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi-~p~~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-+|.+++|+++|++.+.++++ -+ ++.-. -|.. ...+-..+.++.+++.|+ .+-++|. +++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~-l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg----------- 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKA-VNRI--QPFEFTFALVEAARELGFTSINIDLI-YGLPK----------- 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE-ccCCC-----------
Confidence 478999999999997777762 22 12111 1221 125567789999999999 4555553 45553
Q ss_pred chhHHHHHHHHHHHHH
Q 015785 159 RTIVKDFTAYADVCFR 174 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~ 174 (400)
++.+.|.+-.+.+.+
T Consensus 215 -qt~e~~~~~l~~~~~ 229 (453)
T PRK09249 215 -QTPESFARTLEKVLE 229 (453)
T ss_pred -CCHHHHHHHHHHHHh
Confidence 234555555555554
No 196
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.12 E-value=71 Score=33.11 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=46.6
Q ss_pred cHHHHHHHHHcCCCceeeccc-CC-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCc-eeEeeccCCCcHhHHhhhCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~g~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~~tL~h~~~P~~l~~~~gg~~ 157 (400)
-+|.+++|+++|++.+-++++ =+ ++... -+. .+ .+.+.+.++.+++.|++ +-++|. +++|.
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~-l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------- 214 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQA-VNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK---------- 214 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHH-hCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC----------
Confidence 378899999999996666652 22 12211 122 23 56678999999999997 445542 45553
Q ss_pred CchhHHHHHHHHHHHHH
Q 015785 158 NRTIVKDFTAYADVCFR 174 (400)
Q Consensus 158 ~~~~~~~f~~ya~~~~~ 174 (400)
++.+.|.+-.+.+.+
T Consensus 215 --qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 --QTKESFAKTLEKVAE 229 (455)
T ss_pred --CCHHHHHHHHHHHHh
Confidence 234555555555444
No 197
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.91 E-value=3.4e+02 Score=27.38 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=59.5
Q ss_pred cHHHHHHHHHcCCCceeecc-cCC-ccccCCCCCCChhhhHHHHHHHHHHHHcCCcee-EeeccCCCcHhHHhhhCCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-+|.++.|+++|++.+-++| +-+ ++... -|... ..+-..+.++.+++.|++++ ++|- +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~-l~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg----------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKR-LGRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD----------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 35999999999999666666 222 12222 12221 24556778999999999875 5553 56663
Q ss_pred chhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
++.+.|.+-.+.+.+.=-+++..+...=||+.
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23566666666666544467777766666653
No 198
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=23.80 E-value=2e+02 Score=25.91 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=45.6
Q ss_pred ccCcHHHHHHHHHcCCCceeecc--cCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCC
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL 145 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si--~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~ 145 (400)
...|.+-++...+.|.+.+|+.- .|.. .. ..+.+..|+..+|.+.... |+..|+.||.
T Consensus 104 i~~~~~~~~~a~~~G~~~lRv~ge~~w~~-----~~--~~~~l~~yE~~ln~~~~~~--~~~~lC~Yd~ 163 (191)
T PF14417_consen 104 IAFWRAALEQALAEGYRGLRVIGEMTWAL-----RS--GWEELLRYEALLNRLFAEH--PFTALCAYDR 163 (191)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEechhhc-----cc--cHHHHHHHHHHHHHHhcCC--CEEEEeccch
Confidence 34466667888888999999986 4542 22 6778999999999999888 9999988773
No 199
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.74 E-value=79 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCce
Q 015785 122 YNNLINELISYGIQP 136 (400)
Q Consensus 122 y~~~i~~l~~~Gi~p 136 (400)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467788888899987
No 200
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.60 E-value=2.3e+02 Score=31.28 Aligned_cols=50 Identities=22% Similarity=0.449 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHH
Q 015785 122 YNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVC 172 (400)
Q Consensus 122 y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~ 172 (400)
+..+|+.|+++|+..=+...|-.++.-+..+||. +....++.=.+|++.|
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999888875 3334555555555554
No 201
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=23.53 E-value=1.5e+02 Score=25.98 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHcCCcee--EeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecC
Q 015785 120 QYYNNLINELISYGIQPH--VTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNE 188 (400)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~--~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NE 188 (400)
+=|+++++.|++.++..- ..+.+=-+|..+.++- =-.|=...++|..|-+++++-++.|++.-.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~ea-VPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKEA-VPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhhc-CCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 459999999999986543 1233444676665431 1112234689999999999999999877777777
No 202
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.27 E-value=53 Score=29.10 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=40.4
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEe
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVT 139 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~t 139 (400)
....++-+++++.+|++.+++...+-...+.. ...--....+.++++.+.+.++|+++.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 55678889999999999999997641111110 00111234677888888888999776543
No 203
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=23.26 E-value=3.6e+02 Score=25.82 Aligned_cols=59 Identities=15% Similarity=0.115 Sum_probs=41.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhcCCCceE
Q 015785 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYW 183 (400)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w 183 (400)
+|.+|.+ -+++.++.+.+.|+..++.+-+-. -+ ..-+.+...+..+.+++.-+++++.+
T Consensus 13 ~g~iD~~---~~~~~i~~l~~~Gv~Gi~~~GstG----------E~-~~Ls~~Er~~~~~~~~~~~~~~~~vi 71 (285)
T TIGR00674 13 DGSVDFA---ALEKLIDFQIENGTDAIVVVGTTG----------ES-PTLSHEEHKKVIEFVVDLVNGRVPVI 71 (285)
T ss_pred CCCcCHH---HHHHHHHHHHHcCCCEEEECccCc----------cc-ccCCHHHHHHHHHHHHHHhCCCCeEE
Confidence 5899955 478999999999999998875411 11 11235667777788888877777644
No 204
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.20 E-value=1.5e+02 Score=26.79 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=46.4
Q ss_pred CcCCCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEe
Q 015785 73 DIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (400)
Q Consensus 73 ~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~t 139 (400)
.+|.|.+-.-...+..+..+.++.++++.++-+-... |.......+.+++.+++.|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQT-----DPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhcc-----ChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 4577776666777888899999999998876554333 2233566888999999999999876
No 205
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=22.90 E-value=2.1e+02 Score=21.95 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 87 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 87 ~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
+.++.+|+.++|-| . +..+.+-+.+++..++ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS--------s-----~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS--------S-----SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC--------C-----CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 56799999999999 2 2334667889999998 888777774
No 206
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.76 E-value=2.3e+02 Score=26.74 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=40.7
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhc
Q 015785 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (400)
Q Consensus 107 ~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 177 (400)
.|-|.|.+| |..+++.|++.|-+..+++.+|.-+. . ...+.+....+|.+.++++.|
T Consensus 226 ~p~G~G~id------~~~~~~~L~~~gy~G~~~~E~~~~~~--~------~~~~~~~~~~~~l~~~~~~~~ 282 (284)
T PRK13210 226 VPFGEGCVD------FVGIFKTLKELNYRGPFLIEMWTEKA--E------EPRAEIKQARRFLEPLMEEAG 282 (284)
T ss_pred ccCCCcccC------HHHHHHHHHHcCCCceEEEEEecCcc--c------CHHHHHHHHHHHHHHHHHHhc
Confidence 354678888 67899999999999889988764321 0 122456777888888777764
No 207
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=22.75 E-value=42 Score=29.63 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=30.6
Q ss_pred ccccCCCChhHHHHhcccCCCCCHHHHhhhcCCCcEEEeeeeee
Q 015785 285 PLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYI 328 (400)
Q Consensus 285 p~~~G~YP~~~~~~l~~~lp~~t~~d~~~ik~~~DFiGiNYYt~ 328 (400)
..+.|+..+.+...+.+ ..+.|.|...|..++||+.++=++.
T Consensus 72 avl~Gkv~EqlaP~lp~--F~ynP~D~RFlG~PVD~IvF~Gls~ 113 (156)
T PF10107_consen 72 AVLKGKVSEQLAPFLPE--FPYNPKDARFLGSPVDFIVFDGLSD 113 (156)
T ss_pred HHHcchhHHHhhhccCC--CCCChhhheecCCCceEEEEcCCCC
Confidence 35677765555444311 2468999999999999999999976
No 208
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=22.43 E-value=2.3e+02 Score=30.14 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=63.3
Q ss_pred cHHHHHHHHHcCCCceeeccc--CCccccC-CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSIS--WSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~--W~ri~p~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-+|.+++|+++|++.+-+++. -.++.-. ++|. + .+-..+.++.+++.|+++.+.|- +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRgh-t---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg----------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRGH-T---VRDVVEATRLLRDAGLKVVYHIM-PGLPG----------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCeEEEEee-cCCCC-----------
Confidence 368899999999987777762 2223322 2221 2 45567888999999998766664 55552
Q ss_pred chhHHHHHHHHHHHHH--Hhc-CCCceEEEecCCccccccCcccCCCCC
Q 015785 159 RTIVKDFTAYADVCFR--QFG-DRVSYWTTVNEPNAFANLGYDYGIAPP 204 (400)
Q Consensus 159 ~~~~~~f~~ya~~~~~--~~~-d~v~~w~t~NEp~~~~~~gy~~g~~~p 204 (400)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|......-|..|.|.|
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 224555555566664 343 556666555455543333355555554
No 209
>PTZ00445 p36-lilke protein; Provisional
Probab=22.29 E-value=1.5e+02 Score=27.69 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCceeEeeccCCCcHhHHh-hhCCCCCch---------hHHHHHHHHHHHH
Q 015785 120 QYYNNLINELISYGIQPHVTLHHFDLPQALED-EYGGWINRT---------IVKDFTAYADVCF 173 (400)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~-~~gg~~~~~---------~~~~f~~ya~~~~ 173 (400)
+.-+.+++.|++.||+.+++= ||.- +.. .-|||.++. ..+.|..+.+.+-
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~DnT--lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDLT--MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chhh--hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 345788999999999999862 2321 111 238999887 4555666555543
No 210
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.80 E-value=1.3e+02 Score=28.07 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=51.9
Q ss_pred ccCcHHHHHHHHHcCCCceeecc-cCCcc------ccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHh
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSI-SWSRL------IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si-~W~ri------~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~ 151 (400)
-+..++=+.-+-+.|----.=+| +|||. .+++.|.+...+...+--+|+..+++|++-++|..--.++.-|
T Consensus 76 P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril-- 153 (209)
T COG3916 76 PYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERIL-- 153 (209)
T ss_pred cchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHH--
Confidence 34556666666663333333254 88887 4555677888889999999999999999999998643333333
Q ss_pred hhCCCC
Q 015785 152 EYGGWI 157 (400)
Q Consensus 152 ~~gg~~ 157 (400)
+.-||.
T Consensus 154 ~r~Gw~ 159 (209)
T COG3916 154 RRAGWP 159 (209)
T ss_pred HHcCCC
Confidence 125654
No 211
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.76 E-value=1.1e+02 Score=28.89 Aligned_cols=59 Identities=8% Similarity=0.154 Sum_probs=37.5
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCcc-ccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri-~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
.+.++=++.+++||++.+|+. ..... .+. ....-...++.++++.+.+.++||+..+=.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA-GYDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC-Ccccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 345666888999999999974 21111 111 111112345678888889999999877643
No 212
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.62 E-value=2.7e+02 Score=29.37 Aligned_cols=106 Identities=9% Similarity=-0.051 Sum_probs=70.1
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCC-CCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC--CcHhHHhh------
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD--LPQALEDE------ 152 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~--~P~~l~~~------ 152 (400)
-++|++.+.+.|++.+++.++-|.+.-.. -+.--++.++...+.++.+++.|+++.+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 38999999999999999999776654220 1233456788999999999999999998876543 23333211
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhcCCCceEEEecCCcc
Q 015785 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (400)
Q Consensus 153 ~----------gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 191 (400)
. -|.. .+..+.++.+.+.++++ -.--+...|-..+
T Consensus 155 ~Ga~~i~l~DTvG~~---~P~~~~~lv~~l~~~~~-v~l~~H~HND~Gl 199 (488)
T PRK09389 155 AGADRICFCDTVGIL---TPEKTYELFKRLSELVK-GPVSIHCHNDFGL 199 (488)
T ss_pred CCCCEEEEecCCCCc---CHHHHHHHHHHHHhhcC-CeEEEEecCCccH
Confidence 1 2333 34556666666666664 2224677887765
No 213
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=21.55 E-value=1.5e+02 Score=26.89 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCcCCCcccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEe
Q 015785 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (400)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~t 139 (400)
-.+|.|++-.-..++..+.++..+.++++-++-+-... |.......+.++..++..|++++++
T Consensus 146 ~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 146 VRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-----DPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-----ChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 34688888888899999999999999998765543322 2334567888899999999999876
No 214
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=21.37 E-value=1.2e+02 Score=25.94 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=39.4
Q ss_pred cHHHHHHHHHcCCCceeecccCC-ccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEee
Q 015785 82 YKEDVKLMADTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL 140 (400)
-+++++.++++|+..+.+|++-. .-.-.-.. -....++.+-+.|+.+.+.|+...+++
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 48999999999999999999533 22111000 011126677888888999888877765
No 215
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=21.35 E-value=1.4e+02 Score=28.18 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=32.0
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHH
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELI 130 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~ 130 (400)
.-.++||++.+++|++.+-|+.. -. +|.+| ....+++++...
T Consensus 73 ~iM~~DI~~~~~lG~~GVV~G~l-----t~-dg~iD---~~~le~Li~aA~ 114 (241)
T COG3142 73 EIMLEDIRLARELGVQGVVLGAL-----TA-DGNID---MPRLEKLIEAAG 114 (241)
T ss_pred HHHHHHHHHHHHcCCCcEEEeee-----cC-CCccC---HHHHHHHHHHcc
Confidence 34789999999999999999864 22 58999 445567766654
No 216
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=21.24 E-value=8.6e+02 Score=24.55 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=81.3
Q ss_pred CccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC------Cc--------HhHHhhhCC-CCCc---------
Q 015785 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD------LP--------QALEDEYGG-WINR--------- 159 (400)
Q Consensus 104 ~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~------~P--------~~l~~~~gg-~~~~--------- 159 (400)
.++.|..+|-++.+-+.-++++.+.++++|=+.++=|.|-. .| ..+... ++ ...+
T Consensus 67 g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~-~~~~~~pr~mt~~eI~ 145 (363)
T COG1902 67 GRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAP-GGRRATPRELTEEEIE 145 (363)
T ss_pred cccCCCCCccCChhHhHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccc-cCCCCCCccCCHHHHH
Confidence 33566656667766699999999999999999999999966 11 011111 11 2111
Q ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEecCCccccccCcccCCC-CCCCCCCccccCCCCCCChhh-HHHHHHHHHHHHHH
Q 015785 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQRCSSINHCSRGNSSTEPY-ITVHHVLLAHASVA 237 (400)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~p~~~~~~~~~~~~~~~~~~~-~~~~~~llAha~a~ 237 (400)
+++++|++=|+...+.==|-| .+..-+||+...| .|..... ++.| -..-|-+.=-..++
T Consensus 146 ~ii~~f~~AA~rA~~AGFDgV---------EIH~AhGYLi~qFlsp~tN~R----------tD~YGGSlENR~Rf~~EVv 206 (363)
T COG1902 146 EVIEDFARAARRAKEAGFDGV---------EIHGAHGYLLSQFLSPLTNKR----------TDEYGGSLENRARFLLEVV 206 (363)
T ss_pred HHHHHHHHHHHHHHHcCCCEE---------EEeeccchHHHHhcCCccCCC----------CCccCCcHHHHHHHHHHHH
Confidence 366777777776555222333 2567788987655 4432111 1112 12233343345677
Q ss_pred HHHHHhcCCC-eEEEEeeCCcc
Q 015785 238 RLYRKKYQRG-YIGVNIFAFGL 258 (400)
Q Consensus 238 ~~~r~~~~~~-~IG~~~~~~~~ 258 (400)
+++|+.-+.. .||+-++...+
T Consensus 207 ~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 207 DAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHhCCCceEEEEECcccc
Confidence 8888876655 49998887666
No 217
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.13 E-value=2.9e+02 Score=26.90 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=43.1
Q ss_pred cHHHHHHHHHcCCCceeecc----cCCccccC---CCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHh
Q 015785 82 YKEDVKLMADTGLDAYRFSI----SWSRLIPN---GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA 148 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si----~W~ri~p~---g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~ 148 (400)
.++=|+.|+.+|+|.+-+=+ .++. .|. +.|.+.++. ++++++.++++||+++..+ |+|..
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH 85 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLI---QTLGH 85 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecC---CCHHH
Confidence 67889999999999887644 3322 122 146676554 6899999999999999875 45543
No 218
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=20.95 E-value=97 Score=27.68 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHHHcCCCCEEEecCC
Q 015785 368 QPLGLQRVLEHFKQLYGNPPMYIHENG 394 (400)
Q Consensus 368 ~P~GL~~~L~~i~~rY~~~PI~ITENG 394 (400)
||--|.+.|.+++..+.++|.+|.-.|
T Consensus 101 ypA~LKNAlD~lyheW~gKPalivSyG 127 (199)
T KOG4530|consen 101 YPAPLKNALDWLYHEWAGKPALIVSYG 127 (199)
T ss_pred CchHHHHHHHHhhhhhcCCceEEEEec
Confidence 789999999999999988997776554
No 219
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=20.88 E-value=9.1e+02 Score=24.68 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=82.6
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccC---CCCC--CChhhhH-HHHHHHHHHHHcCCceeEeec----------cCCC
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPN---GRGP--VNPKGLQ-YYNNLINELISYGIQPHVTLH----------HFDL 145 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~---g~g~--~n~~~~~-~y~~~i~~l~~~Gi~p~~tL~----------h~~~ 145 (400)
..+-++.++++|++.+-+.=-|..---+ +-|. +|++-+- -...+++.+++.|+++=+=+- .-..
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~h 139 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREH 139 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhC
Confidence 4556788899999988887789653111 0121 2332221 267999999999999765331 1236
Q ss_pred cHhHHhhhC-----C-------CCCchhHHHHHHHHHHHHHHhcCCCceE-EEecCCccccccCcccCCCCCCCCCCccc
Q 015785 146 PQALEDEYG-----G-------WINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEPNAFANLGYDYGIAPPQRCSSINH 212 (400)
Q Consensus 146 P~~l~~~~g-----g-------~~~~~~~~~f~~ya~~~~~~~~d~v~~w-~t~NEp~~~~~~gy~~g~~~p~~~~~~~~ 212 (400)
|.|+...-+ | ..++++.+...+-...+++.+| |+|. .=+|.... .++...
T Consensus 140 Pdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~~~~-----------~~~~~~---- 202 (394)
T PF02065_consen 140 PDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNRDIT-----------EAGSPS---- 202 (394)
T ss_dssp BGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS-TT-----------S-SSTT----
T ss_pred ccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEeccccCCC-----------CCCCCC----
Confidence 888753211 1 3467777887777777777775 4544 33444211 111110
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Q 015785 213 CSRGNSSTEPYITVHHVLLAHASVARLYRKKYQRGYIGV 251 (400)
Q Consensus 213 ~~~~~~~~~~~~~~~~~llAha~a~~~~r~~~~~~~IG~ 251 (400)
.. ...|...++--+..+.+|+.+|+..|-.
T Consensus 203 -------~~--~~~~~~~~~~y~l~~~L~~~~P~v~iE~ 232 (394)
T PF02065_consen 203 -------LP--EGYHRYVLGLYRLLDRLRARFPDVLIEN 232 (394)
T ss_dssp -------S---GHHHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred -------ch--HHHHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 01 4667666666678888899999776643
No 220
>PRK01060 endonuclease IV; Provisional
Probab=20.86 E-value=4.7e+02 Score=24.61 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=36.1
Q ss_pred cHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCcee
Q 015785 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (400)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~ 137 (400)
+++-++.++++|++++=+.+.-++.... +.++.+- .+++-+.+.++|+++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 7888999999999999988765554322 3455443 4455566779999853
No 221
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=20.86 E-value=1.9e+02 Score=33.72 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHcCCceeEeec
Q 015785 119 LQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
++=+++||++|+++||++|+++-
T Consensus 554 i~EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecc
Confidence 56689999999999999999853
No 222
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=20.79 E-value=2.8e+02 Score=28.15 Aligned_cols=94 Identities=17% Similarity=0.333 Sum_probs=54.6
Q ss_pred HcCCCceeecccCCccccCCCCCCChhhhHHHHHHH--HHHHHcCCceeEeeccCCCcHhHHhhh---CC---CCCchhH
Q 015785 91 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLI--NELISYGIQPHVTLHHFDLPQALEDEY---GG---WINRTIV 162 (400)
Q Consensus 91 ~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i--~~l~~~Gi~p~~tL~h~~~P~~l~~~~---gg---~~~~~~~ 162 (400)
++|++..|+.|.=.+.--. |..|. +|+++= ...+..|+++|.+- |..|.|.-... || -+.++--
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccC--CCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhHh
Confidence 5888999988865554322 44442 233322 33667888888775 88999875431 33 3444433
Q ss_pred HHHHHHHHHHHHHhcC---CCceEEEecCCccc
Q 015785 163 KDFTAYADVCFRQFGD---RVSYWTTVNEPNAF 192 (400)
Q Consensus 163 ~~f~~ya~~~~~~~~d---~v~~w~t~NEp~~~ 192 (400)
.+|++|-...+..+++ -+..--+=|||...
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4444444444555544 34455689999853
No 223
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=20.73 E-value=2.5e+02 Score=26.42 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCC---CCchhHHHHHHHHHHHHHHhcCCCc
Q 015785 121 YYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW---INRTIVKDFTAYADVCFRQFGDRVS 181 (400)
Q Consensus 121 ~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~---~~~~~~~~f~~ya~~~~~~~~d~v~ 181 (400)
..+++++++.++|++-+.-.-|..+|..+.. ..| .+.+..+.|.+-++.+-++|+++++
T Consensus 16 ~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~ 77 (253)
T TIGR01856 16 TLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLK 77 (253)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCe
Confidence 3679999999999999998899775432211 112 1223345555556666788887654
No 224
>PLN02229 alpha-galactosidase
Probab=20.73 E-value=2.2e+02 Score=29.58 Aligned_cols=122 Identities=23% Similarity=0.324 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhhhcc-cccccCCC----CCCCeehheh-hhhhhcCC-cCCCCCCCccceeecccCCcCCCCCc
Q 015785 2 MLRLSFLLMYLLNLATSALTA-VEYSKNDF----PPGFLFGAST-SAYQVEGA-ANEDGRTPSIWDTFAHAGNVHGTGDI 74 (400)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f----p~~FlwG~At-sa~QvEG~-~~~dgkg~s~Wd~~~~~~~~~~~~~~ 74 (400)
.|++.|++..++.+....... ......+- +..++-.++. .+.+.+-+ ....--|-+.|+.|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngla~tPpmGWnSWn~~------------ 73 (427)
T PLN02229 6 VLFLVVLLLSLSVLVSQSIAGRVKAPLLQSVFSKSFNSIYDTSMYGRLQLNNGLARTPQMGWNSWNFF------------ 73 (427)
T ss_pred chHHHHHHHHHHhhcchhhhhhhccccccccchhhhhhhhhhhhhhhhhccCCccCCCCceEEchhhh------------
Q ss_pred CCCc-ccCcHHHHHHH-----HHcCCCceeecccCCccccCCCCCC--ChhhhHH-HHHHHHHHHHcCCc
Q 015785 75 ACDG-YHKYKEDVKLM-----ADTGLDAYRFSISWSRLIPNGRGPV--NPKGLQY-YNNLINELISYGIQ 135 (400)
Q Consensus 75 a~d~-y~~~~eDi~l~-----~~lG~~~~R~si~W~ri~p~g~g~~--n~~~~~~-y~~~i~~l~~~Gi~ 135 (400)
.|+. -+..++-.+.| +++|.+.+=+.-.|..-.-+..|.+ |++-+-. .+.+.|.+++.|++
T Consensus 74 ~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlK 143 (427)
T PLN02229 74 ACNINETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLK 143 (427)
T ss_pred CcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCc
No 225
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.71 E-value=1.1e+02 Score=29.86 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=29.0
Q ss_pred hhhhHHHHHHHHHHHHcCCceeEeeccCCCcH
Q 015785 116 PKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (400)
Q Consensus 116 ~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~ 147 (400)
.+|++-+.++|+.+++.|+.+|+++=+.|+|.
T Consensus 69 ~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~n 100 (278)
T PRK00125 69 AEGLAQLERTIAYLREAGVLVIADAKRGDIGS 100 (278)
T ss_pred chhhhHHHHHHHHHHHCCCcEEEEeecCChHH
Confidence 46788899999999999999999999999984
No 226
>PLN03153 hypothetical protein; Provisional
Probab=20.68 E-value=1.1e+02 Score=32.57 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=38.4
Q ss_pred HHHHcC-CceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHH----HHHHHHh--cCCCceEEEecCCccccccCcccC
Q 015785 128 ELISYG-IQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA----DVCFRQF--GDRVSYWTTVNEPNAFANLGYDYG 200 (400)
Q Consensus 128 ~l~~~G-i~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya----~~~~~~~--~d~v~~w~t~NEp~~~~~~gy~~g 200 (400)
.+.+.| ++|+++||||+.=. --|-+-...+.++.+..-| ..++++. +|+..-|..- +..||...
T Consensus 326 G~les~p~~P~vSlHH~~~~~---p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~ 396 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEAVD---PFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQ 396 (537)
T ss_pred hHhhcCCCCCceeeeeccccc---cccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEE
Confidence 345666 99999999999510 0122223345566665544 2223444 5665556433 45688766
Q ss_pred CCCCC
Q 015785 201 IAPPQ 205 (400)
Q Consensus 201 ~~~p~ 205 (400)
.++-+
T Consensus 397 ~y~~~ 401 (537)
T PLN03153 397 VFPSI 401 (537)
T ss_pred EecCC
Confidence 66543
No 227
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=20.58 E-value=4.2e+02 Score=23.31 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHcCCC----ceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC
Q 015785 81 KYKEDVKLMADTGLD----AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (400)
Q Consensus 81 ~~~eDi~l~~~lG~~----~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~ 144 (400)
.+++.++.++..|+. .+.+++.=+-.+..+.-.++.++....+++.+.|++++...+.-.-|-|
T Consensus 26 ~~~~~~~~~~~~g~~~~~~~~~i~l~~~v~F~~~sa~L~~~~~~~L~~ia~~l~~~~~~~v~I~GhTD 93 (160)
T PRK09967 26 FTPEQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTD 93 (160)
T ss_pred CCHHHHHHHHhcCceecCCceEEEcCCceeeCCCccccCHHHHHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 367888889999986 3445554334455546678999999999999999998765555555655
No 228
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=20.55 E-value=1.2e+02 Score=22.23 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=24.3
Q ss_pred HHHHHHHHH-cCCceeEeeccCCCcHhHHhhhCCCCCchhHHHHHHHH
Q 015785 123 NNLINELIS-YGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (400)
Q Consensus 123 ~~~i~~l~~-~Gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 169 (400)
+++++.|.+ +||+|.+|.. .|-. +.+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHH------HHHHHHHHHHHHh
Confidence 567777665 8999998864 4532 2246677787773
No 229
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=20.54 E-value=3.3e+02 Score=24.40 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=37.5
Q ss_pred HHHHcCCCceeeccc---CCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCC
Q 015785 88 LMADTGLDAYRFSIS---WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (400)
Q Consensus 88 l~~~lG~~~~R~si~---W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~ 144 (400)
..+++|++.+.+.+. ++.+.-..+.......-..|..+.+.+.+.|+..++|=+|.|
T Consensus 47 ~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 47 LAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 347899999988876 222221111122233345688888899999999999988765
No 230
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=20.49 E-value=3.9e+02 Score=27.94 Aligned_cols=91 Identities=15% Similarity=0.217 Sum_probs=59.6
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCC
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~ 158 (400)
-.|.++-.++++++|+|..-+.=- .+-....--++..-+....++-|-.+.+||++.+++. |..|..| ||...
T Consensus 182 ~qR~kDYAR~laSiGINg~v~NNV--Nvk~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~T 254 (684)
T COG3661 182 DQRMKDYARALASIGINGTVLNNV--NVKKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLKT 254 (684)
T ss_pred hHHHHHHHHHHhhcCcceEEeccc--ccchhhhheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcCc
Confidence 367788889999999998876521 0111101113444577778889999999999999985 7888765 77654
Q ss_pred ch-hHHHHHHHHHHHHHHh
Q 015785 159 RT-IVKDFTAYADVCFRQF 176 (400)
Q Consensus 159 ~~-~~~~f~~ya~~~~~~~ 176 (400)
.+ .-++-+++++.-++..
T Consensus 255 ADPLDe~VrawWkeka~~I 273 (684)
T COG3661 255 ADPLDEAVRAWWKEKADEI 273 (684)
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 43 3345555666544433
No 231
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.30 E-value=9.1e+02 Score=24.47 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=52.5
Q ss_pred ccCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeE-eeccCCCcHhHHhhhCCCC
Q 015785 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV-TLHHFDLPQALEDEYGGWI 157 (400)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~-tL~h~~~P~~l~~~~gg~~ 157 (400)
.-...|-++.++++|++.+=+ ....+.|-+ ....+.=...+++-+.|.++||++.. +..-+..|.+ +.|++.
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~--~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~la 103 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTF--HDDDLIPFG--APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFT 103 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEe--cccccCCCC--CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCC
Confidence 345688899999999998854 333455552 11111113366777889999999664 3322222333 226777
Q ss_pred Cchh--HHHHHHHHH---HHHHHhcCC
Q 015785 158 NRTI--VKDFTAYAD---VCFRQFGDR 179 (400)
Q Consensus 158 ~~~~--~~~f~~ya~---~~~~~~~d~ 179 (400)
+++- .+.=.++.+ .+++.+|-.
T Consensus 104 s~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 104 SNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7532 222222333 235667654
No 232
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=20.27 E-value=6.9e+02 Score=24.19 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=54.8
Q ss_pred cCcHHHHHHHHHcCCCceeecccCCccccCCCCCCChhhhHHHHHHHHHHHHcCCceeEeeccCCCcHhHHhhhCCCCCc
Q 015785 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (400)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~~tL~h~~~P~~l~~~~gg~~~~ 159 (400)
.+.++-++..|+.|+ .++.+|+-+--.|. .|..+ .+++.++++.+.+.|..- ++|. |- .|..+|
T Consensus 120 ~~~~~~v~~ak~~g~-~v~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~~P 183 (287)
T PRK05692 120 ERFEPVAEAAKQAGV-RVRGYVSCVLGCPY-EGEVP---PEAVADVAERLFALGCYE-ISLG---------DT-IGVGTP 183 (287)
T ss_pred HHHHHHHHHHHHcCC-EEEEEEEEEecCCC-CCCCC---HHHHHHHHHHHHHcCCcE-EEec---------cc-cCccCH
Confidence 345566888899997 47766665444466 56777 778999999999999874 4442 22 455554
Q ss_pred hhHHHHHHHHHHHHHHhcC
Q 015785 160 TIVKDFTAYADVCFRQFGD 178 (400)
Q Consensus 160 ~~~~~f~~ya~~~~~~~~d 178 (400)
....++++.+.+++++
T Consensus 184 ---~~v~~lv~~l~~~~~~ 199 (287)
T PRK05692 184 ---GQVRAVLEAVLAEFPA 199 (287)
T ss_pred ---HHHHHHHHHHHHhCCC
Confidence 4566667777777764
No 233
>PF15240 Pro-rich: Proline-rich
Probab=20.18 E-value=86 Score=28.41 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHh
Q 015785 5 LSFLLMYLLNLAT 17 (400)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (400)
+|||..+||||.+
T Consensus 3 lVLLSvALLALSS 15 (179)
T PF15240_consen 3 LVLLSVALLALSS 15 (179)
T ss_pred hHHHHHHHHHhhh
Confidence 4556667776654
No 234
>PTZ00445 p36-lilke protein; Provisional
Probab=20.08 E-value=1.8e+02 Score=27.21 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=38.8
Q ss_pred HHHHHHcCCCceeecccCCccccCCCCCCChh---------hhHHHHHHHHHHHHcCCceeEeec
Q 015785 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNNLINELISYGIQPHVTLH 141 (400)
Q Consensus 86 i~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~---------~~~~y~~~i~~l~~~Gi~p~~tL~ 141 (400)
++++++.|++++=+.++=.-|.--..|-.++. +=.-...++.+|.++||.++|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 57899999999988776554532211222222 334477899999999999988775
Done!